Citrus Sinensis ID: 044882
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 815 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR4 | 1054 | Putative disease resistan | yes | no | 0.680 | 0.526 | 0.377 | 8e-98 | |
| Q9LRR5 | 1424 | Putative disease resistan | no | no | 0.574 | 0.328 | 0.407 | 2e-90 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.644 | 0.541 | 0.321 | 2e-55 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.608 | 0.506 | 0.332 | 5e-53 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.701 | 0.576 | 0.309 | 4e-52 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.639 | 0.527 | 0.319 | 6e-49 | |
| P0DI18 | 1049 | Probable disease resistan | no | no | 0.695 | 0.540 | 0.254 | 3e-16 | |
| P0DI17 | 1049 | Probable disease resistan | no | no | 0.695 | 0.540 | 0.254 | 3e-16 | |
| Q38834 | 852 | Disease resistance RPP13- | no | no | 0.477 | 0.456 | 0.251 | 9e-14 | |
| O81825 | 919 | Probable disease resistan | no | no | 0.267 | 0.237 | 0.277 | 1e-13 |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 358 bits (920), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 227/602 (37%), Positives = 337/602 (55%), Gaps = 47/602 (7%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
AYCS+FPK + FE+++++LLW A G L S E+LG ++F EL +RS +Q++
Sbjct: 431 AYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK--- 487
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
+R++MHD IN+LAQ+A+GE + E ++ SE R+LSY+ + FE L
Sbjct: 488 TRYIMHDFINELAQFASGEFSSKFEDGCKLQ----VSERTRYLSYLRDNYAEPMEFEALR 543
Query: 121 DIQHLRTFLPVTLSNSSRG-----HLAYSILPKLFKLQRLRAFSLRGYHIFELP-DSIGD 174
+++ LRTFLP++L+NSSR ++ +LP L RLR SL Y I LP D +
Sbjct: 544 EVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTL---TRLRVLSLSHYKIARLPPDFFKN 600
Query: 175 LRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 234
+ + R+L+LS TE+ LP+S+ +YNL +LLL C LK+L D+ NL L +L TK
Sbjct: 601 ISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK 660
Query: 235 SLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKE 294
L +MP GRL SLQTL F V GS + EL L LHG L I +L+ V DV DA E
Sbjct: 661 -LRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAE 719
Query: 295 AQLDGKKNLRELLLRW----TLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTK 350
A L+ KK+LRE+ W + S + ++ + E +V L+PH ++E+ I Y G +
Sbjct: 720 ANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRR 779
Query: 351 FPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGN--- 407
FP W D SFS +V + C CT+LPS+GQLP LK L + GM ++ +G +FY +
Sbjct: 780 FPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQ 839
Query: 408 ---DSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHL 464
PF LETLRF+++ +W++W+ +R +G + FP L++L ILRC +L GT P L
Sbjct: 840 LRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFL 898
Query: 465 PALEMLVIEGC-------EELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKK 517
P+L L I C + S +L L I C +V P + + L K
Sbjct: 899 PSLISLHIYKCGLLDFQPDHHEYSYRNLQTLS--IKSSCDTLV-----KFPLNHFANLDK 951
Query: 518 IEIRECDALKS--LPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQ-LPLSLKNLLIHKCDN 574
+E+ +C +L S L + G N +L ++ I C +L + + LP +L+ + I C
Sbjct: 952 LEVDQCTSLYSLELSNEHLRGPN-ALRNLRINDCQNLQLLPKLNALPQNLQ-VTITNCRY 1009
Query: 575 IR 576
+R
Sbjct: 1010 LR 1011
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 197/484 (40%), Positives = 276/484 (57%), Gaps = 16/484 (3%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
A CS+FPK + F+ EE++LLW A+ LL S ED+G + +L A+SF Q+ ++
Sbjct: 423 ALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITM 482
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
+ F+MHDL+NDLA+ +G+ FR+E + RH S+ CD F +
Sbjct: 483 TSFVMHDLMNDLAKAVSGDFCFRLED----DNIPEIPSTTRHFSFSRSQCDASVAFRSIC 538
Query: 121 DIQHLRTFLPVTLSNSSRG-HLAYSIL-PKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL 178
+ LRT LP S L +L P L L LR SL Y I LP S+ L+ L
Sbjct: 539 GAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLL 598
Query: 179 RYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEE 238
RYL+LS T+I+ LPE V L NL +LLL +C L L + L L L T L E
Sbjct: 599 RYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVE 657
Query: 239 MPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLD 298
MP GI +L SLQ L NFV+G+ SG+GL ELK L+HL GTL IS+L+NV +AK+A L
Sbjct: 658 MPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLK 717
Query: 299 GKKNLRELLLRWTLS----TDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTW 354
K L L+L+WT+ GS + A +K+VL ML+PH +L+ FCI Y G FP W
Sbjct: 718 RKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKW 777
Query: 355 FGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFY---GNDSPI 411
GDSSF + ++ +C++C +LP VGQLPSLK+L++ + ++++G +F+ N +
Sbjct: 778 LGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGV 837
Query: 412 PFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLV 471
PF L+ L+F M W++WI G+ FP L++L I RC L+ FPE LP+ +
Sbjct: 838 PFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVT 895
Query: 472 IEGC 475
I C
Sbjct: 896 ISDC 899
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 208/647 (32%), Positives = 294/647 (45%), Gaps = 122/647 (18%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPS-EDLGRKFFRELRARSFIQQ--SS 57
AYC++FPKD + E+E++I LW A G L GN ED+G + ++EL RSF Q+
Sbjct: 408 AYCAVFPKDAKMEKEKLISLWMAHGFL--LSKGNMELEDVGDEVWKELYLRSFFQEIEVK 465
Query: 58 NSISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFE 117
+ + F MHDLI+DLA TS + S S N+R ++
Sbjct: 466 DGKTYFKMHDLIHDLA-------------TSLFSANTS-SSNIREIN------------- 498
Query: 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRY 177
+H T + +S + + LP L K LR +L +LP SIGDL +
Sbjct: 499 -----KHSYTHM---MSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVH 550
Query: 178 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE 237
LRYLNL G+ +R+LP+ + KL NL +L L+ C +L L + L L +L ++SL
Sbjct: 551 LRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLT 610
Query: 238 EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQL 297
MP IG LT L+TL FVVG+ G L EL L +L+G++ IS LE VK+ DAKEA L
Sbjct: 611 CMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNL-NLYGSIKISHLERVKNDKDAKEANL 669
Query: 298 DGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGD 357
K NL L + W + G E+E E VL LKPH NL I G+ G P W
Sbjct: 670 SAKGNLHSLSMSW--NNFGPHIYESE-EVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNH 726
Query: 358 SSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLE 417
S N+V++ N C+ LP G LP L+ L E + + + ++
Sbjct: 727 SVLKNIVSILISNFRNCSCLPPFGDLPCLESL-------------ELHWGSADVEYV--- 770
Query: 418 TLRFEDMQEWEDWIPLRSGQGVE-GFPKLRELHILRCSKLKGTFP----EHLPALEMLVI 472
E++ I + SG FP LR+L I LKG E P LE ++I
Sbjct: 771 ----EEVD-----IDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMII 821
Query: 473 EGCEELLVS-----VTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALK 527
C L +S +TSL ++ + ++K+ A LK + I C+ LK
Sbjct: 822 HECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLAN--------LKYLTISRCNNLK 873
Query: 528 SLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSS 587
LP T +A++ +LK+L I C + +L E
Sbjct: 874 ELP----------------------TSLASLN---ALKSLKIQLCCALESLPEE------ 902
Query: 588 SSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL 634
GL L L E+ + C L PEG LT L+I C +L
Sbjct: 903 ----GLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQL 945
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 193/580 (33%), Positives = 276/580 (47%), Gaps = 84/580 (14%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPS-EDLGRKFFRELRARSFIQQ--SS 57
YC++FPKD + +E +I W A G L GN ED+G + + EL RSF Q+
Sbjct: 407 VYCAVFPKDTKMAKENLIAFWMAHGFL--LSKGNLELEDVGNEVWNELYLRSFFQEIEVE 464
Query: 58 NSISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFE 117
+ + F MHDLI+DLA TS + S S N+R ++
Sbjct: 465 SGKTYFKMHDLIHDLA-------------TSLFSANTS-SSNIREINAN----------- 499
Query: 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLR 176
YD + +S+ S P L K LR +LR ++ +LP SIGDL
Sbjct: 500 --YDGYMMSIGFAEVVSSYS---------PSLLQKFVSLRVLNLRNSNLNQLPSSIGDLV 548
Query: 177 YLRYLNLSGT-EIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKS 235
+LRYL+LSG IR LP+ + KL NL +L L CD L L L L +L S
Sbjct: 549 HLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGC-S 607
Query: 236 LEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEA 295
L P IG LT L++L FV+GK G L ELK L +L+G+++I+KL+ VK DAKEA
Sbjct: 608 LTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNL-NLYGSISITKLDRVKKDTDAKEA 666
Query: 296 QLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWF 355
L K NL L L W L DG ++E VL LKPH NL+ I+G+GG + P W
Sbjct: 667 NLSAKANLHSLCLSWDL--DGKHRYDSE----VLEALKPHSNLKYLEINGFGGIRLPDWM 720
Query: 356 GDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAV-CGMSRVKRLGSEFYGNDSPIPFL 414
S N+V++ C+ C+ LP G+LP L+ L + G + V+ + N P F
Sbjct: 721 NQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTGSADVEYVED----NVHPGRFP 776
Query: 415 CLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEG 474
L L D + + + +G + FP L E+ C + L+++V +
Sbjct: 777 SLRKLVIWDFSNLKGLLKM---EGEKQFPVLEEMTFYWCPMFVIPTLSSVKTLKVIVTDA 833
Query: 475 CEELLVSVTSLPALCKF-ISGGCKKV-----VWKSAAG--------------HPGSQNSV 514
+L S+++L AL IS + ++KS A P S S+
Sbjct: 834 T--VLRSISNLRALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASL 891
Query: 515 --LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSL 552
LK ++ CDAL+SLPE + G +SL ++S+ C L
Sbjct: 892 NALKSLKFEFCDALESLPEEGVKGL-TSLTELSVSNCMML 930
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 215/695 (30%), Positives = 309/695 (44%), Gaps = 123/695 (17%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPS-EDLGRKFFRELRARSFIQQ--SS 57
AYC++FPKD + E+E +I LW A L GN ED+G + + EL RSF Q+
Sbjct: 407 AYCAVFPKDTKIEKEYLIALWMAHSFL--LSKGNMELEDVGNEVWNELYLRSFFQEIEVK 464
Query: 58 NSISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFE 117
+ + F MHDLI+DLA + S ++R ++ VK E
Sbjct: 465 SGKTYFKMHDLIHDLATSMF--------------SASASSRSIRQIN--------VKDDE 502
Query: 118 DL-YDIQHLRTFLPVTLSNSSRGHLAYSILPKLFK-LQRLRAFSLRGYHIFELPDSIGDL 175
D+ + + + + + + S + S P LFK LR +L +LP S+GDL
Sbjct: 503 DMMFIVTNYKDMMSIGFS-----EVVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDL 557
Query: 176 RYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKS 235
+LRYL+LSG +I +LP+ + KL NL +L L +C L L L L +L +
Sbjct: 558 VHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHC-P 616
Query: 236 LEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEA 295
L MP IG LT L+TL FVVG+ G L EL+ L +L G ++I+ LE VK+ +AKEA
Sbjct: 617 LTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITHLERVKNDMEAKEA 675
Query: 296 QLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWF 355
L K NL L + W D + E+E E VL LKPH NL+ I + G P W
Sbjct: 676 NLSAKANLHSLSMSW----DRPNRYESE-EVKVLEALKPHPNLKYLEIIDFCGFCLPDWM 730
Query: 356 GDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLC 415
S N+V++ C+ C+ LP G+LP C
Sbjct: 731 NHSVLKNVVSILISGCENCSCLPPFGELP------------------------------C 760
Query: 416 LETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKG----TFPEHLPALEMLV 471
LE+L +D +++ FP LR+LHI LKG E P LE +
Sbjct: 761 LESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMK 820
Query: 472 IEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEI-RECDA--LKS 528
I C + P L S +KK+EI E DA L S
Sbjct: 821 ISDCPMFV-----FPTL------------------------SSVKKLEIWGEADAGGLSS 851
Query: 529 LPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSS 588
+ S+L + I H++T + L KNL +N+ L+V
Sbjct: 852 ISNL------STLTSLKIFSNHTVTSL----LEEMFKNL-----ENLIYLSVSFLENLKE 896
Query: 589 SRSGLHNLRQLQEISIRRCGNLVSFPEGGLP-CAKLTRLEISSCKRLEALPKGLHNLTSL 647
+ L +L L+ + IR C L S PE GL + LT L + C L+ LP+GL +LT+L
Sbjct: 897 LPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTL 956
Query: 648 QELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIW 682
L I +L E G+ + ++ N+ I+
Sbjct: 957 TSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIY 991
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 195/610 (31%), Positives = 287/610 (47%), Gaps = 89/610 (14%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPS-EDLGRKFFRELRARSFIQQ--SS 57
AYC++FPKD + +E +I LW A G L GN ED+G + + EL RSF Q+ +
Sbjct: 409 AYCAVFPKDTKMIKENLITLWMAHGFL--LSKGNLELEDVGNEVWNELYLRSFFQEIEAK 466
Query: 58 NSISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFE 117
+ + F +HDLI+DLA TS + S N+R ++ VK ++
Sbjct: 467 SGNTYFKIHDLIHDLA-------------TSLFSASASCG-NIREIN--------VKDYK 504
Query: 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFK-LQRLRAFSLRGYHIFELPDSIGDLR 176
I F V S S P L K LR +L + +LP SIGDL
Sbjct: 505 HTVSI----GFAAVVSSYS----------PSLLKKFVSLRVLNLSYSKLEQLPSSIGDLL 550
Query: 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSL 236
+LRYL+LS R+LPE + KL NL +L + +C L L L+ L HL L
Sbjct: 551 HLRYLDLSCNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PL 609
Query: 237 EEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQ 296
P IG LT L+TL F+VG G L ELK L +L G+++I+ LE VK+ DA EA
Sbjct: 610 TSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNL-NLCGSISITHLERVKNDTDA-EAN 667
Query: 297 LDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFG 356
L K NL+ L + W DG + E++ E VL LKPH NL+ I +GG +FP+W
Sbjct: 668 LSAKANLQSLSMSW--DNDGPNRYESK-EVKVLEALKPHPNLKYLEIIAFGGFRFPSWIN 724
Query: 357 DSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAV-CGMSRVKR-----LGSEFYGNDSP 410
S ++++ ++C C LP G+LP L++L + G + V+ + S F S
Sbjct: 725 HSVLEKVISVRIKSCKNCLCLPPFGELPCLENLELQNGSAEVEYVEEDDVHSRFSTRRS- 783
Query: 411 IPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEML 470
F L+ LR + + L +G E FP L E+ IL C FP L +++ L
Sbjct: 784 --FPSLKKLRIWFFRSLKG---LMKEEGEEKFPMLEEMAILYCPLF--VFPT-LSSVKKL 835
Query: 471 VIEGCEEL--LVSVTSLPALCKFISGGCKKVV--------------------WKSAAGHP 508
+ G L S+++L L G + +K+ P
Sbjct: 836 EVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKDLP 895
Query: 509 GSQNSV--LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYI-AAVQLPLSLK 565
S S+ LK+++I CD+L+S PE + G +SL + ++ C L + +Q +L
Sbjct: 896 TSLTSLNALKRLQIESCDSLESFPEQGLEGL-TSLTQLFVKYCKMLKCLPEGLQHLTALT 954
Query: 566 NLLIHKCDNI 575
NL + C +
Sbjct: 955 NLGVSGCPEV 964
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 173/681 (25%), Positives = 275/681 (40%), Gaps = 114/681 (16%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLD-HGESGNPSEDLGRKFFRELRARSF-IQQSSNS 59
Y + FP DYE + + W A G+ G D+G + EL R+ I +
Sbjct: 430 YLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVK 489
Query: 60 ISRF---LMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFS-ENLRHLSYIPEYCDGVKR 115
SRF +HD++ ++ A E F +S + S S R L Y +Y +
Sbjct: 490 TSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLVY--QYPITLDV 547
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIF--ELPDSI 172
+D+ D + LR+ + V + G ++ +L F +L+ LR + + +L SI
Sbjct: 548 EKDINDPK-LRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASSI 606
Query: 173 GDLRYLRYLNLSGTEIRTLPESVNKLYNLHSL----LLEDCDRLKKLCADMGNLAKLHHL 228
G L +LRYLNL E+ +P S+ L L L L+ + + +M L L
Sbjct: 607 GQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYLALP 666
Query: 229 KNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKD 288
K+ K+ E+ L L+TL NF S LR + L L T+ + K +++
Sbjct: 667 KDMGRKTKLEL----SNLVKLETLKNFSTKNCSLEDLRGMVRLRTL--TIELRKETSLET 720
Query: 289 VGDAKEAQLDGKKNLRELLLRWTLSTDGSSSR--EAEIEKD-------VLNMLKPHENLE 339
+ A + G K L L T++ GS R EA I D L + P + E
Sbjct: 721 LA----ASIGGLKYLESL----TITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKE 772
Query: 340 QFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDM-CTALPSVGQLPSLKHLAVCGMSRVK 398
Q FP S+L TL ++C + +P + +L LK L + R
Sbjct: 773 Q---------HFP--------SHLTTLYLQHCRLEEDPMPILEKLHQLKELE---LRRKS 812
Query: 399 RLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKG 458
G E + P L+ L + ++EWEDW S P L L I C KLK
Sbjct: 813 FSGKEMVCSSGGFP--QLQKLSIKGLEEWEDWKVEES-----SMPVLHTLDIRDCRKLKQ 865
Query: 459 TFPEHLPA-LEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGH----PGSQNS 513
EHLP+ L + + C + +P L + + +++++S +G GS
Sbjct: 866 LPDEHLPSHLTSISLFFC---CLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAGSGFP 922
Query: 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCD 573
L K+++ E D L E W+ +ED S+ Q H+L I +C
Sbjct: 923 QLHKLKLSELDGL----EEWI------VEDGSMPQLHTLE---------------IRRCP 957
Query: 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKR 633
++ L G + + I +G +P L L I +C +
Sbjct: 958 KLKKLP--NGFPQLQNLELNELEEWEEWI----------VEDGSMPL--LHTLRIWNCPK 1003
Query: 634 LEALPKGLHNLTSLQELTIGR 654
L+ LP GL + SL+ LT+ +
Sbjct: 1004 LKQLPDGLRFIYSLKNLTVPK 1024
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 173/681 (25%), Positives = 275/681 (40%), Gaps = 114/681 (16%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLD-HGESGNPSEDLGRKFFRELRARSF-IQQSSNS 59
Y + FP DYE + + W A G+ G D+G + EL R+ I +
Sbjct: 430 YLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVK 489
Query: 60 ISRF---LMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFS-ENLRHLSYIPEYCDGVKR 115
SRF +HD++ ++ A E F +S + S S R L Y +Y +
Sbjct: 490 TSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLVY--QYPITLDV 547
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIF--ELPDSI 172
+D+ D + LR+ + V + G ++ +L F +L+ LR + + +L SI
Sbjct: 548 EKDINDPK-LRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASSI 606
Query: 173 GDLRYLRYLNLSGTEIRTLPESVNKLYNLHSL----LLEDCDRLKKLCADMGNLAKLHHL 228
G L +LRYLNL E+ +P S+ L L L L+ + + +M L L
Sbjct: 607 GQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTLVPNVLKEMQQLRYLALP 666
Query: 229 KNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKD 288
K+ K+ E+ L L+TL NF S LR + L L T+ + K +++
Sbjct: 667 KDMGRKTKLEL----SNLVKLETLKNFSTKNCSLEDLRGMVRLRTL--TIELRKETSLET 720
Query: 289 VGDAKEAQLDGKKNLRELLLRWTLSTDGSSSR--EAEIEKD-------VLNMLKPHENLE 339
+ A + G K L L T++ GS R EA I D L + P + E
Sbjct: 721 LA----ASIGGLKYLESL----TITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKE 772
Query: 340 QFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDM-CTALPSVGQLPSLKHLAVCGMSRVK 398
Q FP S+L TL ++C + +P + +L LK L + R
Sbjct: 773 Q---------HFP--------SHLTTLYLQHCRLEEDPMPILEKLHQLKELE---LRRKS 812
Query: 399 RLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKG 458
G E + P L+ L + ++EWEDW S P L L I C KLK
Sbjct: 813 FSGKEMVCSSGGFP--QLQKLSIKGLEEWEDWKVEES-----SMPVLHTLDIRDCRKLKQ 865
Query: 459 TFPEHLPA-LEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGH----PGSQNS 513
EHLP+ L + + C + +P L + + +++++S +G GS
Sbjct: 866 LPDEHLPSHLTSISLFFC---CLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAGSGFP 922
Query: 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCD 573
L K+++ E D L E W+ +ED S+ Q H+L I +C
Sbjct: 923 QLHKLKLSELDGL----EEWI------VEDGSMPQLHTLE---------------IRRCP 957
Query: 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKR 633
++ L G + + I +G +P L L I +C +
Sbjct: 958 KLKKLP--NGFPQLQNLELNELEEWEEWI----------VEDGSMPL--LHTLRIWNCPK 1003
Query: 634 LEALPKGLHNLTSLQELTIGR 654
L+ LP GL + SL+ LT+ +
Sbjct: 1004 LKQLPDGLRFIYSLKNLTVPK 1024
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 119/473 (25%), Positives = 191/473 (40%), Gaps = 84/473 (17%)
Query: 4 SLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQ----QSSNS 59
SL+P+D +++++ W G + +G + + G F L R I+ S +
Sbjct: 423 SLYPEDCVIPKQQLVHGWIGEGFV-MWRNGRSATESGEDCFSGLTNRCLIEVVDKTYSGT 481
Query: 60 ISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSE----NLRHLSYIPEYCDGVKR 115
I +HD++ DL ++ K+ SFS N RHL +
Sbjct: 482 IITCKIHDMVRDLV--------------IDIAKKDSFSNPEGLNCRHLGISGNF------ 521
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP-----D 170
E + H + T L + K + LR + IF+ P D
Sbjct: 522 DEKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDI-SKSIFDAPLSEILD 580
Query: 171 SIGDLRYLRYLNLSGTE-IRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229
I L++L L+LS T + P S+ L+NL L C LK+L + KL L
Sbjct: 581 EIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLD 640
Query: 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGK-GSGSGLRELKLLTHLHGTLNISKLENVKD 288
+N SLE P GIG L L+ L F + +G L E+K LT N+ KL
Sbjct: 641 MTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLSEVKNLT------NLRKLGLSLT 694
Query: 289 VGDA-KEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYG 347
GD +E +LD NL +L+ ++S + S ++ + + PH+ L + + Y
Sbjct: 695 RGDQIEEEELDSLINLSKLM---SISINCYDSYGDDLITKIDALTPPHQ-LHELSLQFYP 750
Query: 348 GTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGN 407
G P+W S +LP L+++++C + VK + F+GN
Sbjct: 751 GKSSPSWL-----------------------SPHKLPMLRYMSICSGNLVK-MQEPFWGN 786
Query: 408 DSP---IPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLK 457
++ I L L +L DM DW L+ + P LR + C +L+
Sbjct: 787 ENTHWRIEGLMLSSLSDLDM----DWEVLQ-----QSMPYLRTVTANWCPELE 830
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 41/259 (15%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSIS 61
+C+LFP+DY + E+I+ W A GLLD + G L+ S + + +S
Sbjct: 369 FCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKD-SCLLEDGDSCD 427
Query: 62 RFLMHDLINDLAQW---AAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPE--YCDGVKRF 116
MHD++ D A W + GE + + R L P+ + V+R
Sbjct: 428 TVKMHDVVRDFAIWFMSSQGEGFHSLVMAG------------RGLIEFPQDKFVSSVQR- 474
Query: 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRG-YHIFELPDS-IGD 174
V+L + L +++ + L L L+G H+ E+P+ +
Sbjct: 475 --------------VSLMANKLERLPNNVIEGVETLVLL----LQGNSHVKEVPNGFLQA 516
Query: 175 LRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 234
LR L+LSG IRTLP+S + L++L SL+L +C +L+ L + +L KL L + +
Sbjct: 517 FPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNL-PSLESLVKLQFL-DLHES 574
Query: 235 SLEEMPVGIGRLTSLQTLC 253
++ E+P G+ L+SL+ +C
Sbjct: 575 AIRELPRGLEALSSLRYIC 593
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 815 | ||||||
| 400131587 | 1388 | FB_MR5 [Malus x robusta] | 0.974 | 0.572 | 0.374 | 1e-146 | |
| 225465962 | 1290 | PREDICTED: putative disease resistance R | 0.959 | 0.606 | 0.389 | 1e-146 | |
| 284026888 | 1424 | CC-NBS-LRR protein [Quercus suber] | 0.927 | 0.530 | 0.400 | 1e-145 | |
| 225449872 | 1322 | PREDICTED: putative disease resistance p | 0.970 | 0.598 | 0.387 | 1e-145 | |
| 359495083 | 1280 | PREDICTED: putative disease resistance p | 0.954 | 0.607 | 0.398 | 1e-144 | |
| 225449961 | 1318 | PREDICTED: putative disease resistance p | 0.964 | 0.596 | 0.388 | 1e-143 | |
| 225464007 | 1327 | PREDICTED: putative disease resistance p | 0.968 | 0.594 | 0.377 | 1e-141 | |
| 359495896 | 1548 | PREDICTED: putative disease resistance p | 0.953 | 0.501 | 0.404 | 1e-141 | |
| 147775060 | 1330 | hypothetical protein VITISV_014782 [Viti | 0.971 | 0.595 | 0.377 | 1e-140 | |
| 359495052 | 1324 | PREDICTED: putative disease resistance p | 0.969 | 0.596 | 0.375 | 1e-139 |
| >gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 366/977 (37%), Positives = 503/977 (51%), Gaps = 183/977 (18%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVG-LLDHGESGNPSEDLGRKFFRELRARSFIQQSSNS 59
AYCS+ P DYEFEE+++ILLW A G +L E EDLG +FR+L +RS Q+S+
Sbjct: 426 AYCSILPNDYEFEEKQMILLWMAEGFILPRPEDKKQIEDLGADYFRDLVSRSLFQKSTKC 485
Query: 60 ISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLR------HLSYIPEYCDGV 113
IS+++MHDLI DLA+WAAGEI FR+E +KQ E LR H SYI DGV
Sbjct: 486 ISKYVMHDLIGDLARWAAGEICFRLE-----DKQNDDGEQLRCFPKARHSSYIRGLSDGV 540
Query: 114 KRFEDLYDIQHLRTFLPV---TLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPD 170
KRFE ++++LRTFLP+ + N +A+ +LPKL Q LR S Y I ELPD
Sbjct: 541 KRFEVFSELKYLRTFLPLRKDSFWNYLSRQVAFDLLPKL---QYLRVLSFNCYKITELPD 597
Query: 171 SIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230
SIGDLRYLRYL+LS T+I +LP+S + LYNL +L+LE C +LK L DM NL L HL N
Sbjct: 598 SIGDLRYLRYLDLSYTDITSLPKSTSTLYNLQTLILEGCSKLKALPIDMSNLVNLRHLNN 657
Query: 231 SNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSG---SGLRELKLLTHLHGTLNISKLENVK 287
SN LE+MP +GRL +LQ+L FVV G G SG+REL+ L HL GTL IS+LENV
Sbjct: 658 SNVSLLEDMPPQLGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLRGTLCISRLENVT 717
Query: 288 DVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYG 347
DV DA+ A L+ K+ L L+L W+ S+D E E VL+ML+PH L++ I Y
Sbjct: 718 DVEDAQRANLNCKERLDSLVLEWSHSSDTR-----ETESAVLDMLQPHTKLKELTIKSYA 772
Query: 348 GTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGN 407
G +F +W G FSN+V + E C+ C +LP +G+LP LK L + GM+ V+ +G+EFYG
Sbjct: 773 GKEFSSWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHLKELYIRGMNAVESVGAEFYGE 832
Query: 408 DSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPAL 467
S +PF LETL F DMQ W+ W+P ++ FP L+ L + +CSKL+G PE+L +L
Sbjct: 833 CS-LPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLVRKCSKLEGKLPENLDSL 891
Query: 468 EMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALK 527
L I CEELLVS+ + L + GCK VV +A + +L+ + + L
Sbjct: 892 ASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAK----VEFELLESLYLSNISELT 947
Query: 528 SLPEAWMCGTN-SSLEDMSIRQCHSLT------------YIAAVQLPLSLKNLLIH---- 570
SL +C + + D+ I C LT I+ +L + +LL+
Sbjct: 948 SLQTGELCRNGLNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLEIEDNSLLVEELGK 1007
Query: 571 KCDNIRTLTV----------EEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPC 620
+ D + L + ++ GL+ L LQE+ I C +LVSFP+ GLP
Sbjct: 1008 EADELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLPP 1067
Query: 621 A----------------------KLTRLEISSCKRLEAL---------PKGLHN------ 643
+ L R++I C+ L +L HN
Sbjct: 1068 SLKDIEITECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSHNCLEYLN 1127
Query: 644 ----------------LTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSM-- 685
+ +L+EL I +L L DGL N + +E N I +
Sbjct: 1128 IERCQSLTLLSLSDQLVRALRELDIYDCEQLEFLAPDGLFCNNTNYFLE-NFRIRRCQNL 1186
Query: 686 --IERGRGFHRFSSLRQLTIINCD------DDMVSFPPKAD---DKRLGTALPLPASLTS 734
+ R G R S+LR++ I +CD +DM +F D R G PA+LTS
Sbjct: 1187 KSLPRLSGGIRGSNLREIRITDCDRLEALPEDMHNFNSLEKLIIDYREGLTCSFPANLTS 1246
Query: 735 ---------------------------LWISG---------------------------- 739
LWI G
Sbjct: 1247 LMIWKVKSCKSLWELEWGLHRLTSLRYLWIGGEDPDMVSFPPDMVRMETLLPKSLTELSI 1306
Query: 740 --FPNLERLSSSIVD-LQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCRK 796
FPNL++LSS L +L SL L DCPKL P++GLP SL +L I+GCP+++E+C+
Sbjct: 1307 GGFPNLKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERCQP 1366
Query: 797 DGGQYWDLLTHIPDVTI 813
G+YW ++HIP + I
Sbjct: 1367 GKGRYWHKISHIPYIDI 1383
|
Source: Malus x robusta Species: Malus x robusta Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465962|ref|XP_002269685.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 344/884 (38%), Positives = 494/884 (55%), Gaps = 102/884 (11%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
AYCS+FPKDY FE+E+++LLW A G LD + G E+ G F L +RSF Q+ N+
Sbjct: 433 AYCSIFPKDYVFEKEKLVLLWMAEGFLDGSKRGETIEEFGSMCFDNLLSRSFFQRYHNND 492
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
S+F+MHDLI+DL Q+ +G+ FR+ E Q + +RH SYI +Y K+ +
Sbjct: 493 SQFVMHDLIHDLTQFTSGKFCFRL--VGEQQNQIQIYKEIRHSSYIWQYSKVFKKVKSFL 550
Query: 121 DIQHLRTFLPV-TLSNSSRG-HLAYSILPKLFKLQR-LRAFSLRGYHIFELPDSIGDLRY 177
DI LRTFL + S+++R +L+ + L R LR SL Y I ELP SI +L++
Sbjct: 551 DIYSLRTFLALPPYSDAARNFYLSKEVSHCLLSTLRCLRVLSLSHYDIEELPHSIKNLKH 610
