Citrus Sinensis ID: 044877

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISSRQC
Secondary Structure (PSIPRED)
cccccccEEEcccccccEEEccccccccccccEEEEEEcccccEEEEcccccEEEEccccHHccccccccccccEEEEEEcccccEEEEEcccEEEEEEEEEEcccccccccccccccccccccEEEEEccHHHHcccccccccccccccccccccEEEEEEEEEccEEEEEEcHHHHcccccEEEccccccEEEEEEEEEccccEEEEEEEcccEEEEccccccEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccccEEEHcHccEEcccccEEEEEEccccEEEEEcccccEEEEccccHHccccccccccccEEEEEEcccccEEEEEccEEEEEEEEEEcccccccccccccccccccccccEEEEccHHHHHccccccccccEEEEEccccccEEEEEEEcccEEEEEEHHHHHccccccHHHcccccccEEEEEEEccccHEHHHHcccccEccccccccEEEEccccEEEEEcccccc
Coil and Loop (DISEMBL)
MRDKNGIVQNLanagapvlnwsqghqfsrgtnfqcfastgdgsivvgSLDGkirlyssnsmrqaktafpglgspiryvdvtydgrwilgTTDTYLILICTLftdkngttktgfngrmgnkiaaprllkltpldshlagvnnkfhKAQFSWVTENGKQERHLVATVGKFSVIWNFqqvkngshecyqnqeglkscycykivlkddsivdsrfmhdkfavsdlpeaplviatpmkvssfsissrqc
Flexible Loop (DISEMBL)
MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKtafpglgspiryVDVTYDGRWILGTTDTYLILICTLFTDKNGttktgfngrmgnKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFavsdlpeaplviatpmkvssfsissrqc
Low Complexity Region (SEG)
MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISSRQC
Disordered region (IsUnstruct)
*******VQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIAT**************
Disordered Region (DISOPRED)
*****GI**NLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKN*********************KLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVI****************
Disordered Region (DISEMBL)
MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKV**********
Disordered Region (DISPRO)
****NGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISSRQC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
P40781	501	Protein CYPRO4 OS=Cynara	N/A	no	0.983	0.479	0.788	1e-115
Q555V7	938	VID27-like protein OS=Dic	yes	no	0.598	0.155	0.319	3e-18
Q1MTR3	801	Vacuolar import and degra	yes	no	0.655	0.199	0.325	8e-15
P40157	782	Vacuolar import and degra	yes	no	0.586	0.182	0.303	4e-12

>sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1

 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 190/241 (78%), Positives = 222/241 (92%), Gaps = 1/241 (0%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD+ G+VQN+A++ +PVL+W+QGHQFSRGTNFQ FA+TGDGSIVVGSLDGKIRLYS+ S
Sbjct: 252 MRDRRGMVQNIAHSDSPVLHWTQGHQFSRGTNFQSFATTGDGSIVVGSLDGKIRLYSTTS 311

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MR AKTAFPGLGSPI +VDVTYDG+WILGTTDTYLILIC+LFTDK+G TKTGF+GRMGNK
Sbjct: 312 MRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICSLFTDKDGKTKTGFSGRMGNK 371

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           I APRLLKLTP+DSH AGVNNKFH  +FSWVTE+GKQERHLVATVGKFSVIW+FQ+VKN 
Sbjct: 372 IPAPRLLKLTPVDSHTAGVNNKFHGGRFSWVTESGKQERHLVATVGKFSVIWDFQRVKNS 431

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKF-AVSDLPEAPLVIATPMKVSSFSI 239
            HECY+NQEGLKSCYCYK++ KD+SI++S FM+DK+ AV D PEAPLV+ATP K++SFS+
Sbjct: 432 GHECYRNQEGLKSCYCYKLMTKDESIIESLFMNDKYAAVGDSPEAPLVMATPKKITSFSM 491

Query: 240 S 240
           S
Sbjct: 492 S 492

Cynara cardunculus (taxid: 4265)

>sp|Q555V7|VID27_DICDI VID27-like protein OS=Dictyostelium discoideum GN=DDB_G0274813 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 23/169 (13%)

Query: 35  CFASTGDGSIVVGSLDGKIRLYSSNSMRQ----------------AKTAFPGLGSPIRYV 78
           C A+TG G I  G+  G+I+L+S     Q                ++T  PG+G PI  +
Sbjct: 741 CAATTGSGQIAFGTSKGEIKLFSKTQFDQNKRSVTSSDPLGAIARSRTTLPGIGDPIVGI 800

Query: 79  DVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLD-SHLA 137
           DVT DG+WI+ T   Y+++I     D +    +GF  R+G +  +P+ L L P D   + 
Sbjct: 801 DVTKDGKWIVATCKQYIMVIPASLKDGS----SGFEDRLGARRPSPKRLILKPQDIKRMG 856

Query: 138 GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQ 186
           GV N F  A+F+ V +  + E  ++ + G F + WNF+++K    + YQ
Sbjct: 857 GVVN-FTPAKFNIVGDE-QSETSILTSTGSFLITWNFRKIKQNILDVYQ 903

Dictyostelium discoideum (taxid: 44689)

>sp|Q1MTR3|VID27_SCHPO Vacuolar import and degradation protein 27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vid27 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 22  SQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT 81
            Q  Q++   +F   A+T +G I V S  G IRL+    +  AKTA P LG  I  VDVT
Sbjct: 572 EQFKQYATKNDFSSAATTENGYIAVASNKGDIRLFDRIGV-NAKTALPALGEAIIGVDVT 630

Query: 82  YDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVN 140
             G ++L T  TY++LI T   +     + GF      +K   P+ L+L+P   H+A + 
Sbjct: 631 ASGDFVLATCKTYILLIDTRIKEGRYAGRLGFERNFAKDKKPKPKRLQLSP--QHIAMMQ 688

Query: 141 NK------FHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQ 186
            +      F  A+F+  T    +E  +V+++G F + WN  +VK G  + Y+
Sbjct: 689 RELKGGASFTPAKFN--TGIDAKETTIVSSIGPFLISWNLDRVKRGFTDSYK 738

Has a role in the negative regulation of gluconeogenesis. Required for vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40157|VID27_YEAST Vacuolar import and degradation protein 27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VID27 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 12/155 (7%)

Query: 32  NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT 91
           NF    +T  G I +GS  G I+LY    +R AKTA P LG  I+++  + DG+W+L T 
Sbjct: 567 NFSSIGTTESGYIAIGSEKGDIKLYDRLGIR-AKTAIPSLGQAIKFITTSADGKWLLATC 625

Query: 92  DTYLILICTLFTDKNGTTKTGF-NGRMGNKIAAPRLLKLTPLDSHLAGVNN------KFH 144
           ++ L+L+     D       GF      ++     +LK+ P   H A +        +F 
Sbjct: 626 ESTLLLMDLKIKDGKNAGNIGFLKSFPASENVKTYVLKIRP--EHSASILTYTKKPIRFT 683

Query: 145 KAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179
           KA F+  T  G+QE+ +V + G +++ W+ + + N
Sbjct: 684 KAYFN--TGIGQQEQTIVTSTGPYAISWSLKGILN 716

Has a role in the negative regulation of gluconeogenesis. Required for vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
224137482	645	predicted protein [Populus trichocarpa]	0.995	0.376	0.917	1e-132
224063527	648	predicted protein [Populus trichocarpa]	0.995	0.375	0.905	1e-130
255538310	639	Protein CYPRO4, putative [Ricinus commun	0.995	0.380	0.901	1e-129
356510402	631	PREDICTED: protein CYPRO4-like [Glycine	0.995	0.385	0.864	1e-127
356519226	637	PREDICTED: protein CYPRO4-like [Glycine	0.995	0.381	0.860	1e-127
350537733	644	dem protein [Solanum lycopersicum] gi|21	0.991	0.375	0.872	1e-125
302142319	506	unnamed protein product [Vitis vinifera]	0.995	0.480	0.868	1e-125
225458607	632	PREDICTED: protein CYPRO4 [Vitis vinifer	0.995	0.384	0.868	1e-124
147844643	632	hypothetical protein VITISV_043502 [Viti	0.995	0.384	0.868	1e-124
359475193	634	PREDICTED: protein CYPRO4-like [Vitis vi	0.995	0.383	0.843	1e-122

>gi|224137482|ref|XP_002327137.1| predicted protein [Populus trichocarpa] gi|222835452|gb|EEE73887.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/243 (91%), Positives = 236/243 (97%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD++GIVQNLA+A  PVLNW+QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYS+NS
Sbjct: 403 MRDRHGIVQNLASANTPVLNWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSTNS 462

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSPI +VDVT+DG+WILGTTDTYLILIC+LFTDK+G TKTGFNGRMGN+
Sbjct: 463 MRQAKTAFPGLGSPITHVDVTFDGKWILGTTDTYLILICSLFTDKDGKTKTGFNGRMGNR 522

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           IAAPRLLKLTPLDSHLAGVN KF KAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG
Sbjct: 523 IAAPRLLKLTPLDSHLAGVNKKFQKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 582

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECY+NQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSD PEAPLVIATPMKVSSFSIS
Sbjct: 583 SHECYRNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDSPEAPLVIATPMKVSSFSIS 642

Query: 241 SRQ 243
           SR+
Sbjct: 643 SRR 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063527|ref|XP_002301188.1| predicted protein [Populus trichocarpa] gi|222842914|gb|EEE80461.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/243 (90%), Positives = 231/243 (95%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD++GIVQNLA A  PVLNW+QGHQFSRGTNFQCFASTGDGSIVVGS DGKIRLYS NS
Sbjct: 406 MRDRHGIVQNLATANTPVLNWTQGHQFSRGTNFQCFASTGDGSIVVGSRDGKIRLYSGNS 465

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSPI +VDVT+DG+WILGTTDTYLILICTLFTDK+G  KTGFNGRMGN+
Sbjct: 466 MRQAKTAFPGLGSPITHVDVTFDGKWILGTTDTYLILICTLFTDKDGKMKTGFNGRMGNR 525

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           IAAPRLLKLTPLDSHLAGVNNKF KAQFSWVTENGKQERHLVAT GKFS IWNFQQVKNG
Sbjct: 526 IAAPRLLKLTPLDSHLAGVNNKFQKAQFSWVTENGKQERHLVATAGKFSAIWNFQQVKNG 585

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECY+NQEGLKSCYCYK+VLKDDSIVDSRFMHDKFAVSD PEAPLVIATPMKVSSFSIS
Sbjct: 586 SHECYRNQEGLKSCYCYKVVLKDDSIVDSRFMHDKFAVSDSPEAPLVIATPMKVSSFSIS 645

Query: 241 SRQ 243
           SR+
Sbjct: 646 SRR 648

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538310|ref|XP_002510220.1| Protein CYPRO4, putative [Ricinus communis] gi|223550921|gb|EEF52407.1| Protein CYPRO4, putative [Ricinus communis]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/243 (90%), Positives = 233/243 (95%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD+NGIVQ+L+ A APVLNW+QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS
Sbjct: 397 MRDRNGIVQDLSTASAPVLNWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 456

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSPI +VDVT+DG+WILGTTDTYLILICTLFTDK+G TKTGF+GRMGNK
Sbjct: 457 MRQAKTAFPGLGSPITHVDVTFDGKWILGTTDTYLILICTLFTDKDGKTKTGFSGRMGNK 516

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           IAAPRLLKL PLDS+ AGVNNKF  AQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG
Sbjct: 517 IAAPRLLKLNPLDSYAAGVNNKFRNAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 576

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECY+NQEGLKSCYCYKIV KDDSIVDSRFMHDKFAV+D PEAPLVIATPMKVSSFSIS
Sbjct: 577 SHECYRNQEGLKSCYCYKIVPKDDSIVDSRFMHDKFAVTDSPEAPLVIATPMKVSSFSIS 636

Query: 241 SRQ 243
           S++
Sbjct: 637 SKR 639

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510402|ref|XP_003523927.1| PREDICTED: protein CYPRO4-like [Glycine max]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 210/243 (86%), Positives = 234/243 (96%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD+NG+VQNLA++ APVLNW+QGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYS N+
Sbjct: 389 MRDRNGMVQNLADSNAPVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSVNT 448

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSP+ +VDVT+DG+WI+GTTD+YLILICTLFTDKNGTTKTGF GRMGN+
Sbjct: 449 MRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDSYLILICTLFTDKNGTTKTGFAGRMGNR 508

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           IAAPRLLKL PLDSHLAG NNKF  AQFSWVTENGKQERH+VATVGKFSVIWNFQQVK+G
Sbjct: 509 IAAPRLLKLNPLDSHLAGANNKFRNAQFSWVTENGKQERHIVATVGKFSVIWNFQQVKDG 568

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECY+NQ+GLKSC+CYKIVL+DDSIV+SRFMHDKFAV+D PEAPLVIATPMKVSSFSIS
Sbjct: 569 SHECYRNQQGLKSCFCYKIVLRDDSIVESRFMHDKFAVTDSPEAPLVIATPMKVSSFSIS 628

Query: 241 SRQ 243
           S++
Sbjct: 629 SKR 631

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519226|ref|XP_003528274.1| PREDICTED: protein CYPRO4-like [Glycine max]

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 209/243 (86%), Positives = 234/243 (96%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD+NG+VQNL ++ APVLNW+QGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYS N+
Sbjct: 395 MRDRNGMVQNLDDSNAPVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSVNT 454

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSP+ +VDVT+DG+WI+GTTD+YLILICTLFTDKNGTTKTGF+GRMGN+
Sbjct: 455 MRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDSYLILICTLFTDKNGTTKTGFSGRMGNR 514

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           IAAPRLLKL PLDSHLAG NNKF  AQFSWVTENGKQERH+VATVGKFSVIWNFQQVK+G
Sbjct: 515 IAAPRLLKLNPLDSHLAGANNKFRNAQFSWVTENGKQERHIVATVGKFSVIWNFQQVKDG 574

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECY+NQ+GLKSC+CYKIVL+DDSIV+SRFMHDKFAV+D PEAPLVIATPMKVSSFSIS
Sbjct: 575 SHECYRNQQGLKSCFCYKIVLRDDSIVESRFMHDKFAVTDSPEAPLVIATPMKVSSFSIS 634

Query: 241 SRQ 243
           S++
Sbjct: 635 SKR 637

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537733|ref|NP_001234563.1| dem protein [Solanum lycopersicum] gi|2190419|emb|CAA73973.1| dem [Solanum lycopersicum]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/243 (87%), Positives = 229/243 (94%), Gaps = 1/243 (0%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD++G+VQNL +   PVLNW+QGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYSS+S
Sbjct: 400 MRDRHGMVQNLVDESTPVLNWTQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSSSS 459

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSPI +VDVTYDG+WILGTTDTYLILICTLF DKNGTTKTGF GRMGNK
Sbjct: 460 MRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFIDKNGTTKTGFAGRMGNK 519

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           I+APRLLKL PLDSH+AG  NKF  AQFSWVTENGKQERHLVATVGKFSVIWNFQQVK+G
Sbjct: 520 ISAPRLLKLNPLDSHMAGA-NKFRSAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKDG 578

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECYQNQ GLKSCYCYKIVL+DDSIV+SRFMHDK+AVSD PEAPLV+ATPMKVSSFSIS
Sbjct: 579 SHECYQNQVGLKSCYCYKIVLRDDSIVESRFMHDKYAVSDSPEAPLVVATPMKVSSFSIS 638

Query: 241 SRQ 243
           SR+
Sbjct: 639 SRR 641

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142319|emb|CBI19522.3| unnamed protein product [Vitis vinifera]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/243 (86%), Positives = 229/243 (94%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD+NG+VQNL++A  PVL+W+QGHQFSRGTNFQCFA+ GDGSIVVGS+DGKIRLYS+N+
Sbjct: 264 MRDRNGMVQNLSDASTPVLHWTQGHQFSRGTNFQCFATAGDGSIVVGSIDGKIRLYSNNT 323

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSPI +VDVT+DG+WILGTTDTYLILI TLF DK G TKTGF GRMGN+
Sbjct: 324 MRQAKTAFPGLGSPITHVDVTFDGKWILGTTDTYLILISTLFIDKEGRTKTGFAGRMGNR 383

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           I+APRLLKLTPLDSHLAGVNNKF  AQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG
Sbjct: 384 ISAPRLLKLTPLDSHLAGVNNKFRGAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 443

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECY NQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSD PEAPLV+AT MKVSSFSIS
Sbjct: 444 SHECYHNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDSPEAPLVVATHMKVSSFSIS 503

Query: 241 SRQ 243
           S++
Sbjct: 504 SKR 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458607|ref|XP_002284732.1| PREDICTED: protein CYPRO4 [Vitis vinifera]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/243 (86%), Positives = 229/243 (94%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD+NG+VQNL++A  PVL+W+QGHQFSRGTNFQCFA+ GDGSIVVGS+DGKIRLYS+N+
Sbjct: 390 MRDRNGMVQNLSDASTPVLHWTQGHQFSRGTNFQCFATAGDGSIVVGSIDGKIRLYSNNT 449

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSPI +VDVT+DG+WILGTTDTYLILI TLF DK G TKTGF GRMGN+
Sbjct: 450 MRQAKTAFPGLGSPITHVDVTFDGKWILGTTDTYLILISTLFIDKEGRTKTGFAGRMGNR 509

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           I+APRLLKLTPLDSHLAGVNNKF  AQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG
Sbjct: 510 ISAPRLLKLTPLDSHLAGVNNKFRGAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 569

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECY NQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSD PEAPLV+AT MKVSSFSIS
Sbjct: 570 SHECYHNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDSPEAPLVVATHMKVSSFSIS 629

Query: 241 SRQ 243
           S++
Sbjct: 630 SKR 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844643|emb|CAN82150.1| hypothetical protein VITISV_043502 [Vitis vinifera]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/243 (86%), Positives = 229/243 (94%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MRD+NG+VQNL++A  PVL+W+QGHQFSRGTNFQCFA+ GDGSIVVGS+DGKIRLYS+N+
Sbjct: 390 MRDRNGMVQNLSDASTPVLHWTQGHQFSRGTNFQCFATAGDGSIVVGSIDGKIRLYSNNT 449

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSPI +VDVT+DG+WILGTTDTYLILI TLF DK G TKTGF GRMGN+
Sbjct: 450 MRQAKTAFPGLGSPITHVDVTFDGKWILGTTDTYLILISTLFIDKEGRTKTGFAGRMGNR 509

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           I+APRLLKLTPLDSHLAGVNNKF  AQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG
Sbjct: 510 ISAPRLLKLTPLDSHLAGVNNKFRGAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 569

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECY NQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSD PEAPLV+AT MKVSSFSIS
Sbjct: 570 SHECYHNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDSPEAPLVVATHMKVSSFSIS 629

Query: 241 SRQ 243
           S++
Sbjct: 630 SKR 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475193|ref|XP_002282160.2| PREDICTED: protein CYPRO4-like [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/243 (84%), Positives = 228/243 (93%)

Query: 1   MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
           MR+K G+VQN+  A +PVL+W+QGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYS  S
Sbjct: 392 MREKRGMVQNITTASSPVLHWTQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSRTS 451

Query: 61  MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
           MRQAKTAFPGLGSPI +VDVTYDG+WILGT DT+LILICT FTDK+G TKTGF+GRMGNK
Sbjct: 452 MRQAKTAFPGLGSPITHVDVTYDGKWILGTADTFLILICTSFTDKDGKTKTGFSGRMGNK 511

Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
           I APRLLKLTP+DSH+AGV+NKFH  QFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 
Sbjct: 512 IPAPRLLKLTPVDSHMAGVDNKFHGGQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNS 571

Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
           SHECYQNQ+GLKSCYCYKIVLKD+SIV+SRFMHDKFAVSD PEAPLV+ATP+KVSSFSIS
Sbjct: 572 SHECYQNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVSDSPEAPLVVATPLKVSSFSIS 631

Query: 241 SRQ 243
           +++
Sbjct: 632 NKR 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2119221	645	AT4G33400 "AT4G33400" [Arabido	0.995	0.376	0.818	2.9e-110
TAIR|locus:2094113	648	AT3G19240 "AT3G19240" [Arabido	0.983	0.370	0.775	2e-104
DICTYBASE|DDB_G0274813	938	DDB_G0274813 "WD40-like domain	0.598	0.155	0.331	1.8e-16
CGD|CAL0001289	745	VID27 [Candida albicans (taxid	0.655	0.214	0.346	2e-15
UNIPROTKB|Q59L93	745	VID27 "Putative uncharacterize	0.655	0.214	0.346	2e-15
POMBASE|SPBC1685.14c	801	SPBC1685.14c "Vid27 family pro	0.651	0.198	0.327	1.6e-14
ASPGD|ASPL0000039484	796	AN3005 [Emericella nidulans (t	0.770	0.236	0.316	2.5e-14
SGD|S000005156	782	VID27 "Cytoplasmic protein of	0.790	0.246	0.286	2.3e-13

TAIR|locus:2119221 AT4G33400 "AT4G33400" [Arabidopsis thaliana (taxid:3702)]

 Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
 Identities = 199/243 (81%), Positives = 226/243 (93%)

Query:     1 MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
             MRD+ G+VQ+LA A  PVLNW+QGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYSSN+
Sbjct:   403 MRDRYGMVQDLATANTPVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSSNT 462

Query:    61 MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
             MRQAKTAFPGLG+P+ +VD T+DG+WI+GTTDTYLI+ICTLFTDK+G TKTGF GRMGNK
Sbjct:   463 MRQAKTAFPGLGAPVTHVDATFDGKWIVGTTDTYLIVICTLFTDKSGKTKTGFEGRMGNK 522

Query:   121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
             IAAPRLLKL PLD+HLAG +NKF  AQFSWVTE+GKQERH+VATVGKFSVIWNFQQVKNG
Sbjct:   523 IAAPRLLKLRPLDAHLAGSDNKFRNAQFSWVTEDGKQERHVVATVGKFSVIWNFQQVKNG 582

Query:   181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSIS 240
             SHECY +QEGLK CYCYKIVL+++SIVDSRFM+D FA+S  PEAPLVIATPMKVSSFS+S
Sbjct:   583 SHECYHDQEGLKKCYCYKIVLRNESIVDSRFMNDNFAISGSPEAPLVIATPMKVSSFSLS 642

Query:   241 SRQ 243
             S++
Sbjct:   643 SKR 645

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006260 "DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2094113 AT3G19240 "AT3G19240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 190/245 (77%), Positives = 219/245 (89%)

Query:     1 MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
             MRD+ GIVQN+    +P+L W+QGHQFSRGTNFQCFA+TGDGSIVVGSLDGKIRLYS  S
Sbjct:   406 MRDRRGIVQNI---DSPILEWTQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSKTS 462

Query:    61 MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
             MR AKTAFPGLGSPI +VDV+YDG+WILGTTDTYL+LICTLFTDKNG TKTGF+GRMGNK
Sbjct:   463 MRMAKTAFPGLGSPITHVDVSYDGKWILGTTDTYLVLICTLFTDKNGLTKTGFSGRMGNK 522

Query:   121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
             I APRLLKLTPLDSHLAG +NKFH   FSWVTE+GKQERH+VATVGKFSVIW+ ++VKN 
Sbjct:   523 IPAPRLLKLTPLDSHLAGKDNKFHGGHFSWVTESGKQERHIVATVGKFSVIWDLERVKNS 582

Query:   181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSD--LPEAPLVIATPMKVSSFS 238
             +HECY+NQ+GLKSCYCYKI+LKD+SIV+SRFMHD F+ S    PEAPLV+ATP+KVSS S
Sbjct:   583 AHECYRNQQGLKSCYCYKILLKDESIVESRFMHDNFSFSGNKSPEAPLVVATPLKVSSIS 642

Query:   239 ISSRQ 243
             +S ++
Sbjct:   643 LSGKR 647

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

DICTYBASE|DDB_G0274813 DDB_G0274813 "WD40-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 216 (81.1 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 56/169 (33%), Positives = 88/169 (52%)

Query:    35 CFASTGDGSIVVGSLDGKIRLYSSNSMRQAK----------------TAFPGLGSPIRYV 78
             C A+TG G I  G+  G+I+L+S     Q K                T  PG+G PI  +
Sbjct:   741 CAATTGSGQIAFGTSKGEIKLFSKTQFDQNKRSVTSSDPLGAIARSRTTLPGIGDPIVGI 800

Query:    79 DVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLD-SHLA 137
             DVT DG+WI+ T   Y+++I      K+G++  GF  R+G +  +P+ L L P D   + 
Sbjct:   801 DVTKDGKWIVATCKQYIMVIPASL--KDGSS--GFEDRLGARRPSPKRLILKPQDIKRMG 856

Query:   138 GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQ 186
             GV N F  A+F+ V +  + E  ++ + G F + WNF+++K    + YQ
Sbjct:   857 GVVN-FTPAKFNIVGDE-QSETSILTSTGSFLITWNFRKIKQNILDVYQ 903

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0001289 VID27 [Candida albicans (taxid:5476)]

 Score = 205 (77.2 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 60/173 (34%), Positives = 89/173 (51%)

Query:    14 AGAPVLNWSQGHQFSRGTN--FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGL 71
             +G  ++N  + ++  + TN  FQ  A+T  G I +GS  G IRL+       AKTA P L
Sbjct:   523 SGTKLVN-DKTYKAYKTTNNQFQTLATTDKGYIALGSGKGDIRLFDRLGAN-AKTALPSL 580

Query:    72 GSPIRYVDVTYDGRWILGTTDTYLILICTLFTD-KNGTTKTGFNGRMG-NKIAAPRLLKL 129
             G PI  +DV+ DGRW+L T  TYL+LI    +D +    K GF      +K   PR L L
Sbjct:   581 GDPIIGIDVSKDGRWLLATCKTYLLLIDNKISDGQKNAGKLGFTNYFDKDKKPTPRRLAL 640

Query:   130 TPL-DSHLAGVNN----KFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV 177
              P  ++++   N      F  A F+  T    +E  +V ++GK+ V W+  +V
Sbjct:   641 KPEHEAYMVRENGGKQLSFTPAYFN--TGRDSKETTIVTSLGKYVVTWSMGKV 691

GO:0003674 "molecular_function" evidence=ND

GO:0035690 "cellular response to drug" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q59L93 VID27 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 205 (77.2 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 60/173 (34%), Positives = 89/173 (51%)

Query:    14 AGAPVLNWSQGHQFSRGTN--FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGL 71
             +G  ++N  + ++  + TN  FQ  A+T  G I +GS  G IRL+       AKTA P L
Sbjct:   523 SGTKLVN-DKTYKAYKTTNNQFQTLATTDKGYIALGSGKGDIRLFDRLGAN-AKTALPSL 580

Query:    72 GSPIRYVDVTYDGRWILGTTDTYLILICTLFTD-KNGTTKTGFNGRMG-NKIAAPRLLKL 129
             G PI  +DV+ DGRW+L T  TYL+LI    +D +    K GF      +K   PR L L
Sbjct:   581 GDPIIGIDVSKDGRWLLATCKTYLLLIDNKISDGQKNAGKLGFTNYFDKDKKPTPRRLAL 640

Query:   130 TPL-DSHLAGVNN----KFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV 177
              P  ++++   N      F  A F+  T    +E  +V ++GK+ V W+  +V
Sbjct:   641 KPEHEAYMVRENGGKQLSFTPAYFN--TGRDSKETTIVTSLGKYVVTWSMGKV 691

GO:0003674 "molecular_function" evidence=ND

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0035690 "cellular response to drug" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

POMBASE|SPBC1685.14c SPBC1685.14c "Vid27 family protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 197 (74.4 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 56/171 (32%), Positives = 87/171 (50%)

Query:    23 QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY 82
             Q  Q++   +F   A+T +G I V S  G IRL+    +  AKTA P LG  I  VDVT 
Sbjct:   573 QFKQYATKNDFSSAATTENGYIAVASNKGDIRLFDRIGVN-AKTALPALGEAIIGVDVTA 631

Query:    83 DGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNN 141
              G ++L T  TY++LI T   +     + GF      +K   P+ L+L+P   H+A +  
Sbjct:   632 SGDFVLATCKTYILLIDTRIKEGRYAGRLGFERNFAKDKKPKPKRLQLSP--QHIAMMQR 689

Query:   142 K------FHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQ 186
             +      F  A+F+  T    +E  +V+++G F + WN  +VK G  + Y+
Sbjct:   690 ELKGGASFTPAKFN--TGIDAKETTIVSSIGPFLISWNLDRVKRGFTDSYK 738

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000039484 AN3005 [Emericella nidulans (taxid:162425)]

 Score = 195 (73.7 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 67/212 (31%), Positives = 99/212 (46%)

Query:    26 QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR 85
             Q++   +F   A+T  G + V S  G IR++    +  AKT  P LG  I  +DV+ DGR
Sbjct:   562 QYASKNDFSALATTEKGYLAVASNKGDIRMFDRLGIN-AKTHIPALGEAIIGLDVSADGR 620

Query:    86 WILGTTDTYLILICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNK-- 142
             W+L T  TYL+LI  L  D     K GF      +    PR L LTP  +H+A   ++  
Sbjct:   621 WVLATCRTYLLLIDALQKDGKNEGKLGFERSFAKDSKPQPRRLGLTP--AHVAQFQHETK 678

Query:   143 ----FHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYK 198
                 F  A+F+  T    +E  +V   G F V W+ ++V  G  + Y     +K  Y   
Sbjct:   679 KPISFTPARFN--TGVDTEETSIVTATGPFIVTWSLKKVVAGRKDPYT----IKR-Y--- 728

Query:   199 IVLKDDSIVDS-RFMHDKFAVSDLPEAPLVIA 229
                 +D + D+ RF  DK  +  LP    ++A
Sbjct:   729 ---SEDVMADNFRFGSDKNVIVALPNEVNMVA 757

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

SGD|S000005156 VID27 "Cytoplasmic protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 186 (70.5 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 63/220 (28%), Positives = 104/220 (47%)

Query:    32 NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT 91
             NF    +T  G I +GS  G I+LY    +R AKTA P LG  I+++  + DG+W+L T 
Sbjct:   567 NFSSIGTTESGYIAIGSEKGDIKLYDRLGIR-AKTAIPSLGQAIKFITTSADGKWLLATC 625

Query:    92 DTYLILICTLFTDKNGTTKTGF-NGRMGNKIAAPRLLKLTPLDSHLAGVNN------KFH 144
             ++ L+L+     D       GF      ++     +LK+ P   H A +        +F 
Sbjct:   626 ESTLLLMDLKIKDGKNAGNIGFLKSFPASENVKTYVLKIRP--EHSASILTYTKKPIRFT 683

Query:   145 KAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKD- 203
             KA F+  T  G+QE+ +V + G +++ W+ + + N        Q+G  + Y Y+I   + 
Sbjct:   684 KAYFN--TGIGQQEQTIVTSTGPYAISWSLKGILN--------QDGSNN-YPYRIRRYNA 732

Query:   204 DSIVDS-RFMHDKFAVSDLPEAPLVIATPMKVSSFSISSR 242
             D + D+  F  DK  +  L +      +  KV SF   S+
Sbjct:   733 DVVADNFEFGSDKKVIVALKDD----VSLSKVKSFKQPSK 768


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      244       244   0.00098  113 3  11 22  0.42    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  205 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.88u 0.12s 20.00t   Elapsed:  00:00:01
  Total cpu time:  19.88u 0.12s 20.00t   Elapsed:  00:00:01
  Start:  Mon May 20 17:54:35 2013   End:  Mon May 20 17:54:36 2013

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	5e-29
COG5167	776	COG5167, VID27, Protein involved in vacuole import	3e-26

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score =  114 bits (287), Expect = 5e-29
 Identities = 60/176 (34%), Positives = 84/176 (47%), Gaps = 20/176 (11%)

Query: 22  SQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT 81
           S+  Q++   +F   A+T  G I V S  G IRL+    +  AKTA P LG PI  +DV+
Sbjct: 569 SESKQYASKNDFSALATTEKGYIAVASNKGDIRLFDRLGIN-AKTAIPALGDPIIGIDVS 627

Query: 82  YDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAA-----PRLLKLTPLDSHL 136
            DGRW+L T  TYL+LI TL  D     K GF         A     PR L+L P   H+
Sbjct: 628 ADGRWLLATCKTYLLLIDTLIKDGKNAGKLGFL----KSFPADAKPQPRRLQLKP--EHV 681

Query: 137 AGVNNK------FHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQ 186
           A +  +      F  A F+  T    +E  +V + G + + W+ ++V  G    Y 
Sbjct: 682 AYMLTETGKPISFTPAYFN--TGIDSKETTIVTSTGPYVITWSLKKVLQGDKNPYL 735

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

 Score =  106 bits (265), Expect = 3e-26
 Identities = 60/210 (28%), Positives = 86/210 (40%), Gaps = 26/210 (12%)

Query: 23  QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY 82
           +   +     F    +T  G I   S  G IRLY     R AKTA PGLG  I+++DVT 
Sbjct: 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTA 613

Query: 83  DGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRM-GNKIAAPRLLKLTPLDSHLAGVNN 141
           +G+ IL T   YL+L            + GF      ++   P+ L+L P   HLA +N 
Sbjct: 614 NGKHILATCKNYLLLTDVPIKYGQPAGRDGFLKSFPASEKPKPKRLQLKP--EHLAHINT 671

Query: 142 ------KFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCY 195
                  F  A+F+  T     E  +V + G + + WN   V NG              Y
Sbjct: 672 YTKEEIDFTPAKFN--TGIDASENTIVTSTGPYVISWNLDDVLNGKL------------Y 717

Query: 196 CYKIVLKDDSIV--DSRFMHDKFAVSDLPE 223
            Y+I      +V  +  F  D   +  LP+
Sbjct: 718 SYQIRRYSALVVADNFEFGEDSNVIVALPD 747

Length = 776

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG2395	644	consensus Protein involved in vacuole import and d	100.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	100.0
COG5167	776	VID27 Protein involved in vacuole import and degra	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.57
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.41
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.29
KOG0266	456	consensus WD40 repeat-containing protein [General	99.19
KOG0266	456	consensus WD40 repeat-containing protein [General	99.09
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.97
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	98.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.9
PTZ00421	493	coronin; Provisional	98.88
KOG0286	343	consensus G-protein beta subunit [General function	98.87
PTZ00420	568	coronin; Provisional	98.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	98.83
PTZ00420	568	coronin; Provisional	98.82
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.81
PTZ00421	493	coronin; Provisional	98.81
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	98.78
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	98.75
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	98.75
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.7
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.69
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.65
KOG0289	506	consensus mRNA splicing factor [General function p	98.65
PLN00181	793	protein SPA1-RELATED; Provisional	98.64
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.64
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.6
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.57
PLN00181	793	protein SPA1-RELATED; Provisional	98.57
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.56
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.55
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.54
KOG0263	707	consensus Transcription initiation factor TFIID, s	98.53
KOG1273	405	consensus WD40 repeat protein [General function pr	98.51
KOG0296	399	consensus Angio-associated migratory cell protein	98.49
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	98.49
KOG1539	910	consensus WD repeat protein [General function pred	98.48
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.43
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.43
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.43
KOG0772	641	consensus Uncharacterized conserved protein, conta	98.42
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.41
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.4
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.4
KOG0284	464	consensus Polyadenylation factor I complex, subuni	98.38
KOG0286	343	consensus G-protein beta subunit [General function	98.35
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.35
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.34
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.33
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.33
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.3
KOG0772	641	consensus Uncharacterized conserved protein, conta	98.3
KOG0295	406	consensus WD40 repeat-containing protein [Function	98.29
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	98.26
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.26
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	98.23
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	98.19
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	98.18
KOG0284	464	consensus Polyadenylation factor I complex, subuni	98.16
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	98.15
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	98.14
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.13
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.11
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.11
KOG1539	910	consensus WD repeat protein [General function pred	98.08
KOG0647	347	consensus mRNA export protein (contains WD40 repea	98.07
KOG1963	792	consensus WD40 repeat protein [General function pr	98.07
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	98.04
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.03
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.03
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.02
KOG2096	420	consensus WD40 repeat protein [General function pr	98.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	97.99
KOG0646	476	consensus WD40 repeat protein [General function pr	97.99
KOG4328	498	consensus WD40 protein [Function unknown]	97.99
KOG2096	420	consensus WD40 repeat protein [General function pr	97.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	97.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	97.96
KOG1274	933	consensus WD40 repeat protein [General function pr	97.96
KOG0645	312	consensus WD40 repeat protein [General function pr	97.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	97.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	97.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	97.92
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.9
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	97.86
KOG4328	498	consensus WD40 protein [Function unknown]	97.86
KOG0308	735	consensus Conserved WD40 repeat-containing protein	97.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.85
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.84
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.82
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	97.82
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.81
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	97.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	97.8
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	97.79
KOG0643	327	consensus Translation initiation factor 3, subunit	97.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.76
KOG1274	933	consensus WD40 repeat protein [General function pr	97.76
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.75
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	97.74
KOG1407	313	consensus WD40 repeat protein [Function unknown]	97.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	97.71
KOG1188	376	consensus WD40 repeat protein [General function pr	97.68
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	97.68
KOG0647	347	consensus mRNA export protein (contains WD40 repea	97.64
KOG0296	399	consensus Angio-associated migratory cell protein	97.63
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	97.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.62
KOG0295	406	consensus WD40 repeat-containing protein [Function	97.62
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.62
KOG0289	506	consensus mRNA splicing factor [General function p	97.6
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	97.6
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	97.58
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	97.57
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	97.57
KOG0270	463	consensus WD40 repeat-containing protein [Function	97.56
KOG0267	825	consensus Microtubule severing protein katanin p80	97.56
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	97.56
KOG0643	327	consensus Translation initiation factor 3, subunit	97.55
KOG0301	745	consensus Phospholipase A2-activating protein (con	97.54
COG2319	466	FOG: WD40 repeat [General function prediction only	97.54
KOG0641	350	consensus WD40 repeat protein [General function pr	97.54
KOG0645	312	consensus WD40 repeat protein [General function pr	97.53
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.52
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	97.52
KOG0771	398	consensus Prolactin regulatory element-binding pro	97.5
KOG4283	397	consensus Transcription-coupled repair protein CSA	97.49
KOG0973	942	consensus Histone transcription regulator HIRA, WD	97.48
KOG4283	397	consensus Transcription-coupled repair protein CSA	97.45
KOG0283	712	consensus WD40 repeat-containing protein [Function	97.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.44
KOG0302	440	consensus Ribosome Assembly protein [General funct	97.43
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	97.42
KOG0649	325	consensus WD40 repeat protein [General function pr	97.41
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.41
KOG0267	825	consensus Microtubule severing protein katanin p80	97.4
COG2319	466	FOG: WD40 repeat [General function prediction only	97.31
KOG0641	350	consensus WD40 repeat protein [General function pr	97.29
KOG0269	839	consensus WD40 repeat-containing protein [Function	97.29
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	97.28
KOG2395	644	consensus Protein involved in vacuole import and d	97.27
KOG0269	839	consensus WD40 repeat-containing protein [Function	97.25
KOG0301	745	consensus Phospholipase A2-activating protein (con	97.2
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	97.2
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.19
KOG2055	514	consensus WD40 repeat protein [General function pr	97.11
KOG0639	705	consensus Transducin-like enhancer of split protei	97.1
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	97.1
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	97.07
KOG2048	691	consensus WD40 repeat protein [General function pr	97.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.04
PRK11028	330	6-phosphogluconolactonase; Provisional	97.01
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.95
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	96.88
PRK02888	635	nitrous-oxide reductase; Validated	96.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	96.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	96.72
KOG1310	758	consensus WD40 repeat protein [General function pr	96.68
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	96.67
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	96.63
PRK01742	429	tolB translocation protein TolB; Provisional	96.62
PRK11028	330	6-phosphogluconolactonase; Provisional	96.56
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.48
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.44
KOG2106	626	consensus Uncharacterized conserved protein, conta	96.42
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	96.38
KOG0646	476	consensus WD40 repeat protein [General function pr	96.38
KOG0639	705	consensus Transducin-like enhancer of split protei	96.32
KOG2055	514	consensus WD40 repeat protein [General function pr	96.28
PRK01742	429	tolB translocation protein TolB; Provisional	96.25
KOG3881	412	consensus Uncharacterized conserved protein [Funct	96.25
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.23
KOG0649	325	consensus WD40 repeat protein [General function pr	96.2
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	96.2
KOG2139	445	consensus WD40 repeat protein [General function pr	96.19
KOG0300	481	consensus WD40 repeat-containing protein [Function	96.19
KOG1063	764	consensus RNA polymerase II elongator complex, sub	96.15
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	96.15
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.14
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.12
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	96.12
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.12
KOG1273	405	consensus WD40 repeat protein [General function pr	96.08
PRK05137	435	tolB translocation protein TolB; Provisional	96.06
KOG2695	425	consensus WD40 repeat protein [General function pr	96.05
KOG1334	559	consensus WD40 repeat protein [General function pr	96.04
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	96.01
KOG2048	691	consensus WD40 repeat protein [General function pr	95.98
KOG0290	364	consensus Conserved WD40 repeat-containing protein	95.93
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	95.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.87
PRK02889	427	tolB translocation protein TolB; Provisional	95.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	95.7
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	95.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	95.63
PRK02889	427	tolB translocation protein TolB; Provisional	95.58
KOG4547	541	consensus WD40 repeat-containing protein [General	95.52
KOG0270	463	consensus WD40 repeat-containing protein [Function	95.46
PRK00178	430	tolB translocation protein TolB; Provisional	95.39
PRK03629	429	tolB translocation protein TolB; Provisional	95.34
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.32
PRK04922	433	tolB translocation protein TolB; Provisional	95.29
KOG1188	376	consensus WD40 repeat protein [General function pr	95.25
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.25
KOG2321	703	consensus WD40 repeat protein [General function pr	95.13
PRK04922	433	tolB translocation protein TolB; Provisional	95.05
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	95.01
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	94.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	94.91
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	94.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	94.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	94.85
KOG2315	566	consensus Predicted translation initiation factor	94.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	94.55
KOG2321	703	consensus WD40 repeat protein [General function pr	94.46
KOG0303	472	consensus Actin-binding protein Coronin, contains	94.34
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	94.27
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	94.16
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	94.16
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	94.14
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.12
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	94.12
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	94.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	94.06
KOG0644	1113	consensus Uncharacterized conserved protein, conta	94.0
PRK03629	429	tolB translocation protein TolB; Provisional	93.91
PRK04792	448	tolB translocation protein TolB; Provisional	93.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	93.79
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	93.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	93.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	93.67
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.4
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.32
COG4946	668	Uncharacterized protein related to the periplasmic	93.1
COG4946	668	Uncharacterized protein related to the periplasmic	93.0
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	92.92
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	92.9
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.75
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.61
KOG2139	445	consensus WD40 repeat protein [General function pr	92.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	92.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.34
PRK05137	435	tolB translocation protein TolB; Provisional	92.26
KOG3621	726	consensus WD40 repeat-containing protein [General	92.16
KOG4714	319	consensus Nucleoporin [Nuclear structure]	92.12
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.92
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.82
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	91.7
KOG0280	339	consensus Uncharacterized conserved protein [Amino	91.41
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	91.36
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	91.16
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	91.12
KOG2111	346	consensus Uncharacterized conserved protein, conta	91.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.06
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	90.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	90.63
PRK00178	430	tolB translocation protein TolB; Provisional	90.62
PRK04792	448	tolB translocation protein TolB; Provisional	90.38
PRK01029	428	tolB translocation protein TolB; Provisional	90.18
KOG4227	609	consensus WD40 repeat protein [General function pr	90.13
KOG0644	1113	consensus Uncharacterized conserved protein, conta	90.08
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	90.05
PRK01029	428	tolB translocation protein TolB; Provisional	89.73
KOG4547	541	consensus WD40 repeat-containing protein [General	89.28
KOG1963	792	consensus WD40 repeat protein [General function pr	88.98
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	88.73
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	88.54
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	87.75
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	87.36
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	86.96
KOG0280	339	consensus Uncharacterized conserved protein [Amino	86.83
COG3391	381	Uncharacterized conserved protein [Function unknow	86.37
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	86.31
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	86.25
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	86.14
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	85.03
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	84.78
KOG3616	1636	consensus Selective LIM binding factor [Transcript	84.34
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	83.17
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	82.92
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	82.9
KOG1310	758	consensus WD40 repeat protein [General function pr	82.75
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	82.64
PRK04043	419	tolB translocation protein TolB; Provisional	81.79
KOG4532	344	consensus WD40-like repeat containing protein [Gen	81.76
KOG2444	238	consensus WD40 repeat protein [General function pr	81.68
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	80.9

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-66  Score=501.18  Aligned_cols=229  Identities=48%  Similarity=0.649  Sum_probs=217.4

Q ss_pred             eeeecccCCCceecccccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEE
Q 044877            8 VQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWI   87 (244)
Q Consensus         8 ~~~~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~l   87 (244)
                      ||..+     .|.|.|+|||+++++|+|+|||++|+||+||.+|+|||||+ .+++|||+|||||+||+|||+|+||+||
T Consensus       413 v~~~~-----kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  413 VQGKN-----KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             ccCcc-----eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEE
Confidence            77765     89999999999999999999999999999999999999999 6678999999999999999999999999


Q ss_pred             EEeCCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCC
Q 044877           88 LGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGK  167 (244)
Q Consensus        88 LaT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~  167 (244)
                      ||||++||+|+|+.++|++|++++||+++|++++|+||+|||+|||++-+.....++ |+|+|+||.|++|++||||+||
T Consensus       487 l~Tc~tyLlLi~t~~kdg~~~~~~Gf~k~~~~k~p~pk~LkL~PeHlA~~~~~~k~~-a~Fs~nTg~g~qE~tIVtS~G~  565 (644)
T KOG2395|consen  487 LATCKTYLLLIDTLIKDGDYAGKTGFEKFMGNKIPKPKRLKLRPEHLAGIDNEFKGT-AKFSFNTGIGAQERTIVTSTGP  565 (644)
T ss_pred             EEecccEEEEEEEecccCCccccccccccccccCCCceeeecCHHHhhhhhhhccCc-eeEEEeccCCcceeeEEEeecc
Confidence            999999999999999999999999999999999999999999999776554455555 9999999999999999999999


Q ss_pred             eEEEEechhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCC---CCCCCEEEEcCCceeeeeecccC
Q 044877          168 FSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSD---LPEAPLVIATPMKVSSFSISSRQ  243 (244)
Q Consensus       168 fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~---~~~~~iiva~~~~v~~~~~~~~~  243 (244)
                      |+|+|||+.||+|.++|||+++++..|++|.+...++.+|.++||+|+|.+..   .+.++.++|||..|++.+++++|
T Consensus       566 f~V~WnLd~VkNg~~~~Yri~r~~~~v~adnf~fg~ds~Viv~l~dDv~~v~~~s~k~p~r~vi~tp~k~s~~d~~~~~  644 (644)
T KOG2395|consen  566 FSVSWNLDRVKNGKHYSYRIRRYLALVVADNFEFGEDSIVIVALPDDVFKVSVRSLKRPARLVIATPAKVSSQDLSGKR  644 (644)
T ss_pred             eEEEEEhhHhhccCcchhhhhhhccceeEeeEEecCCceEEEecccchhhhcccccCCCCCceecccccccccccccCC
Confidence            99999999999999999999999999999999999999999999999999975   57899999999999999999986

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=100.00  E-value=1.8e-65  Score=516.85  Aligned_cols=202  Identities=44%  Similarity=0.689  Sum_probs=192.3

Q ss_pred             ceecccccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEE
Q 044877           18 VLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL   97 (244)
Q Consensus        18 ~~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L   97 (244)
                      -+.|.|+|||+++++|+|+|||++|+||+||.+|+|||||..+. +|||+|||||+||+|||||+||+||||||++||+|
T Consensus       565 k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlL  643 (794)
T PF08553_consen  565 KLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK-RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLL  643 (794)
T ss_pred             ceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccch-hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEE
Confidence            35599999999999999999999999999999999999998765 69999999999999999999999999999999999


Q ss_pred             EEeeeccCCCCcccccccccC-CCCCcceeeeeCccchhhc----CCccceeeeeeeeecCCCCcceEEEEeeCCeEEEE
Q 044877           98 ICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLA----GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIW  172 (244)
Q Consensus        98 ~dt~~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~----G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvW  172 (244)
                      +|+.+++|+|+|++||+++|+ ++||+||||+|+|||++++    |++++||+|+||  +|.|++|++||||+|+|+|+|
T Consensus       644 i~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fn--t~~~~~E~~IvtstG~f~v~W  721 (794)
T PF08553_consen  644 IDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFN--TGIGKQETSIVTSTGPFVVTW  721 (794)
T ss_pred             EEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEe--cCCCCccceEEEeccCEEEEE
Confidence            999999999999999999998 7999999999999999887    889999999999  778889999999999999999


Q ss_pred             echhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCceeeeeecc
Q 044877          173 NFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISS  241 (244)
Q Consensus       173 n~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~  241 (244)
                      ||++||+|.++            ||.|+||+++|+     +|||+||++  ++|||||||||+|+++.+
T Consensus       722 nf~kV~~g~~~------------~Y~ikry~~~V~-----~dnF~fg~d--~~vival~~dV~m~~~~~  771 (794)
T PF08553_consen  722 NFKKVKRGKKD------------PYQIKRYDENVV-----ADNFKFGSD--KNVIVALPNDVNMVKKKS  771 (794)
T ss_pred             EHHHHhCCCCC------------ceEEEEcCCceE-----EccceeCCC--CcEEEEccchhhhhhhhh
Confidence            99999999998            568999999998     889999985  899999999999999865

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=100.00  E-value=5.7e-59  Score=449.09  Aligned_cols=201  Identities=28%  Similarity=0.461  Sum_probs=190.3

Q ss_pred             eecccccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEE
Q 044877           19 LNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILI   98 (244)
Q Consensus        19 ~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~   98 (244)
                      +--.|+|||+++++|+|++|+++|+||+||.+|+|||||+.+. +|||+||+||+.|.+|++|+||+||||||.+||+|+
T Consensus       551 i~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~  629 (776)
T COG5167         551 IKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLT  629 (776)
T ss_pred             eeeeeehhccccccccccccccCceEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeecceEEEE
Confidence            3457899999999999999999999999999999999999876 599999999999999999999999999999999999


Q ss_pred             EeeeccCCCCcccccccccC-CCCCcceeeeeCccchh----hcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877           99 CTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSH----LAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus        99 dt~~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~----~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      |+.+++++++|..||.++|+ ++||+|+||||+|||++    ++.+++.||||+||  ||.+++|++||||+|||+|.||
T Consensus       630 d~~ik~g~~aGr~GF~ksF~~~ekpkpkrLql~PeH~A~i~~~~K~~i~FTpAkFn--TGIda~E~tIVtStGpy~IsWn  707 (776)
T COG5167         630 DVPIKYGQPAGRDGFLKSFPASEKPKPKRLQLKPEHLAHINTYTKEEIDFTPAKFN--TGIDASENTIVTSTGPYVISWN  707 (776)
T ss_pred             ecccccCCccccchhhhcCccccCCCcceeecCHHHHHHHHHhhccCcccchhhcc--cccCcccceEEeccCceEEEEe
Confidence            99999999999999999998 78999999999999984    45589999999999  8999999999999999999999


Q ss_pred             chhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCceeeeeecc
Q 044877          174 FQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISS  241 (244)
Q Consensus       174 ~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~  241 (244)
                      |+.||+|..+            +|+|+||+.+||     +|||+||++  ++||||||+||+|++.++
T Consensus       708 Ld~vlng~~y------------sY~irry~a~Vv-----AdnFeFG~D--~~vIValpDDV~~v~v~s  756 (776)
T COG5167         708 LDDVLNGKLY------------SYQIRRYSALVV-----ADNFEFGED--SNVIVALPDDVRKVNVRS  756 (776)
T ss_pred             hhhhhcCCcc------------hhhheeccccee-----eccccccCC--cceEEEccchhhhhhhhh
Confidence            9999999987            568999999988     999999985  899999999999999866

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.57  E-value=8.7e-15  Score=135.19  Aligned_cols=134  Identities=14%  Similarity=0.321  Sum_probs=114.4

Q ss_pred             CCceecccc-----cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEE
Q 044877           16 APVLNWSQG-----HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILG   89 (244)
Q Consensus        16 ~~~~~~~~~-----k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLa   89 (244)
                      -++.-|+--     |.|-.+++.++|++..++. +.+|..|++|++||.+...... .|.|+.||||||.+|++|.++|+
T Consensus       155 ~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~-~lsGh~DtIt~lsls~~gs~lls  233 (338)
T KOG0265|consen  155 GTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY-TLSGHADTITGLSLSRYGSFLLS  233 (338)
T ss_pred             ceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE-EeecccCceeeEEeccCCCcccc
Confidence            345566544     4677789999999999886 9999999999999998765444 68999999999999999999999


Q ss_pred             eCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeee--eeeeecCCCCcceEEEEeeC
Q 044877           90 TTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA--QFSWVTENGKQERHLVATVG  166 (244)
Q Consensus        90 T~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a--kFn~~tg~~~~E~~IvtStG  166 (244)
                      +++ ++|++||.++          |.       |+-|+++      .+.|+.++|++.  +++|.+.   ...+-.+|.+
T Consensus       234 nsMd~tvrvwd~rp----------~~-------p~~R~v~------if~g~~hnfeknlL~cswsp~---~~~i~ags~d  287 (338)
T KOG0265|consen  234 NSMDNTVRVWDVRP----------FA-------PSQRCVK------IFQGHIHNFEKNLLKCSWSPN---GTKITAGSAD  287 (338)
T ss_pred             ccccceEEEEEecc----------cC-------CCCceEE------EeecchhhhhhhcceeeccCC---CCcccccccc
Confidence            996 7899999987          55       8889999      788999999998  9999752   5778889999


Q ss_pred             CeEEEEechh
Q 044877          167 KFSVIWNFQQ  176 (244)
Q Consensus       167 ~fvvvWn~~k  176 (244)
                      +|+++||...
T Consensus       288 r~vyvwd~~~  297 (338)
T KOG0265|consen  288 RFVYVWDTTS  297 (338)
T ss_pred             ceEEEeeccc
Confidence            9999999754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.41  E-value=9.7e-13  Score=119.24  Aligned_cols=114  Identities=21%  Similarity=0.282  Sum_probs=89.8

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCc
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTT  109 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~  109 (244)
                      .-.++|..+++ .|++||.||.+|.||.+.   .....+-+|+||+++.+|+||+++||.|+ .+|+|+|-.        
T Consensus       146 D~V~Si~v~~h-eIvaGS~DGtvRtydiR~---G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~--------  213 (307)
T KOG0316|consen  146 DGVSSIDVAEH-EIVAGSVDGTVRTYDIRK---GTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE--------  213 (307)
T ss_pred             CceeEEEeccc-EEEeeccCCcEEEEEeec---ceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccc--------
Confidence            34678888776 699999999999999954   44456889999999999999999999997 679999953        


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                                   ..++|+      .|.|+...=.+-.+...   ...+.++.+|.+.+|+.|||..-.
T Consensus       214 -------------tGklL~------sYkGhkn~eykldc~l~---qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  214 -------------TGKLLK------SYKGHKNMEYKLDCCLN---QSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             -------------hhHHHH------Hhcccccceeeeeeeec---ccceeEEeccCCceEEEEEeccce
Confidence                         345777      78887643334433321   346899999999999999997644

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.29  E-value=1.5e-11  Score=123.71  Aligned_cols=133  Identities=17%  Similarity=0.308  Sum_probs=106.5

Q ss_pred             CCCceeccccccc------CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEE
Q 044877           15 GAPVLNWSQGHQF------SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWI   87 (244)
Q Consensus        15 ~~~~~~~~~~k~Y------~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~l   87 (244)
                      |-..--|+.-+-|      .-..+..|++++|+.+ +|+||.|-.+|+||..++...+ .+-||..||++|++||+|+||
T Consensus       514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR-iF~GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR-IFTGHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE-EecCCCCceEEEEEcCCCceE
Confidence            3345667777655      2345688999999876 9999999999999999887777 678999999999999999999


Q ss_pred             EEeCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeC
Q 044877           88 LGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVG  166 (244)
Q Consensus        88 LaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG  166 (244)
                      ++... ..|+|||..                     ..+++.      .+.||.-.-..-.|+.   +  +.-.++++.|
T Consensus       593 aSg~ed~~I~iWDl~---------------------~~~~v~------~l~~Ht~ti~SlsFS~---d--g~vLasgg~D  640 (707)
T KOG0263|consen  593 ASGDEDGLIKIWDLA---------------------NGSLVK------QLKGHTGTIYSLSFSR---D--GNVLASGGAD  640 (707)
T ss_pred             eecccCCcEEEEEcC---------------------CCcchh------hhhcccCceeEEEEec---C--CCEEEecCCC
Confidence            88774 779999972                     234555      5666655555567773   2  6899999999


Q ss_pred             CeEEEEechhhhcC
Q 044877          167 KFSVIWNFQQVKNG  180 (244)
Q Consensus       167 ~fvvvWn~~kV~~g  180 (244)
                      +-|-+||+.++...
T Consensus       641 nsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  641 NSVRLWDLTKVIEL  654 (707)
T ss_pred             CeEEEEEchhhccc
Confidence            99999999999876

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=2.4e-10  Score=109.69  Aligned_cols=119  Identities=24%  Similarity=0.330  Sum_probs=92.7

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~  108 (244)
                      +..+|+++++.|+ |++||.||.||+||.+++.+.+ .|++|.++|+++++++||++|++.+ +..|++||+.-    + 
T Consensus       247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~----~-  320 (456)
T KOG0266|consen  247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET----G-  320 (456)
T ss_pred             CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC----C-
Confidence            4469999999997 9999999999999999887676 5899999999999999999999888 57799999842    1 


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCcc--ceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNN--KFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG  180 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~--~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g  180 (244)
                           ..         +++.      .+.+...  ..+...|+.     .++.+++++.++-+-+||+....--
T Consensus       321 -----~~---------~~~~------~~~~~~~~~~~~~~~fsp-----~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  321 -----SK---------LCLK------LLSGAENSAPVTSVQFSP-----NGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             -----ce---------eeee------cccCCCCCCceeEEEECC-----CCcEEEEecCCCeEEEEEccCCcce
Confidence                 00         0222      2222222  356677872     2689999999999999999966533

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.09  E-value=3e-09  Score=102.10  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=89.2

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEecc-ccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSN-SMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~-~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      ..-+.+++++++|. |++|+.|+.||+||.. ..++.|+ |.||..+|++++|+|+|+.|++.+ +.+++|||..-    
T Consensus       203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~----  277 (456)
T KOG0266|consen  203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT----  277 (456)
T ss_pred             ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC----
Confidence            34489999999996 9999999999999994 4466675 679999999999999999998887 58899999741    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                                       ..+++      .+.+|.-.-+..-|+  .   .+..++++|.+.++.+||..+=.
T Consensus       278 -----------------~~~~~------~l~~hs~~is~~~f~--~---d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  278 -----------------GECVR------KLKGHSDGISGLAFS--P---DGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             -----------------CeEEE------eeeccCCceEEEEEC--C---CCCEEEEcCCCccEEEEECCCCc
Confidence                             11223      344444434445777  2   25778888889999999987544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.97  E-value=5.6e-09  Score=105.82  Aligned_cols=178  Identities=24%  Similarity=0.284  Sum_probs=110.4

Q ss_pred             CCCceeccccc-----ccCCCCceeEEEecC--CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEE
Q 044877           15 GAPVLNWSQGH-----QFSRGTNFQCFASTG--DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWI   87 (244)
Q Consensus        15 ~~~~~~~~~~k-----~Y~~~~~Ft~vats~--~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~l   87 (244)
                      |-.|-.|--+.     -|.-++=+||||++|  +-++++||.||+||||+....+.+  ..-.+.+-||.|+++|||++.
T Consensus       389 DKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv--~W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  389 DKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV--DWNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             cccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE--eehhhhhhheeEEeccCCceE
Confidence            34466665543     345566689999999  334999999999999999765433  345688999999999999999


Q ss_pred             EEeCC-cceEEEEeee-----------ccCC---CCcccccccccCCCC--------CcceeeeeCccch--hhcCC--c
Q 044877           88 LGTTD-TYLILICTLF-----------TDKN---GTTKTGFNGRMGNKI--------AAPRLLKLTPLDS--HLAGV--N  140 (244)
Q Consensus        88 LaT~~-~~L~L~dt~~-----------~~~~---~~~~~GF~~~~~~~k--------p~pr~L~L~Pe~~--~~~G~--~  140 (244)
                      |+.|. .+.++|+|.-           ..++   +.--+||+-..++..        -.-|++-++-.++  .|.|.  .
T Consensus       467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~  546 (712)
T KOG0283|consen  467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT  546 (712)
T ss_pred             EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence            99885 6788888741           1111   112355654433211        0112222211121  22331  1


Q ss_pred             cceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCceeeeeEEEecCc
Q 044877          141 NKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDD  204 (244)
Q Consensus       141 ~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e  204 (244)
                      .+=++|.|.-   +  ++.+|+||.+.+|++|+++.--....     -+..+++.+|....-..
T Consensus       547 ~SQ~~Asfs~---D--gk~IVs~seDs~VYiW~~~~~~~~~~-----~~~~~~~~s~e~f~s~~  600 (712)
T KOG0283|consen  547 SSQISASFSS---D--GKHIVSASEDSWVYIWKNDSFNSEAS-----HKKTKSIRSYEHFSSVD  600 (712)
T ss_pred             CcceeeeEcc---C--CCEEEEeecCceEEEEeCCCCccccc-----ccccccccccccccccc
Confidence            2335788872   3  79999999999999999854332221     13444555666555433

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=98.93  E-value=5.2e-09  Score=100.02  Aligned_cols=119  Identities=19%  Similarity=0.179  Sum_probs=89.8

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~  107 (244)
                      .-.+-|++++|+|. ||+||-|-.+|+||.-+.....| ..||..=|.+|+.||||++|++.|+ +.|+|||..-    |
T Consensus       115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt----g  189 (480)
T KOG0271|consen  115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT----G  189 (480)
T ss_pred             CCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee-ecCCccEEEEEEECCCcchhhccccCCeEEEecCCC----C
Confidence            44588999999997 99999999999999988766664 6899999999999999999999997 7799999632    1


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcC-CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAG-VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      +             +..|-|+=     |..+ ..+.|+|.+-+  ++   -.++..+|-++-+.+||+..
T Consensus       190 ~-------------~~g~~l~g-----H~K~It~Lawep~hl~--p~---~r~las~skDg~vrIWd~~~  236 (480)
T KOG0271|consen  190 Q-------------QIGRALRG-----HKKWITALAWEPLHLV--PP---CRRLASSSKDGSVRIWDTKL  236 (480)
T ss_pred             C-------------cccccccC-----cccceeEEeecccccC--CC---ccceecccCCCCEEEEEccC
Confidence            1             11111110     0011 13577777666  32   35788889999999999876

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.92  E-value=9.1e-09  Score=104.40  Aligned_cols=173  Identities=21%  Similarity=0.236  Sum_probs=119.0

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~  108 (244)
                      ...+|++.+|||+ ||+|+.||+||+||...+-|--| +..|-..|++|.++.+|+.||+.|+ .++|.||..    ++.
T Consensus       351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT-FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk----RYr  425 (893)
T KOG0291|consen  351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT-FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK----RYR  425 (893)
T ss_pred             cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE-eccCCCceEEEEEEecCCEEEEeecCCeEEeeeec----ccc
Confidence            4489999999999 99999999999999987767775 5669999999999999999999995 889999963    221


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCe-EEEEech-----hhhcCCc
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKF-SVIWNFQ-----QVKNGSH  182 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~f-vvvWn~~-----kV~~g~~  182 (244)
                      +   |.                    +++.    -+|..|+..+-+.++|-+++++-+.| +++|+++     +||.|..
T Consensus       426 N---fR--------------------Tft~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE  478 (893)
T KOG0291|consen  426 N---FR--------------------TFTS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE  478 (893)
T ss_pred             e---ee--------------------eecC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC
Confidence            1   22                    3332    23567776665667899999999999 5699987     5888876


Q ss_pred             cccc---cc-cC--C-ceeeeeEEEecCcccccc---------ceecCccccCCCCCCCEEEEcCC-ceeeee
Q 044877          183 ECYQ---NQ-EG--L-KSCYCYKIVLKDDSIVDS---------RFMHDKFAVSDLPEAPLVIATPM-KVSSFS  238 (244)
Q Consensus       183 ~~y~---~~-~~--l-~~~~~Y~i~~~~e~iv~~---------~f~~d~f~~~~~~~~~iiva~~~-~v~~~~  238 (244)
                      -+-.   +. .|  | ..-+++.|++-+  |+++         .=++=++.|.-+ -+.|-|||-+ .+.-++
T Consensus       479 gPVs~l~f~~~~~~LaS~SWDkTVRiW~--if~s~~~vEtl~i~sdvl~vsfrPd-G~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  479 GPVSGLSFSPDGSLLASGSWDKTVRIWD--IFSSSGTVETLEIRSDVLAVSFRPD-GKELAVATLDGQITFFD  548 (893)
T ss_pred             CcceeeEEccccCeEEeccccceEEEEE--eeccCceeeeEeeccceeEEEEcCC-CCeEEEEEecceEEEEE
Confidence            4321   00 00  0 112445555531  2222         112235666643 2789999887 444443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.90  E-value=4e-08  Score=79.77  Aligned_cols=113  Identities=17%  Similarity=0.272  Sum_probs=81.3

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~  108 (244)
                      ...++++.++++. +++|+.+|.|++||..+.+... .++++..+|.+++++|+++++++++ +..|.+||...      
T Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~------  166 (289)
T cd00200          94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT------  166 (289)
T ss_pred             CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc------
Confidence            3689999999877 6666679999999997665444 4667888999999999999999888 78899999741      


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                     .+.++      .+.++....+...|+  .   .++.+++++.+..+.+||++.
T Consensus       167 ---------------~~~~~------~~~~~~~~i~~~~~~--~---~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         167 ---------------GKCVA------TLTGHTGEVNSVAFS--P---DGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             ---------------cccce------eEecCccccceEEEC--C---CcCEEEEecCCCcEEEEECCC
Confidence                           01111      011122223334454  2   246788888899999999974

>PTZ00421 coronin; Provisional

Probab=98.88  E-value=3e-08  Score=97.11  Aligned_cols=115  Identities=10%  Similarity=0.042  Sum_probs=81.8

Q ss_pred             CCceeEEEecC-CCc-EEEeCCCCcEEEEeccccc------cceecCCCCCCCeeEEEeCCCCC-EEEEeC-CcceEEEE
Q 044877           30 GTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMR------QAKTAFPGLGSPIRYVDVTYDGR-WILGTT-DTYLILIC   99 (244)
Q Consensus        30 ~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r------~aKt~lpglGdPI~~vdvS~DG~-~lLaT~-~~~L~L~d   99 (244)
                      ...+++++++| ++. ||+||.||.||+||.....      .....|.++..+|.+|+++|++. +|++++ +.+|+|||
T Consensus        75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD  154 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD  154 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence            34689999999 776 9999999999999985431      11234788999999999999974 555545 67899999


Q ss_pred             eeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          100 TLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       100 t~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      ..-    +                 ..+.      .+.++........|+  + +  +..++++|.++.+.+||+++
T Consensus       155 l~t----g-----------------~~~~------~l~~h~~~V~sla~s--p-d--G~lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        155 VER----G-----------------KAVE------VIKCHSDQITSLEWN--L-D--GSLLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             CCC----C-----------------eEEE------EEcCCCCceEEEEEE--C-C--CCEEEEecCCCEEEEEECCC
Confidence            731    0                 1111      122333334455666  2 2  56788889999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.87  E-value=1.9e-08  Score=93.45  Aligned_cols=112  Identities=19%  Similarity=0.179  Sum_probs=86.9

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKN  106 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~  106 (244)
                      ..++.+|.+.|+|. +|+||.||.+||||.+..+..-. .-+..--||++|+||..||+|.|... .+.-+||+.-    
T Consensus       229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk----  304 (343)
T KOG0286|consen  229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK----  304 (343)
T ss_pred             ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc----
Confidence            34578999999999 99999999999999986554432 23456789999999999999999875 5599999862    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                                       .++.-      .+.||.++-+.-.-+  + +  +--+..+|=+.++-+|+
T Consensus       305 -----------------~e~vg------~L~GHeNRvScl~~s--~-D--G~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  305 -----------------GERVG------VLAGHENRVSCLGVS--P-D--GMAVATGSWDSTLRIWA  343 (343)
T ss_pred             -----------------cceEE------EeeccCCeeEEEEEC--C-C--CcEEEecchhHheeecC
Confidence                             12222      467888877776665  2 2  57788888889998885

>PTZ00420 coronin; Provisional

Probab=98.83  E-value=6e-08  Score=96.82  Aligned_cols=70  Identities=9%  Similarity=0.115  Sum_probs=58.5

Q ss_pred             CCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           30 GTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      ....++++++|+|.  +|+||.||.||+||..+++... .+. ++++|.+++++|||++|+++|. ..|+|||.+
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R  197 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR  197 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence            35689999999886  5799999999999998765444 344 6789999999999999998884 779999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.83  E-value=1e-07  Score=77.37  Aligned_cols=110  Identities=18%  Similarity=0.260  Sum_probs=80.2

Q ss_pred             CceeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~  108 (244)
                      ..+++++.+++| .|++|+.+|.|++||....+..+ .+.++..+|.++.++||+.++++.+ +..|.+||..-      
T Consensus       178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~------  250 (289)
T cd00200         178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT------  250 (289)
T ss_pred             cccceEEECCCcCEEEEecCCCcEEEEECCCCceec-chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC------
Confidence            368999999999 59999999999999997665444 4556788999999999999998888 68899999631      


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                                     .+.+.      .+.++....+...|+  .   .+..+++++.+..+.+|+
T Consensus       251 ---------------~~~~~------~~~~~~~~i~~~~~~--~---~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         251 ---------------GECVQ------TLSGHTNSVTSLAWS--P---DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ---------------ceeEE------EccccCCcEEEEEEC--C---CCCEEEEecCCCeEEecC
Confidence                           11111      111222233344554  2   257888889999999996

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=98.83  E-value=4e-08  Score=94.52  Aligned_cols=137  Identities=15%  Similarity=0.206  Sum_probs=97.7

Q ss_pred             CCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeecc
Q 044877           29 RGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTD  104 (244)
Q Consensus        29 ~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~  104 (244)
                      -..++.|++++|.+.  ||+||.||+|+|||++..+..-..+++|.+.|..|.+||+-.-|||++  +..|.+||..-..
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            356789999999554  899999999999999988766667899999999999999999999887  6789999985321


Q ss_pred             CCCCcccccccccC-CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCcc
Q 044877          105 KNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHE  183 (244)
Q Consensus       105 ~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~  183 (244)
                              =+++-. .+.-.|.+|        ++-+.+.+.=.-|+|.+  ...=.+.+.+.++-+-||.....+-+..+
T Consensus       351 --------~eq~~eda~dgppEll--------F~HgGH~~kV~DfsWnp--~ePW~I~SvaeDN~LqIW~~s~~i~~~e~  412 (422)
T KOG0264|consen  351 --------EEQSPEDAEDGPPELL--------FIHGGHTAKVSDFSWNP--NEPWTIASVAEDNILQIWQMAENIYNPED  412 (422)
T ss_pred             --------cccChhhhccCCccee--------EEecCcccccccccCCC--CCCeEEEEecCCceEEEeeccccccCccc
Confidence                    222211 112223333        23234555567899975  21233444556788999999887766543

>PTZ00420 coronin; Provisional

Probab=98.82  E-value=5.9e-08  Score=96.85  Aligned_cols=114  Identities=14%  Similarity=0.156  Sum_probs=79.8

Q ss_pred             CCceeEEEecCC-Cc-EEEeCCCCcEEEEecccccc-------ceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEE
Q 044877           30 GTNFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQ-------AKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILI   98 (244)
Q Consensus        30 ~~~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r~-------aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~   98 (244)
                      ....++++++|+ +. ||+||.||.||+||......       ....+.+|..+|.+|+++|++.++|++ + +.+|+||
T Consensus        74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence            346899999996 55 99999999999999864321       111467899999999999999998755 3 6889999


Q ss_pred             EeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877           99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus        99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      |..-    +               . ....+.        +....+...|++   +  +..+++++.++-+.+||+++
T Consensus       154 Dl~t----g---------------~-~~~~i~--------~~~~V~Slswsp---d--G~lLat~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        154 DIEN----E---------------K-RAFQIN--------MPKKLSSLKWNI---K--GNLLSGTCVGKHMHIIDPRK  198 (568)
T ss_pred             ECCC----C---------------c-EEEEEe--------cCCcEEEEEECC---C--CCEEEEEecCCEEEEEECCC
Confidence            9741    0               0 111111        111234556662   2  45666677799999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.81  E-value=4.1e-08  Score=90.68  Aligned_cols=116  Identities=21%  Similarity=0.250  Sum_probs=87.9

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcc
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTK  110 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~  110 (244)
                      .+-++++++|+ ..+||-||.+||||..+++..+ .|-||+.-|.+|++|+|.+-|++.+ +++|+||++.-       .
T Consensus        66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~-~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-------~  137 (315)
T KOG0279|consen   66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTR-RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-------V  137 (315)
T ss_pred             ecceEEccCCceEEeccccceEEEEEecCCcEEE-EEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-------c
Confidence            57789999998 8899999999999998875444 6899999999999999999999999 58899999851       1


Q ss_pred             cccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          111 TGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                      .-|+.                   +.-++.-=-+.-+|+..   ..+..++.+|-++.|-+||++...
T Consensus       138 ck~t~-------------------~~~~~~~WVscvrfsP~---~~~p~Ivs~s~DktvKvWnl~~~~  183 (315)
T KOG0279|consen  138 CKYTI-------------------HEDSHREWVSCVRFSPN---ESNPIIVSASWDKTVKVWNLRNCQ  183 (315)
T ss_pred             EEEEE-------------------ecCCCcCcEEEEEEcCC---CCCcEEEEccCCceEEEEccCCcc
Confidence            11221                   11111222345577732   235778889999999999998765

>PTZ00421 coronin; Provisional

Probab=98.81  E-value=7.2e-08  Score=94.47  Aligned_cols=71  Identities=10%  Similarity=0.108  Sum_probs=60.5

Q ss_pred             CCceeEEEecCCC--cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           30 GTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      ...+.+++++|++  .||+||.||.||+||..+++... .+.++.++|.+|+++|||+.|++++. ..|+|||.+
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~-~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r  198 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE-VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR  198 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence            3458899999975  39999999999999998765444 57889999999999999999988884 789999974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=98.78  E-value=4.9e-08  Score=93.45  Aligned_cols=121  Identities=20%  Similarity=0.258  Sum_probs=93.9

Q ss_pred             CCCCc-eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEe-----CCCCCEEEEeC-CcceEEEE
Q 044877           28 SRGTN-FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDV-----TYDGRWILGTT-DTYLILIC   99 (244)
Q Consensus        28 ~~~~~-Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdv-----S~DG~~lLaT~-~~~L~L~d   99 (244)
                      +...+ +.||+.+|||. ||+|+.||.|||||-.++.+---.|+||.-.|++++.     .|.++.|++.+ ++.++|||
T Consensus       154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd  233 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD  233 (480)
T ss_pred             cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence            44444 88999999998 9999999999999987666554479999999999975     57888766555 48899999


Q ss_pred             eeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh---
Q 044877          100 TLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ---  176 (244)
Q Consensus       100 t~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k---  176 (244)
                      +..                     .+++.      .+.||....|.-+.-    +  +.-.-.+|-++-+-+|+..+   
T Consensus       234 ~~~---------------------~~~~~------~lsgHT~~VTCvrwG----G--~gliySgS~DrtIkvw~a~dG~~  280 (480)
T KOG0271|consen  234 TKL---------------------GTCVR------TLSGHTASVTCVRWG----G--EGLIYSGSQDRTIKVWRALDGKL  280 (480)
T ss_pred             ccC---------------------ceEEE------EeccCccceEEEEEc----C--CceEEecCCCceEEEEEccchhH
Confidence            853                     23444      678998877776652    1  45667888999999999665   


Q ss_pred             --hhcCC
Q 044877          177 --VKNGS  181 (244)
Q Consensus       177 --V~~g~  181 (244)
                        .++|.
T Consensus       281 ~r~lkGH  287 (480)
T KOG0271|consen  281 CRELKGH  287 (480)
T ss_pred             HHhhccc
Confidence              55554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=98.75  E-value=4.9e-08  Score=93.93  Aligned_cols=110  Identities=17%  Similarity=0.254  Sum_probs=81.5

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNG  107 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~  107 (244)
                      .++-+|+++|+|+ ||+||.|+.+|+||++..+... ++|+|-+-|+.|.++|++-+.|+||  +++++||.+.      
T Consensus       346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly-~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~------  418 (459)
T KOG0272|consen  346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY-TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR------  418 (459)
T ss_pred             cceeeEeECCCceEEeecCCCCcEEEeeecccccce-ecccccchhhheEecccCCeEEEEcccCcceeeecCC------
Confidence            3577999999999 9999999999999998877665 6899999999999999665556665  7999999973      


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                          +|.           .++      .+.||.-+--+--.+     ....-.+.+|-++-+-.|.
T Consensus       419 ----~~~-----------~~k------sLaGHe~kV~s~Dis-----~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  419 ----TWS-----------PLK------SLAGHEGKVISLDIS-----PDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ----Ccc-----------cch------hhcCCccceEEEEec-----cCCceEEEeccCceeeecc
Confidence                133           444      677876533333222     2245566666677777774

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=98.75  E-value=3.1e-08  Score=95.30  Aligned_cols=120  Identities=19%  Similarity=0.184  Sum_probs=93.0

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT  109 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~  109 (244)
                      .+.++|+.++|. +++|+.|..=|+||.+++++-. .|.||-.||.+|++||+|-.|+..+ +++.++||.+-.      
T Consensus       305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im-~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------  377 (459)
T KOG0272|consen  305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM-FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------  377 (459)
T ss_pred             ccceeEecCCCceeeccCccchhheeecccCcEEE-EecccccceeeEeECCCceEEeecCCCCcEEEeeeccc------
Confidence            467999999999 8999999999999999999887 6899999999999999998874333 699999997531      


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech-----hhhcCCcc
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ-----QVKNGSHE  183 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~-----kV~~g~~~  183 (244)
                                     +.|-+-|.|..+      .+.-+|+  +  ..+-..+.+|-++.+-+|+-+     +.++|...
T Consensus       378 ---------------~~ly~ipAH~nl------VS~Vk~~--p--~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~  431 (459)
T KOG0272|consen  378 ---------------SELYTIPAHSNL------VSQVKYS--P--QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG  431 (459)
T ss_pred             ---------------ccceecccccch------hhheEec--c--cCCeEEEEcccCcceeeecCCCcccchhhcCCcc
Confidence                           225545555533      3455666  2  235778888999999998743     56666654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.70  E-value=1.9e-07  Score=86.42  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=85.2

Q ss_pred             CCceeEEEecCCC---cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccC
Q 044877           30 GTNFQCFASTGDG---SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~~G---~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~  105 (244)
                      ++=++||.++|+-   .|+.+|.|+.+|+||+.+.+ .++.++|+..-++-+.+||||..+.+.-+ ..++|||...   
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~---  223 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE---  223 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC---
Confidence            4448999999964   39999999999999998875 66788999999999999999997776665 5599999742   


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                         +               +.|.       ..++...-..--|+  +    .+.++.+.+|+-+.+||++.
T Consensus       224 ---~---------------k~ly-------sl~a~~~v~sl~fs--p----nrywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  224 ---G---------------KNLY-------SLEAFDIVNSLCFS--P----NRYWLCAATATSIKIWDLES  263 (315)
T ss_pred             ---C---------------ceeE-------eccCCCeEeeEEec--C----CceeEeeccCCceEEEeccc
Confidence               1               2222       22222222233565  2    58999999999999999864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.69  E-value=1.5e-07  Score=92.67  Aligned_cols=122  Identities=20%  Similarity=0.239  Sum_probs=88.1

Q ss_pred             ccccc--CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc---cceecCCCCCCCeeEEEeCCCCCEEEEeCC-cce
Q 044877           23 QGHQF--SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR---QAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYL   95 (244)
Q Consensus        23 ~~k~Y--~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L   95 (244)
                      +.+..  ..+.+-+|+|.+|+|. +|+|..||.|++|.+.+..   .++  +..+-.||+.|+.||||+||+|+-. .-+
T Consensus       434 ~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~--~~~h~a~iT~vaySpd~~yla~~Da~rkv  511 (603)
T KOG0318|consen  434 QTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK--LLEHRAAITDVAYSPDGAYLAAGDASRKV  511 (603)
T ss_pred             CCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee--eecccCCceEEEECCCCcEEEEeccCCcE
Confidence            44444  3445578999999998 9999999999999997633   344  3458899999999999999966644 559


Q ss_pred             EEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877           96 ILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus        96 ~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      .|||..-.         |.        .   +           ..--|+.||-+...=....+++..+|-+..||+|+++
T Consensus       512 v~yd~~s~---------~~--------~---~-----------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  512 VLYDVASR---------EV--------K---T-----------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             EEEEcccC---------ce--------e---c-----------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            99997421         11        0   0           1245667754422212346899999999999999998


Q ss_pred             hh
Q 044877          176 QV  177 (244)
Q Consensus       176 kV  177 (244)
                      +=
T Consensus       561 kP  562 (603)
T KOG0318|consen  561 KP  562 (603)
T ss_pred             Ch
Confidence            63

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.67  E-value=8.5e-08  Score=92.18  Aligned_cols=132  Identities=17%  Similarity=0.299  Sum_probs=97.9

Q ss_pred             cCCCceecccccccCCCCceeE-----EEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE
Q 044877           14 AGAPVLNWSQGHQFSRGTNFQC-----FASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL   88 (244)
Q Consensus        14 ~~~~~~~~~~~k~Y~~~~~Ft~-----vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL   88 (244)
                      ++-....|.=.|.|.+++.|..     |++++. .+++|+.|+.||+||.++..+.. ..| +|..|++|++|+||.-||
T Consensus       281 ~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~-sv~-~gg~vtSl~ls~~g~~lL  357 (459)
T KOG0288|consen  281 ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTR-SVP-LGGRVTSLDLSMDGLELL  357 (459)
T ss_pred             ccchhhhhhhhhhheeccccccccccceEecce-eeeecccccceEEEeccCCceee-Eee-cCcceeeEeeccCCeEEe
Confidence            4566889999999999988643     445432 48999999999999988765444 457 555999999999999999


Q ss_pred             EeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCC
Q 044877           89 GTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGK  167 (244)
Q Consensus        89 aT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~  167 (244)
                      +.+ +++|.++|.+-          |+          .+...+.+- ...+  ...+.+-|+  ++   ++.+..+|.+.
T Consensus       358 sssRDdtl~viDlRt----------~e----------I~~~~sA~g-~k~a--sDwtrvvfS--pd---~~YvaAGS~dg  409 (459)
T KOG0288|consen  358 SSSRDDTLKVIDLRT----------KE----------IRQTFSAEG-FKCA--SDWTRVVFS--PD---GSYVAAGSADG  409 (459)
T ss_pred             eecCCCceeeeeccc----------cc----------EEEEeeccc-cccc--cccceeEEC--CC---CceeeeccCCC
Confidence            888 59999999753          22          111111111 1233  347888998  42   69999999999


Q ss_pred             eEEEEechh
Q 044877          168 FSVIWNFQQ  176 (244)
Q Consensus       168 fvvvWn~~k  176 (244)
                      -|++|++..
T Consensus       410 sv~iW~v~t  418 (459)
T KOG0288|consen  410 SVYIWSVFT  418 (459)
T ss_pred             cEEEEEccC
Confidence            999999653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.65  E-value=1.8e-07  Score=87.25  Aligned_cols=119  Identities=20%  Similarity=0.209  Sum_probs=92.8

Q ss_pred             CCceeEEEecC--CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccC
Q 044877           30 GTNFQCFASTG--DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~--~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~  105 (244)
                      .-.|++.+.+|  +|+-+....|+.++.||.++++++...-..||..+..+|+.|+-+++|+||  +.||+|||++-+  
T Consensus       170 ~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--  247 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--  247 (370)
T ss_pred             cceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--
Confidence            34599999999  777777778999999999999877655578999999999999999999999  488999999631  


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                                        .--++=.|+|.|+      .=.-|||  +.  ..+-++.++++.-|+.|....|-
T Consensus       248 ------------------k~pv~el~~HsHW------vW~VRfn--~~--hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  248 ------------------KFPVQELPGHSHW------VWAVRFN--PE--HDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             ------------------CccccccCCCceE------EEEEEec--Cc--cceEEEecCCCceeEEEeccccc
Confidence                              1123323444433      2345888  32  25778888999999999998886

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.65  E-value=8.3e-08  Score=92.87  Aligned_cols=72  Identities=21%  Similarity=0.399  Sum_probs=63.8

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEee
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTL  101 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~  101 (244)
                      +...++|.+++|||- +++|+.||.+|+||...+. .-+.||||-.||+.|.|+-||=|++.+|++. ++|||.+
T Consensus       346 s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  346 SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence            445699999999999 7999999999999998775 4346999999999999999999999999744 9999975

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.64  E-value=4.7e-07  Score=91.98  Aligned_cols=114  Identities=7%  Similarity=0.097  Sum_probs=81.7

Q ss_pred             CCceeEEEecCC-Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEeeeccC
Q 044877           30 GTNFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      ..++++++.++. +. ||+|+.||.||+||..+.+..+ .+.++.++|.+|+++| ||.+|++++ +.+|+|||....  
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~-~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~--  608 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT-EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG--  608 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE-EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC--
Confidence            445788888873 44 9999999999999997765444 5688999999999996 888888777 578999997420  


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                         ..+.      .+..+ .......|+  .  ..+..++++|.+..+.+||++.
T Consensus       609 -------------------~~~~------~~~~~-~~v~~v~~~--~--~~g~~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        609 -------------------VSIG------TIKTK-ANICCVQFP--S--ESGRSLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             -------------------cEEE------EEecC-CCeEEEEEe--C--CCCCEEEEEeCCCeEEEEECCC
Confidence                               1111      11111 122344554  2  2367899999999999999875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.64  E-value=3.7e-08  Score=95.82  Aligned_cols=155  Identities=21%  Similarity=0.307  Sum_probs=106.3

Q ss_pred             cccCCCCc-eeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           25 HQFSRGTN-FQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        25 k~Y~~~~~-Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      +.|+-.++ .+|+-..| .|+ +++|+.||.|.||+....+...+++-||..||..+.+|++|+-+|+++ +.+|+|||+
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            34444555 78888889 889 899999999999999874434445788999999999999999999887 799999999


Q ss_pred             eeccCCCCcccccccccCCCCCcceeeeeCccc--hhhcCC---------------------cc-ceeeeeeeeecCCCC
Q 044877          101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLD--SHLAGV---------------------NN-KFHKAQFSWVTENGK  156 (244)
Q Consensus       101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~--~~~~G~---------------------~~-~Ft~akFn~~tg~~~  156 (244)
                      ..    |.-..    +|... -.|-+++.+|.+  +.+.|.                     .+ .-....|-     +.
T Consensus       288 ET----G~~~~----~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~-----~~  353 (503)
T KOG0282|consen  288 ET----GQVLS----RFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV-----DE  353 (503)
T ss_pred             cc----ceEEE----EEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc-----cC
Confidence            64    22222    23211 246778887765  323332                     11 11122443     33


Q ss_pred             cceEEEEeeCCeEEEEechhhhcCCccccccccCCceeee
Q 044877          157 QERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYC  196 (244)
Q Consensus       157 ~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~  196 (244)
                      +.+.|.+|.++-+++|+++.=   ..-.|+..-..++|-+
T Consensus       354 g~rFissSDdks~riWe~~~~---v~ik~i~~~~~hsmP~  390 (503)
T KOG0282|consen  354 GRRFISSSDDKSVRIWENRIP---VPIKNIADPEMHTMPC  390 (503)
T ss_pred             CceEeeeccCccEEEEEcCCC---ccchhhcchhhccCcc
Confidence            689999999999999998742   2223333345566666

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.60  E-value=6.5e-08  Score=91.52  Aligned_cols=113  Identities=17%  Similarity=0.274  Sum_probs=93.3

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT  109 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~  109 (244)
                      ...|+.++.+.. +|+||.||.|++|...++.|.+-+-..|.--|+++.||.|+..||+++ +.++|+--.         
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl---------  335 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL---------  335 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc---------
Confidence            467999999877 999999999999999999888855447889999999999999999998 566777332         


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                  ...++|+      .+-||.--.+.|.|.     +.+..+|.+|++.-|-+|+.+.
T Consensus       336 ------------KSGK~LK------EfrGHsSyvn~a~ft-----~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  336 ------------KSGKCLK------EFRGHSSYVNEATFT-----DDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             ------------ccchhHH------HhcCccccccceEEc-----CCCCeEEEecCCccEEEecCcc
Confidence                        1345677      678887555678996     2379999999999999999875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.5e-06  Score=79.47  Aligned_cols=152  Identities=17%  Similarity=0.219  Sum_probs=101.1

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc--------------------------------------------c
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--------------------------------------------Q   63 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--------------------------------------------~   63 (244)
                      .+...+++.++.+|. +++.|.|..|||||...++                                            .
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            467789999999998 7888999999999997543                                            3


Q ss_pred             ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccc
Q 044877           64 AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNK  142 (244)
Q Consensus        64 aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~  142 (244)
                      .+ -++||++.|.+|+++|=+...|+++ +++|+|||.+.+                   .+--|.      ...+.++ 
T Consensus        93 lR-YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-------------------~cqg~l------~~~~~pi-  145 (311)
T KOG1446|consen   93 LR-YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-------------------KCQGLL------NLSGRPI-  145 (311)
T ss_pred             EE-EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-------------------CCceEE------ecCCCcc-
Confidence            34 4799999999999999888888776 689999998752                   111122      2333444 


Q ss_pred             eeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCC
Q 044877          143 FHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLP  222 (244)
Q Consensus       143 Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~  222 (244)
                         +-|+  +   ++=-..+++.+..+-.+|++..=+|=.               .+...+++-. .+  -.+-+|..++
T Consensus       146 ---~AfD--p---~GLifA~~~~~~~IkLyD~Rs~dkgPF---------------~tf~i~~~~~-~e--w~~l~FS~dG  199 (311)
T KOG1446|consen  146 ---AAFD--P---EGLIFALANGSELIKLYDLRSFDKGPF---------------TTFSITDNDE-AE--WTDLEFSPDG  199 (311)
T ss_pred             ---eeEC--C---CCcEEEEecCCCeEEEEEecccCCCCc---------------eeEccCCCCc-cc--eeeeEEcCCC
Confidence               4555  2   133444555555899999998866633               3444442111 11  2244566543


Q ss_pred             CCCEEEEcCCce
Q 044877          223 EAPLVIATPMKV  234 (244)
Q Consensus       223 ~~~iiva~~~~v  234 (244)
                       +-|++.|.+++
T Consensus       200 -K~iLlsT~~s~  210 (311)
T KOG1446|consen  200 -KSILLSTNASF  210 (311)
T ss_pred             -CEEEEEeCCCc
Confidence             67777777763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.57  E-value=8.9e-07  Score=89.98  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=80.8

Q ss_pred             CCCceeEEEec-CCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877           29 RGTNFQCFAST-GDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        29 ~~~~Ft~vats-~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      .+....|++++ ++|. ||+||.||.|++||.+..+.....+.++..+|.+|.++ |+.+|++++ +++|+|||..... 
T Consensus       616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~-  693 (793)
T PLN00181        616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI-  693 (793)
T ss_pred             cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc-
Confidence            34467788885 4676 99999999999999976543223467899999999997 788888776 5789999974210 


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                           .+.         ....+.      .+.|+...-....|+  .   .+..++++|.+..+.+|+..
T Consensus       694 -----~~~---------~~~~l~------~~~gh~~~i~~v~~s--~---~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        694 -----SGI---------NETPLH------SFMGHTNVKNFVGLS--V---SDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             -----ccc---------CCcceE------EEcCCCCCeeEEEEc--C---CCCEEEEEeCCCEEEEEECC
Confidence                 000         111122      234443211223454  2   24688889999999999964

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.56  E-value=8.2e-07  Score=81.51  Aligned_cols=114  Identities=14%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~  107 (244)
                      ..++++|.+..+|. +++||+||.+|+||.+...+.+ .+ .+..||..|.+.|+-.-|++... ..|++||..-    +
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR-~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~----~  156 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR-NY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE----N  156 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccch-hc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccC----C
Confidence            36799999999999 9999999999999998865455 33 47799999999999998887776 5599999741    1


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                          -|.            -+|-||+...      .++..-.|   +  +..++.+-.-...++|++-.
T Consensus       157 ----~c~------------~~liPe~~~~------i~sl~v~~---d--gsml~a~nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  157 ----SCT------------HELIPEDDTS------IQSLTVMP---D--GSMLAAANNKGNCYVWRLLN  198 (311)
T ss_pred             ----ccc------------cccCCCCCcc------eeeEEEcC---C--CcEEEEecCCccEEEEEccC
Confidence                122            2455766522      23444443   1  46666666666678898754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.55  E-value=6.8e-07  Score=88.21  Aligned_cols=136  Identities=19%  Similarity=0.285  Sum_probs=104.2

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccc-cccceecCCCCCCCeeEEEeCCCCCEEEEeCC---cc--eEEEEeeecc
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNS-MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD---TY--LILICTLFTD  104 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~-~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~---~~--L~L~dt~~~~  104 (244)
                      +.|-+-++|.|. ||+|...|.||+||... ....|+.++-+..||..|+.++||+.|+|--+   .+  ..+||+--. 
T Consensus        61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S-  139 (603)
T KOG0318|consen   61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS-  139 (603)
T ss_pred             eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc-
Confidence            367777899997 99999999999999965 44678899999999999999999999998864   33  789997422 


Q ss_pred             CCCCcccccccccC--CCCCc-ceeeeeCccch---hhcCCccceeee-----------eeeeecCCCCcceEEEEeeCC
Q 044877          105 KNGTTKTGFNGRMG--NKIAA-PRLLKLTPLDS---HLAGVNNKFHKA-----------QFSWVTENGKQERHLVATVGK  167 (244)
Q Consensus       105 ~~~~~~~GF~~~~~--~~kp~-pr~L~L~Pe~~---~~~G~~~~Ft~a-----------kFn~~tg~~~~E~~IvtStG~  167 (244)
                        .-.-.|-.+++-  +-||. |.|+.---||-   .|-|.|.+|...           ||+     ..+|+.|.++.+.
T Consensus       140 --vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys-----PDG~~Fat~gsDg  212 (603)
T KOG0318|consen  140 --VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS-----PDGSRFATAGSDG  212 (603)
T ss_pred             --cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC-----CCCCeEEEecCCc
Confidence              122456677774  44555 88887666773   456777766543           555     2379999999999


Q ss_pred             eEEEEech
Q 044877          168 FSVIWNFQ  175 (244)
Q Consensus       168 fvvvWn~~  175 (244)
                      -++++|=+
T Consensus       213 ki~iyDGk  220 (603)
T KOG0318|consen  213 KIYIYDGK  220 (603)
T ss_pred             cEEEEcCC
Confidence            99999854

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.54  E-value=9.4e-07  Score=81.13  Aligned_cols=133  Identities=15%  Similarity=0.209  Sum_probs=97.2

Q ss_pred             ccccCCCCceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           24 GHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        24 ~k~Y~~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      -+.|..+-++++|..+| .+++++|..+|.||+||+....+...++|....+|.++.+-|||+.|+|.. +.....|+..
T Consensus       118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence            35688889999999999 556999999999999999876677778999999999999999999999765 5779999975


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCC
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGS  181 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~  181 (244)
                      -.    ...+                .|.|.|-..+ +.---.+-.|+  +   .......+|.++-+.+||.+..+++.
T Consensus       198 ~~----~~~s----------------~l~P~~k~~a-h~~~il~C~lS--P---d~k~lat~ssdktv~iwn~~~~~kle  251 (311)
T KOG0315|consen  198 NH----QTAS----------------ELEPVHKFQA-HNGHILRCLLS--P---DVKYLATCSSDKTVKIWNTDDFFKLE  251 (311)
T ss_pred             CC----Cccc----------------cceEhhheec-ccceEEEEEEC--C---CCcEEEeecCCceEEEEecCCceeeE
Confidence            31    1111                1222222111 11111244565  3   25677788899999999999886555


Q ss_pred             c
Q 044877          182 H  182 (244)
Q Consensus       182 ~  182 (244)
                      +
T Consensus       252 ~  252 (311)
T KOG0315|consen  252 L  252 (311)
T ss_pred             E
Confidence            4

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=98.53  E-value=5.7e-07  Score=91.19  Aligned_cols=73  Identities=18%  Similarity=0.187  Sum_probs=64.9

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      +-+++|++++|+|. +|+|+.||.|.+||..+++..+ .|-+|-+.|.+|.||.||.-|++.. +++++|||....
T Consensus       577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~-~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK-QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh-hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            45699999999998 9999999999999999888777 5678899999999999999998776 588999997643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=2.3e-07  Score=87.30  Aligned_cols=69  Identities=25%  Similarity=0.373  Sum_probs=62.8

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      =.|..+++.|+ +|+|..||.|-+||..+.+-|+ .|-+|=.||++|+.|+||+.||+++ +..+.|||..-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar-~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR-MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh-hhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence            46999999998 9999999999999999998888 5788999999999999999999877 58899999863

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=98.49  E-value=1.6e-06  Score=82.49  Aligned_cols=132  Identities=14%  Similarity=0.177  Sum_probs=95.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~  107 (244)
                      +...-|++.+|+-. +|+|+.|..--|||..++..+- .++||+|.|+.++||.||.+|+..-+ .-|++|+..      
T Consensus        64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~-eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s------  136 (399)
T KOG0296|consen   64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG-ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS------  136 (399)
T ss_pred             CCceEEEEeCCCCceEEecCCCceEEEEEccCCccee-EecCCCCceEEEEEccCceEEEecCCCccEEEEEcc------
Confidence            34477999999655 8999999999999999888776 58999999999999999999855545 459999874      


Q ss_pred             Ccccccccc-c----CC-----CCCcceeeee-----------Cccc--h-hhcCCccceeeeeeeeecCCCCcceEEEE
Q 044877          108 TTKTGFNGR-M----GN-----KIAAPRLLKL-----------TPLD--S-HLAGVNNKFHKAQFSWVTENGKQERHLVA  163 (244)
Q Consensus       108 ~~~~GF~~~-~----~~-----~kp~pr~L~L-----------~Pe~--~-~~~G~~~~Ft~akFn~~tg~~~~E~~Ivt  163 (244)
                         .|+++. +    .+     =-|.-+.|--           -|+.  . .+.|+..+-|.++|.  + +  +++...+
T Consensus       137 ---tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~--p-d--GKr~~tg  208 (399)
T KOG0296|consen  137 ---TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI--P-D--GKRILTG  208 (399)
T ss_pred             ---cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc--C-C--CceEEEE
Confidence               234432 1    10     0122222210           1110  0 456888888888997  2 2  7999999


Q ss_pred             eeCCeEEEEechh
Q 044877          164 TVGKFSVIWNFQQ  176 (244)
Q Consensus       164 StG~fvvvWn~~k  176 (244)
                      ..+.-+++||.+.
T Consensus       209 y~dgti~~Wn~kt  221 (399)
T KOG0296|consen  209 YDDGTIIVWNPKT  221 (399)
T ss_pred             ecCceEEEEecCC
Confidence            9999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=98.49  E-value=1.4e-06  Score=85.14  Aligned_cols=140  Identities=16%  Similarity=0.248  Sum_probs=95.9

Q ss_pred             cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      +.-.++.++||++.+.+|. ||+|+.||.+|+|+..+. .+. .|--|..||.+|-.+.+|.|||+.. ++++.|||..-
T Consensus       230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~-tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  230 KSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LIS-TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             ccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhh-hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence            4456678899999999999 999999999999999654 566 4677999999999999999999887 68999999832


Q ss_pred             ccCCCCcccccc--cc------------cCC--CCCcceeeeeC---ccchhhcCCccceeeeeeeeecCCCCcceEEEE
Q 044877          103 TDKNGTTKTGFN--GR------------MGN--KIAAPRLLKLT---PLDSHLAGVNNKFHKAQFSWVTENGKQERHLVA  163 (244)
Q Consensus       103 ~~~~~~~~~GF~--~~------------~~~--~kp~pr~L~L~---Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~Ivt  163 (244)
                      ..    -+.=|+  ..            |.-  -+..=+..+|-   |. -++.||...-.--+||.     .+.-...+
T Consensus       308 g~----~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~-~t~~GH~g~V~alk~n~-----tg~LLaS~  377 (524)
T KOG0273|consen  308 GT----VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV-KTFIGHHGEVNALKWNP-----TGSLLASC  377 (524)
T ss_pred             ce----EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcc-eeeecccCceEEEEECC-----CCceEEEe
Confidence            11    011111  10            000  00001112211   10 14566554444448883     35788999


Q ss_pred             eeCCeEEEEechh
Q 044877          164 TVGKFSVIWNFQQ  176 (244)
Q Consensus       164 StG~fvvvWn~~k  176 (244)
                      |.+.-+-+|+..+
T Consensus       378 SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  378 SDDGTLKIWSMGQ  390 (524)
T ss_pred             cCCCeeEeeecCC
Confidence            9999999999654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.48  E-value=1.4e-06  Score=89.39  Aligned_cols=123  Identities=15%  Similarity=0.254  Sum_probs=86.1

Q ss_pred             cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEecccc-----------------------------------------c
Q 044877           25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSM-----------------------------------------R   62 (244)
Q Consensus        25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~-----------------------------------------r   62 (244)
                      +.++-+.+.+.+|++.-++ +++++.+|.+..||..+.                                         +
T Consensus       488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k  567 (910)
T KOG1539|consen  488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK  567 (910)
T ss_pred             cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence            4568888899999998776 889999999888887421                                         2


Q ss_pred             cceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCcc
Q 044877           63 QAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNN  141 (244)
Q Consensus        63 ~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~  141 (244)
                      .++ .|-|||+.|+.++||||||||+++|+ .+|++||.-                     ...++-     ....  +.
T Consensus       568 vvR-~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp---------------------t~~lID-----~~~v--d~  618 (910)
T KOG1539|consen  568 VVR-EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP---------------------TGTLID-----GLLV--DS  618 (910)
T ss_pred             hhH-HhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc---------------------Ccceee-----eEec--CC
Confidence            445 46899999999999999999999996 889999962                     211221     0011  11


Q ss_pred             ceeeeeeeeecCCCCcceEEEEeeC-CeEEEEechhhhcCC
Q 044877          142 KFHKAQFSWVTENGKQERHLVATVG-KFSVIWNFQQVKNGS  181 (244)
Q Consensus       142 ~Ft~akFn~~tg~~~~E~~IvtStG-~fvvvWn~~kV~~g~  181 (244)
                      --+.-.|+.     .+.-..++..| .=++.|.=+..-++.
T Consensus       619 ~~~sls~SP-----ngD~LAT~Hvd~~gIylWsNkslF~~v  654 (910)
T KOG1539|consen  619 PCTSLSFSP-----NGDFLATVHVDQNGIYLWSNKSLFKSV  654 (910)
T ss_pred             cceeeEECC-----CCCEEEEEEecCceEEEEEchhHheec
Confidence            112235652     24677777777 889999766655443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2.9e-06  Score=79.10  Aligned_cols=109  Identities=22%  Similarity=0.281  Sum_probs=63.1

Q ss_pred             EEEecCCCc-EEEeCCCCcEEEEeccccccc--eecCC--CCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877           35 CFASTGDGS-IVVGSLDGKIRLYSSNSMRQA--KTAFP--GLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT  108 (244)
Q Consensus        35 ~vats~~G~-IavGS~dG~IRLyD~~~~r~a--Kt~lp--glGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~  108 (244)
                      ++|.+|+|- .|+|+..+.|+|||.+.....  .|+..  +.-...+.|-+|||||+||.++. +.+.|+|+--    |.
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~----G~  220 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD----GT  220 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC----Cc
Confidence            444555554 344444445555555432111  11111  23457899999999999997775 6699999732    22


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccce---eeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKF---HKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~F---t~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      -+..|+                       +++..+   -.|.|.  +   ..+-++++|.+..+.+||++
T Consensus       221 ~~~tfs-----------------------~~~~~~~~~~~a~ft--P---ds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  221 VKSTFS-----------------------GYPNAGNLPLSATFT--P---DSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             EeeeEe-----------------------eccCCCCcceeEEEC--C---CCcEEEEecCCCcEEEEEcC
Confidence            222222                       221111   134564  2   26888899999999999993

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.43  E-value=4.8e-07  Score=85.24  Aligned_cols=118  Identities=23%  Similarity=0.293  Sum_probs=88.2

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCC-CCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCc
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGL-GSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTT  109 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~  109 (244)
                      +++|.-++.|. -++||.||.|||||....||..|.-..| |..|.+.-||.||+|||+.-+ +.+.||+..        
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~--------  335 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS--------  335 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec--------
Confidence            78999999999 5899999999999999999888766666 479999999999999998875 669999963        


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCC----ccc-eeeeeeeeecCCCCcceEEEEe-eCCeEEEEechhhhcCCc
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGV----NNK-FHKAQFSWVTENGKQERHLVAT-VGKFSVIWNFQQVKNGSH  182 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~----~~~-Ft~akFn~~tg~~~~E~~IvtS-tG~fvvvWn~~kV~~g~~  182 (244)
                                   ..|.|+      .|+|.    ... =|.|-||..     .+.++.-- .-.-++.||-+.--+-.+
T Consensus       336 -------------t~R~l~------~YtGAg~tgrq~~rtqAvFNht-----EdyVl~pDEas~slcsWdaRtadr~~l  390 (430)
T KOG0640|consen  336 -------------TGRMLK------EYTGAGTTGRQKHRTQAVFNHT-----EDYVLFPDEASNSLCSWDARTADRVAL  390 (430)
T ss_pred             -------------CCceEE------EEecCCcccchhhhhhhhhcCc-----cceEEccccccCceeeccccchhhhhh
Confidence                         346777      67664    122 345688842     34444321 224578999887655444

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.43  E-value=2e-06  Score=79.28  Aligned_cols=127  Identities=17%  Similarity=0.242  Sum_probs=87.6

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCcccc
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTG  112 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~G  112 (244)
                      =+.+=++++-+|.+.+.|+.|||||.+++...++ |. +..||+++-+|+||++|..+--..+.+||..-        .|
T Consensus       147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s-L~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks--------f~  216 (334)
T KOG0278|consen  147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS-LE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS--------FG  216 (334)
T ss_pred             eeEEEeccCceEEeeccCCceEEEEeccCcEEEE-Ee-cCCCCcceeeccCCCEEEEecCceeEEecccc--------cc
Confidence            4566678887899999999999999999988875 44 89999999999999998666668899999742        22


Q ss_pred             cccccCCCCCcc-eeeeeCccchhh---------------cCCcc-ce--------eeeeeeeecCCCCcceEEEEeeCC
Q 044877          113 FNGRMGNKIAAP-RLLKLTPLDSHL---------------AGVNN-KF--------HKAQFSWVTENGKQERHLVATVGK  167 (244)
Q Consensus       113 F~~~~~~~kp~p-r~L~L~Pe~~~~---------------~G~~~-~F--------t~akFn~~tg~~~~E~~IvtStG~  167 (244)
                      -.++.  +.|.. ---.|+|++-.+               +|..+ .|        ..-+|+  +   .+|-..++|.+.
T Consensus       217 ~lKs~--k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS--P---dGE~yAsGSEDG  289 (334)
T KOG0278|consen  217 LLKSY--KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS--P---DGELYASGSEDG  289 (334)
T ss_pred             ceeec--cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC--C---CCceeeccCCCc
Confidence            22221  11111 112466766322               22221 11        122665  2   269999999999


Q ss_pred             eEEEEechh
Q 044877          168 FSVIWNFQQ  176 (244)
Q Consensus       168 fvvvWn~~k  176 (244)
                      -+.+|-.--
T Consensus       290 TirlWQt~~  298 (334)
T KOG0278|consen  290 TIRLWQTTP  298 (334)
T ss_pred             eEEEEEecC
Confidence            999997644

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=98.42  E-value=8.3e-07  Score=87.64  Aligned_cols=150  Identities=20%  Similarity=0.297  Sum_probs=101.5

Q ss_pred             CCceecccccccCCCC--------ceeEEEecCC--CcEEEeCCCCcEEEEeccccc----cceecCC-CCCCCeeEEEe
Q 044877           16 APVLNWSQGHQFSRGT--------NFQCFASTGD--GSIVVGSLDGKIRLYSSNSMR----QAKTAFP-GLGSPIRYVDV   80 (244)
Q Consensus        16 ~~~~~~~~~k~Y~~~~--------~Ft~vats~~--G~IavGS~dG~IRLyD~~~~r----~aKt~lp-glGdPI~~vdv   80 (244)
                      ..++..+-+-||-++.        ..+|+..+|.  +.+.++|.||.+|+||....+    .-|+... |..-|+++-.+
T Consensus       246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~  325 (641)
T KOG0772|consen  246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW  325 (641)
T ss_pred             ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence            3345556677885443        3788999994  449999999999999996433    1233322 34469999999


Q ss_pred             CCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcce
Q 044877           81 TYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQER  159 (244)
Q Consensus        81 S~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~  159 (244)
                      ++||+||+|.|. ..|.+||..-   .      |.+      |. .++    -++|.-|..+  |+-.|+.   +  +..
T Consensus       326 nrdg~~iAagc~DGSIQ~W~~~~---~------~v~------p~-~~v----k~AH~~g~~I--tsi~FS~---d--g~~  378 (641)
T KOG0772|consen  326 NRDGKLIAAGCLDGSIQIWDKGS---R------TVR------PV-MKV----KDAHLPGQDI--TSISFSY---D--GNY  378 (641)
T ss_pred             CCCcchhhhcccCCceeeeecCC---c------ccc------cc-eEe----eeccCCCCce--eEEEecc---c--cch
Confidence            999999999996 7799999620   0      221      11 112    2345555444  6778883   2  578


Q ss_pred             EEEEeeCCeEEEEechhhhcCCccccccccCCceeee
Q 044877          160 HLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYC  196 (244)
Q Consensus       160 ~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~  196 (244)
                      +..-+.+.-+-+|||++-++--.    ...||.+-|+
T Consensus       379 LlSRg~D~tLKvWDLrq~kkpL~----~~tgL~t~~~  411 (641)
T KOG0772|consen  379 LLSRGFDDTLKVWDLRQFKKPLN----VRTGLPTPFP  411 (641)
T ss_pred             hhhccCCCceeeeeccccccchh----hhcCCCccCC
Confidence            89999999999999988765433    2345555444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=3.2e-06  Score=78.94  Aligned_cols=117  Identities=20%  Similarity=0.318  Sum_probs=88.6

Q ss_pred             ccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877           26 QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      .|..+.+..+.++.++-+|++|+.||.||+||..++.  -..+-.|..||.+|..++--..+++++ +.+|.+||.+.+-
T Consensus        50 ~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~--~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~  127 (323)
T KOG1036|consen   50 KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN--EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV  127 (323)
T ss_pred             heecCCceeeeeccCCceEEEeccCceEEEEEecCCc--ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence            4788899999999998789999999999999997653  224567899999999998888888998 5889999986311


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~  179 (244)
                      ..    .+|.                      .++     +-...    +-.+++.||+..++.|.+||++....
T Consensus       128 ~~----~~~d----------------------~~k-----kVy~~----~v~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  128 VV----GTFD----------------------QGK-----KVYCM----DVSGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             cc----cccc----------------------cCc-----eEEEE----eccCCEEEEeecCceEEEEEcccccc
Confidence            00    0111                      111     22222    12369999999999999999987653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.40  E-value=2.6e-06  Score=83.09  Aligned_cols=109  Identities=18%  Similarity=0.274  Sum_probs=81.0

Q ss_pred             eeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCcc
Q 044877           33 FQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTK  110 (244)
Q Consensus        33 Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~  110 (244)
                      ..|.+++| +++ +++||.||.|||||.+... .+-.--.||.||.+|.+-|.|..|+++.=+.+++||..-.       
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G-------  227 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG-------  227 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC-------
Confidence            57899998 666 8999999999999997652 2222235999999999999999986666789999997521       


Q ss_pred             cccccccCCCCCcceeeeeCccchhhcC-CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          111 TGFNGRMGNKIAAPRLLKLTPLDSHLAG-VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                                   .+.|.       .+. |.=.-|+-++.  . +  +.+.+++|-+..|-++|.
T Consensus       228 -------------~qll~-------~~~~H~KtVTcL~l~--s-~--~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  228 -------------GQLLT-------SMFNHNKTVTCLRLA--S-D--STRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             -------------ceehh-------hhhcccceEEEEEee--c-C--CceEeecccccceEEEEc
Confidence                         11222       222 33345777887  2 2  589999999999999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.40  E-value=3.7e-06  Score=81.47  Aligned_cols=123  Identities=18%  Similarity=0.287  Sum_probs=95.7

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCCCCCEEEEe-CCcceEEEEeeec
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYDGRWILGT-TDTYLILICTLFT  103 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~~L~L~dt~~~  103 (244)
                      ...+.+.-+.+|++|. +|+||.|-..-+|+..-..  ..+-+|.||..||..|.+|||.+||||. ++..|.|||+.-+
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            3455677889999997 9999999999888874322  2344578999999999999999999854 4677999998532


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCC
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGS  181 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~  181 (244)
                      |                      +.      +.+++.+.|+..-+-|.+ +  +-+.|++|.++-++-||+.-=+.+.
T Consensus       302 d----------------------~~------~~y~~~~~~S~~sc~W~p-D--g~~~V~Gs~dr~i~~wdlDgn~~~~  348 (519)
T KOG0293|consen  302 D----------------------LR------HLYPSGLGFSVSSCAWCP-D--GFRFVTGSPDRTIIMWDLDGNILGN  348 (519)
T ss_pred             h----------------------hh------hhcccCcCCCcceeEEcc-C--CceeEecCCCCcEEEecCCcchhhc
Confidence            2                      11      455555788889999986 3  5779999999999999997655443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=98.38  E-value=1.5e-06  Score=83.69  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=96.1

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccC
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDK  105 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~  105 (244)
                      +....+.++|++|+.. .+++|.||.||+||....+... .|-|+|.-|+++|..|---.|++.++ +.+.|||++-   
T Consensus       178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS---  253 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS---  253 (464)
T ss_pred             hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCCccceeEEccCCceeEeecCCC---
Confidence            3446689999999665 9999999999999997665555 56899999999999999999988886 7799999852   


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                        ..+|.      ++.+|.+.-...+|+-     .+.-...+|-+..+-++|.+.
T Consensus       254 ------------------g~cl~------tlh~HKntVl~~~f~~-----n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  254 ------------------GSCLA------TLHGHKNTVLAVKFNP-----NGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             ------------------cchhh------hhhhccceEEEEEEcC-----CCCeeEEccCCceEEEEehhH
Confidence                              34555      7888888888999992     247888899999999999883

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.35  E-value=4.1e-06  Score=78.22  Aligned_cols=68  Identities=21%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEE-eCCcceEEEEee
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILG-TTDTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLa-T~~~~L~L~dt~  101 (244)
                      .+|..+..+++|++||-|.++-|||..++++. +.+-||...|.+|+++| |+++.++ .|+.+-+|||.+
T Consensus       148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R  217 (343)
T KOG0286|consen  148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR  217 (343)
T ss_pred             eEEEEEcCCCceEecCCCceEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence            57888888999999999999999999988644 46789999999999999 9999985 479999999985

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.35  E-value=3.4e-06  Score=81.72  Aligned_cols=124  Identities=21%  Similarity=0.275  Sum_probs=93.0

Q ss_pred             ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeec
Q 044877           26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFT  103 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~  103 (244)
                      +|.+.....++|.|+||. +++-..|-.||+|+....-.-+  +-...+||+++++|.||+++|.+-. ..|.|||..  
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~--lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~--  425 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG--LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE--  425 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc--cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc--
Confidence            466777799999999998 7777799999999985432221  3457899999999999999999975 779999963  


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCcc-ceeee-eeeeecCCCCcceEEEEeeCCeEEEEechh-----
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNN-KFHKA-QFSWVTENGKQERHLVATVGKFSVIWNFQQ-----  176 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~-~Ft~a-kFn~~tg~~~~E~~IvtStG~fvvvWn~~k-----  176 (244)
                                         -+++.+      .|+|+.. +|.=. .|-    .+...-+.++|.+.-|++|+-+.     
T Consensus       426 -------------------e~~lv~------kY~Ghkq~~fiIrSCFg----g~~~~fiaSGSED~kvyIWhr~sgkll~  476 (519)
T KOG0293|consen  426 -------------------ENKLVR------KYFGHKQGHFIIRSCFG----GGNDKFIASGSEDSKVYIWHRISGKLLA  476 (519)
T ss_pred             -------------------hhhHHH------HhhcccccceEEEeccC----CCCcceEEecCCCceEEEEEccCCceeE
Confidence                               234555      7889875 44433 553    33356777899999999999764     


Q ss_pred             hhcCCc
Q 044877          177 VKNGSH  182 (244)
Q Consensus       177 V~~g~~  182 (244)
                      ++.|..
T Consensus       477 ~LsGHs  482 (519)
T KOG0293|consen  477 VLSGHS  482 (519)
T ss_pred             eecCCc
Confidence            555554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.34  E-value=2.3e-06  Score=83.56  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=97.7

Q ss_pred             ccCCCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877           26 QFSRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      .+.++-.-+||-++|+++  +.+|..||.||.||.++++... ....+-.+|..|.|-++|+..+++++ +++++|+-.+
T Consensus       295 ~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq-eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~  373 (503)
T KOG0282|consen  295 RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ-EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI  373 (503)
T ss_pred             EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH-HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC
Confidence            356667789999999984  8999999999999998877555 35667779999999999999999996 7799999765


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccch--------------------------hhcCCcc-ceee-eeeeeecCC
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDS--------------------------HLAGVNN-KFHK-AQFSWVTEN  154 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~--------------------------~~~G~~~-~Ft~-akFn~~tg~  154 (244)
                      .-. -    -|...  ...=.-.++.++|.+=                          .+.|+.. .+.. -.|+  +  
T Consensus       374 ~v~-i----k~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS--p--  442 (503)
T KOG0282|consen  374 PVP-I----KNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS--P--  442 (503)
T ss_pred             Ccc-c----hhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc--C--
Confidence            210 0    00000  0001123445555431                          1223322 1111 1455  2  


Q ss_pred             CCcceEEEEeeCCeEEEEechhhhcC
Q 044877          155 GKQERHLVATVGKFSVIWNFQQVKNG  180 (244)
Q Consensus       155 ~~~E~~IvtStG~fvvvWn~~kV~~g  180 (244)
                       .++.++.++++.-+..||.+..+.=
T Consensus       443 -DG~~l~SGdsdG~v~~wdwkt~kl~  467 (503)
T KOG0282|consen  443 -DGRTLCSGDSDGKVNFWDWKTTKLV  467 (503)
T ss_pred             -CCCeEEeecCCccEEEeechhhhhh
Confidence             3799999999999999999988743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.33  E-value=7.6e-06  Score=83.66  Aligned_cols=127  Identities=15%  Similarity=0.287  Sum_probs=87.6

Q ss_pred             ecccccccCC--CCceeEEEecCCCcE-EEeCCCC-cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-Ccc
Q 044877           20 NWSQGHQFSR--GTNFQCFASTGDGSI-VVGSLDG-KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTY   94 (244)
Q Consensus        20 ~~~~~k~Y~~--~~~Ft~vats~~G~I-avGS~dG-~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~   94 (244)
                      +|--++.|.+  ..+|+|+|.+|.|.| .+|+.|- +|.+|+..+++ ....|-||-.||.+++++|+|..|++.+ +++
T Consensus       423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKT  501 (893)
T ss_pred             ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccce
Confidence            3444555543  456999999999994 5555554 69999999986 5567899999999999999999888777 588


Q ss_pred             eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877           95 LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus        95 L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                      +|+||..            .++     ..-.-|++.          .--+.-.|.  + +  ++++.|++-+.-+-.||.
T Consensus       502 VRiW~if------------~s~-----~~vEtl~i~----------sdvl~vsfr--P-d--G~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  502 VRIWDIF------------SSS-----GTVETLEIR----------SDVLAVSFR--P-D--GKELAVATLDGQITFFDI  549 (893)
T ss_pred             EEEEEee------------ccC-----ceeeeEeec----------cceeEEEEc--C-C--CCeEEEEEecceEEEEEh
Confidence            9999974            210     111122211          111223454  2 2  567777777778889998


Q ss_pred             hhhhc
Q 044877          175 QQVKN  179 (244)
Q Consensus       175 ~kV~~  179 (244)
                      +.-.+
T Consensus       550 ~~~~q  554 (893)
T KOG0291|consen  550 KEAVQ  554 (893)
T ss_pred             hhcee
Confidence            86553

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=1.9e-06  Score=82.68  Aligned_cols=67  Identities=21%  Similarity=0.305  Sum_probs=58.6

Q ss_pred             eEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           34 QCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        34 t~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      -+||++.+|. +|+|..||.+|+|+-..+.... .++.++..|..++|||||++|++.+.+..++|++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-EEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVN  215 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh-hhHhhcCccccceeCCCCcEEEEecCCceEEEEec
Confidence            6999999987 9999999999999966554444 35779999999999999999998887799999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.30  E-value=4.9e-06  Score=84.24  Aligned_cols=129  Identities=19%  Similarity=0.304  Sum_probs=92.9

Q ss_pred             eecc-cccccCCCCceeEEEecCCCc-EEEeCCC-----CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           19 LNWS-QGHQFSRGTNFQCFASTGDGS-IVVGSLD-----GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        19 ~~~~-~~k~Y~~~~~Ft~vats~~G~-IavGS~d-----G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      +.|- +.|-|.-++...|++.+++|. ||++..-     -.||||...+-.+.+ .|++|.-.||.|.+||||+|||+.|
T Consensus       513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLTVT~l~FSpdg~~LLsvs  591 (764)
T KOG1063|consen  513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLTVTRLAFSPDGRYLLSVS  591 (764)
T ss_pred             ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eecccceEEEEEEECCCCcEEEEee
Confidence            3454 467899999999999999999 5655543     459999997765444 6899999999999999999999999


Q ss_pred             C-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcce-EEEEeeCCeE
Q 044877           92 D-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQER-HLVATVGKFS  169 (244)
Q Consensus        92 ~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~-~IvtStG~fv  169 (244)
                      + .+.-||..+- +.+      ++-+|..-|+-.|++=                  -++|.+    .|. ...+|-+++|
T Consensus       592 RDRt~sl~~~~~-~~~------~e~~fa~~k~HtRIIW------------------dcsW~p----de~~FaTaSRDK~V  642 (764)
T KOG1063|consen  592 RDRTVSLYEVQE-DIK------DEFRFACLKAHTRIIW------------------DCSWSP----DEKYFATASRDKKV  642 (764)
T ss_pred             cCceEEeeeeec-ccc------hhhhhccccccceEEE------------------EcccCc----ccceeEEecCCceE
Confidence            6 6688998632 111      2222433333333222                  356643    244 8889999999


Q ss_pred             EEEechhh
Q 044877          170 VIWNFQQV  177 (244)
Q Consensus       170 vvWn~~kV  177 (244)
                      ++|...+-
T Consensus       643 kVW~~~~~  650 (764)
T KOG1063|consen  643 KVWEEPDL  650 (764)
T ss_pred             EEEeccCc
Confidence            99987654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=98.30  E-value=1.2e-06  Score=86.50  Aligned_cols=73  Identities=26%  Similarity=0.442  Sum_probs=58.5

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc------cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEE
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR------QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILIC   99 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r------~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~d   99 (244)
                      ..+.+.++.+.+++|. ||+|..||.|.+||..+.-      .-+-+++  |..|++|.||+||++||+-. +++|+|||
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~--g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP--GQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC--CCceeEEEeccccchhhhccCCCceeeee
Confidence            3567889999999998 9999999999999974221      1111222  55899999999999999887 79999999


Q ss_pred             eee
Q 044877          100 TLF  102 (244)
Q Consensus       100 t~~  102 (244)
                      .+.
T Consensus       393 Lrq  395 (641)
T KOG0772|consen  393 LRQ  395 (641)
T ss_pred             ccc
Confidence            865

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.29  E-value=4.9e-06  Score=79.27  Aligned_cols=97  Identities=19%  Similarity=0.248  Sum_probs=74.9

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCCCC
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIA  122 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp  122 (244)
                      +++||-|+.||+||..++++.-| |-||+.=|.+++++|-|+||++..+ ++|++||.+                     
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~t-L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~---------------------  364 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLFT-LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK---------------------  364 (406)
T ss_pred             EEeecccceEEEEeccCCeEEEE-EecccceeeeeEEcCCCeEEEEEecCCcEEEEEec---------------------
Confidence            89999999999999999988875 6889999999999999999998775 889999974                     


Q ss_pred             cceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          123 APRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       123 ~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      .-++++-.|.|.++.      +.--|.     .....+|.+|.+.-+-+|-
T Consensus       365 ~~~cmk~~~ah~hfv------t~lDfh-----~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  365 NLQCMKTLEAHEHFV------TSLDFH-----KTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             cceeeeccCCCccee------EEEecC-----CCCceEEeccccceeeeee
Confidence            235555444433332      233443     1245888889888888884

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=98.26  E-value=9.4e-06  Score=77.67  Aligned_cols=130  Identities=14%  Similarity=0.188  Sum_probs=99.0

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcc
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTK  110 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~  110 (244)
                      +.||++.|..+ +++||.|+.|++||..++ +.|.+|+||-..+.+|.||+---|+.+..+ ..+.-||....    +  
T Consensus       154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n----k--  226 (460)
T KOG0285|consen  154 VRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN----K--  226 (460)
T ss_pred             EEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh----h--
Confidence            78999999655 999999999999999998 589999999999999999999999998875 67999997531    1  


Q ss_pred             cccccccCCCCCcceeeeeCccc-h----------------------hhcCCccceeeeeeeeecCCCCcceEEEEeeCC
Q 044877          111 TGFNGRMGNKIAAPRLLKLTPLD-S----------------------HLAGVNNKFHKAQFSWVTENGKQERHLVATVGK  167 (244)
Q Consensus       111 ~GF~~~~~~~kp~pr~L~L~Pe~-~----------------------~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~  167 (244)
                        |-+..-.---.-++|.|+|-. +                      .+.||......-.|+-     .+..+|.+|.+.
T Consensus       227 --vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-----~dpqvit~S~D~  299 (460)
T KOG0285|consen  227 --VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-----TDPQVITGSHDS  299 (460)
T ss_pred             --hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-----CCCceEEecCCc
Confidence              221110011234677777733 2                      2356666556667762     257899999999


Q ss_pred             eEEEEechh
Q 044877          168 FSVIWNFQQ  176 (244)
Q Consensus       168 fvvvWn~~k  176 (244)
                      -|-.||+..
T Consensus       300 tvrlWDl~a  308 (460)
T KOG0285|consen  300 TVRLWDLRA  308 (460)
T ss_pred             eEEEeeecc
Confidence            999999975

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.26  E-value=5.7e-06  Score=84.55  Aligned_cols=116  Identities=17%  Similarity=0.312  Sum_probs=92.3

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccC
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDK  105 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~  105 (244)
                      +.+.+.||+..+++.. +|+|=.||.||+||..+.. .-..+.||...|+-+.+..+|..|++.++ +-|.+||..-.. 
T Consensus        63 ~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-  140 (888)
T KOG0306|consen   63 KKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-  140 (888)
T ss_pred             cccceEEEeeccCCcceEEEEecCceEEeeccCCCc-eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-
Confidence            3445799999999886 8999999999999997553 33357899999999999999999999996 559999975210 


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                         -+.       .+-||+-.-|.+.|.  +   ...-+|++|.+.++-.||++.
T Consensus       141 -------------------Gl~-------rL~GHkd~iT~~~F~--~---~~~~lvS~sKDs~iK~WdL~t  180 (888)
T KOG0306|consen  141 -------------------GLF-------RLRGHKDSITQALFL--N---GDSFLVSVSKDSMIKFWDLET  180 (888)
T ss_pred             -------------------eeE-------EeecchHHHhHHhcc--C---CCeEEEEeccCceEEEEeccc
Confidence                               112       255877778889997  2   246788899999999999864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=98.23  E-value=1.5e-05  Score=74.59  Aligned_cols=152  Identities=14%  Similarity=0.181  Sum_probs=100.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc--C
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD--K  105 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~--~  105 (244)
                      +-.+-++.++|+|. +|+|+.|-.|-||..-+...-.-.+.||...|.+|..++||..|++.. +++++.||.....  .
T Consensus        47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r  126 (338)
T KOG0265|consen   47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR  126 (338)
T ss_pred             cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence            44577899999997 999999999999997543222224679999999999999999999664 7999999987543  2


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccc-------hhhcCC----ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLD-------SHLAGV----NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~-------~~~~G~----~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                      +-++-.+|..++.-.+-.|-++.=-..|       +.-.+.    +.++.---|.|.   ++.+++|++-.++-+-+||+
T Consensus       127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~---d~s~qv~sggIdn~ikvWd~  203 (338)
T KOG0265|consen  127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFK---DTSDQVISGGIDNDIKVWDL  203 (338)
T ss_pred             hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEec---ccccceeeccccCceeeecc
Confidence            3445567777765211222233211111       110010    112222234442   45799999999999999999


Q ss_pred             hh-----hhcCCccc
Q 044877          175 QQ-----VKNGSHEC  184 (244)
Q Consensus       175 ~k-----V~~g~~~~  184 (244)
                      ++     ++.|..|+
T Consensus       204 r~~d~~~~lsGh~Dt  218 (338)
T KOG0265|consen  204 RKNDGLYTLSGHADT  218 (338)
T ss_pred             ccCcceEEeecccCc
Confidence            54     55666653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.19  E-value=1.1e-05  Score=82.14  Aligned_cols=116  Identities=16%  Similarity=0.322  Sum_probs=96.2

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      +-..++.||+.+|+.. ||+||.|-..++|+....+-+- .|-||.--|-+|.|+|..+.++..+ +.+|+||...-   
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~-vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~---  536 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG-VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST---  536 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccCceEEE-EeeCCccceEEEEeccccceeEeccCCceEEEEEecc---
Confidence            4456689999999877 9999999999999998655444 5789999999999999999774333 68999998642   


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                             |.           +|+      ++-||.-.--+|.|-     ..++..|++..+..+-+||.++
T Consensus       537 -------fS-----------Clk------T~eGH~~aVlra~F~-----~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  537 -------FS-----------CLK------TFEGHTSAVLRASFI-----RNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             -------ce-----------eee------eecCccceeEeeeee-----eCCcEEEeccCCCcEEEEeccc
Confidence                   44           788      899998777788886     2379999999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=98.18  E-value=1.5e-05  Score=76.31  Aligned_cols=135  Identities=17%  Similarity=0.222  Sum_probs=89.2

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeCCcceEEEEeeeccCCCCc
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTTDTYLILICTLFTDKNGTT  109 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~~~~L~L~dt~~~~~~~~~  109 (244)
                      -+-|++++|.-. |++|+.|-.||+||.++.... ..|.||..||.+|.+.| |++-+-+..+.+|+|||...  ++ ..
T Consensus       237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V-~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a--gk-t~  312 (460)
T KOG0285|consen  237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV-HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA--GK-TM  312 (460)
T ss_pred             eeEEEeccccceeEEecCCcceEEEeeecccceE-EEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc--Cc-ee
Confidence            367999999655 999999999999999886444 46899999999998884 67655444578999999753  11 11


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhc-CCccceeee-----ee-----------eeecCCCCcceEEEEeeCCeEEEE
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLA-GVNNKFHKA-----QF-----------SWVTENGKQERHLVATVGKFSVIW  172 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~-G~~~~Ft~a-----kF-----------n~~tg~~~~E~~IvtStG~fvvvW  172 (244)
                      ..+|     ..|..-|.|.|+|.+-.++ +.+.+|..=     .|           |.- ..++....++++...-+..|
T Consensus       313 ~tlt-----~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl-~~nsD~v~~~G~dng~~~fw  386 (460)
T KOG0285|consen  313 ITLT-----HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTL-SVNSDGVLVSGGDNGSIMFW  386 (460)
T ss_pred             Eeee-----cccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeee-eeccCceEEEcCCceEEEEE
Confidence            1222     3456789999999775443 223333221     11           211 12334445556666667788


Q ss_pred             echh
Q 044877          173 NFQQ  176 (244)
Q Consensus       173 n~~k  176 (244)
                      |.+.
T Consensus       387 dwks  390 (460)
T KOG0285|consen  387 DWKS  390 (460)
T ss_pred             ecCc
Confidence            8764

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=98.16  E-value=6.5e-06  Score=79.43  Aligned_cols=116  Identities=19%  Similarity=0.341  Sum_probs=86.8

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~  107 (244)
                      +-.+..|..+|+|. |++||..|+..||...+. +-+|.+..|-+||..+..|+||.|+|+... .+|..|+....+   
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn---  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN---  171 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence            33466788899998 999999999999999877 478888999999999999999999999986 889999964321   


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                                         .++     ...-+.-.-+...|+.     .....+.+|.++-+-+|||..-+
T Consensus       172 -------------------Vk~-----~~ahh~eaIRdlafSp-----nDskF~t~SdDg~ikiWdf~~~k  213 (464)
T KOG0284|consen  172 -------------------VKI-----IQAHHAEAIRDLAFSP-----NDSKFLTCSDDGTIKIWDFRMPK  213 (464)
T ss_pred             -------------------hHH-----hhHhhhhhhheeccCC-----CCceeEEecCCCeEEEEeccCCc
Confidence                               000     1111112233445551     25778889999999999995433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=98.15  E-value=1.2e-05  Score=77.65  Aligned_cols=117  Identities=15%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             eeEEEecC-CC-cEEEeCCCCcEEEEeccc--cccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCC
Q 044877           33 FQCFASTG-DG-SIVVGSLDGKIRLYSSNS--MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKN  106 (244)
Q Consensus        33 Ft~vats~-~G-~IavGS~dG~IRLyD~~~--~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~  106 (244)
                      ..=|+.++ +- -+++.+.||.+-|||.++  .+..+ ..+++..+|.+++|.|=+.|||||+  +++|.|||.+     
T Consensus       230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~-~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR-----  303 (422)
T KOG0264|consen  230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH-SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR-----  303 (422)
T ss_pred             eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc-cccccCCceeEEEeCCCCCceEEeccCCCcEEEeech-----
Confidence            34456666 22 389999999999999984  43334 4678999999999999999999996  6999999964     


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceE-EEEeeCCeEEEEechhhhcCC
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERH-LVATVGKFSVIWNFQQVKNGS  181 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~-IvtStG~fvvvWn~~kV~~g~  181 (244)
                                         -|.. |-| ++.|+.-.-..-.|+  +.   .|++ .++++++.+.+||+.+|-.-+
T Consensus       304 -------------------nL~~-~lh-~~e~H~dev~~V~WS--Ph---~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  304 -------------------NLNK-PLH-TFEGHEDEVFQVEWS--PH---NETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             -------------------hccc-Cce-eccCCCcceEEEEeC--CC---CCceeEecccCCcEEEEecccccccc
Confidence                               1221 111 355554333334444  42   3444 344578999999999997554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=1.7e-05  Score=82.45  Aligned_cols=121  Identities=18%  Similarity=0.213  Sum_probs=104.2

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~  108 (244)
                      -+...|++++.+- .++|+.|=.||+|.-...|+.-| |-||-|-|..+.|.+.==|||++++ .+||+|+-+       
T Consensus        52 GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft-L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-------  123 (1202)
T KOG0292|consen   52 GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT-LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-------  123 (1202)
T ss_pred             CccceeeecCCCCeEEecCCccEEEEEecccceehhh-hccccceeEEeeccCCCceEEEccCCCeEEEEecc-------
Confidence            4678999999987 79999999999999988887774 6789999999999999999999996 889999964       


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccc
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHEC  184 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~  184 (244)
                                    .-.++.      .++||+|-.-.|+|..     ..+.++++|-+.-|=+||..-..+++..+
T Consensus       124 --------------sr~~ia------vltGHnHYVMcAqFhp-----tEDlIVSaSLDQTVRVWDisGLRkk~~~p  174 (1202)
T KOG0292|consen  124 --------------SRKCIA------VLTGHNHYVMCAQFHP-----TEDLIVSASLDQTVRVWDISGLRKKNKAP  174 (1202)
T ss_pred             --------------CCceEE------EEecCceEEEeeccCC-----ccceEEEecccceEEEEeecchhccCCCC
Confidence                          224566      7899999888999982     36788999999999999999888777653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.13  E-value=1e-05  Score=76.08  Aligned_cols=75  Identities=16%  Similarity=0.325  Sum_probs=63.1

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCc-EEEEeccccccceecCCCC-CCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGK-IRLYSSNSMRQAKTAFPGL-GSPIRYVDVTYDGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~-IRLyD~~~~r~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      +-.....||+.+-+|. ||++|.+|+ ||+||..++...+.+-.|. ...|-.|++|||+.||++.++ .+|.++-...
T Consensus       179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            5567799999999999 999999997 9999998776666544453 468999999999999999997 7799987653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.11  E-value=3.9e-06  Score=80.94  Aligned_cols=169  Identities=18%  Similarity=0.280  Sum_probs=122.3

Q ss_pred             EEEecCC-CcEEEeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877           35 CFASTGD-GSIVVGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        35 ~vats~~-G~IavGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~  111 (244)
                      .|.+-++ +.+++|+.|-.|.+|+..+.+. ..-.|-|-+.+|+++++.+|++++||.+ ++.++||+.-          
T Consensus       180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd----------  249 (459)
T KOG0288|consen  180 DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD----------  249 (459)
T ss_pred             eeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc----------
Confidence            4555554 6799999999999999987751 2335788899999999999999999887 5779999962          


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCC
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGL  191 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l  191 (244)
                                 .-|.+.      ++.||.-+.+.++|-..     ..++|.+|.+.-+-.||+.+.--.+       +=|
T Consensus       250 -----------~~r~~~------TLsGHtdkVt~ak~~~~-----~~~vVsgs~DRtiK~WDl~k~~C~k-------t~l  300 (459)
T KOG0288|consen  250 -----------SLRLRH------TLSGHTDKVTAAKFKLS-----HSRVVSGSADRTIKLWDLQKAYCSK-------TVL  300 (459)
T ss_pred             -----------chhhhh------hhcccccceeeehhhcc-----ccceeeccccchhhhhhhhhhheec-------ccc
Confidence                       123333      78899989999999832     2449999999999999999843333       235


Q ss_pred             ceeeeeEEEecCccccccceecCccccCC--CCCCCEEEEcCCceeeeeecccC
Q 044877          192 KSCYCYKIVLKDDSIVDSRFMHDKFAVSD--LPEAPLVIATPMKVSSFSISSRQ  243 (244)
Q Consensus       192 ~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~--~~~~~iiva~~~~v~~~~~~~~~  243 (244)
                      ..-+|..|......++...| ..+-+|=|  +++.-..|++--.|.++.++-.+
T Consensus       301 ~~S~cnDI~~~~~~~~SgH~-DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g  353 (459)
T KOG0288|consen  301 PGSQCNDIVCSISDVISGHF-DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG  353 (459)
T ss_pred             ccccccceEecceeeeeccc-ccceEEEeccCCceeeEeecCcceeeEeeccCC
Confidence            55566667776555554432 33455532  34566678888888888876543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.11  E-value=9.2e-06  Score=80.24  Aligned_cols=70  Identities=23%  Similarity=0.399  Sum_probs=56.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEecc-ccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEE
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSN-SMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILIC   99 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~-~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~d   99 (244)
                      +-+.++|+.+|+|. +|+||.|+.|.||... +++.-+-.=.-.|.||+|+|+|+|++||.+++-+| |+.|.
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            77899999999998 9999999999999874 22222111122469999999999999999999777 99994

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.08  E-value=7.5e-06  Score=84.26  Aligned_cols=68  Identities=19%  Similarity=0.354  Sum_probs=58.0

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCC--CCCCeeEEEeCCCCCEEEEeC-C-cceEEEEe
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPG--LGSPIRYVDVTYDGRWILGTT-D-TYLILICT  100 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpg--lGdPI~~vdvS~DG~~lLaT~-~-~~L~L~dt  100 (244)
                      -.+..+..++||+|. |+++|.|+.||+||..++.    ++++  +.+|+++|.+||+|.||+.+- + +.|-||-.
T Consensus       575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~----lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT----LIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc----eeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            456799999999998 9999999999999998875    4454  568999999999999997554 3 77999975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.07  E-value=3e-05  Score=72.72  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC--EEEEeC-CcceEEEEe
Q 044877           25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR--WILGTT-DTYLILICT  100 (244)
Q Consensus        25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~--~lLaT~-~~~L~L~dt  100 (244)
                      -++.-.-+..|++.+.+|. +++|+.||.+++||+.+.+..+  +-.|..||..+.+-+...  +|+.++ +++|+.||+
T Consensus        67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~--v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~  144 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ--VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT  144 (347)
T ss_pred             hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee--eeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence            3456667889999999998 9999999999999998875333  556889999997775555  555556 699999998


Q ss_pred             eeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      +.                   +.|.--.--||-+.                ..+-..+..+|+..++-++++||+
T Consensus       145 R~-------------------~~pv~t~~LPeRvY----------------a~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  145 RS-------------------SNPVATLQLPERVY----------------AADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             CC-------------------CCeeeeeeccceee----------------ehhccCceeEEEecCCcEEEEEcC
Confidence            63                   23322222233221                112346889999999999999993

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=1.1e-05  Score=83.00  Aligned_cols=68  Identities=26%  Similarity=0.370  Sum_probs=55.3

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccc--------------------------------------------cceec
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--------------------------------------------QAKTA   67 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--------------------------------------------~aKt~   67 (244)
                      ++|+++||+|. +|+|..||.|++|...+..                                            ..|++
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf  287 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF  287 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence            68888888876 8888888888888775410                                            34889


Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           68 FPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        68 lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      ||.||.||+++.+|||+.....-| |+.|.|+..
T Consensus       288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             ccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            999999999999999999887555 677888875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=3.8e-05  Score=70.85  Aligned_cols=130  Identities=17%  Similarity=0.186  Sum_probs=94.6

Q ss_pred             CCCceecccccccCCCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeC
Q 044877           15 GAPVLNWSQGHQFSRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTT   91 (244)
Q Consensus        15 ~~~~~~~~~~k~Y~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~   91 (244)
                      +++-+.-.+.  |-+..-.--|+-+++-.  +++++-||.+||||......--..+..|...|.+||..+ +++-+|..+
T Consensus        47 ~~~gi~e~~s--~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS  124 (311)
T KOG0277|consen   47 DPKGIQECQS--YDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS  124 (311)
T ss_pred             CCCCeEEEEe--eecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec
Confidence            4555554444  77777788899999433  899999999999996322111112446888999999995 444455555


Q ss_pred             -CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEE
Q 044877           92 -DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSV  170 (244)
Q Consensus        92 -~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvv  170 (244)
                       +.+|+||+...                     |.-|+      ++.|+...-..|.|+  +-.  ..-...+|++.++=
T Consensus       125 WD~TiKLW~~~r---------------------~~Sv~------Tf~gh~~~Iy~a~~s--p~~--~nlfas~Sgd~~l~  173 (311)
T KOG0277|consen  125 WDGTIKLWDPNR---------------------PNSVQ------TFNGHNSCIYQAAFS--PHI--PNLFASASGDGTLR  173 (311)
T ss_pred             cCCceEeecCCC---------------------CcceE------eecCCccEEEEEecC--CCC--CCeEEEccCCceEE
Confidence             68899999632                     34555      688888777889999  323  68899999999999


Q ss_pred             EEechhh
Q 044877          171 IWNFQQV  177 (244)
Q Consensus       171 vWn~~kV  177 (244)
                      +||++.-
T Consensus       174 lwdvr~~  180 (311)
T KOG0277|consen  174 LWDVRSP  180 (311)
T ss_pred             EEEecCC
Confidence            9998765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.03  E-value=4.3e-05  Score=72.56  Aligned_cols=106  Identities=15%  Similarity=0.269  Sum_probs=86.0

Q ss_pred             CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccC
Q 044877           41 DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMG  118 (244)
Q Consensus        41 ~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~  118 (244)
                      .|. +++||-|-.--|||..++.-.. .|-|+....+|.+..|.-+.++..+. ++.+|||-+.                
T Consensus       283 gg~Q~vTaSWDRTAnlwDVEtge~v~-~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe----------------  345 (481)
T KOG0300|consen  283 GGQQMVTASWDRTANLWDVETGEVVN-ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE----------------  345 (481)
T ss_pred             CcceeeeeeccccceeeeeccCceec-cccCcchhccccccCCcceEEEEeccCceeEeccchh----------------
Confidence            455 9999999999999998886444 68899999999999999999988884 7799999431                


Q ss_pred             CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877          119 NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       119 ~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~  179 (244)
                       .+|.   ..      -|-||.-..|.+-|+  +    +.+++.+|-+.-|-+|||+....
T Consensus       346 -aI~s---V~------VFQGHtdtVTS~vF~--~----dd~vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  346 -AIQS---VA------VFQGHTDTVTSVVFN--T----DDRVVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             -hcce---ee------eecccccceeEEEEe--c----CCceeecCCCceEEEeeeccccC
Confidence             1111   11      466888889999999  4    47899999999999999987653

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.03  E-value=2.8e-05  Score=73.53  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=86.7

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCC--CCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPG--LGSPIRYVDVTYDGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpg--lGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      |.--.+++++.++|..+ +++||.|+.|+|||-..- -+|-++.-  --.|+.+|.+.|.|.|||+.++ ..|+|||..-
T Consensus       169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T  247 (430)
T KOG0640|consen  169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT  247 (430)
T ss_pred             hhccCcccceeecchhheEEeccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence            66667899999999878 799999999999998532 23333332  3569999999999999999997 8899999742


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                             --.|..             -.|.|.+-    -.-+.-+++-     .+...|.+|-+..+-+||=
T Consensus       248 -------~Qcfvs-------------anPd~qht----~ai~~V~Ys~-----t~~lYvTaSkDG~IklwDG  290 (430)
T KOG0640|consen  248 -------YQCFVS-------------ANPDDQHT----GAITQVRYSS-----TGSLYVTASKDGAIKLWDG  290 (430)
T ss_pred             -------eeEeee-------------cCcccccc----cceeEEEecC-----CccEEEEeccCCcEEeecc
Confidence                   122442             23444432    2334556662     2688999999999999983

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.02  E-value=1.2e-05  Score=76.85  Aligned_cols=117  Identities=17%  Similarity=0.262  Sum_probs=78.5

Q ss_pred             EEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877           35 CFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        35 ~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~  111 (244)
                      .+|+-. .|. |++||.|..|||||...+.+.+ .|.||-+-|..|.|  |.+-|++.. +..|++||-.-         
T Consensus       362 GIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR-vLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~a---------  429 (499)
T KOG0281|consen  362 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLR-VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQA---------  429 (499)
T ss_pred             cceehhccCeEEEecCCCceEEEEeccccHHHH-HHhchHHhhhheee--cCceeeeccccceEEEEeccc---------
Confidence            345544 556 8999999999999998888777 68999999998887  667777665 78899999642         


Q ss_pred             ccccccCCCCC-cceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877          112 GFNGRMGNKIA-APRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG  180 (244)
Q Consensus       112 GF~~~~~~~kp-~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g  180 (244)
                          .+.-+.| ...+|.      ++.-+.-..-.-.|+       .-++|..|-+.-+.+|||-.-...
T Consensus       430 ----aldpra~~~~~Cl~------~lv~hsgRVFrLQFD-------~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  430 ----ALDPRAPASTLCLR------TLVEHSGRVFRLQFD-------EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ----ccCCcccccchHHH------hhhhccceeEEEeec-------ceEEEeccCCCeEEEEEcCCCCcc
Confidence                1111111 123444      333232122235675       356777778899999999765543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.00  E-value=9.2e-05  Score=70.26  Aligned_cols=132  Identities=14%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccc-----cccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS-----MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT  100 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~-----~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt  100 (244)
                      -+.+.||++++.+|. +|+.+.|+.|||||.+.     .|+.+..+| ++. =|-|.|+||-+-++..|.  +.|.++-.
T Consensus        85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dh-pT~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDH-PTRVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCC-ceEEEECCCcceEEEEEccCCEEEEEEe
Confidence            355689999999998 99999999999999963     234444455 554 488999999999998885  66888864


Q ss_pred             eeccCCCCcccccccccCCCCCcceeeeeCccc-hhhcC-CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLD-SHLAG-VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~-~~~~G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                      .- -.+|.+..-|.                |+| .++-- +.+    ---|..+ -+..-.+..+|.|.-+++|+++-=+
T Consensus       163 ~K-~~dG~~~~~~v----------------~~D~~~f~~kh~v----~~i~iGi-A~~~k~imsas~dt~i~lw~lkGq~  220 (420)
T KOG2096|consen  163 VK-KTDGSGSHHFV----------------HIDNLEFERKHQV----DIINIGI-AGNAKYIMSASLDTKICLWDLKGQL  220 (420)
T ss_pred             ee-cccCCCCcccc----------------cccccccchhccc----ceEEEee-cCCceEEEEecCCCcEEEEecCCce
Confidence            32 12232222121                222 11110 110    0112222 1235567788999999999998555


Q ss_pred             cCCccc
Q 044877          179 NGSHEC  184 (244)
Q Consensus       179 ~g~~~~  184 (244)
                      -+..+.
T Consensus       221 L~~idt  226 (420)
T KOG2096|consen  221 LQSIDT  226 (420)
T ss_pred             eeeecc
Confidence            444443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.99  E-value=0.00011  Score=70.35  Aligned_cols=72  Identities=15%  Similarity=0.228  Sum_probs=59.3

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCc-EEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEeCC-cceEEEE
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGK-IRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGTTD-TYLILIC   99 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~-IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT~~-~~L~L~d   99 (244)
                      +-+.+..|+|++++|. ||++|.+|+ ||+|+...+.+.+.+-.|.- -.|-+|+|+||+++|.|++. .++.++-
T Consensus       171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK  246 (391)
T ss_pred             ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence            4567789999999999 999999998 89999987766665544533 47899999999999999987 5677764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=7.8e-05  Score=72.77  Aligned_cols=124  Identities=14%  Similarity=0.225  Sum_probs=93.6

Q ss_pred             CceeEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~  108 (244)
                      -+..|++.+++|+.++|+ ..|.|.||-..+++..+ .+.+|=.+||.|.+|-||.++++.++ .-++.|....-     
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~-v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-----  155 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN-VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-----  155 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHH-HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee-----
Confidence            358999999999955555 99999999999998666 46788899999999999999999986 55999997531     


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                          +. ...+.       ..+|.| .+.+|...-|--+..  .| +...+++.+|.++.+-+||+..
T Consensus       156 ----v~-a~~~~-------~~~p~~-~f~~HtlsITDl~ig--~G-g~~~rl~TaS~D~t~k~wdlS~  207 (476)
T KOG0646|consen  156 ----VS-ADNDH-------SVKPLH-IFSDHTLSITDLQIG--SG-GTNARLYTASEDRTIKLWDLSL  207 (476)
T ss_pred             ----cc-cccCC-------Ccccee-eeccCcceeEEEEec--CC-CccceEEEecCCceEEEEEecc
Confidence                11 01111       233333 366777766666665  22 3578999999999999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.99  E-value=1.3e-05  Score=78.14  Aligned_cols=69  Identities=14%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             ceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceec--C--CCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           32 NFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTA--F--PGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        32 ~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~--l--pglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ++++|+++| .-+ +|++|.|+..|+||.+..+ +|-.  |  -.|.-+|-+..+||+|-.||+|| +++|++||..
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLR-GKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhc-CCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            799999999 444 9999999999999998664 4421  1  23778999999999999999999 5889999984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=8.5e-05  Score=70.48  Aligned_cols=147  Identities=22%  Similarity=0.286  Sum_probs=101.6

Q ss_pred             Cceeccccccc--CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc
Q 044877           17 PVLNWSQGHQF--SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT   93 (244)
Q Consensus        17 ~~~~~~~~k~Y--~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~   93 (244)
                      |..+|+.. .|  +...+.-.+.+...+. |+++|.|.+|-|||+++ +... +++.--..-.+-++||||+||++..-+
T Consensus       173 ~~v~~D~~-~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~-~idtnq~~n~~aavSP~GRFia~~gFT  249 (420)
T KOG2096|consen  173 HFVHIDNL-EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQ-SIDTNQSSNYDAAVSPDGRFIAVSGFT  249 (420)
T ss_pred             cccccccc-ccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceee-eeccccccccceeeCCCCcEEEEecCC
Confidence            45566532 23  3344455566666665 99999999999999974 3333 344444556778999999999766554


Q ss_pred             c-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEE
Q 044877           94 Y-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIW  172 (244)
Q Consensus        94 ~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvW  172 (244)
                      - +.+|+..+. ++|+    |.       ..-|..+       +.||.-..+.+-|+     +..++.|..|-+.-.-+|
T Consensus       250 pDVkVwE~~f~-kdG~----fq-------ev~rvf~-------LkGH~saV~~~aFs-----n~S~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  250 PDVKVWEPIFT-KDGT----FQ-------EVKRVFS-------LKGHQSAVLAAAFS-----NSSTRAVTVSKDGKWRIW  305 (420)
T ss_pred             CCceEEEEEec-cCcc----hh-------hhhhhhe-------eccchhheeeeeeC-----CCcceeEEEecCCcEEEe
Confidence            4 999998764 3332    43       2344444       56777677788998     347999999999999999


Q ss_pred             echhhhcCCccccccccC
Q 044877          173 NFQQVKNGSHECYQNQEG  190 (244)
Q Consensus       173 n~~kV~~g~~~~y~~~~~  190 (244)
                      |..==-....++|-.++|
T Consensus       306 dtdVrY~~~qDpk~Lk~g  323 (420)
T KOG2096|consen  306 DTDVRYEAGQDPKILKEG  323 (420)
T ss_pred             eccceEecCCCchHhhcC
Confidence            987666666676655544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.96  E-value=7.2e-05  Score=75.63  Aligned_cols=132  Identities=20%  Similarity=0.306  Sum_probs=94.1

Q ss_pred             ccCCCceeccccccc-------CCCCc-eeEEEe-cCCCc-EEEeCCCCcEEEEeccccc--------cc-eecCC-CCC
Q 044877           13 NAGAPVLNWSQGHQF-------SRGTN-FQCFAS-TGDGS-IVVGSLDGKIRLYSSNSMR--------QA-KTAFP-GLG   72 (244)
Q Consensus        13 ~~~~~~~~~~~~k~Y-------~~~~~-Ft~vat-s~~G~-IavGS~dG~IRLyD~~~~r--------~a-Kt~lp-glG   72 (244)
                      .+|..|..|.-.++-       .+..+ +.|+|. -++-. +|+|+.|+.|.|||..++-        ++ -..++ |..
T Consensus        92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            356778888877772       22222 689998 44434 9999999999999996441        11 22455 788


Q ss_pred             CCeeEEEeCCCCCEEEEe-CCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeee
Q 044877           73 SPIRYVDVTYDGRWILGT-TDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWV  151 (244)
Q Consensus        73 dPI~~vdvS~DG~~lLaT-~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~  151 (244)
                      ++|-+++..+.|.-|++. |.+-|+|||.+..                    .|+.+       +-||.-|-.--.-+  
T Consensus       172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--------------------~kimk-------LrGHTdNVr~ll~~--  222 (735)
T KOG0308|consen  172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--------------------KKIMK-------LRGHTDNVRVLLVN--  222 (735)
T ss_pred             cceeeeecCCcceEEEecCcccceEEeccccc--------------------cceee-------eeccccceEEEEEc--
Confidence            999999999999777755 5788999997631                    23334       33665444443444  


Q ss_pred             cCCCCcceEEEEeeCCeEEEEechh
Q 044877          152 TENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       152 tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                         +.+.++|.||++.-+=+||+.+
T Consensus       223 ---dDGt~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  223 ---DDGTRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             ---CCCCeEeecCCCceEEeeeccc
Confidence               3479999999999999999853

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.96  E-value=0.00011  Score=69.24  Aligned_cols=79  Identities=15%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             eeEEEecCCC---cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877           33 FQCFASTGDG---SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT  108 (244)
Q Consensus        33 Ft~vats~~G---~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~  108 (244)
                      .+|.-+++.-   ++.+|+.||.|-+||...-...++ |.++...|++|++.|.|+.-|+-. +..|++||..      .
T Consensus        86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s-lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV------~  158 (362)
T KOG0294|consen   86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS-LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV------R  158 (362)
T ss_pred             eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee-ecccccccceeEecCCCceEEEEcCCceeeeehhh------c
Confidence            5677777754   699999999999999977767775 566777799999999999999776 6889999975      3


Q ss_pred             cccccccccC
Q 044877          109 TKTGFNGRMG  118 (244)
Q Consensus       109 ~~~GF~~~~~  118 (244)
                      |+.+|...++
T Consensus       159 Gr~a~v~~L~  168 (362)
T KOG0294|consen  159 GRVAFVLNLK  168 (362)
T ss_pred             CccceeeccC
Confidence            4556776554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.00017  Score=73.05  Aligned_cols=141  Identities=18%  Similarity=0.257  Sum_probs=109.7

Q ss_pred             cccccccCCCCc-eeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC--CEEEEeCC-cc
Q 044877           21 WSQGHQFSRGTN-FQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG--RWILGTTD-TY   94 (244)
Q Consensus        21 ~~~~k~Y~~~~~-Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG--~~lLaT~~-~~   94 (244)
                      |++...|..... ..+||+.|...  .|++|.|++|++|..-..-.-. +|.||---|.+||.-+-|  -||++.++ .+
T Consensus       130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf-Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF-TLEGHEKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce-eeeccccCcceEEeccCCCcceEEecCCCce
Confidence            455555555555 57999999543  9999999999999996554445 578999999999998544  68988886 67


Q ss_pred             eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877           95 LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus        95 L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                      |.+||.+-                     .-+++      ++-||.+|-..+.|.  +   .-.-+|.+|.+.-|-+|+-
T Consensus       209 iKvWDyQt---------------------k~CV~------TLeGHt~Nvs~v~fh--p---~lpiiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  209 IKVWDYQT---------------------KSCVQ------TLEGHTNNVSFVFFH--P---ELPIIISGSEDGTVRIWNS  256 (794)
T ss_pred             EEEeecch---------------------HHHHH------HhhcccccceEEEec--C---CCcEEEEecCCccEEEecC
Confidence            99999753                     23666      899999999999998  3   3578999999999999998


Q ss_pred             hhhhcCCccccccccCCceeeeeE
Q 044877          175 QQVKNGSHECYQNQEGLKSCYCYK  198 (244)
Q Consensus       175 ~kV~~g~~~~y~~~~~l~~~~~Y~  198 (244)
                      ..-+.-+.-.|    ||-..+|-.
T Consensus       257 ~Ty~lE~tLn~----gleRvW~I~  276 (794)
T KOG0276|consen  257 KTYKLEKTLNY----GLERVWCIA  276 (794)
T ss_pred             cceehhhhhhc----CCceEEEEe
Confidence            88777666666    566666644

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.96  E-value=9.1e-05  Score=76.99  Aligned_cols=118  Identities=22%  Similarity=0.332  Sum_probs=81.5

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEecccc-c---------------------------------------cce
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSM-R---------------------------------------QAK   65 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~-r---------------------------------------~aK   65 (244)
                      |+-..-+|.++.+++|. |++++.||+||.|+.... .                                       ...
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            44444577777777777 777777777777776422 0                                       234


Q ss_pred             ecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCcccee
Q 044877           66 TAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFH  144 (244)
Q Consensus        66 t~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft  144 (244)
                      +.|-.+--||.+++|+.||+|+++.++.+ |.|++..  |..                .-+         ++-|+.-.-.
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~--D~s----------------~~~---------~lrgh~apVl  142 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD--DSS----------------QEK---------VLRGHDAPVL  142 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc--ccc----------------hhe---------eecccCCcee
Confidence            45566778999999999999999999755 8888863  111                111         2334443334


Q ss_pred             eeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          145 KAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       145 ~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .-.|+     .++|-+.|.+++.-|.+||++.
T Consensus       143 ~l~~~-----p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen  143 QLSYD-----PKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             eeeEc-----CCCCEEEEEecCceEEEEEccc
Confidence            45666     2479999999999999999984

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=0.00015  Score=67.36  Aligned_cols=114  Identities=20%  Similarity=0.318  Sum_probs=90.9

Q ss_pred             ceeEEEecCC-Cc-EEEeCCCCcEEEEeccccc--cceecC-CCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877           32 NFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMR--QAKTAF-PGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        32 ~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r--~aKt~l-pglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      ..-.+|.+|- |. ||+||.|..||+|+....+  ..||.| .+|.-.|.+|+.||.|++|++++ +.+..||.-.    
T Consensus        16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~----   91 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE----   91 (312)
T ss_pred             cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC----
Confidence            5789999997 88 9999999999999996322  456666 46888999999999999998887 6888898742    


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      .++    |+           ++.      ++-||..-....-|+     ..++.....|-|+-|-+|-..
T Consensus        92 ~~e----fe-----------cv~------~lEGHEnEVK~Vaws-----~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   92 DGE----FE-----------CVA------TLEGHENEVKCVAWS-----ASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             CCc----ee-----------EEe------eeeccccceeEEEEc-----CCCCEEEEeeCCCeEEEEEec
Confidence            111    55           344      677888777777777     236899999999999999877

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=97.95  E-value=0.00012  Score=70.41  Aligned_cols=133  Identities=14%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT  109 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~  109 (244)
                      .++++|..++.+.|+++|-|-.||.||..+++ .++.+- .+-++.+|+.+|.-+.|++.| +.-|+|||-+-++++   
T Consensus       261 ~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~-~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs---  335 (423)
T KOG0313|consen  261 EPVSSVVWSDATVIYSVSWDHTIKVWDLETGG-LKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS---  335 (423)
T ss_pred             cceeeEEEcCCCceEeecccceEEEEEeeccc-ceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCc---
Confidence            35789999998889999999999999998875 333333 678999999999999999888 466999997642211   


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeee-eeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccc
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA-QFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQ  188 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a-kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~  188 (244)
                                      ..+     ..+.||.. |-.+ +.+  +..  .-..+.+|.++-+-+||++.-+.-        
T Consensus       336 ----------------~v~-----~s~~gH~n-wVssvkws--p~~--~~~~~S~S~D~t~klWDvRS~k~p--------  381 (423)
T KOG0313|consen  336 ----------------VVS-----QSLIGHKN-WVSSVKWS--PTN--EFQLVSGSYDNTVKLWDVRSTKAP--------  381 (423)
T ss_pred             ----------------eeE-----Eeeecchh-hhhheecC--CCC--ceEEEEEecCCeEEEEEeccCCCc--------
Confidence                            111     14778765 4433 444  533  567899999999999999876632        


Q ss_pred             cCCceeeeeEEEecCcccccc
Q 044877          189 EGLKSCYCYKIVLKDDSIVDS  209 (244)
Q Consensus       189 ~~l~~~~~Y~i~~~~e~iv~~  209 (244)
                             =|.|-+-++.|.+.
T Consensus       382 -------lydI~~h~DKvl~v  395 (423)
T KOG0313|consen  382 -------LYDIAGHNDKVLSV  395 (423)
T ss_pred             -------ceeeccCCceEEEE
Confidence                   27898888888744

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=5.5e-05  Score=76.42  Aligned_cols=117  Identities=17%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             CCCceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCC
Q 044877           29 RGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKN  106 (244)
Q Consensus        29 ~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~  106 (244)
                      +..|..+..+=+ ...|++||.|+.||+|+-.++++.+ .+..|.|-|.+|.+.|---++|+.++ -+|+|||-.     
T Consensus        54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~-~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we-----  127 (794)
T KOG0276|consen   54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK-TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE-----  127 (794)
T ss_pred             cccchhhheeeeccceEEEecCCceEEEEecccceeeE-EeeccccceeeeeecCCCCeEEecCCccEEEEeecc-----
Confidence            344444444444 4459999999999999999998888 47899999999999999999999997 569999952     


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                              +       .=.+-|      ++.||.+---.--||  +.+  .++..++|-++-|-+|+|.+
T Consensus       128 --------~-------~wa~~q------tfeGH~HyVMqv~fn--PkD--~ntFaS~sLDrTVKVWslgs  172 (794)
T KOG0276|consen  128 --------N-------EWACEQ------TFEGHEHYVMQVAFN--PKD--PNTFASASLDRTVKVWSLGS  172 (794)
T ss_pred             --------C-------ceeeee------EEcCcceEEEEEEec--CCC--ccceeeeeccccEEEEEcCC
Confidence                    1       112344      678888755566888  433  78999999999999999964

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.93  E-value=2.1e-05  Score=75.31  Aligned_cols=111  Identities=18%  Similarity=0.245  Sum_probs=87.7

Q ss_pred             eEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccc
Q 044877           34 QCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTG  112 (244)
Q Consensus        34 t~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~G  112 (244)
                      ..|.++.. +|+++|.|-+||+||..+..+.+| |.||.--|-  ++-..|++|++.+ +++|+|||..-          
T Consensus       324 NvVdfd~k-yIVsASgDRTikvW~~st~efvRt-l~gHkRGIA--ClQYr~rlvVSGSSDntIRlwdi~~----------  389 (499)
T KOG0281|consen  324 NVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRT-LNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIEC----------  389 (499)
T ss_pred             eeeccccc-eEEEecCCceEEEEeccceeeehh-hhcccccce--ehhccCeEEEecCCCceEEEEeccc----------
Confidence            45555655 899999999999999998888885 677776665  4568999999886 69999999742          


Q ss_pred             cccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCc
Q 044877          113 FNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSH  182 (244)
Q Consensus       113 F~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~  182 (244)
                                 ..+|+      .+-||.-=...-+|+       .++++.+.-+.-+-+|||...++-..
T Consensus       390 -----------G~cLR------vLeGHEeLvRciRFd-------~krIVSGaYDGkikvWdl~aaldpra  435 (499)
T KOG0281|consen  390 -----------GACLR------VLEGHEELVRCIRFD-------NKRIVSGAYDGKIKVWDLQAALDPRA  435 (499)
T ss_pred             -----------cHHHH------HHhchHHhhhheeec-------CceeeeccccceEEEEecccccCCcc
Confidence                       34666      566766444566897       58999999999999999999887644

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.92  E-value=0.00014  Score=71.30  Aligned_cols=134  Identities=16%  Similarity=0.200  Sum_probs=91.4

Q ss_pred             ccccceeeecccCC-CceecccccccCCCCceeEEEecCCC-c-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEE
Q 044877            3 DKNGIVQNLANAGA-PVLNWSQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVD   79 (244)
Q Consensus         3 ~~~~~~~~~~~~~~-~~~~~~~~k~Y~~~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vd   79 (244)
                      |.-|.||-.. ..+ -.|.--+    +.--+.-.+-+++.+ . +++||.|+.+++||..+.-. .+-|.++-|-|.+.+
T Consensus        87 D~sG~V~vfD-~k~r~iLR~~~----ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~  160 (487)
T KOG0310|consen   87 DESGHVKVFD-MKSRVILRQLY----AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGD  160 (487)
T ss_pred             CCcCcEEEec-cccHHHHHHHh----hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeec
Confidence            5678888765 222 1222222    333445556667744 4 89999999999999976543 556889999999999


Q ss_pred             eCCCCCEEEEeC--CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCc
Q 044877           80 VTYDGRWILGTT--DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQ  157 (244)
Q Consensus        80 vS~DG~~lLaT~--~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~  157 (244)
                      ++|-...+++|-  +..|+|||++..+                   ++.+.|.      .|.++  +.--|=  +    .
T Consensus       161 ~~~~~~hivvtGsYDg~vrl~DtR~~~-------------------~~v~eln------hg~pV--e~vl~l--p----s  207 (487)
T KOG0310|consen  161 ISPANDHIVVTGSYDGKVRLWDTRSLT-------------------SRVVELN------HGCPV--ESVLAL--P----S  207 (487)
T ss_pred             cccCCCeEEEecCCCceEEEEEeccCC-------------------ceeEEec------CCCce--eeEEEc--C----C
Confidence            999888777663  7889999997531                   2333321      23333  333342  1    4


Q ss_pred             ceEEEEeeCCeEEEEech
Q 044877          158 ERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       158 E~~IvtStG~fvvvWn~~  175 (244)
                      +..|++..|+-|-+||+-
T Consensus       208 gs~iasAgGn~vkVWDl~  225 (487)
T KOG0310|consen  208 GSLIASAGGNSVKVWDLT  225 (487)
T ss_pred             CCEEEEcCCCeEEEEEec
Confidence            688999999999999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.90  E-value=9.8e-05  Score=72.45  Aligned_cols=113  Identities=14%  Similarity=0.181  Sum_probs=87.3

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC---------EEEEeC-CcceEEEE
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR---------WILGTT-DTYLILIC   99 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~---------~lLaT~-~~~L~L~d   99 (244)
                      +++.|+-.+|.|. ++++|.||++|||...... +-.-|.+|.-.|..+..||+|.         -||+.. +++++|||
T Consensus       360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd  438 (524)
T KOG0273|consen  360 GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD  438 (524)
T ss_pred             CceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence            5678999999999 8999999999999975443 4456788998999999988874         344333 68899999


Q ss_pred             eeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          100 TLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       100 t~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      ..-                   +.|  |-      .+|+|..+...-.|+.     .++.+..+|.+..|.+|+.+.
T Consensus       439 v~~-------------------gv~--i~------~f~kH~~pVysvafS~-----~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  439 VES-------------------GVP--IH------TLMKHQEPVYSVAFSP-----NGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             ccC-------------------Cce--eE------eeccCCCceEEEEecC-----CCcEEEecCCCCeeEeccccc
Confidence            741                   222  22      4778877677779982     379999999999999999764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.89  E-value=0.00037  Score=60.09  Aligned_cols=67  Identities=19%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             CceeEEEecCCCc---EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C---cceEEEEee
Q 044877           31 TNFQCFASTGDGS---IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D---TYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~---IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~---~~L~L~dt~  101 (244)
                      .+..+++.+|+|.   |+.|..++.|+|||..+. ...+ ++  ..++..|.+||+|++|+.+. .   ..|.+||+.
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~-~i~~-~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK-KIFS-FG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCccc-EeEe-ec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            3589999999997   455778899999999632 2332 33  56889999999999999764 2   349999974

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.86  E-value=0.00011  Score=77.01  Aligned_cols=84  Identities=19%  Similarity=0.239  Sum_probs=73.4

Q ss_pred             Cceeccccccc-CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c
Q 044877           17 PVLNWSQGHQF-SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T   93 (244)
Q Consensus        17 ~~~~~~~~k~Y-~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~   93 (244)
                      -|++|.+-.-| ...++.+-++.+|++. +|++|.|+.|-+|+.++..+.+ .|.+|...|.+|.+-|=|+|+.+.++ .
T Consensus       115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~-vl~~H~s~VKGvs~DP~Gky~ASqsdDr  193 (942)
T KOG0973|consen  115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK-VLRGHQSLVKGVSWDPIGKYFASQSDDR  193 (942)
T ss_pred             ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee-eeecccccccceEECCccCeeeeecCCc
Confidence            37888888777 4455699999999988 8999999999999999997666 68999999999999999999988885 7


Q ss_pred             ceEEEEee
Q 044877           94 YLILICTL  101 (244)
Q Consensus        94 ~L~L~dt~  101 (244)
                      +|++|+|.
T Consensus       194 tikvwrt~  201 (942)
T KOG0973|consen  194 TLKVWRTS  201 (942)
T ss_pred             eEEEEEcc
Confidence            79999963

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.86  E-value=0.00011  Score=71.73  Aligned_cols=115  Identities=15%  Similarity=0.124  Sum_probs=86.2

Q ss_pred             eeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCCCc
Q 044877           33 FQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNGTT  109 (244)
Q Consensus        33 Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~~~  109 (244)
                      |+...++. ++.++.|..-|..-+||.++...-...+.-+.--|++|++.|--.|++|||  +.+++|||++-       
T Consensus       282 fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~-------  354 (498)
T KOG4328|consen  282 FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ-------  354 (498)
T ss_pred             eeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh-------
Confidence            77777766 556999999999999999876433334445566999999999999999998  58899999863       


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                             |.. |+.| .|       ..+.|...-..|+|+..  +   -+++.|+-+.++=+||-+
T Consensus       355 -------l~~-K~sp-~l-------st~~HrrsV~sAyFSPs--~---gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  355 -------LRG-KASP-FL-------STLPHRRSVNSAYFSPS--G---GTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             -------hcC-CCCc-ce-------ecccccceeeeeEEcCC--C---CceEeeccCCceEEeecc
Confidence                   111 1233 23       34456667788999942  2   349999999999999986

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.85  E-value=4e-05  Score=77.46  Aligned_cols=73  Identities=21%  Similarity=0.306  Sum_probs=62.9

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ..+...-++|+++.|. ||.|+..++||+||-++.++.. -|.||-|-|..|-++.||+.+|+++ +.+|+|||..
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEecccccccee-eeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            4555677999999998 8999999999999998765443 3679999999999999999999886 6889999964

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.85  E-value=0.00041  Score=59.09  Aligned_cols=67  Identities=19%  Similarity=0.305  Sum_probs=48.9

Q ss_pred             ceeEEEecCCCc-EEE-eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc--ceEEEEe
Q 044877           32 NFQCFASTGDGS-IVV-GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT--YLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~-Iav-GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~--~L~L~dt  100 (244)
                      ....++++++|. +++ ++.+|.|++||..+.+... .++ .+..+.++.++|||++++++...  .+..||.
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~  144 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDT  144 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-Eee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence            346788999987 544 4678999999997654333 344 45667999999999999877653  3566674

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.84  E-value=0.00013  Score=72.62  Aligned_cols=99  Identities=15%  Similarity=0.277  Sum_probs=80.4

Q ss_pred             cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCC
Q 044877           43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKI  121 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~k  121 (244)
                      .+++||.|..||+||..++++.. ++-|+++||..|...  +..+++.| +.+|++||...                   
T Consensus       303 ~~~sgs~D~tVkVW~v~n~~~l~-l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-------------------  360 (537)
T KOG0274|consen  303 LLVSGSRDNTVKVWDVTNGACLN-LLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-------------------  360 (537)
T ss_pred             eEeeccCCceEEEEeccCcceEE-EeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-------------------
Confidence            48889999999999998877666 466799999999998  88888888 57799999852                   


Q ss_pred             CcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          122 AAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       122 p~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                        -.+|+      .+.||...-++-.|+     + .+.++.+|.+..+-+||+..-
T Consensus       361 --~~cl~------sl~gH~~~V~sl~~~-----~-~~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  361 --GKCLK------SLSGHTGRVYSLIVD-----S-ENRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             --ceeee------eecCCcceEEEEEec-----C-cceEEeeeeccceEeecCCch
Confidence              23566      677877766655554     1 299999999999999999887

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.84  E-value=0.0005  Score=58.55  Aligned_cols=67  Identities=13%  Similarity=0.142  Sum_probs=52.0

Q ss_pred             eeEEEecCCCc-E-EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           33 FQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      ..+++.+++|. + ++++.+|.|++||..+++... .++...+ +..++++|||+.+++++  ++.|++||..
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~  103 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG-TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIE  103 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            46789999997 4 678899999999997765444 3554334 57899999999988776  3679999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.82  E-value=9.2e-05  Score=63.80  Aligned_cols=67  Identities=19%  Similarity=0.340  Sum_probs=50.0

Q ss_pred             CceeEEEecCCCc-EEEeC---CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-C------CcceEEEE
Q 044877           31 TNFQCFASTGDGS-IVVGS---LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-T------DTYLILIC   99 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS---~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~------~~~L~L~d   99 (244)
                      .+..++..+|+|+ ||+|+   ..|.|++||....+...+ .. +. -++.++.||||++++++ +      ++.++||+
T Consensus       101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-FE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-cc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence            3456899999998 77775   457899999976554442 22 33 47999999999999954 3      46689998