Query: 178 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE 237
LRYL+LS T I TLPES+ L+NL +L+L +C L L MG L L HLK TK LE
Sbjct: 611 LRYLDLSHTSIITLPESITTLFNLQTLMLSECRYLVDLPTKMGRLINLRHLKIDGTK-LE 669
Query: 238 EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQL 297
MP+ + R+ +L+TL FVVGK +GS + EL+ L+HL GTL I KL+NV D DA E+ +
Sbjct: 670 RMPMEMSRMKNLRTLTTFVVGKHTGSRVGELRDLSHLSGTLTIFKLQNVMDARDAFESNM 729
Query: 298 DGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGD 357
GK+ L +L L W D + + ++ VL L+PH NL++ I Y G KFP+W G+
Sbjct: 730 KGKECLDKLELNW--EDDNAIAGDSHDAASVLEKLQPHSNLKELSIGCYYGAKFPSWLGE 787
Query: 358 SSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGN--DSPIPFLC 415
SF N+V+L+ NC C +LP +GQL SL++L++ ++++G EFYGN S PF
Sbjct: 788 PSFINMVSLQLFNCKNCASLPPLGQLRSLQNLSIVKNDVLQKVGQEFYGNGPSSFKPFGS 847
Query: 416 LETLRFEDMQEWEDWIPLRSGQGVEG--FPKLRELHILRCSKLKGTFPEHLPALEMLVIE 473
L+TL FE++ EWE+W GVEG FP L EL I C KLKG P+HLP L LVI
Sbjct: 848 LQTLVFEEISEWEEWDCF----GVEGGEFPHLNELRIESCPKLKGDLPKHLPVLTSLVIL 903
Query: 474 GCEELLVSVTSLPALCKFISGGC------KKVVWKSAA--------GHPGSQNSVLKKIE 519
C +L+ + P++ K C +K+V K G P +L+ +E
Sbjct: 904 ECGQLVCQLPEAPSIQKLNLKECDELTSLRKLVIKECQSLSSLPEMGLP----PMLETLE 959
Query: 520 IRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIA--------------AVQLPL--- 562
I +C L++LPE M N+SL+ + I C SLT + V+LPL
Sbjct: 960 IEKCHILETLPEG-MTQNNTSLQSLYIEDCDSLTSLPIISSLKSLEIKQCRKVELPLPEE 1018
Query: 563 ------------------------------SLKNLLIHKCDNIRTLTVEEGIQSSSSRSG 592
LK L I C+N+ + + +G+++
Sbjct: 1019 TTQNYYPWLAYLRINRSCDSLTSFPLAFFTKLKTLHIWNCENLESFYIPDGLRN------ 1072
Query: 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHN-LTSLQELT 651
+L L +I I C NLVSFP+GGL + L L IS+CK+L++LP+ +H LTSL +L
Sbjct: 1073 -MDLTSLHKIKIDDCPNLVSFPQGGLRASNLRELFISNCKKLKSLPQRMHTLLTSLDKLW 1131
Query: 652 IGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTII-NCDDDM 710
I E+ S E GLPTNL SL I ++ +S E G SLR+L I+ + +
Sbjct: 1132 ISDCPEIVSFPEGGLPTNLSSLHIGSCYKLMESRKE--WGLQTLPSLRRLVIVGGTEGGL 1189
Query: 711 VSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKY 769
SF + L LP++L SL IS FP+L+ L + + +L +L L + +C KLK
Sbjct: 1190 ESFSEE--------WLLLPSTLFSLDISDFPDLKSLDNLGLENLTSLERLVIWNCDKLKS 1241
Query: 770 FPEKGLPSSLLQLDIWGCPLIEEKCRKDGGQYWDLLTHIPDVTI 813
FP++GLP+SL L+I+ CPL++++C++D G+ W + HIP + +
Sbjct: 1242 FPKQGLPASLSVLEIYRCPLLKKRCQRDKGKEWRKIAHIPSIEM 1285
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 350/873 (40%), Positives = 476/873 (54%), Gaps = 117/873 (13%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
AYCSLFP+DYEFEE+++ILLW A GL+ E P EDLG ++FR+L +RSF QQSS++
Sbjct: 427 AYCSLFPRDYEFEEKQLILLWMAEGLIYQAEGDKPMEDLGGEYFRDLLSRSFFQQSSSNK 486
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
SRF+MHDLI DLAQW AG YFR+E + N+Q S RHLS++ DG K+FE +
Sbjct: 487 SRFVMHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLSFVGSRYDGAKKFEAIS 546
Query: 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLR 179
+ +HLRTFLP+ +L+Y I+ +L KLQ LR SL GY I LP +IGDL++LR
Sbjct: 547 EFKHLRTFLPLMAPYVGYSYLSYHIINQLLPKLQNLRVLSLSGYRIVYLPQTIGDLKHLR 606
Query: 180 YLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEM 239
YL+LS T++R+LP S++ LYNL +LLLE+C LK L D G L L HL + LE M
Sbjct: 607 YLDLSCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLFNLRHLNIFGSNLLEGM 666
Query: 240 PVGIGRLTSLQTLCNFVVGKG-SGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLD 298
P+ IG L+SLQTL NFVVGK S +REL L HL GTL ISKLENV +A+++ L
Sbjct: 667 PLSIGNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISKLENVTKAQEARDSYLY 726
Query: 299 GKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDS 358
GK++L E+++ W S++ + S++ E + +VLNML+P+ L++ + YGGTKFPTW GD
Sbjct: 727 GKQDLNEVVMEW--SSNLNESQDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDP 784
Query: 359 SFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLET 418
SFSNLV L FENCD C +LP VGQLP LK L + GM+ VK +G EFYG PF LET
Sbjct: 785 SFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLET 844
Query: 419 LRFEDMQEWEDWIPLRSGQGV-EGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEE 477
L FEDM W +WIPL GV E F L +L I+RC L P+HLP+L+ LVI GC
Sbjct: 845 LHFEDMPRWVNWIPL----GVNEAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWN 900
Query: 478 LLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKI------------------- 518
++VSV++LP LC + GCK+V +S+ G + KI
Sbjct: 901 MVVSVSNLPMLCVLVIEGCKRVECESSVGFGSPYSMAFSKISEFGNATAGLMHGVSKVEY 960
Query: 519 -EIRECDALKSLPEAWMCGTN--SSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNI 575
+I + + L +L E G + L ++SI C +L A P LK + I C +
Sbjct: 961 LKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKSCSGL 1020
Query: 576 RTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE 635
++L E + S + L+ + + RC ++ S G LP L +LEIS C L+
Sbjct: 1021 KSLLPEGTLHSRENAC-------LERLCVVRCDSMKSIARGQLP-TTLKKLEISHCMNLQ 1072
Query: 636 AL---------PKGLHN-------LTSLQELTIGRGVELPSLKEDG-------------- 665
+ G+H+ T LQ L I L +L G
Sbjct: 1073 CVLDEGEGSSSSSGMHDEDINNRSKTHLQYLDIKSCPSLTTLTSSGKLPATLTHLLLREC 1132
Query: 666 -----------LPTNLQSLTIEG------------------NMEIW-----KSMIERGRG 691
LP LQ L I+ ++IW KS+ E
Sbjct: 1133 PKLMCLSSTGKLPAALQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPE---D 1189
Query: 692 FHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIV 751
H S LRQ I C SFP A LP++L L I NL+ L + +
Sbjct: 1190 LHNLSKLRQFLIFWC-QSFSSFP----------AAGLPSNLRVLGIKNCKNLKALPNGMR 1238
Query: 752 DLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDI 784
+L +L L + P++GLP++L++L++
Sbjct: 1239 NLTSLQKLDISHRLDSLPSPQEGLPTNLIELNM 1271
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449872|ref|XP_002265429.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 351/905 (38%), Positives = 492/905 (54%), Gaps = 114/905 (12%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
AYCS+FPKDY FE E+++LLW A G LD + G E GRK F L RSF QQ N+
Sbjct: 434 AYCSIFPKDYVFEREKLVLLWMAEGFLDGSKRGETIEQFGRKCFNSLLLRSFFQQYDNND 493
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
S+F+MHDLI+DLAQ+ +G+ FR+E V +Q S+ +RH SY ++ K +
Sbjct: 494 SQFVMHDLIHDLAQFTSGKFCFRLE----VEQQNQISKEIRHSSYTWQHFKVFKEAKLFL 549
Query: 121 DIQHLRTFLPVTLSNS--SRGHLAYSILPKLFKLQR-LRAFSLRGYHIFELPDSIGDLRY 177
+I +LRTFLP+ L ++ S +L+ I L R LR SL Y I ELP SI +L++
Sbjct: 550 NIYNLRTFLPLPLYSNLLSTLYLSKEISHCLLSTLRCLRVLSLSHYDIKELPHSIENLKH 609
Query: 178 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE 237
LRYL+LS T IRTLPES+ L+NL +L+L +C L L MG L L HLK K LE
Sbjct: 610 LRYLDLSHTRIRTLPESITTLFNLQTLMLSECRFLVDLPTKMGRLINLRHLKIDGIK-LE 668
Query: 238 EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQL 297
MP+ + R+ +L+TL FVVGK +GS + EL+ L+HL GTL I KL+NV D DA E+ +
Sbjct: 669 RMPMEMSRMKNLRTLTAFVVGKHTGSRVGELRDLSHLTGTLAIFKLQNVADARDALESNM 728
Query: 298 DGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGD 357
GK+ L +L L W D + + ++ VL L+PH NL++ I Y G KFP+W G+
Sbjct: 729 KGKECLDKLELNW--EDDNAIAGDSHDAASVLEKLQPHSNLKELSIGCYYGAKFPSWLGE 786
Query: 358 SSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGN--DSPIPFLC 415
SF N+V L+ NC C +LP +GQL SL++L++ ++++G EFYGN S PF
Sbjct: 787 PSFINMVRLQLSNCKNCASLPPLGQLRSLQNLSIVKNDVLQKVGQEFYGNGPSSFKPFGS 846
Query: 416 LETLRFEDMQEWEDWIPLRSGQGVEG--FPKLRELHILRCSKLKGTFPEHLPALEMLVIE 473
L+TL F+++ WE+W GVEG FP L EL I C KLKG P+HLP L LVI
Sbjct: 847 LQTLVFKEISVWEEW----DCFGVEGGEFPHLNELRIESCPKLKGDLPKHLPVLTSLVIL 902
Query: 474 GCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQN--------------------S 513
C +L+ + P++ K C +VV +S P +
Sbjct: 903 ECGQLVCQLPEAPSIQKLNLKECDEVVLRSVVHLPSITELEVSNICSIQVELPTILLKLT 962
Query: 514 VLKKIEIRECDALKSLPEAW----------------------MCGTNSSLEDMSIRQCHS 551
L+K+ I+EC +L SLPE M N+SL+ + I C S
Sbjct: 963 SLRKLVIKECQSLSSLPEMGLPPMLETLRIEKCHILETLPEGMTLNNTSLQSLYIEDCDS 1022
Query: 552 LTYI--------------AAVQLPLS----------LKNLLIH-KCDNIRTLTVE----- 581
LT + V+LPL L +L I CD++ + +
Sbjct: 1023 LTSLPIISSLKSLEIKQCGKVELPLPEETSHNYYPWLTSLHIDGSCDSLTSFPLAFFTKL 1082
Query: 582 -------EGIQSSSSRSGLHN--LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCK 632
E ++S GL N L L+ I I C NLVSFP+GGLP + L LEI C
Sbjct: 1083 ETLYIGCENLESFYIPDGLRNMDLTSLRRIEIYDCPNLVSFPQGGLPASNLRNLEIWVCM 1142
Query: 633 RLEALPKGLHNL-TSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGR- 690
+L++LP+ +H L TSL+ LTI E+ S E GLPTNL SL I + +K M R
Sbjct: 1143 KLKSLPQRMHTLLTSLENLTIDDCPEIVSFPEGGLPTNLSSLYI---WDCYKLMESRKEW 1199
Query: 691 GFHRFSSLRQLTIIN-CDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS- 748
G SL +L I ++ + SF + L LP++L SL I FP+L+ L +
Sbjct: 1200 GLQTLPSLGRLVIAGGTEEGLESFSEEW--------LLLPSTLFSLEIRSFPDLKSLDNL 1251
Query: 749 SIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCRKDGGQYWDLLTHI 808
+ +L +L L + DC KLK FP++GLP+SL L+I CP+++++C++D G+ W + HI
Sbjct: 1252 GLENLTSLERLVISDCVKLKSFPKQGLPASLSILEIHRCPVLKKRCQRDKGKEWRKIAHI 1311
Query: 809 PDVTI 813
P + +
Sbjct: 1312 PRIKM 1316
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495083|ref|XP_003634908.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 340/854 (39%), Positives = 486/854 (56%), Gaps = 76/854 (8%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
AYCS+FPKDY+FE+ ++LLW A GLL + ED G F L +RSF QQ+S+
Sbjct: 441 AYCSIFPKDYKFEKRNLVLLWMAEGLLGGSKREETIEDYGNMCFDNLLSRSFFQQASDDE 500
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYI-PEYCDGVKRFEDL 119
S FLMHDLI+DLAQ+ +G+ ++ K+ S+ RH SY+ E + K+F+
Sbjct: 501 SIFLMHDLIHDLAQFVSGKFCSSLDD----EKKSQISKQTRHSSYVRAEQFELSKKFDPF 556
Query: 120 YDIQHLRTFLPV-TLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRY 177
Y+ +LRTFLPV T R L+ + L L+ LR SL YHI ELP SIG L++
Sbjct: 557 YEAHNLRTFLPVHTGHQYGRIFLSKKVSDLLLPTLKCLRVLSLAHYHIVELPHSIGTLKH 616
Query: 178 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE 237
LRYL+LS T IR LPES+ L+NL +L+L +C L L +MG L L HL +NT L+
Sbjct: 617 LRYLDLSRTSIRRLPESITNLFNLQTLMLSNCISLTHLPTEMGKLINLQHLDITNT-ILK 675
Query: 238 EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQL 297
EMP+G+ L L+TL FVVG+ G+ ++EL+ ++HL G L ISKL+NV D D EA L
Sbjct: 676 EMPMGMKGLKRLRTLTAFVVGEDRGAKIKELRDMSHLGGRLCISKLQNVVDAMDVFEANL 735
Query: 298 DGKKNLRELLLRWTLSTDG-SSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFG 356
GK+ L EL+++W DG +++R+ + E VL L+PH NL++ I Y G KFP W
Sbjct: 736 KGKERLDELVMQW----DGEATARDLQKETTVLEKLQPHNNLKELTIEYYCGEKFPNWLS 791
Query: 357 DSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGN---DSPIPF 413
+ SF+N+V+++ +C C++LPS+GQL SLK L++ + V+++G EFYGN S PF
Sbjct: 792 EHSFTNMVSMQLHDCKNCSSLPSLGQLGSLKELSIMRIDGVQKVGQEFYGNIGSSSFKPF 851
Query: 414 LCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIE 473
LE LRFE+M EWE+W+ + +E FP L+EL+I +C KLK P+HLP L L I
Sbjct: 852 EALEILRFEEMLEWEEWV----CREIE-FPCLKELYIKKCPKLKKDLPKHLPKLTKLEIR 906
Query: 474 GCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPG----------------SQNSVLKK 517
C++L+ + P++ K C VV +SA Q L +
Sbjct: 907 ECKQLVCCLPMAPSIRKLELEKCDDVVVRSAGSLTSLASLDISNVCKIPDELGQLHSLVE 966
Query: 518 IEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRT 577
+ + C LK +P + +SL+D+ + C SL + LP L++L I C + +
Sbjct: 967 LYVLFCPELKEIPP--ILHNLTSLKDLKVENCESLASFPEMALPPMLESLQIFSCPILES 1024
Query: 578 LTVEEGIQSSSS------------------RSGLH--NLRQLQEISIRRCGNLVSFPEGG 617
L EG+ +S + R GLH +L LQ + I C NLVSFP GG
Sbjct: 1025 LP--EGMIASFTKLETLHLWNCTNLESLYIRDGLHHMDLTSLQSLDIWNCPNLVSFPRGG 1082
Query: 618 LPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGV-ELPSLKEDGLPTNLQSLTIE 676
LP L L I +C++L++LP+G+H L + EL G E+ S E GLPTNL SL I
Sbjct: 1083 LPTPNLRWLGIYNCEKLKSLPQGMHTLLTSLELLTIEGCPEIDSFPEGGLPTNLSSLYIV 1142
Query: 677 GNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLW 736
++ +E G LR L I + + FP ++R LP++LTSL
Sbjct: 1143 NCNKLLACRME--WGLQTLPFLRTLQIGGYEKE--RFP----EERF-----LPSTLTSLE 1189
Query: 737 ISGFPNLERLSSS-IVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCR 795
I GFPNL+ L + + L +L +L + C LK FP++GLPSSL +L I CPL+ ++C+
Sbjct: 1190 IRGFPNLKSLDNKGLQHLTSLETLEIWKCGNLKSFPKQGLPSSLSRLYIGECPLLRKRCQ 1249
Query: 796 KDGGQYWDLLTHIP 809
+D G+ W ++HIP
Sbjct: 1250 RDKGKEWPKISHIP 1263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449961|ref|XP_002271133.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 351/903 (38%), Positives = 494/903 (54%), Gaps = 117/903 (12%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
AYCS+FPKD+EF++EE+IL W A GL+ + G E++G F L +RSF QQS+
Sbjct: 431 AYCSIFPKDHEFQKEELILFWVAQGLVGGLKGGEIMEEVGEACFHNLLSRSFFQQSARDE 490
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
S F+MHDLI+DLAQ+ + FR+E V KQ S+ RH SY E D K+F+ L+
Sbjct: 491 SLFVMHDLIHDLAQFISENFCFRLE----VGKQNHISKRARHFSYFREEFDVSKKFDPLH 546
Query: 121 DIQHLRTFLPVTLS-NSSRGHLAYSILPKLFKLQR-LRAFSLRGYHIFELPDSIGDLRYL 178
+ +LRTFLP+ + + S +L+ +L L R LR SL Y+I LPDS G+L++L
Sbjct: 547 ETNNLRTFLPLDMPLDVSTCYLSDKVLHNLLPTLRCLRVLSLSHYNITHLPDSFGNLKHL 606
Query: 179 RYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEE 238
RYLNLS T I+ LP+S+ L NL SL+L +C L KL +++G L L H S T ++E
Sbjct: 607 RYLNLSYTAIKELPKSIGTLLNLQSLILSNCASLTKLSSEIGELINLRHFDISET-NIEG 665
Query: 239 MPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLD 298
MP+GI RL L++L FVV K G+ + EL+ L+ L G L+I L+N+ + DA EA L
Sbjct: 666 MPIGINRLKDLRSLATFVVVKHGGARISELRDLSCLGGALSILNLQNIANANDALEANLK 725
Query: 299 GKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDS 358
KK++ L+L W S +S + + VL L+PH L++ I Y G KFP W GDS
Sbjct: 726 DKKDIENLVLSWDPSAIAGNS---DNQTRVLEWLQPHNKLKRLTIGYYCGEKFPNWLGDS 782
Query: 359 SFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPI---PFLC 415
SF NLV+LE +NC C++LPS+GQL SLK L + M V+++G EF N S PF
Sbjct: 783 SFMNLVSLEIKNCKSCSSLPSLGQLKSLKCLRIVKMDGVRKVGMEFCRNGSSSSFKPFGS 842
Query: 416 LETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGC 475
L TL F++M EWE+W GVE FP L+EL I+ C KLKG P+HLP L L I C
Sbjct: 843 LVTLVFQEMLEWEEW----DCSGVE-FPCLKELDIVECPKLKGDIPKHLPHLTKLEITKC 897
Query: 476 EEL----------------------LVSVTSLPALC---------------KFISGGCKK 498
+L L + SL ALC K IS K+
Sbjct: 898 GQLPSIDQLWLDKFKDVVPRKIPMELQHLHSLVALCLVDCPYLIELPPVLHKLIS--LKR 955
Query: 499 VVWKSAAGHPGSQN----SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTY 554
+V K S+L+ ++I++C+ L+SLPE M N+ L + ++ C SL
Sbjct: 956 LVIKKCPSLSSVSEMELPSMLEFLKIKKCNRLESLPEGMM-PNNNCLRSLIVKGCSSLRS 1014
Query: 555 IAAV------------QLPLSLKNLLIHKC-DNIRTLTVEEGIQSSS-----SRSGLHN- 595
+ V +L L L ++H C ++ TL ++ S S S + L N
Sbjct: 1015 LPNVTSLKFLEIRNCGKLELPLSQEMMHDCYPSLTTLEIKNSCDSLSLFSLGSFTKLENL 1074
Query: 596 ---------------------LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL 634
L LQ I I C NLVSFP+GGLP L L I CK+L
Sbjct: 1075 AFRKYANLEAIHIPDELHHVDLTSLQVIVIWDCPNLVSFPQGGLPAPNLRMLLIGDCKKL 1134
Query: 635 EALPKGLHNL-TSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFH 693
++LP+ +H L TSLQ+L IG E+ S + GLPT+L LTI ++ + +E G
Sbjct: 1135 KSLPQQMHTLITSLQDLKIGYCPEIDSFPQGGLPTSLSRLTISDCYKLMQCRME--WGLQ 1192
Query: 694 RFSSLRQLTIINCDDD--MVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SI 750
SLR+L I + D++ + SFP K LP++L+ + I GFPNL+ L + I
Sbjct: 1193 TLPSLRKLEIQDSDEEGKLESFPEK---------WLLPSTLSFVGIYGFPNLKSLDNMGI 1243
Query: 751 VDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCRKDGGQYWDLLTHIPD 810
DL +L +L + C LK FP++GLP+SL L I CPL++++C++D G+ W + HIP
Sbjct: 1244 HDLNSLETLKIRGCTMLKSFPKQGLPASLSCLKIRNCPLLKKRCQRDKGKEWPKIFHIPS 1303
Query: 811 VTI 813
+ +
Sbjct: 1304 IVL 1306
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464007|ref|XP_002264663.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 348/923 (37%), Positives = 499/923 (54%), Gaps = 134/923 (14%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
YC+ FP+DYEF E E++LLW A GL+ E EDLG ++FREL +RSF QQS N
Sbjct: 430 VYCATFPQDYEFRETELVLLWMAEGLIQPLEGNKQMEDLGAEYFRELVSRSFFQQSGNGG 489
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
S+F+MHDLI+DLAQ A ++ F +E E NK S + RH+S+ + + K+FE L
Sbjct: 490 SQFVMHDLISDLAQSVAAQLCFNLEDKLEHNKNHIISRDTRHVSFNRCFDEIFKKFEALN 549
Query: 121 DIQHLRTF--LPVTLSN-SSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLR 176
+++ LRTF LP+ + HL + LF KL+ LR SL GY I ELP+SIGDL+
Sbjct: 550 EVEKLRTFIALPIYVGPFFGPCHLTSKVFSCLFPKLRYLRVLSLSGYWIKELPNSIGDLK 609
Query: 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSL 236
+LRYLN S T I LPES+++LYNL +L+L C L L +GNL L HL ++T+SL
Sbjct: 610 HLRYLNFSNTFIERLPESISELYNLQALILCQCRYLAMLPKSIGNLVNLRHLDITDTRSL 669
Query: 237 EEMPVGIGRLTSLQTLCNFVVGK-GSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEA 295
++MP I L +LQTL F+V K S S ++ELK L+++ GTL+I L NV D DA +
Sbjct: 670 KKMPPHISNLVNLQTLSKFMVEKNNSSSSIKELKKLSNIRGTLSILGLHNVADAQDAMDV 729
Query: 296 QLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWF 355
L GK N+++L + W D + + + E++ VL +L+PH+NLE+ IS YGG FP+W
Sbjct: 730 DLKGKHNIKDLTMEWGYDFDDTRNEKNEMQ--VLELLQPHKNLEKLTISFYGGGIFPSWI 787
Query: 356 GDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLC 415
G+ SFS +V L + C CT LPS+GQL SLK+L + GMS +K + EFYG + F
Sbjct: 788 GNPSFSLMVQLCLKGCRNCTLLPSLGQLSSLKNLRIQGMSGIKNIDVEFYGPNVE-SFQS 846
Query: 416 LETLRFEDMQEWEDWIPLRSGQGVEG---FPKLRELHILRCSKLKGTFPEHLPALEMLVI 472
LE+L F DM EWE+W RS ++ FP+LREL ++ C KL P+ LP L L +
Sbjct: 847 LESLTFSDMPEWEEW---RSPSFIDEERLFPRLRELKMMECPKLIPPLPKVLP-LHELKL 902
Query: 473 EGC-EELLVSVTS-LPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLP 530
E C EE+L + + +L G CK+V W G LK++++R CD L SL
Sbjct: 903 EACNEEVLGRIAADFNSLAALEIGDCKEVRWLRLEKLGG-----LKRLKVRGCDGLVSLE 957
Query: 531 EAWMCGTNSSLE---------------------DMSIRQCHSLTYIAAVQLPLSLKNLLI 569
E + + LE ++ IR+C L I P L+ L +
Sbjct: 958 EPALPCSLEYLEIEGCENLEKLPNELQSLRSATELVIRECPKLMNILEKGWPPMLRELRV 1017
Query: 570 HKCDNIRTLTVE------EGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKL 623
+ C I+ L + +G ++SS L+ + I C +L+ FP+G LP + L
Sbjct: 1018 YDCKGIKALPGDWMMMRMDGDNTNSSCV-------LERVEIWWCPSLLFFPKGELPTS-L 1069
Query: 624 TRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIE--GNMEI 681
RL I C+ +++LP+G+ +L++L GR L S LP+ L+ L+I GN+E+
Sbjct: 1070 KRLIIRFCENVKSLPEGIMRNCNLEQLYTGRCSSLTSFPSGELPSTLKRLSIWNCGNLEL 1129
Query: 682 ----------------------------------------WKSMIERGRGFHRFSSLRQL 701
+S+ E G GF +LR +
Sbjct: 1130 PPDHMPNLTYLNIEGCKGLKHHHLQNLTSLELLYIIGCPSLESLPEGGLGFA--PNLRFV 1187
Query: 702 TIINCD---------------------------DDMVSFPPKADDKRLGTALPLPASLTS 734
TI+NC+ ++VSF DD L LP SLT
Sbjct: 1188 TIVNCEKLKTPLSEWGLNRLLSLKDLTIAPGGYQNVVSFSHGHDD----CHLRLPTSLTD 1243
Query: 735 LWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYF-PEKGLPSSLLQLDIWGCPLIEE 792
L I F NLE ++S + L +L LY+ +CPKL+ F P++GLP++L L+IWGCP+IE+
Sbjct: 1244 LHIGNFQNLESMASLPLPTLVSLERLYIRNCPKLQQFLPKEGLPATLGWLEIWGCPIIEK 1303
Query: 793 KCRKDGGQYWDLLTHIPDVTIYR 815
+C K+GG+ W + HIP + I R
Sbjct: 1304 RCLKNGGEDWPHIAHIPVIDIGR 1326
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495896|ref|XP_003635111.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 342/846 (40%), Positives = 480/846 (56%), Gaps = 69/846 (8%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGN-PSEDLGRKFFRELRARSFIQQSSNS 59
AYC+LFP+DY+FE++E+ILLW A GL+ E EDLG +F EL +R F Q SSNS
Sbjct: 440 AYCALFPRDYKFEQKELILLWMAEGLIHEAEEEKCQMEDLGADYFDELLSRCFFQPSSNS 499
Query: 60 ISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDL 119
S+F+MHDLINDLAQ A EI F +E + SE RHLS+I D K+FE L
Sbjct: 500 KSQFIMHDLINDLAQDVATEICFNLENIHKT------SEMTRHLSFIRSEYDVFKKFEVL 553
Query: 120 YDIQHLRTF--LPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLR 176
+ LRTF LPVT++N + +L+ +L L KL +LR SL GY I ELP+SIGDL+
Sbjct: 554 NKPEQLRTFVALPVTVNNKMKCYLSTKVLHGLLPKLIQLRVLSLSGYEINELPNSIGDLK 613
Query: 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSL 236
+LRYLNLS T+++ LPE+V+ LYNL SL+L +C L KL + NL HL S + L
Sbjct: 614 HLRYLNLSHTKLKWLPEAVSSLYNLQSLILCNCMELIKLPICIMNLTNFRHLDISGSTML 673
Query: 237 EEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQ 296
EEMP +G L +LQTL F + K +GS ++ELK L +L G L I LENV D DA
Sbjct: 674 EEMPPQVGSLVNLQTLSMFFLSKDNGSRIKELKNLLNLRGELAIIGLENVSDPRDAMYVN 733
Query: 297 LDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFG 356
L N+ +L++ W S D +SR +VL L+PH++L++ I+ YGG+KFP W G
Sbjct: 734 LKEIPNIEDLIMVW--SEDSGNSRNESTVIEVLKWLQPHQSLKKLEIAFYGGSKFPHWIG 791
Query: 357 DSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCL 416
D SFS +V LE +C CT+LP++G LP LK L + GM++VK +G FYG D+ PF L
Sbjct: 792 DPSFSKMVCLELTDCKNCTSLPALGGLPFLKDLVIEGMNQVKSIGDGFYG-DTANPFQSL 850
Query: 417 ETLRFEDMQEWEDWIPLR--------------------SGQGVEGFPKLRELHILRCSKL 456
E LRFE+M EW +W+ R G G+E LR L I C +
Sbjct: 851 EYLRFENMAEWNNWLAQRLMVLEDLGINECDELACLRKPGFGLENLGGLRRLWINGCDGV 910
Query: 457 KGTFPEHLPA-LEMLVIEGC---EELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQN 512
+ LP L+ L ++GC E+L ++ +L +L I C K+V G P
Sbjct: 911 VSLEEQGLPCNLQYLEVKGCSNLEKLPNALYTLASLAYTIIHNCPKLVSFPETGLP---- 966
Query: 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKC 572
+L+ + +R C+ L++LP+ M + +LE + IR C SL +LP++LK L+I C
Sbjct: 967 PMLRDLSVRNCEGLETLPDGMMINS-CALERVEIRDCPSLIGFPKRELPVTLKMLIIENC 1025
Query: 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCK 632
+ + +L EGI + +N +L+++ + C +L S P G P + L L I C
Sbjct: 1026 EKLESLP--EGIDN-------NNTCRLEKLHVCGCPSLKSIPRGYFP-STLETLSIWGCL 1075
Query: 633 RLEALPKG-LHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEG--NMEIWKSMIERG 689
+L+++P L NLTSLQ L I ++ S E L NL++L+I NM W G
Sbjct: 1076 QLQSIPGNMLQNLTSLQFLHICNCPDVVSSPEAFLNPNLKALSITDCENMR-WPL---SG 1131
Query: 690 RGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS- 748
G +SL +L I D++SF G+ L LP SLT L + NL+ ++S
Sbjct: 1132 WGLRTLTSLDELGIHGPFPDLLSFS--------GSHLLLPTSLTYLGLVNLHNLKSVTSM 1183
Query: 749 SIVDLQNLASLYLGDCPKLKYF-PEKGLPSSLLQLDIWGCPLIEEKCRKDGGQYWDLLTH 807
+ L +L SL CPKL+ F P++GLP +L +L IW CP+++++C K G W + H
Sbjct: 1184 GLRSLMSLKSLEFYSCPKLRSFVPKEGLPPTLARLVIWECPILKKRCLKGKGNDWPKIGH 1243
Query: 808 IPDVTI 813
IP V I
Sbjct: 1244 IPYVEI 1249
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775060|emb|CAN77204.1| hypothetical protein VITISV_014782 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 347/919 (37%), Positives = 498/919 (54%), Gaps = 127/919 (13%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
YC+ FP+DYEF+E E+ILLW A GL+ E EDLG ++FREL +RSF Q+S N
Sbjct: 434 VYCATFPQDYEFKETELILLWMAEGLIQPLEGNKQMEDLGAEYFRELVSRSFFQRSGNGG 493
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
S+F+MHDLI+DLAQ AG++ F +E E NK S + RH+SY + K+FE L
Sbjct: 494 SQFVMHDLISDLAQSVAGQLCFNLEDKLEHNKNHIISRDTRHVSYNRCKYEIFKKFEALN 553
Query: 121 DIQHLRTFLPVTL-SNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYL 178
+++ LRTF+ + + S +L + LF KL+ LRA SL GY I ELP+S+GDL++L
Sbjct: 554 EVEKLRTFIALPIYGGPSWCNLTSKVFSCLFPKLRYLRALSLSGYSIKELPNSVGDLKHL 613
Query: 179 RYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEE 238
RYLNLS T I LPES+++LYNL +L+L C L L +GNL L HL ++T+ L++
Sbjct: 614 RYLNLSRTAIERLPESISELYNLQALILCQCRYLAMLPKSIGNLVDLRHLDITDTRMLKK 673
Query: 239 MPVGIGRLTSLQTLCNFVVGK-GSGSGLREL-KLLTHLHGTLNISKLENVKDVGDAKEAQ 296
MP +G L +LQTL F+V K S S ++EL KL++ + GTL+IS L NV D DA +
Sbjct: 674 MPPHLGNLVNLQTLSKFIVEKNNSSSSIKELKKLMSKIRGTLSISGLHNVVDAQDAMDVD 733
Query: 297 LDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFG 356
L GK N+++L + W D +R + E VL +L+PH+NLE+ IS YGG FP+W G
Sbjct: 734 LKGKHNIKDLTMEW--GNDFDDTRNEQNEMQVLELLQPHKNLEKLTISFYGGGIFPSWIG 791
Query: 357 DSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCL 416
+ SFS +V L + C CT LPS+GQL SLK+L + GMS +K + EFYG + F L
Sbjct: 792 NPSFSLMVQLCLKGCRNCTLLPSLGQLSSLKNLRIQGMSGIKNIDVEFYGPNVE-SFQSL 850
Query: 417 ETLRFEDMQEWEDWIPLRSGQGVEG---FPKLRELHILRCSKLKGTFPEHLPALEMLVIE 473
E+L F DM EWE+W RS ++ FP+LREL + C KL P+ LP L L +E
Sbjct: 851 ESLTFSDMPEWEEW---RSPSFIDEERLFPRLRELKMTECPKLIPPLPKVLP-LHELKLE 906
Query: 474 GC-EELLVSVTS-LPALCKFISGGCKKVVWKSAAGHPGSQNSV----------------- 514
C EE+L + + +L G CK+V W G ++
Sbjct: 907 ACNEEVLGRIAADFNSLAALEIGDCKEVRWLRLEKLGGLKSLTVCGCDGLVSLEEPALPC 966
Query: 515 -LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCD 573
L+ +EI C+ L+ LP + S ++ IR+C L I P L+ L + C+
Sbjct: 967 SLEYLEIEGCENLEKLPNELQ--SLRSATELVIRRCPKLMNILEKGWPPMLRKLEVSDCE 1024
Query: 574 NIRTLTVE------EGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLE 627
I+ L + +G ++SS L+ + IRRC +L+ FP+G LP + L +L
Sbjct: 1025 GIKALPGDWMMMRMDGDNTNSSCV-------LERVEIRRCPSLLFFPKGELPTS-LKQLI 1076
Query: 628 ISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIE--GNMEI---- 681
I C+ +++LP+G+ +L++L IG L S L + L+ L I GN+E+
Sbjct: 1077 IRYCENVKSLPEGIMRNCNLEQLYIGGCSSLTSFPSGELTSTLKRLNIWNCGNLELPPDH 1136
Query: 682 ------------------------------------WKSMIERGRGFHRFSSLRQLTIIN 705
+S+ E G GF +LR +TI+N
Sbjct: 1137 MPNLTYLNIEGCKGLKHHHLQNLTSLECLYITGCPSLESLPEGGLGFA--PNLRFVTIVN 1194
Query: 706 CD---------------------------DDMVSFPPKADDKRLGTALPLPASLTSLWIS 738
C+ ++VSF DD L LP SLT L I
Sbjct: 1195 CEKLKTPLSEWGLNRLLSLKVLTIAPGGYQNVVSFSHGHDD----CHLRLPTSLTDLHIG 1250
Query: 739 GFPNLERLSS-SIVDLQNLASLYLGDCPKLKYF-PEKGLPSSLLQLDIWGCPLIEEKCRK 796
F NLE ++S + L +L LY+ +CPKL+ F P++GLP++L L+IWGCP+IE++C K
Sbjct: 1251 NFQNLESMASLPLPTLVSLERLYIRNCPKLQQFLPKEGLPATLGWLEIWGCPIIEKRCLK 1310
Query: 797 DGGQYWDLLTHIPDVTIYR 815
+GG+ W + HIP + I R
Sbjct: 1311 NGGEDWPHIAHIPVIDIGR 1329
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495052|ref|XP_002267579.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 341/907 (37%), Positives = 482/907 (53%), Gaps = 117/907 (12%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
YCS+FPKDY FE+E+++LLW A G LD + E+ G F L +RSF Q+ +
Sbjct: 434 TYCSIFPKDYVFEKEKLVLLWMAEGFLDSSKREGTVEEFGNICFNNLLSRSFFQRYYYNE 493
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
S F+MHDLI+DLAQ+ +G R+E KQ S+ +RH SY + K+F+
Sbjct: 494 SVFVMHDLIHDLAQFISGRFCCRLED----EKQNKISKEIRHFSYSWQQGIASKKFKSFL 549
Query: 121 DIQHLRTFLPVTLSNSSRGHLAYSILPK---LFKLQRLRAFSLRGYHIFELPDSIGDLRY 177
D +L+TFLP +L + S L L LR SL Y I +LP SIG+L++
Sbjct: 550 DDHNLQTFLPQSLGTHGIPNFYLSKEVSHCLLSTLMCLRVLSLTYYGIKDLPHSIGNLKH 609
Query: 178 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE 237
LRYL+LS +RTLP+S+ L+NL +L+L C+ L +L MG L L HLK TK LE
Sbjct: 610 LRYLDLSHNLVRTLPKSITTLFNLQTLMLSWCEYLVELPTKMGRLINLRHLKIDGTK-LE 668
Query: 238 EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQL 297
MP+ + R+ +L+TL FVV K +GS + EL+ L+HL GTL I KL+NV D DA E+ +
Sbjct: 669 RMPMEMSRMKNLRTLTTFVVSKHTGSRVGELRDLSHLSGTLAIFKLQNVVDARDALESNM 728
Query: 298 DGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGD 357
K+ L +L L W D + + +++ VL L+PH+NL++ I Y G KFP+W GD
Sbjct: 729 KRKECLDKLELNW--EDDNAIAGDSQDAASVLEKLQPHDNLKELSIGCYYGAKFPSWLGD 786
Query: 358 SSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGN--DSPIPFLC 415
SF N+V+L+ NC C +LP +GQL SL++L++ ++++G EFYGN S PF
Sbjct: 787 PSFINMVSLQLSNCKNCASLPPLGQLRSLQNLSIVKNDVLRKVGQEFYGNGPSSFKPFGS 846
Query: 416 LETLRFEDMQEWEDWIPLRSGQGVEG--FPKLRELHILRCSKLKGTFPEHLPALEMLVIE 473
L+TL F++M EWE+W GVEG FP L ELHI C+KLKG P+HLP L LVI
Sbjct: 847 LQTLVFKEMSEWEEW----DCFGVEGGEFPCLNELHIECCAKLKGDLPKHLPLLTNLVIL 902
Query: 474 GCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPG--------------------SQNS 513
C +L+ + P++ C KVV +SA P + +
Sbjct: 903 ECGQLVCQLPKAPSIQHLNLKECDKVVLRSAVHMPSLTELEVSNICSIQVELPPILHKLT 962
Query: 514 VLKKIEIRECDALKSLPEAWM-----------CG-----------TNSSLEDMSIRQCHS 551
L+K+ I+EC L SLPE + CG N+ L+ +S +C S
Sbjct: 963 SLRKLVIKECQNLSSLPEMGLPSMLEILEIKKCGILETLPEGMIQNNTRLQKLSTEECDS 1022
Query: 552 LTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE----------------------------- 582
LT ++ SLK+L I +C + EE
Sbjct: 1023 LTSFPSIS---SLKSLEIKQCGKVELPLPEETTHSYYPWLTSLHIDGSCDSLTYFPLAFF 1079
Query: 583 ------------GIQSSSSRSGLHN--LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEI 628
++S GLHN L L I I+ C NLVSFP+GGLP + L +L I
Sbjct: 1080 TKLETLYIWGCTNLESLDIPDGLHNMDLTSLPSIHIQDCPNLVSFPQGGLPASNLRQLRI 1139
Query: 629 SSCKRLEALPKGLHN-LTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIE 687
C +L++LP+ +H LTSL++L I E+ S E GLPTNL SL I ++ +S +
Sbjct: 1140 GYCNKLKSLPQRMHTLLTSLEDLEIYDCPEIVSFPEGGLPTNLSSLEIWNCYKLMES--Q 1197
Query: 688 RGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLS 747
+ G SLR+L+I D + L LP++L SL I FP+L+ L
Sbjct: 1198 KEWGIQTLPSLRKLSI---SGDTEE----GSESFFEEWLLLPSTLISLQILNFPDLKSLD 1250
Query: 748 S-SIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCRKDGGQYWDLLT 806
+ + +L +L +L L C KLK FP +GLPSSL L I CPL+ ++C++D G+ W +
Sbjct: 1251 NLRLQNLTSLQTLRLYKCFKLKSFPTQGLPSSLSILLIRDCPLLIKRCQRDKGKEWPKIA 1310
Query: 807 HIPDVTI 813
HIP V +
Sbjct: 1311 HIPYVVM 1317
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 815 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.581 | 0.332 | 0.408 | 6e-115 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.683 | 0.528 | 0.39 | 2.6e-95 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.797 | 0.360 | 0.263 | 3e-24 | |
| TAIR|locus:504956483 | 847 | AT3G46730 [Arabidopsis thalian | 0.307 | 0.296 | 0.286 | 4.8e-15 | |
| TAIR|locus:2034770 | 894 | SUMM2 "AT1G12280" [Arabidopsis | 0.496 | 0.453 | 0.262 | 1.2e-14 | |
| TAIR|locus:2031366 | 898 | AT1G63350 "AT1G63350" [Arabido | 0.266 | 0.241 | 0.275 | 3.7e-14 | |
| TAIR|locus:2205824 | 1384 | AT1G27170 [Arabidopsis thalian | 0.647 | 0.381 | 0.266 | 4.7e-14 | |
| TAIR|locus:504956184 | 1017 | AT1G58807 "AT1G58807" [Arabido | 0.358 | 0.287 | 0.248 | 1e-13 | |
| TAIR|locus:2827038 | 1017 | AT1G59124 "AT1G59124" [Arabido | 0.358 | 0.287 | 0.248 | 1e-13 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.373 | 0.289 | 0.267 | 1.1e-13 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 6.0e-115, Sum P(2) = 6.0e-115
Identities = 200/490 (40%), Positives = 280/490 (57%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
A CS+FPK + F+ EE++LLW A+ LL S ED+G + +L A+SF Q+ ++
Sbjct: 423 ALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITM 482
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLY 120
+ F+MHDL+NDLA+ +G+ FR+E + N + RH S+ CD F +
Sbjct: 483 TSFVMHDLMNDLAKAVSGDFCFRLE---DDNIPE-IPSTTRHFSFSRSQCDASVAFRSIC 538
Query: 121 DIQHLRTFLPVTLSNSSRG-HLAYSIL-PKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL 178
+ LRT LP S L +L P L L LR SL Y I LP S+ L+ L
Sbjct: 539 GAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLL 598
Query: 179 RYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEE 238
RYL+LS T+I+ LPE V L NL +LLL +C L L + L L L T L E
Sbjct: 599 RYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVE 657
Query: 239 MPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLD 298
MP GI +L SLQ L NFV+G+ SG+GL ELK L+HL GTL IS+L+NV +AK+A L
Sbjct: 658 MPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLK 717
Query: 299 GKKNLRELLLRWTLS----TDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTW 354
K L L+L+WT+ GS + A +K+VL ML+PH +L+ FCI Y G FP W
Sbjct: 718 RKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKW 777
Query: 355 FGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFY---GNDSPI 411
GDSSF + ++ +C++C +LP VGQLPSLK+L++ + ++++G +F+ N +
Sbjct: 778 LGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGV 837
Query: 412 PFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLV 471
PF L+ L+F M W++WI G+ FP L++L I RC L+ FPE LP+ +
Sbjct: 838 PFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFPEGLPSSTEVT 895
Query: 472 IEGCEELLVS 481
I C VS
Sbjct: 896 ISDCPLRAVS 905
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 234/600 (39%), Positives = 341/600 (56%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSI 60
AYCS+FPK + FE+++++LLW A G L S E+LG ++F EL +RS +Q++
Sbjct: 431 AYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK--- 487
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPE-YCDGVKRFEDL 119
+R++MHD IN+LAQ+A+GE + E + K Q SE R+LSY+ + Y + ++ FE L
Sbjct: 488 TRYIMHDFINELAQFASGEFSSKFE---DGCKLQ-VSERTRYLSYLRDNYAEPME-FEAL 542
Query: 120 YDIQHLRTFLPVTLSNSSRGH-LAYSILPKLFK-LQRLRAFSLRGYHIFELP-DSIGDLR 176
+++ LRTFLP++L+NSSR L + KL L RLR SL Y I LP D ++
Sbjct: 543 REVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNIS 602
Query: 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSL 236
+ R+L+LS TE+ LP+S+ +YNL +LLL C LK+L D+ NL L +L TK L
Sbjct: 603 HARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK-L 661
Query: 237 EEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQ 296
+MP GRL SLQTL F V GS + EL L LHG L I +L+ V DV DA EA
Sbjct: 662 RQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEAN 721
Query: 297 LDGKKNLRELLLRWTLSTDGSSSR----EAEIEKDVLNMLKPHENLEQFCISGYGGTKFP 352
L+ KK+LRE+ W + S + + E +V L+PH ++E+ I Y G +FP
Sbjct: 722 LNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFP 781
Query: 353 TWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPI- 411
W D SFS +V + C CT+LPS+GQLP LK L + GM ++ +G +FY +D +
Sbjct: 782 DWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLR 841
Query: 412 -----PFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPA 466
PF LETLRF+++ +W++W+ +R +G + FP L++L ILRC +L GT P LP+
Sbjct: 842 DQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPS 900
Query: 467 LEMLVIEGCEEL-------LVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIE 519
L L I C L S +L L I C +V K H + L K+E
Sbjct: 901 LISLHIYKCGLLDFQPDHHEYSYRNLQTLS--IKSSCDTLV-KFPLNHFAN----LDKLE 953
Query: 520 IRECDALKSLP--EAWMCGTNSSLEDMSIRQCHSLTYIAAVQ-LPLSLKNLLIHKCDNIR 576
+ +C +L SL + G N+ L ++ I C +L + + LP +L+ + I C +R
Sbjct: 954 VDQCTSLYSLELSNEHLRGPNA-LRNLRINDCQNLQLLPKLNALPQNLQ-VTITNCRYLR 1011
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 3.0e-24, P = 3.0e-24
Identities = 198/752 (26%), Positives = 313/752 (41%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSN-- 58
+YCSLFPK Y F + ++I +W A G ++ ES E G K+ EL F+QQ +
Sbjct: 562 SYCSLFPKGYSFSKAQLIQIWIAQGFVE--ESSEKLEQKGWKYLAELVNSGFLQQVESTR 619
Query: 59 -SISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFE 117
S F+MHDL++DLAQ + Y ++ SE + + ++RHLS + D R E
Sbjct: 620 FSSEYFVMHDLMHDLAQKVSQTEYATID-GSECTE---LAPSIRHLSIVT---DSAYRKE 672
Query: 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILP--------KLFK-----LQRLRAFSLRGYH 164
+I F + SR L +L K FK Q LR + +
Sbjct: 673 KYRNISRNEVFEKRLMKVKSRSKLRSLVLIGQYDSHFFKYFKDAFKEAQHLRLLQITATY 732
Query: 165 IFE--LPDSIGDLRYLRYLNLSGTEI-RTLPESVNKLYNLHSLLLEDCDRLKKLCADMGN 221
S+ + +LRYL + E RTLP S+ K Y+L L + + ++ D+ N
Sbjct: 733 ADSDSFLSSLVNSTHLRYLKIVTEESGRTLPRSLRKYYHLQVLDIGYRFGIPRISNDINN 792
Query: 222 LAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKG-SGSGLRELKLLTHLHGTLNI 280
L L HL + + IG++TSLQ L NF+V SG + +LK + L L++
Sbjct: 793 LLSLRHLVAYD--EVCSSIANIGKMTSLQELGNFIVQNNLSGFEVTQLKSMNKLV-QLSV 849
Query: 281 SKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQ 340
S+LENV+ +A A+L K++L +L L W + +G S E+ ++ +M E E+
Sbjct: 850 SQLENVRTQEEACGAKLKDKQHLEKLHLSWKDAWNGYDSDESYEDEYGSDMNIETEG-EE 908
Query: 341 FCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTAL-PSVGQLPSLKHLAVCGMSRVKR 399
+ G + SN ++ E + ++ L P G LK+L + G
Sbjct: 909 LSVGDANGAQ-----SLQHHSN-ISSELASSEVLEGLEPHHG----LKYLRISG------ 952
Query: 400 LGSEFYGNDSP--IP--FLCLETLRFEDMQEWEDWIPL-RSGQGVE-GFPKLRELHILRC 453
+ G+ SP +P CL+TL E +W+ +PL R G V+ K+R L
Sbjct: 953 ----YNGSTSPTWLPSSLTCLQTLHLEKCGKWQI-LPLERLGLLVKLVLIKMRNATELSI 1007
Query: 454 SKLKGTFPEHLPALEMLVIEGCEEL-----LVSVTSLPALCKFISGGCKKVVWKSAAGHP 508
L+ LP+L L ++ + + P L F ++ K
Sbjct: 1008 PSLEELVLIALPSLNTCSCTSIRNLNSSLKVLKIKNCPVLKVF---PLFEISQKFEIERT 1064
Query: 509 GSQNSVLKKIEIRECDAL---KSLP--------EAWMCGTNSSLEDMSIRQCHSLTYIAA 557
S L K+ I C SLP E C SLE++ I + T
Sbjct: 1065 SSWLPHLSKLTIYNCPLSCVHSSLPPSAISGYGEYGRCTLPQSLEELYIHEYSQETLQPC 1124
Query: 558 VQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGG 617
L+L L H N ++++ LH+ L+E+ I+ C +L S +G
Sbjct: 1125 FSGNLTLLRKL-HVLGNSNLVSLQ-----------LHSCTALEELIIQSCESLSSL-DGL 1171
Query: 618 LPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQSLTI 675
L L C SL+EL I + +L+ G T L+ L +
Sbjct: 1172 QLLGNLRLLRAHRCLSGHGEDGRCILPQSLEELYIHEYSQ-ETLQPCFSGNLTLLRKLHV 1230
Query: 676 EGNMEIWKSMIERGRGFHRFSSLRQLTIINCD 707
GN + + H ++L +L I +C+
Sbjct: 1231 LGNSNLVSLQL------HSCTALEELIIQSCE 1256
|
|
| TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 80/279 (28%), Positives = 127/279 (45%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSIS 61
Y S+FP+DYE + E++I L A G + E ED+ R + EL RS ++
Sbjct: 423 YFSVFPEDYEIKVEKLIHLLVAEGFIQEDEE-MMMEDVARCYIDELVDRSLVKAERIERG 481
Query: 62 RFL---MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFS-ENLRHLSYIPEYCDGVKRFE 117
+ + +HDL+ DLA A E+ F Y + + E + HL CD +R
Sbjct: 482 KVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQHSSDICRREVVHHLMNDYYLCD--RRVN 539
Query: 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFE------LPDS 171
+ +R+FL + RG Y L KL+ LR ++ G LPD
Sbjct: 540 -----KRMRSFLFI---GERRG-FGYVNTTNL-KLKLLRVLNMEGLLFVSKNISNTLPDV 589
Query: 172 IGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231
IG+L +LRYL ++ T + LP S++ L L +L D + D+ L L H+
Sbjct: 590 IGELIHLRYLGIADTYVSILPASISNLRFLQTLDASGNDPFQ-YTTDLSKLTSLRHVIG- 647
Query: 232 NTKSLEEMPVGIG-RLTSLQTLCNFVVGKGSGSGLRELK 269
K + E +G G L +L+++ ++ K + LR L+
Sbjct: 648 --KFVGECLIGEGVNLQTLRSISSYSWSKLNHELLRNLQ 684
|
|
| TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 121/461 (26%), Positives = 200/461 (43%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFREL-RARSFIQQSSNSI 60
YCSLFP+DY E+E +I W G +D ES + G + L RA ++++ N
Sbjct: 413 YCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLLEEAINK- 471
Query: 61 SRFLMHDLINDLAQWAAGEIYFRMEYT--------SEVNKQQSFSENLRHLSYIPEYCDG 112
+ MHD++ ++A W A ++ E EV K +++S ++R +S + +
Sbjct: 472 EQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWS-SVRRMSLMENEIEI 530
Query: 113 VKRFEDLYDIQHLRTFLPVTLSNSSRGHLA---YSILPKLFKLQRLRAFSLRGYHIFELP 169
+ + ++ L FL N S H++ + +P L L SLR +LP
Sbjct: 531 LSGSPECLELTTL--FLQ---KNDSLLHISDEFFRCIPMLVVLDLSGNSSLR-----KLP 580
Query: 170 DSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229
+ I L LRYL+LS T I+ LP + +L L L L+ RLK + + + N++ L L+
Sbjct: 581 NQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRLKSI-SGISNISSLRKLQ 639
Query: 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDV 289
+K +M + + L L+ L + S + +L L L I L V++
Sbjct: 640 LLQSKMSLDMSL-VEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEE 698
Query: 290 GDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLK---PH----ENLEQFC 342
L NL ++++R G E +IE+ L++ P NL
Sbjct: 699 SSGV-LTLPDMDNLNKVIIRKC----GMC--EIKIERKTLSLSSNRSPKTQFLHNLSTVH 751
Query: 343 ISGYGGTKFPTWFGDSSFS-NLVTLEFENCDMCT-------ALPSVGQLPSLKHLAVCGM 394
IS G K TW F+ NL +LE + ++ A+ G +P K L +
Sbjct: 752 ISSCDGLKDLTWL---LFAPNLTSLEVLDSELVEGIINQEKAMTMSGIIPFQK-LESLRL 807
Query: 395 SRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRS 435
+ L S ++ P+ F CL+T+ E +PL S
Sbjct: 808 HNLAMLRSIYW---QPLSFPCLKTIHITKCPELRK-LPLDS 844
|
|
| TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 65/236 (27%), Positives = 114/236 (48%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFREL-RARSFIQQSS-NS 59
YC+LFP+D + +E +I W ++D E + +E+ G + L RA +++ +
Sbjct: 410 YCALFPEDAKIRKENLIEYWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLMEEVELDG 469
Query: 60 ISRFLMHDLINDLAQWAAGEIYFRME---YTSEVNKQQSFS-ENLRHLSYIPEYCDGVKR 115
+ +HD++ ++A W A ++ + E + V ++ EN + + + +
Sbjct: 470 ANIVCLHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSLMKNNIAH 529
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFK-LQRLRAFSLRG-YHIFELPDSIG 173
+ D L T L L ++ HL I + F + +L L G Y++ ELP+ I
Sbjct: 530 LDGRLDCMELTTLL---LQST---HLE-KISSEFFNSMPKLAVLDLSGNYYLSELPNGIS 582
Query: 174 DLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229
+L L+YLNLS T IR LP+ + +L L L LE +L M ++ LH+LK
Sbjct: 583 ELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQL----GSMVGISCLHNLK 634
|
|
| TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 162/608 (26%), Positives = 256/608 (42%)
Query: 24 VGLLDHGESG-NPSEDLGRKFFRELRARSFIQQSSNSISRFLMHDLINDLAQWAAGEIYF 82
+ +LD ESG + L K E + I + +S+ + I DL+ A E
Sbjct: 647 LSVLDLSESGIRQVQTLRNKMVDE-NLKVVILRGCHSL------EAIPDLSNHEALEKLV 699
Query: 83 RMEYTSEVNKQQSFSENLRHLSYIP-EYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHL 141
+ T V +S NLR L ++ C + F L D+ L+ + LS S
Sbjct: 700 FEQCTLLVKVPKSVG-NLRKLIHLDFRRCSKLSEF--LVDVSGLKLLEKLFLSGCSD--- 753
Query: 142 AYSILPK-LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYN 200
S+LP+ + + L+ L G I LP+SI L+ L L+L G +I+ LP + L +
Sbjct: 754 -LSVLPENIGAMTSLKELLLDGTAIKNLPESINRLQNLEILSLRGCKIQELPLCIGTLKS 812
Query: 201 LHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKG 260
L L L+D LK L + +G+L L L SL ++P I L SL+ L F+
Sbjct: 813 LEKLYLDDT-ALKNLPSSIGDLKNLQDLHLVRCTSLSKIPDSINELKSLKKL--FI---- 865
Query: 261 SGSGLRELKLLTHLHGTLNISKLENVKD--VGDAKEA-QLDGKKNLRELLLRWTLSTDGS 317
+GS + EL L S L ++ D GD K Q+ LL+ LS+
Sbjct: 866 NGSAVEELPLKP--------SSLPSLYDFSAGDCKFLKQVPSSIGRLNSLLQLQLSSTPI 917
Query: 318 SSREAEI-------EKDVLN--MLK--PH-----ENLEQFCISGYGGTKFPTWFGDSSFS 361
+ EI E ++ N LK P + L + G + P FG
Sbjct: 918 EALPEEIGALHFIRELELRNCKFLKFLPKSIGDMDTLYSLNLEGSNIEELPEEFG--KLE 975
Query: 362 NLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLR 420
LV L NC M LP S G L SL H + V L E +GN S + + LE L+
Sbjct: 976 KLVELRMSNCKMLKRLPESFGDLKSL-HRLYMKETLVSEL-PESFGNLSNL--MVLEMLK 1031
Query: 421 FEDMQEWEDWIPLRSGQG--VE---GFPKLRELHIL-RCS-KLKGTFPEHLPALEMLVIE 473
+ E +P S + VE F KL +L L CS ++ G P+ L L L+
Sbjct: 1032 KPLFRISESNVPGTSEEPRFVEVPNSFSKLLKLEELDACSWRISGKIPDDLEKLSCLMKL 1091
Query: 474 GC-----EELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKS 528
L S+ L L + C+++ K P L+++ + C +L+S
Sbjct: 1092 NLGNNYFHSLPSSLVKLSNLQELSLRDCREL--KRLPPLPCK----LEQLNLANCFSLES 1145
Query: 529 LPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSS 588
+ + + L D+++ C + I ++ +LK L + C++ +L V++ + +S
Sbjct: 1146 VSDL---SELTILTDLNLTNCAKVVDIPGLEHLTALKRLYMTGCNSNYSLAVKKRLSKAS 1202
Query: 589 SRSGLHNL 596
+ + NL
Sbjct: 1203 LKM-MRNL 1209
|
|
| TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 77/310 (24%), Positives = 136/310 (43%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGE-SGNPSEDLGRKFFRELRARSF-IQQSSNS 59
Y + FP+DYE + E + W A G+ G D+G + EL R+ I +
Sbjct: 430 YLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRRNMVISERDVK 489
Query: 60 ISRFL---MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRF 116
SRF +HD++ ++ A E F ++ TS + + ++ +Y +
Sbjct: 490 TSRFETCHLHDMMREVCLLKAKEENF-LQITSSRPSTANLQSTVTSRRFVYQYPTTLHVE 548
Query: 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLR 176
+D+ + + LR + VTL + + +++ L +L ++ L ++G +L IG L
Sbjct: 549 KDINNPK-LRALVVVTLGSWNLAGSSFTRL-ELLRVLDLIEVKIKGG---KLASCIGKLI 603
Query: 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSL 236
+LRYL+L E+ +P S+ L L L L R + + + +L +L +
Sbjct: 604 HLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQELRYLALPSDMG- 662
Query: 237 EEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQ 296
+ + + L L+TL NF S L +L + L TLNI +E + A
Sbjct: 663 RKTKLELSNLVKLETLENFST---ENSSLEDLCGMVRL-STLNIKLIEETSL--ETLAAS 716
Query: 297 LDGKKNLREL 306
+ G K L +L
Sbjct: 717 IGGLKYLEKL 726
|
|
| TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 77/310 (24%), Positives = 136/310 (43%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGE-SGNPSEDLGRKFFRELRARSF-IQQSSNS 59
Y + FP+DYE + E + W A G+ G D+G + EL R+ I +
Sbjct: 430 YLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRRNMVISERDVK 489
Query: 60 ISRFL---MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRF 116
SRF +HD++ ++ A E F ++ TS + + ++ +Y +
Sbjct: 490 TSRFETCHLHDMMREVCLLKAKEENF-LQITSSRPSTANLQSTVTSRRFVYQYPTTLHVE 548
Query: 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLR 176
+D+ + + LR + VTL + + +++ L +L ++ L ++G +L IG L
Sbjct: 549 KDINNPK-LRALVVVTLGSWNLAGSSFTRL-ELLRVLDLIEVKIKGG---KLASCIGKLI 603
Query: 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSL 236
+LRYL+L E+ +P S+ L L L L R + + + +L +L +
Sbjct: 604 HLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQELRYLALPSDMG- 662
Query: 237 EEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQ 296
+ + + L L+TL NF S L +L + L TLNI +E + A
Sbjct: 663 RKTKLELSNLVKLETLENFST---ENSSLEDLCGMVRL-STLNIKLIEETSL--ETLAAS 716
Query: 297 LDGKKNLREL 306
+ G K L +L
Sbjct: 717 IGGLKYLEKL 726
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 169 (64.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 90/336 (26%), Positives = 144/336 (42%)
Query: 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGE-SGNPSEDLGRKFFRELRARSF-IQQSSNS 59
Y + FP DYE + + W A G+ G D+G + EL R+ I +
Sbjct: 430 YLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVK 489
Query: 60 ISRFL---MHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFS-ENLRHLSYIPEYCDGVKR 115
SRF +HD++ ++ A E F +S + S S R L Y +Y +
Sbjct: 490 TSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRRLVY--QYPITLDV 547
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIF--ELPDSI 172
+D+ D + LR+ + V + G ++ +L F +L+ LR + + +L SI
Sbjct: 548 EKDINDPK-LRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAKLKGGKLASSI 606
Query: 173 GDLRYLRYLNLSGTEIRTLPESVNKL----Y-NLHSLLLEDCDRLKKLCADMGNLAKLHH 227
G L +LRYLNL E+ +P S+ L Y NL +L+ + + +M L L
Sbjct: 607 GQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNL-VILVSGSTLVPNVLKEMQQLRYLAL 665
Query: 228 LKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVK 287
K+ K+ E+ L L+TL NF S LR + L L T+ + K +++
Sbjct: 666 PKDMGRKTKLEL----SNLVKLETLKNFSTKNCSLEDLRGMVRLRTL--TIELRKETSLE 719
Query: 288 DVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAE 323
+ A + G K L L T++ GS R E
Sbjct: 720 TLA----ASIGGLKYLESL----TITDLGSEMRTKE 747
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 815 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-08 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 9e-07 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 6e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.003 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 599 LQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVEL 658
L+ + + C +LV P KL L++S C+ LE LP G+ NL SL L + L
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL 717
Query: 659 PSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKAD 718
S + + TN+ L ++ + IE R +L +L + +M S +
Sbjct: 718 KSFPD--ISTNISWLDLDE------TAIEEFPSNLRLENLDELILC----EMKS-EKLWE 764
Query: 719 DKRLGTAL--PLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLP 776
+ T L L SLT L++S P+L L SSI +L L L + +C L+ P
Sbjct: 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL 824
Query: 777 SSLLQLDIWGC 787
SL LD+ GC
Sbjct: 825 ESLESLDLSGC 835
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 9e-07
Identities = 84/338 (24%), Positives = 137/338 (40%), Gaps = 40/338 (11%)
Query: 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTE-IRTLPESVNKLYNLHSL 204
+P F+ + L ++G + +L D + L LR ++L G++ ++ +P+ ++ NL +L
Sbjct: 604 MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662
Query: 205 LLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSG 264
L DC L +L + + L KL L S ++LE +P GI L SL L + SG
Sbjct: 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN-LKSLYRL--------NLSG 713
Query: 265 LRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELL-LRWTLSTDGSSSREAE 323
LK + + NIS L D+ + + L L L +
Sbjct: 714 CSRLKSFPDI--STNISWL----DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767
Query: 324 IEKDVLNMLKPHENLEQFCISGYGG-TKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQ 382
++ ML P +L + +S + P+ + L LE ENC LP+
Sbjct: 768 PLTPLMTMLSP--SLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGIN 823
Query: 383 LPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGF 442
L SL+ L + G SR++ F + I L L E++ W +E F
Sbjct: 824 LESLESLDLSGCSRLR----TFPDISTNISDLNLSRTGIEEVPWW-----------IEKF 868
Query: 443 PKLRELHILRCSKLKGTFPE--HLPALEMLVIEGCEEL 478
L L + C+ L+ L LE + C L
Sbjct: 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 6e-06
Identities = 72/295 (24%), Positives = 109/295 (36%), Gaps = 87/295 (29%)
Query: 515 LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLS------LKNLL 568
L+ I++R LK +P+ M ++LE + + C SL V+LP S L++L
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMA---TNLETLKLSDCSSL-----VELPSSIQYLNKLEDLD 687
Query: 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEI 628
+ +C+N+ L GI NL+ L +++ C L SFP+ + L E
Sbjct: 688 MSRCENLEILPT--GI----------NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735
Query: 629 SSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDG-----------LPTNLQSLTIEG 677
+ +E P L L+ L E+ S K L +L L +
Sbjct: 736 A----IEEFPSNLR----LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787
Query: 678 NMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWI 737
S++E L L I NC
Sbjct: 788 I----PSLVELPSSIQNLHKLEHLEIENCI------------------------------ 813
Query: 738 SGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIEE 792
NLE L + I +L++L SL L C +L+ FP+ S L L G IEE
Sbjct: 814 ----NLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG---IEE 860
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 91 NKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF 150
N +L L + D + LP N +R S + +L
Sbjct: 57 NTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL---RSNISELL 113
Query: 151 KLQRLRAFSLRGYHIFELPDSIGDLRY-LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDC 209
+L L + L +I ++P IG L+ L+ L+LS +I +LP + L NL +L L
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173
Query: 210 DRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
D L L + NL+ L++L S K + ++P I L++L+ L
Sbjct: 174 D-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEEL 214
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 203
+ L L L L G I +LP I L L L+LS I L S++ L NL
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSG 236
Query: 204 LLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGS 263
L L ++L+ L +GNL+ L L SN + + + +G LT+L+ L + S S
Sbjct: 237 LEL-SNNKLEDLPESIGNLSNLETLDLSNNQ-ISSIS-SLGSLTNLRELD---LSGNSLS 290
Query: 264 GLRELKLLTHLHGTLNISKLENVKDV 289
L L L L ++ L +K +
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLKAL 316
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 815 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.95 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.92 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.92 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.66 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.64 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.62 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.57 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.55 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.51 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.51 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.48 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.45 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.09 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.05 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.02 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.0 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.92 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.85 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.78 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.74 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.7 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.7 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.67 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.61 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.6 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.56 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.56 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.44 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.43 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.36 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.34 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.34 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.33 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.25 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.24 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.23 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.2 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.19 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.17 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.11 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.06 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.96 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.84 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.73 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.69 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.5 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.45 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.4 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.99 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.97 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.91 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.85 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.67 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.63 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.35 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.16 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.03 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 95.52 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.69 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.3 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.24 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.09 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.0 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.68 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 92.16 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 92.16 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.9 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 87.86 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 87.86 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 85.6 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=400.75 Aligned_cols=512 Identities=17% Similarity=0.209 Sum_probs=242.0
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccc-cCCCcccEEEcCCCCcc-ccCccccCCccCCEEecCCCCCC-ccchh
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKL-FKLQRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTEIR-TLPES 194 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~ 194 (815)
.+..+++|+.|.+.++. +...+|..+ ..+++||+|+|++|++. .+|. +.+++|++|+|++|.+. .+|..