Q ss_pred             e
Q 044877          100 T  100 (244)
Q Consensus       100 t  100 (244)
                      .
T Consensus       178 ~  178 (194)
T PF08662_consen  178 F  178 (194)
T ss_pred             e
Confidence            5

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.82  E-value=9.9e-05  Score=75.33  Aligned_cols=118  Identities=16%  Similarity=0.209  Sum_probs=86.9

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCE-EEEe--CCcceEEEEeeeccC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRW-ILGT--TDTYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~-lLaT--~~~~L~L~dt~~~~~  105 (244)
                      ..|.--++++|.|. +|+|+.||.+|+||...+.+.- .|.|||.+|.+++|.|+-.+ +|+.  .+..+++||..-+  
T Consensus       105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th-~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~--  181 (775)
T KOG0319|consen  105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH-SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK--  181 (775)
T ss_pred             CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE-EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC--
Confidence            55677899999887 8999999999999998776554 78999999999999998765 5544  4688999996421  


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~  179 (244)
                                       .+ +|.      ...+|.-.-|.--|.-   +  ....+..+-|+-+++||+++-+.
T Consensus       182 -----------------~t-cl~------~~~~H~S~vtsL~~~~---d--~~~~ls~~RDkvi~vwd~~~~~~  226 (775)
T KOG0319|consen  182 -----------------RT-CLH------TMILHKSAVTSLAFSE---D--SLELLSVGRDKVIIVWDLVQYKK  226 (775)
T ss_pred             -----------------ch-HHH------HHHhhhhheeeeeecc---C--CceEEEeccCcEEEEeehhhhhh
Confidence                             11 232      2333433344445551   2  57788899999999999965543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.81  E-value=0.00046  Score=65.20  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=58.2

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC--EEEEeCC-cceEEEEee
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR--WILGTTD-TYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~--~lLaT~~-~~L~L~dt~  101 (244)
                      -..||+|++.- ++|+||.|-.|++||.+...+.-++|. +.+.|+.+.|+++-.  |||+.++ ..|.+|++.
T Consensus        44 ~sitavAVs~~-~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   44 GSITALAVSGP-YVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cceeEEEecce-eEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            34899999876 799999999999999977666665444 789999999999987  9999986 559999973

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.80  E-value=0.0002  Score=69.94  Aligned_cols=150  Identities=16%  Similarity=0.224  Sum_probs=98.6

Q ss_pred             cccceeeecccCCCceeccccccc---CC-CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCC---------
Q 044877            4 KNGIVQNLANAGAPVLNWSQGHQF---SR-GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFP---------   69 (244)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~k~Y---~~-~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lp---------   69 (244)
                      +.|-|+.+.   +-.++-.+..++   .. ....+|++.++++. +.++|.+|.|-=|+..+++.-+..+|         
T Consensus       115 ~~Gr~~r~~---a~~v~~~~s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~  191 (479)
T KOG0299|consen  115 QSGRVRRLV---ADKVQAPESSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHG  191 (479)
T ss_pred             hcceeehhh---hhhccccccccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhcc
Confidence            456666554   334555555553   22 34489999999886 99999999999999977652211222         


Q ss_pred             --------CCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccch-hhcCC
Q 044877           70 --------GLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDS-HLAGV  139 (244)
Q Consensus        70 --------glGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~-~~~G~  139 (244)
                              ++-.-|+.+++|+||+||+..-. .-|.|||+.-.                            ||+ .+.||
T Consensus       192 ~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~----------------------------ehv~~~~gh  243 (479)
T KOG0299|consen  192 NPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL----------------------------EHVKVFKGH  243 (479)
T ss_pred             CCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCccc----------------------------chhhccccc
Confidence                    45567899999999999976665 55889997521                            122 24555


Q ss_pred             ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccC
Q 044877          140 NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEG  190 (244)
Q Consensus       140 ~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~  190 (244)
                      --.--.--|--     ...+.+++|.++-+-+||+++.-- ....|.+|.+
T Consensus       244 r~~V~~L~fr~-----gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~  288 (479)
T KOG0299|consen  244 RGAVSSLAFRK-----GTSELYSASADRSVKVWSIDQLSY-VETLYGHQDG  288 (479)
T ss_pred             ccceeeeeeec-----CccceeeeecCCceEEEehhHhHH-HHHHhCCccc
Confidence            43223345541     257789999999999999987532 2234555543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=97.80  E-value=0.00012  Score=70.36  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=74.5

Q ss_pred             CCCcEEEeCCCCcEEEEecccc-ccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCccccccccc
Q 044877           40 GDGSIVVGSLDGKIRLYSSNSM-RQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRM  117 (244)
Q Consensus        40 ~~G~IavGS~dG~IRLyD~~~~-r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~  117 (244)
                      ++|-+|++|.||.||+||.+.. +.+--+...++.-|.-|+++-+.-+|++..+ .+|.|||.+.          |... 
T Consensus       269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~----------~~~~-  337 (440)
T KOG0302|consen  269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ----------FKSG-  337 (440)
T ss_pred             cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhh----------ccCC-
Confidence            3555999999999999999865 3333344789999999999999996656665 7799999864          3311 


Q ss_pred             CCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877          118 GNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       118 ~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~  179 (244)
                         .|.          +++.-|..--|+-.++  +-  ....+.+++.+.-+-+||+.-=+.
T Consensus       338 ---~pV----------A~fk~Hk~pItsieW~--p~--e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  338 ---QPV----------ATFKYHKAPITSIEWH--PH--EDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             ---Ccc----------eeEEeccCCeeEEEec--cc--cCceEEeccCCCcEEEEEeeccCC
Confidence               121          0222233333455555  31  245566677788999999964443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=97.79  E-value=0.00027  Score=72.67  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=94.8

Q ss_pred             ceecccccccCCCCceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCC--C-CCCeeEEEeCCCCCEEEEeC-C
Q 044877           18 VLNWSQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPG--L-GSPIRYVDVTYDGRWILGTT-D   92 (244)
Q Consensus        18 ~~~~~~~k~Y~~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpg--l-GdPI~~vdvS~DG~~lLaT~-~   92 (244)
                      +......++-.+++..--++..| .++|+++..|-.||+||...+++.|++--.  + |++ +-|.+-|.|-||++.| +
T Consensus       584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l-IKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL-IKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce-EEEEECCCccEEEEeecC
Confidence            44444555556677777788999 456999999999999999999888854322  2 444 4588889999999888 5


Q ss_pred             cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEE
Q 044877           93 TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIW  172 (244)
Q Consensus        93 ~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvW  172 (244)
                      .+|-++|-.-                     ..+..      ..+||.--.|.-+|.     +.=...|..|.+.++++|
T Consensus       663 ktl~~~Df~s---------------------gEcvA------~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  663 KTLCFVDFVS---------------------GECVA------QMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             CceEEEEecc---------------------chhhh------hhcCcchheeeeeec-----ccchhheeecCCceEEEE
Confidence            8899999531                     22333      577887777888997     236889999999999999


Q ss_pred             ech
Q 044877          173 NFQ  175 (244)
Q Consensus       173 n~~  175 (244)
                      -+-
T Consensus       711 ~lp  713 (1080)
T KOG1408|consen  711 KLP  713 (1080)
T ss_pred             ECc
Confidence            874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=97.78  E-value=0.00035  Score=65.04  Aligned_cols=117  Identities=22%  Similarity=0.350  Sum_probs=83.5

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC---cc---eEEEEeeeccC
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD---TY---LILICTLFTDK  105 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~---~~---L~L~dt~~~~~  105 (244)
                      +.|+..+-+-. +++||.|..+||||..++++.- +++ .+.||..++|+.+|..+|++++   .|   |-++|++..+.
T Consensus        55 vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la-~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~  132 (327)
T KOG0643|consen   55 VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA-TWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS  132 (327)
T ss_pred             EEEEEecCCcceeeeccccceeEEEEcCCCcEEE-Eee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence            67777777544 9999999999999999987554 355 9999999999999999998874   22   77778753211


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .          .  ....|.+.-+.||.        +-++|-  |.+   .+|.+|.+-...-+=.||.+.
T Consensus       133 ~----------~--~s~ep~~kI~t~~s--------kit~a~--Wg~---l~~~ii~Ghe~G~is~~da~~  178 (327)
T KOG0643|consen  133 D----------I--DSEEPYLKIPTPDS--------KITSAL--WGP---LGETIIAGHEDGSISIYDART  178 (327)
T ss_pred             h----------h--cccCceEEecCCcc--------ceeeee--ecc---cCCEEEEecCCCcEEEEEccc
Confidence            1          0  01235666666662        223443  433   258888888888999999884

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.76  E-value=0.00012  Score=72.88  Aligned_cols=111  Identities=14%  Similarity=0.254  Sum_probs=81.9

Q ss_pred             CCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           29 RGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ...++.||..+ .+.+++||.||.|++||..++++.+ .|-||-..|+++.+.+. ..+++++ +++|++||..-     
T Consensus       330 h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~-sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~-----  401 (537)
T KOG0274|consen  330 HTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLK-SLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT-----  401 (537)
T ss_pred             ccccEEEEEec-CCEEEEEecCceEEEEEhhhceeee-eecCCcceEEEEEecCc-ceEEeeeeccceEeecCCc-----
Confidence            55678899988 4479999999999999999998888 47889999999977665 6666666 57799999642     


Q ss_pred             CcccccccccCCCCCcc-eeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAP-RLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~p-r~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      + +++.      ++.|+.---..-.|       .....+..+.++-+-+||.+.
T Consensus       402 ----------------~~~c~~------tl~~h~~~v~~l~~-------~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  402 ----------------KRKCIH------TLQGHTSLVSSLLL-------RDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             ----------------hhhhhh------hhcCCccccccccc-------ccceeEeccccccEEEeeccc
Confidence                            2 4444      45554321111122       257889999999999996653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.76  E-value=0.00033  Score=72.93  Aligned_cols=141  Identities=18%  Similarity=0.244  Sum_probs=92.8

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-EeCCcceEEEEeeeccCCC-
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTTDTYLILICTLFTDKNG-  107 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~~~~L~L~dt~~~~~~~-  107 (244)
                      .|..+++++.+|. ||.||.|=.|+|-+....- ++..+.||..||.+|++.|.|.+|+ ++|+..+++||.+-..-.. 
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence            4567999999998 9999999999999987665 3446789999999999999999998 5678999999986321100 


Q ss_pred             ----Ccccccc-cccC---CCCCcceeeeeCccc--h------------hhcCCc--cceeeeeeeeecCCCCcceEEEE
Q 044877          108 ----TTKTGFN-GRMG---NKIAAPRLLKLTPLD--S------------HLAGVN--NKFHKAQFSWVTENGKQERHLVA  163 (244)
Q Consensus       108 ----~~~~GF~-~~~~---~~kp~pr~L~L~Pe~--~------------~~~G~~--~~Ft~akFn~~tg~~~~E~~Ivt  163 (244)
                          .-.++|. .++-   .=-|....|.+-|.+  +            .+-+..  -+|.--.|+     ..++.+...
T Consensus       176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs  250 (933)
T KOG1274|consen  176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS-----PNGKYIAAS  250 (933)
T ss_pred             cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc-----CCCcEEeee
Confidence                0112333 1110   011333344433322  1            111111  124333443     237888889


Q ss_pred             eeCCeEEEEechhh
Q 044877          164 TVGKFSVIWNFQQV  177 (244)
Q Consensus       164 StG~fvvvWn~~kV  177 (244)
                      +..+-+.+||.++.
T Consensus       251 ~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  251 TLDGQILVWNVDTH  264 (933)
T ss_pred             ccCCcEEEEecccc
Confidence            99999999999963

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.75  E-value=0.00011  Score=68.01  Aligned_cols=80  Identities=18%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             ccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           24 GHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        24 ~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .|.|.--.++++...+|+-. .+.|..|+.++-||-.++...-..-.|+-.||.+|.+||||....+.+ +.+||||.+.
T Consensus       218 lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  218 LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            46677777789999999645 899999999999999876544323478999999999999999998888 4889999997


Q ss_pred             ec
Q 044877          102 FT  103 (244)
Q Consensus       102 ~~  103 (244)
                      +.
T Consensus       298 ~~  299 (334)
T KOG0278|consen  298 PG  299 (334)
T ss_pred             CC
Confidence            64

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=97.74  E-value=0.00012  Score=70.43  Aligned_cols=110  Identities=19%  Similarity=0.288  Sum_probs=74.8

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEE-eCCCCC---EEEEeCCcceEEEEeeeccCCCC
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVD-VTYDGR---WILGTTDTYLILICTLFTDKNGT  108 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vd-vS~DG~---~lLaT~~~~L~L~dt~~~~~~~~  108 (244)
                      +++|-.. .++|.+||.||.+|+||+.+ +..+ .+-|+++||.+++ +.+|..   ++.|.-+.+|+||.....+    
T Consensus       108 VSsv~~~-~~~IltgsYDg~~riWd~~G-k~~~-~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~----  180 (423)
T KOG0313|consen  108 VSSVKGA-SKWILTGSYDGTSRIWDLKG-KSIK-TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE----  180 (423)
T ss_pred             hhhhccc-CceEEEeecCCeeEEEecCC-ceEE-EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch----
Confidence            4555555 45799999999999999965 4566 5789999999774 334444   4434346889999874311    


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                                        +.++-++. -.||.-...+-.-+     ..+.+.|.+|-+..+=+||
T Consensus       181 ------------------~~~~~~~~-~~GHk~~V~sVsv~-----~sgtr~~SgS~D~~lkiWs  221 (423)
T KOG0313|consen  181 ------------------NKVKALKV-CRGHKRSVDSVSVD-----SSGTRFCSGSWDTMLKIWS  221 (423)
T ss_pred             ------------------hhhhHHhH-hcccccceeEEEec-----CCCCeEEeecccceeeecc
Confidence                              11111111 22776555544443     3479999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=97.73  E-value=9.4e-05  Score=68.48  Aligned_cols=90  Identities=22%  Similarity=0.386  Sum_probs=67.8

Q ss_pred             cceeeecccCCCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC
Q 044877            6 GIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG   84 (244)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG   84 (244)
                      |-||-|.   =|-|.-.|.=+-.. .+=-||.++|+|. +|+||.|-.+-|||..-.-|.+ .++.|--||.-|.||.||
T Consensus       169 G~v~ILs---ypsLkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R-~isRldwpVRTlSFS~dg  243 (313)
T KOG1407|consen  169 GCVEILS---YPSLKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICER-CISRLDWPVRTLSFSHDG  243 (313)
T ss_pred             ceEEEEe---ccccccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhhe-eeccccCceEEEEeccCc
Confidence            5566654   33343334333333 3446999999997 9999999999999997655667 579999999999999999


Q ss_pred             CEEEEeCC-cceEEEEe
Q 044877           85 RWILGTTD-TYLILICT  100 (244)
Q Consensus        85 ~~lLaT~~-~~L~L~dt  100 (244)
                      ++|++++. -+|-|=++
T Consensus       244 ~~lASaSEDh~IDIA~v  260 (313)
T KOG1407|consen  244 RMLASASEDHFIDIAEV  260 (313)
T ss_pred             ceeeccCccceEEeEec
Confidence            99998885 55655454

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=0.00061  Score=68.76  Aligned_cols=71  Identities=21%  Similarity=0.353  Sum_probs=60.0

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCE-EEEeC-CcceEEEEeeecc
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRW-ILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~-lLaT~-~~~L~L~dt~~~~  104 (244)
                      ...|+.+++.|. +|+||.||.+|+|-..++||.++.  .+.+-|.+|+++|.+.. |||.+ ...++|.++.+.+
T Consensus       402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            488999999998 999999999999999999999974  37889999999998864 45554 4558888987754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=97.68  E-value=0.00041  Score=65.97  Aligned_cols=106  Identities=18%  Similarity=0.296  Sum_probs=73.3

Q ss_pred             CCc-EEEeCCCCcEEEEeccccc-cceecCCCC-CCCeeEEEeCCCCCEEEEeCC-----cceEEEEeeeccCCCCcccc
Q 044877           41 DGS-IVVGSLDGKIRLYSSNSMR-QAKTAFPGL-GSPIRYVDVTYDGRWILGTTD-----TYLILICTLFTDKNGTTKTG  112 (244)
Q Consensus        41 ~G~-IavGS~dG~IRLyD~~~~r-~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~-----~~L~L~dt~~~~~~~~~~~G  112 (244)
                      .++ |.++|.||.||+||.+..+ .|+-..-+. |.|-+++|....++-+.+.+.     -.|.|||.+-.         
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~---------  153 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE---------  153 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc---------
Confidence            444 9999999999999998543 333222222 578999999988888877763     44999998631         


Q ss_pred             cccccCCCCCcceeeeeCccchhhc-CCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          113 FNGRMGNKIAAPRLLKLTPLDSHLA-GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       113 F~~~~~~~kp~pr~L~L~Pe~~~~~-G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                               .+|  |+      .+. -|.-.-|.-+|.  +  ...+.++.+|++.+|-++|+++
T Consensus       154 ---------qq~--l~------~~~eSH~DDVT~lrFH--P--~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  154 ---------QQL--LR------QLNESHNDDVTQLRFH--P--SDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             ---------cch--hh------hhhhhccCcceeEEec--C--CCCCeEEeecccceEEeeecCC
Confidence                     111  11      111 133345667787  3  2379999999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.00044  Score=64.02  Aligned_cols=116  Identities=15%  Similarity=0.192  Sum_probs=80.2

Q ss_pred             ceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEeeeccCCC
Q 044877           32 NFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICTLFTDKNG  107 (244)
Q Consensus        32 ~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt~~~~~~~  107 (244)
                      .+-++-.++ .++ ++++|=||.|+|||..-.+ .-+++.|+.+-|-...+||--.-+++. + +.+|+|||.+..    
T Consensus       106 EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----  180 (311)
T KOG0277|consen  106 EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----  180 (311)
T ss_pred             heEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----
Confidence            456677777 444 8899999999999986554 444588999999999999765555544 3 688999996531    


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~  179 (244)
                       |               +.+. -|        .++|+--.++|.--+  ...+..++.++.|..||++.+..
T Consensus       181 -g---------------k~~~-i~--------ah~~Eil~cdw~ky~--~~vl~Tg~vd~~vr~wDir~~r~  225 (311)
T KOG0277|consen  181 -G---------------KFMS-IE--------AHNSEILCCDWSKYN--HNVLATGGVDNLVRGWDIRNLRT  225 (311)
T ss_pred             -C---------------ceeE-EE--------eccceeEeecccccC--CcEEEecCCCceEEEEehhhccc
Confidence             1               1111 01        144666677886322  34555567889999999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.64  E-value=0.00043  Score=65.14  Aligned_cols=122  Identities=16%  Similarity=0.216  Sum_probs=83.1

Q ss_pred             ccccc----CCCCceeEEEecC-CCc-EEEeCCCCcEEEEeccc-cc-cceecCCCCCCCeeEEEeCCCCCEEEEe-CCc
Q 044877           23 QGHQF----SRGTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNS-MR-QAKTAFPGLGSPIRYVDVTYDGRWILGT-TDT   93 (244)
Q Consensus        23 ~~k~Y----~~~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~-~r-~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~   93 (244)
                      +.|+|    ....-++++++|| ... ++.||=||+||+|+... +. ..| ..-.|..||..++.|-||.-+.+. |++
T Consensus        16 ~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-a~~~~~~PvL~v~WsddgskVf~g~~Dk   94 (347)
T KOG0647|consen   16 PNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-AQQSHDGPVLDVCWSDDGSKVFSGGCDK   94 (347)
T ss_pred             cccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccch-hhhccCCCeEEEEEccCCceEEeeccCC
Confidence            45566    2334489999999 333 77999999999999843 11 123 455789999999999999988754 689


Q ss_pred             ceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877           94 YLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus        94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      .++|||..-    |               +++.+.       ....++    ..+.|+.+.+ -+-+..+|=++-+-.||
T Consensus        95 ~~k~wDL~S----~---------------Q~~~v~-------~Hd~pv----kt~~wv~~~~-~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   95 QAKLWDLAS----G---------------QVSQVA-------AHDAPV----KTCHWVPGMN-YQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             ceEEEEccC----C---------------Ceeeee-------ecccce----eEEEEecCCC-cceeEecccccceeecc
Confidence            999999742    1               122222       111122    1345554332 45677789999999999


Q ss_pred             chh
Q 044877          174 FQQ  176 (244)
Q Consensus       174 ~~k  176 (244)
                      .++
T Consensus       144 ~R~  146 (347)
T KOG0647|consen  144 TRS  146 (347)
T ss_pred             cCC
Confidence            983

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.63  E-value=0.00017  Score=68.96  Aligned_cols=67  Identities=12%  Similarity=0.199  Sum_probs=58.1

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      ++.+..-++-+|++++.+|.||.||.++++ .|..+-||-.+|..+.+|||++.||.+++ ++.++++.
T Consensus       330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~-l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  330 VTKLKWLNTDYLLTACANGKVRQWDARTGQ-LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             eEEEEEcCcchheeeccCceEEeeeccccc-eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            555666666679999999999999999995 77788999999999999999999999995 77888774

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=97.62  E-value=0.00019  Score=68.18  Aligned_cols=140  Identities=15%  Similarity=0.099  Sum_probs=86.2

Q ss_pred             eeEEEecCCC--cEEEeCCCCcEEEEeccccccceec--CCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           33 FQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQAKTA--FPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        33 Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~aKt~--lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ...+-+.|+-  .|++||.|-.||||+..++.+.--+  +.||.+.|.+||++.||.+|++.- +..|+||+...++=++
T Consensus       138 INeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~  217 (385)
T KOG1034|consen  138 INEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN  217 (385)
T ss_pred             chhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence            3344466644  3899999999999999887654311  357889999999999999997554 5779999986544222


Q ss_pred             C--cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877          108 T--TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG  180 (244)
Q Consensus       108 ~--~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g  180 (244)
                      .  -..+|..- +...|-|+.-.+-|.=.+.--|..--...+|=       ++-+++=|+++-++-|-.-++.+.
T Consensus       218 ~lE~s~~~~~~-~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-------gd~ilSkscenaI~~w~pgkl~e~  284 (385)
T KOG1034|consen  218 KLELSITYSPN-KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-------GDFILSKSCENAIVCWKPGKLEES  284 (385)
T ss_pred             hhhhhcccCCC-CccCcCCccccccccccccccccchHHHHHHH-------hhheeecccCceEEEEecchhhhh
Confidence            2  22222210 12234454444333311111111111122332       478899999999999998666655

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.62  E-value=9.3e-05  Score=46.71  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=30.2

Q ss_pred             cCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEE
Q 044877           67 AFPGLGSPIRYVDVTYDGRWILGTTD-TYLILIC   99 (244)
Q Consensus        67 ~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~d   99 (244)
                      .+.++..+|.+|+++|++.+|++++. .+|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57899999999999999999998874 8899997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.62  E-value=0.00038  Score=66.71  Aligned_cols=145  Identities=17%  Similarity=0.165  Sum_probs=98.4

Q ss_pred             cCCCceecccccccC-------CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC
Q 044877           14 AGAPVLNWSQGHQFS-------RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR   85 (244)
Q Consensus        14 ~~~~~~~~~~~k~Y~-------~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~   85 (244)
                      ++-|+..|++..+|.       -.-..+||++=|.|. |+++|.|..|+.||.-++-+.|| +|++.+=+..|+++.||.
T Consensus       170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t-~~~h~ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT-FPGHSEWVRMVRVNQDGT  248 (406)
T ss_pred             CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe-ccCchHhEEEEEecCCee
Confidence            445578899888772       345699999999886 99999999999999999888884 799999999999999999


Q ss_pred             EEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEe
Q 044877           86 WILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVAT  164 (244)
Q Consensus        86 ~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtS  164 (244)
                      -+.+.+ +.+|++|-.--++.+-+    |.   +-+-| -.++...||         .|.+.-|.-....+......++|
T Consensus       249 i~As~s~dqtl~vW~~~t~~~k~~----lR---~hEh~-vEci~wap~---------~~~~~i~~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATKQCKAE----LR---EHEHP-VECIAWAPE---------SSYPSISEATGSTNGGQVLGSGS  311 (406)
T ss_pred             EEEecCCCceEEEEEeccchhhhh----hh---ccccc-eEEEEeccc---------ccCcchhhccCCCCCccEEEeec
Confidence            775443 47799999743211110    00   00111 233333333         22333222111123356788888


Q ss_pred             eCCeEEEEechh
Q 044877          165 VGKFSVIWNFQQ  176 (244)
Q Consensus       165 tG~fvvvWn~~k  176 (244)
                      -++-+-.||+..
T Consensus       312 rDktIk~wdv~t  323 (406)
T KOG0295|consen  312 RDKTIKIWDVST  323 (406)
T ss_pred             ccceEEEEeccC
Confidence            899999998764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.00053  Score=65.51  Aligned_cols=96  Identities=24%  Similarity=0.311  Sum_probs=74.7

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcc
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTK  110 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~  110 (244)
                      .+|+.++.++. |.++|.|-.+|+--.+.+++.|. +.||..-|.+..+|+||.+|++++ +.++++|+..-++.-    
T Consensus       309 vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~----  383 (508)
T KOG0275|consen  309 VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL----  383 (508)
T ss_pred             eeEEEEccCcchhhcccccceEEEeccccchhHHH-hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh----
Confidence            79999999887 99999999999999999998884 789999999999999999999665 788999997654311    


Q ss_pred             cccccccCCCCCcc--eeeeeCccch
Q 044877          111 TGFNGRMGNKIAAP--RLLKLTPLDS  134 (244)
Q Consensus       111 ~GF~~~~~~~kp~p--r~L~L~Pe~~  134 (244)
                      .-|. .++..-|..  ..|.-+|||.
T Consensus       384 ~Tfk-~~~~d~~vnsv~~~PKnpeh~  408 (508)
T KOG0275|consen  384 STFK-PLGTDYPVNSVILLPKNPEHF  408 (508)
T ss_pred             hhcc-CCCCcccceeEEEcCCCCceE
Confidence            1132 344444442  2333368886

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.60  E-value=0.00018  Score=70.21  Aligned_cols=88  Identities=13%  Similarity=0.182  Sum_probs=65.5

Q ss_pred             cccCCCceeccccccc-CC-----CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC
Q 044877           12 ANAGAPVLNWSQGHQF-SR-----GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG   84 (244)
Q Consensus        12 ~~~~~~~~~~~~~k~Y-~~-----~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG   84 (244)
                      ...++.+.-|.-..|- ..     --++++++++++|+ +|+++.||.|+|||++..++-||..-.-+-+|.++++-..|
T Consensus       365 gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG  444 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG  444 (506)
T ss_pred             cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCC
Confidence            3355556666544433 12     23589999999999 99999999999999988877776544455689999999999


Q ss_pred             CEEEEeCCcceEEEEe
Q 044877           85 RWILGTTDTYLILICT  100 (244)
Q Consensus        85 ~~lLaT~~~~L~L~dt  100 (244)
                      +|+.+. -+.|.++-.
T Consensus       445 t~L~~~-g~~l~Vy~~  459 (506)
T KOG0289|consen  445 TYLGIA-GSDLQVYIC  459 (506)
T ss_pred             CeEEee-cceeEEEEE
Confidence            999877 444555543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=97.60  E-value=0.00015  Score=73.74  Aligned_cols=72  Identities=18%  Similarity=0.179  Sum_probs=61.2

Q ss_pred             CCCceeEEEecCCC-c-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           29 RGTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        29 ~~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      -..+++++.++|-. . +|++|.|-.|+|||..+++ -+..|-||-|-|-+++.||||+.+..-|+ .+|++++-+
T Consensus       676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             ccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence            34568899999933 3 8999999999999998764 56678999999999999999999988896 779998753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=97.58  E-value=0.00045  Score=65.64  Aligned_cols=112  Identities=17%  Similarity=0.230  Sum_probs=81.4

Q ss_pred             cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC-CEEEEeCC-cceEEEEeeeccCCCCcccccccccCCC
Q 044877           43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG-RWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNK  120 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG-~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~  120 (244)
                      .+|+|+.-|.||+.|..++++.+ .+-|||+.|..|.+-|+- ++||+.++ ..||||+.+-                  
T Consensus       107 ~la~~G~~GvIrVid~~~~~~~~-~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~------------------  167 (385)
T KOG1034|consen  107 FLAAGGYLGVIRVIDVVSGQCSK-NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT------------------  167 (385)
T ss_pred             eEEeecceeEEEEEecchhhhcc-ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC------------------
Confidence            38889999999999998887777 688999999999999887 67777774 7799999752                  


Q ss_pred             CCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech--hhhcCCccc
Q 044877          121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ--QVKNGSHEC  184 (244)
Q Consensus       121 kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~--kV~~g~~~~  184 (244)
                         ..++.+--   -++||--.-=+.-|+  + +  +++..+.-.+--+.+|++.  ++++.-..+
T Consensus       168 ---~~Cv~VfG---G~egHrdeVLSvD~~--~-~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s  222 (385)
T KOG1034|consen  168 ---DVCVAVFG---GVEGHRDEVLSVDFS--L-D--GDRIASCGMDHSLKLWRLNVKEFKNKLELS  222 (385)
T ss_pred             ---CeEEEEec---ccccccCcEEEEEEc--C-C--CCeeeccCCcceEEEEecChhHHhhhhhhh
Confidence               23443000   123443333355666  2 3  5789899999999999998  666554433

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=97.57  E-value=0.00055  Score=69.36  Aligned_cols=113  Identities=12%  Similarity=0.217  Sum_probs=76.7

Q ss_pred             EEecCCCcEEEeCC-CCcEEEEeccccccceec-------CCCC---CCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           36 FASTGDGSIVVGSL-DGKIRLYSSNSMRQAKTA-------FPGL---GSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        36 vats~~G~IavGS~-dG~IRLyD~~~~r~aKt~-------lpgl---GdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      +.+=.+-.||+++. ||.||+||++...++.-.       +|-.   ---++.+.+-.-|.+|+|+| ++.|.+|++.  
T Consensus       224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~--  301 (720)
T KOG0321|consen  224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR--  301 (720)
T ss_pred             EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc--
Confidence            33333445999888 999999999754433111       1111   12367777778889999999 5889999974  


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCC-ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGV-NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~-~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                            .|.+.|.- .+.|+ .-.|+.....    ...++.++.||.+.-+++|.+...
T Consensus       302 ----------------------s~s~sP~~-~~sg~~~~sf~vks~l----Spd~~~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  302 ----------------------SLSISPVA-EFSGKLNSSFYVKSEL----SPDDCSLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             ----------------------ccCcCchh-hccCcccceeeeeeec----CCCCceEeccCCCcceeeeeecCc
Confidence                                  23333332 24454 3577777665    234799999999999999999864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.57  E-value=0.00018  Score=69.03  Aligned_cols=69  Identities=16%  Similarity=0.260  Sum_probs=56.7

Q ss_pred             CCceeEEEecCCC--cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           30 GTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      ..-+.|+|-+|+-  .+|+||-||.|||||.....+.+ .+..+-.+|.+|+++. +.++-+.-+++++.|-.
T Consensus        66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-TFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-eeecccCceeeEEecc-cceEEecCCcceeeeec
Confidence            3447899999964  39999999999999997766666 4677888999999999 66665666799999974

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.56  E-value=0.00051  Score=66.97  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEeee
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      +|+||.|-+|.|||.-++++++ .++.+|.+|..+.+.| ...+||+.| +.++.|.|.+.
T Consensus       259 LaSgsaD~TV~lWD~~~g~p~~-s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  259 LASGSADKTVKLWDVDTGKPKS-SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             EEecCCCceEEEEEcCCCCcce-ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            8999999999999999997666 6889999999999985 567777777 68899999875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.56  E-value=0.00011  Score=75.05  Aligned_cols=72  Identities=14%  Similarity=0.226  Sum_probs=60.5

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      .-+.++|+++|.|+ .|.||.|+++.+||.+.+-|.++ ..++-.-+-.+.+||||+|+....+ +.++|||...
T Consensus       112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a  185 (825)
T KOG0267|consen  112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA  185 (825)
T ss_pred             ccCcceeeeccceEEeccccccccceehhhhccCceee-ecCCcceeEEEeecCCCceeeccCCcceeeeecccc
Confidence            44678999999998 89999999999999986556774 5676667888899999999998775 8899999753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.56  E-value=0.00073  Score=69.57  Aligned_cols=77  Identities=19%  Similarity=0.369  Sum_probs=65.5

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      -.=-++..|++.||+|. +|+|=.|.++++|=.-+.+ -...|=||.-||++||+|||++.|+..+ +..+.+|=..+.|
T Consensus       505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD  583 (888)
T KOG0306|consen  505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD  583 (888)
T ss_pred             EeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence            33446789999999998 9999999999999887775 4556779999999999999999987554 6889999998865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=97.55  E-value=0.0002  Score=66.56  Aligned_cols=72  Identities=17%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      ..+.+.+...+-|. |++|..||.|+.||.+++......-.-|+..|..|.+|+|..+.+..|. ++-.|||..
T Consensus       147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence            35578888889776 9999999999999998876565566678999999999999999998885 779999964

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=97.54  E-value=0.0011  Score=67.63  Aligned_cols=66  Identities=17%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEE
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILIC   99 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~d   99 (244)
                      .+..|++...+|.+++||-|-..|+|-..   .+...++||-.+|..|..-|++++|=+..+.+|+||.
T Consensus       102 snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk  167 (745)
T KOG0301|consen  102 SNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK  167 (745)
T ss_pred             cceeeeecCCcCceEecccccceEEecch---hhhcccCCcchheeeeeecCCCcEEeccCcceeeecc
Confidence            34555555555555666666666666551   2222355555555555555555444344455555554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.54  E-value=0.0029  Score=52.98  Aligned_cols=70  Identities=21%  Similarity=0.376  Sum_probs=55.7

Q ss_pred             CceeEEEecCCCc-EEEeCC-CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEee
Q 044877           31 TNFQCFASTGDGS-IVVGSL-DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~-dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt~  101 (244)
                      ..+.+++++++|. +++++. ||.+++||....+... .+.++..+|..++++|+|.+++++ . +..|++||..
T Consensus       156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~  229 (466)
T COG2319         156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS  229 (466)
T ss_pred             ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE-eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence            3467999999995 888885 9999999997654444 467789999999999999955555 3 5779999653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=97.54  E-value=0.0014  Score=60.21  Aligned_cols=113  Identities=19%  Similarity=0.297  Sum_probs=83.2

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT  109 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~  109 (244)
                      -+++||.+|.|. +|+|..|-.+-|||.+++|..+.+-| +...|.+|.|||-..|+|..+ +..|+|-|.+ .  +   
T Consensus       233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlq-g--d---  305 (350)
T KOG0641|consen  233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-G--D---  305 (350)
T ss_pred             eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccceEEEeecc-c--c---
Confidence            478999999999 89999999999999999998875555 999999999999999998655 6889998864 1  1   


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeee-eeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA-QFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a-kFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                       +  .      +..|..+-  .|      +.-   ++ .+.|.+   +.=..|.+|.++-+-.|-+
T Consensus       306 -l--a------~el~~~vv--~e------hkd---k~i~~rwh~---~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  306 -L--A------HELPIMVV--AE------HKD---KAIQCRWHP---QDFSFISSSADKTATLWAL  348 (350)
T ss_pred             -h--h------hcCceEEE--Ee------ccC---ceEEEEecC---ccceeeeccCcceEEEecc
Confidence             1  1      01222221  11      111   23 566654   2456789999999999965

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=97.53  E-value=0.0015  Score=60.75  Aligned_cols=69  Identities=13%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccc--cccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNS--MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~--~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      .-+.+||.+|.|+ +|+||.|..+-+|-...  ..+ -..|.||-..|.+|++|++|.|| |||  ++.+-+|.+.
T Consensus        62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec-v~~lEGHEnEVK~Vaws~sG~~L-ATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC-VATLEGHENEVKCVAWSASGNYL-ATCSRDKSVWIWEID  135 (312)
T ss_pred             heeeeeeecCCCcEEEEeeccceEEEeecCCCceeE-EeeeeccccceeEEEEcCCCCEE-EEeeCCCeEEEEEec
Confidence            3467889999998 99999999999998853  233 34689999999999999999998 666  4889999975

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.52  E-value=0.00095  Score=61.44  Aligned_cols=111  Identities=14%  Similarity=0.188  Sum_probs=84.3

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CCcceEEEEeeeccCCCCc
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TDTYLILICTLFTDKNGTT  109 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~~L~L~dt~~~~~~~~~  109 (244)
                      ...+|..+.+|. ..+++.|-.||||.-..+...|| ..|+|..|..+++|.|..-+.+. -+.-+.+||..-      |
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt-YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T------G   91 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT-YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT------G   91 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeecccccceeee-ecCCCceeeeccccccccccccCCCCceEEEEEccc------C
Confidence            477899999997 88899999999999987777785 68999999999999998887433 268899999842      1


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                                  ..-|+++         ||.-....-+||     ....-+..+|.+.-+=.||-+
T Consensus        92 ------------kv~Rr~r---------gH~aqVNtV~fN-----eesSVv~SgsfD~s~r~wDCR  131 (307)
T KOG0316|consen   92 ------------KVDRRFR---------GHLAQVNTVRFN-----EESSVVASGSFDSSVRLWDCR  131 (307)
T ss_pred             ------------eeeeecc---------cccceeeEEEec-----CcceEEEeccccceeEEEEcc
Confidence                        1334444         544334456898     224566677889999999965

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.52  E-value=0.0008  Score=65.85  Aligned_cols=131  Identities=15%  Similarity=0.302  Sum_probs=98.8

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT  109 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~  109 (244)
                      ...|+|.+++|. ||+|..|-.|-+||..+..-.+ .+++|-++|.+++|=..-.-+.++| +.++.+|+...       
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-------  275 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-------  275 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccchhh-cccccccceeeeeeecCccceeeeecCCceEEEehhH-------
Confidence            478999999998 9999999999999999887556 5899999999999985555555565 67899998643       


Q ss_pred             ccccccc---------------------cCCCCCcceeeeeCccch--hhcCCccceeeeeeeeecCCCCcceEEEEeeC
Q 044877          110 KTGFNGR---------------------MGNKIAAPRLLKLTPLDS--HLAGVNNKFHKAQFSWVTENGKQERHLVATVG  166 (244)
Q Consensus       110 ~~GF~~~---------------------~~~~kp~pr~L~L~Pe~~--~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG  166 (244)
                       ++|...                     .|.+--.-|+-+| ||..  .|.|+.-++....|=      ..|..+++|..
T Consensus       276 -~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~I------n~~HfvsGSdn  347 (479)
T KOG0299|consen  276 -LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFI------NDEHFVSGSDN  347 (479)
T ss_pred             -hHHHHHHhCCccceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEe------cccceeeccCC
Confidence             222221                     1222234566676 7775  455666788888885      16999999999


Q ss_pred             CeEEEEechhhh
Q 044877          167 KFSVIWNFQQVK  178 (244)
Q Consensus       167 ~fvvvWn~~kV~  178 (244)
                      .-+..|++.+-+
T Consensus       348 G~IaLWs~~KKk  359 (479)
T KOG0299|consen  348 GSIALWSLLKKK  359 (479)
T ss_pred             ceEEEeeecccC
Confidence            999999997643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.00021  Score=68.78  Aligned_cols=82  Identities=15%  Similarity=0.278  Sum_probs=66.0

Q ss_pred             ceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cce
Q 044877           18 VLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYL   95 (244)
Q Consensus        18 ~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L   95 (244)
                      +|.|.+.  -++++-.+|++.+++|. +|+|+.||.|-+|+...+++.+..=..|+--||+|.|+||.++++.++. +..
T Consensus       271 ~l~~~~~--~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~  348 (398)
T KOG0771|consen  271 FLRLRKK--IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEA  348 (398)
T ss_pred             ccchhhh--hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCce
Confidence            4444443  45566799999999999 9999999999999999888777433468889999999999999998874 667


Q ss_pred             EEEEee
Q 044877           96 ILICTL  101 (244)
Q Consensus        96 ~L~dt~  101 (244)
                      .+.-..
T Consensus       349 ~v~~l~  354 (398)
T KOG0771|consen  349 AVTKLA  354 (398)
T ss_pred             eEEEEe
Confidence            775543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=97.49  E-value=0.0005  Score=64.87  Aligned_cols=114  Identities=18%  Similarity=0.250  Sum_probs=76.7

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe--CCcceEEEEeeeccCCCCcccccccccCCCC
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT--TDTYLILICTLFTDKNGTTKTGFNGRMGNKI  121 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT--~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~k  121 (244)
                      ||+|..+=.|||.|...+...- .|.||-+-|.+|+.||-..|||||  |+..++|||.+--       +|=-.-|....
T Consensus       161 iA~gtr~~~VrLCDi~SGs~sH-~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra-------sgcf~~lD~hn  232 (397)
T KOG4283|consen  161 IAAGTRDVQVRLCDIASGSFSH-TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA-------SGCFRVLDQHN  232 (397)
T ss_pred             EEEecCCCcEEEEeccCCccee-eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc-------cceeEEeeccc
Confidence            9999999999999999887666 589999999999999999999988  5799999998631       12222333111


Q ss_pred             -CcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          122 -AAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       122 -p~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                       ..|-.|+-+|.|-      -+|..+-|.   .+  +.......++.-.-+||.++
T Consensus       233 ~k~~p~~~~n~ah~------gkvngla~t---Sd--~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  233 TKRPPILKTNTAHY------GKVNGLAWT---SD--ARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             CccCcccccccccc------ceeeeeeec---cc--chhhhhccCccceEEeeccc
Confidence             1222334333322      233344443   12  34555556777778888765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.48  E-value=0.00072  Score=71.09  Aligned_cols=112  Identities=17%  Similarity=0.263  Sum_probs=79.6

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccc------cc-----------cceecCCCCCCCeeEEEeCCCCCEEEEeC-Cc
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNS------MR-----------QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DT   93 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~------~r-----------~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~   93 (244)
                      .+||-++++|. +|+||.|..|-+|+...      ..           +....|-+|-..|..|..|||+.|+++-+ ++
T Consensus        72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn  151 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN  151 (942)
T ss_pred             eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence            68999999998 99999999999999861      10           24446788999999999999999998776 68


Q ss_pred             ceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877           94 YLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus        94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      ++.||+.+-          |+           +++.---|..+. +.+.|.|+          +....+.|.++-+.+|.
T Consensus       152 sViiwn~~t----------F~-----------~~~vl~~H~s~V-KGvs~DP~----------Gky~ASqsdDrtikvwr  199 (942)
T KOG0973|consen  152 SVIIWNAKT----------FE-----------LLKVLRGHQSLV-KGVSWDPI----------GKYFASQSDDRTLKVWR  199 (942)
T ss_pred             eEEEEcccc----------ce-----------eeeeeecccccc-cceEECCc----------cCeeeeecCCceEEEEE
Confidence            999999752          53           233111111111 12334442          45666778888999998


Q ss_pred             chh
Q 044877          174 FQQ  176 (244)
Q Consensus       174 ~~k  176 (244)
                      ..+
T Consensus       200 t~d  202 (942)
T KOG0973|consen  200 TSD  202 (942)
T ss_pred             ccc
Confidence            443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=97.45  E-value=0.00021  Score=67.39  Aligned_cols=71  Identities=20%  Similarity=0.222  Sum_probs=54.2

Q ss_pred             CceeEEEecCCCc--EEEeCCCCcEEEEecccc----c-----cce-----ecCCCCCCCeeEEEeCCCCCEEE-EeCCc
Q 044877           31 TNFQCFASTGDGS--IVVGSLDGKIRLYSSNSM----R-----QAK-----TAFPGLGSPIRYVDVTYDGRWIL-GTTDT   93 (244)
Q Consensus        31 ~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~----r-----~aK-----t~lpglGdPI~~vdvS~DG~~lL-aT~~~   93 (244)
                      ..+.+|..+|.-.  +|+||.||.|||||.+.-    +     +.|     .+=+.+-..+-++++|.||++++ +++++
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            4578999999654  899999999999998521    0     111     01245567889999999999997 56689


Q ss_pred             ceEEEEee
Q 044877           94 YLILICTL  101 (244)
Q Consensus        94 ~L~L~dt~  101 (244)
                      .+++|+..
T Consensus       269 r~r~wn~~  276 (397)
T KOG4283|consen  269 RIRVWNME  276 (397)
T ss_pred             ceEEeecc
Confidence            99999974

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.44  E-value=0.0007  Score=69.44  Aligned_cols=124  Identities=16%  Similarity=0.188  Sum_probs=87.8

Q ss_pred             eecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccc--------------------------------cc---
Q 044877           19 LNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS--------------------------------MR---   62 (244)
Q Consensus        19 ~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~--------------------------------~r---   62 (244)
                      +...|.-+-+.+.-+.|+-++++|. +|+|+.||.||+|-...                                ..   
T Consensus       256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            3444444446677799999999998 99999999999998754                                00   


Q ss_pred             ----------cc--------------eecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccccccccc
Q 044877           63 ----------QA--------------KTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRM  117 (244)
Q Consensus        63 ----------~a--------------Kt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~  117 (244)
                                .+              -..+-||-+.|..|..|.++ +||+.+ +.++|||+..-               
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~---------------  399 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR---------------  399 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC---------------
Confidence                      00              01133666788888888886 555666 59999999632               


Q ss_pred             CCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          118 GNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       118 ~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                            ..+|+      .+. |+-=-|+..|+.+  +  ....|.+|-+.-+=+|+..
T Consensus       400 ------~~CL~------~F~-HndfVTcVaFnPv--D--DryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  400 ------KECLK------VFS-HNDFVTCVAFNPV--D--DRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             ------cceee------EEe-cCCeeEEEEeccc--C--CCcEeecccccceEEeecC
Confidence                  23566      333 4444588899943  3  6899999999999999764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.44  E-value=0.00031  Score=66.54  Aligned_cols=67  Identities=18%  Similarity=0.267  Sum_probs=51.9

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      .-.++++++|. +++.+.||.|.++|..+.+..++ ++ .|..-.+|++|+||+||+++|  .+.+.++|+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~-i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT-IK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-EE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-Ee-cCCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            34577899997 88899999999999998887775 45 676778999999999999887  4789999963

...

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=97.43  E-value=0.00076  Score=65.04  Aligned_cols=71  Identities=10%  Similarity=0.210  Sum_probs=55.5

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccc--eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeee
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQA--KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLF  102 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~a--Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~  102 (244)
                      ++..+..+..-. ||+|+.||.+++||++..+-.  --.+..|.+||++|..+|...-+++.+  ++.|-|||...
T Consensus       304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            455666776544 999999999999999865422  123567999999999998887777654  68899999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.00069  Score=71.00  Aligned_cols=111  Identities=20%  Similarity=0.207  Sum_probs=85.0

Q ss_pred             eeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcc
Q 044877           33 FQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTK  110 (244)
Q Consensus        33 Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~  110 (244)
                      .-.++++|.- .|.++-..|.|+|||-+.+...- -++.|-.||.+|+|.|++-..++.-++| |++|+..         
T Consensus        12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~-rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk---------   81 (1202)
T KOG0292|consen   12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID-RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK---------   81 (1202)
T ss_pred             ccceecCCCCCEEEEeecCceeeeehhhhhhHHh-hhhccCCccceeeecCCCCeEEecCCccEEEEEecc---------
Confidence            5688999963 49999999999999997654332 4677899999999999999999999988 9999963         


Q ss_pred             cccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          111 TGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                  .-|+|-      ++.||----..--|..     .-.=+|++|-+.-+-+||.+.
T Consensus        82 ------------~rrclf------tL~GHlDYVRt~~FHh-----eyPWIlSASDDQTIrIWNwqs  124 (1202)
T KOG0292|consen   82 ------------TRRCLF------TLLGHLDYVRTVFFHH-----EYPWILSASDDQTIRIWNWQS  124 (1202)
T ss_pred             ------------cceehh------hhccccceeEEeeccC-----CCceEEEccCCCeEEEEeccC
Confidence                        235555      6777742222235552     145678899999999999874

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.41  E-value=0.0015  Score=60.43  Aligned_cols=74  Identities=19%  Similarity=0.387  Sum_probs=54.3

Q ss_pred             ccCCCCc-eeEEEe-cCCCcEEEeCCCCcEEEEeccccccceecC---------CCCCCCeeEEEeCCCCCEEEEeCCcc
Q 044877           26 QFSRGTN-FQCFAS-TGDGSIVVGSLDGKIRLYSSNSMRQAKTAF---------PGLGSPIRYVDVTYDGRWILGTTDTY   94 (244)
Q Consensus        26 ~Y~~~~~-Ft~vat-s~~G~IavGS~dG~IRLyD~~~~r~aKt~l---------pglGdPI~~vdvS~DG~~lLaT~~~~   94 (244)
                      .|...++ .-||+. +.+|+|.+|++||.+|+||.++.++.++.-         |.-|.=|-.+++  |..|++|.--..
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~  228 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK  228 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc
Confidence            4555555 457776 679999999999999999999887655422         334444555554  667999888788


Q ss_pred             eEEEEee
Q 044877           95 LILICTL  101 (244)
Q Consensus        95 L~L~dt~  101 (244)
                      |-||+..
T Consensus       229 lslwhLr  235 (325)
T KOG0649|consen  229 LSLWHLR  235 (325)
T ss_pred             eeEEecc
Confidence            9999964

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.41  E-value=0.00024  Score=44.76  Aligned_cols=29  Identities=31%  Similarity=0.604  Sum_probs=25.9

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEe
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYS   57 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD   57 (244)
                      -....++++.+|++. ||+||.||.||+||
T Consensus        10 h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   10 HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            345689999999977 99999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.00017  Score=73.80  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      -|...-++-|+.++.+-. |++|+.+|.||+||+...+..+| |-||-++|++|++.|=|.|....+ ++-+.+||.+.+
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt-Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT-LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh-hhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence            456667788999999644 99999999999999976554454 678999999999999999997666 466999998732


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccc
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLD  133 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~  133 (244)
                              |-..+++.-...-+.|+|.|-.
T Consensus       145 --------Gc~~~~~s~~~vv~~l~lsP~G  166 (825)
T KOG0267|consen  145 --------GCSHTYKSHTRVVDVLRLSPDG  166 (825)
T ss_pred             --------CceeeecCCcceeEEEeecCCC
Confidence                    2333333222345677777765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.31  E-value=0.011  Score=49.55  Aligned_cols=73  Identities=19%  Similarity=0.298  Sum_probs=55.6

Q ss_pred             CCCceeEEEecCCCc-EEEe-CCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           29 RGTNFQCFASTGDGS-IVVG-SLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavG-S~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      .....++++.+++|. ++++ +.||.|++||...+....+.+.++.+.. -..+++++.++++.+ +..+++||...
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence            356699999999986 5555 9999999999875544443577787775 348999997777555 47799999853

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=97.29  E-value=0.0049  Score=56.74  Aligned_cols=135  Identities=18%  Similarity=0.220  Sum_probs=86.4

Q ss_pred             CCc-EEEeCCCCcEEEEeccccccceec---CCCCC---CCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccc
Q 044877           41 DGS-IVVGSLDGKIRLYSSNSMRQAKTA---FPGLG---SPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTG  112 (244)
Q Consensus        41 ~G~-IavGS~dG~IRLyD~~~~r~aKt~---lpglG---dPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~G  112 (244)
                      +|. +|+||.|-.||.||++-.-+..|+   +.+-|   ..|.+|+|-|.|+.|++.- ++.-+|+|.+           
T Consensus       193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-----------  261 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-----------  261 (350)
T ss_pred             cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-----------
Confidence            455 899999999999999754444432   23344   7899999999999887664 5779999974           


Q ss_pred             cccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCc
Q 044877          113 FNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLK  192 (244)
Q Consensus       113 F~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~  192 (244)
                                ..|.+|      .+.-+.......+|+  ++   .-..+..|-+.-+-+=|++-=+.-++.         
T Consensus       262 ----------g~r~iq------~f~phsadir~vrfs--p~---a~yllt~syd~~ikltdlqgdla~el~---------  311 (350)
T KOG0641|consen  262 ----------GGRMIQ------RFHPHSADIRCVRFS--PG---AHYLLTCSYDMKIKLTDLQGDLAHELP---------  311 (350)
T ss_pred             ----------CCceee------eeCCCccceeEEEeC--CC---ceEEEEecccceEEEeecccchhhcCc---------
Confidence                      224444      343344445566887  32   466777777777777776655544443         


Q ss_pred             eeeeeEEEecCccccccceecCccccC
Q 044877          193 SCYCYKIVLKDDSIVDSRFMHDKFAVS  219 (244)
Q Consensus       193 ~~~~Y~i~~~~e~iv~~~f~~d~f~~~  219 (244)
                         ...+.--.+.++.-+.-..+|.|=
T Consensus       312 ---~~vv~ehkdk~i~~rwh~~d~sfi  335 (350)
T KOG0641|consen  312 ---IMVVAEHKDKAIQCRWHPQDFSFI  335 (350)
T ss_pred             ---eEEEEeccCceEEEEecCccceee
Confidence               122233334455555556666663

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.29  E-value=0.00049  Score=70.78  Aligned_cols=74  Identities=16%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEeC----CcceEEEEee
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGTT----DTYLILICTL  101 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT~----~~~L~L~dt~  101 (244)
                      +-+-+..|+..+|++. ||+|+.|+.||+||..+.+ ++. +--.-+.|+.-|.+=|+-++.||||    ++.|.+||.+
T Consensus       218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~-~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR-AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             cccCceEEEeecCCCceeeecCCCccEEEEeccCCC-ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            5566789999999876 9999999999999997654 431 1124689999999999999999999    2559999986


Q ss_pred             e
Q 044877          102 F  102 (244)
Q Consensus       102 ~  102 (244)
                      -
T Consensus       297 R  297 (839)
T KOG0269|consen  297 R  297 (839)
T ss_pred             c
Confidence            3

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.0017  Score=64.91  Aligned_cols=75  Identities=15%  Similarity=0.221  Sum_probs=61.4

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEecc---------ccccceecCCCCCCCeeEEEeCCCCCEEEEe-CCcce
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSN---------SMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TDTYL   95 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~---------~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~~L   95 (244)
                      |+-.-++-||+..++|+ +++|+.||.||+|...         ......+.|-|+.|.|..+..|+.-..||+. ++.++
T Consensus       341 raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTv  420 (577)
T KOG0642|consen  341 RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTV  420 (577)
T ss_pred             ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceE
Confidence            45567899999999998 9999999999999332         1224556788999999999999888888754 47999


Q ss_pred             EEEEee
Q 044877           96 ILICTL  101 (244)
Q Consensus        96 ~L~dt~  101 (244)
                      ++|+..
T Consensus       421 r~w~~~  426 (577)
T KOG0642|consen  421 RLWEPT  426 (577)
T ss_pred             EeeccC
Confidence            999975

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=7.3e-05  Score=74.52  Aligned_cols=42  Identities=26%  Similarity=0.372  Sum_probs=37.9

Q ss_pred             eeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCceeeeeecc
Q 044877          193 SCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISS  241 (244)
Q Consensus       193 ~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~  241 (244)
                      .-|||+|++|...++     +|||.||++  +.||||+|+||.+++.++
T Consensus       579 ~~~~Yri~r~~~~v~-----adnf~fg~d--s~Viv~l~dDv~~v~~~s  620 (644)
T KOG2395|consen  579 KHYSYRIRRYLALVV-----ADNFEFGED--SIVIVALPDDVFKVSVRS  620 (644)
T ss_pred             Ccchhhhhhhcccee-----EeeEEecCC--ceEEEecccchhhhcccc
Confidence            357899999999988     999999985  899999999999999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.25  E-value=0.00095  Score=68.76  Aligned_cols=116  Identities=20%  Similarity=0.254  Sum_probs=76.8

Q ss_pred             eeEEEecC-CC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC-CCEEEEeCC-cceEEEEeeeccCCCC
Q 044877           33 FQCFASTG-DG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD-GRWILGTTD-TYLILICTLFTDKNGT  108 (244)
Q Consensus        33 Ft~vats~-~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D-G~~lLaT~~-~~L~L~dt~~~~~~~~  108 (244)
                      ..++.+++ +- .|++||.||.|++||.+..+ .+.++-+-.+.|..|.++|- +....++.+ .+|+|||.+..+    
T Consensus       136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----  210 (839)
T KOG0269|consen  136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----  210 (839)
T ss_pred             eeeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch----
Confidence            34555555 22 48999999999999998654 44456677889999999954 555556666 779999987532    


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG  180 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g  180 (244)
                                     --.+||     +...+++    -..||.+   ..+-+..+.-++.+-+||+-.=+.+
T Consensus       211 ---------------r~~~k~-----~AH~GpV----~c~nwhP---nr~~lATGGRDK~vkiWd~t~~~~~  255 (839)
T KOG0269|consen  211 ---------------RCEKKL-----TAHNGPV----LCLNWHP---NREWLATGGRDKMVKIWDMTDSRAK  255 (839)
T ss_pred             ---------------hHHHHh-----hcccCce----EEEeecC---CCceeeecCCCccEEEEeccCCCcc
Confidence                           111110     1111222    3678875   2566777777899999999854433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=97.20  E-value=0.0035  Score=64.09  Aligned_cols=102  Identities=23%  Similarity=0.237  Sum_probs=78.0

Q ss_pred             ceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCccc
Q 044877           32 NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        32 ~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~  111 (244)
                      ...+|++=+++.+++||.|-.||||-.  ++..+| |.||-|-|.++++-+++.+|=|.-+..|++|+.           
T Consensus       142 sVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~t-f~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-----------  207 (745)
T KOG0301|consen  142 SVWAVASLPENTYVTGSADKTIKLWKG--GTLLKT-FSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-----------  207 (745)
T ss_pred             heeeeeecCCCcEEeccCcceeeeccC--Cchhhh-hccchhheeeeEEecCCCeEeecCCceEEEEec-----------
Confidence            378899999989999999999999997  788885 788999999999999999987777899999993           


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEE
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSV  170 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvv  170 (244)
                                 ..-+|.      .+.||. +|..   +.. . --....||++...--+
T Consensus       208 -----------~ge~l~------~~~ght-n~vY---sis-~-~~~~~~Ivs~gEDrtl  243 (745)
T KOG0301|consen  208 -----------DGEVLL------EMHGHT-NFVY---SIS-M-ALSDGLIVSTGEDRTL  243 (745)
T ss_pred             -----------cCceee------eeeccc-eEEE---EEE-e-cCCCCeEEEecCCceE
Confidence                       677777      555554 4443   321 1 2366666666654443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=97.20  E-value=0.0023  Score=66.14  Aligned_cols=148  Identities=16%  Similarity=0.243  Sum_probs=111.8

Q ss_pred             cceeeecccCCCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-C
Q 044877            6 GIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-D   83 (244)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-D   83 (244)
                      |--|-|..+++|...-+.-..|..++-|.|++.+|+|+ +|+|.--|.||+||+...+ -.++++.|-..|.++..|. +
T Consensus       435 ~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~  513 (1080)
T KOG1408|consen  435 STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPV  513 (1080)
T ss_pred             CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCch
Confidence            34466777888888888888899999999999999998 9999999999999997664 4557899999999999983 3


Q ss_pred             -CCEEEE-eCCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceE
Q 044877           84 -GRWILG-TTDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERH  160 (244)
Q Consensus        84 -G~~lLa-T~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~  160 (244)
                       ++-||| ++++. |.++|+..    +     |.           ++|      ++-||.-+-|.-||--   .|-+-+.
T Consensus       514 ~~~kLLASasrdRlIHV~Dv~r----n-----y~-----------l~q------tld~HSssITsvKFa~---~gln~~M  564 (1080)
T KOG1408|consen  514 LTNKLLASASRDRLIHVYDVKR----N-----YD-----------LVQ------TLDGHSSSITSVKFAC---NGLNRKM  564 (1080)
T ss_pred             hhhHhhhhccCCceEEEEeccc----c-----cc-----------hhh------hhcccccceeEEEEee---cCCceEE
Confidence             444554 45554 88888742    1     33           444      7788888889999973   3336777


Q ss_pred             EEEeeCCeEEEEechhhhcCCcc
Q 044877          161 LVATVGKFSVIWNFQQVKNGSHE  183 (244)
Q Consensus       161 IvtStG~fvvvWn~~kV~~g~~~  183 (244)
                      |..-.++-++.=-++|--.|..-
T Consensus       565 iscGADksimFr~~qk~~~g~~f  587 (1080)
T KOG1408|consen  565 ISCGADKSIMFRVNQKASSGRLF  587 (1080)
T ss_pred             EeccCchhhheehhccccCceec
Confidence            77777777776666665555543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.00093  Score=64.40  Aligned_cols=72  Identities=14%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      -++.+|++.+|+|+ |++|...|.+-.||.++++-....+.|+...|.+|...|.+++|+++. +.|||+.|+.
T Consensus       247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            45689999999998 999999999999999888766766889999999999999999997766 6899999975

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.11  E-value=0.0064  Score=59.93  Aligned_cols=84  Identities=17%  Similarity=0.209  Sum_probs=61.0

Q ss_pred             ceecccccccC----CCCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           18 VLNWSQGHQFS----RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        18 ~~~~~~~k~Y~----~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      .|+..--|+.-    +.-..+||.++|.-. +.|++.||.+|+|-.-+.++-+. .+---+-||....|.|+|+-.++++
T Consensus       197 tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s  276 (514)
T KOG2055|consen  197 TLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS  276 (514)
T ss_pred             eeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec
Confidence            44555445442    334589999999877 89999999999998865443321 2222367999999999999666554


Q ss_pred             --CcceEEEEee
Q 044877           92 --DTYLILICTL  101 (244)
Q Consensus        92 --~~~L~L~dt~  101 (244)
                        +.|+..||..
T Consensus       277 ~rrky~ysyDle  288 (514)
T KOG2055|consen  277 GRRKYLYSYDLE  288 (514)
T ss_pred             ccceEEEEeecc
Confidence              4899999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.10  E-value=0.0006  Score=67.93  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=59.1

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      -.++|.++|.. ..++..||.|++||+......+ .|+|+-|-..+||+|+||.-|-..- ++++|-||.+.
T Consensus       512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr-qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             hhhhhcCCccceeeeeccCCcEEEEEcccceeee-cccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence            34688899988 5677899999999998776666 5899999999999999999998766 69999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=97.10  E-value=0.00095  Score=62.68  Aligned_cols=60  Identities=15%  Similarity=0.275  Sum_probs=52.5

Q ss_pred             CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           31 TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        31 ~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      .|+.+++++| .|.+|+|+.||.|-.||....|+.+ .|++.-..|.+++++-||..|+.++
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~-q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK-QLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhhh-hccCCCCceEEEEeccCCCeEEEEe
Confidence            4678899999 7889999999999999998888777 5777878899999999999997554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.0023  Score=67.85  Aligned_cols=75  Identities=20%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             ccCCCCceeEEEecCCCc-----EEEeCCCCcEEEEecccc--ccc---eecCCCCCCCeeEEEeCCCCCEEEEeCC--c
Q 044877           26 QFSRGTNFQCFASTGDGS-----IVVGSLDGKIRLYSSNSM--RQA---KTAFPGLGSPIRYVDVTYDGRWILGTTD--T   93 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~-----IavGS~dG~IRLyD~~~~--r~a---Kt~lpglGdPI~~vdvS~DG~~lLaT~~--~   93 (244)
                      ...+++.|..++..+.|.     ||.|.+||.|-|||....  ..+   -....-|..+|.++||.+.+.-+||.+.  .
T Consensus        60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g  139 (1049)
T KOG0307|consen   60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG  139 (1049)
T ss_pred             cccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence            346788999999988442     899999999999998642  111   1123567889999999999997777763  5


Q ss_pred             ceEEEEe
Q 044877           94 YLILICT  100 (244)
Q Consensus        94 ~L~L~dt  100 (244)
                      -|.|||.
T Consensus       140 eI~iWDl  146 (1049)
T KOG0307|consen  140 EILIWDL  146 (1049)
T ss_pred             cEEEecc
Confidence            5999996

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.06  E-value=0.0063  Score=61.98  Aligned_cols=115  Identities=15%  Similarity=0.273  Sum_probs=84.3

Q ss_pred             ceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCccc
Q 044877           32 NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        32 ~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~  111 (244)
                      -..++|..+.|.+.+.+.+|.|-=||..++++-+ .++..|.+|-+|++.|-+.-++..|++. .|++-.+    +.++.
T Consensus        71 sIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~-~~d~~gg~IWsiai~p~~~~l~IgcddG-vl~~~s~----~p~~I  144 (691)
T KOG2048|consen   71 SIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY-NIDSNGGAIWSIAINPENTILAIGCDDG-VLYDFSI----GPDKI  144 (691)
T ss_pred             ceeeEEEccCCeEEeecCCceEEEEecccCceeE-EecCCCcceeEEEeCCccceEEeecCCc-eEEEEec----CCceE
Confidence            3789999999999999999999999999887555 5788999999999999999999999877 4445443    23345


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      =|.+.|+..  ..|.|.|                 .|+  +   ..-+++.+|.|.-+.+||.++
T Consensus       145 ~~~r~l~rq--~sRvLsl-----------------sw~--~---~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  145 TYKRSLMRQ--KSRVLSL-----------------SWN--P---TGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             EEEeecccc--cceEEEE-----------------Eec--C---CccEEEecccCceEEEEEcCC
Confidence            577766533  3455552                 222  1   134566677777777777654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.04  E-value=0.0024  Score=63.95  Aligned_cols=71  Identities=17%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      -+.+..|.|.+|+.. +++|..||.|+|||...+ .+  .+-...-..+.|+..|||..+++.+. .-|.+||.-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-VT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCC-ee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            345678899999766 999999999999998432 12  22345567899999999999998776 6699999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.01  E-value=0.015  Score=52.54  Aligned_cols=68  Identities=10%  Similarity=0.041  Sum_probs=47.9

Q ss_pred             eeEEEecCCCc-EEEeC-CCCcEEEEeccc-cccc--eecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGS-LDGKIRLYSSNS-MRQA--KTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS-~dG~IRLyD~~~-~r~a--Kt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~  101 (244)
                      -..++++++|. |++++ .+|.|.+||... +...  ...+++. ....+++++|||+++++++.  +.|.+||..
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            35799999998 66665 489999998842 1111  1123332 34577899999999987773  779999974

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.95  E-value=0.0048  Score=58.86  Aligned_cols=123  Identities=16%  Similarity=0.303  Sum_probs=85.4

Q ss_pred             cCCCCceeEEEecCC--CcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeee
Q 044877           27 FSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLF  102 (244)
Q Consensus        27 Y~~~~~Ft~vats~~--G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~  102 (244)
                      +..+--.+|+|++|.  +..|+||.-..+=||.--+++-.. +|-|++.-|||+.+-+||..+.+.+  +.+|+-||.+.
T Consensus       204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            444555899999993  359999998887777654454344 5679999999999999999999775  58899999863


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                      .     ..           |. ..|.      ...+.  .-..-.|+.   +..+|-...++++.+|-+||+++.-
T Consensus       283 ~-----~~-----------pv-~~L~------rhv~~--TNQRI~FDl---d~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  283 S-----RD-----------PV-YALE------RHVGD--TNQRILFDL---DPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             c-----cc-----------hh-hhhh------hhccC--ccceEEEec---CCCCceeeccCCCccEEEEecCCCC
Confidence            1     00           11 1111      11111  112457773   2346888888899999999999843

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=96.88  E-value=0.0019  Score=64.57  Aligned_cols=79  Identities=20%  Similarity=0.335  Sum_probs=57.5

Q ss_pred             CCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c
Q 044877           16 APVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T   93 (244)
Q Consensus        16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~   93 (244)
                      .||..|.-+..     .....++++||. +|+-|.||.+|+||--++. ..-.+...=.-...|+.|||||||+..-. +
T Consensus       281 NPv~~w~~~~g-----~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDD  354 (636)
T KOG2394|consen  281 NPVARWHIGEG-----SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD  354 (636)
T ss_pred             CccceeEeccc-----cccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence            56777765544     455678999997 9999999999999986553 11111112235789999999999987774 6


Q ss_pred             ceEEEEe
Q 044877           94 YLILICT  100 (244)
Q Consensus        94 ~L~L~dt  100 (244)
                      -+.+|-.
T Consensus       355 LVtVwSf  361 (636)
T KOG2394|consen  355 LVTVWSF  361 (636)
T ss_pred             eEEEEEe
Confidence            6888874

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.87  E-value=0.0082  Score=61.24  Aligned_cols=105  Identities=15%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             CCcEEEEeccc----cccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEeeeccCCCCcccccccccCCCCCc
Q 044877           50 DGKIRLYSSNS----MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTLFTDKNGTTKTGFNGRMGNKIAA  123 (244)
Q Consensus        50 dG~IRLyD~~~----~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~  123 (244)
                      ++.|.+.|..+    .....-.+| .|..--+|++||||+|++++.+  +++-++|+.-.      +--|+.    +   
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~------k~~~~~----~---  360 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL------DDLFDG----K---  360 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh------hhhhhc----c---
Confidence            46799999876    222333456 8999999999999999999985  77999998521      112332    1   


Q ss_pred             ceeeeeCccchhhcCCccceeee--eeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          124 PRLLKLTPLDSHLAGVNNKFHKA--QFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       124 pr~L~L~Pe~~~~~G~~~~Ft~a--kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                           |+|+++...-..+...|.  -|+   +.  +.-...-..++-|+.||+++.+
T Consensus       361 -----~~~~~~vvaevevGlGPLHTaFD---g~--G~aytslf~dsqv~kwn~~~a~  407 (635)
T PRK02888        361 -----IKPRDAVVAEPELGLGPLHTAFD---GR--GNAYTTLFLDSQIVKWNIEAAI  407 (635)
T ss_pred             -----CCccceEEEeeccCCCcceEEEC---CC--CCEEEeEeecceeEEEehHHHH
Confidence                 455554332222333332  443   22  3455556678899999999844

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=96.84  E-value=0.0019  Score=62.76  Aligned_cols=68  Identities=9%  Similarity=0.069  Sum_probs=57.2

Q ss_pred             eeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877           33 FQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        33 Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      .-.|+.+|...  +++++.|..|.+|+.-++. +...|. |-|-|.+++++.||..+++||+ ..||+||.+-
T Consensus       134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             EEEEeecccchhhHhhccCCceEEEEeccCCc-eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            34677888554  8999999999999998886 544566 9999999999999999999996 6799999753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.81  E-value=0.0076  Score=57.57  Aligned_cols=128  Identities=15%  Similarity=0.258  Sum_probs=76.8

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCC--CCC---CeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCC--cccccccc
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPG--LGS---PIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGT--TKTGFNGR  116 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpg--lGd---PI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~--~~~GF~~~  116 (244)
                      +|+.|.+.-|.|||..+++ .|...-+  +-|   .-.++.|||||..|.|.-+.+|+++|+.-. |+-.  ..+-|...
T Consensus       126 ~a~ssr~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~Rp-Gr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRP-GRDCPVYTTVTKGK  203 (406)
T ss_pred             eeeccccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCC-CCCCcchhhhhccc
Confidence            8999999999999999875 2222222  223   335799999999999999999999999321 2110  00001101


Q ss_pred             cCCCCCcceeeeeCccch------------------------hhcCCccceeeeeeeeecCCCCcceEEEEe-eCCeEEE
Q 044877          117 MGNKIAAPRLLKLTPLDS------------------------HLAGVNNKFHKAQFSWVTENGKQERHLVAT-VGKFSVI  171 (244)
Q Consensus       117 ~~~~kp~pr~L~L~Pe~~------------------------~~~G~~~~Ft~akFn~~tg~~~~E~~IvtS-tG~fvvv  171 (244)
                      +|. +-.--.+.++|-+.                        .+-|+.-.-|.-+|-   ++  +++.-+++ .+..+..
T Consensus       204 ~gq-~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~---ed--Gn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  204 FGQ-KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC---ED--GNKLFSGARKDDKILC  277 (406)
T ss_pred             ccc-cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec---cC--cCeecccccCCCeEEE
Confidence            111 11122344555443                        112334444444543   23  46777666 4789999


Q ss_pred             Eechhhhc
Q 044877          172 WNFQQVKN  179 (244)
Q Consensus       172 Wn~~kV~~  179 (244)
                      ||++.+..
T Consensus       278 WDiR~~~~  285 (406)
T KOG2919|consen  278 WDIRYSRD  285 (406)
T ss_pred             Eeehhccc
Confidence            99998763

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=96.72  E-value=0.0034  Score=60.92  Aligned_cols=71  Identities=15%  Similarity=0.204  Sum_probs=59.2

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEecc--------c-----c--ccceecCCCCCCCeeEEEeCCCCCEEEEeC-Ccce
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSN--------S-----M--RQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYL   95 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~--------~-----~--r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L   95 (244)
                      .++|-++++|. +|+|+.+|+|-||-..        +     .  ...+-.+-++++.|..++.+||+.++++.| ++.+
T Consensus        68 VN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~  147 (434)
T KOG1009|consen   68 VNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSV  147 (434)
T ss_pred             eEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceE
Confidence            78999999999 8999999999999764        2     0  112335678999999999999999999999 5889


Q ss_pred             EEEEeeec
Q 044877           96 ILICTLFT  103 (244)
Q Consensus        96 ~L~dt~~~  103 (244)
                      +|||....
T Consensus       148 ~l~Dv~~G  155 (434)
T KOG1009|consen  148 RLWDVHAG  155 (434)
T ss_pred             EEEEeccc
Confidence            99998653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.68  E-value=0.0046  Score=62.36  Aligned_cols=99  Identities=18%  Similarity=0.263  Sum_probs=76.0

Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeee
Q 044877           68 FPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA  146 (244)
Q Consensus        68 lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a  146 (244)
                      |.||-.-|..++.+.||.||++.++++ |.+||.            |+          +    ||-|..-+||..|--++
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~------------~~----------~----KllhsI~TgHtaNIFsv   99 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDP------------FE----------Y----KLLHSISTGHTANIFSV   99 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecc------------hh----------c----ceeeeeecccccceeEE
Confidence            789999999999999999999999855 999995            22          1    22344678888777789


Q ss_pred             eeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCceeee
Q 044877          147 QFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYC  196 (244)
Q Consensus       147 kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~  196 (244)
                      ||-..+   ..+.++.++.+++|.++|+...+.|-.+. .+.+-...|.|
T Consensus       100 KFvP~t---nnriv~sgAgDk~i~lfdl~~~~~~~~d~-~~~~~~~~~~c  145 (758)
T KOG1310|consen  100 KFVPYT---NNRIVLSGAGDKLIKLFDLDSSKEGGMDH-GMEETTRCWSC  145 (758)
T ss_pred             eeeccC---CCeEEEeccCcceEEEEeccccccccccc-Cccchhhhhhh
Confidence            998554   36899999999999999999988776652 23334444444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.018  Score=57.17  Aligned_cols=111  Identities=16%  Similarity=0.215  Sum_probs=85.4

Q ss_pred             eeEEEecC--CCcEEE--eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe---CCcceEEEEeeeccC
Q 044877           33 FQCFASTG--DGSIVV--GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT---TDTYLILICTLFTDK  105 (244)
Q Consensus        33 Ft~vats~--~G~Iav--GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT---~~~~L~L~dt~~~~~  105 (244)
                      +-+++.+|  .|-+|+  |+.|+.||+||..++.+..  ....|.-|.+|..|+..+=|++|   +++-|.||+.     
T Consensus       346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~--~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~-----  418 (484)
T KOG0305|consen  346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID--SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY-----  418 (484)
T ss_pred             eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec--ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec-----
Confidence            56889999  444666  5789999999998775554  35689999999999999999887   3677999995     


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                      |...++.      .++||...  --..+|.+   .+|.+++++.+.-+=.|++-.-
T Consensus       419 ----------------ps~~~~~------~l~gH~~R--Vl~la~SP---dg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  419 ----------------PSMKLVA------ELLGHTSR--VLYLALSP---DGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ----------------cccceee------eecCCcce--eEEEEECC---CCCEEEEecccCcEEeccccCC
Confidence                            3444444      56777653  34667654   2799999999999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.018  Score=57.17  Aligned_cols=122  Identities=12%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             CCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c
Q 044877           16 APVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T   93 (244)
Q Consensus        16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~   93 (244)
                      .+|+..++..    .+..|+|..+++|. ||+|-.+|.|.|||....++..+..-++..-|-+++..  +.-+.+..+ .
T Consensus       207 ~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~  280 (484)
T KOG0305|consen  207 GSVTELCSFG----EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDG  280 (484)
T ss_pred             CceEEeEecC----CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCC
Confidence            3455555553    77799999999998 99999999999999987777775433378888888888  444555565 5


Q ss_pred             ceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877           94 YLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus        94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      .|+.+|.+....-.                 +         .+.||...--.-+++  . +  +....++..++-+.+||
T Consensus       281 ~I~~~dvR~~~~~~-----------------~---------~~~~H~qeVCgLkws--~-d--~~~lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  281 KILNHDVRISQHVV-----------------S---------TLQGHRQEVCGLKWS--P-D--GNQLASGGNDNVVFIWD  329 (484)
T ss_pred             cEEEEEEecchhhh-----------------h---------hhhcccceeeeeEEC--C-C--CCeeccCCCccceEecc
Confidence            58888987532000                 0         123343333333555  2 2  56777888889999999


Q ss_pred             c
Q 044877          174 F  174 (244)
Q Consensus       174 ~  174 (244)
                      .
T Consensus       330 ~  330 (484)
T KOG0305|consen  330 G  330 (484)
T ss_pred             C
Confidence            8

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.62  E-value=0.022  Score=54.28  Aligned_cols=66  Identities=18%  Similarity=0.155  Sum_probs=46.0

Q ss_pred             CceeEEEecCCCc-EEEeCCC---CcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEE
Q 044877           31 TNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILIC   99 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~d   99 (244)
                      ....+.+.+|+|. ||..|.+   ..|++||..+++.. .+.+++   ...++++||||++|+.++  +....||.
T Consensus       204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~  276 (429)
T PRK01742        204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYV  276 (429)
T ss_pred             CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEE
Confidence            4578899999998 8777654   36999999765421 222333   455789999999998765  35555554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.56  E-value=0.012  Score=53.10  Aligned_cols=67  Identities=10%  Similarity=0.057  Sum_probs=48.4

Q ss_pred             eEEEecCCCc-E-EEeCCCCcEEEEeccccccce------ecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877           34 QCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAK------TAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL  101 (244)
Q Consensus        34 t~vats~~G~-I-avGS~dG~IRLyD~~~~r~aK------t~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~  101 (244)
                      .+++++|+|. + ++...++.|++||.......+      ..+| .|....++.++|||+++.+++.  +.|.+||..
T Consensus       129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            4577899987 5 555667999999985421111      0122 4666789999999999987774  789999975

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.54  E-value=0.0024  Score=67.32  Aligned_cols=83  Identities=20%  Similarity=0.312  Sum_probs=67.0

Q ss_pred             CCceecccccccCCCCceeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c
Q 044877           16 APVLNWSQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T   93 (244)
Q Consensus        16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~   93 (244)
                      |-+-+|...++-.  --|||+|++..- +|++|+..|.|++|...++.. ..+...|+.+||.|-.|.||...|..+. +
T Consensus      1089 SRFr~w~~frd~~--~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDET--ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred             hhcccchhhhccc--cceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeecccc
Confidence            6677888877654  559999999954 599999999999999987753 3356789999999999999999985543 3


Q ss_pred             c--eEEEEee
Q 044877           94 Y--LILICTL  101 (244)
Q Consensus        94 ~--L~L~dt~  101 (244)
                      .  -.||+..
T Consensus      1166 ~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1166 SPLSALWDAS 1175 (1516)
T ss_pred             CchHHHhccc
Confidence            3  6799963

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=0.015  Score=62.29  Aligned_cols=121  Identities=20%  Similarity=0.216  Sum_probs=79.8

Q ss_pred             ecccCCCceecccccccCCCCceeEEEecC--CCcEEEeCCCCcEEEEeccccccceecCC-----CCCCCeeEEEeCCC
Q 044877           11 LANAGAPVLNWSQGHQFSRGTNFQCFASTG--DGSIVVGSLDGKIRLYSSNSMRQAKTAFP-----GLGSPIRYVDVTYD   83 (244)
Q Consensus        11 ~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~--~G~IavGS~dG~IRLyD~~~~r~aKt~lp-----glGdPI~~vdvS~D   83 (244)
                      ++..+++|-.|-+...-   .++--+.+-+  .|+|++||.+|+|++||.++. -..+.+.     ..|...|++.+..+
T Consensus      1240 ~a~~ds~v~~~R~h~~~---~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1240 MAPPDSLVCVYREHNDV---EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred             cCCccccceeecccCCc---ccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccceeeeccccCccceeeeeccC
Confidence            34455677777665433   2244455555  446999999999999999762 1122221     13778999999999


Q ss_pred             CCEEEEeCCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhc
Q 044877           84 GRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLA  137 (244)
Q Consensus        84 G~~lLaT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~  137 (244)
                      ..-|.+.+-..|.+|++.- +.=|.-+ =+.+.|+.+++.+-+|..+|-++.+.
T Consensus      1316 apiiAsGs~q~ikIy~~~G-~~l~~~k-~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1316 APIIASGSAQLIKIYSLSG-EQLNIIK-YNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred             CCeeeecCcceEEEEecCh-hhhcccc-cCcccccCcCCCcceeeecchhHhhh
Confidence            9998877778899999752 1111111 02334567888888888888877554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.44  E-value=0.023  Score=60.91  Aligned_cols=127  Identities=13%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             cCCCCceeEEEecC-CCc-EEEeCCCCcEEEEecccccc--ceecCCCCCCC--eeEEEeCCCCCE-EEEeCC-cceEEE
Q 044877           27 FSRGTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQ--AKTAFPGLGSP--IRYVDVTYDGRW-ILGTTD-TYLILI   98 (244)
Q Consensus        27 Y~~~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~--aKt~lpglGdP--I~~vdvS~DG~~-lLaT~~-~~L~L~   98 (244)
                      |.+.+-.|++..+- .|. ||+|-.||.||+||.+.-..  .-.....+.++  |.++.+-+.|-- |++.|. .-|.+|
T Consensus      1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred             cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence            45666677776666 556 99999999999999964221  11122356666  999999987655 778875 669999


Q ss_pred             EeeeccCCCCcccccccccCCCCCcceeeeeCccchh-hcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877           99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSH-LAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus        99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~-~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                      |.+-.         +..         --+.+   ..+ .+|..+   .|-+.+     ..+.+|.+.++.++.+|++..=
T Consensus      1285 DlR~~---------~~e---------~~~~i---v~~~~yGs~l---Tal~VH-----~hapiiAsGs~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1285 DLRMS---------SKE---------TFLTI---VAHWEYGSAL---TALTVH-----EHAPIIASGSAQLIKIYSLSGE 1335 (1387)
T ss_pred             ecccC---------ccc---------cccee---eeccccCccc---eeeeec-----cCCCeeeecCcceEEEEecChh
Confidence            97631         110         00110   001 234333   233332     2567777777799999998765


Q ss_pred             hcCCc
Q 044877          178 KNGSH  182 (244)
Q Consensus       178 ~~g~~  182 (244)
                      +.+..
T Consensus      1336 ~l~~~ 1340 (1387)
T KOG1517|consen 1336 QLNII 1340 (1387)
T ss_pred             hhccc
Confidence            54443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=96.42  E-value=0.032  Score=55.90  Aligned_cols=139  Identities=17%  Similarity=0.241  Sum_probs=91.8

Q ss_pred             ccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           24 GHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        24 ~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      .+++.+ .-.+||++.++|++++|..+|.|-+|+..+-+..|+.. .|..-|-+++.-.||+.|- .- +..|.+||-.+
T Consensus       241 fek~ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y  317 (626)
T KOG2106|consen  241 FEKREK-KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY  317 (626)
T ss_pred             cccccc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence            455655 45799999999999999999999999998777777766 7888999999999999774 55 46699999443


Q ss_pred             ccCCCCcccccccccCCCCCcceeeee-CccchhhcCC----------ccceeeeeee-----ee-cCCCCcceEEEEee
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKL-TPLDSHLAGV----------NNKFHKAQFS-----WV-TENGKQERHLVATV  165 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L-~Pe~~~~~G~----------~~~Ft~akFn-----~~-tg~~~~E~~IvtSt  165 (244)
                      +.-+       +.-+++.+..+|-+.- +|+  .+.|.          ...|+.--|-     |. .--...+..+.++-
T Consensus       318 ~k~r-------~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq  388 (626)
T KOG2106|consen  318 RKLR-------ETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ  388 (626)
T ss_pred             cccc-------cccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC
Confidence            2100       0113344334444332 333  23332          2244433221     11 00123678889999


Q ss_pred             CCeEEEEec
Q 044877          166 GKFSVIWNF  174 (244)
Q Consensus       166 G~fvvvWn~  174 (244)
                      ++.|-+||=
T Consensus       389 dk~v~lW~~  397 (626)
T KOG2106|consen  389 DKHVRLWND  397 (626)
T ss_pred             cceEEEccC
Confidence            999999993

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.38  E-value=0.0077  Score=58.10  Aligned_cols=112  Identities=10%  Similarity=0.106  Sum_probs=82.9

Q ss_pred             eEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877           34 QCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        34 t~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~  111 (244)
                      ..++.+|++. .++|++|-.+-+||.+.....-....+|+..|.+||+||-|+=+++.+ +.+|||+.+.-.  ..    
T Consensus       233 N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~--~S----  306 (433)
T KOG0268|consen  233 NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG--HS----  306 (433)
T ss_pred             cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC--cc----
Confidence            4788899887 899999999999999765545445568999999999999999999887 799999997421  10    


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                          -|+.++.--.+...-+|+.   +  ...+|++|-+..|=.|--..
T Consensus       307 --------------------RdiYhtkRMq~V~~Vk~S~---D--skyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  307 --------------------RDIYHTKRMQHVFCVKYSM---D--SKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             --------------------hhhhhHhhhheeeEEEEec---c--ccEEEecCCCcceeeeecch
Confidence                                0111111112334667772   2  57899999999999997654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.38  E-value=0.011  Score=58.25  Aligned_cols=125  Identities=14%  Similarity=0.165  Sum_probs=90.8

Q ss_pred             ccCCCCceeEEEecC-CC-cEE-EeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           26 QFSRGTNFQCFASTG-DG-SIV-VGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~-~G-~Ia-vGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      +|+.+..+...+++. ++ +++ +-...-.|-+|-.....+-. .-+-+-.||..|.-+|+|.||++.+ ...|-||...
T Consensus        33 ~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels  111 (476)
T KOG0646|consen   33 QYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS  111 (476)
T ss_pred             EecCcccccchhhhhhchhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEec
Confidence            466665666666655 22 544 44456678888874321111 2334556999999999999999997 5779999973


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCC
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGS  181 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~  181 (244)
                                           ..++|.      .+.+|-.+-|+-+|+     +.++..|.+|-+.-|++|.+-.+....
T Consensus       112 ---------------------sG~LL~------v~~aHYQ~ITcL~fs-----~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen  112 ---------------------SGILLN------VLSAHYQSITCLKFS-----DDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             ---------------------cccHHH------HHHhhccceeEEEEe-----CCCcEEEecCCCccEEEEEEEeecccc
Confidence                                 235666      566777888999997     348999999999999999999998776


Q ss_pred             cc
Q 044877          182 HE  183 (244)
Q Consensus       182 ~~  183 (244)
                      .+
T Consensus       160 ~~  161 (476)
T KOG0646|consen  160 ND  161 (476)
T ss_pred             cC
Confidence            65

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=96.32  E-value=0.007  Score=60.57  Aligned_cols=107  Identities=17%  Similarity=0.304  Sum_probs=77.8

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcc
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTK  110 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~  110 (244)
                      -+|+..+.+|+ |-+|+.|+.+|.||.+.+|+...  -.+..-|-++--.|.|.||+.... +++-+..+.         
T Consensus       554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~s---------  622 (705)
T KOG0639|consen  554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS---------  622 (705)
T ss_pred             ceeEEecCCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEecC---------
Confidence            58999999998 99999999999999987765442  257889999999999999998886 558777763         


Q ss_pred             cccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          111 TGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                                  .|.+.||+.       |.-..-.-||..+     +.-++.|--++++=.|..
T Consensus       623 ------------kp~kyqlhl-------heScVLSlKFa~c-----GkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  623 ------------KPEKYQLHL-------HESCVLSLKFAYC-----GKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             ------------Cccceeecc-------cccEEEEEEeccc-----CceeeecCchhhhhhccC
Confidence                        233444332       2222224566643     356677777778777753