T Consensus 88 ~~~~l~~L~~L~Ls~n~------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~ 159 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQ------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND 159 (968)
T ss_pred HHhCCCCCCEEECCCCc------cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH
Confidence 34456666666555432 333444444 35666666666666654 2332 34566666666666655 55666
Q ss_pred hhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCcccccccccc
Q 044882 195 VNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHL 274 (815)
Q Consensus 195 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 274 (815)
++++++|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|+......
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--------------- 224 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL--------------- 224 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc---------------
Confidence 66666666666666643445666666666666666666654445555566666666553211100
Q ss_pred ccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCC-CCCc
Q 044882 275 HGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGT-KFPT 353 (815)
Q Consensus 275 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~ 353 (815)
....+..+..+++|+.|++++| ... .+|.
T Consensus 225 ---------------~~~~p~~l~~l~~L~~L~L~~n-----------------------------------~l~~~~p~ 254 (968)
T PLN00113 225 ---------------SGEIPYEIGGLTSLNHLDLVYN-----------------------------------NLTGPIPS 254 (968)
T ss_pred ---------------CCcCChhHhcCCCCCEEECcCc-----------------------------------eeccccCh
Confidence 0001111333444445554444 332 2344
Q ss_pred cCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccc
Q 044882 354 WFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIP 432 (815)
Q Consensus 354 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 432 (815)
.+. .+++|++|++++|.+.+.+| .+..+++|++|++++|.....++. .+. .+++|+.|.+.+....... .
T Consensus 255 ~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~-----~l~~L~~L~l~~n~~~~~~-~ 325 (968)
T PLN00113 255 SLG--NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVI-----QLQNLEILHLFSNNFTGKI-P 325 (968)
T ss_pred hHh--CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHc-----CCCCCcEEECCCCccCCcC-C
Confidence 433 24555555555555544444 445555555555555422111110 000 0222222222211100000 0
Q ss_pred cCCCCCcccCCCcceeeeccCcccccCCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCc
Q 044882 433 LRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQN 512 (815)
Q Consensus 433 ~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 512 (815)
..+..+++|+.|++++| .+.+.+|..+ ..+
T Consensus 326 ----~~~~~l~~L~~L~L~~n-~l~~~~p~~l------------------~~~--------------------------- 355 (968)
T PLN00113 326 ----VALTSLPRLQVLQLWSN-KFSGEIPKNL------------------GKH--------------------------- 355 (968)
T ss_pred ----hhHhcCCCCCEEECcCC-CCcCcCChHH------------------hCC---------------------------
Confidence 11114555555555553 3443444211 111
Q ss_pred cccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSG 592 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~ 592 (815)
++|+.|++++|.....+|..+ ..+++|+.|++++|.....++. .+..|++|+.+++++|.+.+..|..
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~p~----------~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEIPK----------SLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccCCH----------HHhCCCCCCEEECcCCEeeeECChh
Confidence 223333333333333333333 2344444444444432211110 1223444555555555555555555
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC-CCCCCCc
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED-GLPTNLQ 671 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~ 671 (815)
+..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.....+|.. ..+++|+
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccC
Confidence 5555555555555555444444444455555555555555555544433 2355555555555433333322 3445555
Q ss_pred eEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCC
Q 044882 672 SLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIV 751 (815)
Q Consensus 672 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 751 (815)
+|++++|......+ ..+..+++|+.|++++ +.....+|. .+..+++|+.|++++|+....+|..+.
T Consensus 503 ~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~-N~l~~~~p~---------~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 503 QLKLSENKLSGEIP----DELSSCKKLVSLDLSH-NQLSGQIPA---------SFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred EEECcCCcceeeCC----hHHcCccCCCEEECCC-CcccccCCh---------hHhCcccCCEEECCCCcccccCChhHh
Confidence 55555554332111 2345566666666665 222222322 234556777777777655556676667
Q ss_pred CCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCc
Q 044882 752 DLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 752 ~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
.+++|+.|++++|+-...+|..+.+.++....+.++|
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred cCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 7777777777776655566654444444444444544
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=395.83 Aligned_cols=507 Identities=19% Similarity=0.206 Sum_probs=371.5
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcc-ccCcccc-CCccCCEEecCCCCCC-ccchhhhccC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPDSIG-DLRYLRYLNLSGTEIR-TLPESVNKLY 199 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~-~l~~L~~L~L~~~~i~-~lp~~i~~L~ 199 (815)
.+++.|.+.++. +....+..|..+++|++|+|++|++. .+|..+. .+++||+|+|++|.+. .+|. +.++
T Consensus 69 ~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKN------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEecCCC------ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 467777666543 34455667788999999999999887 6787654 8899999999999886 4553 5688
Q ss_pred CCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCcccccccccccccee
Q 044882 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLN 279 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 279 (815)
+|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|+....
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n---------------------- 198 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN---------------------- 198 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC----------------------
Confidence 9999999998555578888999999999999998856677877888888887743211
Q ss_pred eecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCC-CCCccCCCC
Q 044882 280 ISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGT-KFPTWFGDS 358 (815)
Q Consensus 280 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~ 358 (815)
.. ....+..+..+++|+.|+++++... .+|..+.
T Consensus 199 --------------------------------~l-----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-- 233 (968)
T PLN00113 199 --------------------------------QL-----------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-- 233 (968)
T ss_pred --------------------------------CC-----------cCcCChHHcCcCCccEEECcCCccCCcCChhHh--
Confidence 10 0001112223344455555544433 4566655
Q ss_pred CCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCC
Q 044882 359 SFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQ 437 (815)
Q Consensus 359 ~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 437 (815)
.+++|++|++++|.+.+.+| .++.+++|+.|++++|.....++ .
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----------------------------------~ 278 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-----------------------------------P 278 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-----------------------------------h
Confidence 47888888888888776666 67888888888887764322221 1
Q ss_pred CcccCCCcceeeeccCcccccCCC---CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccc
Q 044882 438 GVEGFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSV 514 (815)
Q Consensus 438 ~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 514 (815)
.+..+++|+.|++++| .+.+.+| ..+++|+.|++.+|.........+ ...++
T Consensus 279 ~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~------------------------~~l~~ 333 (968)
T PLN00113 279 SIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL------------------------TSLPR 333 (968)
T ss_pred hHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhH------------------------hcCCC
Confidence 1124667777777774 5555565 345566666665553221100000 11156
Q ss_pred cceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccC
Q 044882 515 LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLH 594 (815)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~ 594 (815)
|+.|++++|.....+|..+ ..+++|+.|++++|.....++. . +..+++|+.++++.|.+.+..|..+.
T Consensus 334 L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~-----~-----~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPE-----G-----LCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCCh-----h-----HhCcCCCCEEECcCCEecccCCHHHh
Confidence 7888888887777777766 7889999999999864433321 1 34457888999999999999999999
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEE
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLT 674 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 674 (815)
.+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|.....+|.....++|+.|+
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ 481 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD 481 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEE
Confidence 99999999999999888899999999999999999999999999888899999999999998777777666668999999
Q ss_pred EcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCC
Q 044882 675 IEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQ 754 (815)
Q Consensus 675 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~ 754 (815)
+++|....... ..+..+++|+.|++++ +.....+|. .+..+++|+.|++++|.....+|..+..++
T Consensus 482 ls~n~l~~~~~----~~~~~l~~L~~L~Ls~-N~l~~~~p~---------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 482 LSRNQFSGAVP----RKLGSLSELMQLKLSE-NKLSGEIPD---------ELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred CcCCccCCccC----hhhhhhhccCEEECcC-CcceeeCCh---------HHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 99997654222 4678899999999999 333345554 345788999999999777778888999999
Q ss_pred CCCeeeeCCCCCCcccCC-CCCCCccceeeecCCcch
Q 044882 755 NLASLYLGDCPKLKYFPE-KGLPSSLLQLDIWGCPLI 790 (815)
Q Consensus 755 ~L~~L~i~~c~~l~~l~~-~~~~~~L~~L~i~~c~~l 790 (815)
+|+.|++++|+-...+|. ....++|+.|++++|+-.
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 999999999866667776 234578999999998743
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=357.34 Aligned_cols=248 Identities=29% Similarity=0.436 Sum_probs=194.8
Q ss_pred CeEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeC--CCcccccchhHHHHHHHHHhc
Q 044882 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSS--NSISRFLMHDLINDLAQWAAG 78 (815)
Q Consensus 1 ~ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~~mHdlv~d~a~~~~~ 78 (815)
+|||+|||||+|++++||.|||||||+++.+.++.++|+|+.|+++||++||++... ....+|+|||+|||||.|+|+
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 599999999999999999999999999987778999999999999999999999876 246899999999999999998
Q ss_pred -----cceEEeccc--cccccccCcCCceeEEEeecccccccccccccccCCCceEEccccCCcCcCCCcccccccc-cc
Q 044882 79 -----EIYFRMEYT--SEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPK-LF 150 (815)
Q Consensus 79 -----~~~~~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~-~~ 150 (815)
++...+... .........+..+|+++++.+.... ...-.+++++++|.+..+..+ ...++.. |.
T Consensus 497 ~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~~-----l~~is~~ff~ 568 (889)
T KOG4658|consen 497 DFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSDW-----LLEISGEFFR 568 (889)
T ss_pred cccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecchh-----hhhcCHHHHh
Confidence 454333322 1111233456788999999875433 344456678999998876420 1233333 57
Q ss_pred CCCcccEEEcCCCC-ccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 151 KLQRLRAFSLRGYH-IFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
.++.||+|||++|. +..+|++|+.|.+||||+++++.|..+|.++++|++|.+||+..+..+..+|.....|++||+|.
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 89999999999874 78999999999999999999999999999999999999999999977777777777899999999
Q ss_pred ccCCCcccccccccccccccccccceee
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVV 257 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 257 (815)
+.... ...-...++.+.+|++|....+
T Consensus 649 l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 649 LPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eeccc-cccchhhHHhhhcccchhhhee
Confidence 97764 2211222445555555544333
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=326.79 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=166.4
Q ss_pred CeEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeCCCcccccchhHHHHHHHHHhccc
Q 044882 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSISRFLMHDLINDLAQWAAGEI 80 (815)
Q Consensus 1 ~ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~mHdlv~d~a~~~~~~~ 80 (815)
.|||.||.++.+ +.|..|.|.+.+.. +.-++.|+++||++... .+++|||++||||+++++++
T Consensus 443 l~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 443 RHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred heehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhh
Confidence 478999998755 45888998876642 22388999999998764 57999999999999998765
Q ss_pred e-------EEeccc--cccccccCcCCceeEEEeecccccccc-cccccccCCCceEEccccCCcCcCCCcccccccccc
Q 044882 81 Y-------FRMEYT--SEVNKQQSFSENLRHLSYIPEYCDGVK-RFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF 150 (815)
Q Consensus 81 ~-------~~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~~~~-~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~ 150 (815)
. +.+... ...........+++++++......... ....+.++++|+.|.+........+.....+|..|.
T Consensus 506 ~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~ 585 (1153)
T PLN03210 506 SNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFD 585 (1153)
T ss_pred cCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchh
Confidence 3 111110 011112233456777776544332211 124567888888887754321011122345566665
Q ss_pred CC-CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 151 KL-QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 151 ~l-~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
.+ ..||+|++.++.++.+|..| ...+|++|+++++.+..+|..+..+++|++|+|++|..+..+|. ++.+++|+.|+
T Consensus 586 ~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 586 YLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred hcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 54 46999999999999999887 56899999999999999998889999999999998877888885 88899999999
Q ss_pred ccCCCcccccccccccccccccc
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+++|..+..+|..++++++|+.|
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEE
Confidence 99988777888777766666666
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-29 Score=251.95 Aligned_cols=187 Identities=18% Similarity=0.249 Sum_probs=145.5
Q ss_pred ccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccC
Q 044882 563 SLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLH 642 (815)
Q Consensus 563 ~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 642 (815)
.|+.-.+++|.++++++++.|++.....+++.++++|+.|++++|.+...-+++|..+++|++|++++|.+...-++.+.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 34444467778888888888888887778888899999999999988777788888889999999999998777777888
Q ss_pred CCCCcCcEEecCCCCCCCCCCC--CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcccc
Q 044882 643 NLTSLQELTIGRGVELPSLKED--GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDK 720 (815)
Q Consensus 643 ~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 720 (815)
.+..|++|+|++| .+..+.++ ..+++|+.|+|++|.... ...+....|.++++|++|++.+ |++.+++.
T Consensus 339 ~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~g--Nqlk~I~k----- 409 (873)
T KOG4194|consen 339 VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTG--NQLKSIPK----- 409 (873)
T ss_pred HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecC--ceeeecch-----
Confidence 8999999999998 66666655 467899999999887543 2222224678899999999998 88999988
Q ss_pred ccccCCCCCCccceEEecCCCCCccc-cccCCCCCCCCeeeeCC
Q 044882 721 RLGTALPLPASLTSLWISGFPNLERL-SSSIVDLQNLASLYLGD 763 (815)
Q Consensus 721 ~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~ 763 (815)
.+|..++.|+.|+|.+ |-+.+| |..|..+ .|++|.+..
T Consensus 410 ---rAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 410 ---RAFSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---hhhccCcccceecCCC-Ccceeecccccccc-hhhhhhhcc
Confidence 5567788999999998 556665 4466666 888876643
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-31 Score=257.83 Aligned_cols=470 Identities=22% Similarity=0.264 Sum_probs=268.0
Q ss_pred ccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCC
Q 044882 145 ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAK 224 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 224 (815)
+.+++.++..|.+|++.+|.+.++|.+++++..++.|+.++|++.++|+.++.+..|+.|+.++| .+.++|++++.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhh
Confidence 44455667777777777777777777777777777777777777777777777777777777777 66777777777777
Q ss_pred cceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCc
Q 044882 225 LHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLR 304 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 304 (815)
|+.|+..+|. +..+|.+++.+.+|..+..... . ..+..+..-
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n------------------------~-------l~~l~~~~i------ 180 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN------------------------K-------LKALPENHI------ 180 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHhhcccc------------------------c-------hhhCCHHHH------
Confidence 7777777766 6677777766666665521110 0 000000001
Q ss_pred eeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 044882 305 ELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLP 384 (815)
Q Consensus 305 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 384 (815)
..+.|++|+...|....+|..++ .+.+|..|++..|.+ ..+|.|+++.
T Consensus 181 -----------------------------~m~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nki-~~lPef~gcs 228 (565)
T KOG0472|consen 181 -----------------------------AMKRLKHLDCNSNLLETLPPELG--GLESLELLYLRRNKI-RFLPEFPGCS 228 (565)
T ss_pred -----------------------------HHHHHHhcccchhhhhcCChhhc--chhhhHHHHhhhccc-ccCCCCCccH
Confidence 12344555555555556666665 366666666666653 3455666666
Q ss_pred CcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCC-
Q 044882 385 SLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEH- 463 (815)
Q Consensus 385 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~- 463 (815)
.|++|.+..| .++.++.+... .++++..|++.+ ++++ .+|..
T Consensus 229 ~L~Elh~g~N-~i~~lpae~~~----------------------------------~L~~l~vLDLRd-Nklk-e~Pde~ 271 (565)
T KOG0472|consen 229 LLKELHVGEN-QIEMLPAEHLK----------------------------------HLNSLLVLDLRD-NKLK-EVPDEI 271 (565)
T ss_pred HHHHHHhccc-HHHhhHHHHhc----------------------------------ccccceeeeccc-cccc-cCchHH
Confidence 6666666544 34443332221 344555555555 4555 45522
Q ss_pred --CCCccEEEEecccC--ccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCC-C
Q 044882 464 --LPALEMLVIEGCEE--LLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGT-N 538 (815)
Q Consensus 464 --l~~L~~L~l~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l 538 (815)
+.+|+.|+++++.. +...++++ .|+.|.+.+|+ +..+...++.++ -
T Consensus 272 clLrsL~rLDlSNN~is~Lp~sLgnl----------------------------hL~~L~leGNP-lrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISSLPYSLGNL----------------------------HLKFLALEGNP-LRTIRREIISKGTQ 322 (565)
T ss_pred HHhhhhhhhcccCCccccCCcccccc----------------------------eeeehhhcCCc-hHHHHHHHHcccHH
Confidence 23344444443321 11111111 23444444444 222222111000 0
Q ss_pred CCcceEEE-eccCCchhh-----hccccccccceEecccccccccccccccccccCcccccCC--CCCCceEEeccCCCc
Q 044882 539 SSLEDMSI-RQCHSLTYI-----AAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHN--LRQLQEISIRRCGNL 610 (815)
Q Consensus 539 ~~L~~L~l-~~~~~l~~~-----~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~--l~~L~~L~l~~~~~l 610 (815)
.-|++|.= ..|.++..- .....+ +-..-+.......+.++.+.-+++.+..+.|.. -.-....+++.|+ +
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~-~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-L 400 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLP-SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-L 400 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCC-CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-H
Confidence 01111110 001010000 000000 111112233344555555555555444333322 1236778888885 6
Q ss_pred ccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcC
Q 044882 611 VSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERG 689 (815)
Q Consensus 611 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~ 689 (815)
..+|.....+..+.+.-+.++...+.+|..+..+++|..|++++| .+.++|.. +.+..|+.|+++.|. +...|
T Consensus 401 ~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-----Fr~lP 474 (565)
T KOG0472|consen 401 CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-----FRMLP 474 (565)
T ss_pred hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-----cccch
Confidence 677777766666666555555556777778888999999999998 66667654 567779999999883 22222
Q ss_pred cCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcc
Q 044882 690 RGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKY 769 (815)
Q Consensus 690 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~ 769 (815)
..+..+..++.+-.++ +.+..++. ++ +..+.+|+.||+.+ +.++.+|+.++++++|++|+++++| ++
T Consensus 475 ~~~y~lq~lEtllas~--nqi~~vd~----~~----l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp-fr- 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASN--NQIGSVDP----SG----LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP-FR- 541 (565)
T ss_pred HHHhhHHHHHHHHhcc--ccccccCh----HH----hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc-cC-
Confidence 3344455566666665 88888887 32 36788999999999 8999999999999999999999965 33
Q ss_pred cCC
Q 044882 770 FPE 772 (815)
Q Consensus 770 l~~ 772 (815)
.|.
T Consensus 542 ~Pr 544 (565)
T KOG0472|consen 542 QPR 544 (565)
T ss_pred CCH
Confidence 554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-28 Score=256.30 Aligned_cols=442 Identities=22% Similarity=0.242 Sum_probs=293.9
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
.+..+|++||+++|.+..+|..+..+.+|+.|+++.|.|...|.+++++.+|++|+|.+| .+..+|.++..+++|+.|+
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLD 120 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccc
Confidence 444559999999999999998898899999999999999999988899999999999888 8888999899999999999
Q ss_pred ccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeE
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 309 (815)
+++|. +..+|..+..++.+..+...
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s------------------------------------------------------ 145 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAAS------------------------------------------------------ 145 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhh------------------------------------------------------
Confidence 99888 77777766666555544110
Q ss_pred EccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCe
Q 044882 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKH 388 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 388 (815)
+| . .+..++ -..++.+++..+.+.+.+. .+..+.+ .
T Consensus 146 ~N-~---------------------------------~~~~lg-------~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ 182 (1081)
T KOG0618|consen 146 NN-E---------------------------------KIQRLG-------QTSIKKLDLRLNVLGGSFLIDIYNLTH--Q 182 (1081)
T ss_pred cc-h---------------------------------hhhhhc-------cccchhhhhhhhhcccchhcchhhhhe--e
Confidence 00 0 000011 0115566666665555444 3444333 4
Q ss_pred eeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCCCCCcc
Q 044882 389 LAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALE 468 (815)
Q Consensus 389 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~ 468 (815)
|++.+|... .+. ...+++|+.+.... +++. .+--.-++++
T Consensus 183 ldLr~N~~~-~~d-------------------------------------ls~~~~l~~l~c~r-n~ls-~l~~~g~~l~ 222 (1081)
T KOG0618|consen 183 LDLRYNEME-VLD-------------------------------------LSNLANLEVLHCER-NQLS-ELEISGPSLT 222 (1081)
T ss_pred eecccchhh-hhh-------------------------------------hhhccchhhhhhhh-cccc-eEEecCcchh
Confidence 777666322 110 01344555554443 4444 3333344555
Q ss_pred EEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEec
Q 044882 469 MLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQ 548 (815)
Q Consensus 469 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 548 (815)
.|+..+|+.. +......|.+|++++++.+. +..+|.+. ..+.+|+.+...+
T Consensus 223 ~L~a~~n~l~--------------------------~~~~~p~p~nl~~~dis~n~-l~~lp~wi--~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 223 ALYADHNPLT--------------------------TLDVHPVPLNLQYLDISHNN-LSNLPEWI--GACANLEALNANH 273 (1081)
T ss_pred eeeeccCcce--------------------------eeccccccccceeeecchhh-hhcchHHH--HhcccceEecccc
Confidence 5555555332 22234456789999999886 77788554 7899999999988
Q ss_pred cCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCC-C-CCcceE
Q 044882 549 CHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLP-C-AKLTRL 626 (815)
Q Consensus 549 ~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-l-~~L~~L 626 (815)
+.. ..++.. ++...+|+.+....|.+.... .....+.+|++|+|..|. +..+|..+.. + .+|+.|
T Consensus 274 N~l-~~lp~r----------i~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 274 NRL-VALPLR----------ISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred hhH-HhhHHH----------HhhhhhHHHHHhhhhhhhhCC-Ccccccceeeeeeehhcc-ccccchHHHhhhhHHHHHH
Confidence 843 444432 344566777777666665443 355668889999998885 5666664332 2 236777
Q ss_pred EecccccccccccccCCCCCcCcEEecCCCCCC-CCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 627 EISSCKRLEALPKGLHNLTSLQELTIGRGVELP-SLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 627 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
+.+.|++.......=..++.|+.|++.+|..-. .+|.......|+.|++++|..-.... ..+.++..|++|++++
T Consensus 341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa----s~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA----SKLRKLEELEELNLSG 416 (1081)
T ss_pred hhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH----HHHhchHHhHHHhccc
Confidence 777766433322222356778888888884322 34445567788888888886443222 4577888888888888
Q ss_pred cCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCC-CCCC-Cccceee
Q 044882 706 CDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPE-KGLP-SSLLQLD 783 (815)
Q Consensus 706 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~-~~~~-~~L~~L~ 783 (815)
|.++.+|. ....++.|+.|...+ |.+..+| .+..++.|+.+|++ |++|+.+.. ...| ++|+.||
T Consensus 417 --NkL~~Lp~---------tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 417 --NKLTTLPD---------TVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred --chhhhhhH---------HHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceee
Confidence 88888875 235677888888888 7888888 78888999999997 688877644 4456 7899999
Q ss_pred ecCCcch
Q 044882 784 IWGCPLI 790 (815)
Q Consensus 784 i~~c~~l 790 (815)
++|++.+
T Consensus 483 lSGN~~l 489 (1081)
T KOG0618|consen 483 LSGNTRL 489 (1081)
T ss_pred ccCCccc
Confidence 9998853
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=258.50 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=88.8
Q ss_pred CCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEE
Q 044882 596 LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTI 675 (815)
Q Consensus 596 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 675 (815)
.++|+.|++++|+....+|..+..+++|+.|++++|..++.+|..+ .+++|+.|++++|..+..+|. .+.+|++|++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeEC
Confidence 5678888888888888888888888888888888888778787765 678888888888877776654 3456777777
Q ss_pred cCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccc
Q 044882 676 EGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERL 746 (815)
Q Consensus 676 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l 746 (815)
++|.... .+..+..+++|+.|++.+ |+++..++. ....+++|+.+++++|..++.+
T Consensus 854 s~n~i~~-----iP~si~~l~~L~~L~L~~-C~~L~~l~~---------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 854 SRTGIEE-----VPWWIEKFSNLSFLDMNG-CNNLQRVSL---------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCcc-----ChHHHhcCCCCCEEECCC-CCCcCccCc---------ccccccCCCeeecCCCcccccc
Confidence 7764322 112345556666666665 455555544 1123455555555555555443
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-26 Score=232.50 Aligned_cols=358 Identities=18% Similarity=0.214 Sum_probs=201.0
Q ss_pred ccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 232 (815)
-++||+++|.+..+ +..|.++++|+.+++..|.++.+|...+...+|+.|+|.+| .+.++. .++..++.||.||++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh
Confidence 35566666666655 45566666666666666666666666666666666666666 444433 3455666666666666
Q ss_pred CCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEcc
Q 044882 233 TKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTL 312 (815)
Q Consensus 233 ~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 312 (815)
|. +..+|.. .+....++++|+++.|.
T Consensus 159 N~-is~i~~~-----------------------------------------------------sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 159 NL-ISEIPKP-----------------------------------------------------SFPAKVNIKKLNLASNR 184 (873)
T ss_pred ch-hhcccCC-----------------------------------------------------CCCCCCCceEEeecccc
Confidence 65 4444321 01112233444444443
Q ss_pred CCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCC-CCCCCCCCCcCeeee
Q 044882 313 STDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTA-LPSVGQLPSLKHLAV 391 (815)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~l 391 (815)
++ ......+..+.+|..|.|+.|.++.+|...+. .++.|+.|+|..|.+... --.|.++++|+.|.+
T Consensus 185 It-----------~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 185 IT-----------TLETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred cc-----------ccccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 31 01112223333455555555555555554442 355555555555554332 124555555555555
Q ss_pred ccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC----CCCCCc
Q 044882 392 CGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP----EHLPAL 467 (815)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L 467 (815)
..|. +..+.. ..+..+.++++|+++. |++. .+. -++.+|
T Consensus 253 qrN~-I~kL~D----------------------------------G~Fy~l~kme~l~L~~-N~l~-~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 253 QRND-ISKLDD----------------------------------GAFYGLEKMEHLNLET-NRLQ-AVNEGWLFGLTSL 295 (873)
T ss_pred hhcC-cccccC----------------------------------cceeeecccceeeccc-chhh-hhhcccccccchh
Confidence 5542 222211 1122566777777776 5555 222 234555
Q ss_pred cEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEe
Q 044882 468 EMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIR 547 (815)
Q Consensus 468 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 547 (815)
+.|+++.+..- ..++.. -.+.++|+.|+++.|. +..++...+ ..+..|++|+++
T Consensus 296 ~~L~lS~NaI~-----------rih~d~-------------WsftqkL~~LdLs~N~-i~~l~~~sf-~~L~~Le~LnLs 349 (873)
T KOG4194|consen 296 EQLDLSYNAIQ-----------RIHIDS-------------WSFTQKLKELDLSSNR-ITRLDEGSF-RVLSQLEELNLS 349 (873)
T ss_pred hhhccchhhhh-----------eeecch-------------hhhcccceeEeccccc-cccCChhHH-HHHHHhhhhccc
Confidence 55655554221 111111 1222567778887776 444444433 667788888888
Q ss_pred ccCCchhhhccccccccceEecccccccccccccccccccCc---ccccCCCCCCceEEeccCCCcccccC-CCCCCCCc
Q 044882 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS---RSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKL 623 (815)
Q Consensus 548 ~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L 623 (815)
+|. +.+ |..-.+.++.+|+.|++++|.++..+ ...|.++++|+.|++.+|+ ++.+|. ++..+++|
T Consensus 350 ~Ns-i~~---------l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 350 HNS-IDH---------LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEAL 418 (873)
T ss_pred ccc-hHH---------HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCccc
Confidence 873 333 33334556777888888888776544 3345667888888888775 455544 67777888
Q ss_pred ceEEecccccccccccccCCCCCcCcEEecC
Q 044882 624 TRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 624 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
+.|++.+|.+...-|..|..+ .|++|.+..
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 888888888777777777777 777776654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-29 Score=240.27 Aligned_cols=246 Identities=25% Similarity=0.271 Sum_probs=162.4
Q ss_pred cccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhh
Q 044882 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVN 196 (815)
Q Consensus 117 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 196 (815)
++..++..+.+|.+.++. -...|+.++++..+..|+.++|++..+|+.++.+..|+.|+.++|.+.++|++|+
T Consensus 62 ~dl~nL~~l~vl~~~~n~-------l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNK-------LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred HhhhcccceeEEEeccch-------hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH
Confidence 344455555666555442 1455666677777777777777777777777777777777777777777777777
Q ss_pred ccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccC-CCCCccccccccccc
Q 044882 197 KLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKG-SGSGLRELKLLTHLH 275 (815)
Q Consensus 197 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~-~~~~~~~l~~L~~L~ 275 (815)
.+..|+.|+..+| .+..+|.+++.+.+|..|++.+|+ +..+|+..-+++.|++|+.....-. -+..++.+.+|..|.