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.28  E-value=0.019  Score=56.76  Aligned_cols=73  Identities=8%  Similarity=0.097  Sum_probs=58.9

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEE
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILIC   99 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~d   99 (244)
                      ++-.-..+.++++.+|. |++.+.+|.|-+||.....+..++.+.=+--=++++.|++|.|+++.++.. +-|||
T Consensus       341 ~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  341 FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence            34455678889999998 888899999999999877777766664445668999999999998888865 67777

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.25  E-value=0.034  Score=52.92  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             ceeEEEecCCCc-EEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           32 NFQCFASTGDGS-IVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      ..++.+.+|+|. |+..| .+|..++|+........+.+...+   ....+||||++|+.++...|.+||.
T Consensus       293 ~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~---~~~~~SpDG~~ia~~~~~~i~~~Dl  360 (429)
T PRK01742        293 NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG---YSAQISADGKTLVMINGDNVVKQDL  360 (429)
T ss_pred             CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC---CCccCCCCCCEEEEEcCCCEEEEEC
Confidence            356889999998 66544 689999998632111222333222   4578999999998887777777885

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.014  Score=56.49  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=56.8

Q ss_pred             eeEEEecCC--C-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           33 FQCFASTGD--G-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~--G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ++.+.+-+.  - .+|+++.-|.+|+||.+.+|+--..++-.-.||+++..+|+|++|+++. +.-|-.+|.+
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence            455555553  2 3999999999999999988876656787889999999999999999664 6779999975

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.23  E-value=0.034  Score=53.54  Aligned_cols=103  Identities=12%  Similarity=0.199  Sum_probs=71.9

Q ss_pred             CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cc-eEEEEeeeccCCCCcccccccccCCCCCccee
Q 044877           49 LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRL  126 (244)
Q Consensus        49 ~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~  126 (244)
                      ..|+|.|||..+.+ .-+.++.|..||-.|+|++||..|+.+++ .+ ||++.+.      +|..-|+=           
T Consensus       151 t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~------~G~kl~eF-----------  212 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP------EGQKLYEF-----------  212 (391)
T ss_pred             CCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC------CccEeeee-----------
Confidence            36999999998876 44468999999999999999999977775 44 9999872      22222331           


Q ss_pred             eeeCccchhhcC-CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCcc
Q 044877          127 LKLTPLDSHLAG-VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHE  183 (244)
Q Consensus       127 L~L~Pe~~~~~G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~  183 (244)
                               .-| ...+-..--|+  . +  .....++|.-.-|.+|-++++.....+
T Consensus       213 ---------RRG~~~~~IySL~Fs--~-d--s~~L~~sS~TeTVHiFKL~~~~~~~~~  256 (391)
T KOG2110|consen  213 ---------RRGTYPVSIYSLSFS--P-D--SQFLAASSNTETVHIFKLEKVSNNPPE  256 (391)
T ss_pred             ---------eCCceeeEEEEEEEC--C-C--CCeEEEecCCCeEEEEEecccccCCCC
Confidence                     112 12233344555  2 2  457778888889999999999855443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=96.20  E-value=0.06  Score=50.10  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEe-CCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           31 TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDV-TYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        31 ~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdv-S~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ..+.++-..| ++.|..+.-||.|..||..+++..+ .+.||-|-|-+|.. +.+|+-+ +.. +.++|+||++..  + 
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r-~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~--k-  189 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR-EYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQ--K-  189 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-EEcCCcceeeeeeecccCccee-ecCCCccEEEEecccc--c-
Confidence            3478889997 6678888899999999999998666 57999999999988 7787755 555 688999998631  1 


Q ss_pred             CcccccccccC-CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                           -.+-++ -+  .|-+|+  |.--              .|..-....|.+.|.-.||-+-+|+++.
T Consensus       190 -----~v~~ie~yk--~~~~lR--p~~g--------------~wigala~~edWlvCGgGp~lslwhLrs  236 (325)
T KOG0649|consen  190 -----HVSMIEPYK--NPNLLR--PDWG--------------KWIGALAVNEDWLVCGGGPKLSLWHLRS  236 (325)
T ss_pred             -----eeEEecccc--ChhhcC--cccC--------------ceeEEEeccCceEEecCCCceeEEeccC
Confidence                 111111 11  122333  2111              1111112369999999999999999875

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=96.20  E-value=0.014  Score=60.01  Aligned_cols=71  Identities=11%  Similarity=0.220  Sum_probs=59.0

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      ....|+.+++... |.....-|.+.+||..+++-+- .|-+++|-|.+.+.|-||+.|...|+ .-|+++|-+-
T Consensus       129 ~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~-el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  129 VIVECLRFHPTADGILASGAHGSVYITDISTQKTAV-ELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             eEEEEeecccCcCceEEeccCceEEEEEcccCceee-cccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            4578999999544 7777778999999998876554 57899999999999999999988886 6699999753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.19  E-value=0.021  Score=55.28  Aligned_cols=74  Identities=18%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             cccccCCCCceeEEEecCCCc-EEEeCC-CCcEEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEe-CCcceEEE
Q 044877           23 QGHQFSRGTNFQCFASTGDGS-IVVGSL-DGKIRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGT-TDTYLILI   98 (244)
Q Consensus        23 ~~k~Y~~~~~Ft~vats~~G~-IavGS~-dG~IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT-~~~~L~L~   98 (244)
                      |--+|.-++++|+++..++|. ++++|. |-.|++||.-++  +++-|+..| .-++=+-.||||.|++|+ |+..-+||
T Consensus       188 qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg--~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw  265 (445)
T KOG2139|consen  188 QVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG--QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW  265 (445)
T ss_pred             hheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCC--CcccccccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence            445677889999999999998 677775 456999999776  444555444 357788999999999966 58889999

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.19  E-value=0.015  Score=55.76  Aligned_cols=67  Identities=21%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEe
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICT  100 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt  100 (244)
                      .|++.++-+..|++||.|-.|++||++++|-+--. -....||.-|.+|.-+.-|..--++. ++|+|.
T Consensus       360 VTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  360 VTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             eeEEEEecCCceeecCCCceEEEeeeccccCccee-eecCCccceeEeecCCceEEeccCCceEEEEec
Confidence            78899999888999999999999999888754322 35789999999999888776666766 999996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=96.15  E-value=0.017  Score=59.34  Aligned_cols=137  Identities=18%  Similarity=0.243  Sum_probs=84.5

Q ss_pred             EEEecC-CCc--EEEeCCCCcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCC--EEEEeC--CcceEEEEeeeccCC
Q 044877           35 CFASTG-DGS--IVVGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGR--WILGTT--DTYLILICTLFTDKN  106 (244)
Q Consensus        35 ~vats~-~G~--IavGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~--~lLaT~--~~~L~L~dt~~~~~~  106 (244)
                      |++..+ .+.  +|.|+.+-.|.||.....+.+ ...|.||+|=|.+|++..-|.  .+||++  +.|||||...+.+..
T Consensus       150 cL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~  229 (764)
T KOG1063|consen  150 CLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE  229 (764)
T ss_pred             HHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence            455555 555  799999999999988643322 335789999999999996554  677776  488999999987622


Q ss_pred             CCcccccccccCCCCCccee-----eeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          107 GTTKTGFNGRMGNKIAAPRL-----LKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~-----L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                      .+...-+......+.|.--.     +++.-| .-+|||.-=-..-  .|.+   ..+..+.+|.++-.|+|-=.+.
T Consensus       230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e-all~GHeDWV~sv--~W~p---~~~~LLSASaDksmiiW~pd~~  299 (764)
T KOG1063|consen  230 DSNEREDSLTTLSNLPVFMILEEIQYRISFE-ALLMGHEDWVYSV--WWHP---EGLDLLSASADKSMIIWKPDEN  299 (764)
T ss_pred             cccccccccccccCCceeeeeeeEEEEEehh-hhhcCcccceEEE--EEcc---chhhheecccCcceEEEecCCc
Confidence            22111111111112333222     222222 2356876322222  3432   2588999999999999975544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=96.15  E-value=0.017  Score=57.97  Aligned_cols=123  Identities=15%  Similarity=0.270  Sum_probs=79.1

Q ss_pred             eEEEecC-CCcEEEeCCCCcEEEEeccc--------cccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           34 QCFASTG-DGSIVVGSLDGKIRLYSSNS--------MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        34 t~vats~-~G~IavGS~dG~IRLyD~~~--------~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      ++.++++ .+.|+++|.||.|.||.+..        .+..- .|.+|-.||.+|+++++|+.+.+.. +.+|+.|+.- .
T Consensus       298 r~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~-tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~  375 (577)
T KOG0642|consen  298 RALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL-TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP-P  375 (577)
T ss_pred             hhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeE-EEecccCceEEEEecCCceEEEeeccCceeeeeccC-C
Confidence            3445555 56699999999999999821        11222 4678999999999999999999776 7999999864 2


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~  179 (244)
                      +.+-  -.+|.         |.-|.     -++.|+.-.-----|+     ....+..+.|.+.-|..|+-..+-.
T Consensus       376 n~dp--~ds~d---------p~vl~-----~~l~Ghtdavw~l~~s-----~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  376 NQDP--DDSYD---------PSVLS-----GTLLGHTDAVWLLALS-----STKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             CCCc--ccccC---------cchhc-----cceeccccceeeeeec-----ccccceeeecCCceEEeeccCCcCc
Confidence            2111  01111         22222     0355553211001122     2256688889999999998776654

>smart00320 WD40 WD40 repeats

Probab=96.14  E-value=0.011  Score=33.27  Aligned_cols=28  Identities=29%  Similarity=0.423  Sum_probs=24.0

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEe
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYS   57 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD   57 (244)
                      ...+.+++.++++. +++|+.||.|++||
T Consensus        12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34588999998766 99999999999997

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.12  E-value=0.032  Score=45.42  Aligned_cols=64  Identities=16%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             eeEEEecC---CCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           33 FQCFASTG---DGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        33 Ft~vats~---~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .+|+++..   +|+  +++||.|.+||+|+.-.   ....+. -.+.|+++.....++|.-+....+|-+++-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            45565544   554  99999999999999842   222223 678999999999999887877888988874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=96.12  E-value=0.019  Score=58.49  Aligned_cols=69  Identities=14%  Similarity=0.063  Sum_probs=54.3

Q ss_pred             EEEecC-CCcEEEeCCCCcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeec
Q 044877           35 CFASTG-DGSIVVGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFT  103 (244)
Q Consensus        35 ~vats~-~G~IavGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~  103 (244)
                      -++--+ +-.|++.|-|-.||+||..+.+.. +.++-||--.+.++++.++..-+.||-  +..++|||++..
T Consensus       105 Dl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen  105 DLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             eeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            344445 223999999999999999765433 335668888999999999999999986  577999999863

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.12  E-value=0.024  Score=54.14  Aligned_cols=67  Identities=13%  Similarity=0.172  Sum_probs=53.0

Q ss_pred             eeEEEecCCCc-EEEeCCC----------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCC-EEEEeCC--cceEEE
Q 044877           33 FQCFASTGDGS-IVVGSLD----------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR-WILGTTD--TYLILI   98 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~d----------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~-~lLaT~~--~~L~L~   98 (244)
                      .+-+|.+++|. +++....          +.|-++|..+.+..+. ++ +|.++.+|.+||||+ +|.+|+.  +.|.++
T Consensus       250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~-i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsVi  327 (352)
T TIGR02658       250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK-IE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIF  327 (352)
T ss_pred             ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE-Ee-CCCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence            34599999876 7774322          4799999988876663 55 799999999999999 8888884  669999


Q ss_pred             Eee
Q 044877           99 CTL  101 (244)
Q Consensus        99 dt~  101 (244)
                      |+.
T Consensus       328 D~~  330 (352)
T TIGR02658       328 DAE  330 (352)
T ss_pred             ECc
Confidence            973

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.08  E-value=0.056  Score=51.69  Aligned_cols=56  Identities=18%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL   88 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL   88 (244)
                      -+.+|++.|++|+ +.++|.|..|.|||.+.+...+.  -.+..||.+..+.|-.+-..
T Consensus        66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r--irf~spv~~~q~hp~k~n~~  122 (405)
T KOG1273|consen   66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR--IRFDSPVWGAQWHPRKRNKC  122 (405)
T ss_pred             cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE--EEccCccceeeeccccCCeE
Confidence            3689999999999 99999999999999987765552  25889999999996554443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.06  E-value=0.1  Score=49.63  Aligned_cols=68  Identities=9%  Similarity=-0.021  Sum_probs=49.3

Q ss_pred             CceeEEEecCCCc-EEEeCC---CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cc--eEEEEe
Q 044877           31 TNFQCFASTGDGS-IVVGSL---DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TY--LILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~---dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~--L~L~dt  100 (244)
                      ....+.+.+|+|. ||..+.   +..|.+||..+++ .+ .+..+..++.+.++||||+.|+.++.  ..  |.+||.
T Consensus       202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-RE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-EE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            3577899999998 777654   4689999997764 33 34455668889999999999875542  22  666664

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=96.05  E-value=0.015  Score=55.94  Aligned_cols=119  Identities=12%  Similarity=0.130  Sum_probs=84.0

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc-----cceecCCCCCCCeeEEEeCC-CCCEEEEeCC-cceEEE
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR-----QAKTAFPGLGSPIRYVDVTY-DGRWILGTTD-TYLILI   98 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r-----~aKt~lpglGdPI~~vdvS~-DG~~lLaT~~-~~L~L~   98 (244)
                      |-++-++-+..+...+. +..|...|.|-.+|++...     +|.-  --|+..|+++.+-. ++++|+|..+ ..|.||
T Consensus       249 f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  249 FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--LYHDSSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--EEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence            35666666777777666 7889999999999998653     3321  24889999998887 9999999987 559999


Q ss_pred             EeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeC-CeEEEEech
Q 044877           99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVG-KFSVIWNFQ  175 (244)
Q Consensus        99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG-~fvvvWn~~  175 (244)
                      |.+..           ++       .+-++      .|+||.+.-++.-|.    .+..|.+|++-.+ =|.=+|.++
T Consensus       327 D~R~~-----------K~-------~~~V~------qYeGHvN~~a~l~~~----v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  327 DLRAT-----------KC-------KKSVM------QYEGHVNLSAYLPAH----VKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             eehhh-----------hc-------cccee------eeecccccccccccc----cccccceEEEccCeeEEEEEecc
Confidence            98742           10       11244      789988766666554    2335666666332 366789987

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.04  E-value=0.036  Score=55.15  Aligned_cols=152  Identities=16%  Similarity=0.175  Sum_probs=93.4

Q ss_pred             ccceeeecc-cCCCce-ecccccccCCCCceeEEEecCCC--cEEEeCCCCcEEEEeccccccc------eecCCCC---
Q 044877            5 NGIVQNLAN-AGAPVL-NWSQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQA------KTAFPGL---   71 (244)
Q Consensus         5 ~~~~~~~~~-~~~~~~-~~~~~k~Y~~~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~a------Kt~lpgl---   71 (244)
                      .|+|+++.- ++.|.. -.+..+.........++|.+|..  ..|+|..|--.|+||.+....+      +.++|.+   
T Consensus       254 D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~  333 (559)
T KOG1334|consen  254 DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE  333 (559)
T ss_pred             ccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc
Confidence            467776643 333322 22444444445678899999943  4999999999999999754322      5566643   


Q ss_pred             --CCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccC-CCCCcceeeeeCccchhhcCCccceee--
Q 044877           72 --GSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNKFHK--  145 (244)
Q Consensus        72 --GdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~G~~~~Ft~--  145 (244)
                        ---|+++..|+||.=|||.. +--|-|+.-               .|+ ...|-|--.+=...+.-|.||.++=|-  
T Consensus       334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~---------------~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg  398 (559)
T KOG1334|consen  334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNK---------------SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG  398 (559)
T ss_pred             cCcccceeEEecCCccceeeeecccceEEecc---------------ccccCCCCCCCcchhhccchhhcccccccccce
Confidence              23589999999999999886 455666532               222 111221111100011137787554332  


Q ss_pred             eeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          146 AQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       146 akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      +.|=   | ...|.++.+|--.-+++|+=+
T Consensus       399 VNFf---G-PrsEyVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  399 VNFF---G-PRSEYVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             eeec---c-CccceEEecCccceEEEEecc
Confidence            2442   2 347999999999999999854

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.01  E-value=0.028  Score=55.70  Aligned_cols=138  Identities=20%  Similarity=0.220  Sum_probs=90.8

Q ss_pred             cCCCCceeEEEecC-CCcEEEeCCCCcEEEEeccccc-cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           27 FSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMR-QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        27 Y~~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      +...-....++-+| ++=|=+|...|.|-||.-.... -+|  +--+-.||.+|+|-++|+|.+.|- +..+.+||.+- 
T Consensus       248 ~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~-  324 (545)
T KOG1272|consen  248 RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN-  324 (545)
T ss_pred             HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH--HHhcCCCcceEEECCCCcEEeecccccceeEeeecc-
Confidence            34455566777778 4448999999999999985432 233  234778999999999999997665 47799999752 


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCcc
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHE  183 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~  183 (244)
                               |..      |...          +.  ++.-..--|+       +.-.++.|.|++|-+|-  ..++|...
T Consensus       325 ---------~~q------l~t~----------~t--p~~a~~ls~S-------qkglLA~~~G~~v~iw~--d~~~~s~~  368 (545)
T KOG1272|consen  325 ---------FYQ------LHTY----------RT--PHPASNLSLS-------QKGLLALSYGDHVQIWK--DALKGSGH  368 (545)
T ss_pred             ---------ccc------ccee----------ec--CCCccccccc-------cccceeeecCCeeeeeh--hhhcCCCC
Confidence                     331      1111          11  1100111333       56689999999999993  45554432


Q ss_pred             ccccccCCceeeeeEEEecCcccccccee
Q 044877          184 CYQNQEGLKSCYCYKIVLKDDSIVDSRFM  212 (244)
Q Consensus       184 ~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~  212 (244)
                      +         -.||---+....|.+.+|.
T Consensus       369 ~---------~~pYm~H~~~~~V~~l~Fc  388 (545)
T KOG1272|consen  369 G---------ETPYMNHRCGGPVEDLRFC  388 (545)
T ss_pred             C---------CcchhhhccCcccccceec
Confidence            2         2477777777777777665

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=95.98  E-value=0.029  Score=57.32  Aligned_cols=144  Identities=16%  Similarity=0.095  Sum_probs=92.6

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc-cceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeecc
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR-QAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTD  104 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~  104 (244)
                      .......++|.++.+. +++|+.||.+..++..... .-+..|+.-...|.+|++.|+|..|++.|-++ |++||.+-. 
T Consensus       108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~-  186 (691)
T KOG2048|consen  108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG-  186 (691)
T ss_pred             CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC-
Confidence            4566789999999887 9999999977777775332 34667887889999999999999999999877 999998632 


Q ss_pred             CCCCcccccccccC---CC--CCc--ceeeeeCccchhhcC---Ccccee--------------ee-eeeeecCCCCcce
Q 044877          105 KNGTTKTGFNGRMG---NK--IAA--PRLLKLTPLDSHLAG---VNNKFH--------------KA-QFSWVTENGKQER  159 (244)
Q Consensus       105 ~~~~~~~GF~~~~~---~~--kp~--pr~L~L~Pe~~~~~G---~~~~Ft--------------~a-kFn~~tg~~~~E~  159 (244)
                           ..-.-..|+   -+  +|.  =-.+-|++-.+. .|   +.+.|=              .| -+... -.+++.+
T Consensus       187 -----~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~-sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La-v~~~~d~  259 (691)
T KOG2048|consen  187 -----QTLHIITMQLDRLSKREPTIVWSVLFLRDSTIA-SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA-VADNEDR  259 (691)
T ss_pred             -----ceEEEeeecccccccCCceEEEEEEEeecCcEE-EecCCceEEEEcccCcchhhhhhhhhcceeEEE-EcCCCCe
Confidence                 222322222   11  222  113345554331 11   112221              11 11111 1244678


Q ss_pred             EEEEeeCCeEEEEechhhhc
Q 044877          160 HLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       160 ~IvtStG~fvvvWn~~kV~~  179 (244)
                      +.++..++-++-+.....++
T Consensus       260 vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  260 VFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             EEEccCCCceEEEEecCCcc
Confidence            88888888888888877754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=95.93  E-value=0.067  Score=50.67  Aligned_cols=73  Identities=10%  Similarity=0.070  Sum_probs=57.0

Q ss_pred             CCceeEEEecCCCc--EEEeCCCCcEEEEeccccc---------------------------------------------
Q 044877           30 GTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMR---------------------------------------------   62 (244)
Q Consensus        30 ~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r---------------------------------------------   62 (244)
                      ...+--||+...|.  .|+-+.||.+|+||++...                                             
T Consensus       196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence            34455678888554  8999999999999997422                                             


Q ss_pred             --cceecCCCCCCCeeEEEeCCCCCEEEEeC-Ccc-eEEEEeee
Q 044877           63 --QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTY-LILICTLF  102 (244)
Q Consensus        63 --~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~-L~L~dt~~  102 (244)
                        ..-..|.+|+.+|.+|+.-|-...-|||| +++ .+|||...
T Consensus       276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence              12224778999999999999999999999 555 99999753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.88  E-value=0.012  Score=56.57  Aligned_cols=121  Identities=21%  Similarity=0.201  Sum_probs=76.4

Q ss_pred             eEEEecCCCc--EEEeCCCCcEEEEeccc----ccccee-----------cCCCCCCCeeEEEeCCCCCEEEEeCCcceE
Q 044877           34 QCFASTGDGS--IVVGSLDGKIRLYSSNS----MRQAKT-----------AFPGLGSPIRYVDVTYDGRWILGTTDTYLI   96 (244)
Q Consensus        34 t~vats~~G~--IavGS~dG~IRLyD~~~----~r~aKt-----------~lpglGdPI~~vdvS~DG~~lLaT~~~~L~   96 (244)
                      |+.-++|.-+  ++=.|.+|.|||-|.+.    .+-.|.           ++.+.=..|..|-||++|+|+|+-.-.++.
T Consensus       217 TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk  296 (433)
T KOG1354|consen  217 TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVK  296 (433)
T ss_pred             hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeE
Confidence            4555667544  78889999999999962    112231           122222457888999999999988778899


Q ss_pred             EEEeeeccCCCCcccccccccCCCCCc---ceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877           97 LICTLFTDKNGTTKTGFNGRMGNKIAA---PRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus        97 L~dt~~~~~~~~~~~GF~~~~~~~kp~---pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      |||....                .+|.   |-+-.|+++=-.++-.+--|.+=.++|.   |....+..+|--++.-+++
T Consensus       297 ~wD~nme----------------~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s---g~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  297 LWDLNME----------------AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS---GNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEecccc----------------CCcceEEeehHhHHHHHHHHhhccchhheeEEEEc---CCcceEecccccceEEEec
Confidence            9997431                1122   1111222221123334455666667774   3467888888888888888

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.87  E-value=0.04  Score=55.24  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=82.1

Q ss_pred             EEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCCCccc
Q 044877           36 FASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        36 vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~~~~~  111 (244)
                      +..++.-.  +.++|.+|.|.|||..+++---.++..|..|-.+|+|||-..-|+++-  +..|.+||+.-+        
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~--------  241 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ--------  241 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc--------
Confidence            34455322  789999999999999887655666778999999999999888888774  677999997521        


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG  180 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g  180 (244)
                                ....+|.          -.+-|+.--|.     ..+-...+++.-.-+|.+|++..++-
T Consensus       242 ----------~s~~~l~----------y~~Plstvaf~-----~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  242 ----------ASTDRLT----------YSHPLSTVAFS-----ECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             ----------cccceee----------ecCCcceeeec-----CCceEEEeecCCceEEEEecccCCCC
Confidence                      1223333          13456666776     23678888999999999999876543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=95.79  E-value=0.16  Score=48.44  Aligned_cols=66  Identities=20%  Similarity=0.109  Sum_probs=45.2

Q ss_pred             eeEEEecCCCc-EE-EeCCCCcEEEEec--cccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877           33 FQCFASTGDGS-IV-VGSLDGKIRLYSS--NSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-Ia-vGS~dG~IRLyD~--~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt  100 (244)
                      ..+.+.+|+|. || +.+.+|..+||..  .+.. .+ .|-.....+++.++||||++|+.+++  ....||..
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~  313 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM  313 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence            35789999997 65 5788998777764  3332 33 23333445678899999999997764  45666664

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=95.70  E-value=0.02  Score=53.48  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             CCCCc-eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           28 SRGTN-FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        28 ~~~~~-Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      ..+++ .+-+..-+||. +|+++=||.||+|.=++++ .--.|.-|.+.|.+|++|||...+.++++ ..|-||+.
T Consensus       248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            44555 77888889999 7999999999999998885 44467788999999999999888888885 67999984

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.26  Score=46.98  Aligned_cols=87  Identities=18%  Similarity=0.264  Sum_probs=60.1

Q ss_pred             CCceeccccccc-CCCCceeEEEecC--CCc-EEEeCCCCcEEEEeccccc-----------------------------
Q 044877           16 APVLNWSQGHQF-SRGTNFQCFASTG--DGS-IVVGSLDGKIRLYSSNSMR-----------------------------   62 (244)
Q Consensus        16 ~~~~~~~~~k~Y-~~~~~Ft~vats~--~G~-IavGS~dG~IRLyD~~~~r-----------------------------   62 (244)
                      ++-.+|..-..- -++...+-|.+.|  -|. +|+.+.||.+|+|+....-                             
T Consensus        97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs  176 (361)
T KOG2445|consen   97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS  176 (361)
T ss_pred             cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence            334455444333 3455678888888  565 8999999999999985210                             


Q ss_pred             -------------------------------------cceecCCCCCCCeeEEEeCCC-CC--EEEEe-CCcceEEEEee
Q 044877           63 -------------------------------------QAKTAFPGLGSPIRYVDVTYD-GR--WILGT-TDTYLILICTL  101 (244)
Q Consensus        63 -------------------------------------~aKt~lpglGdPI~~vdvS~D-G~--~lLaT-~~~~L~L~dt~  101 (244)
                                                           ..-..||+++|||+.|++.|+ |+  ++||+ |.+.|+||...
T Consensus       177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~  256 (361)
T KOG2445|consen  177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVK  256 (361)
T ss_pred             eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEe
Confidence                                                 111247899999999999987 33  35544 67779999976


Q ss_pred             e
Q 044877          102 F  102 (244)
Q Consensus       102 ~  102 (244)
                      .
T Consensus       257 ~  257 (361)
T KOG2445|consen  257 V  257 (361)
T ss_pred             e
Confidence            4

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=95.63  E-value=0.043  Score=51.34  Aligned_cols=92  Identities=12%  Similarity=0.028  Sum_probs=63.8

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCC-CCCCeeEEEeCCCCCEEEEeCCcceEEEEeeecc-----CC
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPG-LGSPIRYVDVTYDGRWILGTTDTYLILICTLFTD-----KN  106 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpg-lGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~-----~~  106 (244)
                      .+|+.+.+++++..|+..|.+.+|+..++| .++++.+ .+.+|+++...|+++.+.=.=+-.|.||+.-...     .=
T Consensus        17 v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r-~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si   95 (323)
T KOG0322|consen   17 VTSVLFQANERLMSGLSVGIVKMWVLQTER-DLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSI   95 (323)
T ss_pred             heehhhccchhhhcccccceEEEEEeecCc-cchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeee
Confidence            578888899999999999999999998875 7888885 5689999999998664322223457777653200     00


Q ss_pred             CCcccccccccCCCCCcce
Q 044877          107 GTTKTGFNGRMGNKIAAPR  125 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr  125 (244)
                      --+.+||.++-=-.+|+++
T Consensus        96 ~~nslgFCrfSl~~~~k~~  114 (323)
T KOG0322|consen   96 VVNSLGFCRFSLVKKPKNS  114 (323)
T ss_pred             eccccccccceeccCCCcc
Confidence            1246788864324445554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=95.58  E-value=0.19  Score=47.93  Aligned_cols=69  Identities=12%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC-cceEEEEe
Q 044877           30 GTNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD-TYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~-~~L~L~dt  100 (244)
                      +....+.+.+|+|. ||..+.+   ..|.+||..+++..+  +..+...+.+..+||||++|+.+ +. ....||..
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            44578899999997 7777643   359999997664322  33344456789999999999854 43 44555543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.52  E-value=0.045  Score=54.91  Aligned_cols=72  Identities=21%  Similarity=0.365  Sum_probs=58.2

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC-----CCEEEEeCC--cceEEEEeee
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD-----GRWILGTTD--TYLILICTLF  102 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D-----G~~lLaT~~--~~L~L~dt~~  102 (244)
                      ...++++.+++|. +++||  +.|++||..+.+... .++||+.||..+.|+.+     |+|+|++..  .+|-.|-..-
T Consensus       145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~-~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI-TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CccceEEEcCCCCEEEecc--ceEEEEEccCceEEE-EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            3467899999987 56665  689999999887666 58999999999999999     999998874  6688887654


Q ss_pred             ccC
Q 044877          103 TDK  105 (244)
Q Consensus       103 ~~~  105 (244)
                      .++
T Consensus       222 ~~k  224 (541)
T KOG4547|consen  222 EDK  224 (541)
T ss_pred             ccc
Confidence            333

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.46  E-value=0.054  Score=53.22  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=61.3

Q ss_pred             cccCCCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877           25 HQFSRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICT  100 (244)
Q Consensus        25 k~Y~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt  100 (244)
                      +.++-.-+..-++.++.-.  +.+|+.||.+|-||.|..-+.--.+..|.+||.+|++++.-..+|+|.  +.++.||+.
T Consensus       324 ~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  324 KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence            3444455667788888543  899999999999999865333334678999999999999999999885  588999997


Q ss_pred             ee
Q 044877          101 LF  102 (244)
Q Consensus       101 ~~  102 (244)
                      ..
T Consensus       404 ~~  405 (463)
T KOG0270|consen  404 DV  405 (463)
T ss_pred             cC
Confidence            54

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.39  E-value=0.32  Score=45.80  Aligned_cols=70  Identities=11%  Similarity=0.019  Sum_probs=47.9

Q ss_pred             CCCceeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-c--ceEEEEe
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-T--YLILICT  100 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~--~L~L~dt  100 (244)
                      .+.+..+.+.+|+|. ||..+.+   ..|.+||..+++ .+ .+......+....+||||++|+.+. . .  .|.+||.
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-RE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            345578889999997 7665543   358889987664 23 2344445566789999999998543 2 2  3777775

>PRK03629 tolB translocation protein TolB; Provisional

Probab=95.34  E-value=0.34  Score=46.37  Aligned_cols=68  Identities=10%  Similarity=-0.001  Sum_probs=46.4

Q ss_pred             CceeEEEecCCCc-EEEeC---CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-c--ceEEEEe
Q 044877           31 TNFQCFASTGDGS-IVVGS---LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-T--YLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS---~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~--~L~L~dt  100 (244)
                      ....+.+.+|+|. ||..+   .+..|.+||..+++ .+ .+-.+...+.++.+||||++|+.+. . .  .|.+||.
T Consensus       199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            3577899999997 66543   34579999987664 32 2222333456789999999998653 2 2  3888885

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.32  E-value=0.17  Score=47.27  Aligned_cols=116  Identities=15%  Similarity=0.149  Sum_probs=77.9

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEe--CCcceEEEEeeeccC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGT--TDTYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT--~~~~L~L~dt~~~~~  105 (244)
                      .-+..+||.+.+|. +|.||.|+.+++|.....+..+. -.-|+++.|.-++..|---=+++|  .+..|++||.+..  
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~--   97 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG--   97 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC--
Confidence            34578999999998 99999999999999976665542 335889999999887554444444  4789999997631  


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                                     ||.   .+     +...|+++     .-.|.+   .++.+|++.-+.-+.+.|.++-+
T Consensus        98 ---------------k~~---~~-----i~~~~eni-----~i~wsp---~g~~~~~~~kdD~it~id~r~~~  139 (313)
T KOG1407|consen   98 ---------------KCT---AR-----IETKGENI-----NITWSP---DGEYIAVGNKDDRITFIDARTYK  139 (313)
T ss_pred             ---------------cEE---EE-----eeccCcce-----EEEEcC---CCCEEEEecCcccEEEEEecccc
Confidence                           011   01     01122222     123333   26888888888888887776544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.29  E-value=0.21  Score=47.61  Aligned_cols=68  Identities=13%  Similarity=0.062  Sum_probs=46.9

Q ss_pred             CceeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-c--ceEEEEe
Q 044877           31 TNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-T--YLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~--~L~L~dt  100 (244)
                      ....+.+.+|+|. ||..+.+   ..|.+||..+++..  .+-.+.....++.+||||++|+.+. . .  .|.+||.
T Consensus       204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            3567889999997 8877744   36999999765432  2223333456789999999987543 2 2  3888875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=95.25  E-value=0.051  Score=52.07  Aligned_cols=84  Identities=19%  Similarity=0.277  Sum_probs=64.3

Q ss_pred             CCceecccccccCCCCceeEEEecCCCc-EEEeCC----CCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEE
Q 044877           16 APVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSL----DGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILG   89 (244)
Q Consensus        16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~----dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLa   89 (244)
                      +++..|.|..    .++|.|++....++ |+.|+.    +-.+-|||.+..++ .....+.|.|.||+|.|.|..--+|.
T Consensus       107 ~a~~~~~~~~----~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl  182 (376)
T KOG1188|consen  107 SARISWTQQS----GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL  182 (376)
T ss_pred             hhheeccCCC----CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence            4456665542    78999999997766 788875    55689999986655 45567889999999999987766664


Q ss_pred             e-C-CcceEEEEeeec
Q 044877           90 T-T-DTYLILICTLFT  103 (244)
Q Consensus        90 T-~-~~~L~L~dt~~~  103 (244)
                      + + +.++-|+|+...
T Consensus       183 SGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  183 SGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eecccceEEeeecCCC
Confidence            4 4 788999998753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.25  E-value=0.29  Score=45.23  Aligned_cols=66  Identities=11%  Similarity=0.047  Sum_probs=46.8

Q ss_pred             eeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C---cceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D---TYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~---~~L~L~dt  100 (244)
                      ..+.+.+|+|. ||..+..   ..|++||..+++. + .+..+...+.++.+||||+.|+.+. .   ..|.+||.
T Consensus       192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-E-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-E-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            56778999998 7766544   4799999976642 2 3444666777899999999987553 2   23777774

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=95.13  E-value=0.1  Score=53.11  Aligned_cols=128  Identities=18%  Similarity=0.324  Sum_probs=82.9

Q ss_pred             eeccccc---ccCCC-CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceec--------CCCCC--CCeeEEEeCCC
Q 044877           19 LNWSQGH---QFSRG-TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTA--------FPGLG--SPIRYVDVTYD   83 (244)
Q Consensus        19 ~~~~~~k---~Y~~~-~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~--------lpglG--dPI~~vdvS~D   83 (244)
                      +|+.|+.   -|++. -...+|..++ +|-||+|..+|.+-.||-+....+.++        .|+-.  ..|++|.|+.|
T Consensus       160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~  239 (703)
T KOG2321|consen  160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD  239 (703)
T ss_pred             EEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC
Confidence            5566653   23333 4577888888 777999999999999999865444322        22211  24999999999


Q ss_pred             CCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEE
Q 044877           84 GRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLV  162 (244)
Q Consensus        84 G~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~Iv  162 (244)
                      |-.+.+.+ ..++.|+|.+-.                   .|.+.+         .|...+---+|.|..-  .++..++
T Consensus       240 gL~~aVGts~G~v~iyDLRa~-------------------~pl~~k---------dh~~e~pi~~l~~~~~--~~q~~v~  289 (703)
T KOG2321|consen  240 GLHVAVGTSTGSVLIYDLRAS-------------------KPLLVK---------DHGYELPIKKLDWQDT--DQQNKVV  289 (703)
T ss_pred             ceeEEeeccCCcEEEEEcccC-------------------Cceeec---------ccCCccceeeeccccc--CCCceEE
Confidence            99998776 477999997631                   344444         1222333346676432  2556666


Q ss_pred             EeeCCeEEEEechh
Q 044877          163 ATVGKFSVIWNFQQ  176 (244)
Q Consensus       163 tStG~fvvvWn~~k  176 (244)
                      +.--.-+-+|+-..
T Consensus       290 S~Dk~~~kiWd~~~  303 (703)
T KOG2321|consen  290 SMDKRILKIWDECT  303 (703)
T ss_pred             ecchHHhhhccccc
Confidence            66666677787543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.05  E-value=0.44  Score=45.37  Aligned_cols=57  Identities=21%  Similarity=0.100  Sum_probs=41.5

Q ss_pred             eEEEecCCCc-EE-EeCCCC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877           34 QCFASTGDGS-IV-VGSLDG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        34 t~vats~~G~-Ia-vGS~dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      .+.+.+|+|. |+ +.+.+|  +|.+||..+++ .+ .+........+.++||||++|+.+++
T Consensus       251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~-~lt~~~~~~~~~~~spDG~~l~f~sd  311 (433)
T PRK04922        251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LT-RLTNHFGIDTEPTWAPDGKSIYFTSD  311 (433)
T ss_pred             cCceECCCCCEEEEEEeCCCCceEEEEECCCCC-eE-ECccCCCCccceEECCCCCEEEEEEC
Confidence            4788999997 65 556666  59999987664 33 23334445678899999999998774

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=95.01  E-value=0.18  Score=55.03  Aligned_cols=75  Identities=19%  Similarity=0.283  Sum_probs=55.5

Q ss_pred             cC-CCCceeEEEecCCCc-EEEeCCCCcEEEEeccc--------------------------------------------
Q 044877           27 FS-RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS--------------------------------------------   60 (244)
Q Consensus        27 Y~-~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~--------------------------------------------   60 (244)
                      |. .++.++++..=+.|+ +|+|+.||.|++.+.--                                            
T Consensus      1094 ys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1094 YSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred             EeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc
Confidence            44 677888888888887 89999999998887631                                            


Q ss_pred             ---------ccc---ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           61 ---------MRQ---AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        61 ---------~r~---aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                               ...   .| .-|.+ .-|++++++|-+.|++..+ ...|.|||.+++
T Consensus      1174 ~iv~~D~r~~~~~w~lk-~~~~h-G~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHDAWRLK-NQLRH-GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             ceEEecchhhhhHHhhh-cCccc-cceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence                     001   12 11223 3699999999999999655 677999999864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=94.93  E-value=0.25  Score=47.21  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=82.7

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccc---cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR---QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      -+.+|+|.++++. ||++-...+|-+|...+..   .+.| |..+-.+|++||.+|-..-|+..+ +..--+|... .++
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~ht-ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~~   88 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHT-LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SGG   88 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceecee-hhhhCcceeEEeecCCCCceeEccCCCCccccccC-CCC
Confidence            4689999999998 9999999999999986543   3443 556888999999999998885444 4445566532 111


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                   .=||.+-+|+|+-.        .  +  .-+|.+   .+....|+|+++.+-+|-|++
T Consensus        89 -------------~WkptlvLlRiNrA--------A--t--~V~WsP---~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   89 -------------TWKPTLVLLRINRA--------A--T--CVKWSP---KENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             -------------eeccceeEEEeccc--------e--e--eEeecC---cCceEEeccCccEEEEEEEec
Confidence                         12488888884321        1  1  234543   367788899999999988875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=94.91  E-value=0.1  Score=52.50  Aligned_cols=71  Identities=15%  Similarity=0.164  Sum_probs=59.7

Q ss_pred             CceeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-cceEEEEee
Q 044877           31 TNFQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-TYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~~L~L~dt~  101 (244)
                      ..++||...-.. +||++|.-|+|-+-...+..++.++-.+-|+.+..++.|+-.+++|++. + ..+.|||++
T Consensus       122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~  195 (673)
T KOG4378|consen  122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ  195 (673)
T ss_pred             ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence            458899988844 5999999999999999887666665566788999999999999999775 4 669999985

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=94.91  E-value=0.52  Score=43.57  Aligned_cols=57  Identities=23%  Similarity=0.121  Sum_probs=39.9

Q ss_pred             eEEEecCCCc-EE-EeCCCC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877           34 QCFASTGDGS-IV-VGSLDG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        34 t~vats~~G~-Ia-vGS~dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      .+++++|+|. |+ +.+.+|  .|.+||..++. .+ .+........+.+++|||++|+.++.
T Consensus       237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~-~l~~~~~~~~~~~~s~dg~~l~~~s~  297 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LT-RLTNGPGIDTEPSWSPDGKSIAFTSD  297 (417)
T ss_pred             cceEECCCCCEEEEEECCCCCccEEEEECCCCC-EE-ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence            4678999997 65 556665  48888986553 33 23344555678899999999987664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>smart00320 WD40 WD40 repeats

Probab=94.89  E-value=0.049  Score=30.51  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=26.7

Q ss_pred             CCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEE
Q 044877           68 FPGLGSPIRYVDVTYDGRWILGTTD-TYLILIC   99 (244)
Q Consensus        68 lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~d   99 (244)
                      +..+..+|.++++.+++.++++.+. +.+++||
T Consensus         8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4467789999999999999987774 7799986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=94.85  E-value=0.27  Score=46.71  Aligned_cols=170  Identities=15%  Similarity=0.237  Sum_probs=96.9

Q ss_pred             ccCCCCceeEEEec----CCCcEEEeCCC----CcEEEEec--cccc-cceecCCCCCCCeeEEEeCCCCC----EEEEe
Q 044877           26 QFSRGTNFQCFAST----GDGSIVVGSLD----GKIRLYSS--NSMR-QAKTAFPGLGSPIRYVDVTYDGR----WILGT   90 (244)
Q Consensus        26 ~Y~~~~~Ft~vats----~~G~IavGS~d----G~IRLyD~--~~~r-~aKt~lpglGdPI~~vdvS~DG~----~lLaT   90 (244)
                      .|..--+.-+++.+    ..-+||+||..    +.|-+--.  .++. ..+..++ |--|++-+-+.||.+    -||||
T Consensus        40 ~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd-~~YP~tK~~wiPd~~g~~pdlLAT  118 (364)
T KOG0290|consen   40 TYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFD-HPYPVTKLMWIPDSKGVYPDLLAT  118 (364)
T ss_pred             EecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCC-CCCCccceEecCCccccCcchhhc
Confidence            44555555566666    34459999974    33443322  2221 1222233 778999999999985    47899


Q ss_pred             CCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceee--eeeeeecCCCCcceEEEEeeCCe
Q 044877           91 TDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHK--AQFSWVTENGKQERHLVATVGKF  168 (244)
Q Consensus        91 ~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~--akFn~~tg~~~~E~~IvtStG~f  168 (244)
                      |.++||||.+...+                  .+-+++    -+.-..++-.|--  .-|+|..-+  -..+++.|.+.-
T Consensus       119 s~D~LRlWri~~ee------------------~~~~~~----~~L~~~kns~~~aPlTSFDWne~d--p~~igtSSiDTT  174 (364)
T KOG0290|consen  119 SSDFLRLWRIGDEE------------------SRVELQ----SVLNNNKNSEFCAPLTSFDWNEVD--PNLIGTSSIDTT  174 (364)
T ss_pred             ccCeEEEEeccCcC------------------Cceehh----hhhccCcccccCCcccccccccCC--cceeEeecccCe
Confidence            99999999974311                  111111    1111111112211  279997422  577888889999


Q ss_pred             EEEEechhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCCCCCEE--EEcCCceeeeeecc
Q 044877          169 SVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLV--IATPMKVSSFSISS  241 (244)
Q Consensus       169 vvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~ii--va~~~~v~~~~~~~  241 (244)
                      -.+||++.=..|...             -++-.-+.+|.|-.|-.     |+   .+|.  |.-.-.|.||.++.
T Consensus       175 CTiWdie~~~~~~vk-------------TQLIAHDKEV~DIaf~~-----~s---~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  175 CTIWDIETGVSGTVK-------------TQLIAHDKEVYDIAFLK-----GS---RDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             EEEEEEeecccccee-------------eEEEecCcceeEEEecc-----Cc---cceEEEecCCCcEEEEEecc
Confidence            999999985443332             24555666666554332     11   2322  23345678887754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=94.55  E-value=0.11  Score=52.24  Aligned_cols=64  Identities=19%  Similarity=0.319  Sum_probs=45.1

Q ss_pred             eEEEecCCCcE-EE---eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-EeC------CcceEEEEe
Q 044877           34 QCFASTGDGSI-VV---GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTT------DTYLILICT  100 (244)
Q Consensus        34 t~vats~~G~I-av---GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~------~~~L~L~dt  100 (244)
                      .++-++|.|+| +.   |..-|+|-+||..+.++. ..+...+  -+-.+.+|||+|+| |||      +|.++||+.
T Consensus       315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-AKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             cceEECCCCCEEEEeecCCCCCceEEEeccchhhc-cccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            46778999994 44   567899999999774422 1223222  24469999999999 665      377889985

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=94.55  E-value=0.2  Score=48.32  Aligned_cols=117  Identities=19%  Similarity=0.234  Sum_probs=75.6

Q ss_pred             ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc------------------------------------------
Q 044877           26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR------------------------------------------   62 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r------------------------------------------   62 (244)
                      .|-++.-.-.|+-+|.++ ||+||.||.+|+-.-.+=+                                          
T Consensus       206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence            567777888999999888 9999999999985543211                                          


Q ss_pred             ---------------------cce--ecCCCCCCCeeEEEeCCCCCEEEEeCC---cceEEEEeeeccCCCCcccccccc
Q 044877           63 ---------------------QAK--TAFPGLGSPIRYVDVTYDGRWILGTTD---TYLILICTLFTDKNGTTKTGFNGR  116 (244)
Q Consensus        63 ---------------------~aK--t~lpglGdPI~~vdvS~DG~~lLaT~~---~~L~L~dt~~~~~~~~~~~GF~~~  116 (244)
                                           ..|  |-.|.=.--|--+++|+|..|+..-.+   |-|-|||.+-.             
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-------------  352 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-------------  352 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-------------
Confidence                                 111  112211223455799999999865555   44999997521             


Q ss_pred             cCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          117 MGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       117 ~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                          +-...+.|.         +++    -.|.|.++   ..+.++..++.-++.|...
T Consensus       353 ----~l~avLiQk---------~pi----raf~WdP~---~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  353 ----KLHAVLIQK---------HPI----RAFEWDPG---RPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             ----hhhhhhhhc---------cce----eEEEeCCC---CceEEEEcCCceEEEEcCC
Confidence                001111221         233    36888653   5788888889999999764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=94.46  E-value=0.073  Score=54.08  Aligned_cols=69  Identities=19%  Similarity=0.241  Sum_probs=51.4

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeC-CCCCEEEEeCC-cceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT-YDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS-~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      .|++.++.+|- +++|+..|.|-+||++..+-....-.+-.-||..+++- .|++-.|++|+ ..|+|||-.
T Consensus       231 vTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~  302 (703)
T KOG2321|consen  231 VTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDEC  302 (703)
T ss_pred             ceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccc
Confidence            78999999995 99999999999999965432111112445799999985 35556667776 569999964

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=94.34  E-value=0.18  Score=49.34  Aligned_cols=110  Identities=13%  Similarity=0.057  Sum_probs=76.3

Q ss_pred             eeEEEecC-CCc-EEEeCCCCcEEEEeccccc-------cceecCCCCCCCeeEEEeCCCCCEEE--EeCCcceEEEEee
Q 044877           33 FQCFASTG-DGS-IVVGSLDGKIRLYSSNSMR-------QAKTAFPGLGSPIRYVDVTYDGRWIL--GTTDTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r-------~aKt~lpglGdPI~~vdvS~DG~~lL--aT~~~~L~L~dt~  101 (244)
                      ..-++..| +.+ ||+||.|-+|.+|+..-.-       -.+ .|-||.-.|-.|...|-..-||  |.|++.+.||+.-
T Consensus        84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv-~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~  162 (472)
T KOG0303|consen   84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVV-ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG  162 (472)
T ss_pred             ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceE-EEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence            34455666 334 9999999999999985211       122 3456677777788888887777  4578999999973


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .    |+                -++.|+        |+---....||+.     +.....|+-++-|=+||-++
T Consensus       163 t----ge----------------ali~l~--------hpd~i~S~sfn~d-----Gs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  163 T----GE----------------ALITLD--------HPDMVYSMSFNRD-----GSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             C----Cc----------------eeeecC--------CCCeEEEEEeccC-----CceeeeecccceeEEEcCCC
Confidence            2    21                233322        4544567788852     57889999999999999765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=94.27  E-value=0.54  Score=46.06  Aligned_cols=128  Identities=12%  Similarity=0.121  Sum_probs=79.2

Q ss_pred             CCCceeEEEecCCC--cEEEeCCCCcEEEEeccccccce--------ecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEE
Q 044877           29 RGTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQAK--------TAFPGLGSPIRYVDVTYDGRWILGTTD-TYLIL   97 (244)
Q Consensus        29 ~~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~aK--------t~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L   97 (244)
                      ...+..++.+.+++  .+|+|+.|-+||+|-.......+        ..|-+|+-.|..|.++|+|..|.+..+ ..+.|
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            45677788888844  49999999999999875322111        245678899999999999998765556 55999


Q ss_pred             EEee---eccCCCCcccccccccC-CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877           98 ICTL---FTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus        98 ~dt~---~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      |-..   +.         +...-. ..|+.=...+      ..-|+.  =+.-.-.|.+   ...-.+++|.++-++.||
T Consensus        92 Wk~~~~~~~---------~~d~e~~~~ke~w~v~k------~lr~h~--~diydL~Ws~---d~~~l~s~s~dns~~l~D  151 (434)
T KOG1009|consen   92 WKQGDVRIF---------DADTEADLNKEKWVVKK------VLRGHR--DDIYDLAWSP---DSNFLVSGSVDNSVRLWD  151 (434)
T ss_pred             EEecCcCCc---------cccchhhhCccceEEEE------Eecccc--cchhhhhccC---CCceeeeeeccceEEEEE
Confidence            9753   21         111100 0111111111      111211  0111334543   257889999999999999


Q ss_pred             chh
Q 044877          174 FQQ  176 (244)
Q Consensus       174 ~~k  176 (244)
                      +.+
T Consensus       152 v~~  154 (434)
T KOG1009|consen  152 VHA  154 (434)
T ss_pred             ecc
Confidence            864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=94.16  E-value=0.65  Score=47.04  Aligned_cols=139  Identities=12%  Similarity=0.097  Sum_probs=85.6

Q ss_pred             Cceecccccc------cCCCCceeEEEecC-CCc-EEEeCCCCcEEEEecccccc---ce--ecCCCCCCCeeEEEeCCC
Q 044877           17 PVLNWSQGHQ------FSRGTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQ---AK--TAFPGLGSPIRYVDVTYD   83 (244)
Q Consensus        17 ~~~~~~~~k~------Y~~~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~---aK--t~lpglGdPI~~vdvS~D   83 (244)
                      .++-|+....      |......+|+.+++ +.+ +|.|+.+|-|=+||.+.+..   +-  .+.-.|-+|++.+....+
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~  302 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN  302 (555)
T ss_pred             eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence            3566665544      56778899999999 666 89999999999999975432   11  122357789999987766


Q ss_pred             CCE--EEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchh-hcCCccceeeeeeeeecCCCCcce
Q 044877           84 GRW--ILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSH-LAGVNNKFHKAQFSWVTENGKQER  159 (244)
Q Consensus        84 G~~--lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~-~~G~~~~Ft~akFn~~tg~~~~E~  159 (244)
                      ..-  +++++ |..|..|++..          +..      |.-..+.=..+|.. .....+.-|..+|-  ++.  ..+
T Consensus       303 ~~~~~f~s~ssDG~i~~W~~~~----------l~~------P~e~~~~~~~~~~~~~~~~~~~~t~~~F~--~~~--p~~  362 (555)
T KOG1587|consen  303 EHNTEFFSLSSDGSICSWDTDM----------LSL------PVEGLLLESKKHKGQQSSKAVGATSLKFE--PTD--PNH  362 (555)
T ss_pred             CCCCceEEEecCCcEeeeeccc----------ccc------chhhcccccccccccccccccceeeEeec--cCC--Cce
Confidence            555  66555 68899998753          221      22111111111110 01112233344665  323  577


Q ss_pred             EEEEeeCCeEEEEech
Q 044877          160 HLVATVGKFSVIWNFQ  175 (244)
Q Consensus       160 ~IvtStG~fvvvWn~~  175 (244)
                      .||++...+|+.=+-+
T Consensus       363 FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  363 FIVGTEEGKVYKGCRK  378 (555)
T ss_pred             EEEEcCCcEEEEEecc
Confidence            9999999999884333

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.16  E-value=0.11  Score=48.34  Aligned_cols=63  Identities=16%  Similarity=0.224  Sum_probs=47.9

Q ss_pred             ecCCCc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCC--CCCEEEEeC-CcceEEEEe
Q 044877           38 STGDGS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTY--DGRWILGTT-DTYLILICT  100 (244)
Q Consensus        38 ts~~G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~--DG~~lLaT~-~~~L~L~dt  100 (244)
                      ++-.|. ||++|.||.||+|..+...  +....|.|+..|+.-++.-.  -|..|.+.+ +..++||.-
T Consensus        19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen   19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            344455 9999999999999997543  23345679999999999986  787765444 577999975

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=94.14  E-value=0.07  Score=50.65  Aligned_cols=68  Identities=13%  Similarity=0.236  Sum_probs=46.9

Q ss_pred             eEEEecCCCc-EEEe----CCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--Cc-ceEEEEee
Q 044877           34 QCFASTGDGS-IVVG----SLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DT-YLILICTL  101 (244)
Q Consensus        34 t~vats~~G~-IavG----S~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~-~L~L~dt~  101 (244)
                      --+.++|++. +.+.    ...+.|-++|..+.+..++.-++-|-++.|+.+|+||+++..+.  .+ .|.++|+.
T Consensus       272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            4578899886 8777    66799999999988767766566666799999999999888775  35 79999974

...

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.12  E-value=0.85  Score=46.93  Aligned_cols=95  Identities=20%  Similarity=0.310  Sum_probs=65.8

Q ss_pred             cceeeecc---cCCCceecccccccCCCCc-eeEEEecCCCcEEEeCCCC-cEEEEeccccccc-eecCCCCCCCeeEEE
Q 044877            6 GIVQNLAN---AGAPVLNWSQGHQFSRGTN-FQCFASTGDGSIVVGSLDG-KIRLYSSNSMRQA-KTAFPGLGSPIRYVD   79 (244)
Q Consensus         6 ~~~~~~~~---~~~~~~~~~~~k~Y~~~~~-Ft~vats~~G~IavGS~dG-~IRLyD~~~~r~a-Kt~lpglGdPI~~vd   79 (244)
                      |.|++...   .+..-+.|.....+.++-. .+-+..+.-+.+|+-+.+| .+.+||.....-- ...+ ...++|.++|
T Consensus         1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLD   79 (631)
T PF12234_consen    1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLD   79 (631)
T ss_pred             CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeece
Confidence            55555542   3556788999888877766 5566666777765555544 5899999654311 1112 3489999998


Q ss_pred             eC--CCCCEEEEeC-CcceEEEEee
Q 044877           80 VT--YDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        80 vS--~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .+  |||+.|||-+ .+.++|+-..
T Consensus        80 Wtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   80 WTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             eeecCCCCEEEEEEcCcEEEEEEcc
Confidence            76  9999999998 5778887654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=94.12  E-value=0.13  Score=48.90  Aligned_cols=70  Identities=17%  Similarity=0.265  Sum_probs=54.3

Q ss_pred             eeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC-CEEEEe-CCcceEEEEeee
Q 044877           33 FQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG-RWILGT-TDTYLILICTLF  102 (244)
Q Consensus        33 Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG-~~lLaT-~~~~L~L~dt~~  102 (244)
                      .-.+.++|+-+  ||+|+.||.||+||.+.-+..-+.||+|..=+-.|.+.|-- +.||+. ++..+.|+.+.-
T Consensus       217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            34455677544  89999999999999987766767899999999999999764 444544 467799998753

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.07  E-value=0.093  Score=52.16  Aligned_cols=88  Identities=16%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             ecccCCCceeccccc-cc-----CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC
Q 044877           11 LANAGAPVLNWSQGH-QF-----SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD   83 (244)
Q Consensus        11 ~~~~~~~~~~~~~~k-~Y-----~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D   83 (244)
                      +.+++-.|-.|+-.- .+     .-..+.+++|.+++|+ +||.+.|-.|++||.++..+..|..  .-.|...+++|.-
T Consensus       268 ~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~--tp~~a~~ls~Sqk  345 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR--TPHPASNLSLSQK  345 (545)
T ss_pred             EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee--cCCCccccccccc
Confidence            445667788887642 22     4566789999999998 9999999999999998776554322  2567888888877


Q ss_pred             CCEEEEeCC-cceEEEEeee
Q 044877           84 GRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        84 G~~lLaT~~-~~L~L~dt~~  102 (244)
                      |-  ||.+. +++.||--..
T Consensus       346 gl--LA~~~G~~v~iw~d~~  363 (545)
T KOG1272|consen  346 GL--LALSYGDHVQIWKDAL  363 (545)
T ss_pred             cc--eeeecCCeeeeehhhh
Confidence            75  56655 7799996443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=94.06  E-value=0.29  Score=47.53  Aligned_cols=119  Identities=18%  Similarity=0.156  Sum_probs=78.2

Q ss_pred             CCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCC--CCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeecc
Q 044877           28 SRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFP--GLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTD  104 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lp--glGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~  104 (244)
                      ..+.++++.+.+.+-.+.++...|++..||....-.++ ..|  ||=.-++.|.+|||+++||.+=+ .-||+...    
T Consensus       106 v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y----  180 (390)
T KOG3914|consen  106 VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY----  180 (390)
T ss_pred             cccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEec----
Confidence            45667778888888789999999999999987632122 334  44569999999999999954433 45887653    


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~  179 (244)
                                       |++--+.     -...||.. |-+ +-..    ..+-..+++|.++-+.+||.++=+.
T Consensus       181 -----------------pa~f~Ie-----sfclGH~e-FVS-~isl----~~~~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  181 -----------------PATFVIE-----SFCLGHKE-FVS-TISL----TDNYLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             -----------------Ccccchh-----hhccccHh-hee-eeee----ccCceeeecCCCCcEEEEecccCCc
Confidence                             3322222     12345542 222 1121    1234579999999999999876543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=94.00  E-value=0.059  Score=56.78  Aligned_cols=69  Identities=19%  Similarity=0.259  Sum_probs=60.3

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      -+-|++++..|+ |++||.|-.+++|..-+.++.- .++|+...|+.++++.+...+.|.+ +.-|+.|...
T Consensus       192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             heeeeeeccccceEeecCccceeeeeeccchhhhc-cCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            367999999998 9999999999999987777655 5799999999999999999998775 5669999853

>PRK03629 tolB translocation protein TolB; Provisional

Probab=93.91  E-value=0.28  Score=46.96  Aligned_cols=65  Identities=17%  Similarity=-0.007  Sum_probs=46.2

Q ss_pred             eEEEecCCCc-EEE-eCCCCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877           34 QCFASTGDGS-IVV-GSLDGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT  100 (244)
Q Consensus        34 t~vats~~G~-Iav-GS~dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt  100 (244)
                      .+++.+|+|. ||. .+.+|.  |.+||..+++ .+. +......+.+..+||||++|+.+++  ....||..
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV  316 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence            4689999998 664 466664  8889997664 332 3334557889999999999997775  34556543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.80  E-value=0.82  Score=44.17  Aligned_cols=68  Identities=10%  Similarity=0.032  Sum_probs=44.2

Q ss_pred             CceeEEEecCCCc-EEEeCC-CC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-c--ceEEEEe
Q 044877           31 TNFQCFASTGDGS-IVVGSL-DG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-T--YLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~-dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~--~L~L~dt  100 (244)
                      ....+.+.+|+|. ||..+. +|  .|.+||..+++. + .+........+..+||||++|+.+. . .  .|.+||.
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-E-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-E-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            3466889999998 766544 33  588889876542 2 2222333445789999999998553 2 3  2666664

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.79  E-value=0.25  Score=47.09  Aligned_cols=73  Identities=12%  Similarity=0.033  Sum_probs=53.4

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccc--ccc-ceecCCCCCCCeeEEEeC-CCCCEEEEeC--CcceEEEEeeec
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNS--MRQ-AKTAFPGLGSPIRYVDVT-YDGRWILGTT--DTYLILICTLFT  103 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~--~r~-aKt~lpglGdPI~~vdvS-~DG~~lLaT~--~~~L~L~dt~~~  103 (244)
                      .-..||.++..|. +|++|.|+.|++||...  ++= .-.....++..|.-|+.- |.==-+||+|  +.++.||+-+.+
T Consensus        14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~   93 (361)
T KOG2445|consen   14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK   93 (361)
T ss_pred             ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence            5588999999998 99999999999999532  111 111345688899999766 4433455666  688999997543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=93.75  E-value=0.15  Score=49.40  Aligned_cols=68  Identities=19%  Similarity=0.129  Sum_probs=55.2

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .+-||.++|++ |.++..|+.||+=....---..+++-||.+=|..|++.++-- |++.+ +++|++||..
T Consensus       154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  154 LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT  223 (390)
T ss_pred             hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence            57899999988 999999999998665433345666678999999999987655 66666 8999999974

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=93.73  E-value=0.22  Score=53.61  Aligned_cols=66  Identities=23%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             eEEEecCCCcE-EEeCCCCcEEEEeccccccceecCCCCC--------------CCeeEEEeCCCCCEEEEeCC-cceEE
Q 044877           34 QCFASTGDGSI-VVGSLDGKIRLYSSNSMRQAKTAFPGLG--------------SPIRYVDVTYDGRWILGTTD-TYLIL   97 (244)
Q Consensus        34 t~vats~~G~I-avGS~dG~IRLyD~~~~r~aKt~lpglG--------------dPI~~vdvS~DG~~lLaT~~-~~L~L   97 (244)
                      .+++++++|.| ++-+.++.||.||..++... + +.+.|              ....+|++++||+.++|.+. +.|++
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-T-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-E-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            58999999994 56677889999998655322 1 22222              24579999999998888775 66999


Q ss_pred             EEee
Q 044877           98 ICTL  101 (244)
Q Consensus        98 ~dt~  101 (244)
                      ||..
T Consensus       885 id~~  888 (1057)
T PLN02919        885 LDLN  888 (1057)
T ss_pred             EECC
Confidence            9974

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=93.67  E-value=0.94  Score=46.18  Aligned_cols=181  Identities=17%  Similarity=0.230  Sum_probs=98.7

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCee-----------------------------------
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIR-----------------------------------   76 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~-----------------------------------   76 (244)
                      ..|...+++|. +++.++||.|++|.+.++  .+..+-..+.||.                                   
T Consensus       107 ~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkA  184 (737)
T KOG1524|consen  107 ISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRA  184 (737)
T ss_pred             hhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEec
Confidence            46777889998 999999999999999654  2222333444444                                   


Q ss_pred             ------EEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcC--Cccceeee-
Q 044877           77 ------YVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAG--VNNKFHKA-  146 (244)
Q Consensus        77 ------~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G--~~~~Ft~a-  146 (244)
                            +++.++....|++.-.+. ..+||.+       |.+-|.+..-+- |. --+.-.||...+.|  +...|++. 
T Consensus       185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey-~I-TSva~npd~~~~v~S~nt~R~~~p~  255 (737)
T KOG1524|consen  185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEY-AI-TSVAFNPEKDYLLWSYNTARFSSPR  255 (737)
T ss_pred             cCcEEEEeecCccccceeecCCceeEEeeccc-------CcccccCChhcc-ce-eeeeeccccceeeeeeeeeeecCCC
Confidence                  445555555444444322 5566642       334455432111 11 23455677555555  34566665 


Q ss_pred             -----eeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCceeeeeEEEecCcccccc-----------c
Q 044877          147 -----QFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDS-----------R  210 (244)
Q Consensus       147 -----kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~-----------~  210 (244)
                           ..+|..  +...-..-|++|..++..=.++=+.-.              .+++..+++..+..           +
T Consensus       256 ~GSifnlsWS~--DGTQ~a~gt~~G~v~~A~~ieq~l~~~--------------n~~~t~~~r~~I~vrdV~~~v~d~LE  319 (737)
T KOG1524|consen  256 VGSIFNLSWSA--DGTQATCGTSTGQLIVAYAIEQQLVSG--------------NLKATSKSRKSITVRDVATGVQDILE  319 (737)
T ss_pred             ccceEEEEEcC--CCceeeccccCceEEEeeeehhhhhhc--------------cceeEeeccceEEeehhhhhHHHHhh
Confidence                 345654  224556677888888777665544211              11222222222111           1


Q ss_pred             eecCccccCCCCCCCEEEEcCCceeeeeecc
Q 044877          211 FMHDKFAVSDLPEAPLVIATPMKVSSFSISS  241 (244)
Q Consensus       211 f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~  241 (244)
                      |.+---+|+ -.-..+||||...|.-.+.-+
T Consensus       320 ~p~rv~k~s-L~Y~hLvvaTs~qvyiys~kn  349 (737)
T KOG1524|consen  320 FPQRVVKFS-LGYGHLVVATSLQVYIYSEKN  349 (737)
T ss_pred             Cccceeeee-eceeEEEEEeccEEEEEecCC
Confidence            111111222 224689999999998877644

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.58  E-value=1.9  Score=42.30  Aligned_cols=120  Identities=17%  Similarity=0.155  Sum_probs=77.5

Q ss_pred             cEEEeCCCCcEEEEeccccc-cc-eecCC-CCCCCeeEEEe----CCCCCEEEEe-CCcceEEEEeeeccCCCCcccccc
Q 044877           43 SIVVGSLDGKIRLYSSNSMR-QA-KTAFP-GLGSPIRYVDV----TYDGRWILGT-TDTYLILICTLFTDKNGTTKTGFN  114 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r-~a-Kt~lp-glGdPI~~vdv----S~DG~~lLaT-~~~~L~L~dt~~~~~~~~~~~GF~  114 (244)
                      .|++||..|.+|+|+-.... .. -.+|. .+++||..|..    +..+...||- ..+.|.+|.....++..+..    
T Consensus        39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g----  114 (418)
T PF14727_consen   39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG----  114 (418)
T ss_pred             EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC----
Confidence            49999999999999984322 11 12332 58999999964    3344444444 56889999886554432211    


Q ss_pred             cccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          115 GRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       115 ~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                              .-..|.+-.||.. .-...||+.+.|--   ....+.+.|=|.+..+-+++=+.+.
T Consensus       115 --------~~~~L~~~yeh~l-~~~a~nm~~G~Fgg---~~~~~~IcVQS~DG~L~~feqe~~~  166 (418)
T PF14727_consen  115 --------NQYQLELIYEHSL-QRTAYNMCCGPFGG---VKGRDFICVQSMDGSLSFFEQESFA  166 (418)
T ss_pred             --------cEEEEEEEEEEec-ccceeEEEEEECCC---CCCceEEEEEecCceEEEEeCCcEE
Confidence                    2245666667652 22356888888862   2225888888888888877755554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.40  E-value=0.22  Score=34.45  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=28.8

Q ss_pred             ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEecc
Q 044877           26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSN   59 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~   59 (244)
                      +.....+.++++.+|... ||+|+.||.|.+|+..
T Consensus         7 ~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    7 EKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            344455688999999988 9999999999999983

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.32  E-value=1.1  Score=49.07  Aligned_cols=76  Identities=18%  Similarity=0.255  Sum_probs=52.5

Q ss_pred             ccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc------cceecCCCCCCCeeEEEeCCCCCEEEEeCC-cce
Q 044877           24 GHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR------QAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYL   95 (244)
Q Consensus        24 ~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r------~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L   95 (244)
                      .+.-+.... ..++.++++. .|+||.||.||+||.+...      +....+...|.++..+..=+.|..+++.++ ..+
T Consensus      1044 L~Ehs~~v~-k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1044 LHEHSSAVI-KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhhcccccc-ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            333344444 3444555655 9999999999999996221      122234448999999999999999987775 557


Q ss_pred             EEEEe
Q 044877           96 ILICT  100 (244)
Q Consensus        96 ~L~dt  100 (244)
                      ++.+.
T Consensus      1123 ~~~~i 1127 (1431)
T KOG1240|consen 1123 RVLRI 1127 (1431)
T ss_pred             EEEEc
Confidence            77665

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.10  E-value=0.42  Score=48.06  Aligned_cols=67  Identities=25%  Similarity=0.416  Sum_probs=53.5

Q ss_pred             CceeEEEecCCCcEEEeCCCC-cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEe
Q 044877           31 TNFQCFASTGDGSIVVGSLDG-KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG-~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt  100 (244)
                      ..+.-+.+.++ ..|+|..|| .+-+||..++. +|-..+++| -|-.|.+++||++++++.+.. |.++|.
T Consensus       362 VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~el~vidi  430 (668)
T COG4946         362 VRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG-NIEAVKVSPDGKKVVVANDRFELWVIDI  430 (668)
T ss_pred             eEEEEEccCCc-ceEEeccCCceEEEEecCCce-EEEeeCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence            44555666666 489999999 79999998885 665667777 599999999999999887755 888875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.00  E-value=0.45  Score=47.83  Aligned_cols=69  Identities=16%  Similarity=0.104  Sum_probs=55.4

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-----CcceEEEEee
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-----DTYLILICTL  101 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-----~~~L~L~dt~  101 (244)
                      +..+++.+++|. ++++...++|-++|.-+++ ++..-..--+-|+.++++||++|++=+-     ...|+|+|..
T Consensus       403 ~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             ceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence            478999999998 9999999999999998874 6633334456899999999999998543     2448888863

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=92.92  E-value=0.61  Score=47.28  Aligned_cols=115  Identities=17%  Similarity=0.341  Sum_probs=73.0

Q ss_pred             CCceeEEEecCCC--cEEEeCCCCcEEEEeccccc---------------------cc-eecCCC----C-CCCeeEEEe
Q 044877           30 GTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMR---------------------QA-KTAFPG----L-GSPIRYVDV   80 (244)
Q Consensus        30 ~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r---------------------~a-Kt~lpg----l-GdPI~~vdv   80 (244)
                      ++..||+..=+.+  .+.+...+|..-+||....-                     +. ++.=|-    + ..+|..+++
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            4667888887743  38889999999999763100                     01 110110    1 238999999


Q ss_pred             CCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcce
Q 044877           81 TYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQER  159 (244)
Q Consensus        81 S~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~  159 (244)
                      ||||++|++-+ +.+|||+|-             .+        -.+|-+-  + -|.|+=   .  ...|.+ +  +..
T Consensus       299 S~DG~~LA~VSqDGfLRvF~f-------------dt--------~eLlg~m--k-SYFGGL---L--CvcWSP-D--GKy  346 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDF-------------DT--------QELLGVM--K-SYFGGL---L--CVCWSP-D--GKY  346 (636)
T ss_pred             cCCCceEEEEecCceEEEeec-------------cH--------HHHHHHH--H-hhccce---E--EEEEcC-C--ccE
Confidence            99999998878 588999993             31        0011000  0 122221   1  456754 3  577


Q ss_pred             EEEEeeCCeEEEEechh
Q 044877          160 HLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       160 ~IvtStG~fvvvWn~~k  176 (244)
                      ++++-.+-.|-||+|..
T Consensus       347 IvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  347 IVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             EEecCCcceEEEEEecc
Confidence            88888899999999975

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=92.90  E-value=0.092  Score=50.37  Aligned_cols=69  Identities=17%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             eEEEecCCCc--EEEeCCCCcEEEEeccccc----cce-----------ecCCCCCCCeeEEEeCCCCCEEEEeCCcceE
Q 044877           34 QCFASTGDGS--IVVGSLDGKIRLYSSNSMR----QAK-----------TAFPGLGSPIRYVDVTYDGRWILGTTDTYLI   96 (244)
Q Consensus        34 t~vats~~G~--IavGS~dG~IRLyD~~~~r----~aK-----------t~lpglGdPI~~vdvS~DG~~lLaT~~~~L~   96 (244)
                      ++.-++|.-+  +.-.|.+|.|+|-|.+...    ..|           ..+.+.-..|..+.+|++|+|||+-.-.++.
T Consensus       225 tSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvk  304 (460)
T COG5170         225 TSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVK  304 (460)
T ss_pred             hhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEE
Confidence            4445566444  6678899999999996211    111           1222334578888999999999998889999


Q ss_pred             EEEeee
Q 044877           97 LICTLF  102 (244)
Q Consensus        97 L~dt~~  102 (244)
                      |||...
T Consensus       305 iwDvnm  310 (460)
T COG5170         305 IWDVNM  310 (460)
T ss_pred             EEeccc
Confidence            999853

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.75  E-value=4.8  Score=35.21  Aligned_cols=56  Identities=21%  Similarity=0.245  Sum_probs=42.2

Q ss_pred             cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      .|++|..+| +-+|+......-+. +... .+|+.|.+-++-..+|+=++.+|.+++..
T Consensus         9 ~L~vGt~~G-l~~~~~~~~~~~~~-i~~~-~~I~ql~vl~~~~~llvLsd~~l~~~~L~   64 (275)
T PF00780_consen    9 RLLVGTEDG-LYVYDLSDPSKPTR-ILKL-SSITQLSVLPELNLLLVLSDGQLYVYDLD   64 (275)
T ss_pred             EEEEEECCC-EEEEEecCCcccee-Eeec-ceEEEEEEecccCEEEEEcCCccEEEEch
Confidence            599999999 88998832222222 2212 24999999999999999999999999864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.61  E-value=0.52  Score=43.58  Aligned_cols=73  Identities=16%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             cCCCCceeEEEecCCCc-EEEeC-CCCcEEEEecc--ccc--cceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEE
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGS-LDGKIRLYSSN--SMR--QAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILI   98 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS-~dG~IRLyD~~--~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~   98 (244)
                      +...+.=..++.+|+|. ++++. ..+.|-+|+..  +++  ... .++--|.--.++.++|||+||++++.  +.|.++
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~-~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ-TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE-EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE-EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            33334557899999998 65544 56779999982  222  222 34545776799999999999999885  669888


Q ss_pred             Ee
Q 044877           99 CT  100 (244)
Q Consensus        99 dt  100 (244)
                      +.
T Consensus       320 ~~  321 (345)
T PF10282_consen  320 DI  321 (345)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=92.56  E-value=2  Score=41.98  Aligned_cols=68  Identities=22%  Similarity=0.263  Sum_probs=54.6

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCC---CCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeec
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFP---GLGSPIRYVDVTYDGRWILGTTDTYLILICTLFT  103 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lp---glGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~  103 (244)
                      -|+-+-.||+|+ +..++-|+.-|||...   +.+|..+   +-| .|++-+.||+|++||-+|...=+|+-..+.
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~---q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~  311 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQEN---QSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFD  311 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhc---ccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence            378889999998 8999999999999652   3333333   233 999999999999999999877778887754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=92.56  E-value=0.6  Score=44.68  Aligned_cols=64  Identities=13%  Similarity=0.093  Sum_probs=46.6

Q ss_pred             EecCCCc-EEEeCC----------CCcEEEEeccccccceecCC--C-----CCCCeeEEEeCCCCCEEEEe--C-Ccce
Q 044877           37 ASTGDGS-IVVGSL----------DGKIRLYSSNSMRQAKTAFP--G-----LGSPIRYVDVTYDGRWILGT--T-DTYL   95 (244)
Q Consensus        37 ats~~G~-IavGS~----------dG~IRLyD~~~~r~aKt~lp--g-----lGdPI~~vdvS~DG~~lLaT--~-~~~L   95 (244)
                      ..|++|. |++++.          ++.|.+||..+.+-.+. +|  .     .|.--..+.+||||+||+..  + .+.+
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-IELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV  130 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-EccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence            4888887 776666          89999999987764442 34  1     13334588999999999954  3 4779


Q ss_pred             EEEEee
Q 044877           96 ILICTL  101 (244)
Q Consensus        96 ~L~dt~  101 (244)
                      -++|+.
T Consensus       131 ~VvD~~  136 (352)
T TIGR02658       131 GVVDLE  136 (352)
T ss_pred             EEEECC
Confidence            999975

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.34  E-value=1.1  Score=41.49  Aligned_cols=73  Identities=16%  Similarity=0.317  Sum_probs=48.6

Q ss_pred             CCCCceeEEEecCCCc--EEEeCCCCcEEEEecc--ccc--cc--eecCCC--CCC-CeeEEEeCCCCCEEEEeCC--cc
Q 044877           28 SRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSN--SMR--QA--KTAFPG--LGS-PIRYVDVTYDGRWILGTTD--TY   94 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~--~~r--~a--Kt~lpg--lGd-PI~~vdvS~DG~~lLaT~~--~~   94 (244)
                      ..+.-=..++++++|.  .++.-.++.|-.|+..  .++  ..  -..+|.  .+. .-.+|.+||||+||.++..  ++
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence            3333346799999997  4677788999999886  211  11  112332  112 5678999999999998874  77


Q ss_pred             eEEEEe
Q 044877           95 LILICT  100 (244)
Q Consensus        95 L~L~dt  100 (244)
                      |.+++.
T Consensus       269 I~vf~~  274 (345)
T PF10282_consen  269 ISVFDL  274 (345)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=92.26  E-value=0.51  Score=44.92  Aligned_cols=65  Identities=18%  Similarity=0.068  Sum_probs=44.3

Q ss_pred             eeEEEecCCCc-EE-EeCCCCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc----ceEEEE
Q 044877           33 FQCFASTGDGS-IV-VGSLDGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT----YLILIC   99 (244)
Q Consensus        33 Ft~vats~~G~-Ia-vGS~dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~----~L~L~d   99 (244)
                      ..+.+.+|+|. || +.+.+|.  |.+||..++. .+ .|-.......+.++||||++|+.+++.    .|.+||
T Consensus       248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN  320 (435)
T ss_pred             ccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence            34778999997 54 6677776  6666886654 33 233344467789999999999977642    355656

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.16  E-value=0.29  Score=50.62  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             ccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccC
Q 044877           26 QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDK  105 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~  105 (244)
                      -..-..+.||++++.+ +|+.|+.-|-+-||.+-++...+.-..+-..-|+...+|++..+++|+|.+...-|-....  
T Consensus        31 ~~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~--  107 (726)
T KOG3621|consen   31 FFPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK--  107 (726)
T ss_pred             cCcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc--
Confidence            3455667999999998 8999999999999999665444422233223455669999999999999988776664321  


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSH  135 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~  135 (244)
                                     ..+|+...++|+|..
T Consensus       108 ---------------~~p~~~~~~t~~d~~  122 (726)
T KOG3621|consen  108 ---------------ELPRDLDYVTPCDKS  122 (726)
T ss_pred             ---------------cCCCcceeecccccc
Confidence                           135667777888874

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=92.12  E-value=0.18  Score=47.27  Aligned_cols=69  Identities=13%  Similarity=0.155  Sum_probs=56.5

Q ss_pred             eeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeC-CCCCEEEEeC-CcceEEEEee
Q 044877           33 FQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT-YDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS-~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .+|++.+|.-+  +++|+.||.|-|||.+...+--.+|..+..||.-|-|. .|+..|+..+ +..|..||..
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            88999999654  89999999999999976644444567789999999999 5777777666 5779999975

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.92  E-value=0.6  Score=50.51  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             CCcEEEeCCCCcEEEEeccccccce--ecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           41 DGSIVVGSLDGKIRLYSSNSMRQAK--TAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        41 ~G~IavGS~dG~IRLyD~~~~r~aK--t~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      .+-||+|+..|.|-++|.++-  .+  ..=...+.||++++++.||+.+++.-. .-+.+||+.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~  160 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH  160 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc
Confidence            345999999999999998651  22  111346789999999999999998875 669999985

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.82  E-value=3.4  Score=44.02  Aligned_cols=165  Identities=18%  Similarity=0.239  Sum_probs=89.4

Q ss_pred             EecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCC-eeEEEeCCCCCEEEEeC--Cc----ceEEEEeeeccCCCCc
Q 044877           37 ASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSP-IRYVDVTYDGRWILGTT--DT----YLILICTLFTDKNGTT  109 (244)
Q Consensus        37 ats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdP-I~~vdvS~DG~~lLaT~--~~----~L~L~dt~~~~~~~~~  109 (244)
                      ..+..|.||.|+.+|.|-.++..-.  .-.-+..+... |+.+-+..+-.+|.+.-  ..    +|++||-...++++  
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s~~--~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~--  106 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSSFQ--LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN--  106 (933)
T ss_pred             EcCCCceEEEeeccccEEEecccce--eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC--
Confidence            3345667999999999999997321  10123333344 66666655555665543  23    79999965543222  


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhc-CCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccc
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLA-GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQ  188 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~-G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~  188 (244)
                                  | |-++.   ||..+. ..+.+-.|+-+=-+-.+  -..++++-++..|+-. =-+|++-+.      
T Consensus       107 ------------s-P~c~~---~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~-~GDi~RDrg------  161 (933)
T KOG2114|consen  107 ------------S-PQCLY---EHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICY-KGDILRDRG------  161 (933)
T ss_pred             ------------C-cceee---eeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEE-cCcchhccc------
Confidence                        1 44442   111222 12344455544433222  4556666666665543 222332211      


Q ss_pred             cCCceeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCceeeeeeccc
Q 044877          189 EGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISSR  242 (244)
Q Consensus       189 ~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~~  242 (244)
                          +-..|. .+..|.|..       -.|.+++.+-+-|||++.|.+.++++|
T Consensus       162 ----sr~~~~-~~~~~pITg-------L~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  162 ----SRQDYS-HRGKEPITG-------LALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             ----cceeee-ccCCCCcee-------eEEecCCceeEEEEecceeEEEEecCC
Confidence                122333 345566663       334444334489999999999999875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=91.70  E-value=1.3  Score=47.94  Aligned_cols=65  Identities=14%  Similarity=0.048  Sum_probs=44.7

Q ss_pred             eEEEecCCCc-EE-EeCCCCcEEEEeccccccceec----------CC------------CCCCCeeEEEeCCCCCEEEE
Q 044877           34 QCFASTGDGS-IV-VGSLDGKIRLYSSNSMRQAKTA----------FP------------GLGSPIRYVDVTYDGRWILG   89 (244)
Q Consensus        34 t~vats~~G~-Ia-vGS~dG~IRLyD~~~~r~aKt~----------lp------------glGdPI~~vdvS~DG~~lLa   89 (244)
                      +.++++++|. |+ +-+.++.||.||..++. ....          +-            .+..| .+|++++||+.++|
T Consensus       743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~-~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVA  820 (1057)
T PLN02919        743 SGISLSPDLKELYIADSESSSIRALDLKTGG-SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDGQIYVA  820 (1057)
T ss_pred             cEEEEeCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecccccCcccccccCCCCchhhhhccCC-ceeeEeCCCcEEEE
Confidence            4689999886 54 55667999999975432 1100          00            12234 48999999998778


Q ss_pred             eCC-cceEEEEe
Q 044877           90 TTD-TYLILICT  100 (244)
Q Consensus        90 T~~-~~L~L~dt  100 (244)
                      ... ..|+.||.
T Consensus       821 Ds~N~rIrviD~  832 (1057)
T PLN02919        821 DSYNHKIKKLDP  832 (1057)
T ss_pred             ECCCCEEEEEEC
Confidence            775 67999996

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=91.41  E-value=0.93  Score=43.08  Aligned_cols=83  Identities=14%  Similarity=0.087  Sum_probs=52.3

Q ss_pred             EEEeCCCCcEEEEeccccc-cceecCCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCC
Q 044877           44 IVVGSLDGKIRLYSSNSMR-QAKTAFPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNK  120 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~  120 (244)
                      +++|+.||.++.||.+..+ ..-+-..-+..-|++|-=|| ++.+|...+ +..|++||++-     -++--|....+  
T Consensus       181 vytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn-----m~kPl~~~~v~--  253 (339)
T KOG0280|consen  181 VYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN-----MGKPLFKAKVG--  253 (339)
T ss_pred             EEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc-----ccCccccCccc--
Confidence            8999999999999997221 11111123667899998885 566665444 78899999972     22222333222  


Q ss_pred             CCcceeeeeCccch
Q 044877          121 IAAPRLLKLTPLDS  134 (244)
Q Consensus       121 kp~pr~L~L~Pe~~  134 (244)
                       ..-=|++=+|++.
T Consensus       254 -GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  254 -GGVWRIKHHPEIF  266 (339)
T ss_pred             -cceEEEEecchhh
Confidence             2235667778775

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=91.36  E-value=2  Score=41.77  Aligned_cols=154  Identities=18%  Similarity=0.289  Sum_probs=94.3

Q ss_pred             CCceecccccccC----CCCceeEEEecCCCc-EEEeCCCCcEEEEecccccc----ceecC----CC--------CCCC
Q 044877           16 APVLNWSQGHQFS----RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ----AKTAF----PG--------LGSP   74 (244)
Q Consensus        16 ~~~~~~~~~k~Y~----~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~----aKt~l----pg--------lGdP   74 (244)
                      ..-+.|.++..+.    .-...+||-++-.|. +|+|..+|.+-+|-......    -+|.+    |.        .-.+
T Consensus         7 ~~~~~w~f~~~~~~~vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEK   86 (433)
T KOG1354|consen    7 NEILMWKFSQVFGLEVTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEK   86 (433)
T ss_pred             chhhhhhhhhhhcceechhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhh
Confidence            3467787776664    345589999999998 99999999999998753322    33444    22        2357


Q ss_pred             eeEEEeCCCC---CEEEEeCCcceEEEEeeeccCCCCcccccccccCC---CCCcceeeeeCccchhh-------c--CC
Q 044877           75 IRYVDVTYDG---RWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGN---KIAAPRLLKLTPLDSHL-------A--GV  139 (244)
Q Consensus        75 I~~vdvS~DG---~~lLaT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~---~kp~pr~L~L~Pe~~~~-------~--G~  139 (244)
                      |.-|..-++|   .|||+|.+.+|.||-.+-++.   .+.||......   ..+.-|.-.++|-+..+       +  .|
T Consensus        87 inkIrw~~~~n~a~FLlstNdktiKlWKi~er~~---k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   87 INKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGS---KKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhceecCCCCccEEEEecCCcceeeeeeecccc---ccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            7778777776   478899999999999876543   33445543221   11222333445544321       1  23


Q ss_pred             ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          140 NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       140 ~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                      +..-.+--+|     ..+|+.+ .+-+=-+=.|+++.+=
T Consensus       164 tyhiNSIS~N-----sD~Et~l-SADdLRINLWnlei~d  196 (433)
T KOG1354|consen  164 TYHINSISVN-----SDKETFL-SADDLRINLWNLEIID  196 (433)
T ss_pred             eeEeeeeeec-----CccceEe-eccceeeeeccccccC
Confidence            3222233444     2256655 4566677899998653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.16  E-value=0.72  Score=42.98  Aligned_cols=58  Identities=17%  Similarity=0.203  Sum_probs=49.0

Q ss_pred             cEEEeCCCCcEEEEeccc--cccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           43 SIVVGSLDGKIRLYSSNS--MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~--~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      +||++|.||.+-+|....  ..--+|+|..+-+++-++..|.-|..|..++ ++.+.||--
T Consensus       225 ~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  225 TIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             eeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            599999999999998852  2234668888999999999999999998887 577999973

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=91.12  E-value=0.96  Score=45.79  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=61.1

Q ss_pred             eCCCCcE----EEEecc---ccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccC
Q 044877           47 GSLDGKI----RLYSSN---SMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMG  118 (244)
Q Consensus        47 GS~dG~I----RLyD~~---~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~  118 (244)
                      -|.+|++    .+|+..   -.+-+-|.+| ++.+|++.+.+|++++++..| +..|+|||....               
T Consensus       228 ~s~~g~~~~d~ciYE~~r~klqrvsvtsip-L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---------------  291 (545)
T PF11768_consen  228 ISVKGEPSADSCIYECSRNKLQRVSVTSIP-LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG---------------  291 (545)
T ss_pred             cCCCCCceeEEEEEEeecCceeEEEEEEEe-cCCcceEEecCcccceEEEEecCCeEEEEEcCCC---------------
Confidence            3446654    345553   2234567777 999999999999999999999 577999997421               


Q ss_pred             CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          119 NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       119 ~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                          .....            ...|-|.--+|.+   .+..++|+|.-.-+-.||.
T Consensus       292 ----~t~~~------------ka~~~P~~iaWHp---~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  292 ----VTLLA------------KAEFIPTLIAWHP---DGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             ----eeeee------------eecccceEEEEcC---CCcEEEEEcCCceEEEEEe
Confidence                11111            1345566666754   2466777776666666664

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.07  E-value=1.4  Score=42.12  Aligned_cols=106  Identities=15%  Similarity=0.126  Sum_probs=68.3

Q ss_pred             EeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeC-Ccc-eEEEEeeeccCCCCcccccccccCCCCC
Q 044877           46 VGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTY-LILICTLFTDKNGTTKTGFNGRMGNKIA  122 (244)
Q Consensus        46 vGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp  122 (244)
                      =|-..|.|++=|....+. +--.++.|-.+|..|+++-+|..|++++ +.+ ||||||.-+..-.+.             
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~-------------  220 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL-------------  220 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee-------------
Confidence            377789999999964432 3346789999999999999999886544 455 999999642211111             


Q ss_pred             cceeeeeCccchhhcCCc-cceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCc
Q 044877          123 APRLLKLTPLDSHLAGVN-NKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSH  182 (244)
Q Consensus       123 ~pr~L~L~Pe~~~~~G~~-~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~  182 (244)
                                   .-|-. ..-..--|+.     ....+.|+|--.-+.++.++.-..+..
T Consensus       221 -------------RRG~d~A~iy~iaFSp-----~~s~LavsSdKgTlHiF~l~~~~~~~~  263 (346)
T KOG2111|consen  221 -------------RRGVDRADIYCIAFSP-----NSSWLAVSSDKGTLHIFSLRDTENTED  263 (346)
T ss_pred             -------------ecCCchheEEEEEeCC-----CccEEEEEcCCCeEEEEEeecCCCCcc
Confidence                         11211 1222335552     145566677777888888887554444

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.06  E-value=2.9  Score=40.23  Aligned_cols=109  Identities=17%  Similarity=0.123  Sum_probs=66.9

Q ss_pred             eEEEecCCCcEEEeCCCC--cEEEEeccccc--cceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEeeeccCCC
Q 044877           34 QCFASTGDGSIVVGSLDG--KIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTLFTDKNG  107 (244)
Q Consensus        34 t~vats~~G~IavGS~dG--~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~~~~~~~  107 (244)
                      -++-++|+|+++..-.-|  .|.+||..-++  .+....-.=|.-=.||.|.|||++.-..|.  +++..|.....    
T Consensus       148 H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~----  223 (346)
T COG2706         148 HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA----  223 (346)
T ss_pred             ceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----
Confidence            367789999855555444  59999986332  111111123444589999999999988884  77999986421    


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                            ..       .=+.||           .+.-.|+.|.   |.....-+-+++.|+|+++=|
T Consensus       224 ------~g-------~~~~lQ-----------~i~tlP~dF~---g~~~~aaIhis~dGrFLYasN  262 (346)
T COG2706         224 ------VG-------KFEELQ-----------TIDTLPEDFT---GTNWAAAIHISPDGRFLYASN  262 (346)
T ss_pred             ------Cc-------eEEEee-----------eeccCccccC---CCCceeEEEECCCCCEEEEec
Confidence                  10       112333           1222244453   334456677889999999754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=90.76  E-value=7.1  Score=36.66  Aligned_cols=53  Identities=15%  Similarity=0.110  Sum_probs=38.3

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccc-----cceecCCCCCCCeeEEEeCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR-----QAKTAFPGLGSPIRYVDVTYD   83 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r-----~aKt~lpglGdPI~~vdvS~D   83 (244)
                      .+..-+|.|+++. +|.+...|.||+||..+..     -+......++++|-++.|..-
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~  102 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEY  102 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeecc
Confidence            3456789999998 8999999999999997422     223222235688999877643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=90.63  E-value=0.51  Score=48.02  Aligned_cols=63  Identities=10%  Similarity=0.063  Sum_probs=46.6

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEE
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL   97 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L   97 (244)
                      -..|+..++... |++|++|=.-++||..+. ..-+.- .+-.|||+|++.||.-|+ ..+-+++||
T Consensus       188 iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~Lf~S~-~~ey~ITSva~npd~~~~-v~S~nt~R~  251 (737)
T KOG1524|consen  188 LVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-NLFTSA-AEEYAITSVAFNPEKDYL-LWSYNTARF  251 (737)
T ss_pred             EEEEeecCccccceeecCCceeEEeecccCc-ccccCC-hhccceeeeeecccccee-eeeeeeeee
Confidence            467888888655 999999999999999654 344433 377899999999994444 455555654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=90.62  E-value=1.2  Score=41.85  Aligned_cols=57  Identities=26%  Similarity=0.122  Sum_probs=40.3

Q ss_pred             eEEEecCCCc-EE-EeCCCC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877           34 QCFASTGDGS-IV-VGSLDG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        34 t~vats~~G~-Ia-vGS~dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      .+.+.+|+|. || +.+.+|  +|.+||..+++ .+ .|-......++..+||||++|+.++.
T Consensus       246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~-~lt~~~~~~~~~~~spDg~~i~f~s~  306 (430)
T PRK00178        246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LS-RVTNHPAIDTEPFWGKDGRTLYFTSD  306 (430)
T ss_pred             CCeEECCCCCEEEEEEccCCCceEEEEECCCCC-eE-EcccCCCCcCCeEECCCCCEEEEEEC
Confidence            3678999997 65 556666  58888987654 33 23334445677899999999987764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=90.38  E-value=1.3  Score=42.76  Aligned_cols=57  Identities=18%  Similarity=0.102  Sum_probs=40.8

Q ss_pred             eEEEecCCCc-EE-EeCCCCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877           34 QCFASTGDGS-IV-VGSLDGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        34 t~vats~~G~-Ia-vGS~dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      .+.+.+|+|. || +.+.+|.  |.+||..+++ .+ .+......+...++||||++|+.++.
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~-~lt~~~~~~~~p~wSpDG~~I~f~s~  325 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LT-RITRHRAIDTEPSWHPDGKSLIFTSE  325 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eE-ECccCCCCccceEECCCCCEEEEEEC
Confidence            3678999998 65 4677775  7777876653 33 34444456688899999999987764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=90.18  E-value=0.99  Score=43.46  Aligned_cols=66  Identities=17%  Similarity=0.102  Sum_probs=44.8

Q ss_pred             eEEEecCCCc-EEEeC-CCCcEEEEecc--c-cccceecCCCCCCCeeEEEeCCCCCEEEEeCC----cceEEEEe
Q 044877           34 QCFASTGDGS-IVVGS-LDGKIRLYSSN--S-MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD----TYLILICT  100 (244)
Q Consensus        34 t~vats~~G~-IavGS-~dG~IRLyD~~--~-~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~----~~L~L~dt  100 (244)
                      +..+.+|+|. ||..| .+|..+||...  . ....+ .+...+..+....+||||++|+.++.    ..|.+||.
T Consensus       284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~-~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl  358 (428)
T PRK01029        284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR-LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL  358 (428)
T ss_pred             CCeEECCCCCEEEEEECCCCCceEEEEECcccccceE-EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            4678999998 76655 57877777532  1 11122 34445567888999999999987653    23778775

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=90.13  E-value=2.1  Score=42.48  Aligned_cols=119  Identities=13%  Similarity=0.037  Sum_probs=78.4

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCC---CeeEEEeCCCCCEEEEeCC-cceEEEEeeecc
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGS---PIRYVDVTYDGRWILGTTD-TYLILICTLFTD  104 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGd---PI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~  104 (244)
                      ..++-|++++.... +++|..+|.|-+-|..+.....  .-.+.+   .|-|++++|-...+++.++ .-+.+||.+-. 
T Consensus       105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~-  181 (609)
T KOG4227|consen  105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR-  181 (609)
T ss_pred             ccceEEEEEccCCeeEecCCCcceeEeeecccceeee--eecccCcccceeecccCCCCceEEEEecCceEEEEeccCC-
Confidence            34677899988655 9999999999999996543221  123444   8999999987666666665 77999997531 


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                                       |.|.-|-      -.++-+-+|..+-|+..+    -.-+.+++.-.=+=+||.++-.
T Consensus       182 -----------------~~~~~~~------~~AN~~~~F~t~~F~P~~----P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  182 -----------------QNPISLV------LPANSGKNFYTAEFHPET----PALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             -----------------CCCCcee------eecCCCccceeeeecCCC----ceeEEeccccCCCCceeecccc
Confidence                             3232222      223345689999999432    3445555655566788877643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=90.08  E-value=0.25  Score=52.29  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=59.5

Q ss_pred             ceeccccccc------CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe
Q 044877           18 VLNWSQGHQF------SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT   90 (244)
Q Consensus        18 ~~~~~~~k~Y------~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT   90 (244)
                      |.-|+-...|      ......+-.|.+.+-- ||++|.|-.||+|-+..+. --..|-||-..||+|++||=-    ++
T Consensus       214 vKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-pvsvLrghtgavtaiafsP~~----ss  288 (1113)
T KOG0644|consen  214 VKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-PVSVLRGHTGAVTAIAFSPRA----SS  288 (1113)
T ss_pred             eeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc-hHHHHhccccceeeeccCccc----cC
Confidence            5556544333      2334567777777644 9999999999999998763 344678999999999999965    56


Q ss_pred             C-CcceEEEEee
Q 044877           91 T-DTYLILICTL  101 (244)
Q Consensus        91 ~-~~~L~L~dt~  101 (244)
                      . +.++++||..
T Consensus       289 s~dgt~~~wd~r  300 (1113)
T KOG0644|consen  289 SDDGTCRIWDAR  300 (1113)
T ss_pred             CCCCceEecccc
Confidence            5 4889999987

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.05  E-value=0.65  Score=50.00  Aligned_cols=70  Identities=20%  Similarity=0.180  Sum_probs=52.5

Q ss_pred             CceeEEEecCCCc--EEEeCCCCc---EEEEeccccc-cceecCCCCCCCeeEEEeCCCC-CEEE-EeCCcceEEEEee
Q 044877           31 TNFQCFASTGDGS--IVVGSLDGK---IRLYSSNSMR-QAKTAFPGLGSPIRYVDVTYDG-RWIL-GTTDTYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~--IavGS~dG~---IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~DG-~~lL-aT~~~~L~L~dt~  101 (244)
                      ...+.++.+|++.  |+++|.|-.   |.|||.+.-. =.|+ +.+|.--|++|+..+.+ ++|| +.+++.++.|+..
T Consensus       207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~-~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI-LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh-hcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence            6688999999875  888888764   9999985321 1242 46888999999999777 5555 2346889999974

>PRK01029 tolB translocation protein TolB; Provisional

Probab=89.73  E-value=1.4  Score=42.38  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=44.8

Q ss_pred             eeEEEecCCCc-EEEeCC-C--CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C---cceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSL-D--GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D---TYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~-d--G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~---~~L~L~dt  100 (244)
                      ..+.+.+|+|. ||..+. +  ..|.+||..+++. +.+..+ ...+.+..+||||++|+.+. .   ..|.+||.
T Consensus       329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            46788999998 665544 3  3699999977643 322222 33577899999999998553 2   33777775

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.28  E-value=9.2  Score=38.88  Aligned_cols=122  Identities=11%  Similarity=0.102  Sum_probs=78.5

Q ss_pred             ccccCCCCceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeee
Q 044877           24 GHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLF  102 (244)
Q Consensus        24 ~k~Y~~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~  102 (244)
                      ++-|..   ..|+-.+. -|+|++++.|+.+-+|+....+ ...-...-..-+.++++||||+-++. .-..|.+||+.-
T Consensus        99 ~~h~~~---v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~-as~~ik~~~~~~  173 (541)
T KOG4547|consen   99 DKHYGN---VNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLT-ASRQIKVLDIET  173 (541)
T ss_pred             CCCCCc---ceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEe-ccceEEEEEccC
Confidence            445544   44565444 7789999999999999997554 22223445567899999999998754 446689999742


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCc-----cceeeeeeeeecCCCCcceEEE-EeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVN-----NKFHKAQFSWVTENGKQERHLV-ATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~-----~~Ft~akFn~~tg~~~~E~~Iv-tStG~fvvvWn~~k  176 (244)
                                           ...++      ++.||.     +.|+-. |+    +..++.+.. +-.+..+.+|=.++
T Consensus       174 ---------------------kevv~------~ftgh~s~v~t~~f~~~-~~----g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  174 ---------------------KEVVI------TFTGHGSPVRTLSFTTL-ID----GIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ---------------------ceEEE------EecCCCcceEEEEEEEe-cc----ccccceeeeccccccceeEEEEEc
Confidence                                 23555      677764     345433 32    122455554 34567778887766


Q ss_pred             -hhcCCc
Q 044877          177 -VKNGSH  182 (244)
Q Consensus       177 -V~~g~~  182 (244)
                       .+.+..
T Consensus       222 ~~kkks~  228 (541)
T KOG4547|consen  222 EDKKKSL  228 (541)
T ss_pred             ccccchh
Confidence             554444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=88.98  E-value=0.89  Score=47.74  Aligned_cols=57  Identities=18%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             cEEEeCCCCcEEEEeccccc-----------cceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           43 SIVVGSLDGKIRLYSSNSMR-----------QAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r-----------~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      ..+++|.||.+|+|-.....           .+-.+  -+.-||+..++|.||..|.+..++.|.+||..
T Consensus       471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s--y~k~~i~a~~fs~dGslla~s~~~~Itiwd~~  538 (792)
T KOG1963|consen  471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS--YHKTPITALCFSQDGSLLAVSFDDTITIWDYD  538 (792)
T ss_pred             eeEEeccCCeEEEEEEecccccCcCccceEEeeeec--cccCcccchhhcCCCcEEEEecCCEEEEecCC
Confidence            37899999999999873211           12222  25679999999999998888889999999964

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=88.73  E-value=1.3  Score=46.35  Aligned_cols=69  Identities=14%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      .--+|+-|+|.=.+=..+..+-+||...+.... .|.||.|.|-.|+.|.||+...+.. ++.+.+|..+.
T Consensus        15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llq-tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl   84 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ-PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL   84 (1081)
T ss_pred             hheeEECCCCceEEEecCCEEEEEeCCCccccc-ccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence            445789999982222345689999997766555 5799999999999999999998776 68899998764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.54  E-value=0.65  Score=47.62  Aligned_cols=65  Identities=20%  Similarity=0.239  Sum_probs=50.7

Q ss_pred             EecCCCcEEEeCCCCcEEEEecccc---c---cceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeee
Q 044877           37 ASTGDGSIVVGSLDGKIRLYSSNSM---R---QAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLF  102 (244)
Q Consensus        37 ats~~G~IavGS~dG~IRLyD~~~~---r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~  102 (244)
                      |.+.+...+++|.|.+++||..+..   +   ..+-+...|.-||.+|-+-.|-++| +.|+..|.|||-.+
T Consensus       743 AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~ScD~giHlWDPFi  813 (1034)
T KOG4190|consen  743 AIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-ASCDGGIHLWDPFI  813 (1034)
T ss_pred             hcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-eeccCcceeecccc
Confidence            3444546999999999999998621   1   1222346788999999999999998 88999999999755

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.98  E-value=0.6  Score=36.43  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      +.-|..+|.+--||..++ ..+.++.+|.-| .+|++|+||.+||.+=
T Consensus        30 ~le~~~~GRll~ydp~t~-~~~vl~~~L~fp-NGVals~d~~~vlv~E   75 (89)
T PF03088_consen   30 LLEGRPTGRLLRYDPSTK-ETTVLLDGLYFP-NGVALSPDESFVLVAE   75 (89)
T ss_dssp             HHHT---EEEEEEETTTT-EEEEEEEEESSE-EEEEE-TTSSEEEEEE
T ss_pred             eecCCCCcCEEEEECCCC-eEEEehhCCCcc-CeEEEcCCCCEEEEEe
Confidence            344666899999999886 477788888866 8999999999998663

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=87.75  E-value=17  Score=31.35  Aligned_cols=69  Identities=16%  Similarity=0.128  Sum_probs=44.8

Q ss_pred             CCCceeEEEecCCCcEEEeCCC---------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC-cceEE
Q 044877           29 RGTNFQCFASTGDGSIVVGSLD---------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD-TYLIL   97 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavGS~d---------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~-~~L~L   97 (244)
                      ..+.+.-++++++|.|.+++..         |.|-.++.. + .++....++.-| .+|+++|||++|..+ +. ..|.-
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~~~~~p-NGi~~s~dg~~lyv~ds~~~~i~~  160 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVADGLGFP-NGIAFSPDGKTLYVADSFNGRIWR  160 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEEEESSE-EEEEEETTSSEEEEEETTTTEEEE
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEecCcccc-cceEECCcchheeecccccceeEE
Confidence            3455778999999998887654         456666664 2 344444555443 799999999988644 43 55666


Q ss_pred             EEe
Q 044877           98 ICT  100 (244)
Q Consensus        98 ~dt  100 (244)
                      +|.
T Consensus       161 ~~~  163 (246)
T PF08450_consen  161 FDL  163 (246)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=87.36  E-value=3.3  Score=39.90  Aligned_cols=76  Identities=18%  Similarity=0.202  Sum_probs=56.4

Q ss_pred             eecccccccCCCCceeEEEecCCCc-EEEeCCC----------C-cEEEEeccccccceecCCCCCCCeeEEEeCCCCCE
Q 044877           19 LNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLD----------G-KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRW   86 (244)
Q Consensus        19 ~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~d----------G-~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~   86 (244)
                      +.|....++..    ..+|.++.|- ||+-..+          - .|++|+..+..-.+..++.  ++|.++.++.+.+.
T Consensus        21 m~W~~~~~l~~----~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~--~~iv~~~wt~~e~L   94 (410)
T PF04841_consen   21 MSWSLKDDLSD----YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS--GRIVGMGWTDDEEL   94 (410)
T ss_pred             CCCCccccccc----eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC--CCEEEEEECCCCeE
Confidence            56766544321    3456677544 7777555          2 5999999876666656665  89999999999999


Q ss_pred             EEEeCCcceEEEEe
Q 044877           87 ILGTTDTYLILICT  100 (244)
Q Consensus        87 lLaT~~~~L~L~dt  100 (244)
                      |+.+.+..++++|.
T Consensus        95 vvV~~dG~v~vy~~  108 (410)
T PF04841_consen   95 VVVQSDGTVRVYDL  108 (410)
T ss_pred             EEEEcCCEEEEEeC
Confidence            99999999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=86.96  E-value=1.9  Score=43.81  Aligned_cols=74  Identities=7%  Similarity=0.013  Sum_probs=52.1

Q ss_pred             cCCCCc-eeEEEecCCC--cEEEeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           27 FSRGTN-FQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        27 Y~~~~~-Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      |.+... .+++|.||.=  -+|++..||.|-+||++.... .-...+-...+...+.++++|+.|.+.-. ..+.+++.
T Consensus       437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            333444 8999999943  289999999999999963221 11123323556667778888999987765 66999886

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=86.83  E-value=0.84  Score=43.38  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=46.8

Q ss_pred             eeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCC-CCCCCeeEEEeCCCC-CEEEEeCC-cceEEEEee
Q 044877           33 FQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFP-GLGSPIRYVDVTYDG-RWILGTTD-TYLILICTL  101 (244)
Q Consensus        33 Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lp-glGdPI~~vdvS~DG-~~lLaT~~-~~L~L~dt~  101 (244)
                      +.|+-.++ .++ ||+||.|-.||+||.+++  .|-+++ .+|.-|--|.-+|-- .-||+.|+ +...+.+..
T Consensus       213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm--~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~  284 (339)
T KOG0280|consen  213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNM--GKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS  284 (339)
T ss_pred             eEEEecCCCCCceEEEeccccceeeeehhcc--cCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence            45777777 555 999999999999999754  343444 356666666655533 34568887 778888864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=86.37  E-value=2.9  Score=39.56  Aligned_cols=65  Identities=25%  Similarity=0.355  Sum_probs=51.7

Q ss_pred             eEEEecCCCc-EEEeCC---CCcEEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           34 QCFASTGDGS-IVVGSL---DGKIRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        34 t~vats~~G~-IavGS~---dG~IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      ..++.+++|. ++++..   ++.|-..|..+.+..++ .| .| .| .+++++|||+.+..+.  .+.|.++|+.
T Consensus       119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee-cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            4677888774 877777   78999999988776776 55 44 58 9999999999888665  5889999954

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=86.31  E-value=1.3  Score=27.58  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=19.0

Q ss_pred             CCCeeEEEeCCCCCEEE-EeCCcceEEE
Q 044877           72 GSPIRYVDVTYDGRWIL-GTTDTYLILI   98 (244)
Q Consensus        72 GdPI~~vdvS~DG~~lL-aT~~~~L~L~   98 (244)
                      |..|++|+.++.  |+. +|+..|||++
T Consensus         1 gE~i~aia~g~~--~vavaTS~~~lRif   26 (27)
T PF12341_consen    1 GEEIEAIAAGDS--WVAVATSAGYLRIF   26 (27)
T ss_pred             CceEEEEEccCC--EEEEEeCCCeEEec
Confidence            567888888865  777 4556999986

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=86.25  E-value=1.6  Score=46.75  Aligned_cols=70  Identities=23%  Similarity=0.284  Sum_probs=53.1

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcccccccc
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTKTGFNGR  116 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~~GF~~~  116 (244)
                      ||.|+.=|.|-.|+...-+..- .+-||-..|-+|..|-||+++++-++++ +|||+.--  .+--+..||-.+
T Consensus       148 i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s--~~~~~~~~fgHs  218 (967)
T KOG0974|consen  148 IASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS--REVLGCTGFGHS  218 (967)
T ss_pred             EEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeeccc--ccccCccccccc
Confidence            9999999999999986322222 3678999999999999999998888755 99998632  332234667654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=86.14  E-value=2.3  Score=44.67  Aligned_cols=89  Identities=21%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             cceeeecccCCCceecccccccC----------C--CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCC
Q 044877            6 GIVQNLANAGAPVLNWSQGHQFS----------R--GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLG   72 (244)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~k~Y~----------~--~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglG   72 (244)
                      |++-.++     |.+|.|.-.|-          +  +.+=-|+..-++|. +.+|+.||-+.+|.+.+.+ .-| +-...
T Consensus       191 G~~di~a-----V~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr-LGT-vg~~D  263 (1081)
T KOG1538|consen  191 GRNDILA-----VADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVR-LGT-VGEQD  263 (1081)
T ss_pred             CccceEE-----EEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeE-Eee-ccccc
Confidence            5555665     78898854431          1  22335777788997 9999999999999998775 333 33466


Q ss_pred             CCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           73 SPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        73 dPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      .=|..|.+-|+|+++...|. .+|--++..
T Consensus       264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  264 SWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             eeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            78999999999999999995 778766643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=85.03  E-value=2.8  Score=44.97  Aligned_cols=65  Identities=18%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEE
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILIC   99 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~d   99 (244)
                      .-++.++.+|. ||+-|.|-.||+|+.-+.+..--..-||-..|-.+.+.|+  .|++.. +-++++|+
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~  244 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG  244 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence            34677888887 9999999999999997665433223356678899999999  555555 57799994

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=84.78  E-value=6.5  Score=40.66  Aligned_cols=100  Identities=15%  Similarity=0.224  Sum_probs=67.6

Q ss_pred             CccccceeeecccCCCceeccccccc---------------CCCCc-eeEEEecCCCc-EEEeCCCCcEEEEecccc-cc
Q 044877            2 RDKNGIVQNLANAGAPVLNWSQGHQF---------------SRGTN-FQCFASTGDGS-IVVGSLDGKIRLYSSNSM-RQ   63 (244)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~k~Y---------------~~~~~-Ft~vats~~G~-IavGS~dG~IRLyD~~~~-r~   63 (244)
                      |-++|.||...+-.+...-......|               .++-. ++++++++.|. |++||.|+.+-+||.--. +-
T Consensus       563 ~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP  642 (733)
T KOG0650|consen  563 RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP  642 (733)
T ss_pred             hhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence            56789999887633322222222222               23333 78999999997 999999999999998422 22


Q ss_pred             ceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877           64 AKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        64 aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      -| .|--|-..|++|++.+-=-.+.+.++ +++.++...+
T Consensus       643 yk-~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V  681 (733)
T KOG0650|consen  643 YK-TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV  681 (733)
T ss_pred             hH-HhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence            34 35568889999999876665655565 6677777654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=84.34  E-value=2.1  Score=45.67  Aligned_cols=72  Identities=21%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEE
Q 044877           25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILIC   99 (244)
Q Consensus        25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~d   99 (244)
                      .+|++..-.+++.++|.|+ ++.|+.||.|+||.-...++.|.  =...-|=..+.+|.-|-+. +|++...+-|-
T Consensus         9 ~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski--~~~~~p~~nlv~tnhgl~~-~tsdrr~la~~   81 (1636)
T KOG3616|consen    9 RDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKI--CEEAKPKENLVFTNHGLVT-ATSDRRALAWK   81 (1636)
T ss_pred             CCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhh--hhhcCCccceeeeccceEE-Eeccchhheee
Confidence            4566666678999999998 99999999999999876665552  2355677778888877654 77776666664

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=83.17  E-value=14  Score=39.68  Aligned_cols=67  Identities=9%  Similarity=0.089  Sum_probs=52.3

Q ss_pred             eEEEecCCCc-EEEeCC---CCcEEEEeccccccceecCC--CCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           34 QCFASTGDGS-IVVGSL---DGKIRLYSSNSMRQAKTAFP--GLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        34 t~vats~~G~-IavGS~---dG~IRLyD~~~~r~aKt~lp--glGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .+++.-|.|. ||+...   +-+|-.|-+.+.|...=.||  .-+..|..|..++|+.-|+..+.+.|.||-+
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~  332 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTR  332 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEe
Confidence            3788889998 444433   47788999877776654455  4577999999999999998888888999986

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.92  E-value=2.4  Score=44.71  Aligned_cols=49  Identities=24%  Similarity=0.295  Sum_probs=37.2

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD   83 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D   83 (244)
                      |..=+.+.+|. +|++|.||.|-+....+.+ -.|.+. ++-||.+|+++||
T Consensus        74 ~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~d-f~rpiksial~Pd  123 (846)
T KOG2066|consen   74 FDHSSSILEGEYVASCSDDGKVVIGSLFTDD-EITQYD-FKRPIKSIALHPD  123 (846)
T ss_pred             ccccccccCCceEEEecCCCcEEEeeccCCc-cceeEe-cCCcceeEEeccc
Confidence            33333355676 9999999999998887765 333344 8999999999999

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=82.90  E-value=3  Score=40.53  Aligned_cols=57  Identities=18%  Similarity=0.137  Sum_probs=44.3

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL  101 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~  101 (244)
                      |-+.+.||.|.+||..... =...++.-.+++.+++.|||||.||-|+.  -.|.+|...
T Consensus        64 lC~~yk~~~vqvwsl~Qpe-w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~  122 (447)
T KOG4497|consen   64 LCVAYKDPKVQVWSLVQPE-WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN  122 (447)
T ss_pred             eeeeeccceEEEEEeecce-eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEec
Confidence            6677889999999996443 22235656689999999999999999985  558888753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=82.75  E-value=2.2  Score=43.69  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeee
Q 044877           41 DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLF  102 (244)
Q Consensus        41 ~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~  102 (244)
                      .|. |++||.||.--+|+..+++..+ .++|...-+..|.-.|+--.| ||+  +++|.||...-
T Consensus       635 rgeyiasgSddgr~fiwek~tg~i~a-v~~gdssivnciqghP~~~~l-atSgiDstiKIwsp~a  697 (758)
T KOG1310|consen  635 RGEYIASGSDDGRFFIWEKLTGSILA-VIHGDSSIVNCIQGHPRCPTL-ATSGIDSTIKIWSPEA  697 (758)
T ss_pred             CCCeeeEecCCCceEEeecCCcceEE-EeeCchhheeeccCCCCCcee-eeccCccceEEecccC
Confidence            444 9999999999999999887444 678888888888888887544 776  68899999654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.64  E-value=2  Score=39.92  Aligned_cols=51  Identities=20%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             CCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           48 SLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        48 S~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      |..+++-+||..+++ ++.+.+ ...++....+||||++|+-...+-|-+++.
T Consensus        20 s~~~~y~i~d~~~~~-~~~l~~-~~~~~~~~~~sP~g~~~~~v~~~nly~~~~   70 (353)
T PF00930_consen   20 SFKGDYYIYDIETGE-ITPLTP-PPPKLQDAKWSPDGKYIAFVRDNNLYLRDL   70 (353)
T ss_dssp             EEEEEEEEEETTTTE-EEESS--EETTBSEEEE-SSSTEEEEEETTEEEEESS
T ss_pred             ccceeEEEEecCCCc-eEECcC-CccccccceeecCCCeeEEEecCceEEEEC
Confidence            557889999998764 443333 378999999999999999988888999873

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=81.79  E-value=8.3  Score=37.28  Aligned_cols=72  Identities=17%  Similarity=0.082  Sum_probs=47.4

Q ss_pred             cCCCCceeEEEecCCCc--EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC----cceEE
Q 044877           27 FSRGTNFQCFASTGDGS--IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD----TYLIL   97 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~--IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~----~~L~L   97 (244)
                      +.+...-.....+|+|+  ++..|.+   ..|.++|..+++.-+  |-.........++||||++|+.+..    .-|-+
T Consensus       184 ~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  261 (419)
T PRK04043        184 IVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL  261 (419)
T ss_pred             EccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence            33333456788999996  6655554   469999987764332  2224455667889999999986542    23777


Q ss_pred             EEe
Q 044877           98 ICT  100 (244)
Q Consensus        98 ~dt  100 (244)
                      +|.
T Consensus       262 ~dl  264 (419)
T PRK04043        262 YDT  264 (419)
T ss_pred             EEC
Confidence            774

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=81.76  E-value=12  Score=35.57  Aligned_cols=66  Identities=14%  Similarity=0.137  Sum_probs=47.4

Q ss_pred             EEEecCCC-cEEEeCCCCcEEEEeccccc-----cceecCCCCCCCeeEEEeCCCCCE--EEEeC-CcceEEEEee
Q 044877           35 CFASTGDG-SIVVGSLDGKIRLYSSNSMR-----QAKTAFPGLGSPIRYVDVTYDGRW--ILGTT-DTYLILICTL  101 (244)
Q Consensus        35 ~vats~~G-~IavGS~dG~IRLyD~~~~r-----~aKt~lpglGdPI~~vdvS~DG~~--lLaT~-~~~L~L~dt~  101 (244)
                      |...++.. ..|+|+.||.+-+||.+.++     ..+ .-|.+...|....+|+-|-.  |+-+- -.++.+.|++
T Consensus       208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             eeeeccCcceEEEEecCCcEEEEEecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            56666644 49999999999999997544     223 24778899999999965532  22333 4888888875

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=81.68  E-value=5.3  Score=36.63  Aligned_cols=111  Identities=16%  Similarity=0.180  Sum_probs=63.4

Q ss_pred             cEEEeCCCCcEEEEeccccccceecCCCCCCCee-EEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCC
Q 044877           43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIR-YVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNK  120 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~-~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~  120 (244)
                      .+++|+.+|.|.+|-.-..-..--..+..-.+|. .|...-|+.+.++.|. +.|+.|++.+.  +   .+||.      
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k---~~g~~------  140 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--K---VLGYV------  140 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC--c---eeeee------
Confidence            5999999999999987421111112233334443 3455567777777775 66999998651  1   12222      


Q ss_pred             CCcceeeeeCccchhhcCCccceeee-eeeeecCCCCcceEEEE--eeCCeEEEEechhhhcCCcccc
Q 044877          121 IAAPRLLKLTPLDSHLAGVNNKFHKA-QFSWVTENGKQERHLVA--TVGKFSVIWNFQQVKNGSHECY  185 (244)
Q Consensus       121 kp~pr~L~L~Pe~~~~~G~~~~Ft~a-kFn~~tg~~~~E~~Ivt--StG~fvvvWn~~kV~~g~~~~y  185 (244)
                                       | .++|.+. .+-.+   +..|-+.++  |.+.-+=-||+++++......|
T Consensus       141 -----------------g-~h~~~~~e~~ivv---~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~i~~  187 (238)
T KOG2444|consen  141 -----------------G-QHNFESGEELIVV---GSDEFLKIADTSHDRVLKKWNVEKIKDESPISS  187 (238)
T ss_pred             -----------------c-cccCCCcceeEEe---cCCceEEeeccccchhhhhcchhhhhccCcchh
Confidence                             1 2344332 11111   223555555  6666666678999988877655

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=80.90  E-value=29  Score=38.56  Aligned_cols=156  Identities=17%  Similarity=0.221  Sum_probs=91.1

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-EeCCcceEEEEee---ec---
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTTDTYLILICTL---FT---  103 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~~~~L~L~dt~---~~---  103 (244)
                      ...++.+-.++. |.++...|+|-|-|..+..  -...--.-.-|..++.|||++|++ +|...+|+++...   |-   
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            577778777776 9999999999999885432  111223567899999999999998 5556777765541   10   


Q ss_pred             -cCCCCc-----cccccc---ccC--CCCCcceeeeeCccchhhcC-CccceeeeeeeeecCCCCcceEEE----EeeC-
Q 044877          104 -DKNGTT-----KTGFNG---RMG--NKIAAPRLLKLTPLDSHLAG-VNNKFHKAQFSWVTENGKQERHLV----ATVG-  166 (244)
Q Consensus       104 -~~~~~~-----~~GF~~---~~~--~~kp~pr~L~L~Pe~~~~~G-~~~~Ft~akFn~~tg~~~~E~~Iv----tStG-  166 (244)
                       +.+..+     +-||-+   -|.  .-+.++|--.   ++....+ ....=.+..-+| .|+  +|.+.|    .-+| 
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~---~~ek~~~~~~~~~~~~~IsW-RgD--g~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKI---EKEKALEQIEQDDHKTSISW-RGD--GEYFAVSFVESETGT  221 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccc---cccccccchhhccCCceEEE-ccC--CcEEEEEEEeccCCc
Confidence             111111     123333   121  1111111111   1112222 112222445678 444  677666    2456 


Q ss_pred             CeEEEEechhhhcCCccccccccCCceeeeeE
Q 044877          167 KFSVIWNFQQVKNGSHECYQNQEGLKSCYCYK  198 (244)
Q Consensus       167 ~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~  198 (244)
                      +-+-+||=+-.|+..-++   ++|+..|..++
T Consensus       222 RkirV~drEg~Lns~se~---~~~l~~~LsWk  250 (1265)
T KOG1920|consen  222 RKIRVYDREGALNSTSEP---VEGLQHSLSWK  250 (1265)
T ss_pred             eeEEEecccchhhcccCc---ccccccceeec
Confidence            899999999888877664   46777776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	5e-04
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	5e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	7e-04

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 25  HQFSRGTNFQCFASTGDGSIV-VGSLDGKIRLYSSNSMRQAKTAFP-GLGSPIRYVDVTY 82
           H       +       D  ++ + S DG + +Y+ +S  QA + FP    + I+ V    
Sbjct: 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD 224

Query: 83  DGRWILGTTDTYLIL 97
           +G W++   D  ++ 
Sbjct: 225 NGYWMVVECDQTVVC 239

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 5/69 (7%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 31  TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWIL- 88
              + F +     +V  +   ++ ++   ++ + +          +  + +  +   ++ 
Sbjct: 172 VRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL 231

Query: 89  GTTDTYLIL 97
           GTT   + +
Sbjct: 232 GTTRGIIDI 240

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 41  DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL 88
             + I+VGS D +IR+++ N+  +    F      IR + V     ++L
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVL 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.42
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.4
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.39
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.39
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.39
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.38
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.38
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.38
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.37
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.36
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.33
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.33
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.32
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.3
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.29
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.28
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.28
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.28
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.28
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.28
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.27
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.27
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.26
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.26
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.26
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.26
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.25
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.25
2pm7_B	297	Protein transport protein SEC13, protein transport	99.25
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.25
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.24
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.23
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.23
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.22
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.22
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.22
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.22
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.22
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.21
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.21
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.21
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.2
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.2
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.2
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.2
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.2
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.2
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.2
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.19
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.19
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.18
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.18
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.18
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.18
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.18
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.16
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.16
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.16
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.15
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.14
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.14
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.14
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.14
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.14
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.14
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.14
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.14
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.12
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.12
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.11
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.11
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.1
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.09
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.08
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.08
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.08
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.08
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.07
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.07
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.07
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.06
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.06
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.05
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.04
2pm7_B	297	Protein transport protein SEC13, protein transport	99.04
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.04
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.04
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.02
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.01
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.99
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	98.95
3jro_A	753	Fusion protein of protein transport protein SEC13	98.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.92
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.89
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.88
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.87
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.87
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.86
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.82
3jro_A	753	Fusion protein of protein transport protein SEC13	98.78
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.77
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.76
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.73
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.7
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.68
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.65
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.61
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.6
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.49
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.49
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.47
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.46
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.45
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.38
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.36
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.34
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.24
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.23
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.18
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.17
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.15
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.15
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.11
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.1
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.01
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.97
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.97
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.95
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.95
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.7
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.61
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.48
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.48
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.42
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.31
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.24
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.22
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.2
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.15
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.12
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.03
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.88
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.72
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.45
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.36
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.27
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.24
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.17
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.14
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	95.95
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.91
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.88
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.88
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	95.81
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.79
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.77
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.63
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.92
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.73
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	94.66
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	94.27
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	93.9
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	93.7
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	93.64
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	93.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	93.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	93.28
4a2l_A	795	BT_4663, two-component system sensor histidine kin	93.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	93.24
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	92.95
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	92.91
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	92.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	92.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.44
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	92.34
4a2l_A	795	BT_4663, two-component system sensor histidine kin	92.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	91.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	91.58
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	90.84
3v9f_A	781	Two-component system sensor histidine kinase/RESP	90.82
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	90.8
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	90.57
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	89.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	89.88
2qe8_A	343	Uncharacterized protein; structural genomics, join	89.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	89.36
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	88.87
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	88.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	88.19
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	86.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	86.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	86.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	85.77
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	83.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	83.07
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	81.57
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	80.72
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	80.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	80.27

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.42  E-value=3.4e-12  Score=111.84  Aligned_cols=132  Identities=14%  Similarity=0.193  Sum_probs=93.7

Q ss_pred             CCccccceeeecccCCCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEecccccc--ceecCCCCCCCeeE
Q 044877            1 MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ--AKTAFPGLGSPIRY   77 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~--aKt~lpglGdPI~~   77 (244)
                      |||..-+++++.           +|   ......+++++|+|. ||+||.||.||+||..+.+.  ...++.++..+|.+
T Consensus         1 ~~~~~~~~~~~~-----------~h---~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~   66 (345)
T 3fm0_A            1 MKDSLVLLGRVP-----------AH---PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRK   66 (345)
T ss_dssp             ---CEEEEEEEC-----------CS---TTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEE
T ss_pred             CCccEEEeeeec-----------CC---CCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEE
Confidence            666666666663           11   122578999999998 99999999999999865432  22345789999999


Q ss_pred             EEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCC
Q 044877           78 VDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGK  156 (244)
Q Consensus        78 vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~  156 (244)
                      |+++|||++|++.+ +.+++|||....                   ....+.      .+.|+....+...|+  +   .
T Consensus        67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~-------------------~~~~~~------~~~~h~~~v~~v~~s--p---~  116 (345)
T 3fm0_A           67 VAWSPCGNYLASASFDATTCIWKKNQD-------------------DFECVT------TLEGHENEVKSVAWA--P---S  116 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEECCC--------------------EEEEE------EECCCSSCEEEEEEC--T---T
T ss_pred             EEECCCCCEEEEEECCCcEEEEEccCC-------------------CeEEEE------EccCCCCCceEEEEe--C---C
Confidence            99999999999777 578999996320                   111222      344555555666776  3   2


Q ss_pred             cceEEEEeeCCeEEEEechh
Q 044877          157 QERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       157 ~E~~IvtStG~fvvvWn~~k  176 (244)
                      +..++++|.+..+.+||+..
T Consensus       117 ~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A          117 GNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             SSEEEEEETTSCEEEEEECT
T ss_pred             CCEEEEEECCCeEEEEECCC
Confidence            57889999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.40  E-value=2.6e-12  Score=110.38  Aligned_cols=113  Identities=9%  Similarity=0.167  Sum_probs=88.9

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~  108 (244)
                      ..+++++++|+|. ||+|+.||.|||||..+++..+ .+.++..||..+.++|||++|++.+. ..|++||..-      
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~------   86 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR-SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT------   86 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT------
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE-EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC------
Confidence            4589999999998 9999999999999998776555 46789999999999999999998874 7799999631      


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                     .+.+.      .+.+|.-..+...|+  +   .+..++++|.+..|.+||++.
T Consensus        87 ---------------~~~~~------~~~~h~~~v~~~~~~--~---~~~~l~sgs~D~~v~lWd~~~  128 (304)
T 2ynn_A           87 ---------------GEKVV------DFEAHPDYIRSIAVH--P---TKPYVLSGSDDLTVKLWNWEN  128 (304)
T ss_dssp             ---------------CCEEE------EEECCSSCEEEEEEC--S---SSSEEEEEETTSCEEEEEGGG
T ss_pred             ---------------CcEEE------EEeCCCCcEEEEEEc--C---CCCEEEEECCCCeEEEEECCC
Confidence                           11222      234454444555676  2   257889999999999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.39  E-value=8.8e-13  Score=117.49  Aligned_cols=71  Identities=15%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      ...++|++++|+|. ||+||.||.|||||..+++..++.+.+|.++|++|+|||||++|++.+ +++|+|||.
T Consensus       269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            34589999999998 999999999999999988878878899999999999999999999777 688999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.39  E-value=5.1e-12  Score=110.42  Aligned_cols=112  Identities=13%  Similarity=0.164  Sum_probs=88.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ..+.++++++|+|. ||+||.||.||+||..+.+... .+.++..+|.+|+++|||++|++++ +.+|+|||..      
T Consensus       206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~------  278 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG-TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG------  278 (321)
T ss_dssp             SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT------
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE-EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC------
Confidence            34688999999997 9999999999999998776555 5788999999999999999999777 5789999963      


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                                     ..++++      .+.++.-......|+  +   .+..+++++.+..+.+||.
T Consensus       279 ---------------~~~~~~------~~~~h~~~v~~v~~s--~---~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          279 ---------------TRTCVH------TFFDHQDQVWGVKYN--G---NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ---------------TTEEEE------EECCCSSCEEEEEEC--T---TSSEEEEEETTCCEEEEEC
T ss_pred             ---------------CCEEEE------EEcCCCCcEEEEEEC--C---CCCEEEEEeCCCeEEEEeC
Confidence                           123333      344554445556776  2   2578999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.39  E-value=3.7e-12  Score=113.52  Aligned_cols=116  Identities=14%  Similarity=0.118  Sum_probs=88.0

Q ss_pred             CCceeEEEecCCCcEEEeCCCCcEEEEeccccccc---eecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877           30 GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQA---KTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~a---Kt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      ....+++++++++.|++||.||.|||||..+++..   +..+.+|.++|.+|+++|||++|++.+ +.+|+|||..    
T Consensus        82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~----  157 (344)
T 4gqb_B           82 EAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA----  157 (344)
T ss_dssp             SSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----
T ss_pred             CCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC----
Confidence            34589999999999999999999999999765533   223457899999999999999999777 5789999963    


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                       ..+.++      .+.||.-.-+...|+.    +....++++|.+..|.+||++.
T Consensus       158 -----------------~~~~~~------~~~~h~~~V~~~~~~~----~~~~~l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          158 -----------------QQVVLS------SYRAHAAQVTCVAASP----HKDSVFLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             -----------------TTEEEE------EECCCSSCEEEEEECS----SCTTEEEEEETTSCEEEEETTS
T ss_pred             -----------------CCcEEE------EEcCcCCceEEEEecC----CCCCceeeeccccccccccccc
Confidence                             123344      4556655556667762    1134567888899999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.38  E-value=6.5e-12  Score=109.74  Aligned_cols=114  Identities=18%  Similarity=0.362  Sum_probs=88.4

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~  107 (244)
                      ....++++++|+|. ||+|+.||.||+||..+++... .+.++..||.+|+++|||++|++.+. .+|+|||..-     
T Consensus       164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-----  237 (321)
T 3ow8_A          164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH-TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-----  237 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-----
T ss_pred             CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-----
Confidence            34578999999998 9999999999999998876555 47889999999999999999998875 7799999631     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      ...+.      .+.|+.-..+...|+  +   .++.++++|.+..+.+||++.
T Consensus       238 ----------------~~~~~------~~~~h~~~v~~~~~s--p---~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          238 ----------------ANLAG------TLSGHASWVLNVAFC--P---DDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             ----------------CCEEE------EECCCSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTT
T ss_pred             ----------------cceeE------EEcCCCCceEEEEEC--C---CCCEEEEEeCCCcEEEEeCCC
Confidence                            11122      233444444455666  2   257899999999999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=6.7e-12  Score=109.05  Aligned_cols=121  Identities=15%  Similarity=0.201  Sum_probs=85.1

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCC-CCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPG-LGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpg-lGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~  107 (244)
                      ...++|++++|+|. ||+|+.||.||+||..+++.....+++ +..+|++|+++|||++|++++++.|+|||..-.    
T Consensus       170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~----  245 (343)
T 3lrv_A          170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKD----  245 (343)
T ss_dssp             SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSS----
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCC----
Confidence            34589999999998 899999999999999887655234676 999999999999999999998889999997420    


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEee-CCeEEEEechhh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATV-GKFSVIWNFQQV  177 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtSt-G~fvvvWn~~kV  177 (244)
                                    ...+.++....|....+.    +...|+  +   .++.+++++. +.-+.+|++++-
T Consensus       246 --------------~~~~~~~~~~~~~~~~~~----~~~~~~--~---~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          246 --------------VGTLAYPTYTIPEFKTGT----VTYDID--D---SGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             --------------TTCBSSCCCBC-----CC----EEEEEC--T---TSSEEEEEETTTTEEEEEEECTT
T ss_pred             --------------Ccceeecccccccccccc----eEEEEC--C---CCCEEEEecCCCCcEEEEEEccc
Confidence                          011122211111111111    223454  2   2577777777 999999999653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.38  E-value=5.1e-12  Score=113.73  Aligned_cols=114  Identities=12%  Similarity=0.159  Sum_probs=91.0

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ..+.+|++++|+|. +|+||.||.||+||..+++..+ .+.++.++|.+|+++|||++|++.+ +.+|+|||..-     
T Consensus       108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-----  181 (410)
T 1vyh_C          108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-----  181 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-----
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----
Confidence            45689999999987 9999999999999998876555 5789999999999999999998776 57899999621     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      ...++      .+.|+....+...|+  +   .+..++++|.+..+.+||++.
T Consensus       182 ----------------~~~~~------~~~~h~~~V~~v~~~--p---~~~~l~s~s~D~~i~~wd~~~  223 (410)
T 1vyh_C          182 ----------------FECIR------TMHGHDHNVSSVSIM--P---NGDHIVSASRDKTIKMWEVQT  223 (410)
T ss_dssp             ----------------SCEEE------CCCCCSSCEEEEEEC--S---SSSEEEEEETTSEEEEEETTT
T ss_pred             ----------------CceeE------EEcCCCCCEEEEEEe--C---CCCEEEEEeCCCeEEEEECCC
Confidence                            12333      344565555666776  2   257899999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.37  E-value=6e-12  Score=114.86  Aligned_cols=112  Identities=23%  Similarity=0.316  Sum_probs=83.9

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ....+|+|++|+|. ||+||.||.||+||. +++..+ .|.+|..+|++|++||||++|++.+ +.+|+|||..     +
T Consensus        16 ~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~-~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-----~   88 (577)
T 2ymu_A           16 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----G   88 (577)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----S
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE-EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-----C
Confidence            45689999999998 999999999999996 455566 4789999999999999999998776 4779999941     1


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                       ++++      .+.|+.-.-+...|+  +   .+..+++++.+..+.+|+...
T Consensus        89 -----------------~~~~------~~~~~~~~v~~~~~s--~---d~~~l~~~~~d~~~~~~~~~~  129 (577)
T 2ymu_A           89 -----------------QLLQ------TLTGHSSSVRGVAFS--P---DGQTIASASDDKTVKLWNRNG  129 (577)
T ss_dssp             -----------------CEEE------EECCCSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTC
T ss_pred             -----------------CEEE------EEECCCCCEEEEEEC--C---CCCEEEEEcCCCceeeccccc
Confidence                             1222      233333333445665  2   257788888888999998643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.36  E-value=6.1e-12  Score=108.08  Aligned_cols=117  Identities=18%  Similarity=0.186  Sum_probs=90.4

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      ...+..+++++++|. ||+||.||.||+||..+++... .+.++.++|.+|+++|||++|++.+ +.+|+|||..-    
T Consensus        54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~----  128 (304)
T 2ynn_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----  128 (304)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG----
T ss_pred             cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE-EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC----
Confidence            345689999999987 9999999999999998876555 4788999999999999999999777 57899999631    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      .....+      .+.|+....+...|+  +  .....++++|.+..+.+||+..
T Consensus       129 ----------------~~~~~~------~~~~h~~~v~~v~~~--p--~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          129 ----------------NWALEQ------TFEGHEHFVMCVAFN--P--KDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             ----------------TTEEEE------EECCCCSCEEEEEEC--T--TCTTEEEEEETTSEEEEEETTC
T ss_pred             ----------------Ccchhh------hhcccCCcEEEEEEC--C--CCCCEEEEEeCCCeEEEEECCC
Confidence                            001122      234555545566776  3  1257889999999999999854

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.33  E-value=2.5e-11  Score=100.42  Aligned_cols=127  Identities=12%  Similarity=0.043  Sum_probs=88.4

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccc---cceecCCCCCCCeeEEEeCC--CCCEEEEeC-CcceEEEEeee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR---QAKTAFPGLGSPIRYVDVTY--DGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r---~aKt~lpglGdPI~~vdvS~--DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      ...++|++++++|. ||+|+.||.||+||..+..   .....+.++..+|++|+++|  ||++|++.+ +.+|++||...
T Consensus        11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~   90 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP   90 (351)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred             ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence            34689999999997 9999999999999987542   12234578999999999999  799998777 57899999753


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                      .....            .....+.+.      .+.++.-..+...|+  +. ..+..+++++.+..+.+||++.-
T Consensus        91 ~~~~~------------~~~~~~~~~------~~~~~~~~v~~~~~~--~~-~~~~~l~~~~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           91 DQEEC------------SGRRWNKLC------TLNDSKGSLYSVKFA--PA-HLGLKLACLGNDGILRLYDALEP  144 (351)
T ss_dssp             TSCTT------------SSCSEEEEE------EECCCSSCEEEEEEC--CG-GGCSEEEEEETTCEEEEEECSST
T ss_pred             Ccccc------------cccCcceee------eecccCCceeEEEEc--CC-CCCcEEEEecCCCcEEEecCCCh
Confidence            11000            001112232      233444445556676  21 11467888899999999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.33  E-value=2.4e-11  Score=103.17  Aligned_cols=114  Identities=17%  Similarity=0.231  Sum_probs=87.1

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ....++++++|+|. ||+|+.||.||+||...++..+ .+.++..+|.+++++|||++|++.+ +..|++||..-     
T Consensus        23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-----   96 (312)
T 4ery_A           23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-----   96 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----
T ss_pred             CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch-hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC-----
Confidence            35689999999998 9999999999999998776555 5688999999999999999999777 47799999631     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      .+.++      .+.++........|+  +   .+..+++++.+..+.+||++.
T Consensus        97 ----------------~~~~~------~~~~~~~~v~~~~~~--~---~~~~l~s~~~d~~i~iwd~~~  138 (312)
T 4ery_A           97 ----------------GKCLK------TLKGHSNYVFCCNFN--P---QSNLIVSGSFDESVRIWDVKT  138 (312)
T ss_dssp             ----------------CCEEE------EEECCSSCEEEEEEC--S---SSSEEEEEETTSCEEEEETTT
T ss_pred             ----------------CcEEE------EEcCCCCCEEEEEEc--C---CCCEEEEEeCCCcEEEEECCC
Confidence                            11222      223333333444565  2   257888999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.32  E-value=1e-11  Score=113.28  Aligned_cols=110  Identities=25%  Similarity=0.360  Sum_probs=86.1

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      -...+++++++|+|. ||+|+.||.||+||. +++..+ .++++.++|++|++||||++|++.+ +..|+|||..     
T Consensus       466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-----  538 (577)
T 2ymu_A          466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----  538 (577)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEE-EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE-EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-----
Confidence            345689999999998 999999999999996 445555 4788999999999999999998777 4779999931     


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      +                 ++++      .+.||.-.-+...|+  + +  ++.++++|.+..+.+||
T Consensus       539 ~-----------------~~~~------~~~~h~~~v~~~~fs--~-d--g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          539 G-----------------QLLQ------TLTGHSSSVWGVAFS--P-D--GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             S-----------------CEEE------EEECCSSCEEEEEEC--T-T--SSCEEEEETTSCEEEEC
T ss_pred             C-----------------CEEE------EEcCCCCCEEEEEEc--C-C--CCEEEEEeCCCEEEEeC
Confidence            1                 1233      345655555666776  2 2  57888999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.30  E-value=3.3e-11  Score=107.34  Aligned_cols=117  Identities=10%  Similarity=0.084  Sum_probs=82.8

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEeeeccCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICTLFTDKN  106 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt~~~~~~  106 (244)
                      ...++|++++++|. ||+||.||.||+||..+++..+ .+.+|.++|.++++++||..+|++ + +.+|+|||..-.  +
T Consensus       127 ~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~-~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~--~  203 (344)
T 4gqb_B          127 DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS-SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP--K  203 (344)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS--S
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcCcCCceEEEEecCCCCCceeeecccccccccccccc--c
Confidence            45689999999998 9999999999999998876555 578999999999999999766544 3 588999997420  0


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                     +. +.+.       ..++....+...|+  +  .....+++++.+..|.+||++.
T Consensus       204 ---------------~~-~~~~-------~~~~~~~~~~~~~~--p--~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          204 ---------------PA-SQIG-------CSAPGYLPTSLAWH--P--QQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             ---------------CE-EECC-----------CCCEEEEEEC--S--SCTTEEEEEETTSEEEEEESCC
T ss_pred             ---------------ee-eeee-------cceeeccceeeeec--C--CCCcceEEeccCCcEEEEECCC
Confidence                           11 1111       11112222334554  2  2245667788899999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.29  E-value=3e-11  Score=101.91  Aligned_cols=116  Identities=12%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             CCceeEEEecCC---Cc-EEEeCCCCcEEEEeccc-cccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           30 GTNFQCFASTGD---GS-IVVGSLDGKIRLYSSNS-MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        30 ~~~Ft~vats~~---G~-IavGS~dG~IRLyD~~~-~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      ...++|++++++   |. ||+|+.||.|++||..+ .+.....+.++..+|++|+++|||++|++.+ +..|++||..- 
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-  117 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-  117 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-
Confidence            456999999998   56 99999999999999975 4444346788999999999999999999777 57799999631 


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                          ...++       +.++....+...|...   ..+..+++++.+..+.+||++.
T Consensus       118 --------------------~~~~~-------~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A          118 --------------------NQAIQ-------IAQHDAPVKTIHWIKA---PNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             --------------------TEEEE-------EEECSSCEEEEEEEEC---SSCEEEEEEETTSEEEEECSSC
T ss_pred             --------------------CCcee-------eccccCceEEEEEEeC---CCCCEEEEccCCCcEEEEECCC
Confidence                                11122       1123333444455311   2246678888888899998864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.28  E-value=8.6e-11  Score=102.32  Aligned_cols=70  Identities=23%  Similarity=0.240  Sum_probs=61.8

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ..+++++++++|. +|+||.||.||+||..+++..+ .+.++.++|.+|+++|||++|++.+ +..|+|||..
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE-EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            4589999999987 8999999999999998876555 4688999999999999999999776 5889999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.28  E-value=3.8e-11  Score=108.02  Aligned_cols=113  Identities=12%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~  108 (244)
                      ...++++++++|. +|+||.||.||+||..+.++.+ .+.++..+|.+|+++|||++|++.+ +.+|++||..-      
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~-~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~------  223 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR-TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT------  223 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT------
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC------
Confidence            4589999999997 9999999999999998776555 5789999999999999999999776 58899999631      


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                     ...++      .+.|+........|+  .   .+..+++++.+..+.+||+..
T Consensus       224 ---------------~~~~~------~~~~h~~~v~~~~~~--~---~g~~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          224 ---------------GYCVK------TFTGHREWVRMVRPN--Q---DGTLIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             ---------------CCEEE------EEECCSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTT
T ss_pred             ---------------CcEEE------EEeCCCccEEEEEEC--C---CCCEEEEEcCCCeEEEEECCC
Confidence                           11222      233444333444565  2   257888899999999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.28  E-value=5.1e-11  Score=103.22  Aligned_cols=118  Identities=21%  Similarity=0.265  Sum_probs=85.1

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ....++++++++|. ||+||.||.||+||..+++..+ .+.++..+|.+|+++|||++|++.+ +.+|+|||..     +
T Consensus        65 ~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-----~  138 (319)
T 3frx_A           65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-----G  138 (319)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-----S
T ss_pred             cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE-EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-----C
Confidence            34589999999997 9999999999999998876555 4688999999999999999999887 5789999962     1


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeec-CCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVT-ENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~t-g~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                       ..+.      .+.|+........|.... .......+++++.+..+.+||++.
T Consensus       139 -----------------~~~~------~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  185 (319)
T 3frx_A          139 -----------------QCLA------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ  185 (319)
T ss_dssp             -----------------CEEE------EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT
T ss_pred             -----------------CeEE------EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc
Confidence                             1111      122333222333443110 001245788999999999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.28  E-value=5.3e-11  Score=103.61  Aligned_cols=118  Identities=13%  Similarity=0.173  Sum_probs=81.4

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccc------cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR------QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r------~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ...+++++++|+|. ||+||.||.|||||.....      .....+.++.++|.+|+++|||++|++.+ +.+|+|||..
T Consensus        58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            44689999999998 9999999999999984211      12224688999999999999999998777 5889999973


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      ..   +              ...+.++      .+.++....+...|+  +   .+..++++|.+..+.+||..
T Consensus       138 ~~---~--------------~~~~~~~------~~~~h~~~v~~v~~~--p---~~~~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          138 ES---G--------------EEYECIS------VLQEHSQDVKHVIWH--P---SEALLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             TT---C--------------CCCEEEE------EECCCSSCEEEEEEC--S---SSSEEEEEETTSCEEEEEEE
T ss_pred             CC---C--------------CCeEEEE------EeccCCCceEEEEEC--C---CCCEEEEEcCCCeEEEEECC
Confidence            10   0              0112233      233454445556776  2   25788889999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.28  E-value=5e-11  Score=107.34  Aligned_cols=115  Identities=15%  Similarity=0.078  Sum_probs=80.7

Q ss_pred             CceeEEEecC-CCc-EEEeCCCCcEEEEeccccccc-eecCCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEeeeccC
Q 044877           31 TNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        31 ~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      ..++|++++| ++. ||+||.||.|+|||..+.... ...+.+|.++|++|+++| ||++|++++ +.+|+|||..-   
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~---  196 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG---  196 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS---
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC---
Confidence            3489999999 555 999999999999998655432 223568999999999997 799998877 58899999621   


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                       +               ..+.+.  .    .......+....|+  .   .+..+++++.+..|.+||++
T Consensus       197 -~---------------~~~~~~--~----~~~~~~~~~~~~~~--~---~~~~l~~g~~dg~i~~wd~~  239 (435)
T 4e54_B          197 -N---------------ILRVFA--S----SDTINIWFCSLDVS--A---SSRMVVTGDNVGNVILLNMD  239 (435)
T ss_dssp             -C---------------EEEEEE--C----CSSCSCCCCCEEEE--T---TTTEEEEECSSSBEEEEESS
T ss_pred             -C---------------ceeEEe--c----cCCCCccEEEEEEC--C---CCCEEEEEeCCCcEeeeccC
Confidence             0               111111  0    11122233344555  2   25788889999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=8.4e-11  Score=102.13  Aligned_cols=116  Identities=10%  Similarity=0.022  Sum_probs=83.1

Q ss_pred             CceeEEEecC--CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           31 TNFQCFASTG--DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        31 ~~Ft~vats~--~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      .++.+++++|  +|. +|+||.||.||+||..+++..++....++.+|.+++++|||++|++.+ +..|+|||..-.   
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~---  202 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP---  202 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT---
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---
Confidence            5699999999  887 899999999999999877765544456777999999999999998766 588999997420   


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                    ++.+..++.        +|.-..+...|+  +   .+..+++++ +..+.+||+++-
T Consensus       203 --------------~~~~~~~~~--------~h~~~v~~l~fs--~---~g~~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          203 --------------DQASSRFPV--------DEEAKIKEVKFA--D---NGYWMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             --------------TSCCEECCC--------CTTSCEEEEEEC--T---TSSEEEEEE-SSBEEEEETTSS
T ss_pred             --------------CCCccEEec--------cCCCCEEEEEEe--C---CCCEEEEEe-CCeEEEEEcCCC
Confidence                          011122221        133334455776  2   245666666 559999999764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.27  E-value=7.4e-11  Score=100.11  Aligned_cols=116  Identities=27%  Similarity=0.347  Sum_probs=85.0

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ..+.++++++++|. +++|+.||.|++||..+.+..++.......+|..++++|||++|++++ +..|+|||..-     
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----  223 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-----  223 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT-----
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-----
Confidence            45689999999997 999999999999999887766766677888999999999999999877 57799999631     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCc--cceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVN--NKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~--~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      .+.++      .+.++.  .....+.|.  .  ..++.+++++.+..+.+||++.
T Consensus       224 ----------------~~~~~------~~~~~~~~~~~~~~~~~--~--~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          224 ----------------GKCLK------TYTGHKNEKYCIFANFS--V--TGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             ----------------TEEEE------EECSSCCSSSCCCEEEE--C--SSSCEEEECCTTSCEEEEETTT
T ss_pred             ----------------CcEEE------EEEecCCceEEEEEEEE--e--CCCcEEEEECCCCEEEEEECCC
Confidence                            11222      122221  111122343  1  1256788888999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.26  E-value=7.6e-11  Score=102.78  Aligned_cols=115  Identities=15%  Similarity=0.128  Sum_probs=86.2

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ....++++++|+|. +++|+.||.||+||..+.+..+ .+.++..+|.+|+++|||++|++.+ +.+|+|||..-     
T Consensus       184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-----  257 (340)
T 1got_B          184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-----  257 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE-EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-----
Confidence            34689999999997 9999999999999998776555 4688999999999999999999777 57899999631     


Q ss_pred             CcccccccccCCCCCcceeee-eCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLK-LTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~-L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      ...+. +..     .+.....+...|+  +   .+..+++++.+..+.+||+.+
T Consensus       258 ----------------~~~~~~~~~-----~~~~~~v~~~~~s--~---~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          258 ----------------DQELMTYSH-----DNIICGITSVSFS--K---SGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             ----------------TEEEEEECC-----TTCCSCEEEEEEC--T---TSSEEEEEETTSEEEEEETTT
T ss_pred             ----------------CcEEEEEcc-----CCcccceEEEEEC--C---CCCEEEEECCCCeEEEEEccc
Confidence                            01111 110     0111234455676  2   267899999999999999754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.26  E-value=6.1e-11  Score=103.41  Aligned_cols=113  Identities=14%  Similarity=0.169  Sum_probs=87.9

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT  109 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~  109 (244)
                      ...+|+++++++.|++||.||.||+||..+++... .+.++..+|.+++++|||+++++.+ +.+|+|||..-       
T Consensus       144 ~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-------  215 (340)
T 1got_B          144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-------  215 (340)
T ss_dssp             SCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------
T ss_pred             ccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-------
Confidence            45789999999999999999999999998776555 5788999999999999999998776 68899999631       


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                    ...++      .+.++....+...|+  +   .+..++++|.+..+.+||++.
T Consensus       216 --------------~~~~~------~~~~h~~~v~~v~~~--p---~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          216 --------------GMCRQ------TFTGHESDINAICFF--P---NGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             --------------CSEEE------EECCCSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTT
T ss_pred             --------------CeeEE------EEcCCcCCEEEEEEc--C---CCCEEEEEcCCCcEEEEECCC
Confidence                          11122      233444444555676  2   257899999999999999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.26  E-value=5.6e-11  Score=100.04  Aligned_cols=120  Identities=13%  Similarity=0.140  Sum_probs=85.9

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGT  108 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~  108 (244)
                      ...++|++++|+|. ||+|+.||.||+||..+.+..+. ++ .+++|..+.++|++.++.++.+..|+|||..-    + 
T Consensus       215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~----~-  287 (340)
T 4aow_A          215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT-LD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEG----K-  287 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-EE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTT----T-
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee-ec-CCceEEeeecCCCCceeeccCCCEEEEEECCC----C-
Confidence            34689999999997 99999999999999987765553 34 57899999999999998888889999999631    0 


Q ss_pred             cccccccccCCCCCcceeeeeCccc--hhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLD--SHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~--~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                     ...-.++++-  ....++....+...|+  +   .++.+++++.+..|.+||++.
T Consensus       288 ---------------~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~---dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          288 ---------------IIVDELKQEVISTSSKAEPPQCTSLAWS--A---DGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             ---------------EEEEEECCC-------CCCCCEEEEEEC--T---TSSEEEEEETTSCEEEEEEEC
T ss_pred             ---------------eEEEeccccceeeeccCCCCCEEEEEEC--C---CCCEEEEEeCCCEEEEEeCCC
Confidence                           0011111111  1223444445556676  2   257889999999999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.26  E-value=7.6e-11  Score=103.23  Aligned_cols=118  Identities=12%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccc-cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR-QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      ...+++++++|+|. ||+||.||.|++||..... .....+.++..+|.+|+++|||++|++.+ +.+|+|||..-.   
T Consensus        61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~---  137 (345)
T 3fm0_A           61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE---  137 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT---
T ss_pred             CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC---
Confidence            34689999999997 9999999999999986542 12335789999999999999999998776 578999997420   


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                     .....+.      .+.++....+...|+  +   .++.++++|.+..+.+||++.
T Consensus       138 ---------------~~~~~~~------~~~~h~~~v~~~~~~--p---~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          138 ---------------DEYECVS------VLNSHTQDVKHVVWH--P---SQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             ---------------SCEEEEE------EECCCCSCEEEEEEC--S---SSSCEEEEETTSCEEEEEEET
T ss_pred             ---------------CCeEEEE------EecCcCCCeEEEEEC--C---CCCEEEEEeCCCcEEEEEecC
Confidence                           0112222      223333334445665  2   257889999999999999763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.25  E-value=8e-11  Score=104.27  Aligned_cols=116  Identities=16%  Similarity=0.130  Sum_probs=80.0

Q ss_pred             CCceeEEEecCCCcEEEeCCCCcEEEEeccccccc---eecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877           30 GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQA---KTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~a---Kt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      ...+++++++++|.+++|+.||.|||||..+++..   +..+.++.++|.+|+++|||++|++.+ +..|+|||..-   
T Consensus        94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~---  170 (357)
T 4g56_B           94 EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---  170 (357)
T ss_dssp             SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---
T ss_pred             CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC---
Confidence            34589999999999999999999999998765422   222347889999999999999999776 57899999631   


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                        +..+.      .+.++.-..+...|+  .  +....+++++.+..+.+||++.
T Consensus       171 ------------------~~~~~------~~~~h~~~v~~v~~s--~--~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          171 ------------------KAVLK------SYNAHSSEVNCVAAC--P--GKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             ------------------TEEEE------EECCCSSCEEEEEEC--T--TCSSCEEEEETTSCEEECCTTS
T ss_pred             ------------------CcEEE------EEcCCCCCEEEEEEc--c--CCCceeeeeccCCceEEEECCC
Confidence                              12222      233444344455676  2  2245678888899999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1e-10  Score=101.82  Aligned_cols=119  Identities=10%  Similarity=0.110  Sum_probs=85.8

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccc-cc--cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS-MR--QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~-~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      ...+++++++|+|. ||+||.||.||+||... .+  .....+.++..+|.+|+++|||++|++.+ +.+|+|||..-  
T Consensus       107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~--  184 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD--  184 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET--
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC--
Confidence            34689999999997 99999999999999842 11  12224688999999999999999998777 58899999641  


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                       .....++      .+.||...-....|+.   .+....++++|.+..|.+||+..
T Consensus       185 -----------------~~~~~~~------~~~~h~~~v~~~~~~~---~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          185 -----------------DDWECVA------VLNGHEGTVWSSDFDK---TEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             -----------------TEEEEEE------EECCCSSCEEEEEECC---SSSSCEEEEEETTSCEEEEEEEE
T ss_pred             -----------------CCeeEEE------EccCCCCcEEEEEecC---CCCeeEEEEEeCCCeEEEEEecC
Confidence                             0112333      3445544444556762   12245788899999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.25  E-value=8.9e-11  Score=100.49  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEecccc--ccceecCCCCCCCeeEEEeCCC--CCEEEEeC-CcceEEEEeeecc
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSM--RQAKTAFPGLGSPIRYVDVTYD--GRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~--r~aKt~lpglGdPI~~vdvS~D--G~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      ..+++++++++|. ||+||.||.|||||..+.  +... .|.+|.++|.+|+++++  |++|++.+ +.+|+|||..-  
T Consensus        10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~-~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~--   86 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID-TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN--   86 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE-EECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS--
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE-EEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC--
Confidence            4588999999998 999999999999998532  3333 57899999999999974  89988766 58899999731  


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                        +               ....+.      .+.++........|+  + ...+..++++|.+..+.+||++.
T Consensus        87 --~---------------~~~~~~------~~~~h~~~v~~v~~~--p-~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           87 --G---------------RWSQIA------VHAVHSASVNSVQWA--P-HEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             --S---------------CBCCCE------EECCCSSCEEEEEEC--C-GGGCSEEEEEETTSEEEEEEBCS
T ss_pred             --C---------------ceEEEE------EeecCCCceeEEEeC--c-CCCCcEEEEEECCCcEEEEEecC
Confidence              0               001111      123344444555666  2 11246889999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.25  E-value=1e-10  Score=101.89  Aligned_cols=113  Identities=15%  Similarity=0.227  Sum_probs=85.2

Q ss_pred             CceeEEEe-----cC-CCc-EEEeCCCCcEEEEeccccc------cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceE
Q 044877           31 TNFQCFAS-----TG-DGS-IVVGSLDGKIRLYSSNSMR------QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLI   96 (244)
Q Consensus        31 ~~Ft~vat-----s~-~G~-IavGS~dG~IRLyD~~~~r------~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~   96 (244)
                      ...+|+++     ++ +|. ||+||.||.||+||....+      .....+.+|.++|.+|+++|||++|++.+ +.+|+
T Consensus        22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~  101 (343)
T 2xzm_R           22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR  101 (343)
T ss_dssp             SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred             hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence            45899998     66 776 9999999999999985321      12235788999999999999999998777 58899


Q ss_pred             EEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877           97 LICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus        97 L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      |||..-                     .+.++      .+.|+....+...|+  +   .+..+++++.+..+.+||+.
T Consensus       102 lwd~~~---------------------~~~~~------~~~~h~~~v~~v~~s--p---~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R          102 LWDLRT---------------------GTTYK------RFVGHQSEVYSVAFS--P---DNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EEETTS---------------------SCEEE------EEECCCSCEEEEEEC--S---STTEEEEEETTSCEEEEESS
T ss_pred             EEECCC---------------------CcEEE------EEcCCCCcEEEEEEC--C---CCCEEEEEcCCCEEEEEecc
Confidence            999631                     11222      344555555566776  2   25788999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.24  E-value=7.7e-11  Score=104.37  Aligned_cols=114  Identities=10%  Similarity=0.084  Sum_probs=83.3

Q ss_pred             CCceeEEEecCCC-c-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEE-eC-CcceEEEEeeeccC
Q 044877           30 GTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILG-TT-DTYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLa-T~-~~~L~L~dt~~~~~  105 (244)
                      ....++++++|++ . +|+|+.||.||+||..+.+..+ .+.++..+|++|+++|||..+|| .+ +.+|+|||..-   
T Consensus       226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---  301 (357)
T 4g56_B          226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ-TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF---  301 (357)
T ss_dssp             CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE-EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS---
T ss_pred             cccccchhhhhcccceEEEeecccceeEEECCCCcEeE-EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---
Confidence            4458999999965 4 8999999999999998887666 46889999999999999865444 44 57899999631   


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                        .+.++       ..+|.-.-+...|+  +.+  +..++++|.+..|.+|++.+
T Consensus       302 ------------------~~~~~-------~~~H~~~V~~vafs--P~d--~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          302 ------------------SEVFR-------DLSHRDFVTGVAWS--PLD--HSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             ------------------CEEEE-------ECCCSSCEEEEEEC--SSS--TTEEEEEETTSCEEEEECC-
T ss_pred             ------------------CcEeE-------ECCCCCCEEEEEEe--CCC--CCEEEEEcCCCeEEEEECCC
Confidence                              12333       12343333444666  312  46788889999999999854

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.23  E-value=1.4e-10  Score=98.45  Aligned_cols=119  Identities=13%  Similarity=0.115  Sum_probs=87.3

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEecc--ccccceecCCCCCCCeeEEEeCCC--CCEEEEeC-CcceEEEEeeec
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSN--SMRQAKTAFPGLGSPIRYVDVTYD--GRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~--~~r~aKt~lpglGdPI~~vdvS~D--G~~lLaT~-~~~L~L~dt~~~  103 (244)
                      ...++|++++++|. ||+|+.||.|++||..  ..+..+ .+.++..+|++|+++++  |++|++.+ +..|+|||..- 
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-   88 (379)
T 3jrp_A           11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID-TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-   88 (379)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET-
T ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeee-EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC-
Confidence            45689999999997 9999999999999986  443333 56889999999999988  99998777 57899999741 


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                        .....+.      .+.++....+...|+  + .+.+..+++++.+..+.+||++.-
T Consensus        89 ------------------~~~~~~~------~~~~~~~~v~~~~~~--~-~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           89 ------------------GRWSQIA------VHAVHSASVNSVQWA--P-HEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             ------------------TEEEEEE------EECCCSSCEEEEEEC--C-GGGCSEEEEEETTSEEEEEECCTT
T ss_pred             ------------------CceeEee------eecCCCcceEEEEeC--C-CCCCCEEEEecCCCcEEEEecCCC
Confidence                              0111222      223334444555666  2 111578999999999999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.23  E-value=1.3e-10  Score=100.75  Aligned_cols=121  Identities=13%  Similarity=0.202  Sum_probs=86.0

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCC
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNG  107 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~  107 (244)
                      -...+++++++|+|. ||+|+.||.||+||..+.+...+ ++ ..++|.+++++|||.+|++.+.+.+++|+...     
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~-----  267 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT-LS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP-----  267 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-EE-CCSCEEEEEECSSSSEEEEEETTEEEEEEETT-----
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ec-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCc-----
Confidence            345689999999997 99999999999999987765553 44 46799999999999999998888899998631     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhc-CCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLA-GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~-G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                     ....-.++|+...+. .+........|+  +   .++.+++++.+..+.+||+..
T Consensus       268 ---------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p---dg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          268 ---------------QYLVDDLRPEFAGYSKAAEPHAVSLAWS--A---DGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ---------------EEEEEEECCCCTTCCGGGCCCEEEEEEC--T---TSSEEEEEETTSCEEEEEEEE
T ss_pred             ---------------CeeeeccCccccccccCcCcceeEEEEC--C---CCCEEEEeecCceEEEEEEee
Confidence                           001112223221111 111122334565  3   268899999999999999853

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.8e-10  Score=97.08  Aligned_cols=114  Identities=12%  Similarity=0.082  Sum_probs=84.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ...++|++++++|. ||+|+.||.|++||..+++..+ .+.++..+|.+++++|||++|++.+ +..|++||..-     
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----  105 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN-----  105 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-----
T ss_pred             eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh-hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----
Confidence            45699999999997 9999999999999998776555 5788999999999999999999776 47799999631     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeC-----CeEEEEechhh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVG-----KFSVIWNFQQV  177 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG-----~fvvvWn~~kV  177 (244)
                                      .+.+..      +. +....+...|+  +   .+..+++++.+     ..+.+||+..-
T Consensus       106 ----------------~~~~~~------~~-~~~~v~~~~~~--~---~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B          106 ----------------GQCVAT------WK-SPVPVKRVEFS--P---CGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             ----------------CCEEEE------EE-CSSCEEEEEEC--T---TSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             ----------------CcEEEE------ee-cCCCeEEEEEc--c---CCCEEEEecCCccCCCCEEEEEEecCC
Confidence                            111110      00 12223444565  2   25677777776     89999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.22  E-value=3.2e-10  Score=114.16  Aligned_cols=121  Identities=10%  Similarity=0.082  Sum_probs=85.3

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEecccccc--------------------------------------------ce
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ--------------------------------------------AK   65 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~--------------------------------------------aK   65 (244)
                      ...++|+++|+|. ||+|+.||.|||||..+.+.                                            ..
T Consensus       489 ~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  568 (902)
T 2oaj_A          489 LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS  568 (902)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred             CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence            4689999999998 99999999999999865421                                            12


Q ss_pred             ecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhc-CCccce
Q 044877           66 TAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLA-GVNNKF  143 (244)
Q Consensus        66 t~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~-G~~~~F  143 (244)
                      ..|.++..+|++|++|||| +|++.+ +.+|+|||+.                     .+..+.-.+- ..+. ||.-.-
T Consensus       569 ~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~---------------------~~~~~~~~~~-~~~~~gh~~~V  625 (902)
T 2oaj_A          569 TAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR---------------------GPAIIYMENI-REISGAQSACV  625 (902)
T ss_dssp             EEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT---------------------TTEEEEEEEG-GGTCSSCCCCE
T ss_pred             EEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC---------------------CCeEEEEeeh-hHhccccccce
Confidence            3567899999999999999 887666 4789999952                     1222210000 1233 665555


Q ss_pred             eeeeeeeecCCC---CcceEEEEeeCCeEEEEec
Q 044877          144 HKAQFSWVTENG---KQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       144 t~akFn~~tg~~---~~E~~IvtStG~fvvvWn~  174 (244)
                      +...|+..+-..   .+..++++|.+..|.+||+
T Consensus       626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            556666222111   1468889999999999998

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.22  E-value=1.7e-10  Score=97.07  Aligned_cols=115  Identities=18%  Similarity=0.207  Sum_probs=79.4

Q ss_pred             CCceeEEEecCC-Cc-EEEeCCCCcEEEEecccccc----ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           30 GTNFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQ----AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        30 ~~~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r~----aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      ...++|++++|+ |. ||+||.||.||+||....+.    ....+.++.++|.+++++|||++|++.+ +..|++|+...
T Consensus        38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~  117 (340)
T 4aow_A           38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT  117 (340)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecc
Confidence            345999999996 55 89999999999999854321    1224678999999999999999999777 57799999631


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .                     ....      .............|+     ..+..+++++.+..+.+||+..
T Consensus       118 ~---------------------~~~~------~~~~~~~~~~~~~~~-----~~~~~l~s~s~d~~~~~~d~~~  159 (340)
T 4aow_A          118 G---------------------TTTR------RFVGHTKDVLSVAFS-----SDNRQIVSGSRDKTIKLWNTLG  159 (340)
T ss_dssp             T---------------------EEEE------EEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEECTTS
T ss_pred             c---------------------ceee------eecCCCCceeEEEEe-----ecCccceeecCCCeEEEEEeCC
Confidence            0                     0111      011111111222333     2257788889999999999754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.22  E-value=2.1e-10  Score=102.13  Aligned_cols=69  Identities=16%  Similarity=0.211  Sum_probs=60.9

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .+++++++++|. ||+|+.||.||+||..+.+... .+.++..+|.+|+++|||++|++++ +.+|+|||..
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~  195 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  195 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence            378999999997 9999999999999998776555 5788999999999999999999777 5789999963

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.22  E-value=2.9e-10  Score=98.13  Aligned_cols=133  Identities=13%  Similarity=0.058  Sum_probs=88.2

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEecccccc---ceecCCC-CCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ---AKTAFPG-LGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~---aKt~lpg-lGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      -....++++++++|. ||+|+.||.|++||..+.+.   .+ .+.+ +..+|.+|+++|||++|++.+ +.+|++||...
T Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  177 (377)
T 3dwl_C           99 LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK-HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYV  177 (377)
T ss_dssp             CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE-EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred             cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee-EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence            345689999999987 99999999999999976642   44 3555 999999999999999999777 57899999853


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                      ........   ....+.+.|....+.      .+ ++.-..+...|+  +   .++.+++++.+..+.+||++.-
T Consensus       178 ~~~~~~~~---~~~~~~~~~~~~~~~------~~-~~~~~v~~~~~s--p---~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          178 RDVDAKPE---ASVWGSRLPFNTVCA------EY-PSGGWVHAVGFS--P---SGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             SSCC-CCC---SCSSCSCCCEEEEEE------CC-CCSSSEEEEEEC--T---TSSCEEEEETTTEEC-CEECST
T ss_pred             cccCCCcc---ccccccccchhhhhh------cc-cCCceEEEEEEC--C---CCCEEEEEeCCCcEEEEECCCC
Confidence            22111000   000111222233333      23 555555566776  3   2568889999999999998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.21  E-value=1.7e-10  Score=109.23  Aligned_cols=139  Identities=13%  Similarity=0.062  Sum_probs=89.4

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCC------CCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFP------GLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lp------glGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      ....|++++|+|. ||+||.||.|||||..+++..+++..      +|.++|.+|+++|||++|++.+ +.+|+|||..-
T Consensus       191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            3589999999998 99999999999999877665554323      7899999999999999998776 58899999641


Q ss_pred             ccCCCCcc-------------cccccc-c--CCCCCcceeeeeCcc--chhhcCCccceeeeeeeeecCCCCcceEEEEe
Q 044877          103 TDKNGTTK-------------TGFNGR-M--GNKIAAPRLLKLTPL--DSHLAGVNNKFHKAQFSWVTENGKQERHLVAT  164 (244)
Q Consensus       103 ~~~~~~~~-------------~GF~~~-~--~~~kp~pr~L~L~Pe--~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtS  164 (244)
                        ++-...             ..|... +  +.....-+...+...  ...+.||....+...|+  +   .+..++++|
T Consensus       271 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s--p---dg~~l~s~s  343 (611)
T 1nr0_A          271 --LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS--A---DGKTLFSAD  343 (611)
T ss_dssp             --TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC--T---TSSEEEEEE
T ss_pred             --CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe--C---CCCEEEEEe
Confidence              100000             000000 0  000000000000000  00234565555566776  2   268899999


Q ss_pred             eCCeEEEEechh
Q 044877          165 VGKFSVIWNFQQ  176 (244)
Q Consensus       165 tG~fvvvWn~~k  176 (244)
                      .+..+.+||+..
T Consensus       344 ~D~~v~~Wd~~~  355 (611)
T 1nr0_A          344 AEGHINSWDIST  355 (611)
T ss_dssp             TTSCEEEEETTT
T ss_pred             CCCcEEEEECCC
Confidence            999999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.3e-10  Score=96.44  Aligned_cols=115  Identities=14%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             CCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCC
Q 044877           29 RGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGT  108 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~  108 (244)
                      .....++++++++|.+++|+.||.|++||..+.+... .+.++..+|++++++|||+.+.++.+..|++||..-      
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~------  255 (313)
T 3odt_A          183 HNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLR-TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN------  255 (313)
T ss_dssp             CSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTT------
T ss_pred             CcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhh-hhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCC------
Confidence            4566899999999999999999999999998776555 467899999999999999754444578899999631      


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                     .+.++      .+.++....+...|+  + +   .+.++++.+..+.+||++.=
T Consensus       256 ---------------~~~~~------~~~~~~~~i~~~~~~--~-~---~~~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          256 ---------------GSLKQ------VITLPAISIWSVDCM--S-N---GDIIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             ---------------CCEEE------EEECSSSCEEEEEEC--T-T---SCEEEEETTSCEEEEESCGG
T ss_pred             ---------------CceeE------EEeccCceEEEEEEc--c-C---CCEEEEeCCCcEEEEeCCCC
Confidence                           11222      122222233444565  3 2   23889999999999998763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.21  E-value=5.1e-11  Score=105.70  Aligned_cols=122  Identities=13%  Similarity=0.191  Sum_probs=88.6

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ....+|++++|+|. ||+||.||.||+||..+.+... .++++..+|.+++++|||++|++.+ +..++|||..-.... 
T Consensus        66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~-  143 (380)
T 3iz6_a           66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR-  143 (380)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC-
T ss_pred             ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc-
Confidence            34689999999997 9999999999999998776555 5688999999999999999998877 577999997421100 


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .          ...|..+         .+.||.-......|.  +  +....++++|.+..+.+||++.
T Consensus       144 ~----------~~~~~~~---------~~~gh~~~v~~~~~~--~--~~~~~l~s~s~D~~i~~wd~~~  189 (380)
T 3iz6_a          144 D----------GNMPVSR---------VLTGHKGYASSCQYV--P--DQETRLITGSGDQTCVLWDVTT  189 (380)
T ss_dssp             C----------CSSTTCC---------BCCCCSSCCCCCBCC--S--SSSSCEEEECTTSCEEEECTTT
T ss_pred             c----------CCcccee---------eccCCCcceEEEEEe--c--CCCCEEEEECCCCcEEEEEcCC
Confidence            0          0111111         234554333444555  2  2246789999999999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.20  E-value=3.3e-10  Score=100.03  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCc-EEEEeccccccceecCCC-CCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGK-IRLYSSNSMRQAKTAFPG-LGSPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~-IRLyD~~~~r~aKt~lpg-lGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      ...++|++++|+|. ||+||.||. ||+||..+++...++..+ +..+|.+|+++|||++|++++. .+|+|||..
T Consensus       195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            45699999999998 999999998 999999888777654436 8999999999999999998874 789999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.20  E-value=8.1e-10  Score=94.09  Aligned_cols=135  Identities=12%  Similarity=0.076  Sum_probs=93.0

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEecccccc---ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ---AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~---aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      ......++++++++|. ||+|+.||.|++||....+.   .+....++..+|.+++++|||++|++.+ +..|++||...
T Consensus        94 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (372)
T 1k8k_C           94 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  173 (372)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence            3456689999999997 99999999999999976542   3445567899999999999999999776 57899999754


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .......   .....+.+.+....+.      .+.++....+...|+  +   .++.+++++.+..+.+||++.
T Consensus       174 ~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~--~---~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          174 KEVEERP---APTPWGSKMPFGELMF------ESSSSCGWVHGVCFS--A---NGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             TTTSCCC---CCBTTBSCCCTTCEEE------ECCCCSSCEEEEEEC--S---SSSEEEEEETTTEEEEEEGGG
T ss_pred             ccccccc---cccccccccchhhheE------ecCCCCCeEEEEEEC--C---CCCEEEEEeCCCEEEEEECCC
Confidence            3211000   0111112223333333      233444444555666  2   257889999999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.20  E-value=2.5e-10  Score=96.48  Aligned_cols=118  Identities=20%  Similarity=0.272  Sum_probs=87.5

Q ss_pred             CCCceeEEEecCC----Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEee
Q 044877           29 RGTNFQCFASTGD----GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        29 ~~~~Ft~vats~~----G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ....+++++++++    |. ||+|+.||.|++||..+.+... .+.++..+|.+|+++| |+++|++.+ +..|++||..
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK-HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE-EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee-eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            3456999999998    55 9999999999999998776555 5678999999999999 999998877 5789999963


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      -    ++              ....+.      .+.++....+...|+  +   .++.+++++.+..+.+||++.
T Consensus       147 ~----~~--------------~~~~~~------~~~~~~~~v~~~~~~--~---~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          147 T----DT--------------LVAIFG------GVEGHRDEVLSADYD--L---LGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             T----TE--------------EEEEEC------STTSCSSCEEEEEEC--T---TSSEEEEEETTSCEEEEESCS
T ss_pred             c----Ce--------------EEEEec------ccccccCceeEEEEC--C---CCCEEEEecCCCCEEEEECCC
Confidence            1    00              011111      112344444555666  2   257888999999999999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.20  E-value=3.2e-10  Score=99.04  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=83.6