T Consensus 135 ~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence 7777777777776 677777777777777777777776 6666665444667766643221111 112222222222221
Q ss_pred cceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccC
Q 044882 276 GTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWF 355 (815)
Q Consensus 276 ~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 355 (815)
+.-+.+.. . ..+.++..|.++++..|.+ +.-.-+....++++..|++..|+.+++|+.+
T Consensus 213 --L~~Nki~~-------l-Pef~gcs~L~Elh~g~N~i-----------~~lpae~~~~L~~l~vLDLRdNklke~Pde~ 271 (565)
T KOG0472|consen 213 --LRRNKIRF-------L-PEFPGCSLLKELHVGENQI-----------EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI 271 (565)
T ss_pred --hhhccccc-------C-CCCCccHHHHHHHhcccHH-----------HhhHHHHhcccccceeeeccccccccCchHH
Confidence 11111111 1 1366777788888776654 3333445567889999999999999999987
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCC
Q 044882 356 GDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMS 395 (815)
Q Consensus 356 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 395 (815)
. .+.+|++|++++|.+..-.+.++++ +|+.|.+.||+
T Consensus 272 c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 272 C--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred H--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 6 4888999999999987766699999 99999999986
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-28 Score=243.19 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=102.2
Q ss_pred ccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccc--cccchhhc
Q 044882 143 YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRL--KKLCADMG 220 (815)
Q Consensus 143 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l--~~lp~~i~ 220 (815)
..+|.+...|..++.|.|.+..+..+|+.++.+.+|+.|.+++|++..+-..++.|+.||.+++++| ++ ..+|..|-
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF 100 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIF 100 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhc
Confidence 3455555566666666666666666666666666666666666666655555666666666666655 33 24566666
Q ss_pred CcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCC
Q 044882 221 NLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGK 300 (815)
Q Consensus 221 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 300 (815)
.|..|..||+++|+ +...|.++..
T Consensus 101 ~l~dLt~lDLShNq-L~EvP~~LE~------------------------------------------------------- 124 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-LREVPTNLEY------------------------------------------------------- 124 (1255)
T ss_pred ccccceeeecchhh-hhhcchhhhh-------------------------------------------------------
Confidence 66666666666665 5555544322
Q ss_pred cCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCC
Q 044882 301 KNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSV 380 (815)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 380 (815)
-+++-.|+|++|.+.++|..++. +++-|-.|+|++|.+..-.|.+
T Consensus 125 ----------------------------------AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 125 ----------------------------------AKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred ----------------------------------hcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHH
Confidence 22444556666777777776653 5677778888888866555577
Q ss_pred CCCCCcCeeeeccCC
Q 044882 381 GQLPSLKHLAVCGMS 395 (815)
Q Consensus 381 ~~l~~L~~L~l~~~~ 395 (815)
..+.+|+.|.+++|+
T Consensus 170 RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNP 184 (1255)
T ss_pred HHHhhhhhhhcCCCh
Confidence 888888888888875
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-27 Score=253.00 Aligned_cols=462 Identities=21% Similarity=0.220 Sum_probs=314.8
Q ss_pred cccccccCCCcccEEEcCCCCccccCc-cccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCc
Q 044882 144 SILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNL 222 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 222 (815)
.+|..+..-..+..|+++.|.+-..|- .+.+-.+|+.||+++|.+...|..|..+.+|+.|+++.| .+...|.+++++
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNM 90 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhh
Confidence 344455444457788888887666552 234445588888888888888888888888888888887 788888888888
Q ss_pred CCcceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcC
Q 044882 223 AKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKN 302 (815)
Q Consensus 223 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 302 (815)
.+|++|.|.+|. +..+|.++..+++|+.|
T Consensus 91 ~~l~~lnL~~n~-l~~lP~~~~~lknl~~L-------------------------------------------------- 119 (1081)
T KOG0618|consen 91 RNLQYLNLKNNR-LQSLPASISELKNLQYL-------------------------------------------------- 119 (1081)
T ss_pred hcchhheeccch-hhcCchhHHhhhccccc--------------------------------------------------
Confidence 888888888777 77777776666555555
Q ss_pred CceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCC
Q 044882 303 LRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQ 382 (815)
Q Consensus 303 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 382 (815)
++++|....+|..+. .+..++.+..++|.....++..+
T Consensus 120 ---------------------------------------dlS~N~f~~~Pl~i~--~lt~~~~~~~s~N~~~~~lg~~~- 157 (1081)
T KOG0618|consen 120 ---------------------------------------DLSFNHFGPIPLVIE--VLTAEEELAASNNEKIQRLGQTS- 157 (1081)
T ss_pred ---------------------------------------ccchhccCCCchhHH--hhhHHHHHhhhcchhhhhhcccc-
Confidence 233333445565554 36667777777773333333221
Q ss_pred CCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcc-eeeeccCcccccCCC
Q 044882 383 LPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLR-ELHILRCSKLKGTFP 461 (815)
Q Consensus 383 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~lp 461 (815)
.+.+++..+..-..+.. ....++ .|++.+ +++. ...
T Consensus 158 ---ik~~~l~~n~l~~~~~~--------------------------------------~i~~l~~~ldLr~-N~~~-~~d 194 (1081)
T KOG0618|consen 158 ---IKKLDLRLNVLGGSFLI--------------------------------------DIYNLTHQLDLRY-NEME-VLD 194 (1081)
T ss_pred ---chhhhhhhhhcccchhc--------------------------------------chhhhheeeeccc-chhh-hhh
Confidence 55555544421111110 111222 255544 3333 111
Q ss_pred -CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCC
Q 044882 462 -EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSS 540 (815)
Q Consensus 462 -~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 540 (815)
..++.|+.+....+ .|..+.+.+ ++|+.|+..+|...+..+. ....+
T Consensus 195 ls~~~~l~~l~c~rn-----------~ls~l~~~g-----------------~~l~~L~a~~n~l~~~~~~----p~p~n 242 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERN-----------QLSELEISG-----------------PSLTALYADHNPLTTLDVH----PVPLN 242 (1081)
T ss_pred hhhccchhhhhhhhc-----------ccceEEecC-----------------cchheeeeccCcceeeccc----ccccc
Confidence 22333333322222 222222211 6789999999987643332 34578
Q ss_pred cceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCC
Q 044882 541 LEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPC 620 (815)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l 620 (815)
|+.++++++. +..+| -.+..|.+|+.++..+|.+ ...|..+...++|+.|.+.+|. +..+|....++
T Consensus 243 l~~~dis~n~-l~~lp----------~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~ 309 (1081)
T KOG0618|consen 243 LQYLDISHNN-LSNLP----------EWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGL 309 (1081)
T ss_pred ceeeecchhh-hhcch----------HHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCccccc
Confidence 9999999883 33333 2366799999999999999 4456677788999999999996 77788888889
Q ss_pred CCcceEEecccccccccccc-cCCCC-CcCcEEecCCCCCCCCCCC--CCCCCCceEEEcCCcchhhhhhhcCcCcccCC
Q 044882 621 AKLTRLEISSCKRLEALPKG-LHNLT-SLQELTIGRGVELPSLKED--GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFS 696 (815)
Q Consensus 621 ~~L~~L~l~~~~~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 696 (815)
.+|++|++..|.+ ..+|.. +.-.. +|..|+.+.| .+...|.. ...+.|+.|++.+|......+ ..+.+..
T Consensus 310 ~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~----p~l~~~~ 383 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSCF----PVLVNFK 383 (1081)
T ss_pred ceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccch----hhhcccc
Confidence 9999999999985 455553 33333 3788888887 45555544 366889999999998777666 3588999
Q ss_pred CccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCC
Q 044882 697 SLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLP 776 (815)
Q Consensus 697 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 776 (815)
.|+.|++++ |.+.+||. ..+..+..|++|+||| |+++.+|..+..++.|++|...+ +.|..+|+....
T Consensus 384 hLKVLhLsy--NrL~~fpa--------s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l 451 (1081)
T KOG0618|consen 384 HLKVLHLSY--NRLNSFPA--------SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQL 451 (1081)
T ss_pred ceeeeeecc--cccccCCH--------HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechhhhhc
Confidence 999999999 99999998 4457889999999999 89999999999999999999987 799999987778
Q ss_pred CccceeeecCCcchHHHHhccCCCccccccc
Q 044882 777 SSLLQLDIWGCPLIEEKCRKDGGQYWDLLTH 807 (815)
Q Consensus 777 ~~L~~L~i~~c~~l~~~~~~~~~~~w~~~~~ 807 (815)
+.|+.+|++.+ .|+..-. .....|+++.+
T Consensus 452 ~qL~~lDlS~N-~L~~~~l-~~~~p~p~Lky 480 (1081)
T KOG0618|consen 452 PQLKVLDLSCN-NLSEVTL-PEALPSPNLKY 480 (1081)
T ss_pred CcceEEecccc-hhhhhhh-hhhCCCcccce
Confidence 99999999854 4444333 22344544443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-26 Score=231.86 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=85.6
Q ss_pred CCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCC
Q 044882 537 TNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEG 616 (815)
Q Consensus 537 ~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 616 (815)
.+++|+.|.+++.... ...+|++|. ++.+|..+++|.|++. ..|+.+.++++|+.|+|++|. ++.+..+
T Consensus 195 smtsL~vLhms~TqRT----l~N~Ptsld-----~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~-iteL~~~ 263 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRT----LDNIPTSLD-----DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK-ITELNMT 263 (1255)
T ss_pred cchhhhhhhcccccch----hhcCCCchh-----hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc-eeeeecc
Confidence 3445555555544321 113443432 3456666677666654 335566677777777777775 3444444
Q ss_pred CCCCCCcceEEecccccccccccccCCCCCcCcEEecCCC-CCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcCcCccc
Q 044882 617 GLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGV-ELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHR 694 (815)
Q Consensus 617 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 694 (815)
.....+|++|++++|+ +..+|..+..+++|+.|.+.+|. ....+|++ |.+.+|+.+...+|..-- .|.++.+
T Consensus 264 ~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-----VPEglcR 337 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-----VPEGLCR 337 (1255)
T ss_pred HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-----Cchhhhh
Confidence 4555677777777776 45677777777777777777763 12223322 444455555554442111 1234444
Q ss_pred CCCccEEEEeccCCCcccCC
Q 044882 695 FSSLRQLTIINCDDDMVSFP 714 (815)
Q Consensus 695 l~~L~~L~l~~~~~~~~~~~ 714 (815)
+..|+.|.++. |.+..+|
T Consensus 338 C~kL~kL~L~~--NrLiTLP 355 (1255)
T KOG0444|consen 338 CVKLQKLKLDH--NRLITLP 355 (1255)
T ss_pred hHHHHHhcccc--cceeech
Confidence 45555554443 4444444
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=173.27 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=56.0
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccC
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 232 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 232 (815)
..-.+|+++++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 335678888888888887775 3788888888888888753 467888888887 67777753 35677777777
Q ss_pred CCcccccc
Q 044882 233 TKSLEEMP 240 (815)
Q Consensus 233 ~~~l~~~p 240 (815)
|. +..+|
T Consensus 272 N~-L~~Lp 278 (788)
T PRK15387 272 NP-LTHLP 278 (788)
T ss_pred Cc-hhhhh
Confidence 75 44444
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-17 Score=161.85 Aligned_cols=107 Identities=27% Similarity=0.319 Sum_probs=74.2
Q ss_pred cccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCC-CCCCccc-hhhhccCCCcEEeccCCccccccchhhcCc
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSG-TEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNL 222 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 222 (815)
+..|..+++||.|||++|.|+.+ |++|..+..|..|-+.+ |+|+.+| ..|++|..|+.|.+.-|..-......+..|
T Consensus 84 ~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL 163 (498)
T KOG4237|consen 84 PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDL 163 (498)
T ss_pred hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHh
Confidence 34557777777777777777766 77777777777666665 6777777 566777777777777763333334556777
Q ss_pred CCcceeeccCCCcccccccc-ccccccccccc
Q 044882 223 AKLHHLKNSNTKSLEEMPVG-IGRLTSLQTLC 253 (815)
Q Consensus 223 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~ 253 (815)
++|..|.+.+|. ++.++.+ +..+.+++++.
T Consensus 164 ~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 164 PSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhcchhcccchh-hhhhccccccchhccchHh
Confidence 777777777776 6667664 66677777664
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-17 Score=158.00 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=119.3
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccC
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE 615 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 615 (815)
..+++|++|++++| .++.+..+ .+.+...++.|.+..|.+..+....|.++..|+.|+|++|++....|.
T Consensus 271 ~~L~~L~~lnlsnN-~i~~i~~~---------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNN-KITRIEDG---------AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred hhcccceEeccCCC-ccchhhhh---------hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 56667777777666 23333322 234555666666666776666666677777777777777776666677
Q ss_pred CCCCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhh--hh-----
Q 044882 616 GGLPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSM--IE----- 687 (815)
Q Consensus 616 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~----- 687 (815)
+|..+.+|.+|.+-.|++.-.-. .+++. .+.... ....|..+.+..++.+.+++...-.... ++
T Consensus 341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~ 412 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCL 412 (498)
T ss_pred cccccceeeeeehccCcccCccchHHHHH-------HHhhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCC
Confidence 77777777777776665422100 00000 001111 1222333445556666665543221110 00
Q ss_pred -cCcCcccCCCccEE-EEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCC
Q 044882 688 -RGRGFHRFSSLRQL-TIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCP 765 (815)
Q Consensus 688 -~~~~~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 765 (815)
.+.....++.+.+. ..+ +..+..+|. +.|..-++|++.+ +.++.+|.. .+.+| .+++++ +
T Consensus 413 ~s~~cP~~c~c~~tVvRcS--nk~lk~lp~-----------~iP~d~telyl~g-n~~~~vp~~--~~~~l-~~dls~-n 474 (498)
T KOG4237|consen 413 TSSPCPPPCTCLDTVVRCS--NKLLKLLPR-----------GIPVDVTELYLDG-NAITSVPDE--LLRSL-LLDLSN-N 474 (498)
T ss_pred CCCCCCCCcchhhhhHhhc--ccchhhcCC-----------CCCchhHHHhccc-chhcccCHH--HHhhh-hccccc-C
Confidence 00112233444433 222 366677776 5677888999999 788899876 56778 889987 5
Q ss_pred CCcccCCCCC--CCccceeeecC
Q 044882 766 KLKYFPEKGL--PSSLLQLDIWG 786 (815)
Q Consensus 766 ~l~~l~~~~~--~~~L~~L~i~~ 786 (815)
.+..+....+ .+.|.+|.+++
T Consensus 475 ~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 475 RISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred ceehhhcccccchhhhheeEEec
Confidence 6766655333 24555665553
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=158.19 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCccceEEecCCCCCccccccCCCCCCCCeeeeCCC
Q 044882 729 PASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 729 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
+.+|+.|++++ |.++.+|..+..+++|+.|+++++
T Consensus 421 ~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 421 PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC
Confidence 34556666666 556666666666666666666664
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-16 Score=134.36 Aligned_cols=106 Identities=29% Similarity=0.436 Sum_probs=87.7
Q ss_pred cccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCc
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 225 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 225 (815)
.+.+..+.+++.|-|++|+++.+|..|..+++|++|++++|+|+++|.+|+.+++|++|+++-| .+..+|.+||.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchh
Confidence 3445677788889999999999999999999999999999999999999999999999999988 888999999999999
Q ss_pred ceeeccCCCccc-ccccccccccccccc
Q 044882 226 HHLKNSNTKSLE-EMPVGIGRLTSLQTL 252 (815)
Q Consensus 226 ~~L~l~~~~~l~-~~p~~i~~L~~L~~L 252 (815)
+.||+.+|..-+ .+|..+--|+.|+-|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHH
Confidence 999999887322 456555555555544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-14 Score=163.11 Aligned_cols=148 Identities=28% Similarity=0.329 Sum_probs=109.7
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCC--ccccCcc-ccCCccCCEEecCCCC-CCccch
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYH--IFELPDS-IGDLRYLRYLNLSGTE-IRTLPE 193 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--i~~lp~~-~~~l~~L~~L~L~~~~-i~~lp~ 193 (815)
...+...+|......+.. ..++.. ...+.|++|-+.+|. +..++.. |..++.||+|||++|. +.++|.
T Consensus 518 ~~~~~~~~rr~s~~~~~~-------~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKI-------EHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccchhheeEEEEeccch-------hhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 334455667666655431 112222 344479999999986 6677644 7889999999999874 789999
Q ss_pred hhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeec-cCCCCCcccccccc
Q 044882 194 SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVG-KGSGSGLRELKLLT 272 (815)
Q Consensus 194 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L~ 272 (815)
+|++|.+||+|+++++ .+..+|.++++|++|.+|++..+..+..+|.....|.+||+|..+... ..+...+.++..|+
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 9999999999999999 899999999999999999999998777776667779999999766554 22233344444444
Q ss_pred cc
Q 044882 273 HL 274 (815)
Q Consensus 273 ~L 274 (815)
+|
T Consensus 669 ~L 670 (889)
T KOG4658|consen 669 HL 670 (889)
T ss_pred ch
Confidence 33
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-14 Score=155.36 Aligned_cols=83 Identities=19% Similarity=0.363 Sum_probs=67.0
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccC
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 232 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 232 (815)
.+...|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 356789999999999987764 589999999999999997765 58999999998 7888887664 4789999998
Q ss_pred CCccccccccc
Q 044882 233 TKSLEEMPVGI 243 (815)
Q Consensus 233 ~~~l~~~p~~i 243 (815)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 87 66666544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-16 Score=132.80 Aligned_cols=129 Identities=26% Similarity=0.384 Sum_probs=113.5
Q ss_pred ccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhh
Q 044882 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV 195 (815)
Q Consensus 116 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 195 (815)
.+.+.++++...|.+..+. ....|+.+..+++|++|++.+|+|+++|.+++.++.||.|+++-|.+..+|..+
T Consensus 26 ~~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 3445566677777666543 256788999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcEEeccCCccc--cccchhhcCcCCcceeeccCCCccccccccccccccccccc
Q 044882 196 NKLYNLHSLLLEDCDRL--KKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 196 ~~L~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
|.++.|++|||.+| .+ ..+|..|-.++.|+.|++++|. .+-+|.++++|++||.|.
T Consensus 99 gs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 99 GSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILS 156 (264)
T ss_pred CCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEe
Confidence 99999999999998 44 4689999999999999999998 899999999999999983
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-13 Score=152.65 Aligned_cols=231 Identities=22% Similarity=0.306 Sum_probs=139.9
Q ss_pred CCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccccc
Q 044882 506 GHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQ 585 (815)
Q Consensus 506 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~ 585 (815)
.+|..+|+.|+.|++++|. +..+|... ..+|+.|++++|. ++.+|. .+| +.|+.|++++|.+
T Consensus 192 sLP~~Ip~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~N~-LtsLP~-~l~-----------~~L~~L~Ls~N~L 253 (754)
T PRK15370 192 TIPACIPEQITTLILDNNE-LKSLPENL----QGNIKTLYANSNQ-LTSIPA-TLP-----------DTIQEMELSINRI 253 (754)
T ss_pred cCCcccccCCcEEEecCCC-CCcCChhh----ccCCCEEECCCCc-cccCCh-hhh-----------ccccEEECcCCcc
Confidence 3444455667777777774 55566543 2467777777763 444432 122 2345555555555
Q ss_pred ccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCC
Q 044882 586 SSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDG 665 (815)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 665 (815)
.. +|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++| .++.+|. .
T Consensus 254 ~~-LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~ 322 (754)
T PRK15370 254 TE-LPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN-SLTALPE-T 322 (754)
T ss_pred Cc-CChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC-ccccCCc-c
Confidence 42 233332 467888887765 445666543 47888888887654 3454332 46778888887 4454543 2
Q ss_pred CCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcc
Q 044882 666 LPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLER 745 (815)
Q Consensus 666 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 745 (815)
.+++|+.|++++|..... + ..+ .++|+.|++++ +++..+|. ..+++|+.|+|++ +.++.
T Consensus 323 l~~sL~~L~Ls~N~Lt~L-P----~~l--~~sL~~L~Ls~--N~L~~LP~-----------~lp~~L~~LdLs~-N~Lt~ 381 (754)
T PRK15370 323 LPPGLKTLEAGENALTSL-P----ASL--PPELQVLDVSK--NQITVLPE-----------TLPPTITTLDVSR-NALTN 381 (754)
T ss_pred ccccceeccccCCccccC-C----hhh--cCcccEEECCC--CCCCcCCh-----------hhcCCcCEEECCC-CcCCC
Confidence 346788888887754321 1 112 25788888887 45666664 2356788888888 46777
Q ss_pred ccccCCCCCCCCeeeeCCCCCCcccCCC-----CCCCccceeeecCCcc
Q 044882 746 LSSSIVDLQNLASLYLGDCPKLKYFPEK-----GLPSSLLQLDIWGCPL 789 (815)
Q Consensus 746 l~~~~~~l~~L~~L~i~~c~~l~~l~~~-----~~~~~L~~L~i~~c~~ 789 (815)
+|..+. .+|+.|++++ +++..+|.. +..+++..|++.++|-
T Consensus 382 LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 382 LPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 776543 3688888887 467777651 1235677788888774
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-12 Score=130.66 Aligned_cols=188 Identities=19% Similarity=0.136 Sum_probs=90.5
Q ss_pred ccccccccccccccccCcccccCCCC---CCceEEeccCCCcc----cccCCCCCC-CCcceEEeccccccc----cccc
Q 044882 572 CDNIRTLTVEEGIQSSSSRSGLHNLR---QLQEISIRRCGNLV----SFPEGGLPC-AKLTRLEISSCKRLE----ALPK 639 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~~~~~~~l~---~L~~L~l~~~~~l~----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~ 639 (815)
+++|+.+++++|.+.+..+..+..+. +|++|++++|.... .+...+..+ ++|++|++++|.+.+ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 44555555555555443333333333 37777777765431 111223334 677777777776552 2233
Q ss_pred ccCCCCCcCcEEecCCCCCCC----CC-CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCC
Q 044882 640 GLHNLTSLQELTIGRGVELPS----LK-EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFP 714 (815)
Q Consensus 640 ~~~~l~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 714 (815)
.+..+++|++|++++|..... ++ .....++|++|++++|.............+..+++|+.|++++| .+....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n--~l~~~~ 237 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN--NLTDAG 237 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC--cCchHH
Confidence 455566777777777632210 00 01223567777777765432222111134455667777777762 222100
Q ss_pred CCccccccccCCCCCCccceEEecCCCCC----ccccccCCCCCCCCeeeeCCC
Q 044882 715 PKADDKRLGTALPLPASLTSLWISGFPNL----ERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 715 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~i~~c 764 (815)
.....+. .....+.|+.|++++|..- ..+...+..+++|++++++++
T Consensus 238 ~~~l~~~---~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 238 AAALASA---LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHH---HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 0000000 0011356777777765322 123334445566777777663
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-12 Score=130.55 Aligned_cols=195 Identities=23% Similarity=0.183 Sum_probs=123.8
Q ss_pred ccccCCCCCCceEEeccCCCcccccCCCCCC---CCcceEEeccccccc----ccccccCCC-CCcCcEEecCCCCCCC-
Q 044882 590 RSGLHNLRQLQEISIRRCGNLVSFPEGGLPC---AKLTRLEISSCKRLE----ALPKGLHNL-TSLQELTIGRGVELPS- 660 (815)
Q Consensus 590 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~- 660 (815)
+..+..+++|+.|++++|......+..+..+ ++|++|++++|.+.. .+...+..+ ++|+.|++++|.....
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 3456678999999999998654444333333 459999999998763 233345666 8999999999953311
Q ss_pred ---CC-CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEE
Q 044882 661 ---LK-EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLW 736 (815)
Q Consensus 661 ---~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 736 (815)
+. ....+.+|++|++++|..........+..+..+++|+.|++++| .+..... ..+...+...++|+.|+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~----~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN--GLTDEGA----SALAETLASLKSLEVLN 227 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC--ccChHHH----HHHHHHhcccCCCCEEe
Confidence 11 11345689999999997553222221234556689999999983 3322111 11222345678999999
Q ss_pred ecCCCCCcc-----ccccC-CCCCCCCeeeeCCCCCCc-----ccCC-CCCCCccceeeecCCcchHH
Q 044882 737 ISGFPNLER-----LSSSI-VDLQNLASLYLGDCPKLK-----YFPE-KGLPSSLLQLDIWGCPLIEE 792 (815)
Q Consensus 737 l~~c~~l~~-----l~~~~-~~l~~L~~L~i~~c~~l~-----~l~~-~~~~~~L~~L~i~~c~~l~~ 792 (815)
+++|+ ++. +...+ ...+.|++|++++| .++ .+.. ....++|+.+++++|+--.+
T Consensus 228 ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 228 LGDNN-LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCc-CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 99964 442 11111 13589999999997 443 1111 11236899999999875433
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-10 Score=102.67 Aligned_cols=132 Identities=25% Similarity=0.289 Sum_probs=55.8
Q ss_pred cccccCCCceEEccccCCcCcCCCcccccccccc-CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhh
Q 044882 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV 195 (815)
Q Consensus 117 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 195 (815)
+...+..++|.|.+.++. ......+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.++..+
T Consensus 13 ~~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 344455677888777654 23345564 5789999999999999885 5888999999999999999997666
Q ss_pred -hccCCCcEEeccCCccccccc--hhhcCcCCcceeeccCCCccccccc----ccccccccccccceeecc
Q 044882 196 -NKLYNLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVVGK 259 (815)
Q Consensus 196 -~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~ 259 (815)
..+++|++|++++| .+..+. ..+..+++|++|++.+|. +...+. -+..+++|+.|+...+..
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 46999999999998 665543 346788999999999998 444442 277889999998665543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-12 Score=123.30 Aligned_cols=281 Identities=17% Similarity=0.272 Sum_probs=124.4
Q ss_pred CCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCccccc--
Q 044882 381 GQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKG-- 458 (815)
Q Consensus 381 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-- 458 (815)
...|++++|.+.+|.+++...-..+.. -+++|+.+.+..|..+.+..-.. -...+++|++++++.|+.+++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~----~C~~l~~l~L~~c~~iT~~~Lk~---la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLAR----YCRKLRHLNLHSCSSITDVSLKY---LAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHH----hcchhhhhhhcccchhHHHHHHH---HHHhhhhHHHhhhccCchhhcCc
Confidence 344555555555555443322111111 13444444444444443322100 011577777777777777664
Q ss_pred --CCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcC
Q 044882 459 --TFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCG 536 (815)
Q Consensus 459 --~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 536 (815)
.+..+...++.+...+|.. .....+....... .-+.++++..|..++....+....
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e---------------------~~le~l~~~~~~~-~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLE---------------------LELEALLKAAAYC-LEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred chHHhccchhhhhhhhccccc---------------------ccHHHHHHHhccC-hHhhccchhhhccccchHHHHHhh
Confidence 1223333344444444433 2222211111111 123344444555555544444445
Q ss_pred CCCCcceEEEeccCCchhhhccccc---cccceEecccccccccccccccccccCccccc-CCCCCCceEEeccCCCccc
Q 044882 537 TNSSLEDMSIRQCHSLTYIAAVQLP---LSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGL-HNLRQLQEISIRRCGNLVS 612 (815)
Q Consensus 537 ~l~~L~~L~l~~~~~l~~~~~~~l~---~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~ 612 (815)
.+..|+.|..++|..+++.+...+. .+|+.+.+..|..+....+ ..+ .+++.|+.+++..|.....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f----------t~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF----------TMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh----------hhhhcCChhhhhhcccccceehh
Confidence 5556666666666555444433221 1344444444443222111 011 2356666666666643221
Q ss_pred --ccCCCCCCCCcceEEeccccccccc-----ccccCCCCCcCcEEecCCCCCCCC--CCCCCCCCCceEEEcCCcchhh
Q 044882 613 --FPEGGLPCAKLTRLEISSCKRLEAL-----PKGLHNLTSLQELTIGRGVELPSL--KEDGLPTNLQSLTIEGNMEIWK 683 (815)
Q Consensus 613 --~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~ 683 (815)
+-.....++.|++|.+++|...+.. ...-.++..|+.+.+++|+.++.- .....+++|+.+++.+|.....
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 2222334566666666666543322 111234455666666666655431 1123455666666666655443
Q ss_pred hhhhcCcCcccCCCccEEE
Q 044882 684 SMIERGRGFHRFSSLRQLT 702 (815)
Q Consensus 684 ~~~~~~~~~~~l~~L~~L~ 702 (815)
.... ..-+++|+++...
T Consensus 442 ~~i~--~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 442 EAIS--RFATHLPNIKVHA 458 (483)
T ss_pred hhhH--HHHhhCccceehh
Confidence 3322 2233444444433
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-11 Score=117.97 Aligned_cols=89 Identities=16% Similarity=0.318 Sum_probs=47.0
Q ss_pred CCccEEEEecccCccc-----cCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCC
Q 044882 465 PALEMLVIEGCEELLV-----SVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNS 539 (815)
Q Consensus 465 ~~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 539 (815)
.-|+.|.+.+|..... ....+|+++.|.+.+|..+.......+... .+.|+++++..|..++...-...+..++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~-C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY-CRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh-cchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 3466777777765422 223466666666666665543332222222 2456666666666555554443335566
Q ss_pred CcceEEEeccCCchh
Q 044882 540 SLEDMSIRQCHSLTY 554 (815)
Q Consensus 540 ~L~~L~l~~~~~l~~ 554 (815)
+|++|+++.|+.++.
T Consensus 217 kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISG 231 (483)
T ss_pred hHHHhhhccCchhhc
Confidence 666666666655443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-10 Score=117.91 Aligned_cols=106 Identities=28% Similarity=0.490 Sum_probs=71.5
Q ss_pred cccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcC
Q 044882 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLA 223 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 223 (815)
.+|..+..+..|..+.|..|.+..+|.+++++..|.+|||+.|++..+|..++.|+ |+.|-+++| +++.+|.+++.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccch
Confidence 34555555666666667777776677777777777777777777777776666665 666666666 6667777777666
Q ss_pred CcceeeccCCCcccccccccccccccccc
Q 044882 224 KLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 224 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+|.+||.+.|. +..+|..++.+.+|+.|
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 77777777666 66666666666666665
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.6e-09 Score=112.29 Aligned_cols=104 Identities=33% Similarity=0.484 Sum_probs=91.6
Q ss_pred cccCCCcccEEEcCCCCccccCccccCCc-cCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcc
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLR-YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLH 226 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 226 (815)
.+..++.++.|++.++.++.+|.....+. +|+.|++++|++..+|..++.+++|+.|++++| .+..+|...+.+++|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 34556789999999999999998888885 999999999999999989999999999999999 8999999877999999
Q ss_pred eeeccCCCccccccccccccccccccc
Q 044882 227 HLKNSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 227 ~L~l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
.|++++|. +..+|..++.+..|+++.
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhh
Confidence 99999998 888888776666677774
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.8e-09 Score=93.56 Aligned_cols=102 Identities=28% Similarity=0.440 Sum_probs=36.1
Q ss_pred cccCCCcccEEEcCCCCccccCcccc-CCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhh-cCcCCc
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIG-DLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAKL 225 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L 225 (815)
.+.+...+|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..++..+ ..+++|
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 3456667999999999999884 565 6899999999999999985 6888999999999999 888887666 469999
Q ss_pred ceeeccCCCccccccc--cccccccccccc
Q 044882 226 HHLKNSNTKSLEEMPV--GIGRLTSLQTLC 253 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~--~i~~L~~L~~L~ 253 (815)
++|++++|+ +..+.. .++.+++|+.|+
T Consensus 91 ~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 91 QELYLSNNK-ISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE
T ss_pred CEEECcCCc-CCChHHhHHHHcCCCcceee
Confidence 999999998 555432 244555555553
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-09 Score=107.65 Aligned_cols=210 Identities=17% Similarity=0.102 Sum_probs=123.6
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc--cccCCCCCCceEEeccCCCcccc
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR--SGLHNLRQLQEISIRRCGNLVSF 613 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~ 613 (815)
.++.+|+++.+.+|+- ...+.. -....|++++.|+++.|-+....+ .....+|+|+.|+|+.|....-.
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~--------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIE--------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hhHHhhhheeecCccc-cccchh--------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 4566667777766632 111110 123457777788887776654332 23456889999999988643222
Q ss_pred cC-CCCCCCCcceEEeccccccc-ccccccCCCCCcCcEEecCCCCCCCC-CCCCCCCCCceEEEcCCcchhhhhhhcCc
Q 044882 614 PE-GGLPCAKLTRLEISSCKRLE-ALPKGLHNLTSLQELTIGRGVELPSL-KEDGLPTNLQSLTIEGNMEIWKSMIERGR 690 (815)
Q Consensus 614 ~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 690 (815)
.. .-..+++|+.|.|+.|.+.. .+-.....+|+|+.|++++|..+... .....+..|++|+|++|+.+..... .
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~ 265 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---Y 265 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---c
Confidence 11 12246789999999998753 22233557899999999998533221 1224667899999999887653321 3
Q ss_pred CcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc--cCCCCCCCCeeeeC
Q 044882 691 GFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS--SIVDLQNLASLYLG 762 (815)
Q Consensus 691 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~ 762 (815)
....++.|+.|.++. ..+.++.... .........+++|++|++.. |.+...+. .+..+++|+.|.+.
T Consensus 266 ~~~~l~~L~~Lnls~--tgi~si~~~d--~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSS--TGIASIAEPD--VESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccchhhhhccc--cCcchhcCCC--ccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcc
Confidence 566788888888887 3333332210 11111224567777777777 44444432 44455666666654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-10 Score=112.84 Aligned_cols=196 Identities=26% Similarity=0.251 Sum_probs=147.9
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+..-...||+.|++..+|..++.+..|+.|.|++|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|-
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 345556788999999999999999999999999999999999999999999999999999 8999999998774 89999
Q ss_pred ccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeE
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 309 (815)
+++|+ ++.+|.+++.+..|..|+...... ......+.++..|+.|.++
T Consensus 150 ~sNNk-l~~lp~~ig~~~tl~~ld~s~nei-------------------------------~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 150 VSNNK-LTSLPEEIGLLPTLAHLDVSKNEI-------------------------------QSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred EecCc-cccCCcccccchhHHHhhhhhhhh-------------------------------hhchHHhhhHHHHHHHHHh
Confidence 99998 999999999888888775322211 1112223444455555554
Q ss_pred EccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCC---CCCCCCc
Q 044882 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPS---VGQLPSL 386 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~---l~~l~~L 386 (815)
.|.. ...++.+. .-.|.+|+++.|++..+|..|. .++.|++|.|.+|.+...... -|..---
T Consensus 198 Rn~l------------~~lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 198 RNHL------------EDLPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred hhhh------------hhCCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCCCCCChHHHHhccceeee
Confidence 4432 22333344 3368899999999999999887 589999999999986643322 2444445
Q ss_pred CeeeeccC
Q 044882 387 KHLAVCGM 394 (815)
Q Consensus 387 ~~L~l~~~ 394 (815)
|+|++.-|
T Consensus 263 KyL~~qA~ 270 (722)
T KOG0532|consen 263 KYLSTQAC 270 (722)
T ss_pred eeecchhc
Confidence 77777666
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=96.59 Aligned_cols=163 Identities=25% Similarity=0.413 Sum_probs=101.6
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEE
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLT 674 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 674 (815)
.+.+++.|++++| .++.+|. + .++|++|.+++|..+..+|+.+ .++|++|++++|..+..+ +++|+.|+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEE
Confidence 3567778888877 4666662 1 2368888888887777777654 257888888888666543 35688888
Q ss_pred EcCCcchhhhhhhcCcCcccC-CCccEEEEeccCCC-cccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCC
Q 044882 675 IEGNMEIWKSMIERGRGFHRF-SSLRQLTIINCDDD-MVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVD 752 (815)
Q Consensus 675 l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 752 (815)
++++... .+..+ ++|+.|.+.+.+.. ...++. ..|++|+.|++++|..+. +|..+.
T Consensus 119 L~~n~~~---------~L~~LPssLk~L~I~~~n~~~~~~lp~-----------~LPsSLk~L~Is~c~~i~-LP~~LP- 176 (426)
T PRK15386 119 IKGSATD---------SIKNVPNGLTSLSINSYNPENQARIDN-----------LISPSLKTLSLTGCSNII-LPEKLP- 176 (426)
T ss_pred eCCCCCc---------ccccCcchHhheecccccccccccccc-----------ccCCcccEEEecCCCccc-Cccccc-
Confidence 7654321 12233 36777777541111 111111 356789999999887553 444444
Q ss_pred CCCCCeeeeCCCCCC-cccCCCCCCCccceeeecCCcchHH
Q 044882 753 LQNLASLYLGDCPKL-KYFPEKGLPSSLLQLDIWGCPLIEE 792 (815)
Q Consensus 753 l~~L~~L~i~~c~~l-~~l~~~~~~~~L~~L~i~~c~~l~~ 792 (815)
.+|+.|+++.+... -.++...+|+++ .|++.+|.++..
T Consensus 177 -~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 177 -ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred -ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 68888988764311 134455677788 888888866544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.8e-09 Score=97.00 Aligned_cols=81 Identities=28% Similarity=0.279 Sum_probs=36.9
Q ss_pred CCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeecc
Q 044882 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 231 (815)
.+.|+.+||++|.|+.+.++..-++.+|+|++++|.|..+- .+..|++|+.|||++| .+..+...=.+|-+.+.|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehh
Confidence 34444555555555544444444445555555555544442 2444445555555544 333333222334444444444
Q ss_pred CCC
Q 044882 232 NTK 234 (815)
Q Consensus 232 ~~~ 234 (815)
+|.
T Consensus 361 ~N~ 363 (490)
T KOG1259|consen 361 QNK 363 (490)
T ss_pred hhh
Confidence 443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=4e-08 Score=73.01 Aligned_cols=57 Identities=30% Similarity=0.510 Sum_probs=39.9
Q ss_pred CcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCC
Q 044882 153 QRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDC 209 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 209 (815)
++|++|++++|+++.+| +.|..+++|++|++++|.++.+| ..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777777777775 45677777777777777777665 46677777777777766
|
... |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-08 Score=105.12 Aligned_cols=125 Identities=26% Similarity=0.366 Sum_probs=102.0
Q ss_pred cccCCCceEEccccCCcCcCCCccccccccccCCC-cccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 119 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 119 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
....+.+..|.+..+. ...+++....+. +|+.|++++|.+..+|..++.+++|+.|++++|++.++|...+.
T Consensus 112 ~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 3345667777666543 134444556664 99999999999999998999999999999999999999998889
Q ss_pred cCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+.+|+.|++++| .+..+|..++.+..|++|.+++|. ....+..+.++.++..+
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 999999999999 899999988888889999999996 45555566666666555
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.1e-09 Score=103.55 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=105.2
Q ss_pred cCCCcceeeeccCccccc----CCCCCCCCccEEEEecccCc-----cccCCCCCCcceEEeCCCCccccccccCCCCCC
Q 044882 441 GFPKLRELHILRCSKLKG----TFPEHLPALEMLVIEGCEEL-----LVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQ 511 (815)
Q Consensus 441 ~~~~L~~L~l~~c~~l~~----~lp~~l~~L~~L~l~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 511 (815)
.+.+|+.+.+.+|+ +.. ...+.+++++.|+++++-.. ......+|+|+.|+++.+..
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl------------- 184 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL------------- 184 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc-------------
Confidence 67888888888864 221 12245777777777765311 12223455555555544432
Q ss_pred ccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCccc
Q 044882 512 NSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRS 591 (815)
Q Consensus 512 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~ 591 (815)
..-...... ..+++|+.|.++.|..- .-....+ +..||+|++|+++.|........
T Consensus 185 --------------~~~~~s~~~-~~l~~lK~L~l~~CGls-~k~V~~~--------~~~fPsl~~L~L~~N~~~~~~~~ 240 (505)
T KOG3207|consen 185 --------------SNFISSNTT-LLLSHLKQLVLNSCGLS-WKDVQWI--------LLTFPSLEVLYLEANEIILIKAT 240 (505)
T ss_pred --------------cCCccccch-hhhhhhheEEeccCCCC-HHHHHHH--------HHhCCcHHHhhhhcccccceecc
Confidence 211111111 34556666666666321 1000000 22456666666666643222222
Q ss_pred ccCCCCCCceEEeccCCCccccc--CCCCCCCCcceEEecccccccc-cccc-----cCCCCCcCcEEecCCCC--CCCC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSFP--EGGLPCAKLTRLEISSCKRLEA-LPKG-----LHNLTSLQELTIGRGVE--LPSL 661 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~-----~~~l~~L~~L~l~~~~~--~~~~ 661 (815)
....+..|+.|+|++|+... ++ .....++.|+.|+++.|.+... .|+. ...+++|++|++..|+. ...+
T Consensus 241 ~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 241 STKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred hhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence 33446677777777776433 33 2455577777777777765432 2222 34677788888877743 2333
Q ss_pred CCCCCCCCCceEEEcCCcc
Q 044882 662 KEDGLPTNLQSLTIEGNME 680 (815)
Q Consensus 662 ~~~~~~~~L~~L~l~~~~~ 680 (815)
.....+++|+.|.+..|+.
T Consensus 320 ~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYL 338 (505)
T ss_pred chhhccchhhhhhcccccc
Confidence 2334556677777666654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.8e-07 Score=102.62 Aligned_cols=93 Identities=25% Similarity=0.364 Sum_probs=84.1
Q ss_pred cccEEEcCCCCcc-ccCccccCCccCCEEecCCCCCC-ccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeecc
Q 044882 154 RLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231 (815)
Q Consensus 154 ~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 231 (815)
.++.|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999988 67999999999999999999997 889999999999999999996556899999999999999999
Q ss_pred CCCcccccccccccc
Q 044882 232 NTKSLEEMPVGIGRL 246 (815)
Q Consensus 232 ~~~~l~~~p~~i~~L 246 (815)
+|...+.+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999777899887653
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-07 Score=103.39 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=63.6
Q ss_pred cCCEEecCCCCCC-ccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccce
Q 044882 177 YLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNF 255 (815)
Q Consensus 177 ~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 255 (815)
.++.|+|++|.+. .+|..++++++|++|+|++|.....+|..++.+++|+.|++++|...+.+|..++++++|+.|+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887 778888888888888888884445788888888888888888888666788888888888888543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.4e-07 Score=66.12 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=39.8
Q ss_pred CCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCC
Q 044882 597 RQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGV 656 (815)
Q Consensus 597 ~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 656 (815)
|+|++|++++|. +..+| ..+..+++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456777777774 33444 456667777777777777665555667777777777777773
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-07 Score=89.63 Aligned_cols=123 Identities=25% Similarity=0.256 Sum_probs=97.5
Q ss_pred cCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCC
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYN 200 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 200 (815)
.+..|..+.+..+. ...+..+..-.+.+|+|++++|+|..+. .+..|++|+.|||++|.+.++-.+-.+|-|
T Consensus 282 TWq~LtelDLS~N~-------I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-------ITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccc-------hhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcC
Confidence 34455556555432 1334455566789999999999998874 488999999999999999988777789999
Q ss_pred CcEEeccCCccccccchhhcCcCCcceeeccCCCcccccc--cccccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMP--VGIGRLTSLQTLCN 254 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~ 254 (815)
.++|.|++| .+..+. ++++|.+|..||+++|+ ++.+. .+||+|+.|+++..
T Consensus 354 IKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 354 IKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred Eeeeehhhh-hHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhh
Confidence 999999998 777775 48999999999999998 66654 45999999998853
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-06 Score=88.13 Aligned_cols=137 Identities=30% Similarity=0.397 Sum_probs=96.7
Q ss_pred CCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCc
Q 044882 619 PCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSL 698 (815)
Q Consensus 619 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 698 (815)
.+.+++.|++++|. +..+|. -.++|++|++++|..++.+|. ..+++|++|++++|..+... .++|
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sL----------P~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGL----------PESV 114 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccc----------cccc
Confidence 35789999999995 566662 234799999999999888775 35689999999999655411 2468
Q ss_pred cEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCC--ccccccCCCCCCCCeeeeCCCCCCcccCCCCCC
Q 044882 699 RQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNL--ERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLP 776 (815)
Q Consensus 699 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l--~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 776 (815)
+.|++.+ +....++. .|++|+.|.+.+++.. ..+|..+ -++|++|+|++|..+. +| .++|
T Consensus 115 e~L~L~~--n~~~~L~~------------LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP-~~LP 176 (426)
T PRK15386 115 RSLEIKG--SATDSIKN------------VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LP-EKLP 176 (426)
T ss_pred ceEEeCC--CCCccccc------------CcchHhheecccccccccccccccc--CCcccEEEecCCCccc-Cc-cccc
Confidence 8888865 44434433 5678999998654322 1222111 1689999999998653 44 3588
Q ss_pred CccceeeecCCc
Q 044882 777 SSLLQLDIWGCP 788 (815)
Q Consensus 777 ~~L~~L~i~~c~ 788 (815)
.+|+.|+++.+.
T Consensus 177 ~SLk~L~ls~n~ 188 (426)
T PRK15386 177 ESLQSITLHIEQ 188 (426)
T ss_pred ccCcEEEecccc
Confidence 999999998753
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.5e-09 Score=98.38 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=93.3
Q ss_pred ccccccccccccccC-cccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccc--cccCCCCCcCcE
Q 044882 574 NIRTLTVEEGIQSSS-SRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALP--KGLHNLTSLQEL 650 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 650 (815)
.++.+|+|...++.. .-..++.+.+|+.|.|.++.....+...++.-.+|+.|+++.|...+... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555555444321 12234556777777777776665555556656677777777776544321 124567777777
Q ss_pred EecCCCCCCCCCCC---CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCC
Q 044882 651 TIGRGVELPSLKED---GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALP 727 (815)
Q Consensus 651 ~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 727 (815)
+++.|...+..-.. .--++|+.|+++|+...-.. +.+..+ ..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-----------------------sh~~tL------------~~ 310 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-----------------------SHLSTL------------VR 310 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh-----------------------hHHHHH------------HH
Confidence 77777433322111 12345666666665421100 000111 12
Q ss_pred CCCccceEEecCCCCCcc-ccccCCCCCCCCeeeeCCCCCCc--ccCCCCCCCccceeeecCC
Q 044882 728 LPASLTSLWISGFPNLER-LSSSIVDLQNLASLYLGDCPKLK--YFPEKGLPSSLLQLDIWGC 787 (815)
Q Consensus 728 ~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~i~~c~~l~--~l~~~~~~~~L~~L~i~~c 787 (815)
..++|..|||+.|..++. ....+..|+.|++|.++.|..|- .+-...-.++|..|++.||
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 345666666666655544 22245566667777777665442 1111223356677776665
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.1e-08 Score=94.45 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=124.8
Q ss_pred cccceEEEeccCCcccCchhhhc---CCCCCcceEEEeccCCchhhhccccccccceE--eccccccccccccccccccc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMC---GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNL--LIHKCDNIRTLTVEEGIQSS 587 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~---~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l--~l~~~~~L~~l~ls~n~~~~ 587 (815)
..++.+++++|..-...... .+ .+.++|+.-++++- .+..+...+|..|+.| .+.+|++|+.+++|+|.+..
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~-i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARA-IAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred CceEEEeccCCchhHHHHHH-HHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 45777777777633222111 11 33345555555433 1111122333344433 25578888888888888765
Q ss_pred Ccccc----cCCCCCCceEEeccCCCcccc-------------cCCCCCCCCcceEEeccccccc----ccccccCCCCC
Q 044882 588 SSRSG----LHNLRQLQEISIRRCGNLVSF-------------PEGGLPCAKLTRLEISSCKRLE----ALPKGLHNLTS 646 (815)
Q Consensus 588 ~~~~~----~~~l~~L~~L~l~~~~~l~~~-------------~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~ 646 (815)
..+.. +.++..|++|.+.+|..-..- ..-...-+.|+++...+|+.-. .+...++..+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 44333 345788888888888632111 1112234678888887776432 12234566677
Q ss_pred cCcEEecCCCCCCCCCC------CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcccc
Q 044882 647 LQELTIGRGVELPSLKE------DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDK 720 (815)
Q Consensus 647 L~~L~l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 720 (815)
|+.+.++.|. +..-.. ...+++|+.|++.+|-............+..+++|++|++++| ..-..-.. ...+
T Consensus 187 leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~-a~~~ 263 (382)
T KOG1909|consen 187 LEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAI-AFVD 263 (382)
T ss_pred cceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHH-HHHH
Confidence 8888887773 221111 1256777777777775544333222234556667777777774 21111000 0000
Q ss_pred ccccCCCCCCccceEEecCCCCCcc-----ccccCCCCCCCCeeeeCCC
Q 044882 721 RLGTALPLPASLTSLWISGFPNLER-----LSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 721 ~l~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~i~~c 764 (815)
.+ -...|+|+.|.+.+| .++. +...+...|.|++|++++|
T Consensus 264 al---~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 264 AL---KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HH---hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 00 013456666666663 3322 2223444666666666664
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-06 Score=59.42 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=15.5
Q ss_pred cCCEEecCCCCCCccchhhhccCCCcEEeccCC
Q 044882 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDC 209 (815)
Q Consensus 177 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 209 (815)
+|++|++++|+|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344555555555555444455555555555554
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.5e-08 Score=93.08 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=54.8
Q ss_pred cCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCC--CCCCCCccEEEEecCCCC
Q 044882 297 LDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFG--DSSFSNLVTLEFENCDMC 374 (815)
Q Consensus 297 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~~~~~ 374 (815)
+..++.|.+|+++|+..+... ....... ..++|++|+++|+.-.-.-..+. ...+++|.+|+|++|...
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~-------Vtv~V~h--ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEK-------VTVAVAH--ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred HHhhhhHhhcCchHhhccchh-------hhHHHhh--hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 566778888888888762111 1111111 23578888888864321111000 014788888888887765
Q ss_pred CC--CCCCCCCCCcCeeeeccCCC
Q 044882 375 TA--LPSVGQLPSLKHLAVCGMSR 396 (815)
Q Consensus 375 ~~--l~~l~~l~~L~~L~l~~~~~ 396 (815)
.. ...+.+++.|++|.++.|..
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcC
Confidence 43 22567788888888888854
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.9e-07 Score=97.18 Aligned_cols=105 Identities=27% Similarity=0.329 Sum_probs=83.1
Q ss_pred cccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCc
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 225 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 225 (815)
...+..++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++.+| .+..++. +..+++|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhccC-Cccchhh
Confidence 3446788899999999999988866588899999999999999988 56788888999999998 7777655 6778999
Q ss_pred ceeeccCCCcccccccc-cccccccccccc
Q 044882 226 HHLKNSNTKSLEEMPVG-IGRLTSLQTLCN 254 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 254 (815)
+.+++++|. +..+... ...+.+++.+..
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 999999988 5555443 456666666643
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-06 Score=58.32 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=29.9
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP 192 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp 192 (815)
++|++|++++|+|+.+|..+++|++|++|++++|.|+++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4678888888888888777888888888888888877664
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-07 Score=75.95 Aligned_cols=104 Identities=27% Similarity=0.262 Sum_probs=82.1
Q ss_pred ccCCCcccEEEcCCCCccccCccc-cCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcce
Q 044882 149 LFKLQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 227 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 227 (815)
+.+..+|...+|++|.+..+|..| .+++.++.|+|++|+|.++|..+..++.|+.|+++.| .+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 356677888899999999998877 4556899999999999999988999999999999998 78888888888999999
Q ss_pred eeccCCCcccccccc--cccccccccccc
Q 044882 228 LKNSNTKSLEEMPVG--IGRLTSLQTLCN 254 (815)
Q Consensus 228 L~l~~~~~l~~~p~~--i~~L~~L~~L~~ 254 (815)
|+..++. ...+|.. .+.+..|..+++
T Consensus 128 Lds~~na-~~eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 128 LDSPENA-RAEIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hcCCCCc-cccCcHHHhccccHHHHHhcC
Confidence 9888887 6666655 233444444433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-07 Score=90.04 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=143.1
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccc---cccccCc-------ccccCCCCCCceEEec
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE---GIQSSSS-------RSGLHNLRQLQEISIR 605 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~---n~~~~~~-------~~~~~~l~~L~~L~l~ 605 (815)
..+.++++++++++..-+..... +...| ..-++|+..++|+ .+....+ ...+..+|.|++|+||
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~-i~~~L-----~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARA-IAKVL-----ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred cccCceEEEeccCCchhHHHHHH-HHHHH-----hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 57889999999999654433211 11011 1112333333321 1111112 2245567899999999
Q ss_pred cCCCcccccCC----CCCCCCcceEEeccccccccc-------------ccccCCCCCcCcEEecCCCCCCCCCCC----
Q 044882 606 RCGNLVSFPEG----GLPCAKLTRLEISSCKRLEAL-------------PKGLHNLTSLQELTIGRGVELPSLKED---- 664 (815)
Q Consensus 606 ~~~~l~~~~~~----~~~l~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~~~~~~~~---- 664 (815)
+|..-...+.. +..+.+|++|.+.+|.+...- ..-...-+.|+++...+| .+...+..
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~ 179 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAE 179 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHH
Confidence 99754333332 334789999999999753211 112345678999999988 44433321
Q ss_pred --CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCC
Q 044882 665 --GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPN 742 (815)
Q Consensus 665 --~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 742 (815)
...++|+.+.+..|............++..++.|+.|++.+ |..+.-.. ..+..++...++|++|++++|..
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D--Ntft~egs----~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD--NTFTLEGS----VALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc--chhhhHHH----HHHHHHhcccchheeeccccccc
Confidence 24578999999988654433322225688899999999988 44433222 23334556778999999999854
Q ss_pred Ccc----ccc-cCCCCCCCCeeeeCCCCCCcccCC------CCCCCccceeeecCCcc
Q 044882 743 LER----LSS-SIVDLQNLASLYLGDCPKLKYFPE------KGLPSSLLQLDIWGCPL 789 (815)
Q Consensus 743 l~~----l~~-~~~~l~~L~~L~i~~c~~l~~l~~------~~~~~~L~~L~i~~c~~ 789 (815)
-.. +.. .-...|+|+.|++.+| .+++=.. ..--+.|++|++++|.-
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 432 211 2234789999999885 4432111 11137899999988754
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.5e-07 Score=96.80 Aligned_cols=99 Identities=26% Similarity=0.385 Sum_probs=80.8
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
.+..++.+.++.|.+..+-..++.+++|++|++.+|.|..+...+..+++|++|++++| .+..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 56667777788888888656688999999999999999998766899999999999999 7877765 888899999999
Q ss_pred cCCCccccccccccccccccccc
Q 044882 231 SNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 231 ~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
.+|. +..+. ++..+++|+.++
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccCc-chhcc-CCccchhhhccc
Confidence 9998 55543 455566666664
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.8e-07 Score=74.11 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=84.5
Q ss_pred CcccEEEcCCCCccccCcc---ccCCccCCEEecCCCCCCccchhhh-ccCCCcEEeccCCccccccchhhcCcCCccee
Q 044882 153 QRLRAFSLRGYHIFELPDS---IGDLRYLRYLNLSGTEIRTLPESVN-KLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 228 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~---~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 228 (815)
+.+..++|+.|.+..+++. +.+..+|...+|++|.++++|..+. +.+.+.+|++.+| .+..+|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 3466788899988766654 4667888899999999999998885 5568999999999 899999999999999999
Q ss_pred eccCCCccccccccccccccccccc
Q 044882 229 KNSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 229 ~l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
+++.|. +...|.-+..|.++-.|+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhc
Confidence 999998 788888888888887774
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.1e-07 Score=97.31 Aligned_cols=126 Identities=24% Similarity=0.223 Sum_probs=85.5
Q ss_pred CCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCC--CCCCCceE
Q 044882 596 LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDG--LPTNLQSL 673 (815)
Q Consensus 596 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L 673 (815)
+..|.+.+.++|. +..+...+.-++.|+.|++++|++...- .+..++.|++|||+.| .++.+|..+ .+ .|+.|
T Consensus 163 Wn~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hheee
Confidence 3456666777665 5555556666778888888888865543 6778888888888888 666666553 33 38888
Q ss_pred EEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCC
Q 044882 674 TIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFP 741 (815)
Q Consensus 674 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 741 (815)
.+++|...+- .++.+|.+|+.|++++ |.+....+. ..+..+.+|+.|+|.|+|
T Consensus 238 ~lrnN~l~tL------~gie~LksL~~LDlsy--Nll~~hseL-------~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTL------RGIENLKSLYGLDLSY--NLLSEHSEL-------EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhh------hhHHhhhhhhccchhH--hhhhcchhh-------hHHHHHHHHHHHhhcCCc
Confidence 8888864331 4677888888888888 555544331 122456788888888864
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.8e-06 Score=80.67 Aligned_cols=91 Identities=26% Similarity=0.271 Sum_probs=63.9
Q ss_pred ccCCCcccEEEcCCCCcc-----ccCccccCCccCCEEecCCCCCC----ccc-------hhhhccCCCcEEeccCCccc
Q 044882 149 LFKLQRLRAFSLRGYHIF-----ELPDSIGDLRYLRYLNLSGTEIR----TLP-------ESVNKLYNLHSLLLEDCDRL 212 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l 212 (815)
+..+..+..++||||.|. .+-..|.+-++|++.+++.-... ++| ..+-++++|+..+|++|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345777889999999876 23455667788999998853211 333 44567799999999998443
Q ss_pred cccchh----hcCcCCcceeeccCCCcccccc
Q 044882 213 KKLCAD----MGNLAKLHHLKNSNTKSLEEMP 240 (815)
Q Consensus 213 ~~lp~~----i~~L~~L~~L~l~~~~~l~~~p 240 (815)
.+.|.. |++-+.|.||.+++|. ++.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 444443 5677899999999987 55443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.5e-06 Score=94.97 Aligned_cols=244 Identities=24% Similarity=0.375 Sum_probs=114.9
Q ss_pred ccceEEEeccCCcccCchhhhcCCCCCcceEEEecc-CCchhhhccccccccceEecccccccccccccccc-cccCccc
Q 044882 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQC-HSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI-QSSSSRS 591 (815)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~-~~~~~~~ 591 (815)
.|+.+.+.+|..+............++|++|++++| ......+.. .......|++|+.++++... +++..-.
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL------LLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH------hhhhhhhcCCcCccchhhhhccCchhHH
Confidence 444444444444443221112245666666666653 221111100 00022334445555444433 2222222
Q ss_pred ccC-CCCCCceEEeccCCCcc--cccCCCCCCCCcceEEecccccccc--cccccCCCCCcCcEEecCCCCCCCCCCCCC
Q 044882 592 GLH-NLRQLQEISIRRCGNLV--SFPEGGLPCAKLTRLEISSCKRLEA--LPKGLHNLTSLQELTIGRGVELPSLKEDGL 666 (815)
Q Consensus 592 ~~~-~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 666 (815)
.+. .+++|++|.+.+|..++ .+-.....+++|++|++++|...+. +.....++++|+.|.+..+..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------
Confidence 222 26677777777676422 1222233466777777777765421 222233455555544433321
Q ss_pred CCCCceEEEcCCcchh-hhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccc-eEEecCCCCC-
Q 044882 667 PTNLQSLTIEGNMEIW-KSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLT-SLWISGFPNL- 743 (815)
Q Consensus 667 ~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~c~~l- 743 (815)
+..++.+.+.++.... ..... ..+..++.++.+.+..| . . .... .+.+.+|+.+
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~--~~~~~~~~l~~~~l~~~-~-~-------------------~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAE--LILRSCPKLTDLSLSYC-G-I-------------------SDLGLELSLRGCPNLT 390 (482)
T ss_pred CccHHHHHHHHhhccCchhHhH--HHHhcCCCcchhhhhhh-h-c-------------------cCcchHHHhcCCcccc
Confidence 2333344433332221 01111 23455666666666662 1 1 1111 4666777777
Q ss_pred ccccccCCCCCCCCeeeeCCCCCCcccCCC--CC-CCccceeeecCCcchHHHHh
Q 044882 744 ERLSSSIVDLQNLASLYLGDCPKLKYFPEK--GL-PSSLLQLDIWGCPLIEEKCR 795 (815)
Q Consensus 744 ~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~-~~~L~~L~i~~c~~l~~~~~ 795 (815)
..+......+..++.|+++.|...+.-.-. .. ..+++.+++.+|+.+.....
T Consensus 391 ~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 391 ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 444433344444888888888765543221 11 45678888888887766544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=7.3e-06 Score=87.26 Aligned_cols=83 Identities=27% Similarity=0.285 Sum_probs=59.8
Q ss_pred cccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCccccccchhhcCcCCcc
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLH 226 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 226 (815)
++.-++.|+.|+|++|+++... .+..+.+|++|||++|.+..+|. +.... +|+.|++++| .++++-. |.+|++|+
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g-ie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG-IENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh-HHhhhhhh
Confidence 3455677888888888877663 67778888888888888877773 22233 3888888887 6666643 77888888
Q ss_pred eeeccCCC
Q 044882 227 HLKNSNTK 234 (815)
Q Consensus 227 ~L~l~~~~ 234 (815)
.||+++|-
T Consensus 258 ~LDlsyNl 265 (1096)
T KOG1859|consen 258 GLDLSYNL 265 (1096)
T ss_pred ccchhHhh
Confidence 88888875
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=9e-05 Score=83.27 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=54.6
Q ss_pred cCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc--hhhhcc
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP--ESVNKL 198 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L 198 (815)
.+|.||+|.+.+-. .....+..-..++++|+.||+|+++++.+ .++++|++|++|.+.+-.+..-. ..+.+|
T Consensus 146 ~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCce-----ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 45666666554422 01112222235566666666666666655 55666666666666655554322 445566
Q ss_pred CCCcEEeccCCccccc--cc----hhhcCcCCcceeeccCCC
Q 044882 199 YNLHSLLLEDCDRLKK--LC----ADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 199 ~~L~~L~L~~~~~l~~--lp----~~i~~L~~L~~L~l~~~~ 234 (815)
++|++||++....... +. +.-..|++||.||.+++.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 6666666665422111 01 011235666666666554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=69.60 Aligned_cols=189 Identities=14% Similarity=0.142 Sum_probs=112.9
Q ss_pred cccccccccccccccccC--cccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc-ccccccCCCCCc
Q 044882 571 KCDNIRTLTVEEGIQSSS--SRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE-ALPKGLHNLTSL 647 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L 647 (815)
.|..++.+++..|.++.. +...+.++|.|+.|+|+.|+....+...-.++.+|++|-+.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 355666666666666542 23346779999999999887554443322567899999998866432 223346688888
Q ss_pred CcEEecCCCCCCCCCC-----CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcccccc
Q 044882 648 QELTIGRGVELPSLKE-----DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRL 722 (815)
Q Consensus 648 ~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 722 (815)
+.|+++.|. .+.+-. ...-+.++.|+.-.|......-.- ..-..+|++..+-+.. .-+.......
T Consensus 149 telHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e--~PlK~~s~ek----- 218 (418)
T KOG2982|consen 149 TELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCE--GPLKTESSEK----- 218 (418)
T ss_pred hhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeec--Ccccchhhcc-----
Confidence 999998883 221111 123346777777777543321111 2223467777777776 2333333211
Q ss_pred ccCCCCCCccceEEecCCCCCccccc--cCCCCCCCCeeeeCCCCCCcccCC
Q 044882 723 GTALPLPASLTSLWISGFPNLERLSS--SIVDLQNLASLYLGDCPKLKYFPE 772 (815)
Q Consensus 723 ~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~~c~~l~~l~~ 772 (815)
.+..++.+-.|+|+. +++.+... .+..|++|..|.+++.|-...+..