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcc
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTK  110 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~  110 (244)
                      ..+.+.+++|. ||+|+.||.|++||..+.+. ...+.++..+|++|+++|||++|++.+. ..|++||..-    +   
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~----~---  171 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ-REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD----G---  171 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTSCEE-EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----C---
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCCcce-eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC----C---
Confidence            44556788887 99999999999999987654 4467889999999999999999987774 7799999631    0   


Q ss_pred             cccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          111 TGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                    +.++      .+.++.-..+...|+  +   .+..+++++.+..+.+||++.
T Consensus       172 --------------~~~~------~~~~h~~~v~~~~~~--~---~~~~l~s~~~d~~v~iwd~~~  212 (420)
T 3vl1_A          172 --------------SNPR------TLIGHRATVTDIAII--D---RGRNVLSASLDGTIRLWECGT  212 (420)
T ss_dssp             --------------CCCE------EEECCSSCEEEEEEE--T---TTTEEEEEETTSCEEEEETTT
T ss_pred             --------------cCce------EEcCCCCcEEEEEEc--C---CCCEEEEEcCCCcEEEeECCC
Confidence                          1111      223444444556776  2   257888999999999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.20  E-value=2.2e-10  Score=108.49  Aligned_cols=121  Identities=16%  Similarity=0.182  Sum_probs=88.4

Q ss_pred             CCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           30 GTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        30 ~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      ....++++++|+|.  ||+||.||.||+||....+..+ .|.+|.++|.+|+++|||++|++.+ +.+|+|||..-    
T Consensus       147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~-~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~----  221 (611)
T 1nr0_A          147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD----  221 (611)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----
T ss_pred             CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee-eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC----
Confidence            34589999999884  9999999999999987776555 5789999999999999999998776 58899999631    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      ++                ..-.+....+...+|.-.-+...|+  +   .++.++++|.+..+.+||++.
T Consensus       222 g~----------------~~~~~~~~~~~~~~h~~~V~~v~~s--p---dg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          222 GT----------------KTGVFEDDSLKNVAHSGSVFGLTWS--P---DGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             CC----------------EEEECBCTTSSSCSSSSCEEEEEEC--T---TSSEEEEEETTSEEEEEETTT
T ss_pred             Cc----------------EeeeeccccccccccCCCEEEEEEC--C---CCCEEEEEeCCCeEEEEeCCC
Confidence            11                0001111111122454444555676  2   257899999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.20  E-value=2e-10  Score=104.46  Aligned_cols=114  Identities=15%  Similarity=0.159  Sum_probs=88.5

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCC-CCCCeeEEEeCC----------CCCEEEEeC-Ccce
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPG-LGSPIRYVDVTY----------DGRWILGTT-DTYL   95 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpg-lGdPI~~vdvS~----------DG~~lLaT~-~~~L   95 (244)
                      .....++++++++|. ||+|+.||.|++||..+.+..+ .+.+ +..+|++++++|          ||++|++.+ +..|
T Consensus       487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i  565 (615)
T 1pgu_A          487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI  565 (615)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred             ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee-EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcE
Confidence            345699999999998 9999999999999998776555 4666 999999999999          999999877 5789


Q ss_pred             EEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877           96 ILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus        96 ~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      +|||..-                    ..+.++      .+.++.-..+...|+  + +  +. +++++.+..+.+||++
T Consensus       566 ~iw~~~~--------------------~~~~~~------~~~~h~~~v~~l~~s--~-~--~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          566 FIYSVKR--------------------PMKIIK------ALNAHKDGVNNLLWE--T-P--ST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEESSC--------------------TTCCEE------ETTSSTTCEEEEEEE--E-T--TE-EEEEETTSCEEEEEEC
T ss_pred             EEEECCC--------------------Cceech------hhhcCccceEEEEEc--C-C--CC-eEEecCCceEEEEeee
Confidence            9999731                    002333      234444455666777  3 2  34 8899999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.20  E-value=2.3e-10  Score=101.41  Aligned_cols=120  Identities=15%  Similarity=0.162  Sum_probs=82.5

Q ss_pred             CCceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           30 GTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        30 ~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      .....++++++ ++. +++||.||.||+||.+........+.++..+|.+|+++|||++|++++ +.+|+|||..-    
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~----  280 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT----  280 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT----
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC----
Confidence            34578888877 666 999999999999998643233335788999999999999999999887 47899999741    


Q ss_pred             CCcccccccccCCCCCcceeeee-CccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKL-TPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L-~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      +                 ..++. ..+.....+..-..+...|+  +   .++.+++++.+..+.+||+.
T Consensus       281 ~-----------------~~~~~~~~~~~~~~~~~~~v~~~~~s--~---~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          281 G-----------------HQLQVYNREPDRNDNELPIVTSVAFS--I---SGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             T-----------------EEEEEECCCCSSSCCSSCSCSEEEEC--S---SSSEEEEECTTSCEEEEETT
T ss_pred             C-----------------cEEEEecccccccccccCceEEEEEC--C---CCCEEEEEECCCCEEEEECC
Confidence            1                 11110 00000000011112344666  2   26889999999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.19  E-value=8e-11  Score=101.86  Aligned_cols=118  Identities=11%  Similarity=0.086  Sum_probs=85.2

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCC--CCCEEEEeC-CcceEEEEeeeccC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTY--DGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~--DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      ...++++++++|. ||+||.||.|||||..+++. ....|.+|.++|.+|++++  +|++|++.+ +.+|+|||..-   
T Consensus        14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~---   90 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN---   90 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS---
T ss_pred             CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC---
Confidence            4589999999998 99999999999999865432 2335789999999999997  489888766 68899999631   


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                       +               ....+.      .+.|+.-..+...|+  + .+.+..++++|.+..+.+||++.
T Consensus        91 -~---------------~~~~~~------~~~~h~~~V~~v~~~--p-~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           91 -G---------------TWEKSH------EHAGHDSSVNSVCWA--P-HDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             -S---------------CCCEEE------EECCCSSCCCEEEEC--C-TTTCSCEEEECSSSCEEEEEECS
T ss_pred             -C---------------cceEEE------EccCCCCceEEEEEC--C-CCCCcEEEEEcCCCCEEEEecCC
Confidence             0               001111      233444334455666  2 12257888999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.19  E-value=3.3e-11  Score=104.08  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=82.8

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEecccc--ccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSM--RQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~--r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      .+.+|++++++|. ||+|+.||.|++||..+.  +..+ .+.++..+|.+|+++|||++|++.+ +..|+|||..-.  .
T Consensus        12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~--~   88 (377)
T 3dwl_C           12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD--G   88 (377)
T ss_dssp             SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--------
T ss_pred             CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC--C
Confidence            3689999999998 999999999999999765  4344 5788999999999999999998777 578999997421  0


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                             .       ..+ .+       .+.++.-..+...|+  +   .+..+++++.+..+.+||++.-
T Consensus        89 -------~-------~~~-~~-------~~~~~~~~v~~~~~~--~---~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           89 -------T-------WKQ-TL-------VLLRLNRAATFVRWS--P---NEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             -------C-------CCC-EE-------ECCCCSSCEEEEECC--T---TSSCCEEEESSSCEEECCC---
T ss_pred             -------c-------eee-ee-------EecccCCceEEEEEC--C---CCCEEEEEecCCeEEEEEECCc
Confidence                   0       001 11       123334344555666  2   2578899999999999998753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.18  E-value=3.7e-10  Score=94.14  Aligned_cols=67  Identities=16%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceec-CCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTA-FPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~-lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      .++++.|+++.||+|. ||.|||||..+++..+++ +.+++.+|++|+++|||++|++.+ +.+|+|||.
T Consensus        28 ~~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~   96 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV   96 (318)
T ss_dssp             CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeec
Confidence            3789999998788875 999999999887766543 467889999999999999999777 578999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.18  E-value=3.2e-10  Score=101.01  Aligned_cols=129  Identities=17%  Similarity=0.185  Sum_probs=85.9

Q ss_pred             CCCCceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceec------CCCCCCCeeEEEeCCCCCEEEEeC-CcceEEE
Q 044877           28 SRGTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTA------FPGLGSPIRYVDVTYDGRWILGTT-DTYLILI   98 (244)
Q Consensus        28 ~~~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~------lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~   98 (244)
                      .....++++++++ +|. ||+|+.||.||+||..+++...++      ..++.++|.+|+++|||++|++.+ +..|+||
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w  283 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  283 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            3445688999999 787 999999999999999766544322      257889999999999999999877 5789999


Q ss_pred             EeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877           99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus        99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      |..-.....      .  . ........+.      .+.|+........|+  .   .++.++++|.+..+.+||++.
T Consensus       284 d~~~~~~~~------~--~-~~~~~~~~~~------~~~~h~~~v~~~~~~--~---~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          284 NLQNANNKS------D--S-KTPNSGTCEV------TYIGHKDFVLSVATT--Q---NDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EC------------------------CEEE------EEECCSSCEEEEEEC--G---GGCEEEEEETTSEEEEEETTT
T ss_pred             ECCCCCCcc------c--c-cCCCCCcceE------EEecccCcEEEEEEC--C---CCCEEEEEeCCCeEEEEECCC
Confidence            975311000      0  0 0000111121      345555434444565  2   257888999999999999763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.18  E-value=2.4e-10  Score=100.82  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=87.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ...++|++++++|. ||+||.||.||+||..+.+... .++.+..+|.+++++|||++|++.+ ++.+++|+.....  .
T Consensus        64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~--~  140 (354)
T 2pbi_B           64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK--N  140 (354)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT--T
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc--c
Confidence            34589999999997 9999999999999987766544 4677888999999999999999887 4779999975321  1


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .+   ..       ...+.         +.++........|+  +   .+..++++|.+..+.+||++.
T Consensus       141 ~~---~~-------~~~~~---------~~~h~~~v~~~~~~--~---~~~~l~t~s~D~~v~lwd~~~  185 (354)
T 2pbi_B          141 EN---MA-------AKKKS---------VAMHTNYLSACSFT--N---SDMQILTASGDGTCALWDVES  185 (354)
T ss_dssp             CC---SG-------GGCEE---------EEECSSCEEEEEEC--S---SSSEEEEEETTSEEEEEETTT
T ss_pred             cc---cc-------cccee---------eeccCCcEEEEEEe--C---CCCEEEEEeCCCcEEEEeCCC
Confidence            00   00       01111         22333344455665  2   257899999999999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.18  E-value=2.3e-10  Score=97.43  Aligned_cols=116  Identities=15%  Similarity=0.193  Sum_probs=85.5

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDK  105 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~  105 (244)
                      ..+.+|++++++|. ||+|+.||.|++||..+.+  ..+ .++++..+|.+++++|||++|++.+. ..|++||..-   
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---   83 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG---   83 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET---
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee-eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC---
Confidence            34689999999998 9999999999999997654  344 46789999999999999999998774 7799999731   


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                       ++    .         . ..+.       +.++....+...|+  +   .+..+++++.+..+.+||++.
T Consensus        84 -~~----~---------~-~~~~-------~~~~~~~v~~~~~~--~---~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           84 -RT----W---------K-PTLV-------ILRINRAARCVRWA--P---NEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             -TE----E---------E-EEEE-------CCCCSSCEEEEEEC--T---TSSEEEEEETTSSEEEEEEET
T ss_pred             -Ce----e---------e-eeEE-------eecCCCceeEEEEC--C---CCCEEEEEeCCCEEEEEEecC
Confidence             00    0         0 1111       12233333445665  2   257888889999999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.18  E-value=5.4e-10  Score=99.42  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=80.9

Q ss_pred             eeEEEecCCCc-E--EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCc
Q 044877           33 FQCFASTGDGS-I--VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTT  109 (244)
Q Consensus        33 Ft~vats~~G~-I--avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~  109 (244)
                      ..+|+++|+|. +  |+|+.||.||+||..+++...+ + .++.+|.+|++||||++|++++++.+++|+..-    +  
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~-~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~----~--  207 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE-I-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVT----G--  207 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE-E-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTT----C--
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE-e-CCCCceEEEEEccCCceEEeccceeEEEEEecc----C--
Confidence            56899999998 4  4566899999999988765543 3 477899999999999999999998888888531    1  


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCC----eEEEEechhh
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGK----FSVIWNFQQV  177 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~----fvvvWn~~kV  177 (244)
                                   ......      ...++...+....|+  + +  +...+++|.+.    .+..|++..-
T Consensus       208 -------------~~~~~~------~~~~~~~~v~~v~fs--p-d--g~~l~~~s~d~~~~~~i~~~~~~~~  255 (365)
T 4h5i_A          208 -------------SCIARK------TDFDKNWSLSKINFI--A-D--DTVLIAASLKKGKGIVLTKISIKSG  255 (365)
T ss_dssp             -------------CEEEEE------CCCCTTEEEEEEEEE--E-T--TEEEEEEEESSSCCEEEEEEEEETT
T ss_pred             -------------cceeee------ecCCCCCCEEEEEEc--C-C--CCEEEEEecCCcceeEEeecccccc
Confidence                         001111      123344556667887  2 2  57777887766    7888987643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.16  E-value=3.8e-10  Score=99.06  Aligned_cols=123  Identities=11%  Similarity=0.134  Sum_probs=90.1

Q ss_pred             CceeEEEecCCC---cEEEeCCCCcEEEEecccccc---------------------------------------ceecC
Q 044877           31 TNFQCFASTGDG---SIVVGSLDGKIRLYSSNSMRQ---------------------------------------AKTAF   68 (244)
Q Consensus        31 ~~Ft~vats~~G---~IavGS~dG~IRLyD~~~~r~---------------------------------------aKt~l   68 (244)
                      ..++++++++++   .+++|+.||.||+||....+.                                       .+..+
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            568999999987   499999999999999865322                                       12335


Q ss_pred             CCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeee
Q 044877           69 PGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQF  148 (244)
Q Consensus        69 pglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akF  148 (244)
                      .++..+|.+|+++|||++|++..+..|+|||.....                 ..-+.+.++|.  .+.++....+...|
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~--~~~~~~~~v~~~~~  234 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITD-----------------RSFNIVDIKPA--NMEELTEVITAAEF  234 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEE-----------------EEEEEEECCCS--SGGGCCCCEEEEEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCC-----------------ceeeeeecccc--cccccCcceEEEEE
Confidence            789999999999999999998777889999974210                 11223444444  23444444556677


Q ss_pred             eeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          149 SWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       149 n~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      +  +  +....+++++.+..+.+||++.
T Consensus       235 ~--p--~~~~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          235 H--P--NSCNTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             C--S--SCTTEEEEEETTSCEEEEETTT
T ss_pred             C--C--CCCcEEEEEeCCCeEEEEECcC
Confidence            6  2  2137899999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.16  E-value=3.2e-10  Score=99.07  Aligned_cols=137  Identities=16%  Similarity=0.163  Sum_probs=88.9

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      -....+|++++|+|. ||+|+.||.|++||..+.+..+ .+.++..+|.+|+++|||++|++.+ +.+|++||..-    
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~----  212 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR-TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT----  212 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT----
T ss_pred             ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC----
Confidence            345689999999997 9999999999999998776555 4678999999999999999999777 57799999741    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchh--hcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSH--LAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~--~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      ++-..-|.... ........+.+.|.+-.  ...+....+...|+  +   .++.+++++.+..+.+||++.
T Consensus       213 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s--~---~~~~l~~~~~dg~i~i~d~~~  278 (420)
T 3vl1_A          213 GTTIHTFNRKE-NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG--T---YGKYVIAGHVSGVITVHNVFS  278 (420)
T ss_dssp             TEEEEEECBTT-BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS--C---TTEEEEEEETTSCEEEEETTT
T ss_pred             CceeEEeecCC-CCCCCccEEEEecCCcceeeecccCcccceEEc--C---CCCEEEEEcCCCeEEEEECCC
Confidence            11000011000 01111222222222111  01111122233454  2   257888899999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.16  E-value=4.6e-10  Score=99.07  Aligned_cols=113  Identities=12%  Similarity=0.183  Sum_probs=86.0

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC--CCCEEEEeC-CcceEEEEeeeccCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY--DGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~--DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      ..++++++++++. |++||.||.||+||..+++..+ .+.++..+|..++++|  +|++|++.+ +..|++||..-    
T Consensus       155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~----  229 (354)
T 2pbi_B          155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----  229 (354)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT----
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC----
Confidence            4478999999886 9999999999999998776555 5788999999999987  578888766 68899999631    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                       .+.++      .+.++....+...|+  +   .+..++++|.+..+.+||++.
T Consensus       230 -----------------~~~~~------~~~~h~~~v~~v~~~--p---~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          230 -----------------GQCVQ------AFETHESDVNSVRYY--P---SGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             -----------------CCEEE------EECCCSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTT
T ss_pred             -----------------CcEEE------EecCCCCCeEEEEEe--C---CCCEEEEEeCCCeEEEEECCC
Confidence                             11222      233444444555666  2   257899999999999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.15  E-value=4.9e-10  Score=98.86  Aligned_cols=114  Identities=11%  Similarity=0.027  Sum_probs=83.9

Q ss_pred             CCceeEEEecC-CCc-EEEeCCCCcEEEEecccc-------ccceecCCCCCCCeeEEEeCCCCC-EEEEeC-CcceEEE
Q 044877           30 GTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSM-------RQAKTAFPGLGSPIRYVDVTYDGR-WILGTT-DTYLILI   98 (244)
Q Consensus        30 ~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~-------r~aKt~lpglGdPI~~vdvS~DG~-~lLaT~-~~~L~L~   98 (244)
                      ....+++++++ +|. ||+|+.||.|++||..+.       +... .+.++..+|.+|+++|||+ +|++.+ +..|++|
T Consensus        81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  159 (402)
T 2aq5_A           81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI-TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW  159 (402)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSE-EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred             CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceE-EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence            45689999999 776 999999999999999765       2233 4678999999999999994 666555 5779999


Q ss_pred             EeeeccCCCCcccccccccCCCCCcceeeeeCccchhh--cCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877           99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHL--AGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus        99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~--~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      |..-                     .+.+.      .+  .++.-..+...|+  +   .+..+++++.+..+.+||++.
T Consensus       160 d~~~---------------------~~~~~------~~~~~~~~~~v~~~~~~--~---~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          160 DVGT---------------------GAAVL------TLGPDVHPDTIYSVDWS--R---DGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             ETTT---------------------TEEEE------EECTTTCCSCEEEEEEC--T---TSSCEEEEETTSEEEEEETTT
T ss_pred             ECCC---------------------CCccE------EEecCCCCCceEEEEEC--C---CCCEEEEEecCCcEEEEeCCC
Confidence            9631                     11111      11  2333344555666  2   257889999999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.14  E-value=1.5e-09  Score=93.00  Aligned_cols=73  Identities=14%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             CCCceeEEEecCCCc--EEEeCCCCcEEEEecccccccee---------------cCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           29 RGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKT---------------AFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        29 ~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt---------------~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      ....++|++++|+|.  +|+|+.||.|++||.........               .+.++..+|.+++++|||++|++.+
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            345689999999986  88999999999999965431111               2257889999999999999999777


Q ss_pred             -CcceEEEEee
Q 044877           92 -DTYLILICTL  101 (244)
Q Consensus        92 -~~~L~L~dt~  101 (244)
                       +..|++||..
T Consensus       265 ~dg~i~vwd~~  275 (408)
T 4a11_B          265 TDNRMRLWNSS  275 (408)
T ss_dssp             TTSCEEEEETT
T ss_pred             CCCeEEEEECC
Confidence             5789999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.14  E-value=4.8e-10  Score=96.92  Aligned_cols=123  Identities=17%  Similarity=0.215  Sum_probs=84.1

Q ss_pred             CCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCC---C---CCCeeEEEeCCCCCEEEEeCC----cceEEEE
Q 044877           30 GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPG---L---GSPIRYVDVTYDGRWILGTTD----TYLILIC   99 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpg---l---GdPI~~vdvS~DG~~lLaT~~----~~L~L~d   99 (244)
                      ....++++++++|.+++|+.||.|++||..+.+... .+++   +   ..+|.+++++|||++|++.+.    ..|++||
T Consensus       186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d  264 (397)
T 1sq9_A          186 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLY-NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  264 (397)
T ss_dssp             CCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEE-EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             CCCceEEEECCCceEEEEeCCCcEEEEECCCCceeE-EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence            556899999998889999999999999998765444 4566   7   899999999999999998875    4799999


Q ss_pred             eeeccCCCCcccccccccCCCCCcceeeee--Cccchhhc--CCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          100 TLFTDKNGTTKTGFNGRMGNKIAAPRLLKL--TPLDSHLA--GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       100 t~~~~~~~~~~~GF~~~~~~~kp~pr~L~L--~Pe~~~~~--G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                      ..-    ++              ..+.+..  .|+.....  .+....+...|+  +   .++.+++++.+..+.+||++
T Consensus       265 ~~~----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~---~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          265 TEF----GE--------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFN--D---SGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             TTT----CC--------------EEEEECBC--------CCBSBSSCEEEEEEC--S---SSSEEEEEETTSEEEEEETT
T ss_pred             CCC----Cc--------------ccceeccCcccccccccccccCCcEEEEEEC--C---CCCEEEEEeCCCeEEEEEcC
Confidence            741    10              0111110  01110000  022233444555  2   25788889999999999986


Q ss_pred             h
Q 044877          176 Q  176 (244)
Q Consensus       176 k  176 (244)
                      .
T Consensus       322 ~  322 (397)
T 1sq9_A          322 T  322 (397)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.14  E-value=4.5e-10  Score=98.64  Aligned_cols=85  Identities=12%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             ceecccccccCC-------CCceeEEEecCCCc-EEEeCCCCcEEEEecccccc----------ceecCCCCC-------
Q 044877           18 VLNWSQGHQFSR-------GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ----------AKTAFPGLG-------   72 (244)
Q Consensus        18 ~~~~~~~k~Y~~-------~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~----------aKt~lpglG-------   72 (244)
                      .++|.-...|..       ...++|++++++|. ||+|+.||.||+||..+.+.          ....+.++.       
T Consensus         9 ~~~w~~~q~~~~~~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~   88 (447)
T 3dw8_B            9 DIQWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLK   88 (447)
T ss_dssp             CCCCEEEECCSCSSSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGG
T ss_pred             ceeEEEEEecccccccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccc
Confidence            345554444544       46799999999997 99999999999999876542          233467887       


Q ss_pred             -----CCeeEEEeCCCC--CEEEEeC-CcceEEEEeee
Q 044877           73 -----SPIRYVDVTYDG--RWILGTT-DTYLILICTLF  102 (244)
Q Consensus        73 -----dPI~~vdvS~DG--~~lLaT~-~~~L~L~dt~~  102 (244)
                           .+|.+|+++|++  .+|++++ +.+|+|||..-
T Consensus        89 ~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~  126 (447)
T 3dw8_B           89 SLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE  126 (447)
T ss_dssp             TEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred             cccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccc
Confidence                 899999999998  7777666 58899999764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.14  E-value=5.8e-10  Score=93.14  Aligned_cols=119  Identities=11%  Similarity=0.165  Sum_probs=83.5

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceec--C--CCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTA--F--PGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~--l--pglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      .......++++++++|. |++|+ ||.|++||..+....+..  +  .++..+|.+++++|||++|++.+ +..|++||.
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            34566789999999998 88888 999999999754322211  1  26889999999999999999777 477999996


Q ss_pred             eeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .-                   +.++.+.      .+.++....+...|+  +   .+..+++++.+..+.+||++.
T Consensus       127 ~~-------------------~~~~~~~------~~~~~~~~i~~~~~~--~---~~~~l~~~~~dg~v~~~d~~~  172 (337)
T 1gxr_A          127 AA-------------------PTPRIKA------ELTSSAPACYALAIS--P---DSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CC-------------------C--EEEE------EEECSSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTT
T ss_pred             CC-------------------CCcceee------ecccCCCceEEEEEC--C---CCCEEEEEeCCCcEEEEeCCC
Confidence            31                   1111222      122333333444565  2   257888888999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.14  E-value=9.9e-10  Score=90.78  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CCCceeEEEecC--CCc-EEEeCCCCcEEEEeccccc---------cceecCCCCCCCeeEEEeCCC--CCEEEEeC-Cc
Q 044877           29 RGTNFQCFASTG--DGS-IVVGSLDGKIRLYSSNSMR---------QAKTAFPGLGSPIRYVDVTYD--GRWILGTT-DT   93 (244)
Q Consensus        29 ~~~~Ft~vats~--~G~-IavGS~dG~IRLyD~~~~r---------~aKt~lpglGdPI~~vdvS~D--G~~lLaT~-~~   93 (244)
                      .....+|+++++  +|. ||+|+.||.||+||..+.+         ... .+.++..+|.+|+++||  |++|++++ +.
T Consensus        56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  134 (351)
T 3f3f_A           56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC-TLNDSKGSLYSVKFAPAHLGLKLACLGNDG  134 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred             CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceee-eecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence            455699999999  466 9999999999999997642         233 46789999999999999  99999877 57


Q ss_pred             ceEEEEee
Q 044877           94 YLILICTL  101 (244)
Q Consensus        94 ~L~L~dt~  101 (244)
                      .|++||..
T Consensus       135 ~v~iwd~~  142 (351)
T 3f3f_A          135 ILRLYDAL  142 (351)
T ss_dssp             EEEEEECS
T ss_pred             cEEEecCC
Confidence            79999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.14  E-value=4.9e-10  Score=96.84  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=61.9

Q ss_pred             CCceeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCC-------------CCCCeeEEEeCCCCCEEEEeC-
Q 044877           30 GTNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPG-------------LGSPIRYVDVTYDGRWILGTT-   91 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpg-------------lGdPI~~vdvS~DG~~lLaT~-   91 (244)
                      ....++++++++|. |++|+.|   |.|++||..+.+... .+.+             +..+|.+++++|||++|++.+ 
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence            66799999999988 9999999   999999998776555 4666             899999999999999999887 


Q ss_pred             CcceEEEEee
Q 044877           92 DTYLILICTL  101 (244)
Q Consensus        92 ~~~L~L~dt~  101 (244)
                      +..|++||..
T Consensus       312 dg~i~iwd~~  321 (397)
T 1sq9_A          312 DGKLRFWDVK  321 (397)
T ss_dssp             TSEEEEEETT
T ss_pred             CCeEEEEEcC
Confidence            5779999973

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.14  E-value=5.5e-10  Score=94.29  Aligned_cols=134  Identities=12%  Similarity=0.067  Sum_probs=86.5

Q ss_pred             CCCceeEEEecC---CCc-EEEeCCCCcEEEEeccccccceec----CCCCCCCeeEEEeCCCCCE-EEEeC-CcceEEE
Q 044877           29 RGTNFQCFASTG---DGS-IVVGSLDGKIRLYSSNSMRQAKTA----FPGLGSPIRYVDVTYDGRW-ILGTT-DTYLILI   98 (244)
Q Consensus        29 ~~~~Ft~vats~---~G~-IavGS~dG~IRLyD~~~~r~aKt~----lpglGdPI~~vdvS~DG~~-lLaT~-~~~L~L~   98 (244)
                      ....+++++++|   +|. +++|+.||.|++||..+.+..++.    ++++..+|.+++++|||++ |++.+ +..|+||
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence            356789999999   776 999999999999999766544321    1389999999999999994 55444 5789999


Q ss_pred             EeeeccCCCCcccccc--cccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEE-EEeeCCeEEEEech
Q 044877           99 CTLFTDKNGTTKTGFN--GRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHL-VATVGKFSVIWNFQ  175 (244)
Q Consensus        99 dt~~~~~~~~~~~GF~--~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~I-vtStG~fvvvWn~~  175 (244)
                      |.......    .-+.  ..+.......+.+.      .+.++....+...|+  +   .++.++ .++.+..+.+||+.
T Consensus       288 d~~~~~~~----~~~~~~g~~~~~~~~~~~~~------~~~~~~~~v~~~~~s--~---~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          288 KYEYPIQR----SKKDSEGIEMGVAGSVSLLQ------NVTLSTQPISSLDWS--P---DKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEECCSCC------CCTTSCCCCCCCEEEEEE------EEECCSSCEEEEEEC--S---SSTTEEEEEETTSEEEEEEEC
T ss_pred             ecCCCccc----ccccCCCCccccccccceee------ccccCCCCeeEEEEc--C---CCCeEEEEecCCCcEEEEECC
Confidence            98642111    0000  00000001113333      344444444555666  2   246666 58889999999997


Q ss_pred             hh
Q 044877          176 QV  177 (244)
Q Consensus       176 kV  177 (244)
                      +.
T Consensus       353 ~~  354 (357)
T 3i2n_A          353 KL  354 (357)
T ss_dssp             C-
T ss_pred             Cc
Confidence            54

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.14  E-value=4.7e-10  Score=107.14  Aligned_cols=118  Identities=23%  Similarity=0.275  Sum_probs=87.5

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~  108 (244)
                      ..++|++++++|. |++||.||.||+||..+++..+ .+.+|..+|.+|+++|||++|++.+ +.+|+|||..-     .
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~-----~  504 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR-RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-----E  504 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-----C
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee-EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC-----C
Confidence            4589999999998 9999999999999998776555 4678999999999999999999777 57899999521     0


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      ....+..   ...+|....+...|+.   .+....++++|.+..|.+||++.
T Consensus       505 ----------------~~~~~~~---~~~~h~~~v~~~~~~~---~~~~~~l~s~s~d~~v~vwd~~~  550 (694)
T 3dm0_A          505 ----------------CKYTISE---GGEGHRDWVSCVRFSP---NTLQPTIVSASWDKTVKVWNLSN  550 (694)
T ss_dssp             ----------------EEEEECS---STTSCSSCEEEEEECS---CSSSCEEEEEETTSCEEEEETTT
T ss_pred             ----------------cceeecc---CCCCCCCcEEEEEEeC---CCCcceEEEEeCCCeEEEEECCC
Confidence                            0111110   1123443445557762   22346788999999999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.13  E-value=5.2e-10  Score=94.47  Aligned_cols=137  Identities=13%  Similarity=0.047  Sum_probs=89.4

Q ss_pred             CCCceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceec--CCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           29 RGTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTA--FPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        29 ~~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~--lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      ....++++++++ +|. ||+|+.||.|++||..+++...++  +.++..+|.+|+++|||++|++.+ +..|++||..-.
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK  193 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence            456699999999 887 999999999999999876644432  268999999999999999999887 478999997521


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCc------cchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTP------LDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~P------e~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                          +...-+...+. -.|....+...+      +-....++....+...|+       ++.+++++.+..+.+||+..-
T Consensus       194 ----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          194 ----RMMNAIKESYD-YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-------GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             ----HHHHHHHHHHT-CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-------TTEEEEECSSSEEEEEEESST
T ss_pred             ----ccccccceeEE-ecCCCCcccccceeeccCccccccCCcceEEEEEEc-------CCEEEEEecCCEEEEEeCCCc
Confidence                10011111000 001111111111      111122233334444554       368999999999999998654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.12  E-value=4.4e-10  Score=106.82  Aligned_cols=114  Identities=8%  Similarity=0.164  Sum_probs=87.4

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~  107 (244)
                      ....+|++++|+|. ||+|+.||.|++||..+++..+ .+.++..+|++++++|||++|++.+. ..|++||..-     
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-----   86 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-----   86 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-----
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----
Confidence            34589999999998 9999999999999988776555 46789999999999999999998775 7799999631     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      .+.++      .+.++.-..+...|+  +   .+..+++++.+..+.+||++.
T Consensus        87 ----------------~~~~~------~~~~~~~~v~~~~~s--~---~~~~l~~~~~dg~i~vw~~~~  128 (814)
T 3mkq_A           87 ----------------GEKVV------DFEAHPDYIRSIAVH--P---TKPYVLSGSDDLTVKLWNWEN  128 (814)
T ss_dssp             ----------------CCEEE------EEECCSSCEEEEEEC--S---SSSEEEEEETTSEEEEEEGGG
T ss_pred             ----------------CcEEE------EEecCCCCEEEEEEe--C---CCCEEEEEcCCCEEEEEECCC
Confidence                            11222      223343344455666  2   256788889999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.12  E-value=1.5e-09  Score=90.64  Aligned_cols=117  Identities=10%  Similarity=0.193  Sum_probs=85.3

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      ......++++++++|. |++|+.||.|++||..+.+. ....+.++..+|.+++++|||++|++.+ +..|++||..-  
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--  172 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--  172 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--
Confidence            3456799999999997 99999999999999976541 2335678899999999999999999776 47799999631  


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                         .+.++      .+.++.-..+...|+  +   .++.+++++.+..+.+||++.
T Consensus       173 -------------------~~~~~------~~~~~~~~i~~~~~~--~---~~~~l~~~~~dg~i~~~d~~~  214 (337)
T 1gxr_A          173 -------------------QTLVR------QFQGHTDGASCIDIS--N---DGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             -------------------TEEEE------EECCCSSCEEEEEEC--T---TSSEEEEEETTSEEEEEETTT
T ss_pred             -------------------Cceee------eeecccCceEEEEEC--C---CCCEEEEEecCCcEEEEECCC
Confidence                               11111      122223333444555  2   257888888999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.12  E-value=2.1e-10  Score=101.59  Aligned_cols=134  Identities=15%  Similarity=0.206  Sum_probs=90.3

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEE----EeCCCCCEEEEeCC-cceEEEEeeec
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYV----DVTYDGRWILGTTD-TYLILICTLFT  103 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~v----dvS~DG~~lLaT~~-~~L~L~dt~~~  103 (244)
                      ...++|++++++|. ||+|+.||.||+||..+.+..++.-.++..+|++|    ++++||++|++.+. ..|+|||..- 
T Consensus       214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-  292 (437)
T 3gre_A          214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-  292 (437)
T ss_dssp             GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-
Confidence            35799999999998 99999999999999988766665433577799999    66678999998875 6799999741 


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCcc-----chhhcC--CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPL-----DSHLAG--VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe-----~~~~~G--~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                         ++    ....+......+..+...|.     +..+.|  +....+...|+    +  ++.+++++.+..|.+||++.
T Consensus       293 ---~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~----~--~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          293 ---GH----CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS----N--DKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             ---TE----EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE----T--TEEEEEEGGGTEEEEEETTC
T ss_pred             ---Cc----EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC----C--ceEEEecCCCCeEEEEECCC
Confidence               11    11111111112223333332     223344  33344444665    1  37788888899999999875


Q ss_pred             h
Q 044877          177 V  177 (244)
Q Consensus       177 V  177 (244)
                      -
T Consensus       360 ~  360 (437)
T 3gre_A          360 L  360 (437)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.11  E-value=6.8e-10  Score=111.44  Aligned_cols=116  Identities=10%  Similarity=0.176  Sum_probs=89.0

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ...++|++++++|. ||+|+.||.|++||..+++... .++++.++|+++++||||++|++.+ +..|++||..-     
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-----  688 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL-DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-----  688 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----
T ss_pred             cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE-EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-----
Confidence            35589999999998 9999999999999998876555 4689999999999999999999877 47799999631     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      .+.++      .+.++....+...|+  + .+....+++++.+..+.+||+..
T Consensus       689 ----------------~~~~~------~~~~~~~~v~~~~~~--~-~~~~~~l~sg~~d~~v~vwd~~~  732 (1249)
T 3sfz_A          689 ----------------GKLVH------TYDEHSEQVNCCHFT--N-KSNHLLLATGSNDFFLKLWDLNQ  732 (1249)
T ss_dssp             ----------------CCEEE------EEECCSSCEEEEEEC--S-SSSCCEEEEEETTSCEEEEETTS
T ss_pred             ----------------CceEE------EEcCCCCcEEEEEEe--c-CCCceEEEEEeCCCeEEEEECCC
Confidence                            12222      233444445556776  2 22356777888899999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.11  E-value=3.6e-10  Score=101.73  Aligned_cols=115  Identities=15%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNG  107 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~  107 (244)
                      ..+.|++++++|. ||+|+.||.|++||..+. ... .+.++..+|.+|+++|++.++|+++  +.+|+|||..-.  +.
T Consensus       210 ~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~-~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~--~~  285 (435)
T 4e54_B          210 IWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELW-NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV--RG  285 (435)
T ss_dssp             CCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCC-CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC--CS
T ss_pred             ccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeE-EEecccceEEeeeecCCCceEEEEecCcceeeEEecccc--cc
Confidence            3478999999997 999999999999998654 344 4688999999999999999777654  588999997421  10


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                     . ..+.      ...++....+...|+  +   .+..+++++.+..+.+||+..
T Consensus       286 ---------------~-~~~~------~~~~h~~~v~~~~~s--p---dg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          286 ---------------K-ASFL------YSLPHRHPVNAACFS--P---DGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             ---------------S-SCCS------BCCBCSSCEEECCBC--T---TSSEEEEEESSSCEEEEESSS
T ss_pred             ---------------c-ceEE------EeeeccccccceeEC--C---CCCeeEEEcCCCEEEEEECCC
Confidence                           0 0111      122333334455676  2   257899999999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.10  E-value=5.4e-10  Score=96.02  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=88.0

Q ss_pred             CCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           29 RGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      .....++++++++|.+++|+.||.|++||..+.+... .+.++..+|.+++++|||++|++.+ +..|++||..-.....
T Consensus       288 ~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~  366 (425)
T 1r5m_A          288 HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA-LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS  366 (425)
T ss_dssp             CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE-EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--
T ss_pred             CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE-ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce
Confidence            3456899999999999999999999999998776444 4677899999999999999999777 4789999975321000


Q ss_pred             CcccccccccCCCCC-cceeeeeCccchhhcCCcc--ceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          108 TTKTGFNGRMGNKIA-APRLLKLTPLDSHLAGVNN--KFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp-~pr~L~L~Pe~~~~~G~~~--~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                        ..-+...-+.-.| .++.+.      .+.++..  ..+...|+  +   .+..+++++.+..+.+||++
T Consensus       367 --~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s--~---~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          367 --RSLYGNRDGILNPLPIPLYA------SYQSSQDNDYIFDLSWN--C---AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             --------------CEECCEEE------EECCTTCCCCEEEEEEC--T---TSSEEEEEESSSCCEEEECC
T ss_pred             --eeeecccccccCcccchhhh------hhcCcccCCceEEEEcc--C---CCceEEEEecCceEEEEeec
Confidence              0000000000000 011222      2333322  34455665  2   25688899999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.09  E-value=9e-10  Score=95.52  Aligned_cols=128  Identities=12%  Similarity=0.194  Sum_probs=87.5

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccc---cccceecCCCCCCCeeEEEeCCC-CCEEEEeC-CcceEEEEe
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS---MRQAKTAFPGLGSPIRYVDVTYD-GRWILGTT-DTYLILICT  100 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~---~r~aKt~lpglGdPI~~vdvS~D-G~~lLaT~-~~~L~L~dt  100 (244)
                      +.....++|++++++|. ||+|+.||.|++||...   .......+.++..+|.+|+++|| +++|++.+ +..|++||.
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            34556799999999997 99999999999999976   12233357889999999999999 88887776 478999997


Q ss_pred             eeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .-.  ... ...|         .+..+.      .+.++.-..+...|+  +  +....+++++.+..+.+||++.
T Consensus       144 ~~~--~~~-~~~~---------~~~~~~------~~~~~~~~v~~~~~~--~--~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          144 NKC--TES-PSNY---------TPLTPG------QSMSSVDEVISLAWN--Q--SLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             TTT--SSC-TTTC---------CCBCCC------CSCCSSCCCCEEEEC--S--SCTTEEEEESSSSCEEEEETTT
T ss_pred             CCC--ccc-cccc---------cccccc------cccCCCCCeeEEEeC--C--CCCcEEEEEcCCCCEEEEECCC
Confidence            421  000 0000         111111      122333333445665  3  1256788889999999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.08  E-value=1.9e-09  Score=92.58  Aligned_cols=115  Identities=13%  Similarity=0.148  Sum_probs=85.6

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ...+++++++++|. |++|+.||.|++||..+.+... .+.++..+|.+++++||| ++++.+ +..|++||..-     
T Consensus       247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-----  319 (425)
T 1r5m_A          247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN-CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-----  319 (425)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE-EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-----
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce-EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-----
Confidence            45689999999986 9999999999999998776555 467899999999999999 665555 68899999631     


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                                      .+.+.      .+.++....+...|+  +   .+..+++++.+..+.+||++.-.
T Consensus       320 ----------------~~~~~------~~~~~~~~i~~~~~s--~---~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          320 ----------------NTLLA------LSIVDGVPIFAGRIS--Q---DGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             ----------------TEEEE------EEECTTCCEEEEEEC--T---TSSEEEEEETTSCEEEEECHHHH
T ss_pred             ----------------CcEeE------ecccCCccEEEEEEc--C---CCCEEEEEECCCeEEEEECCCCc
Confidence                            11222      122223333444565  2   25788888999999999998765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.08  E-value=1.2e-09  Score=96.30  Aligned_cols=72  Identities=17%  Similarity=0.074  Sum_probs=61.6

Q ss_pred             CCceeEEEecCCC-c-EEEeCCCCcEEEEeccccccceecC-CCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           30 GTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTAF-PGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~l-pglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ....++++++++| . +++|+.||.|++||..+++...++. .++.++|.+|+++|||++|++++ +..|++||..
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  206 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR  206 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence            4568999999998 3 9999999999999998876555432 78999999999999999999887 4779999963

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.08  E-value=2.2e-09  Score=90.47  Aligned_cols=115  Identities=10%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c--------------
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T--------------   93 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~--------------   93 (244)
                      ...+++++++++|. |++|+.||.|++||..+.+...+ ++ ...+|..+.++|||+++++++. .              
T Consensus       218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  295 (369)
T 3zwl_B          218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK-YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF  295 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EE-CSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred             CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee-ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence            45689999999997 99999999999999987765553 44 7889999999999999998774 4              


Q ss_pred             ceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877           94 YLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus        94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      .|++||..                     ....+.      .+.++....+...|+  +   .++.+++++.+..+.+|+
T Consensus       296 ~i~~~d~~---------------------~~~~~~------~~~~~~~~v~~~~~s--~---~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          296 EARFYHKI---------------------FEEEIG------RVQGHFGPLNTVAIS--P---QGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             EEEEEETT---------------------TCCEEE------EEECCSSCEEEEEEC--T---TSSEEEEEETTSEEEEEE
T ss_pred             eeEEEecC---------------------CCcchh------heecccCcEEEEEEC--C---CCCEEEEEcCCCeEEEEE
Confidence            46666642                     111222      233444444555665  3   257888899999999999


Q ss_pred             chhhh
Q 044877          174 FQQVK  178 (244)
Q Consensus       174 ~~kV~  178 (244)
                      +++=.
T Consensus       344 ~~~~~  348 (369)
T 3zwl_B          344 FEKSY  348 (369)
T ss_dssp             ECHHH
T ss_pred             Ccccc
Confidence            98743

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.08  E-value=4.1e-09  Score=95.00  Aligned_cols=71  Identities=10%  Similarity=-0.012  Sum_probs=62.4

Q ss_pred             CCceeEEEecCC---Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           30 GTNFQCFASTGD---GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~---G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ....+|++++|+   |. |++|+.||.||+||..+.+...+.+.++..+|.+++++ ||++|++.+ +.+|+|||..
T Consensus       195 ~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          195 VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred             cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence            356899999999   85 99999999999999987776776678899999999999 999999777 5789999973

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.07  E-value=1e-09  Score=104.75  Aligned_cols=114  Identities=20%  Similarity=0.221  Sum_probs=85.7

Q ss_pred             CCceeEEEecCCC-c-EEEeCCCCcEEEEecccccc----ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           30 GTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQ----AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        30 ~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~----aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      ....+|+++++++ . ||+||.||.||+||......    ....+.+|..+|.+|+++|||++|++.+ +..|+|||..-
T Consensus       382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~  461 (694)
T 3dm0_A          382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA  461 (694)
T ss_dssp             SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            4558999999865 3 99999999999999854321    2234678999999999999999999877 57899999631


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                                           .+.++      .+.||.-..+...|+  +   .+..++++|.+..+.+||+.
T Consensus       462 ---------------------~~~~~------~~~~h~~~v~~~~~s--~---~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          462 ---------------------GVSTR------RFVGHTKDVLSVAFS--L---DNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             ---------------------TEEEE------EEECCSSCEEEEEEC--T---TSSCEEEEETTSCEEEECTT
T ss_pred             ---------------------Cccee------EEeCCCCCEEEEEEe--C---CCCEEEEEeCCCEEEEEECC
Confidence                                 12222      344555555566776  2   25789999999999999964

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.07  E-value=2e-09  Score=91.32  Aligned_cols=121  Identities=13%  Similarity=0.160  Sum_probs=85.3

Q ss_pred             CCCceeEEEecC-------------CCc-EEEeCCCCcEEEEecccccc---ceecCCCCCCCeeEEEeCCC---CCEEE
Q 044877           29 RGTNFQCFASTG-------------DGS-IVVGSLDGKIRLYSSNSMRQ---AKTAFPGLGSPIRYVDVTYD---GRWIL   88 (244)
Q Consensus        29 ~~~~Ft~vats~-------------~G~-IavGS~dG~IRLyD~~~~r~---aKt~lpglGdPI~~vdvS~D---G~~lL   88 (244)
                      ....+++++++|             +|. |++|+.||.||+||..+.+.   ....+.++..+|.+++++||   |++|+
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~  225 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  225 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence            345689999999             466 99999999999999875432   22356789999999999999   89998


Q ss_pred             EeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCC
Q 044877           89 GTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGK  167 (244)
Q Consensus        89 aT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~  167 (244)
                      +.+ +..|+|||..-.  .                .+....+.    ...++....+...|+  +   .++.+++++.+.
T Consensus       226 s~~~dg~i~iwd~~~~--~----------------~~~~~~~~----~~~~~~~~v~~~~~s--~---~g~~l~~~~~dg  278 (379)
T 3jrp_A          226 SVSQDRTCIIWTQDNE--Q----------------GPWKKTLL----KEEKFPDVLWRASWS--L---SGNVLALSGGDN  278 (379)
T ss_dssp             EEETTSCEEEEEESST--T----------------SCCEEEES----SSSCCSSCEEEEEEC--S---SSCCEEEEESSS
T ss_pred             EEeCCCEEEEEeCCCC--C----------------ccceeeee----ccccCCCcEEEEEEc--C---CCCEEEEecCCC
Confidence            777 577999997421  0                11111111    112233334455665  2   257888899999


Q ss_pred             eEEEEechh
Q 044877          168 FSVIWNFQQ  176 (244)
Q Consensus       168 fvvvWn~~k  176 (244)
                      .+.+|++..
T Consensus       279 ~i~iw~~~~  287 (379)
T 3jrp_A          279 KVTLWKENL  287 (379)
T ss_dssp             SEEEEEEEE
T ss_pred             cEEEEeCCC
Confidence            999999973

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.07  E-value=9.7e-10  Score=95.29  Aligned_cols=118  Identities=12%  Similarity=0.139  Sum_probs=86.8

Q ss_pred             CCceeEEEecCCC-c-EEEeCCCC---cEEEEeccccccceecCC-CCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEee
Q 044877           30 GTNFQCFASTGDG-S-IVVGSLDG---KIRLYSSNSMRQAKTAFP-GLGSPIRYVDVTY-DGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G-~-IavGS~dG---~IRLyD~~~~r~aKt~lp-glGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ...+++++++|+| . +++|+.||   .|++||..+.+.....+. ++..+|.+++++| ||++|++.+ +..|+|||..
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence            5679999999997 3 99999999   999999987543434566 8999999999999 999998777 5789999963


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                      -                     .+.+.      .+.++....+...|+  +  +....+++++.+..+.+||+....
T Consensus       294 ~---------------------~~~~~------~~~~~~~~v~~~~~s--~--~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          294 S---------------------AEQLS------QFPARGNWCFKTKFA--P--EAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             S---------------------CCEEE------EEECSSSCCCCEEEC--T--TCTTEEEECCSSSEEEEEESCCCC
T ss_pred             C---------------------Cccce------eecCCCCceEEEEEC--C--CCCCEEEEEecCCcEEEEEccCCC
Confidence            1                     11222      122333333344565  3  213688888899999999998654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.5e-09  Score=96.11  Aligned_cols=131  Identities=10%  Similarity=0.082  Sum_probs=84.3

Q ss_pred             CceeEEEecC-CCc-EEEeCCCCcEEEEeccc---cccceecCC-CCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877           31 TNFQCFASTG-DGS-IVVGSLDGKIRLYSSNS---MRQAKTAFP-GLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        31 ~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~---~r~aKt~lp-glGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      ..++|+++++ +|. ||+||.||.||+||..+   ....+..+. ++..+|++|+++|||++|++.+ +..|+|||....
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~  143 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY  143 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc
Confidence            5699999999 886 99999999999999865   211111112 5899999999999999999777 578999998531


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      . .++    ..+.+..  ..-+.+.+.|..     +........|.+.   ..+..+++++.+..+.+||++.
T Consensus       144 ~-~~~----~~~~~~~--~~i~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          144 Q-QES----EVKFLNC--ECIRKINLKNFG-----KNEYAVRMRAFVN---EEKSLLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             E-ETT----EEEEEEE--EEEEEEEGGGGS-----SCCCEEEEEEEEC---SSCEEEEEEETTSEEEEEETTT
T ss_pred             c-CCc----eeecccc--ceeEEEEccCcc-----cccCceEEEEEEc---CCCCEEEEEeCCCeEEEEeCCC
Confidence            0 010    0000000  012233333321     1222233343332   2367899999999999999865

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.06  E-value=1.4e-09  Score=97.95  Aligned_cols=134  Identities=16%  Similarity=0.227  Sum_probs=88.4

Q ss_pred             CCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeecc
Q 044877           29 RGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTD  104 (244)
Q Consensus        29 ~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~  104 (244)
                      .....+|++++++|.  +|+|+.||.|++||.+..+.....+.++..+|++|.++|||+++|+++  ++.|+|||..-..
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            345689999999885  889999999999999864433335678999999999999998655554  5789999975311


Q ss_pred             CCCCccccccccc-CCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcc-eEEEEeeCCeEEEEechhhhcCC
Q 044877          105 KNGTTKTGFNGRM-GNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQE-RHLVATVGKFSVIWNFQQVKNGS  181 (244)
Q Consensus       105 ~~~~~~~GF~~~~-~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E-~~IvtStG~fvvvWn~~kV~~g~  181 (244)
                         .     .... ......|.++.      .+.|+....+  .|.|.+   .+. .+++++.++.+.+|++.+-+-+.
T Consensus       356 ---~-----~~~~~~~~~~~~~~~~------~~~~h~~~v~--~~~~~p---~~~~~l~s~s~dg~i~iw~~~~~~~~~  415 (430)
T 2xyi_A          356 ---E-----EQSTEDAEDGPPELLF------IHGGHTAKIS--DFSWNP---NEPWIICSVSEDNIMQVWQMAENVYND  415 (430)
T ss_dssp             ---C-----CCCHHHHHHCCTTEEE------ECCCCSSCEE--EEEECS---SSTTEEEEEETTSEEEEEEECHHHHCC
T ss_pred             ---c-----ccCccccccCCcceEE------EcCCCCCCce--EEEECC---CCCCEEEEEECCCCEEEeEcccccccC
Confidence               0     0000 00111233444      2233333223  344433   134 78888999999999997655443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.1e-09  Score=90.70  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~  107 (244)
                      ...++|+++ ++|. +|+|+.||.|++||..+.+... .+.++..+|.+++++|||++|++.+. ..|++|+..-..   
T Consensus        18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---   92 (313)
T 3odt_A           18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT-VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS---   92 (313)
T ss_dssp             SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE-EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT---
T ss_pred             CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE-EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC---
Confidence            456899999 6654 9999999999999997765444 56778999999999999999998774 779999964210   


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                                     .++.+.      .+.++....+...|+       +..+++++.+..+.+||
T Consensus        93 ---------------~~~~~~------~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~~~d  130 (313)
T 3odt_A           93 ---------------GEDPLY------TLIGHQGNVCSLSFQ-------DGVVISGSWDKTAKVWK  130 (313)
T ss_dssp             ---------------TSCC-C------EECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEE
T ss_pred             ---------------CCCccc------chhhcccCEEEEEec-------CCEEEEEeCCCCEEEEc
Confidence                           111111      122333333333443       46899999999999999

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.05  E-value=2.2e-09  Score=93.28  Aligned_cols=117  Identities=8%  Similarity=0.030  Sum_probs=84.2

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC-EEEEeC-CcceEEEEeeeccCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR-WILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~-~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ..+++++++++|. ||+|+.||.|++||.. .+... .+.++..+|.+|+++|||+ +|++.+ +.+|++||..-.  + 
T Consensus       164 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~-  238 (383)
T 3ei3_B          164 YWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF-KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI--K-  238 (383)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE-EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGC--C-
T ss_pred             CCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE-EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC--C-
Confidence            5589999999988 9999999999999984 33444 4678999999999999999 555444 578999997521  0 


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                    +....+.       ..++.-..+...|+  +.  .+..+++++.+..+.+||++.-
T Consensus       239 --------------~~~~~~~-------~~~~~~~v~~~~~s--~~--~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          239 --------------DKNSYIA-------EMPHEKPVNAAYFN--PT--DSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             --------------STTCEEE-------EEECSSCEEEEEEC--TT--TSCEEEEEESSSEEEEEETTBT
T ss_pred             --------------cccceEE-------EecCCCceEEEEEc--CC--CCCEEEEEcCCCcEEEEECCCC
Confidence                          1112222       11233344555666  21  2578889999999999998753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.04  E-value=5.4e-10  Score=106.64  Aligned_cols=116  Identities=9%  Similarity=-0.025  Sum_probs=81.6

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEE--EeCCCC-CEEEEeC-CcceEEEEeeeccCC
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYV--DVTYDG-RWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~v--dvS~DG-~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      ..++|+++++++.||+||.||.|||||..+.+.....++++..+|.+|  .+++|| ++|++++ +.+|+|||.+-.   
T Consensus       267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~---  343 (524)
T 2j04_B          267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI---  343 (524)
T ss_dssp             TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH---
T ss_pred             CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC---
Confidence            568999999988899999999999999976544444578999999999  578998 6666555 688999997410   


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                         +            .++.+.   .|  ..+.  +-....|+  + .  ...+++++.+..+.+||++.
T Consensus       344 ---~------------~~~~~~---~~--~~~~--~v~~v~fs--p-~--~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          344 ---A------------TTKTTV---SR--FRGS--NLVPVVYC--P-Q--IYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             ---H------------HHCEEE---EE--CSCC--SCCCEEEE--T-T--TTEEEEECSSSEEEEEETTC
T ss_pred             ---C------------cccccc---cc--cccC--cccceEeC--C-C--cCeEEEeCCCCcEEEEECcc
Confidence               0            011111   11  1111  12344666  3 1  45688888899999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.04  E-value=3.5e-09  Score=90.55  Aligned_cols=122  Identities=11%  Similarity=0.102  Sum_probs=84.6

Q ss_pred             CCceeEEEecCC--Cc-EEEeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCC-------------CCEEEEeC-
Q 044877           30 GTNFQCFASTGD--GS-IVVGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYD-------------GRWILGTT-   91 (244)
Q Consensus        30 ~~~Ft~vats~~--G~-IavGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~D-------------G~~lLaT~-   91 (244)
                      ...+.+++++|+  |. ||+||.||.||+||...... ....+.++..+|.+++++|+             +++|++.+ 
T Consensus        99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~  178 (297)
T 2pm7_B           99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA  178 (297)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET
T ss_pred             CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC
Confidence            345899999996  65 99999999999999865421 13346789999999999997             56777665 


Q ss_pred             CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEE
Q 044877           92 DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVI  171 (244)
Q Consensus        92 ~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvv  171 (244)
                      +.+|+|||..-.  .               +....+.      .+.||...-....|+  +.......++++|.+..+.+
T Consensus       179 D~~v~lwd~~~~--~---------------~~~~~~~------~l~~H~~~V~~v~~s--p~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          179 DNLVKIWKYNSD--A---------------QTYVLES------TLEGHSDWVRDVAWS--PTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             TSCEEEEEEETT--T---------------TEEEEEE------EECCCSSCEEEEEEC--CCCSSSEEEEEEETTSCEEE
T ss_pred             CCcEEEEEEcCC--C---------------ceEEEEE------EecCCCCceEEEEEC--CCCCCceEEEEEECCCcEEE
Confidence            688999997420  0               0111222      244555444555676  21111367888899999999


Q ss_pred             Eechh
Q 044877          172 WNFQQ  176 (244)
Q Consensus       172 Wn~~k  176 (244)
                      ||++.
T Consensus       234 Wd~~~  238 (297)
T 2pm7_B          234 WTQDN  238 (297)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            99865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.04  E-value=2.7e-09  Score=94.15  Aligned_cols=111  Identities=14%  Similarity=0.094  Sum_probs=78.8

Q ss_pred             eeEEEecCCCcEEE--eCCCCcEEEEeccccc----------------cceecCCCCCCCeeEEEeCCCCCEEEEeC-Cc
Q 044877           33 FQCFASTGDGSIVV--GSLDGKIRLYSSNSMR----------------QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DT   93 (244)
Q Consensus        33 Ft~vats~~G~Iav--GS~dG~IRLyD~~~~r----------------~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~   93 (244)
                      ...+++++ ..+|+  |+.||.|++||..+.+                +.+ .+.+|.++|++|+++|||++|++.+ +.
T Consensus       140 ~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~-~~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          140 GGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV-LIKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCE-EECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             CceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE-EEEccCCceEEEEECCCCCEEEEEeCCC
Confidence            34455555 45555  7999999999997643                133 4789999999999999999998777 57


Q ss_pred             c-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhc-C-CccceeeeeeeeecCCCCcceEEEEeeCCeEE
Q 044877           94 Y-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLA-G-VNNKFHKAQFSWVTENGKQERHLVATVGKFSV  170 (244)
Q Consensus        94 ~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~-G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvv  170 (244)
                      + |+|||..-                     .+.+.      .+. | +....+...|+  +   .+..++++|.+..+.
T Consensus       218 ~~v~iwd~~~---------------------~~~~~------~~~~g~h~~~v~~~~~s--~---~~~~l~s~s~d~~v~  265 (355)
T 3vu4_A          218 TIIRVFKTED---------------------GVLVR------EFRRGLDRADVVDMKWS--T---DGSKLAVVSDKWTLH  265 (355)
T ss_dssp             SEEEEEETTT---------------------CCEEE------EEECTTCCSCEEEEEEC--T---TSCEEEEEETTCEEE
T ss_pred             CEEEEEECCC---------------------CcEEE------EEEcCCCCCcEEEEEEC--C---CCCEEEEEECCCEEE
Confidence            7 99999731                     11222      222 3 44445566776  2   257888999999999


Q ss_pred             EEechhh
Q 044877          171 IWNFQQV  177 (244)
Q Consensus       171 vWn~~kV  177 (244)
                      +||++.-
T Consensus       266 iw~~~~~  272 (355)
T 3vu4_A          266 VFEIFND  272 (355)
T ss_dssp             EEESSCC
T ss_pred             EEEccCC
Confidence            9999764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.04  E-value=3.1e-09  Score=91.11  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=80.8

Q ss_pred             CCceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecC------------CCCCCCeeEEEeCC-CCCEEEEeC-Cc
Q 044877           30 GTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAF------------PGLGSPIRYVDVTY-DGRWILGTT-DT   93 (244)
Q Consensus        30 ~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~l------------pglGdPI~~vdvS~-DG~~lLaT~-~~   93 (244)
                      ...++|++++| +|. ||+|+.||.|++||..+.+...+..            .++..+|.+|+++| ++++|++.+ +.
T Consensus        43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred             CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence            45799999999 887 9999999999999997654333221            36899999999999 777777666 57


Q ss_pred             ceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877           94 YLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus        94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      .|++||..-                     .+.++.      +. .........|..  .......+++++.+..+.+||
T Consensus       123 ~i~iwd~~~---------------------~~~~~~------~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B          123 TLKVWDTNT---------------------LQTADV------FN-FEETVYSHHMSP--VSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             EEEEEETTT---------------------TEEEEE------EE-CSSCEEEEEECS--SCSSCCEEEEEESSSSEEEEE
T ss_pred             eEEEeeCCC---------------------Ccccee------cc-CCCceeeeEeec--CCCCCcEEEEEcCCCeEEEEe
Confidence            899999631                     011110      00 111122334442  122356888899999999999


Q ss_pred             chh
Q 044877          174 FQQ  176 (244)
Q Consensus       174 ~~k  176 (244)
                      ++.
T Consensus       173 ~~~  175 (408)
T 4a11_B          173 LKS  175 (408)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.04  E-value=1.4e-09  Score=103.33  Aligned_cols=117  Identities=18%  Similarity=0.186  Sum_probs=89.9

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCC
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKN  106 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~  106 (244)
                      ...+.++++++|+|. ||+|+.||.|++||..+++... .+.++.++|++++++|||++|++.+. ..|++||..-    
T Consensus        54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~----  128 (814)
T 3mkq_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----  128 (814)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG----
T ss_pred             CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC----
Confidence            455699999999997 9999999999999998776555 46889999999999999999987774 7899999631    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      .....+      .+.++....+...|+  +  ..+..+++++.+..+.+||+..
T Consensus       129 ----------------~~~~~~------~~~~~~~~v~~~~~~--p--~~~~~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          129 ----------------NWALEQ------TFEGHEHFVMCVAFN--P--KDPSTFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             ----------------TSEEEE------EEECCSSCEEEEEEE--T--TEEEEEEEEETTSEEEEEETTC
T ss_pred             ----------------CceEEE------EEcCCCCcEEEEEEE--c--CCCCEEEEEeCCCeEEEEECCC
Confidence                            001122      233445555666776  2  1257888889999999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.04  E-value=3.2e-09  Score=94.85  Aligned_cols=108  Identities=13%  Similarity=0.123  Sum_probs=77.8

Q ss_pred             eEEEecCCCcEEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877           34 QCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        34 t~vats~~G~IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~  111 (244)
                      ++++.++++.||+|. |+.|||||..+++..++ .+.+++++|++|+++|||++|++.+ +..|+|||..          
T Consensus       109 ~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~----------  177 (420)
T 4gga_A          109 NLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ----------  177 (420)
T ss_dssp             BCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT----------
T ss_pred             eeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC----------
Confidence            568888876688875 99999999988765553 2467889999999999999999776 5789999963          


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                 ..++++      .+.|+.....  .+.|.     ...+++++.+..+.+||...
T Consensus       178 -----------~~~~~~------~~~~h~~~v~--~~s~~-----~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          178 -----------QQKRLR------NMTSHSARVG--SLSWN-----SYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             -----------TTEEEE------EECCCSSCEE--EEEEE-----TTEEEEEETTSEEEEEETTS
T ss_pred             -----------CCcEEE------EEeCCCCceE--EEeeC-----CCEEEEEeCCCceeEeeecc
Confidence                       112333      2334433222  34432     36788888889999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.04  E-value=1.3e-09  Score=97.45  Aligned_cols=137  Identities=12%  Similarity=0.042  Sum_probs=82.3

Q ss_pred             CCceeEEEecC--------CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEE
Q 044877           30 GTNFQCFASTG--------DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILI   98 (244)
Q Consensus        30 ~~~Ft~vats~--------~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~   98 (244)
                      ...+.+|+++|        +|+ ||+||.|+.|||||..+.....+ +.++..+|.+|+++|++..+|++ + +.+|+||
T Consensus       136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~w  214 (393)
T 4gq1_A          136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIF  214 (393)
T ss_dssp             SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE-EEECSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee-ecCCCCCcEEEEECCCCCceEEecCCCCEEEEE
Confidence            34589999987        777 99999999999999876554543 44688999999999999755544 3 5789999


Q ss_pred             EeeeccCCCCcccccccccCCCCCcceeeeeCccch----hhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877           99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDS----HLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus        99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~----~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                      |..-....    .-.....  .......+.+.+...    ...|+.-......|.  ..  .++.++.++.++.+.+||+
T Consensus       215 d~~t~~~~----~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~--~~--dg~~l~s~s~d~~i~vwd~  284 (393)
T 4gq1_A          215 DWTLNLSA----EENSQTE--LVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI--GS--DGSGILAMCKSGAWLRWNL  284 (393)
T ss_dssp             ETTCCC----------------CSCCCSEEEESGGGC------CCSSSCSEEEEE--TT--TTCEEEEECTTSEEEEEEC
T ss_pred             ECCCCccc----ccccccC--CcccceEEecccccceeeeecccccccceeeeee--cC--CCCEEEEEeCCCCEEEEEC
Confidence            97532100    0011000  001111222222111    122333333344554  22  2678999999999999998


Q ss_pred             hhh
Q 044877          175 QQV  177 (244)
Q Consensus       175 ~kV  177 (244)
                      ..-
T Consensus       285 ~~~  287 (393)
T 4gq1_A          285 FAN  287 (393)
T ss_dssp             ---
T ss_pred             ccC
Confidence            653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.02  E-value=1.9e-09  Score=91.03  Aligned_cols=112  Identities=10%  Similarity=0.044  Sum_probs=84.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccc---cceecCCCCCCCeeEEEeCCCCC-EEEEeC-CcceEEEEe-ee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR---QAKTAFPGLGSPIRYVDVTYDGR-WILGTT-DTYLILICT-LF  102 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r---~aKt~lpglGdPI~~vdvS~DG~-~lLaT~-~~~L~L~dt-~~  102 (244)
                      ....+|++++++|. ||+|+.||.|++||..+.+   ..+ .+.++..+|.+++++|||+ +|++.+ +..|++||. .-
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~   89 (342)
T 1yfq_A           11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL-QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS   89 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE-EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccce-eeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC
Confidence            45689999999987 9999999999999987654   133 2447899999999999999 888776 578999996 31


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcC--CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAG--VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G--~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .                   ..+         .+.+  +....+...|+  +    ...+++++.+..+.+||++.
T Consensus        90 ~-------------------~~~---------~~~~~~~~~~v~~l~~~--~----~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           90 P-------------------SFQ---------ALTNNEANLGICRICKY--G----DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             S-------------------SEE---------ECBSCCCCSCEEEEEEE--T----TTEEEEEETTSEEEEECHHH
T ss_pred             C-------------------ceE---------eccccCCCCceEEEEeC--C----CCEEEEEcCCCeEEEEcccc
Confidence            0                   011         1223  44444555666  2    57899999999999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.01  E-value=3.6e-09  Score=91.96  Aligned_cols=116  Identities=10%  Similarity=0.085  Sum_probs=83.6

Q ss_pred             CCceeEEEecCCC-c-EEEeCCCCcEEEEeccccccceec-CCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEeeecc
Q 044877           30 GTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTA-FPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        30 ~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~-lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      ...++|++++++| . ||+|+.||.||+||..+.+..... +.++..+|.+|+++| |+++|++.+ +..|++||..   
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---  149 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS---  149 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT---
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC---
Confidence            4569999999998 4 999999999999999866544322 247999999999999 778888776 5789999963   


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                        +              ...+.+.      ...++....+...|+  +   .+..+++++.+..+.+||++
T Consensus       150 --~--------------~~~~~~~------~~~~~~~~v~~~~~~--~---~~~~l~~~~~d~~i~i~d~~  193 (383)
T 3ei3_B          150 --G--------------SVIQVFA------KTDSWDYWYCCVDVS--V---SRQMLATGDSTGRLLLLGLD  193 (383)
T ss_dssp             --S--------------CEEEEEE------CCCCSSCCEEEEEEE--T---TTTEEEEEETTSEEEEEETT
T ss_pred             --C--------------CceEEEe------ccCCCCCCeEEEEEC--C---CCCEEEEECCCCCEEEEECC
Confidence              0              0112222      111222334455666  2   25789999999999999983

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.99  E-value=5.6e-09  Score=93.10  Aligned_cols=131  Identities=18%  Similarity=0.240  Sum_probs=86.4

Q ss_pred             CCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeC--CCCCEEEEeC-CcceEEEEeeeccC
Q 044877           29 RGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT--YDGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS--~DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      -...++++++++++.+|+|+.||.|++||..+++... .+.++.++|.+++++  +|+++|++.+ +.+|++||..-.. 
T Consensus       161 h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-  238 (464)
T 3v7d_B          161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH-VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES-  238 (464)
T ss_dssp             CSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC-
T ss_pred             CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEE-EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc-
Confidence            3456899999999999999999999999998876555 578899999999998  6889998777 5889999975311 


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccch-----hhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDS-----HLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~-----~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                       .....+..      ...+. ....|+..     .+.|+.....  .++.     .+..+++++.+..+.+||++.
T Consensus       239 -~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~v~--~~~~-----~~~~l~~~~~d~~i~vwd~~~  299 (464)
T 3v7d_B          239 -SVPDHGEE------HDYPL-VFHTPEENPYFVGVLRGHMASVR--TVSG-----HGNIVVSGSYDNTLIVWDVAQ  299 (464)
T ss_dssp             -CC------------CCSSE-EESCGGGCTTEEEEECCCSSCEE--EEEE-----ETTEEEEEETTSCEEEEETTT
T ss_pred             -cccccccc------CCcce-EeeccCCCeEEEEEccCccceEE--EEcC-----CCCEEEEEeCCCeEEEEECCC
Confidence             10000010      01111 11112111     2233332111  2221     257899999999999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.97  E-value=2.6e-09  Score=90.11  Aligned_cols=118  Identities=10%  Similarity=0.031  Sum_probs=80.0

Q ss_pred             CCceeEEEecCCCc--EEEeCC---CCcEEEEeccccccceecCCCCCCCeeEEEeCCC---CCEEEEeC-CcceEEEEe
Q 044877           30 GTNFQCFASTGDGS--IVVGSL---DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD---GRWILGTT-DTYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~--IavGS~---dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D---G~~lLaT~-~~~L~L~dt  100 (244)
                      ...+++++++|+|.  +++|+.   ||.|++||..+.+.......++.++|.+++++||   |++|++.+ +..|++||.
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            44689999999884  678887   9999999997765443333468899999999999   79888777 577999996


Q ss_pred             eeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeee----eecCCCCcceEEEEeeCCeEEEEechh
Q 044877          101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFS----WVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn----~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .-    ++                ..++      .+.++....+...|.    |.+   .++.+++++.+..+.+||++.
T Consensus        98 ~~----~~----------------~~~~------~~~~~~~~v~~~~~~~~~~~s~---~~~~l~~~~~d~~i~vwd~~~  148 (357)
T 3i2n_A           98 EA----PE----------------MPVY------SVKGHKEIINAIDGIGGLGIGE---GAPEIVTGSRDGTVKVWDPRQ  148 (357)
T ss_dssp             TS----CS----------------SCSE------EECCCSSCEEEEEEESGGGCC----CCCEEEEEETTSCEEEECTTS
T ss_pred             CC----CC----------------ccEE------EEEecccceEEEeeccccccCC---CccEEEEEeCCCeEEEEeCCC
Confidence            41    00                0111      122232222222221    112   257888899999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.97  E-value=8.5e-09  Score=91.91  Aligned_cols=112  Identities=12%  Similarity=0.159  Sum_probs=81.9

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~  111 (244)
                      .+|++.+++ .||+||.||.||+||..+++..+ .++++..+|.++++++|+ +|++.+ +.+|++||..-         
T Consensus       125 ~~~~~~~~~-~l~sgs~dg~i~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~---------  192 (464)
T 3v7d_B          125 ITCLQFEDN-YVITGADDKMIRVYDSINKKFLL-QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK---------  192 (464)
T ss_dssp             EEEEEEETT-EEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT---------
T ss_pred             EEEEEECCC-EEEEEcCCCcEEEEECCCCcEEE-EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC---------
Confidence            578777653 79999999999999998876555 578999999999999999 555444 68899999631         


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                  .+.+.      .+.++.-..+...|+..   ..+..+++++.+..+.+||+..-
T Consensus       193 ------------~~~~~------~~~~h~~~v~~l~~~~~---~~~~~l~s~s~d~~i~vwd~~~~  237 (464)
T 3v7d_B          193 ------------GCCTH------VFEGHNSTVRCLDIVEY---KNIKYIVTGSRDNTLHVWKLPKE  237 (464)
T ss_dssp             ------------TEEEE------EECCCSSCEEEEEEEES---SSCEEEEEEETTSCEEEEECCCC
T ss_pred             ------------CcEEE------EECCCCCccEEEEEecC---CCCCEEEEEcCCCcEEEeeCCCC
Confidence                        11222      23344444445566632   23578999999999999998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.95  E-value=1.3e-08  Score=87.96  Aligned_cols=123  Identities=12%  Similarity=0.047  Sum_probs=85.1

Q ss_pred             CCceeEEEecCC--Cc-EEEeCCCCcEEEEecccccc--ceecCCCCCCCeeEEEeCCC-----------------CCEE
Q 044877           30 GTNFQCFASTGD--GS-IVVGSLDGKIRLYSSNSMRQ--AKTAFPGLGSPIRYVDVTYD-----------------GRWI   87 (244)
Q Consensus        30 ~~~Ft~vats~~--G~-IavGS~dG~IRLyD~~~~r~--aKt~lpglGdPI~~vdvS~D-----------------G~~l   87 (244)
                      ...+.+++++|+  |. ||+||.||.||+||......  .+..+.++..+|.+++++|+                 +++|
T Consensus       103 ~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (316)
T 3bg1_A          103 DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF  182 (316)
T ss_dssp             SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBE
T ss_pred             CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceE
Confidence            345889999997  65 99999999999999875421  23457889999999999998                 4677


Q ss_pred             EEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeC
Q 044877           88 LGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVG  166 (244)
Q Consensus        88 LaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG  166 (244)
                      ++.+ +.+|+|||..-   .               ...+.++      .+.||...-....|+.. +......++++|.+
T Consensus       183 ~sgs~D~~v~lWd~~~---~---------------~~~~~~~------~l~~h~~~V~~v~~sp~-~~~~~~~las~s~D  237 (316)
T 3bg1_A          183 ASGGCDNLIKLWKEEE---D---------------GQWKEEQ------KLEAHSDWVRDVAWAPS-IGLPTSTIASCSQD  237 (316)
T ss_dssp             ECCBTTSBCCEEEECT---T---------------SCEEEEE------CCBCCSSCEEEEECCCC-SSCSCCEEEEEETT
T ss_pred             EEecCCCeEEEEEeCC---C---------------Cccceee------ecccCCCceEEEEecCC-CCCCCceEEEEcCC
Confidence            7665 58899999631   0               0112222      34455443445566621 10123678889999


Q ss_pred             CeEEEEechhh
Q 044877          167 KFSVIWNFQQV  177 (244)
Q Consensus       167 ~fvvvWn~~kV  177 (244)
                      ..+.+|+++.-
T Consensus       238 ~~v~iw~~~~~  248 (316)
T 3bg1_A          238 GRVFIWTCDDA  248 (316)
T ss_dssp             CEEEEEECSST
T ss_pred             CeEEEEEccCc
Confidence            99999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.95  E-value=1.1e-08  Score=92.94  Aligned_cols=120  Identities=8%  Similarity=0.084  Sum_probs=85.2

Q ss_pred             CCCceeEEEecCCCcEEEeCC-CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           29 RGTNFQCFASTGDGSIVVGSL-DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavGS~-dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      .....++++++ ...+++|+. ||.|++||..+.+.....++++..+|+++++||||++|++.+ +..|++||..-    
T Consensus       445 ~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~----  519 (615)
T 1pgu_A          445 LNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS----  519 (615)
T ss_dssp             CSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----
T ss_pred             cCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC----
Confidence            45668899999 335999999 999999999776432135788999999999999999999887 47799999731    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcC-Cccceeeeeeeee-----cCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAG-VNNKFHKAQFSWV-----TENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G-~~~~Ft~akFn~~-----tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                       .+.+.      .+.+ +....+...|+..     .+...+..+++++.+..+.+||++.
T Consensus       520 -----------------~~~~~------~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~  572 (615)
T 1pgu_A          520 -----------------REVKT------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  572 (615)
T ss_dssp             -----------------TEEEE------CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             -----------------Cccee------EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence                             11222      1222 3333445566520     0011367888899999999999964

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=98.95  E-value=1.9e-09  Score=96.39  Aligned_cols=109  Identities=14%  Similarity=0.082  Sum_probs=75.4

Q ss_pred             EecCCCc-EEEeCCCCcEEEEeccccccc----eecCCCCCCCeeEEEeCC--------CCCEEEEeC-CcceEEEEeee
Q 044877           37 ASTGDGS-IVVGSLDGKIRLYSSNSMRQA----KTAFPGLGSPIRYVDVTY--------DGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        37 ats~~G~-IavGS~dG~IRLyD~~~~r~a----Kt~lpglGdPI~~vdvS~--------DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      +.++++. ||+||.|+.|||||..++...    ...+.||.++|.+|+++|        ||++|++.+ +.+|+|||..-
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            3344555 999999999999998654321    224789999999999998        999998776 58899999742


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .                   . ..+.       ..++.-.-....|+  +  +....+++++.+..+.+||++.
T Consensus       176 ~-------------------~-~~~~-------~~~~~~~v~~v~~~--p--~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          176 E-------------------G-PILA-------GYPLSSPGISVQFR--P--SNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             T-------------------E-EEEE-------EEECSSCEEEEEEE--T--TEEEEEEEEETTSEEEEEETTC
T ss_pred             C-------------------c-eeee-------ecCCCCCcEEEEEC--C--CCCceEEecCCCCEEEEEECCC
Confidence            0                   0 1111       11222222345676  3  2245788999999999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.95  E-value=5.1e-09  Score=102.28  Aligned_cols=119  Identities=14%  Similarity=0.130  Sum_probs=87.9

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEecc--ccccceecCCCCCCCeeEEEeCCC--CCEEEEeC-CcceEEEEeeec
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSN--SMRQAKTAFPGLGSPIRYVDVTYD--GRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~--~~r~aKt~lpglGdPI~~vdvS~D--G~~lLaT~-~~~L~L~dt~~~  103 (244)
                      ...++|++++++|. ||+|+.||.|++||..  +.+... .+.++.++|++|+++|+  |++|++.+ +..|++||..- 
T Consensus         9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~-~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~-   86 (753)
T 3jro_A            9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID-TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-   86 (753)
T ss_dssp             CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEE-EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET-
T ss_pred             cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccce-eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC-
Confidence            35689999999997 9999999999999986  333333 57889999999999998  99998776 57899999741 


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                         +               .+..+.      .+.++....+...|+  +. +.+..+++++.+..+.+||++.-
T Consensus        87 ---~---------------~~~~~~------~~~~h~~~V~~v~~s--p~-~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           87 ---G---------------RWSQIA------VHAVHSASVNSVQWA--PH-EYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             ---T---------------EEEEEE------EECCCSSCEEEEEEC--CG-GGCSEEEEEETTSEEEEEECCSS
T ss_pred             ---C---------------cccccc------cccCCCCCeEEEEEC--CC-CCCCEEEEEeCCCcEEEEEeecC
Confidence               0               111222      233444445556676  21 11578999999999999998753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.95  E-value=7e-09  Score=93.48  Aligned_cols=114  Identities=13%  Similarity=0.136  Sum_probs=84.7

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccce---ecCCCCCCCeeEEEeCCC---CCEEEEeCC-cceEEEEeee
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAK---TAFPGLGSPIRYVDVTYD---GRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aK---t~lpglGdPI~~vdvS~D---G~~lLaT~~-~~L~L~dt~~  102 (244)
                      ...++++++|+|. |++|+.+|.|++||....+..+   ..+.++..+|.+|+++||   |++|++++. ..|++||..-
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            5578999999997 9999999999999987654321   246788999999999999   999998875 7799999631


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                           ...+.     ..+.|+.-..+...|+    +  +..+++++.+..|.+||++.
T Consensus       230 ---------------------~~~~~-----~~~~~h~~~v~~~~~s----d--~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          230 ---------------------CFIVD-----KWLFGHKHFVSSICCG----K--DYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             ---------------------TTCEE-----EECCCCSSCEEEEEEC----S--TTEEEEEESSSEEEEEETTT
T ss_pred             ---------------------Cceee-----eeecCCCCceEEEEEC----C--CCEEEEEeCCCeEEEEECCC
Confidence                                 01111     0122444334455665    1  57899999999999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.95  E-value=4.1e-09  Score=104.03  Aligned_cols=120  Identities=9%  Similarity=0.009  Sum_probs=83.4

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCC-----CeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGS-----PIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGd-----PI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      .....+++.||+|+ ||++|.||.|++||..+  +..+ +. +..     .|.+|++||||++|++++ +.+|+|||..-
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~-l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN-LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE-CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee-cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            45599999999999 99999999999999744  3442 45 444     499999999999999888 58899999741


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                        ++      .        ..|+-+.++.-+.+..||......-.|+  +  + +  .++++.|+.|.+||+..
T Consensus       161 --~~------l--------~~~~~i~l~ti~~~~~gh~~~V~sVawS--P--d-g--Laass~D~tVrlWd~~~  211 (588)
T 2j04_A          161 --NS------E--------NTPEFYFESSIRLSDAGSKDWVTHIVWY--E--D-V--LVAALSNNSVFSMTVSA  211 (588)
T ss_dssp             --CT------T--------TCCCCEEEEEEECSCTTCCCCEEEEEEE--T--T-E--EEEEETTCCEEEECCCS
T ss_pred             --Cc------c--------ccccceeeeeeecccccccccEEEEEEc--C--C-c--EEEEeCCCeEEEEECCC
Confidence              00      0        0122111111111234454455556666  3  2 3  88999999999999854

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.92  E-value=6.2e-09  Score=96.01  Aligned_cols=114  Identities=9%  Similarity=0.005  Sum_probs=82.4

Q ss_pred             CCceeEEEecCCCc-EE----EeCCCCcEEEEecccc-----ccc-----eecCCCCCCCeeEEEeCCC-CCEEEEeC-C
Q 044877           30 GTNFQCFASTGDGS-IV----VGSLDGKIRLYSSNSM-----RQA-----KTAFPGLGSPIRYVDVTYD-GRWILGTT-D   92 (244)
Q Consensus        30 ~~~Ft~vats~~G~-Ia----vGS~dG~IRLyD~~~~-----r~a-----Kt~lpglGdPI~~vdvS~D-G~~lLaT~-~   92 (244)
                      ...+++++++++|. ||    +|+.||.||+||..+.     +..     ...+.+|+++|.+|+++|+ +.+|++.+ +
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            44699999999998 77    7999999999998654     111     2356788999999999998 77776555 6


Q ss_pred             cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEE
Q 044877           93 TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIW  172 (244)
Q Consensus        93 ~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvW  172 (244)
                      .+|+|||..-    +                 ..+.      ...++....+...|+  +   .+..+++++.+..+.+|
T Consensus       172 g~v~iwD~~~----~-----------------~~~~------~~~~~~~~v~~v~ws--p---dg~~lasgs~dg~v~iw  219 (434)
T 2oit_A          172 GSIAVLQVTE----T-----------------VKVC------ATLPSTVAVTSVCWS--P---KGKQLAVGKQNGTVVQY  219 (434)
T ss_dssp             SCEEEEEESS----S-----------------EEEE------EEECGGGCEEEEEEC--T---TSSCEEEEETTSCEEEE
T ss_pred             CeEEEEEcCC----C-----------------ccee------eccCCCCceeEEEEc--C---CCCEEEEEcCCCcEEEE
Confidence            8899999741    0                 1111      112233344555665  3   26789999999999999


Q ss_pred             ech
Q 044877          173 NFQ  175 (244)
Q Consensus       173 n~~  175 (244)
                      |.+
T Consensus       220 d~~  222 (434)
T 2oit_A          220 LPT  222 (434)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.92  E-value=8.7e-09  Score=103.76  Aligned_cols=116  Identities=9%  Similarity=0.193  Sum_probs=84.7

Q ss_pred             cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      ..|.-....+|+|++|+|. ||+|+.||.|||||..+.+... .++ +..+|.+|+++| |++|++.+ +++|+|||..-
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~-~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI-KLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE-ECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE-EcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            3444566799999999998 9999999999999987654333 344 688999999999 89887766 58899999631


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                          +                 +.+.      .+. +.-..+...|+  +   .++.+++++.+..|.+||++.
T Consensus        89 ----~-----------------~~~~------~~~-~~~~V~~v~~s--p---~g~~l~sgs~dg~V~lwd~~~  129 (902)
T 2oaj_A           89 ----Q-----------------KVLT------TVF-VPGKITSIDTD--A---SLDWMLIGLQNGSMIVYDIDR  129 (902)
T ss_dssp             ----C-----------------SEEE------EEE-CSSCEEEEECC--T---TCSEEEEEETTSCEEEEETTT
T ss_pred             ----C-----------------cEEE------EEc-CCCCEEEEEEC--C---CCCEEEEEcCCCcEEEEECCC
Confidence                0                 1111      011 11233455676  2   268899999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.92  E-value=4.1e-08  Score=86.94  Aligned_cols=113  Identities=12%  Similarity=0.183  Sum_probs=85.2

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG  107 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~  107 (244)
                      ...+++++++++|. ||+|+.||.|++||..+++..+ .+.++..+|.++++  ++++|++.+ +..|++||....    
T Consensus       134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~----  206 (401)
T 4aez_A          134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA----  206 (401)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS----
T ss_pred             CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE-EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC----
Confidence            56689999999997 9999999999999998776555 46789999999999  677888776 577999997421    


Q ss_pred             CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      ...+.      .+.++....+...|+  +   .+..+++++.+..+.+||++.
T Consensus       207 ----------------~~~~~------~~~~~~~~v~~~~~~--~---~~~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          207 ----------------NHQIG------TLQGHSSEVCGLAWR--S---DGLQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             ----------------SCEEE------EEECCSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTC
T ss_pred             ----------------cceee------EEcCCCCCeeEEEEc--C---CCCEEEEEeCCCeEEEccCCC
Confidence                            01111      233344444555666  3   257888899999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.90  E-value=8.5e-09  Score=86.81  Aligned_cols=70  Identities=14%  Similarity=0.176  Sum_probs=60.5

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEe--CCCCCEEEEeC-CcceEEEEee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDV--TYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdv--S~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ...+++++++++|. ||+|+.||.|++||..+.+...  +.++..+|.++++  ++||++|++.+ +..|++||..
T Consensus        86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  159 (368)
T 3mmy_A           86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR  159 (368)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred             cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence            55689999999997 9999999999999998765443  4579999999999  99999998776 5789999974

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.90  E-value=9.1e-09  Score=92.65  Aligned_cols=119  Identities=11%  Similarity=0.123  Sum_probs=82.0

Q ss_pred             CCceeEEEecC-CCc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEeeec
Q 044877           30 GTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICTLFT  103 (244)
Q Consensus        30 ~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt~~~  103 (244)
                      ...+.++++++ ++. +|+|+.||.|++||.+...  .....+.++..+|.+|+++|+|+++|++ + +..|++||..-.
T Consensus       231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence            34589999999 555 8999999999999997652  1222356789999999999999975544 3 578999997420


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                                .        .  .+.      .+.++....+...|+  +  +....+++++.+..+.+||+....
T Consensus       311 ----------~--------~--~~~------~~~~h~~~v~~i~~s--p--~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          311 ----------K--------L--KLH------SFESHKDEIFQVQWS--P--HNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             ----------T--------S--CSE------EEECCSSCEEEEEEC--S--SCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             ----------C--------C--CeE------EeecCCCCEEEEEEC--C--CCCCEEEEEeCCCcEEEEeCCCCc
Confidence                      0        0  111      122333334455666  3  113457777889999999998853

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.89  E-value=1.9e-08  Score=89.02  Aligned_cols=116  Identities=13%  Similarity=0.134  Sum_probs=82.5

Q ss_pred             CCCceeEEEecCCCc--EEEeC--CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC---CcceEEEEee
Q 044877           29 RGTNFQCFASTGDGS--IVVGS--LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT---DTYLILICTL  101 (244)
Q Consensus        29 ~~~~Ft~vats~~G~--IavGS--~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~---~~~L~L~dt~  101 (244)
                      ....+++++++++|.  +++|+  .||.|++||..+++..++ ++ ++.+|.+++++|||++|++++   ++.|++||..
T Consensus       258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-Ee-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence            345689999999775  66654  899999999987765553 33 788999999999999999864   5889999964


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      -    +               ....+.      .+.++....+...|+  +   .+..+++++.+..+.+|++..
T Consensus       336 ~----~---------------~~~~~~------~~~~h~~~v~~~~~s--~---dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          336 S----S---------------GLTKQV------DIPAHDTRVLYSALS--P---DGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             T----T---------------EEEEEE------EEECCSSCCCEEEEC--T---TSSEEEEECTTSEEEEEECCC
T ss_pred             C----c---------------cceeEE------EecCCCCCEEEEEEC--C---CCCEEEEEeCCCcEEEEECCC
Confidence            1    0               011111      122333333444555  2   257888899999999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.89  E-value=3.5e-08  Score=88.13  Aligned_cols=115  Identities=12%  Similarity=0.079  Sum_probs=85.7

Q ss_pred             CCCceeEEEecCCCc--EE--EeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC---CcceEEEEee
Q 044877           29 RGTNFQCFASTGDGS--IV--VGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT---DTYLILICTL  101 (244)
Q Consensus        29 ~~~~Ft~vats~~G~--Ia--vGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~---~~~L~L~dt~  101 (244)
                      ....+.++++++.+.  ++  .||.||.||+||..+++...+ +. .+.+|.++.++++++.+++++   ++.|+|||..
T Consensus       275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~-~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~  352 (420)
T 4gga_A          275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  352 (420)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-EE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-ec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence            344588999999654  44  468999999999988765553 33 677999999999999999764   5789999962


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                           ..+++.      .+.||.-.-+...|+  +   .++.++++|.+..|.+||+.+.
T Consensus       353 ---------------------~~~~v~------~l~gH~~~V~~l~~s--p---dg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          353 ---------------------TMAKVA------ELKGHTSRVLSLTMS--P---DGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             ---------------------TCCEEE------EECCCSSCEEEEEEC--T---TSSCEEEEETTTEEEEECCSCS
T ss_pred             ---------------------CCcEEE------EEcCCCCCEEEEEEc--C---CCCEEEEEecCCeEEEEECCCC
Confidence                                 223343      455665555566776  2   2578999999999999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.88  E-value=2e-08  Score=100.79  Aligned_cols=116  Identities=16%  Similarity=0.240  Sum_probs=87.7

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC--CCEEEEeC-CcceEEEEeeecc
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD--GRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D--G~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      ....++|++++++|. ||+|+.||.|++||..+++... .++++..+|.+++++|+  +.++++.+ +..|++||..-  
T Consensus       656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--  732 (1249)
T 3sfz_A          656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH-TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--  732 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS--
T ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE-EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC--
Confidence            345689999999997 9999999999999998876555 57889999999999995  44666555 57799999631  


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                                         ...+.      .+.++.-..+...|+  +   .++.+++++.+..+.+||++.-
T Consensus       733 -------------------~~~~~------~~~~h~~~v~~~~~s--p---~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          733 -------------------KECRN------TMFGHTNSVNHCRFS--P---DDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             -------------------SSEEE------EECCCSSCEEEEEEC--S---STTEEEEEESSSEEEEEEGGGT
T ss_pred             -------------------cchhh------eecCCCCCEEEEEEe--c---CCCEEEEEECCCeEEEEeCCCC
Confidence                               11222      233454455566776  2   2578999999999999999753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.87  E-value=2.8e-08  Score=83.77  Aligned_cols=132  Identities=12%  Similarity=0.122  Sum_probs=85.7

Q ss_pred             cCCCCceeEEEecCCCcEEEeCCCCcEEEEeccc-ccc-ceecCCCCCCCeeEEEeCC-CCCEEEEeCC-cceEEEEeee
Q 044877           27 FSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS-MRQ-AKTAFPGLGSPIRYVDVTY-DGRWILGTTD-TYLILICTLF  102 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~-~r~-aKt~lpglGdPI~~vdvS~-DG~~lLaT~~-~~L~L~dt~~  102 (244)
                      +......+++++++++ +++|+.||.|++||..+ ... .+.....+..+|.+|+++| ||+++++.+. ..|+|||...
T Consensus       147 ~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~  225 (342)
T 1yfq_A          147 TKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             SSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             EeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence            4455678999999998 99999999999999976 432 2223456888999999999 9999998775 7799999643


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .   +..   ..      ......++.+.....-.++....+...|+  +   .+..+++++.+..+.+||++.
T Consensus       226 ~---~~~---~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~---~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          226 Q---GDD---YN------SSKRFAFRCHRLNLKDTNLAYPVNSIEFS--P---RHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             T---CCS---TT------CTTCEEEECCCCCTTCCSSCCCEEEEEEC--T---TTCCEEEEETTSCEEEEETTT
T ss_pred             C---Ccc---cc------cccceeeecccccccccccceeEEEEEEc--C---CCCEEEEecCCceEEEEcCcc
Confidence            1   000   00      00112222111100001112233444665  2   256788888899999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.87  E-value=5e-09  Score=87.25  Aligned_cols=73  Identities=12%  Similarity=0.170  Sum_probs=60.1

Q ss_pred             CCCCceeEEEecCCCc-EEE--eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           28 SRGTNFQCFASTGDGS-IVV--GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-Iav--GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ....+..++++++++. +++  |+.||.|++||..+++..+ .|.+|.++|++|++||||++|++.+ +.+|+|||..
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~-~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA-ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE-EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            3445678888888776 544  5689999999998887666 4789999999999999999998776 5889999963

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.86  E-value=2.4e-08  Score=98.57  Aligned_cols=68  Identities=18%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEecccccc-------ceec---CCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ-------AKTA---FPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~-------aKt~---lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .+.|+|+||+|. ||+|+.||.||+||..+++.       .+++   ..|+.+.|.+|++|||| .+++..+++++|||.
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~  209 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTV  209 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEEC
Confidence            488999999998 99999999999999976531       2322   37788999999999999 444555799999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.86  E-value=4.4e-09  Score=100.33  Aligned_cols=113  Identities=12%  Similarity=0.045  Sum_probs=80.8

Q ss_pred             CCceeEE--EecCCC-c-EEEeCCCCcEEEEeccccccceecCCCCC--CCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877           30 GTNFQCF--ASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTAFPGLG--SPIRYVDVTYDGRWILGTT-DTYLILICTLF  102 (244)
Q Consensus        30 ~~~Ft~v--ats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~lpglG--dPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~  102 (244)
                      ...+++|  +.+++| + ||+||.||.|||||.++.+..+++ .++.  ..|.+|+++|||+.+++++ +.+|+|||..-
T Consensus       308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~-~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT-VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE-EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred             cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc-ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence            3458888  567888 6 899999999999999877655543 3332  3589999999999988877 47799999631


Q ss_pred             ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                               |+.            +.      .+.||.-.-+.-.|+  +   .+..++++|.+..|.+||+.
T Consensus       387 ---------~~~------------~~------~l~gH~~~V~sva~S--p---~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          387 ---------AFA------------VH------PLVSRETTITAIGVS--R---LHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             ---------TTC------------CE------EEEECSSCEEEEECC--S---SCCBCEEEETTTEEECCBSC
T ss_pred             ---------ccc------------ce------eeecCCCceEEEEeC--C---CCCeEEEEECCCEEEEEech
Confidence                     111            11      233444333444666  3   25788999999999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.82  E-value=3.8e-08  Score=88.06  Aligned_cols=107  Identities=17%  Similarity=0.329  Sum_probs=78.0

Q ss_pred             CceeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~  108 (244)
                      ..++|++.  +| .||+|+.||.|++||..+++..+ .++++..+|+++++  ||++|++.+ +.+|++||..-    + 
T Consensus       134 ~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~----~-  203 (435)
T 1p22_A          134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT----G-  203 (435)
T ss_dssp             CCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE-EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS----C-
T ss_pred             CcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE-EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC----C-
Confidence            34677776  44 49999999999999998876555 57899999999988  899998776 57899999731    1 


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      +.+.      .+.++........|+       ...+++++.+..+.+||++.
T Consensus       204 ----------------~~~~------~~~~h~~~v~~l~~~-------~~~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          204 ----------------EMLN------TLIHHCEAVLHLRFN-------NGMMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             ----------------CEEE------EECCCCSCEEEEECC-------TTEEEEEETTSCEEEEECSS
T ss_pred             ----------------cEEE------EEcCCCCcEEEEEEc-------CCEEEEeeCCCcEEEEeCCC
Confidence                            1222      222333333344554       35899999999999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.78  E-value=4.2e-08  Score=95.86  Aligned_cols=121  Identities=12%  Similarity=0.190  Sum_probs=83.9

Q ss_pred             CCceeEEEecCC--Cc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCCC--CCEEEEeC-CcceEEEEee
Q 044877           30 GTNFQCFASTGD--GS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYD--GRWILGTT-DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~--G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~D--G~~lLaT~-~~~L~L~dt~  101 (244)
                      ...++|++++++  |. |++|+.||.|++||..+++  ... .+.++..+|++++++|+  |+++++.+ +..|++||..
T Consensus        53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA-VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE-EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc-cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            456999999987  76 9999999999999997664  333 46789999999999999  99998777 4789999974


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeee--------cCCCCcceEEEEeeCCeEEEEe
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWV--------TENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~--------tg~~~~E~~IvtStG~fvvvWn  173 (244)
                      -..  .              ..+..+         .++....+...|+..        .....+..+++++.+..+.+||
T Consensus       132 ~~~--~--------------~~~~~~---------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd  186 (753)
T 3jro_A          132 ENG--T--------------TSPIII---------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK  186 (753)
T ss_dssp             SSS--C--------------CCCEEE---------ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEE
T ss_pred             cCC--C--------------cceeEe---------ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEe
Confidence            210  0              111111         122222223333310        0011367899999999999999


Q ss_pred             chh
Q 044877          174 FQQ  176 (244)
Q Consensus       174 ~~k  176 (244)
                      ++.
T Consensus       187 ~~~  189 (753)
T 3jro_A          187 YNS  189 (753)
T ss_dssp             EET
T ss_pred             ccC
Confidence            875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.77  E-value=4.9e-08  Score=87.37  Aligned_cols=119  Identities=18%  Similarity=0.275  Sum_probs=77.8

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT  109 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~  109 (244)
                      ...+|++.++. .|++|+.||.||+||..+++... .+.++..+|.+|++  ||++|++.+ +..|++||..-....   
T Consensus       297 ~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~---  369 (435)
T 1p22_A          297 RGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLR-VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDP---  369 (435)
T ss_dssp             SCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTST---
T ss_pred             CcEEEEEeCCC-EEEEEeCCCeEEEEECCCCCEEE-EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCc---
Confidence            45778888543 69999999999999998776555 46789999999998  889988777 577999997421100   


Q ss_pred             ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                               ...+....++      .+.++....+...|+       +..+++++.+..+.+||+..-.
T Consensus       370 ---------~~~~~~~~~~------~~~~h~~~v~~l~~~-------~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          370 ---------RAPAGTLCLR------TLVEHSGRVFRLQFD-------EFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             ---------TSCTTTTEEE------EECCCSSCCCCEEEC-------SSCEEECCSSSEEEEEC-----
T ss_pred             ---------cccccchhee------eccCCCCCeEEEEeC-------CCEEEEEeCCCEEEEEECCCCC
Confidence                     0001111222      233443333344453       3678888899999999997643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.76  E-value=1.3e-07  Score=84.43  Aligned_cols=65  Identities=18%  Similarity=0.305  Sum_probs=52.5

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .+|++.+++ .||+|+.||.||+||..+++..+ .++++..+|.+++++  +.+|++.+ +.+|++||..
T Consensus       122 ~~~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          122 ITCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             EEEEEEETT-EEEEEETTSCEEEEETTTCCEEE-ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             EEEEEEcCC-EEEEEECCCcEEEEECCCCcEEE-EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            577776532 59999999999999998877555 578999999999997  56777665 5889999963

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.73  E-value=6.1e-08  Score=90.54  Aligned_cols=114  Identities=9%  Similarity=0.006  Sum_probs=74.7

Q ss_pred             eeEEEecC---CCc-EEEeCCCCcEEEEeccccccceecCCCCC---CCeeEEEeCCCCCEEEE-----------e--CC
Q 044877           33 FQCFASTG---DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLG---SPIRYVDVTYDGRWILG-----------T--TD   92 (244)
Q Consensus        33 Ft~vats~---~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglG---dPI~~vdvS~DG~~lLa-----------T--~~   92 (244)
                      .+++++++   +|. ||+||.||.||+||..++++.+|+ .+++   ..+.++++||||+++++           +  .+
T Consensus       181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL-~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D  259 (356)
T 2w18_A          181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM-HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV  259 (356)
T ss_dssp             SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE-ECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred             eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE-cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence            45566666   445 889999999999999988877764 4433   36778899999998853           2  25


Q ss_pred             cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEE
Q 044877           93 TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIW  172 (244)
Q Consensus        93 ~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvW  172 (244)
                      .+|+|||..-    +                 +.++...-. .-.|+...|....|+       +..++++|.++.|.+|
T Consensus       260 ~tIklWd~~t----g-----------------k~l~v~~~~-~p~Gh~~~~lsg~~s-------g~~lASgS~DgTIkIW  310 (356)
T 2w18_A          260 FQLIVINPKT----T-----------------LSVGVMLYC-LPPGQAGRFLEGDVK-------DHCAAAILTSGTIAIW  310 (356)
T ss_dssp             EEEEEEETTT----T-----------------EEEEEEEEC-CCTTCCCCEEEEEEE-------TTEEEEEETTSCEEEE
T ss_pred             cEEEEEECCC----C-----------------EEEEEEEee-ccCCCcceeEccccC-------CCEEEEEcCCCcEEEE
Confidence            7799998521    1                 111100000 012444445555554       4677888899999999


Q ss_pred             echh
Q 044877          173 NFQQ  176 (244)
Q Consensus       173 n~~k  176 (244)
                      |++.
T Consensus       311 Dl~t  314 (356)
T 2w18_A          311 DLLL  314 (356)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9853

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.70  E-value=2.2e-07  Score=82.96  Aligned_cols=20  Identities=10%  Similarity=0.295  Sum_probs=17.0

Q ss_pred             cceEEEEeeCCeEEEEechh
Q 044877          157 QERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       157 ~E~~IvtStG~fvvvWn~~k  176 (244)
                      ++.+++++.+..+.+||++.
T Consensus       329 ~~~l~~~~~dg~i~vwd~~~  348 (445)
T 2ovr_B          329 DNILVSGNADSTVKIWDIKT  348 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEEECCC
Confidence            46888899999999999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.68  E-value=1.2e-07  Score=87.34  Aligned_cols=71  Identities=13%  Similarity=0.015  Sum_probs=59.0

Q ss_pred             CCceeEEEecCC-Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           30 GTNFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ...+++++++|+ +. +|+|+.||.||+||..+..... ...+++.+|.+++++|||++|++.+ +..|++||..
T Consensus       149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~-~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC-ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE-EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee-eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            456899999997 66 9999999999999997664333 2345889999999999999999877 5789999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.65  E-value=2.8e-07  Score=79.75  Aligned_cols=69  Identities=23%  Similarity=0.300  Sum_probs=56.1

Q ss_pred             CCceeEEEecCCCc-E-EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-cceEEEEe
Q 044877           30 GTNFQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-TYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~~L~L~dt  100 (244)
                      .....+++++++|. | ++|+.||.|++||..+++..+ .++ ++.+|.+++++|||++|++++ . ..|.+||.
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~-~~~-~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA-TVP-AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE-EEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE-EEE-CCCCccceEECCCCCEEEEEECCCCEEEEEEC
Confidence            34578999999997 5 788899999999998776554 344 455999999999999997665 3 78999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.61  E-value=3.8e-07  Score=80.03  Aligned_cols=68  Identities=4%  Similarity=-0.026  Sum_probs=58.4

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt  100 (244)
                      ...+++++++|. +++|+.||.|++||..+.+... .+++++.++.+++++|||+++++++  +..|.+||.
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~  241 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA-TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR  241 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE-EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE-EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence            578899999998 8999999999999997766555 4677899999999999999997665  478999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.60  E-value=1.1e-07  Score=88.73  Aligned_cols=56  Identities=11%  Similarity=0.101  Sum_probs=47.0

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCee-EEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIR-YVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~-~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      +|+||.||.|||||..++++..| |.++.+++. .+++||||++|++.+ +++|+|||.
T Consensus       298 lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          298 AAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            89999999999999999887775 677777655 699999999999888 588999995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.49  E-value=2.1e-06  Score=74.25  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             CCCceeEEEecCCCc-E-EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC-cceEEEEe
Q 044877           29 RGTNFQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD-TYLILICT  100 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~-~~L~L~dt  100 (244)
                      ......+++++++|. | ++++.+|.|++||..+++... .++ .+..+.+++++|||++|+++ +. ..|.+||.
T Consensus       114 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEe-cCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            344578999999997 6 789999999999997765444 344 46677999999999999644 43 67999996

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.49  E-value=2.9e-06  Score=68.61  Aligned_cols=72  Identities=18%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             CCceeEEEecCCCc-EE-EeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           30 GTNFQCFASTGDGS-IV-VGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~-Ia-vGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      .....+++.+|+|. |+ +++.+|.++||+..........+..+..+|.+++++|||++|+.++  +..+.||+..
T Consensus       128 ~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          128 NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            33477889999998 65 7889999999995321112224566788999999999999998665  4679999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.47  E-value=8.3e-07  Score=77.87  Aligned_cols=72  Identities=6%  Similarity=-0.006  Sum_probs=56.8

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee----cCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT----AFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt----~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      ......++++++++. +++++.+|.|++||..+++..++    .++++..+|.++++++||+.+++.+. ..|++||.
T Consensus       121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            344456899999777 67788899999999987654442    23467789999999999999887775 78999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.46  E-value=9.4e-07  Score=83.83  Aligned_cols=70  Identities=17%  Similarity=0.028  Sum_probs=56.7

Q ss_pred             CCceeEEEecCCCc-EEEeCC-CC-----cEEEEeccccccceecCCCCCC------------------------CeeEE
Q 044877           30 GTNFQCFASTGDGS-IVVGSL-DG-----KIRLYSSNSMRQAKTAFPGLGS------------------------PIRYV   78 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~-dG-----~IRLyD~~~~r~aKt~lpglGd------------------------PI~~v   78 (244)
                      ....++++.+|+|. ||+++. ||     .|++||..+++..+ ++...+.                        .|.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-EECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-ccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            44578999999998 999998 88     89999998765333 3333332                        38999


Q ss_pred             EeCCCCCEEEEeCCcceEEEEe
Q 044877           79 DVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        79 dvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      ++||||++|+.++...|.+||.
T Consensus       115 ~~SpDg~~l~~~~~~~i~~~d~  136 (741)
T 2ecf_A          115 QWSPDAQRLLFPLGGELYLYDL  136 (741)
T ss_dssp             EECTTSSEEEEEETTEEEEEES
T ss_pred             EECCCCCEEEEEeCCcEEEEEC
Confidence            9999999999888888999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.45  E-value=3e-06  Score=76.83  Aligned_cols=69  Identities=10%  Similarity=0.041  Sum_probs=55.4

Q ss_pred             CCceeEEEecCCCc-EEEeCCCC---cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC---cceEEEEe
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDG---KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD---TYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG---~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~---~~L~L~dt  100 (244)
                      .....+++++|+|. ||.++.++   .|++||..+++. + .+.++...+.++++||||++|+.+ +.   ..|.+||.
T Consensus       178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~  254 (415)
T 2hqs_A          178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-R-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  254 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-E-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence            34588999999998 99999886   999999987753 3 355677899999999999999844 42   33888985

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.38  E-value=2.3e-06  Score=72.29  Aligned_cols=69  Identities=17%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             CCceeEEEecCCCc-E-EEeCCCCcEEEEecccccc---ceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877           30 GTNFQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQ---AKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~---aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt  100 (244)
                      ...-.+++++|+|. + +++..+|.|++||..+++.   .. .++ .+..+.+++++|||++|++++.  +.|.+||.
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~-~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN-AVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE-EEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee-ecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            34457899999997 5 5556799999999977664   44 345 4677899999999999887763  66999996

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.36  E-value=8e-07  Score=83.88  Aligned_cols=67  Identities=13%  Similarity=0.138  Sum_probs=53.8

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCC---CeeEEEeCCCCCEEEEeCC----------cceEEEE
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGS---PIRYVDVTYDGRWILGTTD----------TYLILIC   99 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGd---PI~~vdvS~DG~~lLaT~~----------~~L~L~d   99 (244)
                      ..+++.+|+|.++..+.||.|++||..+++... ++.++..   .|.++++||||++|+.++.          ..|.|||
T Consensus        19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEE-EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            568899999996566899999999998876443 5565544   4999999999999997764          5688999


Q ss_pred             e
Q 044877          100 T  100 (244)
Q Consensus       100 t  100 (244)
                      .
T Consensus        98 ~   98 (723)
T 1xfd_A           98 I   98 (723)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.34  E-value=9.1e-06  Score=73.63  Aligned_cols=68  Identities=16%  Similarity=0.004  Sum_probs=53.9

Q ss_pred             CceeEEEecCCCc-EE-EeCCCCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--c--ceEEEEe
Q 044877           31 TNFQCFASTGDGS-IV-VGSLDGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--T--YLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~-Ia-vGS~dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~--~L~L~dt  100 (244)
                      ....+++++|+|. || +++.+|.  |++||..+++ .+ .+.++...+.++++||||++|+.++.  .  .|.+||.
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-EE-eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence            3578999999998 77 7888776  9999997764 33 46668889999999999999998874  2  4666674

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.24  E-value=1e-05  Score=67.61  Aligned_cols=72  Identities=10%  Similarity=0.046  Sum_probs=53.7

Q ss_pred             CCCceeEEEecCCCc-EEEeCCC-CcEEEEecc--cccc-ceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLD-GKIRLYSSN--SMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~d-G~IRLyD~~--~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      ......+++++++|. |++++.+ |.|++||..  +++. ....++..+ .+.+++++|||++|++++  ...|.+||..
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            344567899999998 8888876 999999985  3321 112344333 889999999999998776  4669999973

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.23  E-value=2.2e-05  Score=66.31  Aligned_cols=67  Identities=13%  Similarity=0.173  Sum_probs=55.4

Q ss_pred             eeEEEecCCCc-EEEeC--CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGS--LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS--~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      ..+++++++|. +++++  .+|.|.+||..+.+..+ .++..+..+.+++++|||++|++++. +.|.+||.
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~  213 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT-AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDT  213 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE-EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE-EecCCCCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence            57899999987 66665  58999999998776554 46767888999999999999998875 67999996

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.18  E-value=7.5e-06  Score=82.44  Aligned_cols=69  Identities=12%  Similarity=0.021  Sum_probs=58.8

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-----------cceEEE
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-----------TYLILI   98 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-----------~~L~L~   98 (244)
                      ..+.+++++|+|. ||+++.++.|++||..+++ .+..++++..+|.++++||||++|++++.           ..|.+|
T Consensus       379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             cceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence            4578999999998 9999999999999998775 44456678889999999999999987753           379999


Q ss_pred             Ee
Q 044877           99 CT  100 (244)
Q Consensus        99 dt  100 (244)
                      |.
T Consensus       458 d~  459 (1045)
T 1k32_A          458 DM  459 (1045)
T ss_dssp             ET
T ss_pred             EC
Confidence            96

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.17  E-value=1.5e-05  Score=75.63  Aligned_cols=66  Identities=11%  Similarity=0.078  Sum_probs=56.1

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      +.++++||+|. ||+++. |.|++||..+++  ..+ .+..++.++.++.+||||++|+..+...|.+||.
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~  179 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDL  179 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEET
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEEEEEeCCcEEEEec
Confidence            68999999998 888776 999999997762  233 3566788999999999999999888888999996

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.15  E-value=4.4e-05  Score=61.59  Aligned_cols=70  Identities=13%  Similarity=0.058  Sum_probs=53.8

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccc-cccceecCCCC-CCCeeEEEeCCCCCEEEEeCC---cceEEEEee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS-MRQAKTAFPGL-GSPIRYVDVTYDGRWILGTTD---TYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~-~r~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~---~~L~L~dt~  101 (244)
                      ...+.+++++|+|. ||+++ +|.|++||..+ ++ .+..+.+. ...|.++++||||++|++++.   ....||...
T Consensus        41 ~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~  116 (297)
T 2ojh_A           41 PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP  116 (297)
T ss_dssp             SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred             CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence            45688999999998 77765 89999999977 64 34345555 478999999999999998872   246666653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.15  E-value=2e-05  Score=66.44  Aligned_cols=66  Identities=21%  Similarity=0.076  Sum_probs=51.6

Q ss_pred             EEEecCCCc-EEEeCC-CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc----ceEEEEe
Q 044877           35 CFASTGDGS-IVVGSL-DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT----YLILICT  100 (244)
Q Consensus        35 ~vats~~G~-IavGS~-dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~----~L~L~dt  100 (244)
                      +++++++|. +++++. ++.|++||..+++.....++....|+.+++++|||++|+++...    .|.+||.
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence            999999997 665555 99999999987764133455556666669999999999966655    8999996

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.11  E-value=0.00014  Score=61.05  Aligned_cols=65  Identities=11%  Similarity=-0.067  Sum_probs=49.3

Q ss_pred             eEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCC--CeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877           34 QCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGS--PIRYVDVTYDGRWILGTT--DTYLILICT  100 (244)
Q Consensus        34 t~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGd--PI~~vdvS~DG~~lLaT~--~~~L~L~dt  100 (244)
                      +.+++++++. +++++.+|.|++||..+++..+ .++ ++.  .+.+++++|||+++++++  ...|.+||.
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~-~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~   72 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYK-SCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL   72 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEE-EEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ccccccCCCEEEEEeCCCCeEEEEECCCCcEEE-EEe-cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence            3567778877 7889999999999997765444 334 334  678999999999876554  467999996

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.10  E-value=3.3e-05  Score=64.51  Aligned_cols=72  Identities=8%  Similarity=0.007  Sum_probs=53.9

Q ss_pred             CCceeEEEecCCCc-EEEeC-CCCcEEEEeccc-cccce----ecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877           30 GTNFQCFASTGDGS-IVVGS-LDGKIRLYSSNS-MRQAK----TAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS-~dG~IRLyD~~~-~r~aK----t~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt  100 (244)
                      .....+++++++|. |++++ .+|.|++||... ++...    ......|..+.+++++|||++|++++  .+.|.+||.
T Consensus       128 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~  207 (343)
T 1ri6_A          128 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  207 (343)
T ss_dssp             CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            34467899999997 77777 899999999865 32211    11223567899999999999988765  477999997


Q ss_pred             e
Q 044877          101 L  101 (244)
Q Consensus       101 ~  101 (244)
                      .
T Consensus       208 ~  208 (343)
T 1ri6_A          208 K  208 (343)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.01  E-value=4.2e-05  Score=72.74  Aligned_cols=66  Identities=12%  Similarity=0.231  Sum_probs=56.7

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEec--cccccceecCCCCCCCeeEEEeCC----CCCEEEEeC--CcceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSS--NSMRQAKTAFPGLGSPIRYVDVTY----DGRWILGTT--DTYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~--~~~r~aKt~lpglGdPI~~vdvS~----DG~~lLaT~--~~~L~L~dt  100 (244)
                      ..+++++|+|. +++++.||.|++||.  .+.+..++ ++ .|....+|++||    ||++|++++  +.+|.+||.
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~  255 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG  255 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE-Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence            56899999997 999999999999999  67665553 56 677789999999    999999887  488999996

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.97  E-value=3.2e-05  Score=73.06  Aligned_cols=68  Identities=10%  Similarity=0.004  Sum_probs=54.8

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      ..+++++++|++.++.+ .+|.|++||..+++ .. .+...+.++.++.+||||++|+.+.+..|.+||..
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~-~~-~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~  149 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARK-VT-YLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGG  149 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTE-EE-EEECCTTCCTTCEECTTSSEEEEEETTEEEEEECB
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCc-eE-EccCCcccccCCcCCCCCCEEEEEECCeEEEEecC
Confidence            56899999999666665 45999999997764 33 23446778999999999999988778889999973

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.97  E-value=3.3e-05  Score=72.85  Aligned_cols=67  Identities=7%  Similarity=0.018  Sum_probs=54.0

Q ss_pred             ceeEEEecCCCc-EEEeCCC---------CcEEEEeccccccceecCC---CCCCCeeEEEeCCCCCEEEEeCCcceEEE
Q 044877           32 NFQCFASTGDGS-IVVGSLD---------GKIRLYSSNSMRQAKTAFP---GLGSPIRYVDVTYDGRWILGTTDTYLILI   98 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~d---------G~IRLyD~~~~r~aKt~lp---glGdPI~~vdvS~DG~~lLaT~~~~L~L~   98 (244)
                      ...++++||+|. ||+++.+         +.|++||..+++. + .+.   ++...|.++.+||||++|+..+...|.+|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-Q-SLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-E-ECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-E-eccCCccccccccccEECCCCCEEEEEECCeEEEE
Confidence            378999999998 8888764         7888999977653 3 233   33445999999999999998888889999


Q ss_pred             Ee
Q 044877           99 CT  100 (244)
Q Consensus        99 dt  100 (244)
                      |.
T Consensus       140 ~~  141 (723)
T 1xfd_A          140 AH  141 (723)
T ss_dssp             SS
T ss_pred             EC
Confidence            96

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.96  E-value=2.2e-05  Score=74.46  Aligned_cols=66  Identities=14%  Similarity=0.095  Sum_probs=53.9

Q ss_pred             eeEEEecCCCc-EEEeCC---------CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSL---------DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~---------dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      ..+++.||+|. ||.++.         ++.|++||..+++...  ...+...+.++.+||||++|+.+.++.|.+||.
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~--~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR--GNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--SSCCCSSBCCEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc--ceecCcccccceECCCCCEEEEEECCeEEEEeC
Confidence            67999999998 888876         7999999997765311  012346799999999999999888899999986

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.95  E-value=0.00012  Score=61.59  Aligned_cols=68  Identities=1%  Similarity=-0.098  Sum_probs=50.0

Q ss_pred             ceeEEEecCCCc-E-EEeCCCCcEEEEeccccccceecCCCCC--CC-------eeEEEeCCCCCEEEEeC---CcceEE
Q 044877           32 NFQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTAFPGLG--SP-------IRYVDVTYDGRWILGTT---DTYLIL   97 (244)
Q Consensus        32 ~Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~lpglG--dP-------I~~vdvS~DG~~lLaT~---~~~L~L   97 (244)
                      .-.+++++++|. + ++++.+|.|++||..+++..++ ++..+  .|       +.++.++|||+++++++   +..|.+
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR-LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEE-EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            356889999997 5 4556689999999987664442 33211  11       68999999999988776   456999


Q ss_pred             EEe
Q 044877           98 ICT  100 (244)
Q Consensus        98 ~dt  100 (244)
                      ||.
T Consensus       169 ~d~  171 (353)
T 3vgz_A          169 VDG  171 (353)
T ss_dssp             EET
T ss_pred             EcC
Confidence            996

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.95  E-value=0.0011  Score=57.92  Aligned_cols=71  Identities=11%  Similarity=0.120  Sum_probs=52.3

Q ss_pred             CCceeEEEecCCCc-EEEeC-CCCcEEEEecc-ccccc---eecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877           30 GTNFQCFASTGDGS-IVVGS-LDGKIRLYSSN-SMRQA---KTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS-~dG~IRLyD~~-~~r~a---Kt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt  100 (244)
                      .....+++++|+|. +++++ .++.|++||.. +++..   ...+|..|..+.++++||||++|++++.  +.|.+|+.
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            34577999999997 77665 47899999986 44321   1122334778999999999999987663  67999885

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.94  E-value=2.1e-05  Score=74.61  Aligned_cols=65  Identities=12%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             EEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCC---CeeEEEeCCCCCEEEEeCC----------cceEEEEe
Q 044877           35 CFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGS---PIRYVDVTYDGRWILGTTD----------TYLILICT  100 (244)
Q Consensus        35 ~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGd---PI~~vdvS~DG~~lLaT~~----------~~L~L~dt  100 (244)
                      +++.+++|.++..+.||.|++||..+++ .+.++.+...   .|.++++||||++|+.++.          ..|.+||.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQ-SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCC-EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCc-EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            7888999997777789999999998775 3434554433   4999999999999987764          67999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.91  E-value=5.1e-05  Score=72.12  Aligned_cols=64  Identities=19%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             EEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           35 CFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        35 ~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      +.+++++|. +++++.||.|++||..+++...+ ++ .|..+.++++||||++|++++ +++|.+||.
T Consensus       142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~-i~-~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~  207 (543)
T 1nir_A          142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-ID-TGYAVHISRMSASGRYLLVIGRDARIDMIDL  207 (543)
T ss_dssp             CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEE-EE-CSTTEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             ccccCCCCEEEEEEcCCCeEEEEECCCceEEEE-Ee-cCcccceEEECCCCCEEEEECCCCeEEEEEC
Confidence            445788888 88999999999999988776664 55 355588999999999999887 488999997

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.89  E-value=0.00026  Score=61.04  Aligned_cols=71  Identities=8%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             CceeEEEecCCCc-EEEeC-CCCcEEEEecccccc--c--eecCCCCCCCeeEEEeCCCCCEEEEeCC---cceEEEEee
Q 044877           31 TNFQCFASTGDGS-IVVGS-LDGKIRLYSSNSMRQ--A--KTAFPGLGSPIRYVDVTYDGRWILGTTD---TYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS-~dG~IRLyD~~~~r~--a--Kt~lpglGdPI~~vdvS~DG~~lLaT~~---~~L~L~dt~  101 (244)
                      ..-.+++++|+|. +++++ .+|.|++||..+++.  .  -..++..+....+|.+||||++|++++.   +.|.+|+..
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            3356899999997 76666 699999999864321  1  1134555566789999999999977653   569999964

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.87  E-value=0.00027  Score=58.93  Aligned_cols=67  Identities=9%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             ceeEEEecCCCcEEEe-CCCCcEEEEeccccccceecCCCCC--CCeeEEEeCCCCCEEEEeCC-c-ceEEEEe
Q 044877           32 NFQCFASTGDGSIVVG-SLDGKIRLYSSNSMRQAKTAFPGLG--SPIRYVDVTYDGRWILGTTD-T-YLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~IavG-S~dG~IRLyD~~~~r~aKt~lpglG--dPI~~vdvS~DG~~lLaT~~-~-~L~L~dt  100 (244)
                      ...+++.+++|.|+++ +.++.|++||..+. ...+ +...|  ..+.+|++++||+.++++.. + .|.+||.
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~-~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQ-IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEE-ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEE-EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            3578999999996554 67899999998543 3332 33333  57899999999998888875 4 8999983

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.85  E-value=0.00015  Score=60.28  Aligned_cols=69  Identities=7%  Similarity=-0.100  Sum_probs=51.5

Q ss_pred             ceeEEEecCCCc-E-EEeCCCCcEEEEeccccccceec-CCC---CCCCeeEEEeCCCCCEEEEeC-------------C
Q 044877           32 NFQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTA-FPG---LGSPIRYVDVTYDGRWILGTT-------------D   92 (244)
Q Consensus        32 ~Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~-lpg---lGdPI~~vdvS~DG~~lLaT~-------------~   92 (244)
                      ...+++++++|. + ++++.+|.|++||..+++..++. ++.   .+..+.++.++|||++|++++             +
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            357899999995 4 66777899999998776544322 121   123788999999999998774             4


Q ss_pred             cceEEEEe
Q 044877           93 TYLILICT  100 (244)
Q Consensus        93 ~~L~L~dt  100 (244)
                      ..|.+||.
T Consensus       115 ~~i~v~d~  122 (337)
T 1pby_B          115 TRVALYDA  122 (337)
T ss_dssp             CEEEEEET
T ss_pred             ceEEEEEC
Confidence            77999996

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.84  E-value=4e-05  Score=63.81  Aligned_cols=64  Identities=14%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      ..+++++++|. |+++  +|.|++||..+++..+ .++ .+..+.+++++|||++|++++. +.|.+||.
T Consensus       243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~-~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK-RVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE-EEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc-eec-CCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            45799999997 7777  7999999997765444 344 5677899999999999988774 77999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.81  E-value=0.00073  Score=57.69  Aligned_cols=69  Identities=13%  Similarity=0.078  Sum_probs=50.0

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEecc-ccccc--eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSN-SMRQA--KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~-~~r~a--Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      ..+++++|+|. ++++..++.|++||.. +++..  .......|....+++++|||++|++++  .+.|.+|+..
T Consensus       143 ~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          143 IHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            56899999999 5566678899999986 33211  111122466788999999999888765  3679999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.79  E-value=0.00018  Score=67.86  Aligned_cols=59  Identities=5%  Similarity=-0.088  Sum_probs=43.9

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccc-----cccceecCCCCCCC--------------eeEEEeCCCCCEEEEe
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNS-----MRQAKTAFPGLGSP--------------IRYVDVTYDGRWILGT   90 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~-----~r~aKt~lpglGdP--------------I~~vdvS~DG~~lLaT   90 (244)
                      ..+.+++.+|+|. ||. +.++.|++||..+     ++..+ ........              +.++.+||||++|+.+
T Consensus       121 ~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~-~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~  198 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIA-VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY  198 (706)
T ss_dssp             TCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEE-SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred             ccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEE-eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence            3467899999997 777 5789999999977     54333 33322222              5899999999999977


Q ss_pred             C
Q 044877           91 T   91 (244)
Q Consensus        91 ~   91 (244)
                      +
T Consensus       199 ~  199 (706)
T 2z3z_A          199 R  199 (706)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.77  E-value=0.00065  Score=58.52  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=49.6

Q ss_pred             eeEEEecCCCc-EEE-eCCCCcEEEEecccccc------c------eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceE
Q 044877           33 FQCFASTGDGS-IVV-GSLDGKIRLYSSNSMRQ------A------KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLI   96 (244)
Q Consensus        33 Ft~vats~~G~-Iav-GS~dG~IRLyD~~~~r~------a------Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~   96 (244)
                      ..+++++|+|. |++ +..++.|++||......      .      .......+..+.++++||||++|++++  .+.|.
T Consensus       157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  236 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI  236 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred             ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence            36799999997 655 44589999998743221      0      111223567789999999999998776  47799


Q ss_pred             EEEee
Q 044877           97 LICTL  101 (244)
Q Consensus        97 L~dt~  101 (244)
                      +||..
T Consensus       237 v~~~~  241 (361)
T 3scy_A          237 AFRYA  241 (361)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99974

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.77  E-value=9.1e-05  Score=63.37  Aligned_cols=70  Identities=10%  Similarity=0.125  Sum_probs=53.1

Q ss_pred             CceeEEEecCCCc-E-EEeCCCCcEEEEeccc---cccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-cceEEEEee
Q 044877           31 TNFQCFASTGDGS-I-VVGSLDGKIRLYSSNS---MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-TYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~-I-avGS~dG~IRLyD~~~---~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~~L~L~dt~  101 (244)
                      ....+++++|+|. | +++..++.|++||...   .+... .++..|..+.+|++||||++|++++ . +.|.+|+..
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ-QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE-EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE-EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            4467899999997 6 5566799999999751   12222 4566678889999999999998776 3 679999753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.76  E-value=8.8e-05  Score=68.86  Aligned_cols=65  Identities=12%  Similarity=0.006  Sum_probs=52.3

Q ss_pred             eEEEecCCCc-EEEeCCC----CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c--ceEEEEe
Q 044877           34 QCFASTGDGS-IVVGSLD----GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T--YLILICT  100 (244)
Q Consensus        34 t~vats~~G~-IavGS~d----G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~--~L~L~dt  100 (244)
                      .+++++|+|. ||.++.+    +.|++||..+++ .++ |.+....+.++++||||++|+++.. .  .|.+||.
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~~-l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRV-FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDP  225 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CEE-ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ceE-eecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence            6899999998 8878877    789999987664 443 4567788999999999999985443 4  5889985

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.70  E-value=8.2e-05  Score=62.44  Aligned_cols=65  Identities=14%  Similarity=0.021  Sum_probs=52.2

Q ss_pred             ceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           32 NFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      ...++++++ +|. ++++  +|.|++||..+++..+ .++ ++..+.++++||||++|++++. +.|.+||+
T Consensus       256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~-~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK-AAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE-EEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE-EEc-CCCCccceEECCCCCEEEEecCCCeEEEEec
Confidence            456888999 997 6766  9999999998766444 344 5667889999999999988764 77999996

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.61  E-value=0.0004  Score=69.96  Aligned_cols=66  Identities=12%  Similarity=0.218  Sum_probs=53.9

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEE-EEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIR-LYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IR-LyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      .+.+++++ +|. |+.++.++.|. +||..+.+ .+. +.++...+.++++||||++|+.++. ..|.+||.
T Consensus       339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~  407 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-AEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  407 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-EEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-ceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEEC
Confidence            57788999 987 88888888888 88986653 443 3477789999999999999987764 67999996

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.56  E-value=0.0002  Score=69.30  Aligned_cols=65  Identities=11%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCC-----CeeEEEeCCCCCEEEEeCC----------cceE
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGS-----PIRYVDVTYDGRWILGTTD----------TYLI   96 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGd-----PI~~vdvS~DG~~lLaT~~----------~~L~   96 (244)
                      ..+++.+++|. |+++  ||.|++||..++++ +.++.++..     ...++.+||||++|+..+.          ..|.
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCE-EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCce-EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45899999998 5554  99999999988764 445665543     2345888999999998775          3456


Q ss_pred             EEEe
Q 044877           97 LICT  100 (244)
Q Consensus        97 L~dt  100 (244)
                      |||.
T Consensus        96 ~~d~   99 (740)
T 4a5s_A           96 IYDL   99 (740)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            8886

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.48  E-value=0.00088  Score=64.39  Aligned_cols=59  Identities=14%  Similarity=0.243  Sum_probs=44.6

Q ss_pred             ceeEEEecCCCc-EEEeCCCC-----cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877           32 NFQCFASTGDGS-IVVGSLDG-----KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG-----~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      .+.+++.||+|. ||.++.++     .|++||..+++.....+++.  .+.++++||||++|+.++.
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~--~~~~~~wspDg~~l~~~~~  190 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV--KFSCMAWTHDGKGMFYNAY  190 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE--CSCCEEECTTSSEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc--ccceEEEEeCCCEEEEEEE
Confidence            478999999998 77666544     89999998776444333332  3778999999999987763

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.48  E-value=0.00032  Score=62.55  Aligned_cols=63  Identities=8%  Similarity=0.071  Sum_probs=50.0

Q ss_pred             EEecCCCc-EEEeCC-----------CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           36 FASTGDGS-IVVGSL-----------DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        36 vats~~G~-IavGS~-----------dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      ++++++|. +++...           .+.|.+||..+.+..++ +|. |. ..+|.+||||++|.+++.+.|.+||+.
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-i~~-~~-p~~ia~spdg~~l~v~n~~~v~v~D~~  333 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-IPG-RD-ALSMTIDQQRNLMLTLDGGNVNVYDIS  333 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-EEC-TT-CCEEEEETTTTEEEEECSSCEEEEECS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-Eec-CC-eeEEEECCCCCEEEEeCCCeEEEEECC
Confidence            68888865 666533           35899999988876664 664 44 999999999999998888889999963

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.42  E-value=0.00017  Score=62.16  Aligned_cols=68  Identities=24%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             eeEEEecCCCc-EEEeCC-CCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGSL-DGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~-dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      |+..+.+|+|. ||.++. +|.  |.+||..+++ .+.+.++.+.++.++.+||||++|+.... ..|.+||..
T Consensus        38 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~  110 (388)
T 3pe7_A           38 FYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA  110 (388)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETT
T ss_pred             hcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECC
Confidence            34478899998 888887 774  8888987765 44466778888878899999999987775 569999853

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.31  E-value=0.0017  Score=62.38  Aligned_cols=59  Identities=12%  Similarity=0.031  Sum_probs=43.7

Q ss_pred             ceeEEEecCCCc-EE-----EeCCCCcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877           32 NFQCFASTGDGS-IV-----VGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        32 ~Ft~vats~~G~-Ia-----vGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      .+.++++||+|. ||     .|+.+..|++||..+++.. .+.+++.  ...++++||||++|+.++.
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~  187 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWL  187 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecCCCEEEEEEe
Confidence            578999999998 77     5667789999999876533 2223322  1268999999999997764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.24  E-value=0.0015  Score=61.14  Aligned_cols=69  Identities=9%  Similarity=-0.068  Sum_probs=53.1

Q ss_pred             CceeEEEecCCCc-EEEeCCC----------CcEEEEeccc------cccceecCCCCCCCeeEEEeCCCCCEEEEeC-C
Q 044877           31 TNFQCFASTGDGS-IVVGSLD----------GKIRLYSSNS------MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D   92 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~d----------G~IRLyD~~~------~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~   92 (244)
                      ..+.+++.+|+|. ||.++.+          ..|++||..+      ++ .+.+.....+.+.++++||||++|+.++ +
T Consensus       130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~  208 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWD  208 (662)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred             ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECC
Confidence            3578999999998 8888887          6899999976      43 4433314557889999999999998665 2


Q ss_pred             --------cceEEEEe
Q 044877           93 --------TYLILICT  100 (244)
Q Consensus        93 --------~~L~L~dt  100 (244)
                              +.|.+||.
T Consensus       209 ~~~~~~~~~~i~~~d~  224 (662)
T 3azo_A          209 HPRMPWEGTELKTARV  224 (662)
T ss_dssp             TTCCTTTCEEEEEEEE
T ss_pred             CCCCCCCCcEEEEEEE
Confidence                    35888886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.22  E-value=0.0004  Score=67.22  Aligned_cols=66  Identities=11%  Similarity=0.095  Sum_probs=54.6

Q ss_pred             eeEEEecCCCc-EEEeCCC---------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSLD---------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~d---------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      |..++.||+|. ||.++.+         |+|.+||..+++ .+ .|.++...+..+.+||||++|+.+.++.|.+||.
T Consensus        64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~-~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~  139 (740)
T 4a5s_A           64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIE  139 (740)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-EC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESS
T ss_pred             ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc-EE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEEC
Confidence            45588999998 8888886         677799998775 44 3555677899999999999998888888999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.20  E-value=0.0014  Score=54.57  Aligned_cols=69  Identities=12%  Similarity=0.182  Sum_probs=48.2

Q ss_pred             ceeEEEecCCCcEEEeC-CCC-cEEEEeccccccceecCCCC-CCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           32 NFQCFASTGDGSIVVGS-LDG-KIRLYSSNSMRQAKTAFPGL-GSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        32 ~Ft~vats~~G~IavGS-~dG-~IRLyD~~~~r~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      .-.+++++++|.|++++ .++ .|++||..+ +...+...+. ...+.+|+++|||+.+++..++.|++|+..
T Consensus       208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          208 YPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             CCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence            45789999999965554 454 999999743 3333221122 234789999999997777556789999863

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.15  E-value=0.00039  Score=61.93  Aligned_cols=66  Identities=14%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             EEEecCCCc-EEEeC----------CCCcEEEEeccccccceecCCC------CCCCeeEEEeCCCCCEEEEeC---Ccc
Q 044877           35 CFASTGDGS-IVVGS----------LDGKIRLYSSNSMRQAKTAFPG------LGSPIRYVDVTYDGRWILGTT---DTY   94 (244)
Q Consensus        35 ~vats~~G~-IavGS----------~dG~IRLyD~~~~r~aKt~lpg------lGdPI~~vdvS~DG~~lLaT~---~~~   94 (244)
                      .++++++|. +++++          .++.|.+||..+.+..++ ++-      .|....+|.+||||+||+++.   .+.
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~-i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~  132 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE-ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS  132 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE-EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE-EEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence            899999997 88876          367799999876654443 331      356778999999999999775   367


Q ss_pred             eEEEEee
Q 044877           95 LILICTL  101 (244)
Q Consensus        95 L~L~dt~  101 (244)
                      |.+||+.
T Consensus       133 v~v~d~~  139 (361)
T 2oiz_A          133 IGIVDVA  139 (361)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999974

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.12  E-value=0.00047  Score=63.98  Aligned_cols=68  Identities=6%  Similarity=-0.052  Sum_probs=54.4

Q ss_pred             CceeEEEecCCCc-EEEeCCCC--cEEEEeccccccceecCCCCCCCeeEEE--------eCCCCCEEEEeC-CcceEEE
Q 044877           31 TNFQCFASTGDGS-IVVGSLDG--KIRLYSSNSMRQAKTAFPGLGSPIRYVD--------VTYDGRWILGTT-DTYLILI   98 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG--~IRLyD~~~~r~aKt~lpglGdPI~~vd--------vS~DG~~lLaT~-~~~L~L~   98 (244)
                      ....++++||+|. ||+++.+|  .|++||..+++ .+ .+.++...|.+++        +||||+.+++++ +..++||
T Consensus       195 ~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~  272 (582)
T 3o4h_A          195 GSFSSASISPGMKVTAGLETAREARLVTVDPRDGS-VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF  272 (582)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC-EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred             CccccceECCCCCEEEEccCCCeeEEEEEcCCCCc-EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEE
Confidence            3468999999998 88888899  89999997765 34 6777777888888        999995555555 4779999


Q ss_pred             Ee
Q 044877           99 CT  100 (244)
Q Consensus        99 dt  100 (244)
                      +.
T Consensus       273 ~~  274 (582)
T 3o4h_A          273 ID  274 (582)
T ss_dssp             ET
T ss_pred             EE
Confidence            85

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.06  E-value=0.0021  Score=54.45  Aligned_cols=68  Identities=12%  Similarity=0.193  Sum_probs=53.3

Q ss_pred             ceeEEEecCCCcEE-EeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc-----ceEEEEe
Q 044877           32 NFQCFASTGDGSIV-VGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT-----YLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~Ia-vGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~-----~L~L~dt  100 (244)
                      ...+++.+++|.|+ +++.+|.|++||..+++ .+..+...+..|.+|++++||+.++++...     .|.+||.
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            35789999999965 68889999999987654 333333456789999999999988887654     7888884

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.03  E-value=0.006  Score=52.61  Aligned_cols=61  Identities=18%  Similarity=0.107  Sum_probs=46.7

Q ss_pred             ecCCCcEEEeCCCCcEEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           38 STGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        38 ts~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      ++|+.-|++||.++.|.+||..+++..-+ ++..+ ..+.++.++|||+.++ +..+.|..||.
T Consensus         2 ~~~~~~lv~~~~~~~v~~~d~~tG~~~w~-~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~   63 (276)
T 3no2_A            2 SSPQHLLVGGSGWNKIAIINKDTKEIVWE-YPLEKGWECNSVAATKAGEILF-SYSKGAKMITR   63 (276)
T ss_dssp             -CCCEEEEECTTCSEEEEEETTTTEEEEE-EECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT
T ss_pred             CCCCcEEEeeCCCCEEEEEECCCCeEEEE-eCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC
Confidence            35665599999999999999977765543 44333 5789999999999877 56777888874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.93  E-value=0.0043  Score=53.67  Aligned_cols=72  Identities=11%  Similarity=0.047  Sum_probs=52.9

Q ss_pred             CCCceeEEEecCCCcEEEe-CCC------------------------CcEEEEeccccccceecCCCCCCCeeEEEeCCC
Q 044877           29 RGTNFQCFASTGDGSIVVG-SLD------------------------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD   83 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavG-S~d------------------------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D   83 (244)
                      .-...+++|++++|.|+++ +.+                        |.|.+||..+++..+..-.+.-....+|++++|
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            3455789999999995554 444                        479999997666444333344457889999999


Q ss_pred             CCEEEEeCC-cceEEEEe
Q 044877           84 GRWILGTTD-TYLILICT  100 (244)
Q Consensus        84 G~~lLaT~~-~~L~L~dt  100 (244)
                      |+.+++.+. ..|+.||.
T Consensus       102 g~l~v~d~~~~~v~~~~~  119 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDP  119 (329)
T ss_dssp             SCEEEEETTTTEEEEECT
T ss_pred             CCEEEEECCCCEEEEEeC
Confidence            997777664 67999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.88  E-value=0.017  Score=48.32  Aligned_cols=66  Identities=12%  Similarity=0.001  Sum_probs=49.4

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEecc-cccc---ceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSN-SMRQ---AKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~-~~r~---aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      -..++.+++|. +++.+.++.|++||.. .++.   .+.+ ......+.+|++++||+..+++ .+.|.+||.
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~  244 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTP  244 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECT
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeEEEECC
Confidence            36899999998 6778889999999974 2221   2323 3344556789999999987777 778999984

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.81  E-value=0.0023  Score=61.82  Aligned_cols=70  Identities=13%  Similarity=0.268  Sum_probs=54.8

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEecc--ccccceecCCCCCCCeeEEEeC----CCCCEEEEeCC--cceEEEE
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSN--SMRQAKTAFPGLGSPIRYVDVT----YDGRWILGTTD--TYLILIC   99 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~--~~r~aKt~lpglGdPI~~vdvS----~DG~~lLaT~~--~~L~L~d   99 (244)
                      .+....++++|++|. +++++.||.|.+||..  +.+...+ ++ .|.--.+|.+|    |||+|+++++.  +.+.+||
T Consensus       195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~-i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE-IK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD  272 (567)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-EE-CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred             CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE-Ee-cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence            444456899999997 8999999999999985  5554443 45 35556899999    69999998873  7799988


Q ss_pred             e
Q 044877          100 T  100 (244)
Q Consensus       100 t  100 (244)
                      +
T Consensus       273 ~  273 (567)
T 1qks_A          273 G  273 (567)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.77  E-value=0.011  Score=51.00  Aligned_cols=66  Identities=14%  Similarity=0.191  Sum_probs=48.9

Q ss_pred             ceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEE
Q 044877           32 NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILIC   99 (244)
Q Consensus        32 ~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~d   99 (244)
                      ...+++.+++|+|++ +.++.|+.||. +++...+.-.+.+..+.++.+++||++|++.+.  ..|..+|
T Consensus        38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd  105 (276)
T 3no2_A           38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVN  105 (276)
T ss_dssp             CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEEC
T ss_pred             CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEe
Confidence            467899999999777 66888999999 555444322223457899999999999998875  3455555

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.75  E-value=0.0012  Score=57.88  Aligned_cols=70  Identities=17%  Similarity=0.026  Sum_probs=50.9

Q ss_pred             ceeEEE-ecCCCc-EEEeCCCC------cEEEEecc-ccccce--ecCCCCCCCeeEEEeCC---CCCEEEEeCC--cce
Q 044877           32 NFQCFA-STGDGS-IVVGSLDG------KIRLYSSN-SMRQAK--TAFPGLGSPIRYVDVTY---DGRWILGTTD--TYL   95 (244)
Q Consensus        32 ~Ft~va-ts~~G~-IavGS~dG------~IRLyD~~-~~r~aK--t~lpglGdPI~~vdvS~---DG~~lLaT~~--~~L   95 (244)
                      ...+++ ++|+|. |++++..+      .|++||.. +++..+  ..++..+..+.++++||   ||+||++++.  +.|
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence            356899 999997 77766533      79999974 333221  12445566778999999   8999998874  679


Q ss_pred             EEEEee
Q 044877           96 ILICTL  101 (244)
Q Consensus        96 ~L~dt~  101 (244)
                      .+|+..
T Consensus       335 ~v~~~~  340 (365)
T 1jof_A          335 EIYRWK  340 (365)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.75  E-value=0.0045  Score=51.97  Aligned_cols=79  Identities=13%  Similarity=0.006  Sum_probs=59.3

Q ss_pred             cCCCceecccccccCCCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           14 AGAPVLNWSQGHQFSRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        14 ~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      .+..+..+.+...+     -.+++.+++|.  ++++..+|.|..||..+.  .+ .+...+..+.+|.+++||+.++++.
T Consensus        16 ~~~~~~~l~~~~~~-----~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-~~~~~~~~~~~l~~~~dg~l~v~~~   87 (296)
T 3e5z_A           16 AGAEARRLADGFTW-----TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-PEMHPSHHQNGHCLNKQGHLIACSH   87 (296)
T ss_dssp             TTCCCEEEECCCSS-----EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-EEESSCSSEEEEEECTTCCEEEEET
T ss_pred             CCCcEEEEecCCcc-----ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-EEECCCCCcceeeECCCCcEEEEec
Confidence            34445555544333     36899999998  788999999999998765  33 3444567899999999999887776


Q ss_pred             C-cceEEEEe
Q 044877           92 D-TYLILICT  100 (244)
Q Consensus        92 ~-~~L~L~dt  100 (244)
                      . ..|.+||.
T Consensus        88 ~~~~i~~~d~   97 (296)
T 3e5z_A           88 GLRRLERQRE   97 (296)
T ss_dssp             TTTEEEEECS
T ss_pred             CCCeEEEEcC
Confidence            5 67999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.72  E-value=0.007  Score=56.59  Aligned_cols=69  Identities=17%  Similarity=0.113  Sum_probs=49.2

Q ss_pred             CceeEEEecCCCc-EEEeCCC--------CcEEEEecc-cc--ccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c--ce
Q 044877           31 TNFQCFASTGDGS-IVVGSLD--------GKIRLYSSN-SM--RQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T--YL   95 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~d--------G~IRLyD~~-~~--r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~--~L   95 (244)
                      ..+.+++.||+|. ||.++.+        ..|++||.. ++  ...+.+..++...+.++.+||||+.++++.. .  .|
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l  267 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL  267 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence            3467889999998 8877755        379999987 34  1344455666789999999999995545543 4  35


Q ss_pred             EEEE
Q 044877           96 ILIC   99 (244)
Q Consensus        96 ~L~d   99 (244)
                      .+||
T Consensus       268 ~~~~  271 (662)
T 3azo_A          268 HRVD  271 (662)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5555

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.51  E-value=0.0079  Score=50.02  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=50.6

Q ss_pred             eEEEecCCCcEEEe--------CCCCcEEEEeccccccceecC---CCCCCCeeEEEeCCC-CCEEEEeCCcceEEEEe
Q 044877           34 QCFASTGDGSIVVG--------SLDGKIRLYSSNSMRQAKTAF---PGLGSPIRYVDVTYD-GRWILGTTDTYLILICT  100 (244)
Q Consensus        34 t~vats~~G~IavG--------S~dG~IRLyD~~~~r~aKt~l---pglGdPI~~vdvS~D-G~~lLaT~~~~L~L~dt  100 (244)
                      .+++.+++|.|+++        +.+|.|..||..+++......   .+++..+.+|.+++| |+.++++..+.|..||.
T Consensus        21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~   99 (314)
T 1pjx_A           21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeC
Confidence            68899999997766        678999999976554322222   135577999999999 88777777678888885

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.47  E-value=0.02  Score=46.81  Aligned_cols=69  Identities=10%  Similarity=0.113  Sum_probs=54.0

Q ss_pred             CceeEEEecCCCcEEEeCC-CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           31 TNFQCFASTGDGSIVVGSL-DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~-dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      ....+++.+++|.|.+++. +|.|..||.. ++.....++..+..+.+|.+++||+..+++. ...|..||.
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence            4578999999999877776 7899999986 4333333455667899999999999888877 466888884

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.45  E-value=0.011  Score=49.09  Aligned_cols=68  Identities=7%  Similarity=-0.018  Sum_probs=50.1

Q ss_pred             eeEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877           33 FQCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~  101 (244)
                      -..++.+++|.|.++. .+|.|..||..+++... .++.....+.++.+++||++|.+++.  +.|..|+..
T Consensus       228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM-RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE-EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE-EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            4678899999976665 67899999986444333 23333477999999999997766654  479888864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.36  E-value=0.011  Score=56.72  Aligned_cols=69  Identities=16%  Similarity=0.128  Sum_probs=51.0

Q ss_pred             eeEEEecCCCc-EEEeCCCCc----------------EEEEeccccccc-eecCCC--CCCCeeEEEeCCCCCEEEEeC-
Q 044877           33 FQCFASTGDGS-IVVGSLDGK----------------IRLYSSNSMRQA-KTAFPG--LGSPIRYVDVTYDGRWILGTT-   91 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~----------------IRLyD~~~~r~a-Kt~lpg--lGdPI~~vdvS~DG~~lLaT~-   91 (244)
                      +.+++.+|+|. |+.++.++.                |++|+..+.... +..+.+  ....+.++.+||||+||+.++ 
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            67899999997 999988876                999998665321 222232  334588999999999999765 


Q ss_pred             -----CcceEEEEee
Q 044877           92 -----DTYLILICTL  101 (244)
Q Consensus        92 -----~~~L~L~dt~  101 (244)
                           .+.|.+||..
T Consensus       253 ~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             CSSSSCCEEEEEEGG
T ss_pred             ccCCCccEEEEEECc
Confidence                 2458888863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.36  E-value=0.062  Score=46.61  Aligned_cols=67  Identities=6%  Similarity=-0.124  Sum_probs=50.8

Q ss_pred             eeEEEecCCCcEEEeCCC-----------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           33 FQCFASTGDGSIVVGSLD-----------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~IavGS~d-----------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      -..++.+++|.+++++..           +.|..||..+.+..++.--+.|....+|+++|||++|.++.. .|..||.
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~  251 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPV  251 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEET
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEEC
Confidence            367889999997766653           689999997766444321123668899999999999987766 7888886

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.27  E-value=0.0062  Score=51.59  Aligned_cols=57  Identities=19%  Similarity=0.163  Sum_probs=41.3

Q ss_pred             ceeEEEecCCCc-EEEeCCC---Cc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           32 NFQCFASTGDGS-IVVGSLD---GK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~d---G~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      ...+++.+|+|. ||..+.+   |.  |.+||..+++ .+.+.. .+. +.++.+||||++|+.++
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~-~~~l~~-~~~-~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS-SKKILE-AKN-IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE-EEEEEE-ESE-EEEEEECTTSSEEEEEE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc-eEEEEc-CCC-ccceeECCCCCEEEEEE
Confidence            356899999997 8877764   33  7777876654 332333 333 99999999999998775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.24  E-value=0.0051  Score=52.49  Aligned_cols=67  Identities=19%  Similarity=0.143  Sum_probs=46.3

Q ss_pred             eeEEEecCCCc-EEEeCC-CC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSL-DG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~-dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      +.+++++|+|. ||..+. +|  .|.+||..+++ .+.+..+.+..+..+.+||||++|+.++. ..|.+||.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~  109 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDL  109 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence            67889999998 665544 34  68888987664 33233333333444789999999987764 56999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.24  E-value=0.088  Score=44.36  Aligned_cols=62  Identities=18%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             CCceeEEEecCCCcEEEeCC-C----CcEEEEeccccccceecCC--CCCCCeeEEEeCCCCCEEEEeCC
Q 044877           30 GTNFQCFASTGDGSIVVGSL-D----GKIRLYSSNSMRQAKTAFP--GLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS~-d----G~IRLyD~~~~r~aKt~lp--glGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      .....+++.+++|.+.+++. +    +.|.+||..+.+ .+..+.  ..+..+.+|.++|||+.++++..
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEecc
Confidence            34578999999999666554 4    589999987654 222222  35678999999999998887763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.17  E-value=0.02  Score=46.55  Aligned_cols=67  Identities=12%  Similarity=0.141  Sum_probs=47.3

Q ss_pred             ceeEEEecCCCcEEE-e-CCCCcEEEEeccccccceecCC-CCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           32 NFQCFASTGDGSIVV-G-SLDGKIRLYSSNSMRQAKTAFP-GLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~Iav-G-S~dG~IRLyD~~~~r~aKt~lp-glGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .-.+++.+++|.|++ + +.+|.|+.||..+.. .. .++ .....+.+|++++||+.+++.....|..||.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~   94 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-TT-VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAA   94 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------E-ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc-cc-eEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeC
Confidence            446899999999777 6 678999999985543 22 232 2225678999999999766666667999884

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.14  E-value=0.1  Score=44.96  Aligned_cols=67  Identities=10%  Similarity=-0.010  Sum_probs=47.9

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccc-cceecC--------CCCCCCeeEEEeCC-CCCEEEEeC--CcceEEEE
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMR-QAKTAF--------PGLGSPIRYVDVTY-DGRWILGTT--DTYLILIC   99 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r-~aKt~l--------pglGdPI~~vdvS~-DG~~lLaT~--~~~L~L~d   99 (244)
                      -..+|++++|. +++.+.++.|+.||..+.. ...++-        ++.-....+|+++| +|+.+++.+  ...|++||
T Consensus        93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~  172 (329)
T 3fvz_A           93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS  172 (329)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred             ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence            46899999999 5666778999999985431 122211        11122578999999 899888885  47799998

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=95.95  E-value=0.01  Score=55.26  Aligned_cols=58  Identities=12%  Similarity=0.039  Sum_probs=47.6

Q ss_pred             CCceeEEEecCCCcEEEeCCCCcEEEEecccccc--ceecCC---------CCCCCeeEEEeCCCCCEEEE
Q 044877           30 GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQ--AKTAFP---------GLGSPIRYVDVTYDGRWILG   89 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~--aKt~lp---------glGdPI~~vdvS~DG~~lLa   89 (244)
                      ...++|++.|++| +++|..||.|++|+..+...  .++ +|         ++...|.+|...++++|+++
T Consensus       162 ~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~-I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          162 AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFE-FSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEE-ECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccce-ecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            3479999999999 89999999999998876653  333 42         24678999999999999986

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.91  E-value=0.016  Score=55.63  Aligned_cols=69  Identities=13%  Similarity=0.094  Sum_probs=50.4

Q ss_pred             CceeEEEecCCCc-EEEeCCCCc-------------EEEEecccccc-ceecC--CCCCCCeeEEEeCCCCCEEEEeC-C
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGK-------------IRLYSSNSMRQ-AKTAF--PGLGSPIRYVDVTYDGRWILGTT-D   92 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~-------------IRLyD~~~~r~-aKt~l--pglGdPI~~vdvS~DG~~lLaT~-~   92 (244)
                      .+|.+++.+++|. |+.++.|..             |++|+..+... .+..+  ++....+.++.+||||++|+.++ +
T Consensus       168 ~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          168 GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC
Confidence            3458899999998 888888876             99999866532 12222  33345789999999999999776 3


Q ss_pred             c----ceEEEE
Q 044877           93 T----YLILIC   99 (244)
Q Consensus        93 ~----~L~L~d   99 (244)
                      .    .|.+||
T Consensus       248 ~~~~~~l~~~~  258 (695)
T 2bkl_A          248 GWSENDVYWKR  258 (695)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCceEEEEEc
Confidence            3    476765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.88  E-value=0.047  Score=44.37  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=50.3

Q ss_pred             CceeEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           31 TNFQCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      ..-.+++.+++|.|.++. .++.|+.||..+.....  ++..+ ..+.+|++++||+.+++... +.|++++..
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE--CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee--eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            345789999999976665 57899999986543222  33222 56899999999997777664 679998864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.88  E-value=0.064  Score=43.70  Aligned_cols=68  Identities=6%  Similarity=-0.133  Sum_probs=52.3

Q ss_pred             CceeEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           31 TNFQCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      ....+++.+++|.|.+++ .++.|..||.. ++.....+++.+..+.+|.+ +||+..+++..+.|..+|.
T Consensus       225 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~  293 (299)
T 2z2n_A          225 ARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTL  293 (299)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEE
T ss_pred             CCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEc
Confidence            446789999999987776 67899999983 33233335666778999999 9999998887777777774

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=95.81  E-value=0.015  Score=49.93  Aligned_cols=68  Identities=9%  Similarity=0.002  Sum_probs=47.3

Q ss_pred             ceeEEEecC-CCc-EEEeCCCC------cEEEEeccccccceecCCCC-CCCeeEEEeCCCCCEEEEeCC---c---ceE
Q 044877           32 NFQCFASTG-DGS-IVVGSLDG------KIRLYSSNSMRQAKTAFPGL-GSPIRYVDVTYDGRWILGTTD---T---YLI   96 (244)
Q Consensus        32 ~Ft~vats~-~G~-IavGS~dG------~IRLyD~~~~r~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~---~---~L~   96 (244)
                      .+..++.+| +|. ||..+..+      .|.++|..+. ..+.+.+.. +.++.++.+||||++|+..+.   .   .|.
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIY  267 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEE
Confidence            367899999 997 77766543      7888887554 344344433 247899999999999875542   1   388


Q ss_pred             EEEe
Q 044877           97 LICT  100 (244)
Q Consensus        97 L~dt  100 (244)
                      +||.
T Consensus       268 ~~d~  271 (388)
T 3pe7_A          268 SADP  271 (388)
T ss_dssp             EECT
T ss_pred             EEec
Confidence            8886

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.79  E-value=0.059  Score=43.93  Aligned_cols=69  Identities=13%  Similarity=0.079  Sum_probs=53.3

Q ss_pred             CceeEEEecCCCcEEEeCC-CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           31 TNFQCFASTGDGSIVVGSL-DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~-dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      ....+++.+++|.|.++.. +|.|..||.. ++.....+|..+..+.+|.+.+||+..+++. ...|..+|.
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  132 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA  132 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECC
Confidence            4568899999999777765 7889999986 4333334565668899999999999888877 467888874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.77  E-value=0.023  Score=51.38  Aligned_cols=65  Identities=12%  Similarity=0.073  Sum_probs=47.2

Q ss_pred             EEEecCCCc-EEEeC----------CCCcEEEEeccccccceec-CCC-----CCCCeeEEEeCCCCCEEEEeCC---cc
Q 044877           35 CFASTGDGS-IVVGS----------LDGKIRLYSSNSMRQAKTA-FPG-----LGSPIRYVDVTYDGRWILGTTD---TY   94 (244)
Q Consensus        35 ~vats~~G~-IavGS----------~dG~IRLyD~~~~r~aKt~-lpg-----lGdPI~~vdvS~DG~~lLaT~~---~~   94 (244)
                      .++.||+|. +++.+          .++.|.+||..+.+...+. +++     .|..-.++.+||||+||++++.   +.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999997 88876          3678999999765533321 221     1233458999999999997762   56


Q ss_pred             eEEEE
Q 044877           95 LILIC   99 (244)
Q Consensus        95 L~L~d   99 (244)
                      |.++|
T Consensus       150 v~viD  154 (373)
T 2mad_H          150 VGLVV  154 (373)
T ss_pred             EEEEE
Confidence            99998

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.68  E-value=0.01  Score=55.37  Aligned_cols=67  Identities=16%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             EEEecCCCc-EEEeC----------CCCcEEEEeccccccceec-CCC-----CCCCeeEEEeCCCCCEEEEeC---Ccc
Q 044877           35 CFASTGDGS-IVVGS----------LDGKIRLYSSNSMRQAKTA-FPG-----LGSPIRYVDVTYDGRWILGTT---DTY   94 (244)
Q Consensus        35 ~vats~~G~-IavGS----------~dG~IRLyD~~~~r~aKt~-lpg-----lGdPI~~vdvS~DG~~lLaT~---~~~   94 (244)
                      .++.+|+|. +++++          .++.|.+||..+.+..++. +|+     .|..-.++.+||||+||.+++   .+.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999998 77776          3678999999887655432 221     244566899999999998765   367


Q ss_pred             eEEEEee
Q 044877           95 LILICTL  101 (244)
Q Consensus        95 L~L~dt~  101 (244)
                      |.+||+.
T Consensus       162 VsVID~~  168 (386)
T 3sjl_D          162 VGVVDLE  168 (386)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999974

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.63  E-value=0.029  Score=50.69  Aligned_cols=65  Identities=12%  Similarity=0.081  Sum_probs=49.7

Q ss_pred             EEEecCCCc-EEEeCC----------CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC-EEEEeC--CcceEEEEe
Q 044877           35 CFASTGDGS-IVVGSL----------DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR-WILGTT--DTYLILICT  100 (244)
Q Consensus        35 ~vats~~G~-IavGS~----------dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~-~lLaT~--~~~L~L~dt  100 (244)
                      .++++++|. ++++..          .+.|-++|..+.+..++ +| +|....+|.+||||+ .++++.  .+.|.+||+
T Consensus       271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~-i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ-IS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE-EE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            377888876 777653          36899999988776564 55 777889999999999 455554  478999997


Q ss_pred             e
Q 044877          101 L  101 (244)
Q Consensus       101 ~  101 (244)
                      .
T Consensus       349 ~  349 (373)
T 2mad_H          349 G  349 (373)
T ss_pred             C
Confidence            4

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.45  E-value=0.022  Score=48.53  Aligned_cols=69  Identities=9%  Similarity=-0.071  Sum_probs=47.5

Q ss_pred             CceeEEEecC-CCc-EEEeCCC------CcEEEEeccccccceecCCCC-CCCeeEEEeCCCCCEEEEeC-C-----cce
Q 044877           31 TNFQCFASTG-DGS-IVVGSLD------GKIRLYSSNSMRQAKTAFPGL-GSPIRYVDVTYDGRWILGTT-D-----TYL   95 (244)
Q Consensus        31 ~~Ft~vats~-~G~-IavGS~d------G~IRLyD~~~~r~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~-~-----~~L   95 (244)
                      ..+..++++| +|. ||..+.+      ..|.+||..+.+ .+.+.+.. +..+.++.+||||++|+..+ .     ..|
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            3467889999 776 7776654      358888875543 44444422 34688899999999987664 2     338


Q ss_pred             EEEEe
Q 044877           96 ILICT  100 (244)
Q Consensus        96 ~L~dt  100 (244)
                      .+||.
T Consensus       267 ~~~d~  271 (396)
T 3c5m_A          267 YKANP  271 (396)
T ss_dssp             EEECT
T ss_pred             EEEEC
Confidence            88885

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.44  E-value=0.096  Score=42.66  Aligned_cols=70  Identities=13%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             CCceeEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           30 GTNFQCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      .....+++.+++|.|.++. .+|.|..||.. ++.....+|.....+.+|.+.+||+..+++. ...|..+|.
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK   90 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence            3456799999999977776 57999999986 4333333454456789999999999888876 466888874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.42  E-value=0.0072  Score=55.55  Aligned_cols=66  Identities=11%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             EEEecCCCc-EEEeC----------CCCcEEEEeccccccceec-CCC-----CCCCeeEEEeCCCCCEEEEeC---Ccc
Q 044877           35 CFASTGDGS-IVVGS----------LDGKIRLYSSNSMRQAKTA-FPG-----LGSPIRYVDVTYDGRWILGTT---DTY   94 (244)
Q Consensus        35 ~vats~~G~-IavGS----------~dG~IRLyD~~~~r~aKt~-lpg-----lGdPI~~vdvS~DG~~lLaT~---~~~   94 (244)
                      .++.+++|. +++++          .++.|.+||..+.+..++. +|+     .|..-.++.+||||+|+..+.   .+.
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            899999997 88886          4788999999988766643 221     124457999999999999775   256


Q ss_pred             eEE--EEe
Q 044877           95 LIL--ICT  100 (244)
Q Consensus        95 L~L--~dt  100 (244)
                      |.+  ||+
T Consensus       149 v~V~~iD~  156 (368)
T 1mda_H          149 AGLSVPGA  156 (368)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEEch
Confidence            888  887

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.42  E-value=0.15  Score=49.33  Aligned_cols=57  Identities=11%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             ceeEEEecCCCc-EEEeCCC-C----cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           32 NFQCFASTGDGS-IVVGSLD-G----KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~d-G----~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      .+.+++.||+|. ||.++.+ |    .|++||..+++.....++  +..+.++++||| ++|+.+.
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--~~~~~~~~wspD-~~l~~~~  226 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--WVKFSGLAWLGN-DALLYSR  226 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--EEESCCCEESTT-SEEEEEE
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--CceeccEEEECC-CEEEEEE
Confidence            578999999998 7766554 4    599999987653332222  112367899999 9998665

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.92  E-value=0.075  Score=45.17  Aligned_cols=62  Identities=13%  Similarity=0.150  Sum_probs=46.3

Q ss_pred             eEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEE
Q 044877           34 QCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILIC   99 (244)
Q Consensus        34 t~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~d   99 (244)
                      ..++.+++|.|.+++.+| |.+||..+....+..+|   ..+.++++++|++.|..++.+.|.-++
T Consensus       242 dgi~~d~~G~lwv~~~~g-v~~~~~~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          242 DGFCVDRGGWLWSSSGTG-VCVFDSDGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             CSEEECTTSCEEECCSSE-EEEECTTSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             CeEEECCCCCEEEecCCc-EEEECCCCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            468899999999999766 99999854433333334   358999999999999888877665444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.73  E-value=0.051  Score=52.46  Aligned_cols=61  Identities=13%  Similarity=0.130  Sum_probs=48.8

Q ss_pred             ecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           38 STGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        38 ts~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      .++.+. +++.+.+|.|.++|..+++... .++ .|....++.+||||+++.+++. ..|.+||+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~-~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~  225 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKT-VLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDL  225 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEE-EEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEE-EEe-CCCCccceEECCCCCEEEEEcCCCeEEEEEC
Confidence            334444 6788889999999998776554 355 7878889999999999998875 68999997

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.67  E-value=0.34  Score=40.96  Aligned_cols=67  Identities=12%  Similarity=0.059  Sum_probs=43.3

Q ss_pred             CceeEEEecCCCcEEEeCC------------CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC-cceE
Q 044877           31 TNFQCFASTGDGSIVVGSL------------DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD-TYLI   96 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~------------dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~-~~L~   96 (244)
                      +.+..++++++|.|.+|+.            .|.|..+|.. ++ .....+++. ...+|+++|||++|..+ +. +.|.
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~-~pngi~~spdg~~lyv~~~~~~~i~  174 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVD-ISNGLDWSLDHKIFYYIDSLSYSVD  174 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEES-BEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccc-cccceEEcCCCCEEEEecCCCCcEE
Confidence            4478899999999888763            2334444432 22 222333333 34799999999987644 43 6688


Q ss_pred             EEEe
Q 044877           97 LICT  100 (244)
Q Consensus        97 L~dt  100 (244)
                      .||.
T Consensus       175 ~~~~  178 (297)
T 3g4e_A          175 AFDY  178 (297)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8885

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=94.66  E-value=0.024  Score=53.36  Aligned_cols=67  Identities=13%  Similarity=0.118  Sum_probs=51.4

Q ss_pred             EEEecCCCc-EEEeC----------CCCcEEEEeccccccceec-CCC-----CCCCeeEEEeCCCCCEEEEeC---Ccc
Q 044877           35 CFASTGDGS-IVVGS----------LDGKIRLYSSNSMRQAKTA-FPG-----LGSPIRYVDVTYDGRWILGTT---DTY   94 (244)
Q Consensus        35 ~vats~~G~-IavGS----------~dG~IRLyD~~~~r~aKt~-lpg-----lGdPI~~vdvS~DG~~lLaT~---~~~   94 (244)
                      .++.|++|. +++++          .++.|.++|..+.+..++. +++     .|..-.++.+||||+||.++.   .+.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999998 88887          4788999999887655532 231     244567899999999999764   367


Q ss_pred             eEEEEee
Q 044877           95 LILICTL  101 (244)
Q Consensus        95 L~L~dt~  101 (244)
                      |.++|+.
T Consensus       202 VsVID~~  208 (426)
T 3c75_H          202 VGVVDLE  208 (426)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999974

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=94.27  E-value=0.042  Score=50.44  Aligned_cols=64  Identities=9%  Similarity=0.001  Sum_probs=48.2

Q ss_pred             EEecCCCc-EEEeCC-C--------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC---CcceEEEEee
Q 044877           36 FASTGDGS-IVVGSL-D--------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT---DTYLILICTL  101 (244)
Q Consensus        36 vats~~G~-IavGS~-d--------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~---~~~L~L~dt~  101 (244)
                      ++++++|. ++++.. .        +.+-++|..+.+..+ .+| +|....+|.+||||++++.++   .+.|.+||+.
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~-~i~-vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-PIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-CCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE-EEE-CCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            78999876 776543 2        345599998877665 466 777899999999999766554   3779999974

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=93.90  E-value=0.15  Score=49.39  Aligned_cols=69  Identities=16%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             eeEEEecCCCcEEEeCCCCc--------------EEEEecccccc-ceecCCCCCC--CeeEEEeCCCCCEEEEeCC---
Q 044877           33 FQCFASTGDGSIVVGSLDGK--------------IRLYSSNSMRQ-AKTAFPGLGS--PIRYVDVTYDGRWILGTTD---   92 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~--------------IRLyD~~~~r~-aKt~lpglGd--PI~~vdvS~DG~~lLaT~~---   92 (244)
                      |..++.+++..|+.++.++.              |++|+..+... ....+..-++  .+.++.+||||+||+.++.   
T Consensus       211 ~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          211 FSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             SCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             eccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            46788999933888887765              89999865432 2223333333  4899999999999997652   


Q ss_pred             ---cceEEEEee
Q 044877           93 ---TYLILICTL  101 (244)
Q Consensus        93 ---~~L~L~dt~  101 (244)
                         +.|.+||..
T Consensus       291 ~~~~~l~~~d~~  302 (741)
T 1yr2_A          291 DPVNTVHVARVT  302 (741)
T ss_dssp             CSCCEEEEEEEE
T ss_pred             CCcceEEEEECC
Confidence               258888863

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.73  E-value=2.9  Score=40.41  Aligned_cols=70  Identities=16%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             CCceeEEEecCCCcEEEeCCCCcEEEEecccccccee-cCC---CCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           30 GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKT-AFP---GLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt-~lp---glGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      ...+.+++.+++|.|.+|+..| |..||..+.+.... ..+   .....|.+|...++|+..++|....|..+|.
T Consensus       449 ~~~v~~i~~d~~g~lwigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~  522 (781)
T 3v9f_A          449 LLDVRVFYEDKNKKIWIGTHAG-VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTP  522 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEETTE-EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECT
T ss_pred             CCeEEEEEECCCCCEEEEECCc-eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeC
Confidence            4568899999999999998855 67788755432111 111   1257899999999999888888677877774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=93.70  E-value=0.33  Score=48.00  Aligned_cols=49  Identities=4%  Similarity=0.064  Sum_probs=36.1

Q ss_pred             cEEEEeccc--cccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877           52 KIRLYSSNS--MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL  101 (244)
Q Consensus        52 ~IRLyD~~~--~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~  101 (244)
                      .|.+.|..+  .+.....+| .|..-.+|.+||||+|++++..  +.+.++|+.
T Consensus       255 ~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~  307 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  307 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             cEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECc
Confidence            477888765  222011345 6777789999999999999985  779999975

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=93.64  E-value=0.21  Score=48.10  Aligned_cols=58  Identities=14%  Similarity=0.139  Sum_probs=41.1

Q ss_pred             ceeEEEecCCCc-EE-----EeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877           32 NFQCFASTGDGS-IV-----VGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        32 ~Ft~vats~~G~-Ia-----vGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      .+..++.||+|. ||     .|+.+-.||+||..+++.....+++.  ...++++| ||+.|+-++.
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~  193 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSY  193 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEES
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEe
Confidence            578889999998 66     35556789999998776433333322  13567899 9999986653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=93.53  E-value=0.13  Score=47.69  Aligned_cols=64  Identities=6%  Similarity=0.084  Sum_probs=48.7

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      .+++++  +|. +++| .+|.|++||.....+.+ .++.+..+|.++...+.. .++++.+..|.+||..
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~-~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFR-TVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLR  154 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEE-EEEECSSCEEEEEECSSE-EEEEETTSEEEEEETT
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccC-ccceeecceeeEEecCCC-EEEEECCCCEEEEEcc
Confidence            788999  555 8888 88999999987655444 456778889888777653 6667778889999863

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=93.52  E-value=0.19  Score=45.73  Aligned_cols=65  Identities=18%  Similarity=0.216  Sum_probs=47.0

Q ss_pred             eeEEEecCCCcEEE-eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c--ceEEEEe
Q 044877           33 FQCFASTGDGSIVV-GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T--YLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~Iav-GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~--~L~L~dt  100 (244)
                      -..++++++|.|++ ...++.||.||..+++ ..+.+.. +.... +++++||++|+++.. .  .|..+|.
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTE-EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCE-EEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence            46899999999554 4556899999987654 4444444 33333 999999999988875 3  5777775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=93.28  E-value=0.41  Score=40.49  Aligned_cols=63  Identities=13%  Similarity=0.146  Sum_probs=46.7

Q ss_pred             eEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           34 QCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        34 t~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .+.+.++ +|. +++....+.|..||..+.+. . .+ .++..+.+|.+++||++++++ .+.|.+||.
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~-~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~   80 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q-RV-TMDAPVSSVALRQSGGYVATI-GTKFCALNW   80 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E-EE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEET
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E-EE-eCCCceEEEEECCCCCEEEEE-CCeEEEEEC
Confidence            4667777 455 67777889999999876542 2 22 256789999999999977665 677888884

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=93.28  E-value=4  Score=39.55  Aligned_cols=68  Identities=13%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             CCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCC-----CC-CCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           30 GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFP-----GL-GSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lp-----gl-GdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      ...+.+++.+++|.|-+|+..| |..||..+.+... ...     ++ ...|.+|...++|+..++|. ..|..||.
T Consensus       451 ~~~v~~i~~d~~g~lwigt~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~  524 (795)
T 4a2l_A          451 NENVYAILPDGEGNLWLGTLSA-LVRFNPEQRSFTT-IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQ  524 (795)
T ss_dssp             CSCEEEEEECSSSCEEEEESSC-EEEEETTTTEEEE-CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEE
T ss_pred             CCeeEEEEECCCCCEEEEecCc-eeEEeCCCCeEEE-ccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeC
Confidence            3467899999999999998865 6778876543221 111     22 36899999999999888887 78888885

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=93.24  E-value=0.26  Score=42.62  Aligned_cols=60  Identities=20%  Similarity=0.168  Sum_probs=41.9

Q ss_pred             CceeEEEecCCCcEEEeCCCCcEEEEeccccccceec-CC-CC-CCCeeEEEeCCCCCEEEEeC
Q 044877           31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTA-FP-GL-GSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~-lp-gl-GdPI~~vdvS~DG~~lLaT~   91 (244)
                      ....+++.+++|.+++++.+| |.+||..+++..... .+ +. ...+.++.++|||+.++++.
T Consensus        90 ~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~  152 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTM  152 (326)
T ss_dssp             SCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEECCC-EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeC
Confidence            457889999999988887666 999998655422211 11 11 23588999999999877664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=92.95  E-value=0.31  Score=42.13  Aligned_cols=67  Identities=6%  Similarity=-0.124  Sum_probs=46.2

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEE-Ee----C-CcceEEEEe
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWIL-GT----T-DTYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lL-aT----~-~~~L~L~dt  100 (244)
                      .-..++++++|. +++.+.  .|..||..+++...+ .++..+....+|+++||+.+|. +.    . .+.|.+||.
T Consensus       226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            347899999776 777765  999999976653222 2333257789999999555554 54    3 366999985

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=92.91  E-value=0.087  Score=49.08  Aligned_cols=63  Identities=17%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             EEecCCCc-EEEeCC-----CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-----------CcceEEE
Q 044877           36 FASTGDGS-IVVGSL-----DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-----------DTYLILI   98 (244)
Q Consensus        36 vats~~G~-IavGS~-----dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-----------~~~L~L~   98 (244)
                      ++..|+|+ +++.+.     +|.|-++|..+.+... .+|.-..|  +|.+||||++|.+++           .++|.+|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~-~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG-MIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE-EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEE-EEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            45567887 777766     6899999998876554 45633346  699999999997665           3679999


Q ss_pred             Eee
Q 044877           99 CTL  101 (244)
Q Consensus        99 dt~  101 (244)
                      |+.
T Consensus       115 D~~  117 (386)
T 3sjl_D          115 DPV  117 (386)
T ss_dssp             CTT
T ss_pred             ECC
Confidence            973

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=92.87  E-value=0.26  Score=42.60  Aligned_cols=63  Identities=16%  Similarity=0.055  Sum_probs=47.5

Q ss_pred             eEEEecCC-Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           34 QCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        34 t~vats~~-G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .+.+.+++ +. ++++..+|.|..||..+++...  ++ +...|.+|.+++||++++++ ...|.+||.
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~~-~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~  116 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV--HA-LPFMGSALAKISDSKQLIAS-DDGLFLRDT  116 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--EE-CSSCEEEEEEEETTEEEEEE-TTEEEEEET
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EE-CCCcceEEEEeCCCeEEEEE-CCCEEEEEC
Confidence            67888886 45 6778889999999987654222  22 35689999999999988776 556888884

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=92.75  E-value=0.063  Score=50.42  Aligned_cols=64  Identities=13%  Similarity=0.124  Sum_probs=50.5

Q ss_pred             EEecCCCc-EEEeCC----------CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC-EEEEeC--CcceEEEEee
Q 044877           36 FASTGDGS-IVVGSL----------DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR-WILGTT--DTYLILICTL  101 (244)
Q Consensus        36 vats~~G~-IavGS~----------dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~-~lLaT~--~~~L~L~dt~  101 (244)
                      ++++++|. +++...          .+.|-++|..+.+..++ +| +|..-.+|.+||||+ .+++++  .+.|.+||+.
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~-I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK-IE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-EE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE-EE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            68888876 666542          35799999998876664 56 777899999999999 777776  4789999974