T Consensus 219 --~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 219 --GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred --cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 112345666777777 56655433 677788888888888776665543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=9.6e-05 Score=70.44 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=48.4
Q ss_pred cCCCcccEEEcCCCCccc---cCccccCCccCCEEecCCCCCCccchhh-hccCCCcEEeccCCcc-ccccchhhcCcCC
Q 044882 150 FKLQRLRAFSLRGYHIFE---LPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDR-LKKLCADMGNLAK 224 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~---lp~~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L~~ 224 (815)
...++++.|||.+|.|+. +-.-+.+|++|++|+|++|.+..--.+. ..+.+|++|-|.++.- .......+..+++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456667777777777663 2223466777777777777654211222 3455677777766521 1233344556666
Q ss_pred cceeeccCCC
Q 044882 225 LHHLKNSNTK 234 (815)
Q Consensus 225 L~~L~l~~~~ 234 (815)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6777666663
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=6.4e-05 Score=84.44 Aligned_cols=107 Identities=25% Similarity=0.316 Sum_probs=80.8
Q ss_pred cCCCceEEccccCCcCcCCCccccccccc-cCCCcccEEEcCCCCcc--ccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKL-FKLQRLRAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.-.+|+.|.+.+... ++...+..+ ..+|.||.|.+++-.+. ++-.-..++++|+.||+|+++|+.+ ..+++
T Consensus 120 sr~nL~~LdI~G~~~-----~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~ 193 (699)
T KOG3665|consen 120 SRQNLQHLDISGSEL-----FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR 193 (699)
T ss_pred HHHhhhhcCccccch-----hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence 345788887766432 334555566 67899999999987654 3334457889999999999999998 88999
Q ss_pred cCCCcEEeccCCccccccc--hhhcCcCCcceeeccCCC
Q 044882 198 LYNLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 234 (815)
|++||+|.+++= .+..-+ ..+.+|++|++||+|..+
T Consensus 194 LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 194 LKNLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cccHHHHhccCC-CCCchhhHHHHhcccCCCeeeccccc
Confidence 999999999864 333222 347789999999999876
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0011 Score=59.87 Aligned_cols=98 Identities=23% Similarity=0.270 Sum_probs=48.6
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhh-ccCCCcEEeccCCccccccch--hhcCcCCcceeecc
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVN-KLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNS 231 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~ 231 (815)
...+||++|.+..++ .|..+..|.+|.+.+|.|+.+-..++ .+++|+.|.|.+| .+.++-+ .+..+++|+.|.+-
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 345555555555442 24455556666666665555543343 3345666666555 4443321 14455566666655
Q ss_pred CCCcccccc----cccccccccccccce
Q 044882 232 NTKSLEEMP----VGIGRLTSLQTLCNF 255 (815)
Q Consensus 232 ~~~~l~~~p----~~i~~L~~L~~L~~~ 255 (815)
+|. ...-+ .-+.++++|++|+..
T Consensus 122 ~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCc-hhcccCceeEEEEecCcceEeehh
Confidence 554 22221 114556666666543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0011 Score=59.95 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=69.7
Q ss_pred ccccccccCCCcccEEEcCCCCccccCcccc-CCccCCEEecCCCCCCccc--hhhhccCCCcEEeccCCccccccch--
Q 044882 143 YSILPKLFKLQRLRAFSLRGYHIFELPDSIG-DLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA-- 217 (815)
Q Consensus 143 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~-- 217 (815)
....+.|..++.|.+|.|.+|+|+.+...+. -+++|..|.|.+|.|..+- ..+..+++|++|.+-+| .+..-+.
T Consensus 54 l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR 132 (233)
T KOG1644|consen 54 LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYR 132 (233)
T ss_pred hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCce
Confidence 3455677889999999999999998865564 4567999999999988663 45677889999999888 4433322
Q ss_pred --hhcCcCCcceeeccCCC
Q 044882 218 --DMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 218 --~i~~L~~L~~L~l~~~~ 234 (815)
.+.++++|+.||...-.
T Consensus 133 ~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eEEEEecCcceEeehhhhh
Confidence 26889999999987654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=8.1e-05 Score=82.91 Aligned_cols=164 Identities=23% Similarity=0.370 Sum_probs=74.0
Q ss_pred CCCcceEEeccccccc-cccccc-CCCCCcCcEEecCCCCCCCCC--C-CCCCCCCceEEEcCCcchhhhhhhcCcCccc
Q 044882 620 CAKLTRLEISSCKRLE-ALPKGL-HNLTSLQELTIGRGVELPSLK--E-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHR 694 (815)
Q Consensus 620 l~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 694 (815)
+++|+.|++++|...+ ..-..+ ..+++|+.|.+.+|..+++.. . ...+++|++|++++|..+...... .....
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~--~~~~~ 319 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE--ALLKN 319 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH--HHHHh
Confidence 3455555555554211 111111 125556666655554432211 0 023455666666666554322111 12334
Q ss_pred CCCccEEEEeccC--CCcccCCCCccccccccCCCCC-CccceEEecCCCCCccccccCCCCCCCC-eeeeCCCCCC-cc
Q 044882 695 FSSLRQLTIINCD--DDMVSFPPKADDKRLGTALPLP-ASLTSLWISGFPNLERLSSSIVDLQNLA-SLYLGDCPKL-KY 769 (815)
Q Consensus 695 l~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~-~L~i~~c~~l-~~ 769 (815)
+++|+.|.+..+. ..++.+.- . ...... ..+..+.+.+|++++.+--......... .+.+.+|+.+ ..
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l----~---~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~ 392 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSL----S---GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTES 392 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHH----H---HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchH
Confidence 5555555544421 12222211 0 000111 2555666666666655533211123333 5677788877 33
Q ss_pred cCC-CCCCCccceeeecCCcchHH
Q 044882 770 FPE-KGLPSSLLQLDIWGCPLIEE 792 (815)
Q Consensus 770 l~~-~~~~~~L~~L~i~~c~~l~~ 792 (815)
+.. .....+++.|+++.|...+.
T Consensus 393 l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 393 LELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred HHHHhccCCccceEecccCccccc
Confidence 332 11223389999999986654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=9.8e-05 Score=69.69 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=55.6
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccch--hhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l 230 (815)
.+.+.|++-|+.+..+ ..+.+++.|++|.|+-|+|+.+ ..+..+++|+.|.|+.| .+..+.. -+.+|++|+.|.+
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 3445555555555544 2234556666666666666655 34556666666666665 4443332 1355666666666
Q ss_pred cCCCcccccccc-----cccccccccccceee
Q 044882 231 SNTKSLEEMPVG-----IGRLTSLQTLCNFVV 257 (815)
Q Consensus 231 ~~~~~l~~~p~~-----i~~L~~L~~L~~~~~ 257 (815)
..|...+.-+.. +.-|++|++|++..+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 665544433322 556777777765444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.00097 Score=63.11 Aligned_cols=103 Identities=24% Similarity=0.218 Sum_probs=55.0
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCC--CCC-ccchhhhccCCCcEEeccCCccccc---cchhhcCcCC
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGT--EIR-TLPESVNKLYNLHSLLLEDCDRLKK---LCADMGNLAK 224 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~L~~ 224 (815)
.+..|..|++.+..++.+ ..+-.|++|++|.++.| .+. .++...-++++|++|++++| .++. ++. +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhhcc
Confidence 344455555555554443 23445667777777766 433 44444445577777777776 4432 222 455666
Q ss_pred cceeeccCCCccccccc----ccccccccccccceee
Q 044882 225 LHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVV 257 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~ 257 (815)
|..|++.+|.... +-. .+.-+++|..|+...+
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 6677777665222 211 1445666666654444
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.63 E-value=4.4e-05 Score=71.70 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCCCCCCcceEEeccccccccccc----ccCCCCCcCcEEecCCCCCCCCCCC---------------CCCCCCceEEEc
Q 044882 616 GGLPCAKLTRLEISSCKRLEALPK----GLHNLTSLQELTIGRGVELPSLKED---------------GLPTNLQSLTIE 676 (815)
Q Consensus 616 ~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~~L~~L~l~ 676 (815)
++..||.|+..+++.|.+....|+ .+.+-+.|++|.+++| .+..+... ..-|.|+.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 344567777777777766554443 2456677777777777 44433221 123456666666
Q ss_pred CCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 677 GNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 677 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
.|..-..+-......++.-..|+++.+..
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~q 194 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQ 194 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeee
Confidence 55432211111001233335566666665
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0012 Score=36.76 Aligned_cols=6 Identities=67% Similarity=1.082 Sum_probs=2.1
Q ss_pred EecCCC
Q 044882 181 LNLSGT 186 (815)
Q Consensus 181 L~L~~~ 186 (815)
|||++|
T Consensus 5 Ldls~n 10 (22)
T PF00560_consen 5 LDLSGN 10 (22)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.00031 Score=66.48 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc--hhhhccC
Q 044882 122 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP--ESVNKLY 199 (815)
Q Consensus 122 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~ 199 (815)
+.+++.|.+++.. .....-..+|+.|+||.|+-|.|+.+ ..+..+++|+.|.|..|.|..+- ..+.+|+
T Consensus 18 l~~vkKLNcwg~~--------L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--------LDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCC--------ccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 4455556555543 11222337899999999999999988 55889999999999999998774 5678999
Q ss_pred CCcEEeccCCccccccch-----hhcCcCCcceee
Q 044882 200 NLHSLLLEDCDRLKKLCA-----DMGNLAKLHHLK 229 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp~-----~i~~L~~L~~L~ 229 (815)
+|++|-|..|....+-+. .+.-|++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999988754443332 256788888887
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0025 Score=35.48 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.7
Q ss_pred cccEEEcCCCCccccCccccCC
Q 044882 154 RLRAFSLRGYHIFELPDSIGDL 175 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~~~~~l 175 (815)
+|++||+++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887754
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0037 Score=59.30 Aligned_cols=93 Identities=29% Similarity=0.342 Sum_probs=64.5
Q ss_pred ccccCCCcccEEEcCCC--Ccc-ccCccccCCccCCEEecCCCCCCccc--hhhhccCCCcEEeccCCccccccc----h
Q 044882 147 PKLFKLQRLRAFSLRGY--HIF-ELPDSIGDLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCDRLKKLC----A 217 (815)
Q Consensus 147 ~~~~~l~~Lr~L~L~~~--~i~-~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp----~ 217 (815)
..|..+++|+.|.++.| ++. .++-...++++|++|++++|+|+.+- ..+.++.+|..||+.+|.... +- .
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~ 137 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREK 137 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHH
Confidence 34567888999999999 444 44444456699999999999887531 446778889999999984332 32 2
Q ss_pred hhcCcCCcceeeccCCCccccccc
Q 044882 218 DMGNLAKLHHLKNSNTKSLEEMPV 241 (815)
Q Consensus 218 ~i~~L~~L~~L~l~~~~~l~~~p~ 241 (815)
.+.-+++|.+|+-.... -...|.
T Consensus 138 vf~ll~~L~~LD~~dv~-~~Ea~~ 160 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVD-GEEAPE 160 (260)
T ss_pred HHHHhhhhccccccccC-Cccccc
Confidence 25677899999876655 334443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.00067 Score=62.45 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=71.1
Q ss_pred ccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCccee
Q 044882 149 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 228 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 228 (815)
+..++..++||++.|++..+-..|+.+..|..|+++.|+|..+|..++.+..++.+++..| .....|.+++++++++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4566778888888888887777788888888888888888888888888888888888877 788888888888888888
Q ss_pred eccCCC
Q 044882 229 KNSNTK 234 (815)
Q Consensus 229 ~l~~~~ 234 (815)
+..++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 888776
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.019 Score=29.50 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=3.9
Q ss_pred CCEEecCCCCCCc
Q 044882 178 LRYLNLSGTEIRT 190 (815)
Q Consensus 178 L~~L~L~~~~i~~ 190 (815)
|++|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3334444443333
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.027 Score=28.91 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=11.4
Q ss_pred CcccEEEcCCCCccccC
Q 044882 153 QRLRAFSLRGYHIFELP 169 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp 169 (815)
++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46899999999998876
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.092 Score=45.89 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=22.7
Q ss_pred cccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 591 SGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 591 ~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
..|.++++|+.+.+.++ ...++. .+..+++|+.+.+.+ .....-...+..+++|+.+.+..
T Consensus 29 ~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred hhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 34445555555555442 222222 344444555555543 11111222344455555555543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.0089 Score=54.34 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=55.8
Q ss_pred CCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 669 NLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 669 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
.++.++-+++......+ ..+.++++++.|.+.+| ..+.. .++...-+..++|+.|+|++|+.+++---
T Consensus 102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~c-k~~dD-------~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANC-KYFDD-------WCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eEEEEecCCchHHHHHH----HHHhccchhhhheeccc-cchhh-------HHHHHhcccccchheeeccCCCeechhHH
Confidence 35555666655444333 34666777777777773 33332 22222223567899999999988877432
Q ss_pred -cCCCCCCCCeeeeCCCCCCcc
Q 044882 749 -SIVDLQNLASLYLGDCPKLKY 769 (815)
Q Consensus 749 -~~~~l~~L~~L~i~~c~~l~~ 769 (815)
.+..+++|+.|.|.+.+.+..
T Consensus 170 ~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHHHhhhhHHHHhcCchhhhc
Confidence 677888888888887655443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.28 Score=42.81 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=4.5
Q ss_pred cCCCCCCceEEec
Q 044882 593 LHNLRQLQEISIR 605 (815)
Q Consensus 593 ~~~l~~L~~L~l~ 605 (815)
|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3444444444444
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.0054 Score=56.73 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=76.3
Q ss_pred ccccC-ccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCccccccccc
Q 044882 165 IFELP-DSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGI 243 (815)
Q Consensus 165 i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 243 (815)
+.++| ..+.....-++||++.|.+..+-..++.++.|..||++.| .+.-+|..++.+..++++++..|. ....|...
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 33455 4566778899999999999888888999999999999998 899999999999999999998887 88999999
Q ss_pred cccccccccc
Q 044882 244 GRLTSLQTLC 253 (815)
Q Consensus 244 ~~L~~L~~L~ 253 (815)
+++++++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999999885
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.14 Score=29.83 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=12.5
Q ss_pred CccCCEEecCCCCCCccchh
Q 044882 175 LRYLRYLNLSGTEIRTLPES 194 (815)
Q Consensus 175 l~~L~~L~L~~~~i~~lp~~ 194 (815)
|.+|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666644
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.14 Score=29.83 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=12.5
Q ss_pred CccCCEEecCCCCCCccchh
Q 044882 175 LRYLRYLNLSGTEIRTLPES 194 (815)
Q Consensus 175 l~~L~~L~L~~~~i~~lp~~ 194 (815)
|.+|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666644
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.025 Score=51.49 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=49.4
Q ss_pred CCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC---CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCC
Q 044882 621 AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE---DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSS 697 (815)
Q Consensus 621 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 697 (815)
..++.++-+++.+...--+.+.++++++.|.+.+|..+.+..- .+..++|+.|++++|+.++.... ..+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH---HHHHHhhh
Confidence 3566777777766555555567777777788877765543210 12556777777777776653322 13455566
Q ss_pred ccEEEEec
Q 044882 698 LRQLTIIN 705 (815)
Q Consensus 698 L~~L~l~~ 705 (815)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66666555
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.36 Score=28.04 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.9
Q ss_pred CCcccEEEcCCCCccccCccc
Q 044882 152 LQRLRAFSLRGYHIFELPDSI 172 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~ 172 (815)
+++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998653
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.36 Score=28.04 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.9
Q ss_pred CCcccEEEcCCCCccccCccc
Q 044882 152 LQRLRAFSLRGYHIFELPDSI 172 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~ 172 (815)
+++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998653
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=85.60 E-value=0.56 Score=27.27 Aligned_cols=15 Identities=40% Similarity=0.764 Sum_probs=6.9
Q ss_pred ccceeeecCCcchHH
Q 044882 778 SLLQLDIWGCPLIEE 792 (815)
Q Consensus 778 ~L~~L~i~~c~~l~~ 792 (815)
+|+.|++++|+.+++
T Consensus 3 ~L~~L~l~~C~~itD 17 (26)
T smart00367 3 NLRELDLSGCTNITD 17 (26)
T ss_pred CCCEeCCCCCCCcCH
Confidence 344444444444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 815 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 2e-07 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 1e-21
Identities = 26/203 (12%), Positives = 65/203 (32%), Gaps = 36/203 (17%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNS- 59
S+ KD + + + +LW + +E +S + N
Sbjct: 384 TDLSILQKDVKVPTKVLCILWDM------------ETEEVEDILQEFVNKSLLFCDRNGK 431
Query: 60 ISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDL 119
R+ +HDL D + +++ ++ ++ R+ + + + +
Sbjct: 432 SFRYYLHDLQVDFLT---EKNCSQLQD----LHKKIITQFQRYHQP---HTLSPDQEDCM 481
Query: 120 YDIQHLRTFLPVTLSNSSRGHLAYSILP---------KLFKLQRLRAFSLRGYHIFELPD 170
Y FL ++++ +++ +L L + HI + D
Sbjct: 482 Y----WYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKD 537
Query: 171 SIGDLRYLRYLNLSGTEIRTLPE 193
+ +L+L+G + P
Sbjct: 538 CAVSENFQEFLSLNGHLLGRQPF 560
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 5e-19
Identities = 30/109 (27%), Positives = 48/109 (44%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 203
+ L L++ L I LP SI +L+ L+ L + + + L +++ L L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233
Query: 204 LLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
L L C L+ G A L L + +L +P+ I RLT L+ L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 52/259 (20%), Positives = 82/259 (31%), Gaps = 57/259 (22%)
Query: 146 LPK-LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSL 204
P F+L L+ ++ + ELPD++ L L L+ +R LP S+ L L L
Sbjct: 96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 205 LLEDCDRLKKLCADMGN---------LAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNF 255
+ C L +L + + L L L+ T + +P I L +L++L
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL--- 211
Query: 256 VVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTD 315
K S L L I L L EL LR
Sbjct: 212 ---KIRNSPLSAL--------GPAIHHL-----------------PKLEELDLR------ 237
Query: 316 GSSSREAEIEKDVLNMLKPHENLEQFCISGYGG-TKFPTWFGDSSFSNLVTLEFENCDMC 374
+ L++ + P + L L+ C
Sbjct: 238 -GCTALRNYPPIFGGR----APLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCVNL 290
Query: 375 TALP-SVGQLPSLKHLAVC 392
+ LP + QLP+ + V
Sbjct: 291 SRLPSLIAQLPANCIILVP 309
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 64/332 (19%), Positives = 100/332 (30%), Gaps = 62/332 (18%)
Query: 460 FPEHLPALEMLVIEGC---EELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLK 516
H E L +G ++ NS
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA--------WRQANSNNP 58
Query: 517 KIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIR 576
+IE R ALK+ + T + +R L Q P L +++
Sbjct: 59 QIETRTGRALKATADLLEDATQPGRVALELRSV-PLP-----QFPDQAFRL-----SHLQ 107
Query: 577 TLTVEEGIQSSSSR-----SGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSC 631
+T+ ++ + L+ +++ R L + P +L L I +C
Sbjct: 108 HMTI------DAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRAC 160
Query: 632 KRLEALPKGL---------HNLTSLQELTIGRG--VELPSLKEDGLPTNLQSLTIEGNME 680
L LP+ L L +LQ L + LP+ NL+SL I +
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNS-- 216
Query: 681 IWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740
+ G H L +L + C + ++PP G A L L +
Sbjct: 217 ---PLSALGPAIHHLPKLEELDLRGCTA-LRNYPPI-----FGGR----APLKRLILKDC 263
Query: 741 PNLERLSSSIVDLQNLASLYLGDCPKLKYFPE 772
NL L I L L L L C L P
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 57/463 (12%), Positives = 116/463 (25%), Gaps = 143/463 (30%)
Query: 190 TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSL 249
+ + +L + L+ + + ++ + S +
Sbjct: 3 SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNP 58
Query: 250 QTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309
Q + L L + L L
Sbjct: 59 QIETR------------TGRALKATADLLEDATQP-----------------GRVALEL- 88
Query: 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFE 369
S + + +L+ I G + P F+ L TL
Sbjct: 89 -------RSVPLPQFPDQAFRL----SHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLA 135
Query: 370 NCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWE 428
+ ALP S+ L L+ L++ + L D+ L
Sbjct: 136 RNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV----------- 183
Query: 429 DWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVTSL 485
L+ L L + ++ + P +L L+ L I +++L
Sbjct: 184 ---------------NLQSLR-LEWTGIR-SLPASIANLQNLKSLKIRNS-----PLSAL 221
Query: 486 PA-LCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDM 544
+ L+++++R C AL++ P
Sbjct: 222 GPAIHHLPK---------------------LEELDLRGCTALRNYPP------------- 247
Query: 545 SIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISI 604
L L++ C N+ TL ++ +H L QL+++ +
Sbjct: 248 IFGGRAPLKR------------LILKDCSNLLTLPLD-----------IHRLTQLEKLDL 284
Query: 605 RRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSL 647
R C NL P + + + + +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 58/343 (16%), Positives = 110/343 (32%), Gaps = 64/343 (18%)
Query: 167 ELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLA--K 224
D + + + + + N + LK + +
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQANSNNP----QIETRTGRALKATADLLEDATQPG 82
Query: 225 LHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLREL----KLLTHLHGTLNI 280
L+ + L + P RL+ LQ + +GL EL + L TL +
Sbjct: 83 RVALELRSVP-LPQFPDQAFRLSHLQHMTI------DAAGLMELPDTMQQFAGLE-TLTL 134
Query: 281 S--KLENV-KDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHE- 336
+ L + + L LREL +R + E+ + + + E
Sbjct: 135 ARNPLRALPASIA-----SL---NRLRELSIR-------ACPELTELPEPLASTDASGEH 179
Query: 337 ----NLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVC 392
NL+ + G P + NL +L+ N + P++ LP L+ L +
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
Query: 393 GMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILR 452
G + ++ F G L+ L +D +PL + +L +L +
Sbjct: 238 GCTALRNYPPIF-GG-----RAPLKRLILKDCSNLLT-LPLDIHR----LTQLEKLDLRG 286
Query: 453 CSKLKGTFPE---HLPALEMLVIEGC------EELLVSVTSLP 486
C L P LPA ++++ + V+ + P
Sbjct: 287 CVNLS-RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAEP 328
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 54/239 (22%)
Query: 587 SSSRSGLHNLRQLQEISIRRCGNLVSFPEG-------------------GLPCAKLTRLE 627
SS H+ + + + L + + + ++E
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61
Query: 628 ISSCKRLEALPKGLHNLTS--LQELTIGRGVELPSL-KEDGLPTNLQSLTIEGN--MEIW 682
+ + L+A L + T L + R V LP + ++LQ +TI+ ME+
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALEL-RSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP 120
Query: 683 KSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPN 742
+ +F+ L LT+ + + P + + L L I P
Sbjct: 121 DT-------MQQFAGLETLTLARN--PLRALPAS-----IASL----NRLRELSIRACPE 162
Query: 743 LERLSSSI---------VDLQNLASLYLGDCPKLKYFPEK-GLPSSLLQLDIWGCPLIE 791
L L + L NL SL L ++ P +L L I PL
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA 220
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 8e-14
Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 24/170 (14%)
Query: 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSS-NS 59
A+ + P + + + + E +D + L R +
Sbjct: 394 AFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQ---LDDEVADRLKRLSKRGALLSGKRMP 450
Query: 60 ISRFLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLS-YIPEYCDGVKRFED 118
+ F + +I+ + V Q+ + + L + E + +
Sbjct: 451 VLTFKIDHIIHMFLK--------------HVVDAQTIANGISILEQRLLEIGNNNVSVPE 496
Query: 119 LYDIQHLRTFLPVTLSNSSRGHLAYSIL-----PKLFKLQRLRAFSLRGY 163
+ H + F + S +++ PK +L + SL+ +
Sbjct: 497 RHIPSHFQKFRRSSASEMYPKTTEETVIRPEDFPKFMQLHQKFYDSLKNF 546
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 9e-12
Identities = 102/596 (17%), Positives = 184/596 (30%), Gaps = 112/596 (18%)
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL--PDSIG 173
+ L + L LS + + S P L +LQ L L + ++
Sbjct: 20 PQVLNTTERLL------LSFNYIRTVTASSFPFLEQLQLL---ELGSQYTPLTIDKEAFR 70
Query: 174 DLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK--- 229
+L LR L+L ++I L L++L L L C L G L L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLD 129
Query: 230 --NSNTKSLEEMPVGIGRLTSLQTL----CNF-VVGKGSGSGLRELKLLTHLHGTLNISK 282
+ +SL P G+L SL+++ +V + L+ L L +
Sbjct: 130 LSKNQIRSLYLHPS-FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS---LAANS 185
Query: 283 LENVKDVGDAKEAQLDGKKNLRELLLRWT-LSTDGSSSREAEIEKDVLNMLKPHENLEQF 341
L + V K L L + + D + + I K L ++
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 342 CISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRL- 400
+ ++F+ L + D+ S G + SL + +K L
Sbjct: 246 GFGFHNIKDPD----QNTFAGLARSSVRHLDL-----SHGFVFSLNSRVFETLKDLKVLN 296
Query: 401 ----------GSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHI 450
FYG D+ L+ L + G PK+ + +
Sbjct: 297 LAYNKINKIADEAFYGLDN------LQVLNLSYNL-----LGELYSSNFYGLPKVAYIDL 345
Query: 451 LRC--SKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHP 508
+ + ++ + L L+ L + L ++ +P++ G K
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNA--LTTIHFIPSIPDIFLSGNK----------- 392
Query: 509 GSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLL 568
L +LP+ + L + + L L + +L
Sbjct: 393 -----------------LVTLPKINLTANLIHLSENRLENLDIL------YFLLRVPHLQ 429
Query: 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIR----RCGNLVSFPEGGLPC-AKL 623
I + S S L+++ + + + L
Sbjct: 430 ILILNQ-------NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482
Query: 624 TRLEISSCKRLEALPKG-LHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGN 678
L ++ L +LP G +LT+L+ L++ L L + LP NL+ L I N
Sbjct: 483 QVLYLNHN-YLNSLPPGVFSHLTALRGLSL-NSNRLTVLSHNDLPANLEILDISRN 536
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 12/145 (8%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 203
SI + +I + ++ L LR + + +
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEA----WEN 229
Query: 204 LLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL----CNFVVG- 258
E + K NL L ++ N +L ++P + L +Q + + G
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 259 --KGSGSGLRELKLLTHLHGTLNIS 281
K L + + + + I
Sbjct: 290 QLKDDWQALADAPVGEKIQ-IIYIG 313
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 84/646 (13%), Positives = 178/646 (27%), Gaps = 141/646 (21%)
Query: 151 KLQRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLS-----GTEIRTLPESVNKLYNLHSL 204
R+ SL G+ +PD+IG L L L L E P+ ++ +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 205 LLEDCDRLKKLCADMGNLA--KLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSG 262
K L ++ + + +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG------QLS 192
Query: 263 SGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREA 322
+ + + + + +L LR+ + + + +
Sbjct: 193 NNITFV--------SKAVMRL-----------------TKLRQFYMGNSPFV--AENICE 225
Query: 323 EIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVG 381
E + + ++ + + +L +E NC T LP +
Sbjct: 226 AWENENSEYAQQYKTE-------------DLKWD--NLKDLTDVEVYNCPNLTKLPTFLK 270
Query: 382 QLPSLKHLAVCG--MSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGV 439
LP ++ + V ++L ++ ++ + L++
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-------LKTFPVE 323
Query: 440 EGFPKLRELHILRCS--KLKGTFPE--HLPALEMLVIEGCEELLVSVTSLPALCKFISGG 495
K+++L +L C +L+G P L L + +T +PA G
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-----QITEIPA---NFCGF 375
Query: 496 CKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLE--DMSIRQCHSLT 553
++ ++ + LK +P + + S + D S + S+
Sbjct: 376 TEQ----------------VENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418
Query: 554 YIAAVQLPLSLKNLLIHKCDNIRTLTVE----EGIQSSSSRSGLHNLRQLQEISIRRCGN 609
L + + N+ ++ + L I++
Sbjct: 419 GKNFDPLDPTPFKGI-----NVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGN-M 468
Query: 610 LVSFPEGGLP--------CAKLTRLEISSCKRLEALPKGLH--NLTSLQELTIG--RGVE 657
L P+ L LT +++ K L L L L + + +
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK 527
Query: 658 LPSLKEDGLPTNLQSLTIEGNMEIWKSMIERG--RGFHRFSSLRQLTIINCDDDMVSFPP 715
P+ + + L+ I + + R G SL QL I + D +
Sbjct: 528 FPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND--IRKVNE 583
Query: 716 KADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYL 761
K + +++ L I PN+ S + L
Sbjct: 584 K-----------ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 66/550 (12%), Positives = 149/550 (27%), Gaps = 105/550 (19%)
Query: 171 SIGDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLL----EDCDRLKKLCADMGNLAKL 225
S+ + L+L G +P+++ +L L L L E + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 226 HHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNIS--KL 283
+ + R + + + +++ +T + +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 284 ENV-KDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFC 342
V K V +L LR+ + + + + E + + ++
Sbjct: 196 TFVSKAVM-----RL---TKLRQFYMGNSPFV--AENICEAWENENSEYAQQYKTE---- 241
Query: 343 ISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCG--MSRVKR 399
+ + +L +E NC T LP + LP ++ + V ++
Sbjct: 242 ---------DLKWD--NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290
Query: 400 LGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCS--KLK 457
L ++ ++ + L++ K+++L +L C +L+
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNN-------LKTFPVETSLQKMKKLGMLECLYNQLE 343
Query: 458 GTFPE--HLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVL 515
G P L L + +T +PA G ++ +
Sbjct: 344 GKLPAFGSEIKLASLNLAYN-----QITEIPA---NFCGFTEQ----------------V 379
Query: 516 KKIEIRECDALKSLPEAWMCGTNSSLE--DMSIRQCHSLTYIAAVQLPLSLKNL------ 567
+ + LK +P + + S + D S + S+ L +
Sbjct: 380 ENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 568 -------------LIHKCDNIRTL-------TVEEGIQSSSSRSGLHNLRQLQEISIRRC 607
L + ++ T N L I +R
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498
Query: 608 GNLVSFPE--GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDG 665
L + L +++S P N ++L+ I + +
Sbjct: 499 -KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556
Query: 666 -LPTNLQSLT 674
P +
Sbjct: 557 EWPEGITLCP 566
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 14/122 (11%)
Query: 144 SILPKLFKLQRLRAF-----SLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPES--VN 196
+ L + + + + ++ + L ++L ++ L +
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510
Query: 197 KLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSL------EEMPVGIGRLTSLQ 250
L L + L K N + L N + E P GI SL
Sbjct: 511 TLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569
Query: 251 TL 252
L
Sbjct: 570 QL 571
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 30/204 (14%)
Query: 591 SGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQEL 650
+ + + + LT +E+ +C L LP L L +Q +
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278
Query: 651 TIGR---------GVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQL 701
+ + +L + + +Q + I N ++ +++L
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN------NLKTFPVETSLQKMKKL 332
Query: 702 TIINCDD-DMVSFPPKADDKRLGTALPLPASLTSLWISGFPN-LERLSSSIV-DLQNLAS 758
++ C + P G+ L SL ++ N + + ++ + + +
Sbjct: 333 GMLECLYNQLEGKLPA-----FGSE----IKLASLNLAY--NQITEIPANFCGFTEQVEN 381
Query: 759 LYLGDCPKLKYFPEKGLPSSLLQL 782
L KLKY P S+ +
Sbjct: 382 LSFAHN-KLKYIPNIFDAKSVSVM 404