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.44  E-value=0.48  Score=40.43  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=50.6

Q ss_pred             cccccCCCCceeEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cc--eEEE
Q 044877           23 QGHQFSRGTNFQCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TY--LILI   98 (244)
Q Consensus        23 ~~k~Y~~~~~Ft~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~--L~L~   98 (244)
                      ...++....--..++.+++|.|++.+ ..|.|..||..+.  ....++ .+....+|++++||+.++|... +.  |..+
T Consensus        24 ~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           24 IITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL  100 (306)
T ss_dssp             EEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence            33445444556799999999977765 7899999998543  222232 4567899999999997766643 23  5444


Q ss_pred             E
Q 044877           99 C   99 (244)
Q Consensus        99 d   99 (244)
                      |
T Consensus       101 d  101 (306)
T 2p4o_A          101 V  101 (306)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=92.34  E-value=0.21  Score=48.13  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=46.5

Q ss_pred             eeEEEecCCCc-EEEeCCCCc-------------EEEEecccccc-ceecCCCC---CCCeeEEEeCCCCCEEEEeCC--
Q 044877           33 FQCFASTGDGS-IVVGSLDGK-------------IRLYSSNSMRQ-AKTAFPGL---GSPIRYVDVTYDGRWILGTTD--   92 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~-------------IRLyD~~~~r~-aKt~lpgl---GdPI~~vdvS~DG~~lLaT~~--   92 (244)
                      +.+++.+ +|. |+.++.++.             |++|+.-+... ....+..-   ..-+.++.+||||+||+.+..  
T Consensus       177 ~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          177 FSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             SCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             eccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            5678888 887 888888854             99999865432 23233322   234689999999999986532  


Q ss_pred             ---cceEEEEe
Q 044877           93 ---TYLILICT  100 (244)
Q Consensus        93 ---~~L~L~dt  100 (244)
                         +.|.++|.
T Consensus       256 ~~~~~i~~~d~  266 (693)
T 3iuj_A          256 TSGNRLYVKDL  266 (693)
T ss_dssp             SSCCEEEEEET
T ss_pred             CCCcEEEEEEC
Confidence               35888885

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=92.23  E-value=7.3  Score=37.73  Aligned_cols=72  Identities=21%  Similarity=0.346  Sum_probs=53.9

Q ss_pred             CCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCC------CC-CCCeeEEEeCCCCC-EEEEeCCcceEEEEe
Q 044877           29 RGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFP------GL-GSPIRYVDVTYDGR-WILGTTDTYLILICT  100 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lp------gl-GdPI~~vdvS~DG~-~lLaT~~~~L~L~dt  100 (244)
                      ..+.+.|++.+++|.|-+|+.+|-|..||..+.+......+      ++ ...|.+|...++|+ ..++|....|.++|.
T Consensus       355 ~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          355 SDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             SCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            35568999999999999999998899999865432221111      12 46799999999999 566777788999884

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=91.63  E-value=0.45  Score=43.18  Aligned_cols=69  Identities=10%  Similarity=0.192  Sum_probs=46.7

Q ss_pred             CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceec----CCC-CCC-CeeEEEeCCC-CCEEEEeCC-cceEEEEe
Q 044877           31 TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTA----FPG-LGS-PIRYVDVTYD-GRWILGTTD-TYLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~----lpg-lGd-PI~~vdvS~D-G~~lLaT~~-~~L~L~dt  100 (244)
                      ....++++++ +|.|++...+|.|+.||..+.. ....    ..+ .+. |..+|+++|+ |..+++.+. ..|+.|+.
T Consensus       219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             SCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            3357899999 8889888889999999986543 2222    222 221 3349999996 544445554 66888874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=91.58  E-value=0.41  Score=40.24  Aligned_cols=57  Identities=11%  Similarity=0.076  Sum_probs=40.9

Q ss_pred             cCCCc-EEEeCCC--------CcEEEEeccccccceecCCCCCCCeeE-EEeCCCCCEEEEeC-CcceEEEEee
Q 044877           39 TGDGS-IVVGSLD--------GKIRLYSSNSMRQAKTAFPGLGSPIRY-VDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        39 s~~G~-IavGS~d--------G~IRLyD~~~~r~aKt~lpglGdPI~~-vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      +|+|. ||.++.+        +.|.+||  +++ .+.+++++..+|.+ +.++ || .+++.+ +..++|| ..
T Consensus       223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            88997 8777654        4789999  443 55567777788987 9999 99 444444 5678888 53

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=90.84  E-value=0.1  Score=46.49  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           41 DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        41 ~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      +|.|++|+.||.|+.||..+++..-+ ++.  +++.+..+.+||+.+++.+ +..|..||..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~-~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWT-LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEE-EEC--CCSCCCC-----CCEEECTTTCCEEEC---
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEE-ecC--CCceecceEcCCCEEEEeCCCCEEEEEECC
Confidence            55799999999999999887765532 333  5677777778887776654 6889999974

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=90.82  E-value=10  Score=36.54  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=53.0

Q ss_pred             CCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCC-C-CCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           30 GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFP-G-LGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        30 ~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lp-g-lGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .+.+.+++.+++|.|-+|+.+|-|-.||..+++ .+.... + ....|.+|...++|+..++|. ..|..+|.
T Consensus       406 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~  476 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDL  476 (781)
T ss_dssp             CSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEES
T ss_pred             CcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeC
Confidence            456889999999999999987778889986554 332221 2 356899999999999888887 77888884

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=90.80  E-value=0.5  Score=39.23  Aligned_cols=67  Identities=16%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      .++++.+++|.|.+|+.+|.|..||. +++... .++--+..+.++.+.+||+..++|....|.+.+..
T Consensus       257 ~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~-~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          257 ESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKW-NFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL  323 (330)
T ss_dssp             CSCCEECTTSCEEEECTTCEEEEECT-TSCEEE-EEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred             cccceEcCCCeEEEecCCCCEEEECC-CCcEEE-EEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence            34566666778888888888888886 333221 12212455677777788887777666667665543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=90.57  E-value=0.72  Score=39.00  Aligned_cols=64  Identities=5%  Similarity=-0.126  Sum_probs=48.2

Q ss_pred             eEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           34 QCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        34 t~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      ...+.+++|.  ++++..+|.|..||.. ++ .. .+...+..+.++.+++||+.++++.. ..|.+||.
T Consensus        48 egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~-~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD-VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE-EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE-EEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            5778899988  7888889999999983 33 22 23334567899999999997777664 56888873

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=89.97  E-value=0.75  Score=39.20  Aligned_cols=66  Identities=12%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             eeEEEecC-CCcEEEeCC------------------CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC
Q 044877           33 FQCFASTG-DGSIVVGSL------------------DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD   92 (244)
Q Consensus        33 Ft~vats~-~G~IavGS~------------------dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~   92 (244)
                      ...++.++ +|.|+++..                  +|.|..||..+++ .+....++..| .+|++++||++|..+ +.
T Consensus       128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~~~~~~~p-~gia~~~dg~~lyv~d~~  205 (322)
T 2fp8_A          128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE-TTLLLKELHVP-GGAEVSADSSFVLVAEFL  205 (322)
T ss_dssp             EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-EEEEEEEESCC-CEEEECTTSSEEEEEEGG
T ss_pred             cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-EEEeccCCccC-cceEECCCCCEEEEEeCC
Confidence            46799999 999887653                  3778888875543 33333444444 589999999976644 43


Q ss_pred             -cceEEEEe
Q 044877           93 -TYLILICT  100 (244)
Q Consensus        93 -~~L~L~dt  100 (244)
                       ..|..++.
T Consensus       206 ~~~I~~~~~  214 (322)
T 2fp8_A          206 SHQIVKYWL  214 (322)
T ss_dssp             GTEEEEEES
T ss_pred             CCeEEEEEC
Confidence             66888885

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=89.88  E-value=0.35  Score=46.49  Aligned_cols=58  Identities=17%  Similarity=0.232  Sum_probs=40.5

Q ss_pred             ceeEEEecCCCc-EEEeCC-CCcEEEEeccc---cccceecCCCCC-----------CC----eeEEEeCCCCCEEEEeC
Q 044877           32 NFQCFASTGDGS-IVVGSL-DGKIRLYSSNS---MRQAKTAFPGLG-----------SP----IRYVDVTYDGRWILGTT   91 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~-dG~IRLyD~~~---~r~aKt~lpglG-----------dP----I~~vdvS~DG~~lLaT~   91 (244)
                      --+.++.|++|. ++++.. .|.|++||...   .+... .++ +|           .+    =.++.+||||+||++|+
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~-~I~-tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTG-KVK-LGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEE-EEE-CBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE-EEE-eCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            357899999998 666554 78999999742   12122 122 33           22    27899999999999888

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=89.87  E-value=1.2  Score=38.63  Aligned_cols=67  Identities=9%  Similarity=0.063  Sum_probs=43.7

Q ss_pred             eeEEEecC-CCcEEEeC----CCCcEEEEeccccccceecCCC-----------------------------CCCCeeEE
Q 044877           33 FQCFASTG-DGSIVVGS----LDGKIRLYSSNSMRQAKTAFPG-----------------------------LGSPIRYV   78 (244)
Q Consensus        33 Ft~vats~-~G~IavGS----~dG~IRLyD~~~~r~aKt~lpg-----------------------------lGdPI~~v   78 (244)
                      +..+++++ +|.+++..    .++.|.+||..+++..+ .+.+                             ....+.+|
T Consensus       122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r-~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gi  200 (343)
T 2qe8_A          122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR-VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGI  200 (343)
T ss_dssp             CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE-ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEE
T ss_pred             cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE-EecCCCcccccccceeECCEEEEeccCCCceeceeccccee
Confidence            47889997 46765553    57899999986554222 2322                             11236889


Q ss_pred             EeCCCCCEEEEeCC--cceEEEEe
Q 044877           79 DVTYDGRWILGTTD--TYLILICT  100 (244)
Q Consensus        79 dvS~DG~~lLaT~~--~~L~L~dt  100 (244)
                      ++||||++|..+..  +.|.-+++
T Consensus       201 a~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          201 VLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             EECTTSCEEEEEESSCSEEEEEEH
T ss_pred             EeccCCCEEEEEeCCCCeEEEEEH
Confidence            99999998886654  33544454

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=89.36  E-value=1.6  Score=38.70  Aligned_cols=56  Identities=14%  Similarity=0.227  Sum_probs=37.5

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCC----CCCCCeeEEEeCCC---CCEEEEe
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFP----GLGSPIRYVDVTYD---GRWILGT   90 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lp----glGdPI~~vdvS~D---G~~lLaT   90 (244)
                      =..++++++|.|+++...|.|+.++. +.......+|    +.+ -..+|+++||   +.+|.++
T Consensus        33 P~~ia~~pdG~l~V~e~~g~I~~i~~-g~~~~~~~~~v~~~g~~-~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           33 PWALAFLPDGGMLIAERPGRIRLFRE-GRLSTYAELSVYHRGES-GLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEEET-TEEEEEEECCCCCSTTC-SEEEEEECTTTTTSCEEEEE
T ss_pred             ceEEEEcCCCeEEEEeCCCeEEEEEC-CCccEeecceEeecCCC-CceeEEECCCCCCCCEEEEE
Confidence            36899999999999999999999983 2111111122    233 4589999999   5555433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=88.87  E-value=0.79  Score=38.01  Aligned_cols=18  Identities=6%  Similarity=-0.101  Sum_probs=12.5

Q ss_pred             cceEEEEeeCCeEEEEec
Q 044877          157 QERHLVATVGKFSVIWNF  174 (244)
Q Consensus       157 ~E~~IvtStG~fvvvWn~  174 (244)
                      +..+.+++.+..++.+|-
T Consensus       265 ~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          265 TDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             TSCEEEECTTCEEEEECT
T ss_pred             CCeEEEecCCCCEEEECC
Confidence            456667777768888873

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.42  E-value=0.94  Score=45.22  Aligned_cols=86  Identities=13%  Similarity=0.184  Sum_probs=50.4

Q ss_pred             CCCCeeEEEeCCCCCEEEEeCC--cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeee--
Q 044877           71 LGSPIRYVDVTYDGRWILGTTD--TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA--  146 (244)
Q Consensus        71 lGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a--  146 (244)
                      ..-.--++++||||+|++++-+  .++-++|..-          +..-|.++       .|.|+++...-.++..-|.  
T Consensus       321 ~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k----------~~~~~~~k-------~~~~~~~~~ae~e~GlGPlHt  383 (638)
T 3sbq_A          321 VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDK----------LPDLFAGK-------LADPRDVIVGEPELGLGPLHT  383 (638)
T ss_dssp             ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG----------HHHHHTTC-------CSCGGGGEEECCBCCSCEEEE
T ss_pred             CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeeh----------hhhhhhcc-------ccCcccceEeeccCCCcccEE
Confidence            4444568999999999999974  7799999642          11112222       2345554333222333333  


Q ss_pred             eeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          147 QFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       147 kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                      .|+     +.+.-..+-..++-|+.||+++.+
T Consensus       384 ~Fd-----~~G~aYTtlfidSqvvkWni~~a~  410 (638)
T 3sbq_A          384 TFD-----GRGNAYTTLFIDSQVVKWNMEEAV  410 (638)
T ss_dssp             EEC-----SSSEEEEEETTTTEEEEEEHHHHH
T ss_pred             EEC-----CCCceEeeeeecceEEEEeccHHH
Confidence            453     223222223378999999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=88.39  E-value=0.88  Score=39.43  Aligned_cols=58  Identities=16%  Similarity=0.035  Sum_probs=40.4

Q ss_pred             eEEEecCCCcE-EEeCCCCcEEEEeccccccceecCC-CCCCCeeEEEeCCCCCEEEEeCC
Q 044877           34 QCFASTGDGSI-VVGSLDGKIRLYSSNSMRQAKTAFP-GLGSPIRYVDVTYDGRWILGTTD   92 (244)
Q Consensus        34 t~vats~~G~I-avGS~dG~IRLyD~~~~r~aKt~lp-glGdPI~~vdvS~DG~~lLaT~~   92 (244)
                      ..++++++|.| ++.+.++.|+.||..+++ .++... ....-.++|++++||+.+++++.
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence            46899999994 556678899999983333 222221 12445789999999987777764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=88.19  E-value=0.9  Score=38.68  Aligned_cols=66  Identities=9%  Similarity=0.071  Sum_probs=47.3

Q ss_pred             eEEEecCCCc-EEEeCCCCcEEEEeccccccceecC-C------------------CCCCCeeEEEeCC-CCCEEEEeCC
Q 044877           34 QCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAF-P------------------GLGSPIRYVDVTY-DGRWILGTTD   92 (244)
Q Consensus        34 t~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~l-p------------------glGdPI~~vdvS~-DG~~lLaT~~   92 (244)
                      .+++.+++|. ++++..+|.|..||..+.+ .++.. +                  ..+....+|.+.+ +|+.++|...
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            5788999998 9999999999999986542 22111 1                  0112468999997 8887777776


Q ss_pred             cceEEEEe
Q 044877           93 TYLILICT  100 (244)
Q Consensus        93 ~~L~L~dt  100 (244)
                      ..|..+|.
T Consensus       101 ~~i~~~d~  108 (322)
T 2fp8_A          101 YHLSVVGS  108 (322)
T ss_dssp             TEEEEECT
T ss_pred             CCEEEEeC
Confidence            66777763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=86.83  E-value=2  Score=39.82  Aligned_cols=69  Identities=13%  Similarity=0.164  Sum_probs=49.3

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEecc--c---ccc-ceecCCCCCCCeeEEEe--CCCCC-EEEEeCC--cceEEEEee
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSN--S---MRQ-AKTAFPGLGSPIRYVDV--TYDGR-WILGTTD--TYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~--~---~r~-aKt~lpglGdPI~~vdv--S~DG~-~lLaT~~--~~L~L~dt~  101 (244)
                      --|++=.+.|.|++|-++--|..||..  +   .+. ++--.+++...+.+|++  .+||+ ||+++|+  +.+.+||..
T Consensus       183 EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          183 EGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             ceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            345555558889999998889999964  1   111 11113456678999999  78888 9999995  679999963

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=86.82  E-value=2  Score=39.36  Aligned_cols=67  Identities=10%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             eeEEEecC-CCcEEEeC-CCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEe-CC-cceEEEEe
Q 044877           33 FQCFASTG-DGSIVVGS-LDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGT-TD-TYLILICT  100 (244)
Q Consensus        33 Ft~vats~-~G~IavGS-~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT-~~-~~L~L~dt  100 (244)
                      -..+++++ +|.|+++. ..+.|+.||..+... ....+++.+. -.+|+++|||++|..+ .. ..|..++.
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~-P~gia~~pdG~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW-EFHIQFHPSGNYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC-CEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc-ceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence            36788999 88977655 678899999865432 1112233223 4699999999966654 43 66888775

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=86.81  E-value=1.5  Score=40.41  Aligned_cols=67  Identities=10%  Similarity=0.046  Sum_probs=44.3

Q ss_pred             eeEEEecC-CCcEEEeC-CCCcEEEEeccccccceecCCCCC-CC-eeEEEeCCCCCEEEEe-CC-cceEEEEe
Q 044877           33 FQCFASTG-DGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLG-SP-IRYVDVTYDGRWILGT-TD-TYLILICT  100 (244)
Q Consensus        33 Ft~vats~-~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglG-dP-I~~vdvS~DG~~lLaT-~~-~~L~L~dt  100 (244)
                      ...+++++ +|.|+++. ..|.|+.||..++....+++ ..+ .+ -.+|+++|||++|..+ +. ..|+.++.
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~  302 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY  302 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence            46788999 89988776 56789999986443212222 122 12 2379999999966544 43 66888774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=85.77  E-value=2.4  Score=41.84  Aligned_cols=65  Identities=14%  Similarity=0.076  Sum_probs=50.4

Q ss_pred             eeEEEecCCCc--EEEeCCCCcEEEEeccccc------------cceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceE
Q 044877           33 FQCFASTGDGS--IVVGSLDGKIRLYSSNSMR------------QAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLI   96 (244)
Q Consensus        33 Ft~vats~~G~--IavGS~dG~IRLyD~~~~r------------~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~   96 (244)
                      --++++||||.  ++++-.++.|-+||..+.+            ...  -+.+|.--.|+.|++|| ++-.++  ++.+.
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~--~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~  355 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA--EPELGLGPLHTAFDGRG-NAYTSLFLDSQVV  355 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE--CCBCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE--EcCCCCCcceEEECCCC-eEEEEEecCCcEE
Confidence            46899999998  6777789999999997542            122  23477778999999999 666665  47799


Q ss_pred             EEEe
Q 044877           97 LICT  100 (244)
Q Consensus        97 L~dt  100 (244)
                      .||.
T Consensus       356 kwdi  359 (595)
T 1fwx_A          356 KWNI  359 (595)
T ss_dssp             EEEH
T ss_pred             EEEh
Confidence            9995

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=83.62  E-value=12  Score=31.93  Aligned_cols=60  Identities=8%  Similarity=0.138  Sum_probs=40.2

Q ss_pred             CCcEEEeCCCCcEEEEeccccccc-eecCCCC-------CCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           41 DGSIVVGSLDGKIRLYSSNSMRQA-KTAFPGL-------GSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        41 ~G~IavGS~dG~IRLyD~~~~r~a-Kt~lpgl-------GdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      +|.|++++.+|.|..||..+++.. +..++.-       +.++.+.-...+|+.++++.+..|..+|.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~  120 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNT  120 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEET
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEEC
Confidence            567999999999999999766543 2222211       44555444445666666666788988886

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=83.07  E-value=3.3  Score=35.10  Aligned_cols=58  Identities=12%  Similarity=-0.055  Sum_probs=39.7

Q ss_pred             eEEEecCCCcEEEeCC-CCcEEEEecccccccee-cCCCCCCCeeEEEeC---CCCCEEEEeCC
Q 044877           34 QCFASTGDGSIVVGSL-DGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVT---YDGRWILGTTD   92 (244)
Q Consensus        34 t~vats~~G~IavGS~-dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS---~DG~~lLaT~~   92 (244)
                      ..++++++|+|+++.. .+.|..||..+ +.... .++.-..-.++++++   +|+++|.+|+.
T Consensus       215 ~gi~vd~dG~l~va~~~~~~V~~~~~~G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          215 DDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             SSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCeEECCCCCEEEEeCCCCeEEEECCCC-CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            5688999999777764 68899999743 22111 122112457899999   89998887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=81.57  E-value=2.4  Score=41.57  Aligned_cols=68  Identities=7%  Similarity=-0.073  Sum_probs=44.3

Q ss_pred             eeEEEecCCCc-EEEeCCC-----CcEEEEeccccccc-eecCC-CCCCCeeEEEeCCCCCEEEEeCC----cceEEEEe
Q 044877           33 FQCFASTGDGS-IVVGSLD-----GKIRLYSSNSMRQA-KTAFP-GLGSPIRYVDVTYDGRWILGTTD----TYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~d-----G~IRLyD~~~~r~a-Kt~lp-glGdPI~~vdvS~DG~~lLaT~~----~~L~L~dt  100 (244)
                      +..++.+++|. |+..+.|     ..|.+++..+.... ...+. ..+.-..++.+||||+||+.++.    +.|.++|.
T Consensus       223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~  302 (751)
T 2xe4_A          223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL  302 (751)
T ss_dssp             CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred             eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence            56788999996 7776665     25777777554211 22221 12334678999999999996652    33778875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=80.72  E-value=1.4  Score=37.95  Aligned_cols=58  Identities=21%  Similarity=0.266  Sum_probs=39.1

Q ss_pred             CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEE
Q 044877           41 DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILIC   99 (244)
Q Consensus        41 ~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~d   99 (244)
                      +|.|++++.+|.|..||..+++..- ..+..+.++.+.-+..+|+.++.+.+..|..||
T Consensus       318 ~~~l~v~~~~g~l~~~d~~tG~~~~-~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          318 NGNLVVGDSEGYLHWINVEDGRFVA-QQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEE-EEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEE-EEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence            5689999999999999987765332 122224444443333577777677677888776

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=80.44  E-value=4.9  Score=35.79  Aligned_cols=57  Identities=18%  Similarity=0.193  Sum_probs=38.5

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCC----CCCCCeeEEEeCCC----CCEEEEeC
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFP----GLGSPIRYVDVTYD----GRWILGTT   91 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lp----glGdPI~~vdvS~D----G~~lLaT~   91 (244)
                      =.++++.++|.|+++..+|.|+++|.. ++..-..+|    +. .-..+|+++||    |...++.+
T Consensus        31 P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~-~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           31 PWSIAPLGGGRYLVTERPGRLVLISPS-GKKLVASFDVANVGE-AGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             EEEEEEEETTEEEEEETTTEEEEECSS-CEEEEEECCCCCSTT-CSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CeEEEEcCCCeEEEEeCCCEEEEEeCC-CceEeeccceeecCC-CceeeEEeCCCCCcCCEEEEEEe
Confidence            468999999999999999999999853 321111122    22 34689999998    44444444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=80.27  E-value=2  Score=41.98  Aligned_cols=53  Identities=19%  Similarity=0.287  Sum_probs=36.8

Q ss_pred             EEecCCCcEEEeCCCCcEEEEeccccccce-ecCC--CCCCCeeEEEeCCCCCEEEEeC
Q 044877           36 FASTGDGSIVVGSLDGKIRLYSSNSMRQAK-TAFP--GLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        36 vats~~G~IavGS~dG~IRLyD~~~~r~aK-t~lp--glGdPI~~vdvS~DG~~lLaT~   91 (244)
                      ..++..|-|++|+.||.||.||..+++..- ..++  ..+.|++   ++.||+..++..
T Consensus       481 ~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~t---y~~~G~qyv~~~  536 (689)
T 1yiq_A          481 TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVT---YSVDGEQYVTFM  536 (689)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---EEETTEEEEEEE
T ss_pred             cceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceE---EEECCEEEEEEE
Confidence            444566679999999999999998877542 2233  2345654   478999777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 5   NGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQA 64
           +   +         L          G     F+ +G   ++ G  D    ++ +    +A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRA 305

Query: 65  KTAFPGLGSPIRYVDVTYDGRWIL-GTTDTYLIL 97
                G  + +  + VT DG  +  G+ D++L +
Sbjct: 306 GV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.46
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.36
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.35
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.34
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.34
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.28
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.27
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.27
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.26
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.23
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.21
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.19
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.19
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.16
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.13
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.12
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.11
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.09
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.02
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	98.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.76
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.74
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.68
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.63
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.48
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.47
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.46
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.45
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.44
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	98.39
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.34
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.33
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.18
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.18
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.18
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.11
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.96
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.61
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.31
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.3
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.12
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.62
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.03
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.95
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	92.45
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	91.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	91.77
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	91.43
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	90.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	90.6
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	90.32
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	89.14
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	88.59
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	87.67
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	84.48
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	84.26
d1q47a_	495	Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]	80.29

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=3e-13  Score=117.34  Aligned_cols=129  Identities=15%  Similarity=0.141  Sum_probs=86.9

Q ss_pred             CCCceeEEEecCCCcEEEeCCCCcEEEEeccccccce-----ecCCCCCCCeeEEEeCCCCCEEEEeCC-c---ceEEEE
Q 044877           29 RGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAK-----TAFPGLGSPIRYVDVTYDGRWILGTTD-T---YLILIC   99 (244)
Q Consensus        29 ~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aK-----t~lpglGdPI~~vdvS~DG~~lLaT~~-~---~L~L~d   99 (244)
                      .....+|++++|+|.||+||.||.||+||..+.+..+     ..+.+|.+||.+|++||||++|++.+. +   .|+|||
T Consensus       183 ~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd  262 (393)
T d1sq9a_         183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  262 (393)
T ss_dssp             SCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecc
Confidence            3344789999999999999999999999997655332     245678999999999999999998874 3   389999


Q ss_pred             eeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          100 TLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       100 t~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      ..-    ++    ....+..........      ..+.||.-.-+...|+  +   .++.++++|.+..|.+||+++
T Consensus       263 ~~~----g~----~~~~l~~~~~~~~~~------~~~~gH~~~V~~l~fs--p---d~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         263 TEF----GE----RIGSLSVPTHSSQAS------LGEFAHSSWVMSLSFN--D---SGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             TTT----CC----EEEEECBC--------------CCBSBSSCEEEEEEC--S---SSSEEEEEETTSEEEEEETTT
T ss_pred             ccc----ce----eeeeeccccccccce------eeeecccCceeeeccC--C---CCCeeEEECCCCEEEEEECCC
Confidence            742    11    001111000001111      1345665555666787  2   257899999999999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=2.8e-12  Score=110.29  Aligned_cols=120  Identities=14%  Similarity=0.173  Sum_probs=87.9

Q ss_pred             ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .|.. .+++|+|++|+|. ||+|+.||.|++||..+.+  +.+ .|.+|..||.+|+++|||++|++.+ +..|+|||..
T Consensus         4 ~~~~-~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~-~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           4 SFLV-EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             ESCS-SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCC-CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEE-EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            3444 6799999999997 8999999999999986543  233 4678999999999999999998665 5789999974


Q ss_pred             eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                      -.                   ..+...      .+.++.-..+...|+  +   .++..++++.++.+.+|++..-
T Consensus        82 ~~-------------------~~~~~~------~~~~~~~~v~~i~~~--p---~~~~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          82 GR-------------------TWKPTL------VILRINRAARCVRWA--P---NEKKFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             TT-------------------EEEEEE------ECCCCSSCEEEEEEC--T---TSSEEEEEETTSSEEEEEEETT
T ss_pred             cc-------------------cccccc------ccccccccccccccc--c---ccccceeecccCcceeeeeecc
Confidence            10                   011111      123344445566676  2   2578888899999999988754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=1.2e-11  Score=100.97  Aligned_cols=71  Identities=14%  Similarity=0.144  Sum_probs=63.2

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL  101 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~  101 (244)
                      ...+|++++|+|. ||+||.||.||+||..+++..+++..++..+|++|+++|||+.+.+..+..+++|+..
T Consensus        13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2          13 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            4589999999998 9999999999999998887777655678999999999999998888889999999964

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.34  E-value=1.2e-11  Score=105.17  Aligned_cols=120  Identities=14%  Similarity=0.155  Sum_probs=89.5

Q ss_pred             CCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           30 GTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        30 ~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      ...+++++++|+|.  ||+|+.||.|++||..+.+... .+.++..+|.+|.++|||++|++++ +..|+|||..-.   
T Consensus       146 ~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~-~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~---  221 (311)
T d1nr0a1         146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG---  221 (311)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---
T ss_pred             ccccccccccccceeeeccccccccccccccccccccc-ccccccccccccccCccccccccccccccccccccccc---
Confidence            34689999999886  8899999999999998876554 5677899999999999999999777 588999996320   


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                                       .+.-.+.+......||.-..+...|+  +   .+..++++|.++.|.+||++
T Consensus       222 -----------------~~~~~~~~~~~~~~~h~~~V~~~~~s--~---~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         222 -----------------TKTGVFEDDSLKNVAHSGSVFGLTWS--P---DGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             -----------------CEEEECBCTTSSSCSSSSCEEEEEEC--T---TSSEEEEEETTSEEEEEETT
T ss_pred             -----------------cccccccccccccccccccccccccC--C---CCCEEEEEeCCCeEEEEECC
Confidence                             01112222233345555555666776  2   24678888889999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=9.1e-12  Score=100.98  Aligned_cols=112  Identities=20%  Similarity=0.215  Sum_probs=84.0

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceec-CCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTA-FPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKN  106 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~-lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~  106 (244)
                      ....+|++++|+|. ||+|+.||.|++||........+. .+....+|++++++|||++|++++. ..|++||..-    
T Consensus       226 ~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~----  301 (340)
T d1tbga_         226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK----  301 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT----
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC----
Confidence            45689999999997 999999999999999766544432 4567789999999999999998874 7799999631    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                                       ..++.      .+.||.-.-+...|+  +   .+..++++|.+..|.+||
T Consensus       302 -----------------~~~~~------~~~~H~~~V~~l~~s--~---d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         302 -----------------ADRAG------VLAGHDNRVSCLGVT--D---DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----------------CCEEE------EECCCSSCEEEEEEC--T---TSSCEEEEETTSCEEEEC
T ss_pred             -----------------CcEEE------EEcCCCCCEEEEEEe--C---CCCEEEEEccCCEEEEeC
Confidence                             12232      233444334455665  2   256788899999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.9e-11  Score=101.10  Aligned_cols=119  Identities=11%  Similarity=0.152  Sum_probs=79.4

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccce----ecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAK----TAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aK----t~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      ..-....+|++++++|. ||+|+ ||.||+||.......+    ....++.++|.+|+++|||++|++++ +..|+|||.
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~  126 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccc
Confidence            33356789999999998 99998 8999999986433221    12346778999999999999998776 578999996


Q ss_pred             eeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      .-                   ..++.+.      .+.++........|+  +   .+..+++++.+..+.+|++..
T Consensus       127 ~~-------------------~~~~~~~------~~~~~~~~v~~~~~~--~---~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_         127 AA-------------------PTPRIKA------ELTSSAPACYALAIS--P---DSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CC-------------------C--EEEE------EEECSSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTT
T ss_pred             cc-------------------ccccccc------ccccccccccccccc--c---ccccccccccccccccccccc
Confidence            32                   1222222      122222222333444  2   246667777778888888754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.27  E-value=2.8e-11  Score=102.94  Aligned_cols=124  Identities=11%  Similarity=0.220  Sum_probs=88.0

Q ss_pred             cccccCC-CCceeEEEecCCCc-EEEeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeCC---cceE
Q 044877           23 QGHQFSR-GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTTD---TYLI   96 (244)
Q Consensus        23 ~~k~Y~~-~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~~---~~L~   96 (244)
                      ..+.|.. ....+|++++|+|. ||+|+.||.||+||..+... .+..++++..+|.+|+++|||++|++.+.   ..+.
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  129 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccc
Confidence            3444543 46799999999998 99999999999999976543 34557889999999999999999987763   4578


Q ss_pred             EEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877           97 LICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus        97 L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      +|+....                     ..++      .+.++....+...|+  + . ....+++++.+..+.+||++.
T Consensus       130 v~~~~~~---------------------~~~~------~l~~h~~~v~~v~~~--~-~-~~~~l~sgs~d~~i~i~d~~~  178 (311)
T d1nr0a1         130 VFLFDTG---------------------TSNG------NLTGQARAMNSVDFK--P-S-RPFRIISGSDDNTVAIFEGPP  178 (311)
T ss_dssp             EEETTTC---------------------CBCB------CCCCCSSCEEEEEEC--S-S-SSCEEEEEETTSCEEEEETTT
T ss_pred             ccccccc---------------------cccc------ccccccccccccccc--c-c-ceeeecccccccccccccccc
Confidence            8885310                     0111      233444445566776  2 1 123466677889999999885


Q ss_pred             h
Q 044877          177 V  177 (244)
Q Consensus       177 V  177 (244)
                      -
T Consensus       179 ~  179 (311)
T d1nr0a1         179 F  179 (311)
T ss_dssp             B
T ss_pred             c
Confidence            3

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=1.9e-11  Score=102.41  Aligned_cols=116  Identities=17%  Similarity=0.262  Sum_probs=79.0

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccc-----------eecCCCCCCCeeEEEeCCCCCEEEEeCC-cceE
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQA-----------KTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLI   96 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~a-----------Kt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~   96 (244)
                      ...+++++++++|. ||+|+.||.|++||..+.+..           ......+..+|++++++|||++|++.+. ..|+
T Consensus       254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~  333 (388)
T d1erja_         254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  333 (388)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence            34689999999997 999999999999998643311           1123456789999999999999998874 7799


Q ss_pred             EEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeee------eeeeecCCCCcceEEEEeeCCeEE
Q 044877           97 LICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA------QFSWVTENGKQERHLVATVGKFSV  170 (244)
Q Consensus        97 L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a------kFn~~tg~~~~E~~IvtStG~fvv  170 (244)
                      +||..-                     .+.++      .+.||.-.-+..      .|+  +   .+..++++|.+..|.
T Consensus       334 vwd~~~---------------------~~~~~------~l~~H~~~V~~~~~~~~~~~s--p---d~~~l~s~s~Dg~I~  381 (388)
T d1erja_         334 FWDKKS---------------------GNPLL------MLQGHRNSVISVAVANGSSLG--P---EYNVFATGSGDCKAR  381 (388)
T ss_dssp             EEETTT---------------------CCEEE------EEECCSSCEEEEEECSSCTTC--T---TCEEEEEEETTSEEE
T ss_pred             EEECCC---------------------CcEEE------EEeCCCCCEEEEEEecCcccC--C---CCCEEEEEeCCCEEE
Confidence            999631                     11222      222332222222      233  1   256777788899999


Q ss_pred             EEechhh
Q 044877          171 IWNFQQV  177 (244)
Q Consensus       171 vWn~~kV  177 (244)
                      +|+++|+
T Consensus       382 iW~~~k~  388 (388)
T d1erja_         382 IWKYKKI  388 (388)
T ss_dssp             EEEEEEC
T ss_pred             EEeeeeC
Confidence            9999875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=4.4e-11  Score=100.15  Aligned_cols=115  Identities=14%  Similarity=0.252  Sum_probs=80.7

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-----------------cCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-----------------AFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-----------------~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      ...++|++++++|. ||+|+ ||.||+||..+++...+                 ..+++..+|.+|+++|||++|++.+
T Consensus        62 ~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            35689999999998 88887 99999999875543221                 2345677899999999999998777


Q ss_pred             -CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEE
Q 044877           92 -DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSV  170 (244)
Q Consensus        92 -~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvv  170 (244)
                       +..|++||...                     .+.+.      ...++...-+...|+  .   .....++++.+..+.
T Consensus       141 ~dg~v~i~~~~~---------------------~~~~~------~~~~h~~~v~~~~~~--~---~~~~~~~~~~~~~i~  188 (388)
T d1erja_         141 EDRLIRIWDIEN---------------------RKIVM------ILQGHEQDIYSLDYF--P---SGDKLVSGSGDRTVR  188 (388)
T ss_dssp             TTSCEEEEETTT---------------------TEEEE------EECCCSSCEEEEEEC--T---TSSEEEEEETTSEEE
T ss_pred             cccccccccccc---------------------ccccc------ccccccccccccccc--c---ccccccccccceeee
Confidence             47799999631                     12222      123333333344554  2   257888999999999


Q ss_pred             EEechhh
Q 044877          171 IWNFQQV  177 (244)
Q Consensus       171 vWn~~kV  177 (244)
                      +||++..
T Consensus       189 ~~d~~~~  195 (388)
T d1erja_         189 IWDLRTG  195 (388)
T ss_dssp             EEETTTT
T ss_pred             eeecccc
Confidence            9998754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=9e-11  Score=92.78  Aligned_cols=113  Identities=12%  Similarity=0.153  Sum_probs=84.1

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT  108 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~  108 (244)
                      ...+|++++|+|. ||+||.||.||+||..+++..+ .+.++.++|.+++++|+|.++++.+. ..+.+|+....     
T Consensus        18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   91 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-----   91 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-----
T ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE-EEeCCCCcEEEEeeeccccccccccccccccccccccc-----
Confidence            4689999999988 9999999999999998877666 46889999999999999999987775 55777774310     


Q ss_pred             cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                      ....      .+.++........|+  .   .++.+++++.+..+.+||++.
T Consensus        92 ----------------~~~~------~~~~~~~~~~~~~~~--~---~~~~~~~~~~d~~~~~~~~~~  132 (317)
T d1vyhc1          92 ----------------ECIR------TMHGHDHNVSSVSIM--P---NGDHIVSASRDKTIKMWEVQT  132 (317)
T ss_dssp             ----------------CEEE------CCCCCSSCEEEEEEC--S---SSSEEEEEETTSEEEEEETTT
T ss_pred             ----------------cccc------ccccccccceeeecc--C---CCceEEeeccCcceeEeeccc
Confidence                            0111      122333333444555  2   257788899999999999863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=5.7e-11  Score=96.83  Aligned_cols=120  Identities=17%  Similarity=0.245  Sum_probs=86.1

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCC
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKN  106 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~  106 (244)
                      ...+.++++++++|. |++|+.||.|++||..+.+..+.....+..+|++++++|||++|++++. .+|++||..-    
T Consensus       135 ~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~----  210 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN----  210 (299)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG----
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            345678999999988 8999999999999987655444344567899999999999999997774 7799999631    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV  177 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV  177 (244)
                           ++.         ...+.      .+.++....+...|+  +   .+..+++++.+..+.+||++.-
T Consensus       211 -----~~~---------~~~~~------~~~~h~~~v~~l~~s--~---~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         211 -----NFE---------LAHTN------SWTFHTAKVACVSWS--P---DNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             -----TTE---------ESCCC------CCCCCSSCEEEEEEC--T---TSSEEEEEETTSCEEEEETTCT
T ss_pred             -----ccc---------ccccc------ccccccccccccccc--c---cccceEEEcCCCEEEEEECCCC
Confidence                 111         00111      122333344555665  2   2577888899999999998753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=2.3e-10  Score=92.87  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=84.1

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC----------CEEEEeC-CcceE
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG----------RWILGTT-DTYLI   96 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG----------~~lLaT~-~~~L~   96 (244)
                      ...+.++++++++|. ||+|+.||.|++||..........+.++..+|.+|+++|++          .+|++.+ +..|+
T Consensus       161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence            345689999999997 99999999999999987665555678899999999998754          5777666 57899


Q ss_pred             EEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877           97 LICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus        97 L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                      +||..-                   | .++++      .+.||...-+...|+  .    ..+.++++.+..+.+||+
T Consensus       241 iw~~~~-------------------~-~~~~~------~~~~h~~~V~~v~~~--~----~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         241 IYSVKR-------------------P-MKIIK------ALNAHKDGVNNLLWE--T----PSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEESSC-------------------T-TCCEE------ETTSSTTCEEEEEEE--E----TTEEEEEETTSCEEEEEE
T ss_pred             EEECCC-------------------C-CeEEE------EeCCCCCCeEEEEEC--C----CCEEEEEECCCeEEEEEE
Confidence            999631                   1 12233      233444334455665  2    246899999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-10  Score=97.70  Aligned_cols=113  Identities=13%  Similarity=0.191  Sum_probs=81.7

Q ss_pred             cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877           27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      +.-..+.++++++++|. +++|+.||.|++||..+....  ....+.++|++|+++|||++|++++ ++.|+|||+.-  
T Consensus       221 ~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~--  296 (337)
T d1gxra_         221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--  296 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--
T ss_pred             cccccceEEEEEcccccccceeccccccccccccccccc--cccccccccceEEECCCCCEEEEEeCCCeEEEEECCC--
Confidence            44456789999999987 899999999999999765433  3456889999999999999999877 47799999631  


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                        +                 +.+..       .++.-.-+...|+  +   .++.++++|.++.+.+||+
T Consensus       297 --~-----------------~~~~~-------~~~~~~v~~~~~s--~---d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         297 --G-----------------ASIFQ-------SKESSSVLSCDIS--V---DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --C-----------------CEEEE-------EECSSCEEEEEEC--T---TSCEEEEEETTSCEEEEEE
T ss_pred             --C-----------------CEEEE-------ccCCCCEEEEEEe--C---CCCEEEEEeCCCeEEEEEE
Confidence              1                 11210       1111112334555  2   2467777888899999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.16  E-value=6.1e-10  Score=95.38  Aligned_cols=133  Identities=12%  Similarity=0.095  Sum_probs=91.1

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEecccccc---ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ---AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD  104 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~---aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~  104 (244)
                      ...++|++++|+|. +++|+.||.|++|+....+.   ....+.++..+|++++++|||++|++++ +.+|++||.....
T Consensus        95 ~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~  174 (371)
T d1k8kc_          95 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE  174 (371)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred             cccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCc
Confidence            45699999999998 99999999999998754332   2344567899999999999999998665 6889999986533


Q ss_pred             CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                      ...  ...+. ..+.+.+....+.      ...++....+...|+  +   .++.+++++.+..+.+||++.
T Consensus       175 ~~~--~~~~~-~~~~~~~~~~~~~------~~~~~~~~v~~~~~s--~---~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         175 VEE--RPAPT-PWGSKMPFGELMF------ESSSSCGWVHGVCFS--A---NGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             TSC--CCCCB-TTBSCCCTTCEEE------ECCCCSSCEEEEEEC--S---SSSEEEEEETTTEEEEEEGGG
T ss_pred             ccc--ccccc-cccccccceeeee------eccCccCcEEEEEee--c---ccccccccccCCcceEEeeec
Confidence            111  11011 0111222222222      233444445566776  2   257889999999999999865

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=3.7e-10  Score=90.91  Aligned_cols=66  Identities=17%  Similarity=0.257  Sum_probs=54.1

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CCcceEEEEee
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TDTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~~L~L~dt~  101 (244)
                      .+|++.+++ .||+||.||.||+||..+++..+ .|.+|.++|.+|+++||+ +|++. .+..|++|+..
T Consensus        16 itc~~~~~~-~l~tgs~Dg~i~vWd~~~~~~~~-~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2          16 ITCLQFEDN-YVITGADDKMIRVYDSINKKFLL-QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEEEETT-EEEEEETTTEEEEEETTTTEEEE-EEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETT
T ss_pred             EEEEEECCC-EEEEEeCCCeEEEEECCCCcEEE-EEECCCCCEEEEEEcCCC-EEEEEeccccccccccc
Confidence            688887643 69999999999999998877666 478999999999999976 45544 46889999963

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2e-10  Score=91.40  Aligned_cols=70  Identities=10%  Similarity=0.110  Sum_probs=54.0

Q ss_pred             ceeEEEecCCCc-EEEeCCCCcEEEEecccccccee--cCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEee
Q 044877           32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT--AFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICTL  101 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt--~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt~  101 (244)
                      -+++++++|+|. ||+||.||.||+||.........  ...++..||++|+++|++..+|++ + +..|++|+..
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            489999999987 99999999999999854332111  123689999999999987655544 3 5789999964

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=3.1e-10  Score=89.60  Aligned_cols=98  Identities=18%  Similarity=0.234  Sum_probs=73.8

Q ss_pred             cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCC
Q 044877           43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKI  121 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~k  121 (244)
                      .+++|+.||.|++||..+.+..+ .+.++..+|++++++|||++|++.+ +..|+|||..-                   
T Consensus       219 ~~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------  278 (317)
T d1vyhc1         219 FLLSGSRDKTIKMWDVSTGMCLM-TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-------------------  278 (317)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT-------------------
T ss_pred             eeEeccCCCEEEEEECCCCcEEE-EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC-------------------
Confidence            38999999999999998876555 4678999999999999999999776 57899999631                   


Q ss_pred             CcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          122 AAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       122 p~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                        .+.++      .+.+|.-.-+...|+  +   .++.++++|.+..+.+|+
T Consensus       279 --~~~~~------~~~~h~~~V~~~~~s--~---~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         279 --KRCMK------TLNAHEHFVTSLDFH--K---TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             --SCCCE------EEECCSSCEEEEEEC--S---SSSCEEEEETTSEEEEEC
T ss_pred             --CcEEE------EEcCCCCCEEEEEEc--C---CCCEEEEEeCCCeEEEeC
Confidence              11222      233343333455666  2   257889999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.09  E-value=8.7e-10  Score=89.04  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=83.9

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN  106 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~  106 (244)
                      ......+....+.+. +++|+.||.|++||....+... .+.++..+|++|+++|||++|++.+ +..|++||...    
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~-~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~----  257 (340)
T d1tbga_         183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA----  257 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----
T ss_pred             cceeEeeeccccccceeEEeecCceEEEEECCCCcEEE-EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc----
Confidence            344467777777766 8999999999999998776555 4688999999999999999998777 57799999631    


Q ss_pred             CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                       +..+...    ....+....+...|+  +   .+..+++++.+..|.+||+.+
T Consensus       258 -----------------~~~~~~~----~~~~~~~~i~~~~~s--~---~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         258 -----------------DQELMTY----SHDNIICGITSVSFS--K---SGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             -----------------TEEEEEE----CCTTCCSCEEEEEEC--S---SSCEEEEEETTSCEEEEETTT
T ss_pred             -----------------ccccccc----ccccccCceEEEEEC--C---CCCEEEEEECCCEEEEEECCC
Confidence                             1111100    011122334455665  2   257888899999999999763

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=8.4e-10  Score=93.25  Aligned_cols=113  Identities=11%  Similarity=0.048  Sum_probs=80.2

Q ss_pred             CCceeEEEecCC-Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeC---CCCCEEEEeC-CcceEEEEeeec
Q 044877           30 GTNFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT---YDGRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        30 ~~~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS---~DG~~lLaT~-~~~L~L~dt~~~  103 (244)
                      ....+|++++|+ |. ||+|+.||.|++||..+++..+ .|.++..||.++.++   +||++|++.+ +.+|+|||..- 
T Consensus       205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~-  282 (325)
T d1pgua1         205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT-  282 (325)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE-ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT-
T ss_pred             CCccEEeeeccccceeccccccccceeeeeeccccccc-cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC-
Confidence            344799999996 45 8999999999999998877666 578888899887776   8999998776 68899999631 


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCC--ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGV--NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF  174 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~--~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~  174 (244)
                                          ...++      .+.++  ...=....|.|..    +..++++|.+..+.+||+
T Consensus       283 --------------------~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 --------------------SKCVQ------KWTLDKQQLGNQQVGVVATG----NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             --------------------TEEEE------EEECCTTCGGGCEEEEEEEE----TTEEEEEETTSCEEEEET
T ss_pred             --------------------CCEEE------EEEecCCcccCeEEEEEECC----CCEEEEEECCCEEEEEEC
Confidence                                11222      12211  1111122455532    357888899999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.2e-09  Score=82.95  Aligned_cols=64  Identities=20%  Similarity=0.359  Sum_probs=53.1

Q ss_pred             eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ++|++.  +|. ||+||.||.|||||..+++..+ .|++|.++|++|++  |+++|++.+ +..|++|+..
T Consensus        18 V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~-~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          18 VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE-EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE-EEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            678765  555 9999999999999998887666 47899999988765  889998776 5779999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=5.5e-09  Score=88.12  Aligned_cols=118  Identities=12%  Similarity=0.186  Sum_probs=79.3

Q ss_pred             CCceeEEEecCCCc--EEEeCCCCcEEEEecccccccee--cCCCCCCCeeEEEeCCC-CCEEEEeC-CcceEEEEeeec
Q 044877           30 GTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKT--AFPGLGSPIRYVDVTYD-GRWILGTT-DTYLILICTLFT  103 (244)
Q Consensus        30 ~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt--~lpglGdPI~~vdvS~D-G~~lLaT~-~~~L~L~dt~~~  103 (244)
                      ....+++++++++.  +++|+.||.|++||....+...+  .+.++..+|.+|+++|| |++|++.+ +..|+|||... 
T Consensus       159 ~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-  237 (325)
T d1pgua1         159 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-  237 (325)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-
T ss_pred             ccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-
Confidence            34589999999875  78899999999999876553332  24567889999999998 57777555 57799999631 


Q ss_pred             cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                          .+.++      .+.++....+...|+..--+  ++.++++|.+..+.+||++.
T Consensus       238 --------------------~~~~~------~l~~~~~~v~~~~~s~~~~d--g~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         238 --------------------GEFLK------YIEDDQEPVQGGIFALSWLD--SQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             --------------------CCEEE------ECCBTTBCCCSCEEEEEESS--SSEEEEEETTSEEEEEETTT
T ss_pred             --------------------ccccc------cccccccccccceeeeeccC--CCEEEEEeCCCeEEEEECCC
Confidence                                11122      11222211222233321112  57899999999999999863

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.3e-09  Score=94.08  Aligned_cols=71  Identities=13%  Similarity=0.082  Sum_probs=59.2

Q ss_pred             CCceeEEEecCCCc-EEEeCCCC---cEEEEeccccccceec------------CCCCCCCeeEEEeCCCCCEEEEeC-C
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDG---KIRLYSSNSMRQAKTA------------FPGLGSPIRYVDVTYDGRWILGTT-D   92 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG---~IRLyD~~~~r~aKt~------------lpglGdPI~~vdvS~DG~~lLaT~-~   92 (244)
                      ...+.|++++|+|. ||+||.|+   .|||||..+++...++            +.||.++|++|+++|||++|++++ +
T Consensus       231 ~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D  310 (393)
T d1sq9a_         231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  310 (393)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             cceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence            35689999999998 99999987   4999999765544432            247889999999999999999887 5


Q ss_pred             cceEEEEe
Q 044877           93 TYLILICT  100 (244)
Q Consensus        93 ~~L~L~dt  100 (244)
                      .+|+|||.
T Consensus       311 ~~v~vWd~  318 (393)
T d1sq9a_         311 GKLRFWDV  318 (393)
T ss_dssp             SEEEEEET
T ss_pred             CEEEEEEC
Confidence            78999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=5.5e-09  Score=84.51  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=53.2

Q ss_pred             eeEEEecCCCc-EEEeCCCC-cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           33 FQCFASTGDGS-IVVGSLDG-KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~-IavGS~dG-~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ..+.+.++++. +++|+.+| .||+||....+........+..+|++|+++|||++|++.+ +..|+|||..
T Consensus       121 ~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  192 (287)
T d1pgua2         121 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ  192 (287)
T ss_dssp             SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeec
Confidence            34556666655 77777775 7999998766555555566888999999999999999776 5779999973

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8e-08  Score=76.50  Aligned_cols=65  Identities=18%  Similarity=0.300  Sum_probs=52.0

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .+|++.+++ .||+||.||.||+||..+++..+ .|.++..+|.+++++++  +|++.+ +..+++|+..
T Consensus        20 ~s~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~-~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2          20 ITCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             EEEEEEETT-EEEEEETTSCEEEEETTTCCEEE-ECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             EEEEEECCC-EEEEEeCCCeEEEEECCCCCEEE-EEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence            566665433 49999999999999998887666 47889999999999986  666555 5889999964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.3e-08  Score=77.12  Aligned_cols=108  Identities=13%  Similarity=0.187  Sum_probs=70.9

Q ss_pred             eEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877           34 QCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        34 t~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~  111 (244)
                      .+.+.+.+|. |++|+.||.||+||....+..+ .+.++..+|.+++++  +++|++.+ +..|++||....        
T Consensus       179 ~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~--------  247 (342)
T d2ovrb2         179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG--------  247 (342)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEETTTCCEEE-EECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------
T ss_pred             ccccccCCCCEEEEEeCCCeEEEeecccceeee-EecccccceeEEecC--CCEEEEEcCCCEEEEEecccc--------
Confidence            3444555565 9999999999999998776555 467788888877665  56887766 578999996310        


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ  175 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~  175 (244)
                                ...+.+.-      ...+..  ....+.+.     .+.++++|.+..+.+||++
T Consensus       248 ----------~~~~~~~~------~~~~~~--~~~~~~~~-----~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         248 ----------QCLQTLQG------PNKHQS--AVTCLQFN-----KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             ----------CEEEEECS------TTSCSS--CEEEEEEC-----SSEEEEEETTSEEEEEETT
T ss_pred             ----------cccccccc------cceeee--ceeecccC-----CCeeEEEcCCCEEEEEECC
Confidence                      01122221      111111  11223321     4688899999999999986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=9.8e-08  Score=74.26  Aligned_cols=112  Identities=18%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877           33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT  111 (244)
Q Consensus        33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~  111 (244)
                      ..++..++. .+++|+.||.||+||..+.+..+ .++++..+|..  +++|+.+|++.+ +..|+|||..-....     
T Consensus       181 v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~-----  251 (293)
T d1p22a2         181 IACLQYRDR-LVVSGSSDNTIRLWDIECGACLR-VLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDP-----  251 (293)
T ss_dssp             EEEEEEETT-EEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTST-----
T ss_pred             cccccCCCC-eEEEecCCCEEEEEecccceeee-eecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccc-----
Confidence            445555543 59999999999999998776555 45777778764  678899998777 578999996421100     


Q ss_pred             ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877          112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN  173 (244)
Q Consensus       112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn  173 (244)
                             ...+....++      .+.+|.-.-+...|+       +..++++|.+..|.+||
T Consensus       252 -------~~~~~~~~~~------~~~~H~~~V~~v~~d-------~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         252 -------RAPAGTLCLR------TLVEHSGRVFRLQFD-------EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -------TSCTTTTEEE------EECCCSSCCCCEEEC-------SSCEEECCSSSEEEEEC
T ss_pred             -------cccCCceeeE------EecCCCCCEEEEEEc-------CCEEEEEecCCEEEEeC
Confidence                   0011122333      233443222333443       35788899999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=8.9e-08  Score=78.03  Aligned_cols=104  Identities=14%  Similarity=0.032  Sum_probs=70.0

Q ss_pred             EEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C--cceEEEEeeeccCCCCcc
Q 044877           36 FASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D--TYLILICTLFTDKNGTTK  110 (244)
Q Consensus        36 vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~--~~L~L~dt~~~~~~~~~~  110 (244)
                      --+|| +|. ||+++ +|.|++||..+++..+  + +++..|.++.+||||++|+.++ +  ..|.+||..-    +   
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~--~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~----~---   76 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT----G---   76 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT----C---
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEEE--c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC----C---
Confidence            34688 898 66654 6999999998765333  3 5899999999999999998766 3  3599999631    1   


Q ss_pred             cccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877          111 TGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ  176 (244)
Q Consensus       111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k  176 (244)
                                  ..+++.         ++.-.-....|+  +   .+..+++++.+.-+++|++..
T Consensus        77 ------------~~~~~~---------~~~~~v~~~~~s--p---dg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          77 ------------KAEKFE---------ENLGNVFAMGVD--R---NGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             ------------CEEECC---------CCCCSEEEEEEC--T---TSSEEEEEETTSEEEEEETTT
T ss_pred             ------------cEEEee---------CCCceEEeeeec--c---cccccceeccccccccccccc
Confidence                        112221         222222233454  2   256788888888888888865

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.48  E-value=1.3e-06  Score=71.00  Aligned_cols=70  Identities=11%  Similarity=0.165  Sum_probs=56.3

Q ss_pred             CCCceeEEEecCCCc-EEEeCCCC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877           29 RGTNFQCFASTGDGS-IVVGSLDG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT  100 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavGS~dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt  100 (244)
                      .....++++++|+|. |++++.++  .|++||..+++ .+ .+.++..+|.++++||||++|++.+. ..+++|+.
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EE-EeeCCCceEEeeeecccccccceeccccccccccc
Confidence            345689999999997 76655543  69999998765 44 35568889999999999999997775 66999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=7.4e-07  Score=71.10  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=53.3

Q ss_pred             EEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           36 FASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        36 vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      .+..++|. +++|+.|+.|++||..+.+... .+.+...++.++.+++++.++++.+ +..|++||..
T Consensus       165 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY-ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             cccccccceeeeecccceeeeeeccccccee-eeeccccccccccccccceeeecccccceEEeeecc
Confidence            34445555 8999999999999998776555 4577889999999999999999777 4779999963

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.46  E-value=5.6e-07  Score=72.50  Aligned_cols=65  Identities=12%  Similarity=-0.062  Sum_probs=52.6

Q ss_pred             EEecCCCc-EEEeCCCCcEEEEeccccccceec-CCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEee
Q 044877           36 FASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTA-FPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICTL  101 (244)
Q Consensus        36 vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~-lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt~  101 (244)
                      .|.+++|+ +|+|+.++.|.+||..+++..++. +| .+.-+.+|++||||++++++ + .+.|.+||..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~-~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC-CCCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence            36788887 999999999999999988766654 34 55667899999999998755 4 4779999963

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.45  E-value=2.1e-07  Score=81.27  Aligned_cols=72  Identities=14%  Similarity=0.121  Sum_probs=54.8

Q ss_pred             CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceec-C---CCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTA-F---PGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~-l---pglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      +....++++||+|. +++++.||.||+||..+.+...+. +   .++...+.++.+||||++|++++  +..+++||..
T Consensus        61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2          61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC
Confidence            34467899999998 899999999999999776533221 1   23344566778889999998776  4789999964

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.44  E-value=7.8e-07  Score=77.54  Aligned_cols=56  Identities=21%  Similarity=0.261  Sum_probs=48.1

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      +|+.+.||.|++||..+++..++ |+ .|+.+.+|++||||++|++++ +.+|++||..
T Consensus        35 ~V~~~~dg~v~vwD~~t~~~~~~-l~-~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~   91 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSKKIVKV-ID-TGYAVHISRMSASGRYLLVIGRDARIDMIDLW   91 (426)
T ss_dssp             EEEETTTTEEEEEETTTCSEEEE-EE-CCSSEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             EEEEcCCCEEEEEECCCCcEEEE-Ee-CCCCeeEEEECCCCCEEEEEeCCCCEEEEEcc
Confidence            58899999999999999877774 67 467789999999999998776 5789999963

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=1.4e-06  Score=68.67  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             CCCceeEEEecCCC-c-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877           29 RGTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK  105 (244)
Q Consensus        29 ~~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~  105 (244)
                      -..+++|+++++++ . |++|+.||.|++||........................+++..+++.+ +.++++||..... 
T Consensus        55 h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~-  133 (342)
T d1yfqa_          55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG-  133 (342)
T ss_dssp             CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT-
T ss_pred             CCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc-
Confidence            35678999999854 3 999999999999999876555544444555556666777888887665 5889999975311 


Q ss_pred             CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877          106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN  179 (244)
Q Consensus       106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~  179 (244)
                                      ........      ..++........+.+..   ..+..++++.+..+.+||+..-..
T Consensus       134 ----------------~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         134 ----------------DGVIAVKN------LNSNNTKVKNKIFTMDT---NSSRLIVGMNNSQVQWFRLPLCED  182 (342)
T ss_dssp             ----------------TBCEEEEE------SCSSSSSSCCCEEEEEE---CSSEEEEEESTTEEEEEESSCCTT
T ss_pred             ----------------cceeeecc------cccccccceeeeeeeec---cCCceeeecCCCcEEEEecccCcc
Confidence                            11111110      11111111111222211   257788999999999999865543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.34  E-value=6.4e-07  Score=79.81  Aligned_cols=74  Identities=9%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             CCCCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCC---CCCCCeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877           28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFP---GLGSPIRYVDVTYDGRWILGTT--DTYLILICT  100 (244)
Q Consensus        28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lp---glGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt  100 (244)
                      ..+.....+++||+|. ||++|.||.|++||..+.+.... .++   ++-..+.++.+||||++|++++  +.+|+|||.
T Consensus        59 ~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~  138 (432)
T d1qksa2          59 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  138 (432)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             eCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeC
Confidence            3444578999999998 99999999999999876543221 233   2223455567789999997766  478999996


Q ss_pred             e
Q 044877          101 L  101 (244)
Q Consensus       101 ~  101 (244)
                      .
T Consensus       139 ~  139 (432)
T d1qksa2         139 E  139 (432)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.33  E-value=2.1e-06  Score=68.07  Aligned_cols=54  Identities=20%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877           45 VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICT  100 (244)
Q Consensus        45 avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt  100 (244)
                      |+++.+|.|++||..+++..++ ++ +|+...+|++||||++|++++  .+.|.+||.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~-i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~   61 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTAT-IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE-EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             EEECCCCEEEEEECCCCeEEEE-EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            5688999999999988876664 55 677789999999999997554  367999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.18  E-value=2.9e-06  Score=75.41  Aligned_cols=55  Identities=16%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT  100 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt  100 (244)
                      +++-|.+|.|+|||..+++..++ ++ .|..+.+|.+||||++|.+++ +.+|.+||.
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~-~~-~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~   90 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTV-LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDL   90 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEE-EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             EEEEcCCCEEEEEECCCCcEEEE-Ee-CCCCeeEEEECCCCCEEEEEcCCCCEEEEEe
Confidence            58999999999999999887764 56 567899999999999998766 588999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.18  E-value=1.3e-06  Score=70.13  Aligned_cols=58  Identities=19%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             cEEEeCCCCcEEEEeccccccceec-CCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEe
Q 044877           43 SIVVGSLDGKIRLYSSNSMRQAKTA-FPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICT  100 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r~aKt~-lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt  100 (244)
                      ++++++.||.|++||..+.+..++. ++..|..+.+|++||||++|+++ + +..|.+||.
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~   63 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL   63 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEEC
Confidence            5899999999999999887766532 34567778999999999998654 4 477999996

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=1e-05  Score=65.07  Aligned_cols=75  Identities=11%  Similarity=0.028  Sum_probs=55.1

Q ss_pred             cCCCCceeEEEecCCCc-E-EEeCCCCcEEEEeccccccceec--CCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877           27 FSRGTNFQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTA--FPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT  100 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~--lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt  100 (244)
                      .......++++++|+|. + ++++.||.|++|+........+.  ...++..+.+|++||||++|++++.  ..+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            34556678999999998 6 56667999999997543322221  2346777899999999999998863  55888875


Q ss_pred             e
Q 044877          101 L  101 (244)
Q Consensus       101 ~  101 (244)
                      .
T Consensus       113 ~  113 (333)
T d1ri6a_         113 E  113 (333)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.11  E-value=1.8e-05  Score=62.57  Aligned_cols=70  Identities=24%  Similarity=0.291  Sum_probs=54.9

Q ss_pred             CCCceeEEEecCCCc-E-EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877           29 RGTNFQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT  100 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt  100 (244)
                      .+..-..++++|+|. | ++++.+|.|++||..+.+..++ ++. +..+.++.+++||+++++++.  ..+.+||.
T Consensus        30 ~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-eec-cccccccccccccccccccccccceeeeccc
Confidence            344457899999997 5 6788999999999988776653 564 445689999999999987764  55888885

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.96  E-value=8.9e-06  Score=65.00  Aligned_cols=67  Identities=15%  Similarity=0.053  Sum_probs=52.2

Q ss_pred             ceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           32 NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        32 ~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      ...+.+.++++..+.+. ++.|++||..+.+..++ ++ ++..+.+|++||||++|++++ ++.|++||+.
T Consensus       242 ~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~-~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKR-VP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             CEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEE-EE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             ceEEEEecccceEEEEc-cccEEEEECCCCcEEEE-Ec-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            35667788887744332 69999999988776654 33 678899999999999998877 4779999973

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=1.4e-05  Score=64.21  Aligned_cols=57  Identities=12%  Similarity=0.117  Sum_probs=42.6

Q ss_pred             EEEeCCCCcEEEEeccccccceecC--CCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877           44 IVVGSLDGKIRLYSSNSMRQAKTAF--PGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL  101 (244)
Q Consensus        44 IavGS~dG~IRLyD~~~~r~aKt~l--pglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~  101 (244)
                      .|+++.++.|++||..... +-+.+  -.++..|.+|++||||++|++++  +..|.+|+..
T Consensus         7 ~v~~~~~~~I~v~~~~~~~-~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~   67 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEG-ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA   67 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTS-CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEcCCC-CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence            4778899999999974321 11112  24788999999999999997665  4779999863

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.89  E-value=3.5e-05  Score=63.65  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-E-eC-CcceEEEEeeeccCCCCcccccccccCC
Q 044877           43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-G-TT-DTYLILICTLFTDKNGTTKTGFNGRMGN  119 (244)
Q Consensus        43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-a-T~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~  119 (244)
                      .++++..++.|++||..+++..+ .++ ++.++.++.|||||+++| + ++ ++.|.+||+.-    ++    -.+++..
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~-~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t----g~----~~~~~~~  359 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSS-QIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA----GD----QDQSTVE  359 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEE-Eec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC----CC----EEEEECC
Confidence            35677888899999998887666 344 788999999999999754 3 44 47799999842    11    2334433


Q ss_pred             CCCcceeeeeCcc
Q 044877          120 KIAAPRLLKLTPL  132 (244)
Q Consensus       120 ~kp~pr~L~L~Pe  132 (244)
                      -...|..|.|.+|
T Consensus       360 ~g~~P~~l~~~~~  372 (373)
T d2madh_         360 LGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCCcEEEEecC
Confidence            3356777777665

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.82  E-value=1e-05  Score=64.87  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=50.8

Q ss_pred             eeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877           33 FQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL  101 (244)
Q Consensus        33 Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~  101 (244)
                      +.+++.++++ .++.++ ++.|++||..+++..++ ++ +|.++.+|++||||++|++++ ++.|++||..
T Consensus       254 ~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~-~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         254 YFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKA-AN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             EEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEE-EE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             eEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEE-Ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECc
Confidence            4556666654 476665 46899999988765653 34 678999999999999999877 5779999973

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.61  E-value=0.00025  Score=58.28  Aligned_cols=70  Identities=13%  Similarity=-0.026  Sum_probs=52.5

Q ss_pred             CCCceeEEEecCCCc-EEEe-----CCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-----------
Q 044877           29 RGTNFQCFASTGDGS-IVVG-----SLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-----------   91 (244)
Q Consensus        29 ~~~~Ft~vats~~G~-IavG-----S~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-----------   91 (244)
                      ...+..++|.+|+|. |++.     +..+.|.+||..+++...+ +++...|  ++.+||||++|+++.           
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-EeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            445567888999998 6654     3457899999988876664 6644334  899999999998764           


Q ss_pred             CcceEEEEee
Q 044877           92 DTYLILICTL  101 (244)
Q Consensus        92 ~~~L~L~dt~  101 (244)
                      ++.|.+||+.
T Consensus        96 ~~~v~v~D~~  105 (373)
T d2madh_          96 TDYVEVFDPV  105 (373)
T ss_pred             ceEEEEEECC
Confidence            2569999974

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.54  E-value=0.00012  Score=63.54  Aligned_cols=67  Identities=12%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             ceeEEEecCCCc-EEEe---------CCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           32 NFQCFASTGDGS-IVVG---------SLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~-IavG---------S~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .+.++++||||. ||.+         |.+|++.|||..+++ .+ .+..+.+.+..+.+||||++|+-..++.|.+|+.
T Consensus        63 ~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~-~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~  139 (470)
T d2bgra1          63 SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIE  139 (470)
T ss_dssp             CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-EC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESS
T ss_pred             ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-cc-ccccCCccccccccccCcceeeEeecccceEEEC
Confidence            488999999998 8877         447899999998764 55 4678899999999999999999888888888875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.31  E-value=0.00011  Score=61.84  Aligned_cols=68  Identities=7%  Similarity=0.114  Sum_probs=48.7

Q ss_pred             eEEEecCCCc-EEEe----------CCCCcEEEEecccccccee-cCC-----CCCCCeeEEEeCCCCCEEEEeC--Ccc
Q 044877           34 QCFASTGDGS-IVVG----------SLDGKIRLYSSNSMRQAKT-AFP-----GLGSPIRYVDVTYDGRWILGTT--DTY   94 (244)
Q Consensus        34 t~vats~~G~-IavG----------S~dG~IRLyD~~~~r~aKt-~lp-----glGdPI~~vdvS~DG~~lLaT~--~~~   94 (244)
                      ..++.+++|. |++.          +.|+.|++||..+.+.... -+|     ..|..-.++.+||||++|+.+.  .+.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            4689999998 7774          4588899999977654332 112     1233345799999999998664  478


Q ss_pred             eEEEEee
Q 044877           95 LILICTL  101 (244)
Q Consensus        95 L~L~dt~  101 (244)
                      |.+||+.
T Consensus       148 v~~~d~~  154 (368)
T d1mdah_         148 AAGLSVP  154 (368)
T ss_dssp             EEEEEET
T ss_pred             EEEEECC
Confidence            9999963

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.30  E-value=0.0008  Score=58.23  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=41.1

Q ss_pred             EEEecCCCcEEEeCCCCcEEEEeccccccce----ecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           35 CFASTGDGSIVVGSLDGKIRLYSSNSMRQAK----TAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        35 ~vats~~G~IavGS~dG~IRLyD~~~~r~aK----t~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      .+...++|+++. ..||.|.+||..+++...    +.|.+++..|.++.+||||++||.++
T Consensus        21 ~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~   80 (470)
T d2bgra1          21 SLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEY   80 (470)
T ss_dssp             CCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEE
T ss_pred             CCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEE
Confidence            344556666333 357899999998775322    24566788999999999999999765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.12  E-value=0.00046  Score=55.92  Aligned_cols=65  Identities=14%  Similarity=0.106  Sum_probs=48.0

Q ss_pred             EEEecCCCc-EEEeCCC----------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEE-EEeC--CcceEEEEe
Q 044877           35 CFASTGDGS-IVVGSLD----------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWI-LGTT--DTYLILICT  100 (244)
Q Consensus        35 ~vats~~G~-IavGS~d----------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~l-LaT~--~~~L~L~dt  100 (244)
                      .++.+++|. +++.+.+          +.|++||..+++...+ ++ ++..+.++.+||||+++ ++++  ++.|.+||+
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~-~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-FE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-EE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEE-ec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            477888877 5555544          3699999988765553 44 67789999999999953 4443  478999997


Q ss_pred             e
Q 044877          101 L  101 (244)
Q Consensus       101 ~  101 (244)
                      .
T Consensus       331 ~  331 (355)
T d2bbkh_         331 E  331 (355)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.62  E-value=0.0011  Score=55.52  Aligned_cols=66  Identities=11%  Similarity=0.063  Sum_probs=48.4

Q ss_pred             eEEEecCCCc-EEEeCCC---------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEE-EEeC--CcceEEEEe
Q 044877           34 QCFASTGDGS-IVVGSLD---------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWI-LGTT--DTYLILICT  100 (244)
Q Consensus        34 t~vats~~G~-IavGS~d---------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~l-LaT~--~~~L~L~dt  100 (244)
                      ..++.+++|. +++...+         ..|++||..+++..++ ++ +|..+.++++||||+.+ +++.  ++.|.+||+
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~-~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-IS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC-CE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE-ec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            4678888776 5444322         3599999998876664 44 77899999999999854 3443  477999997


Q ss_pred             e
Q 044877          101 L  101 (244)
Q Consensus       101 ~  101 (244)
                      .
T Consensus       345 ~  345 (368)
T d1mdah_         345 A  345 (368)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.31  E-value=0.003  Score=50.93  Aligned_cols=52  Identities=12%  Similarity=0.173  Sum_probs=42.3

Q ss_pred             ceeEEEecCCCc---EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC
Q 044877           32 NFQCFASTGDGS---IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG   84 (244)
Q Consensus        32 ~Ft~vats~~G~---IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG   84 (244)
                      ...+++++|+|.   +|+++.||.|++||..+++..++ ++++|..-..|.+..+|
T Consensus       301 ~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~-i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         301 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS-VNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE-ECCCCSSCCEEECCCCC
T ss_pred             CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEE-EeCcCCCccEEEeCCCC
Confidence            467999999996   57788999999999999887774 68888877777766655

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.19  E-value=0.0057  Score=55.96  Aligned_cols=114  Identities=12%  Similarity=0.137  Sum_probs=65.4

Q ss_pred             cCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCCCccccccc
Q 044877           39 TGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNGTTKTGFNG  115 (244)
Q Consensus        39 s~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~~~~~GF~~  115 (244)
                      +++|. +++ +.+|.+.+++....+..+ .+|- |.--.+|++||||+|++++-  +.++.+||..--+      ..|+.
T Consensus       226 ~~dGk~~~v-~~~~v~vvd~~~~~~v~~-~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~------~~~~~  296 (441)
T d1qnia2         226 VKAGNFKTI-GDSKVPVVDGRGESEFTR-YIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD------DLFED  296 (441)
T ss_dssp             HHTTCCBCC-TTCCCCEEECSSSCSSEE-EECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH------HHTTT
T ss_pred             ecCCCEEEe-CCCCcEEEEcccCCceEE-EEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhh------hHhhc
Confidence            44555 333 347788888875544344 4674 44448999999999998775  3889999964211      11221


Q ss_pred             ccCCCCCcceeeeeCccchhhcCCccceeee--eeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877          116 RMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA--QFSWVTENGKQERHLVATVGKFSVIWNFQQVK  178 (244)
Q Consensus       116 ~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a--kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~  178 (244)
                          +        |.|++....-.+...-+.  .|+     +.+.-..+.+.++-|+.||+.+-+
T Consensus       297 ----~--------~~~~~~~~~~~~~glgplh~~fd-----~~g~~yts~~~ds~v~kw~~~~~~  344 (441)
T d1qnia2         297 ----K--------IELRDTIVAEPELGLGPLHTTFD-----GRGNAYTTLFIDSQVCKWNIADAI  344 (441)
T ss_dssp             ----S--------SCGGGGEEECCBCCSCEEEEEEC-----SSSEEEEEETTTTEEEEEEHHHHH
T ss_pred             ----c--------CCcceEEEeecccccCcccceec-----CCceEEEcccccceEEEeccchhh
Confidence                1        223222111111112222  354     224555556677999999998655

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.05  E-value=0.043  Score=44.98  Aligned_cols=72  Identities=17%  Similarity=0.225  Sum_probs=52.3

Q ss_pred             cCCCCceeEEEecCCCcE-EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877           27 FSRGTNFQCFASTGDGSI-VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL  101 (244)
Q Consensus        27 Y~~~~~Ft~vats~~G~I-avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~  101 (244)
                      |-.+.-...+|.+++|.| ++...+|.|+.||..+.  .. .+..+...+.+|++++||+.+++... ..|..|+..
T Consensus        24 ~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          24 FPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             ECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            333334568999999994 56677999999997443  22 34456678899999999998877754 667777654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.03  E-value=0.045  Score=44.46  Aligned_cols=69  Identities=12%  Similarity=0.091  Sum_probs=47.7

Q ss_pred             eeEEEecCCCcEEEeCC--CCcEEEEeccccccceecC-CCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeee
Q 044877           33 FQCFASTGDGSIVVGSL--DGKIRLYSSNSMRQAKTAF-PGLGSPIRYVDVTYDGRWILGTTDTYLILICTLF  102 (244)
Q Consensus        33 Ft~vats~~G~IavGS~--dG~IRLyD~~~~r~aKt~l-pglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~  102 (244)
                      =..+|++++|+|+++..  .+.|++||.. ++-..+.. +.-+.-..+|++.+||+.+++.....|++|..+.
T Consensus       202 P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         202 PIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeee
Confidence            36889999999777643  4569999974 33233322 2223346899999999877665556799998654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.95  E-value=0.27  Score=39.59  Aligned_cols=68  Identities=6%  Similarity=0.083  Sum_probs=48.9

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceec-CCCCCCCeeEEEeCCCCCEEEEeCC-c-ceEEEE
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTA-FPGLGSPIRYVDVTYDGRWILGTTD-T-YLILIC   99 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~-lpglGdPI~~vdvS~DG~~lLaT~~-~-~L~L~d   99 (244)
                      .....++.+++|. +++.+..+.|++||..+. ..++. .++...-..+|++.++|+.++|-+. + .|.+++
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             cccceeeeccceeEEeeeccccceeeeecCCc-eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence            3467889999998 566777899999998543 23322 2444555689999999998888664 3 477766

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=92.45  E-value=0.42  Score=40.29  Aligned_cols=70  Identities=10%  Similarity=0.105  Sum_probs=49.0

Q ss_pred             CceeEEEecCCCc-EEEeC-CCCcEEEEeccc-cc---cceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877           31 TNFQCFASTGDGS-IVVGS-LDGKIRLYSSNS-MR---QAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICT  100 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS-~dG~IRLyD~~~-~r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt  100 (244)
                      .-..+++++|+|. +++.+ ..+.|++|+... +.   ......+..|.--.|+.++|||+++-+++  .+.|..|+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            3356899999998 55554 456799987531 11   11223345678889999999999987666  377999886

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=91.88  E-value=0.21  Score=41.59  Aligned_cols=67  Identities=9%  Similarity=0.029  Sum_probs=47.6

Q ss_pred             eEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-cceEEEEee
Q 044877           34 QCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-TYLILICTL  101 (244)
Q Consensus        34 t~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~~L~L~dt~  101 (244)
                      -.++++++|+|.++. ..|.|+.||..+++ ..+.++.-+...+++++.||++.|..|. . +.|.-++..
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~-~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eeeEEecCCcEEEEEcCCCEEEEEeCCCCE-EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            368899999976654 67889999986554 3333443356789999999999776664 3 456666653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.77  E-value=0.27  Score=39.09  Aligned_cols=66  Identities=14%  Similarity=0.202  Sum_probs=47.1

Q ss_pred             eeEEEecCCCcE-EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEE
Q 044877           33 FQCFASTGDGSI-VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILIC   99 (244)
Q Consensus        33 Ft~vats~~G~I-avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~d   99 (244)
                      -++++++++|.+ ++....+.|..||..+..........++.| .+|++.+||+.+++... +.|..++
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p-~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAP-WGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSE-EEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cceeeecCCCCEeeeccccccccccccccceeeeeeccccCCC-ccceeeeeeeeeeeecCCCEEEEEe
Confidence            468999999995 555778889999986543222223556666 79999999987776664 4566665

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.43  E-value=0.32  Score=38.64  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=39.1

Q ss_pred             eEEEecCCCcEEE--eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcce
Q 044877           34 QCFASTGDGSIVV--GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYL   95 (244)
Q Consensus        34 t~vats~~G~Iav--GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L   95 (244)
                      ..+|++++|.|.+  .+..|.|..++..+.......++++..| .+|++++||+..++...+.+
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p-~gvav~~~g~i~v~d~~~~~   79 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQP-QGLAVDGAGTVYVTDFNNRV   79 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSC-CCEEECTTCCEEEEETTTEE
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCc-eEEEEcCCCCEEEeeeeece
Confidence            6899999999544  4566888888774332222223344444 79999999998777666553

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=90.89  E-value=0.14  Score=46.41  Aligned_cols=63  Identities=10%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             ceeEEEecCCCc-E-EEeCCCCcEEEEeccccccceec-CCCCCCCeeEEEeCCCCC--EEEEeCCcce
Q 044877           32 NFQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTA-FPGLGSPIRYVDVTYDGR--WILGTTDTYL   95 (244)
Q Consensus        32 ~Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~-lpglGdPI~~vdvS~DG~--~lLaT~~~~L   95 (244)
                      ..++...++||. + +....++.|.++|..+++..+.. +| .+..+.+++++|||+  |+++.+...+
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP-~g~gphgi~~spdg~t~YV~~~~~~~v  140 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP-NVQAIHGLRLQKVPKTNYVFCNAEFVI  140 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT-TCCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC-CCCCccceEEeccCCEEEEEeccCCcc
Confidence            356666678997 5 67789999999999988765543 45 789999999999999  6666655544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.53  Score=36.11  Aligned_cols=66  Identities=17%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             ceeEEEecCCCc-EEEeCCCC---cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC----cceEEEEe
Q 044877           32 NFQCFASTGDGS-IVVGSLDG---KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD----TYLILICT  100 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS~dG---~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~----~~L~L~dt  100 (244)
                      .....+.+++|. |+..+.++   .|.++|..+..  ...++. ........+||||++|+-++.    ..|.+++.
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~-~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSS-TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECCC-SSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             cccccccccccceeEEEeecCCceeeeEeeccccc--ceEeec-CccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            355678899988 55554444   45555654433  223343 335677899999999985542    33777774

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.32  E-value=0.11  Score=39.92  Aligned_cols=51  Identities=18%  Similarity=0.029  Sum_probs=35.4

Q ss_pred             ecCC--Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           38 STGD--GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        38 ts~~--G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      .+|+  |+ ||-- .+|+|-++|..+++ ++ .|-.....+.+..+||||++|+-++
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~-~~-~Lt~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGS-TR-KIVSNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCC-EE-EEECSSSEEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCC-EE-EEecCCCcccCEEECCCCCEEEEEE
Confidence            4566  77 4433 46788888998765 54 2333445688899999999998553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=89.14  E-value=0.92  Score=38.03  Aligned_cols=69  Identities=20%  Similarity=0.200  Sum_probs=44.3

Q ss_pred             ceeEEEecCCCc-EEEeC------CCCcEEEEecccc-c--c--ceecCCCCCCCeeEEEeCC-CCCEEEEeCC--cceE
Q 044877           32 NFQCFASTGDGS-IVVGS------LDGKIRLYSSNSM-R--Q--AKTAFPGLGSPIRYVDVTY-DGRWILGTTD--TYLI   96 (244)
Q Consensus        32 ~Ft~vats~~G~-IavGS------~dG~IRLyD~~~~-r--~--aKt~lpglGdPI~~vdvS~-DG~~lLaT~~--~~L~   96 (244)
                      .=..++++|+|. ++++.      ..+.|-.|+.... .  .  ..-..+..|.--.+|+++| ||+||+++..  +.|.
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence            345688999998 66652      2344777775310 0  0  1001133455558899998 9999998874  6699


Q ss_pred             EEEe
Q 044877           97 LICT  100 (244)
Q Consensus        97 L~dt  100 (244)
                      +|+.
T Consensus       336 v~~~  339 (365)
T d1jofa_         336 IYRW  339 (365)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.59  E-value=0.63  Score=38.36  Aligned_cols=58  Identities=10%  Similarity=0.184  Sum_probs=42.5

Q ss_pred             eeEEEecCCCcEE-EeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877           33 FQCFASTGDGSIV-VGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT   91 (244)
Q Consensus        33 Ft~vats~~G~Ia-vGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~   91 (244)
                      ...++++++|.|+ +-...|.|.-||..+........+ .+....+|++++||+.++|..
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~-~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEEEEC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC-CCCCeeEEEECCCCCEEEEec
Confidence            4689999999965 456889999999765533333334 444568999999999887754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.67  E-value=0.43  Score=43.74  Aligned_cols=83  Identities=11%  Similarity=0.171  Sum_probs=49.8

Q ss_pred             CCCCeeEEEeCCCCCEEEEeCC--cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeee--
Q 044877           71 LGSPIRYVDVTYDGRWILGTTD--TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA--  146 (244)
Q Consensus        71 lGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a--  146 (244)
                      .+-.--+|++||||+|++++-+  +++-++|..-          |...|.++        +.|+++...-..+.+-|-  
T Consensus       273 VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K----------i~~~~~~~--------~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         273 IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR----------FDAVFYEN--------ADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG----------HHHHHHSC--------C-GGGGEEECCBCCSCEEEE
T ss_pred             cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh----------hhhhhccc--------CCccccEEeecccCcCcccc
Confidence            4444568999999999999874  7899999631          22222211        233433222223444444  


Q ss_pred             eeeeecCCCCcceEEEEe--eCCeEEEEechhhh
Q 044877          147 QFSWVTENGKQERHLVAT--VGKFSVIWNFQQVK  178 (244)
Q Consensus       147 kFn~~tg~~~~E~~IvtS--tG~fvvvWn~~kV~  178 (244)
                      .|+     +++.  .-||  .++-++-||+.+..
T Consensus       335 ~fd-----~~g~--aytslfids~v~kw~~~~~~  361 (459)
T d1fwxa2         335 AFD-----GRGN--AYTSLFLDSQVVKWNIEDAI  361 (459)
T ss_dssp             EEC-----TTSE--EEEEETTTTEEEEEEHHHHH
T ss_pred             ccC-----CCce--EEEEeeccceEEEEecchhh
Confidence            444     2232  4444  78999999998664

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.48  E-value=0.73  Score=40.50  Aligned_cols=67  Identities=10%  Similarity=0.079  Sum_probs=47.3

Q ss_pred             eeEEEecCCCc-EEEe---------CCCCcEEEEeccccccceecCCCC--CCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877           33 FQCFASTGDGS-IVVG---------SLDGKIRLYSSNSMRQAKTAFPGL--GSPIRYVDVTYDGRWILGTTDTYLILICT  100 (244)
Q Consensus        33 Ft~vats~~G~-IavG---------S~dG~IRLyD~~~~r~aKt~lpgl--GdPI~~vdvS~DG~~lLaT~~~~L~L~dt  100 (244)
                      .....+||+|. |+.+         |..|.+-+||..+++ .+.+.+.-  ...+....+||||++|+=...+-|.+++.
T Consensus        63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~-~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~  141 (465)
T d1xfda1          63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH  141 (465)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred             cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc-eeeccCccCCccccceeeeccCCceEEEEecceEEEEec
Confidence            45567899997 6665         557899999997764 44333322  23566789999999998766666766653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=84.26  E-value=1.4  Score=35.48  Aligned_cols=69  Identities=13%  Similarity=0.062  Sum_probs=47.1

Q ss_pred             CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecC--CCCCCCeeEEEeCCCCCEEEEeCC-cceEEEE
Q 044877           31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAF--PGLGSPIRYVDVTYDGRWILGTTD-TYLILIC   99 (244)
Q Consensus        31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~l--pglGdPI~~vdvS~DG~~lLaT~~-~~L~L~d   99 (244)
                      ....++|++++|. ++++..++.|+.|+........+.+  ..-+....++.+.+||+++++.+. ..+..+|
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~  140 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLID  140 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeee
Confidence            4578999999999 5666678888888875322121122  123556789999999998887764 4455555

>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 3a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.29  E-value=2.2  Score=38.34  Aligned_cols=69  Identities=9%  Similarity=0.136  Sum_probs=45.2

Q ss_pred             ceeEEEecC----CCc---EEEeCCCCcEE-EE--eccccc--cc----eecCCCCCCCeeEEEeCCCCCEEEEeCCcce
Q 044877           32 NFQCFASTG----DGS---IVVGSLDGKIR-LY--SSNSMR--QA----KTAFPGLGSPIRYVDVTYDGRWILGTTDTYL   95 (244)
Q Consensus        32 ~Ft~vats~----~G~---IavGS~dG~IR-Ly--D~~~~r--~a----Kt~lpglGdPI~~vdvS~DG~~lLaT~~~~L   95 (244)
                      .||+||++.    +|.   +.+|..+|.|. +.  ......  .+    ...+-..+.||..|.+++++++|.+++...|
T Consensus       405 ~~T~iav~~v~~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~iee~~~~~~~~pI~~l~l~~~~~~Lyv~t~~~V  484 (495)
T d1q47a_         405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV  484 (495)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred             eeEEEEEEEEeccCCcEEEEEEEcCCCEEEEEEEcCCCCccccceeEEEEEeecCCCCceEEEEEeCCCCEEEEEeCCeE
Confidence            589998743    333   89999999986 22  111100  01    1111247899999999999999999998776


Q ss_pred             EEEEe
Q 044877           96 ILICT  100 (244)
Q Consensus        96 ~L~dt  100 (244)
                      .=+..
T Consensus       485 ~~vpv  489 (495)
T d1q47a_         485 AQLPL  489 (495)
T ss_dssp             EEEES
T ss_pred             EEEEh
Confidence            55553