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 14/114 (12%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFEL--PDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNL 201
L ++++ + ++ S+ ++ L L ++ + L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355
Query: 202 HSLLLEDCDRLKKLCADM-GNLAKLHHLKNSNTKSLEEMP--VGIGRLTSLQTL 252
SL L ++ ++ A+ G ++ +L ++ K L+ +P ++ + +
Sbjct: 356 ASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAI 407
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 71/601 (11%), Positives = 156/601 (25%), Gaps = 149/601 (24%)
Query: 219 MGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL---CNFVVGKGSGSGLRELKLLTHLH 275
+ + ++ L + +P IG+LT L+ L + G + +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 276 GTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPH 335
++ K D +++ +L+ S S I+K L
Sbjct: 137 -QKQKMRMHYQK-----TFVDYDPREDFSDLIKDCINSDPQQKS----IKKSSRITL--- 183
Query: 336 ENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMS 395
Q T +V +L L+ +
Sbjct: 184 -KDTQIGQLSNNITFVS-------------------------KAVMRLTKLRQFYM---- 213
Query: 396 RVKRLGSEFYGND--SPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRC 453
+ + E E Q+++ L+ L ++ + C
Sbjct: 214 ---------GNSPFVAENICEAWENENSEYAQQYK-TEDLKWDN----LKDLTDVEVYNC 259
Query: 454 SKLKGTFPE---HLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGS 510
L P LP ++++ + +S L + ++
Sbjct: 260 PNL-TKLPTFLKALPEMQLINVACNR--GISGEQLKDDWQALA--------------DAP 302
Query: 511 QNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSL-KNLL- 568
++ I I + LK+ P + S+++ L L N L
Sbjct: 303 VGEKIQIIYIGYNN-LKTFPV-----------ETSLQKMKKLGM-------LECLYNQLE 343
Query: 569 -----IHKCDNIRTLTVE----EGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLP 619
+ +L + I ++ Q++ +S L P
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANF----CGFTEQVENLSFAHN-KLKYIPNIFDA 398
Query: 620 --CAKLTRLEIS-------SCKRLEALPKGLHNLTSLQELTIGR----GVELPSLKEDGL 666
+ ++ ++ S K + L ++ + +
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF---ST 455
Query: 667 PTNLQSLTIEGNM--EIWKSMIERGRGFHRFSSLRQLTIINCDD-DMVSFPPKADDKRLG 723
+ L S+ + GNM EI K+ + F + LT I+ + L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSL--KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513
Query: 724 TALPLPASLTSLWISGFPN-LERLSSSIVDLQNLASLYLGDCPKLKYFPEKG-LPSSLLQ 781
L + +S N + + ++ L + + + P +
Sbjct: 514 -------YLVGIDLSY--NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564
Query: 782 L 782
Sbjct: 565 C 565
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 16/122 (13%)
Query: 144 SILPKLFKLQRLRAFSLRG---------YHIFELPDSIGDLRYLRYLNLSGTEIRTL--P 192
+ L L ++ ++ ++ ++ + + ++T
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 193 ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK-NSNTKSLEEMPVGI-GRLTSLQ 250
S+ K+ L L +L+ G+ KL L N + E+P G ++
Sbjct: 324 TSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYN--QITEIPANFCGFTEQVE 380
Query: 251 TL 252
L
Sbjct: 381 NL 382
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 16/122 (13%)
Query: 146 LPKLFKLQRLRAF-----SLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLY 199
+ + + S+ G + L + + +NLS +I P E +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457
Query: 200 NLHSLLLEDC-------DRLKKLCADMGNLAKLHHLKNSNTKSLEEMP--VGIGRLTSLQ 250
L S+ L + LK + N L + K L ++ L L
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLV 516
Query: 251 TL 252
+
Sbjct: 517 GI 518
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIF-------ELPDSIGDLRYLRYLNLSGTEIRTLPESVN 196
+ L+ F +R E P+ I L L + +IR + E +
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI- 585
Query: 197 KLYNLHSLLLED 208
N+ L ++D
Sbjct: 586 -TPNISVLDIKD 596
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 15/136 (11%), Positives = 37/136 (27%), Gaps = 7/136 (5%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 203
+ +L+ L + + + +++L ++ + +++ NL
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 204 LLLED----CDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGK 259
L C L+ ++ + K L + +L +
Sbjct: 242 FDLRGNGFHCGTLRDF---FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Query: 260 GSGSGLRELKLLTHLH 275
L L H H
Sbjct: 299 LPAPFADRLIALGHHH 314
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 149 LFKLQRLRAFSLRGYHI--FELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLL 206
R++ L+ I + L +LNL I + V L +L L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDL 198
Query: 207 EDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
+L + + + A + + N K L + + +L+
Sbjct: 199 SSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHF 242
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 152 LQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLED 208
Q + L I L D G ++YL+L EI T+ E L L L+
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 209 CDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
+ + + AKL L S+ K L M + +
Sbjct: 179 N-FIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWI 219
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 27/221 (12%), Positives = 60/221 (27%), Gaps = 32/221 (14%)
Query: 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652
L +L L+ + + + G + L ++ + + + + +
Sbjct: 76 LESLSTLRTLDLNNN-YVQELLVG----PSIETLHAANN-NISRVSCS--RGQGKKNIYL 127
Query: 653 GRG--VELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDM 710
L L E +Q L ++ N EI + +L L + +
Sbjct: 128 ANNKITMLRDLDEGCRS-RVQYLDLKLN-EI--DTVNFAELAASSDTLEHLNLQYNF--I 181
Query: 711 VSFPPKADDKRLGTALPLPASLTSLWISGFPN-LERLSSSIVDLQNLASLYLGDCPKLKY 769
+ L +L +S N L + + + L + KL
Sbjct: 182 YDVKGQV---------VFA-KLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRNN-KLVL 228
Query: 770 FPEK-GLPSSLLQLDIWGCPLIEEKCRKDGGQYWDLLTHIP 809
+ +L D+ G +D + +
Sbjct: 229 IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVA 268
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 5/121 (4%)
Query: 133 LSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL 191
L ++ + + K ++ + I + +I L L+ + + +
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463
Query: 192 PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQT 251
+V+ + + + NL L ++ N ++ ++P + L LQ+
Sbjct: 464 NIAVD----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519
Query: 252 L 252
L
Sbjct: 520 L 520
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 49/358 (13%), Positives = 100/358 (27%), Gaps = 54/358 (15%)
Query: 444 KLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKS 503
++ L L KG P+ + L L + L S +
Sbjct: 324 RVTGLS-LAGFGAKGRVPDAIGQLTEL-----KVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 504 AAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLS 563
H KK+ + L ++ + ++ + I+ +
Sbjct: 378 ERKH--RIRMHYKKMFLDYDQRLNLSDLL----QDAINRNPEMKPIKKDSRISLKDTQIG 431
Query: 564 -LKNLL------IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEG 616
L N + I + ++ + ++S + + ++ + +
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYF-----ANSPFTYDNIAVDWEDANSDYAKQYENEELS 486
Query: 617 GLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG----RGVELPSLKEDGLP----- 667
LT +E+ +C + LP L++L LQ L I L
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 668 -TNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTAL 726
+Q + N + + + +L +++C + V A
Sbjct: 547 GPKIQIFYMGYN-NLEEFPASAS-----LQKMVKLGLLDCVHNKVRHLE---------AF 591
Query: 727 PLPASLTSLWISGFPN-LERLSSSI-VDLQNLASLYLGDCPKLKYFPEKGLPSSLLQL 782
LT L + N +E + + L KLKY P S+ +
Sbjct: 592 GTNVKLTDLKLDY--NQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVM 646
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 77/631 (12%), Positives = 165/631 (26%), Gaps = 146/631 (23%)
Query: 209 CDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL---CNFVVGKGSGSGL 265
+ D+ N ++ L + + +P IG+LT L+ L + G G
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 266 RELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIE 325
EL I + LD + L L + + +
Sbjct: 369 EELTPDMSEERKHRIRMHYK--------KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420
Query: 326 KDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCD-MCTALP-SVGQL 383
S +L + N T + ++ +L
Sbjct: 421 ---------------------------------SRISLKDTQIGNLTNRITFISKAIQRL 447
Query: 384 PSLKHLAVCGMSRVKRLGSEFYGND--SPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEG 441
L+ + + + E + +++E+ L
Sbjct: 448 TKLQIIYF-------------ANSPFTYDNIAVDWEDANSDYAKQYEN-EEL----SWSN 489
Query: 442 FPKLRELHILRCSKLKGTFPE---HLPALEMLV-----IEGCEELLVSVTSLPALCKFIS 493
L ++ + C + P+ LP L+ L +L T L
Sbjct: 490 LKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE---- 544
Query: 494 GGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLT 553
K ++ + + L+ P + L + +
Sbjct: 545 DTGPK----------------IQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VR 586
Query: 554 YIAAVQLPLSLKNL-------------LIHKCDNIRTLTVEE-GIQSSSSRSGLHNLRQL 599
++ A + L +L D + L ++ + ++ +
Sbjct: 587 HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646
Query: 600 QEISIRRCGNLVSFPE------GGLPCAKLTRLEISSCKRLEALPKG-LHNLTSLQEL-- 650
+ + S + + +S + ++ P + + +
Sbjct: 647 GSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIIL 704
Query: 651 ------TIGRGVELPSLKEDGLPTNLQSLTIEGNM--EIWKSMIERGRGFHRFSSLRQLT 702
+I P L ++ + N + R ++L L+
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF--------RATTLPYLS 756
Query: 703 IINCDDDMVS-FPPKADD-KRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLY 760
++ + S FP + + +L A + G L + + I +L L
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQL-KAFGI---RHQRDAEGNRILRQWPTGITTCPSLIQLQ 812
Query: 761 LGDCPKLKYFPEKGLPSSLLQLDIWGCPLIE 791
+G ++ EK P L LDI P I
Sbjct: 813 IGSN-DIRKVDEKLTP-QLYILDIADNPNIS 841
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 20/111 (18%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSI--GDLRYLRYLNLSGTEIRTLPESVNKLYNL 201
L LR + L D L YL +++S + P L
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778
Query: 202 HSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
+ + H + L + P GI SL L
Sbjct: 779 KAFGI------------------RHQRDAEGNRILRQWPTGITTCPSLIQL 811
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 13/120 (10%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESVN------ 196
S +K +L I + P + + + LS + ++PE+
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723
Query: 197 --KLYNLHSLLLEDCDRLKKLCADM--GNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
Y L ++ L +L L D L L ++ S P + L+
Sbjct: 724 YKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAF 781
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 28/279 (10%), Positives = 60/279 (21%), Gaps = 54/279 (19%)
Query: 119 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL 178
++ + + +L L+ R + +
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427
Query: 179 RYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEE 238
+ I + +++ +L L + + + + K E
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVD----WEDANSDYAKQYEN 482
Query: 239 MPVGIGRLTSLQTL----CNFVVGKGSGS---GLRELKLLTHLHGTLN-ISKLENVKDVG 290
+ L L + C L +L L L+ N +K
Sbjct: 483 EELSWSNLKDLTDVELYNCPN-----MTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537
Query: 291 DAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTK 350
D ++ + + N L +
Sbjct: 538 TRLADDEDTGPKIQIFYMGY-------------------NNL----------------EE 562
Query: 351 FPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHL 389
FP L L+ + + L + G L L
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDL 600
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 12/113 (10%)
Query: 149 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLE 207
L K+ +L + L + G L L L +I +PE + L
Sbjct: 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627
Query: 208 DCDRLKKL--CADMGNLAKLHHLKNSNTKSLEEMPVGIG------RLTSLQTL 252
+LK + + ++ + + S K + I + + T+
Sbjct: 628 HN-KLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTV 678
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 11/169 (6%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 203
+ +L+ L + + + +++L ++ + +++ NL
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 204 LLLED----CDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGK 259
L C L+ + + + E + L C +
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 260 GSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLL 308
L LK H + S+ E + E + + + RE+
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERL-------ECERENQARQREIDA 343
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 149 LFKLQRLRAFSLRGYHIFELPDS--IGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLL 206
R++ L+ I + + L +LNL I + V L +L L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDL 198
Query: 207 EDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
+L + + + A + + N K L + + +L+
Sbjct: 199 SSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHF 242
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 94/585 (16%), Positives = 193/585 (32%), Gaps = 121/585 (20%)
Query: 144 SILPKLFK-LQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESV-NKLYN 200
I + L+ L+ I + L L +L+LS + +L S L +
Sbjct: 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99
Query: 201 LHSLLLEDCDRLKKL--CADMGNLAKLHHLKNSNTKSLEEMPVG-IGRLTSLQTL---CN 254
L L L + L + NL L L+ N ++ E+ LTSL L
Sbjct: 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158
Query: 255 FVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLST 314
+ S S L+ ++ + HL L++S+ + ++ D ++R L LR
Sbjct: 159 SLRNYQSQS-LKSIRDIHHLT--LHLSESAFLLEI------FADILSSVRYLELR----- 204
Query: 315 DGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMC 374
NL +F S + + +F V + ++
Sbjct: 205 --------------------DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 375 TALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLR 434
L + +L + C ++ + S + + T+R + ++ +
Sbjct: 245 KLLRYILELSEV-EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFYD 301
Query: 435 SGQGVEGFPKLRELHILRC--SKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFI 492
K++ + + + +F +HL +LE L + L+V + CK
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN--LMVEEYLKNSACK-- 357
Query: 493 SGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSL 552
L+ + + + L+S+ + +L +L
Sbjct: 358 -----------------GAWPSLQTLVLSQNH-LRSMQK--TGEILLTL--------KNL 389
Query: 553 TYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVS 612
T L +S +N D+ + +++ +++ +
Sbjct: 390 TS-----LDIS-RNTFHPMPDSCQWPE------------------KMRFLNLSST-GIRV 424
Query: 613 FPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQS 672
L L++S+ L++ L LQEL I +L +L + L L
Sbjct: 425 VKTCIPQ--TLEVLDVSNN-NLDSFSL---FLPRLQELYI-SRNKLKTLPDASLFPVLLV 477
Query: 673 LTIEGNMEIWKSMIERGRGFHRFSSLRQLTI----INCDDDMVSF 713
+ I N ++ + G F R +SL+++ + +C + +
Sbjct: 478 MKISRN-QL--KSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDY 518
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 48/270 (17%), Positives = 82/270 (30%), Gaps = 44/270 (16%)
Query: 538 NSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLR 597
S L D S + L ++ L L + C S G
Sbjct: 232 GSVLTDESFNELLKL-----LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286
Query: 598 QLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKG-LHNLTSLQELTIGR-- 654
++ + I + K+ R+ + + K + +P +L SL+ L +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENL 345
Query: 655 --GVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDD-DMV 711
L + G +LQ+L + N + + +L+ LT ++
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQN-----HLRSMQKTGEILLTLKNLTSLDISRNTFH 400
Query: 712 SFPPKADDKRLGTALPLPASLTSLWISG----------FPNLE-------RLSSSIVDLQ 754
P + P + L +S LE L S + L
Sbjct: 401 PMPD---------SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP 451
Query: 755 NLASLYLGDCPKLKYFPEKGLPSSLLQLDI 784
L LY+ KLK P+ L LL + I
Sbjct: 452 RLQELYISRN-KLKTLPDASLFPVLLVMKI 480
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 40/288 (13%), Positives = 85/288 (29%), Gaps = 33/288 (11%)
Query: 511 QNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIH 570
S + D L S+ + +++L + ++ L+ + ++
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELR--DTNLARFQFSPLPVDEVSSPMKK-LAFRGSVLT 236
Query: 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISS 630
L + I S + + V G + + RL I
Sbjct: 237 DESFNELLKLLRYILELSEVE-FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295
Query: 631 CKRLEALPKGLHNLTSLQELTIGRG--VELPSLKEDGLPTNLQSLTIEGNMEIWKSMIER 688
L L ++ +T+ +P L +L+ L + N + + ++
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSEN-LMVEEYLKN 353
Query: 689 GRGFHRFSSLR-------QLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFP 741
+ SL+ L + +++ L +LTSL IS
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILL--------------TLK-NLTSLDISR-N 397
Query: 742 NLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPL 789
+ S + + L L ++ +P +L LD+ L
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNNNL 443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 26/197 (13%)
Query: 102 HLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLR 161
H+ + D + L ++ + T+ NS + S L L+ L L
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRI------TVENSKVFLVPCSFSQHLKSLEFLD---LS 342
Query: 162 G----YHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCD--RLKKL 215
+ G L+ L LS +R++ ++ L L +L D +
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402
Query: 216 CADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL----CNFVVGKGSGSGLRELKL- 270
K+ L S+T + + I +L+ L N L+EL +
Sbjct: 403 PDSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYIS 459
Query: 271 ---LTHLHGTLNISKLE 284
L L L
Sbjct: 460 RNKLKTLPDASLFPVLL 476
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 54/365 (14%), Positives = 108/365 (29%), Gaps = 73/365 (20%)
Query: 32 SGNPSEDLGRKFFRELRARSFIQQSSNSISRFLMHDLINDLAQWAAGEIYFRMEYTSEVN 91
+ S L F L + +++ +++RF L D ++ FR ++
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE- 238
Query: 92 KQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFK 151
SF+E L+ L YI E + L + +S +
Sbjct: 239 ---SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT-------- 287
Query: 152 LQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDC 209
+R + +++F ++ L ++ + + +++ +P S L +L L L +
Sbjct: 288 ---IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 210 ---DRLKKLCADMGNLAKLHHLKNSNTK--SLEEMPVGIGRLTSLQTLCNFVVGKGSGSG 264
+ K A G L L S S+++ + L +L +L
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL------------ 392
Query: 265 LRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEI 324
+ + + + +R L L SS+ +
Sbjct: 393 --------DISRN-TFHPMPD----------SCQWPEKMRFLNL--------SSTGIRVV 425
Query: 325 EKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLP 384
+ + LE +S F L L + LP P
Sbjct: 426 KTCIPQ------TLEVLDVSNNNLDSFS-----LFLPRLQELYISRNKL-KTLPDASLFP 473
Query: 385 SLKHL 389
L +
Sbjct: 474 VLLVM 478
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 36/205 (17%), Positives = 63/205 (30%), Gaps = 19/205 (9%)
Query: 593 LHNLRQLQEISIRRCGNLVSFPEGGL-PCAKLTRLEISSCKRLEALPKG--LHNLTSLQE 649
++L L+ + + +L S P + L L + + L NLT+LQ
Sbjct: 70 FYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQT 127
Query: 650 LTIGRGVELPSLKEDGLP--TNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCD 707
L IG ++ T+L L I+ + + S+R + +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SL--RNYQSQ----SLKSIRDIHHLTLH 180
Query: 708 DDMVSFPPKADDKRLG--TALPLPA-SLTSLWISGFPNLERLSSSIVDLQNLASLYLGDC 764
+F + L L L +L S P E S + L D
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP--MKKLAFRGSVLTDE 238
Query: 765 PKLKYFPEKGLPSSLLQLDIWGCPL 789
+ L +++ C L
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTL 263
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 82/526 (15%), Positives = 156/526 (29%), Gaps = 101/526 (19%)
Query: 169 PDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 227
I L LR L +S I+ L SV L L L +L K+ L H
Sbjct: 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKH 94
Query: 228 LK-NSNTKSLEEMPVG--IGRLTSLQTLCNFVVGKGSGSGLRELKL--LTHLHGTLNISK 282
L + N + + +P+ G ++ L+ L S + L + + + HL+ + +
Sbjct: 95 LDLSFN--AFDALPICKEFGNMSQLKFLGL------STTHLEKSSVLPIAHLNISKVLLV 146
Query: 283 LENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFC 342
L ++ +G ++ L T+ ++ + L+ N++
Sbjct: 147 LGETY----GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS-NIKCVL 201
Query: 343 ISGYGGTKFPTWFGDSSFSNLVTLEFENCDMC-TALPSVGQLPSLKHLAVCGMSRVKRLG 401
+ L L N + + + QL + +S VK L
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQ 260
Query: 402 SEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILR--CSKLKGT 459
+ D L+ L + P + ++I S +
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI-----YEIFSNMNIKNFTVSGTRMV 315
Query: 460 ---FPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLK 516
P + L S N L
Sbjct: 316 HMLCPSKISPFLHLDF-------------------------------------SNNL-LT 337
Query: 517 KIEIRECDALKSLPEAWMCGTN-SSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNI 575
C L L + L ++ + SL+ L I +
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIA-EMTTQMK---------SLQQLDISQN--- 384
Query: 576 RTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE 635
+ + + L +++ L LP ++ L++ S K ++
Sbjct: 385 -------SVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP-PRIKVLDLHSNK-IK 434
Query: 636 ALPKGLHNLTSLQELTIGRGVELPSLKE---DGLPTNLQSLTIEGN 678
++PK + L +LQEL + +L S+ + D L +LQ + + N
Sbjct: 435 SIPKQVVKLEALQELNV-ASNQLKSVPDGIFDRLT-SLQKIWLHTN 478
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 2e-09
Identities = 36/256 (14%), Positives = 74/256 (28%), Gaps = 71/256 (27%)
Query: 3 CSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSISR 62
S+FP + L+W + + +L S +++ S
Sbjct: 378 LSVFPPSAHIPTILLSLIWF-----------DVIKSDVMVVVNKLHKYSLVEKQPKE-ST 425
Query: 63 FLMHDLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYC--DGVKRFEDLY 120
+ + Y ++ E N+ + H + + D + + D Y
Sbjct: 426 ISIPSI------------YLELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 121 DIQHLRTFLPVTLSNSSRG-HLA-------YSILPKLFKL------QRLRAFSLRGYHIF 166
H+ G HL ++ +F L Q++R S
Sbjct: 473 FYSHI-------------GHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASG 518
Query: 167 ELPDSIGDLR-YLRYLNLSGTEIRTLPESVNKLYNLHSLLL---EDCDRLKKLCADMGNL 222
+ +++ L+ Y Y+ + E + + L E+ K D+ +
Sbjct: 519 SILNTLQQLKFYKPYI----CDNDPKYER--LVNAILDFLPKIEENLICSK--YTDLLRI 570
Query: 223 AKLHHLKNSNTKSLEE 238
A L + EE
Sbjct: 571 A----LMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 3e-08
Identities = 97/642 (15%), Positives = 173/642 (26%), Gaps = 190/642 (29%)
Query: 96 FSENLRHLSY---IPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKL 152
F Y + + D D D+Q LS +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQD---MPKSILSK------------EEID- 52
Query: 153 QRLRAFSLRGYHIFELPDSIGDLRYLRY-LNLSGTEI--RTLPESVNKLYN-LHSLLLED 208
HI D++ L + L E+ + + E + Y L S + +
Sbjct: 53 -----------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 209 C-----------DRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVV 257
++ +L D AK + + L + L L+ N ++
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELRPAKNVLI 155
Query: 258 -G-KGSG------SGLRELKLLTHLHGT---LNISKLENVKDVGDAKEAQLDGKKNL-RE 305
G GSG K+ + LN+ ++ E L+ + L +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-------NSPETVLEMLQKLLYQ 208
Query: 306 LLLRWTLSTDGSSSREAEIE--KDVLNML---KPHEN-------------LEQF---C-- 342
+ WT +D SS+ + I + L L KP+EN F C
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 343 ------------ISGYGGTKFPTWFGDSSFSNLVTLE-FENC-DM-CTALPSVGQLPSLK 387
+S T + + D LP + +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 388 HLAVCG-MSRVKRLGSEFYGNDSPIPF-----LCLETLRFEDMQEW--------ED-WIP 432
L++ R + + + + L L + ++ IP
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 433 LR---------SGQGVEGFPKLRELH---ILRCSKLKGTFPEHLPALEMLVIEGCEELLV 480
V + +LH ++ + T +P++ + + E
Sbjct: 389 TILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYA 444
Query: 481 S----VTSLPALCKFISGGCKKVV----WKSAAG-HPGSQNSVLKKIEIRECDALKS--- 528
V F S + S G H LK IE E L
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------LKNIEHPERMTLFRMVF 497
Query: 529 LPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLI-------HKCDNIRTLTVE 581
L ++ + IR H T A S+ N L + CDN E
Sbjct: 498 LDFRFL--------EQKIR--HDST---AWNASGSILNTLQQLKFYKPYICDNDPKY--E 542
Query: 582 EGIQSSSSRSGLHNLRQLQEISIR-RCGNLV----SFPEGGL 618
+ + L L +++E I + +L+ + +
Sbjct: 543 RLVNAI-----LDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 86/548 (15%), Positives = 171/548 (31%), Gaps = 101/548 (18%)
Query: 144 SILPKLFK-LQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLPESV-NKLYN 200
+ F L+ L I + + L +L L L+G I++L + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 201 LHSLLLEDCDRLKKLCADM-GNLAKLHHLKNSNTKSLEEMPVG--IGRLTSLQTL--CNF 255
L L+ + L L G+L L L ++ ++ + LT+L+ L +
Sbjct: 102 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159
Query: 256 VVGKGSGSGLRELKLLTHLHGTLNISK--------------------LENVKDVGDAKEA 295
+ + LR L + L+ +L++S L N D + +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219
Query: 296 QLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWF 355
+ G L L L + + +K L L + +E+F ++
Sbjct: 220 CIQGLAGLEVHRL--VLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRLAYLDYYLDDIID 276
Query: 356 GDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLC 415
+ +N+ + + + + +HL + P L
Sbjct: 277 LFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKF------------GQFPTLK 323
Query: 416 LETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHI----LRCSKLKGTFPEHLPALEMLV 471
L++L+ + P L L + L +L+ L
Sbjct: 324 LKSLKRLTFTS----NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 472 IEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPE 531
+ V ++ + G + L+ ++ + + LK + E
Sbjct: 380 LSFN-----GVITMS------------------SNFLGLEQ--LEHLDFQHSN-LKQMSE 413
Query: 532 AWMCGTNSSLE--DMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS 589
+ + +L D+S L SL+ L + Q +
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGN----------SFQENFL 462
Query: 590 RSGLHNLRQLQEISIRRCGNLVSFPEG---GLPCAKLTRLEISSCKRLEALPKG-LHNLT 645
LR L + + +C L L L L ++S +L+++P G LT
Sbjct: 463 PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS--SLQVLNMASN-QLKSVPDGIFDRLT 518
Query: 646 SLQELTIG 653
SLQ++ +
Sbjct: 519 SLQKIWLH 526
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 8/137 (5%)
Query: 122 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL---PDSIGDLRYL 178
T +L + L L L + S L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 179 RYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKL--CADMGNLAKLHHLKNSNTKSL 236
+YL+LS + T+ + L L L + LK++ + +L L +L S+T
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-T 433
Query: 237 EEMPVGI-GRLTSLQTL 252
GI L+SL+ L
Sbjct: 434 RVAFNGIFNGLSSLEVL 450
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 90/584 (15%), Positives = 183/584 (31%), Gaps = 84/584 (14%)
Query: 158 FSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLC 216
+ + +++PD++ + L+LS +R L L L L C ++ +
Sbjct: 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIE 68
Query: 217 ADM-GNLAKLHHLKNSNTKSLEEMPVGI-GRLTSLQTL---CNFVVGKGSGSGLRELKLL 271
+L+ L L + ++ + +G L+SLQ L + + + LK L
Sbjct: 69 DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTL 126
Query: 272 THLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNM 331
L+ + + +++ K NL L L SS++ I L +
Sbjct: 127 KELN--VAHNLIQSFKL-----PEYFSNLTNLEHLDL--------SSNKIQSIYCTDLRV 171
Query: 332 LKPHENLEQFCISGYGGTKFPTWFGDSSFS--NLVTLEFENCDMCTALPSVGQLPSLKHL 389
L + +S + +F L L N + + L L
Sbjct: 172 LH---QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGL 227
Query: 390 AVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWED-WIPLRSGQGVEGFPKLREL 448
V R+ GN LE L ++E+ ++ ++ F L +
Sbjct: 228 EV---HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 449 HILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHP 508
+ + + L + K++ +
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGW-----QHLELVNCKFGQFPTLKLKSLKRLTF------- 332
Query: 509 GSQNSVLKKIEIRECDALKSLPEAWMCG---TNSSLEDMSIRQCHSLTYIAAVQLPLSLK 565
+ N + +L+ L + + S SL Y+ LS
Sbjct: 333 -TSNKGGNAFSEVDLPSLEFL---DLSRNGLSFKGCCSQSDFGTTSLKYLD-----LSFN 383
Query: 566 NL-----LIHKCDNIRTLTVEE-GIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEG--- 616
+ + + L + ++ S S +LR L + I + G
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFN 442
Query: 617 GLPCAKLTRLEISSCKRLEALPKG-LHNLTSLQELTIG--RGVELPSLKEDGLPTNLQSL 673
GL L L+++ E L +L L + + +L + L ++LQ L
Sbjct: 443 GLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVL 499
Query: 674 TIEGNMEIWKSMIERGRGFHRFSSLRQLTI----INCDDDMVSF 713
+ N ++ + G F R +SL+++ + +C + +
Sbjct: 500 NMASN-QL--KSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDY 539
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 146 LPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSL 204
LP L +L+ L + G + LP L L + T + LP L L
Sbjct: 76 LPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPS------GLCKL 126
Query: 205 LLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCN 254
+ +L L L +L N L +P L L N
Sbjct: 127 WIFGN-QLTSLPVLPPGLQELSVSDN----QLASLPALPSELCKLWAYNN 171
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 23/122 (18%)
Query: 146 LPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLY----- 199
LP L LQ L S+ + LP +L L N T + LP + +L
Sbjct: 176 LPMLPSGLQEL---SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR 232
Query: 200 ---------NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQ 250
L L++ RL L L L +N L +P + L+S
Sbjct: 233 LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN----QLTRLPESLIHLSSET 287
Query: 251 TL 252
T+
Sbjct: 288 TV 289
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 11/166 (6%)
Query: 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLL 205
LP L L + S+ + LP+S+ L +NL G + + + S
Sbjct: 256 LPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EITSAP 311
Query: 206 LEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGL 265
++ A + L + L +P G F + +
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGEPAPADRWHMFGQEDNADAFS 369
Query: 266 RELKLLTHLHGTLNISKL-ENVKDVGDAKEAQLDGKKNLRELLLRW 310
L L+ + + + QL + LR
Sbjct: 370 LFLDRLSETENFIKDAGFKAQISSWLA----QLAEDEALRANTFAM 411
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 7e-05
Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 42/150 (28%)
Query: 622 KLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEI 681
L L +S +L +LP L L R LP+L P+ L+ L + GN
Sbjct: 182 GLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN--- 231
Query: 682 WKSMIERGRGFHRFSSL----RQLTIINCDDDMVSFPPKADDKRLGTALP-LPASLTSLW 736
R +SL +L + + + T+LP LP+ L SL
Sbjct: 232 ------------RLTSLPVLPSELKELMVSGNRL------------TSLPMLPSGLLSLS 267
Query: 737 ISGFPN-LERLSSSIVDLQNLASLYLGDCP 765
+ N L RL S++ L + ++ L P
Sbjct: 268 VYR--NQLTRLPESLIHLSSETTVNLEGNP 295
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 178 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE 237
LN+ + + TLP+ + ++ +L++ D L L A L L N L
Sbjct: 42 NAVLNVGESGLTTLPDCLPA--HITTLVIPDN-NLTSLPALPPELRTLEVSGN----QLT 94
Query: 238 EMPVGIGRLTSLQTLCN 254
+PV L L N
Sbjct: 95 SLPVLPPGLLELSIFSN 111
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 41/252 (16%), Positives = 70/252 (27%), Gaps = 63/252 (25%)
Query: 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRC 607
C + I LP S + L + + ++RT+ NL + I +
Sbjct: 19 TCKDIQRIP--SLPPSTQTLKLIET-HLRTI----------PSHAFSNLPNISRIYVSID 65
Query: 608 GNLVSFPEG---GLPCAKLTRLEISSCKRLEALPKG-LHNLTSLQELTIGRG--VELPSL 661
L L K+T +EI + + L + L L L+ L I P L
Sbjct: 66 VTLQQLESHSFYNLS--KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123
Query: 662 KEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKR 721
+ L I N + + I +F
Sbjct: 124 TKVYSTDIFFILEITDNPYM--TSIPVN----------------------AFQ------- 152
Query: 722 LGTALPLPASLTSLWISGFPN-LERLSSSIVDLQNLASLYLGDCPKLKYFPE---KGLPS 777
L +L + N + + L ++YL L + G+ S
Sbjct: 153 -----GLCNETLTLKLYN--NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205
Query: 778 SLLQLDIWGCPL 789
LD+ +
Sbjct: 206 GPSLLDVSQTSV 217
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 79/494 (15%), Positives = 156/494 (31%), Gaps = 95/494 (19%)
Query: 349 TKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHL-----------AVCGMSRV 397
T F D++ + + ++ T S L + L V ++ +
Sbjct: 12 TPINQIFTDTALAEKMKTVLGKTNV-TDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 70
Query: 398 KRLGSEFYGND-SPIPFLC----LETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILR 452
++ F N + I L L + + Q + + L L L
Sbjct: 71 TQI--NFSNNQLTDITPLKNLTKLVDILMNNNQ-------IADITPLANLTNLTGLT-LF 120
Query: 453 CSKLKGTFP-EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQ 511
+++ P ++L L L + +++ + AL G + S
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSN-----TISDISAL-----SGLTSLQQLSF------G 164
Query: 512 NSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMS-IRQCHSLTYIAAVQLPLSLKNLLIH 570
N V + L+ L +N + D+S + + +L L N I
Sbjct: 165 NQVTDLKPLANLTTLERL----DISSN-KVSDISVLAKLTNLES-------LIATNNQIS 212
Query: 571 KCDNIRTLTVEEGIQSSSSR----SGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTR 625
+ LT + + + ++ L +L L ++ + + + GL KLT
Sbjct: 213 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAPLSGLT--KLTE 269
Query: 626 LEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSM 685
L++ + + + + L LT+L L + +L + NL LT+ N
Sbjct: 270 LKLGANQ-ISNIS-PLAGLTALTNLELN-ENQLEDISPISNLKNLTYLTLYFN------- 319
Query: 686 IERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLER 745
SSL +L + ++ VS +L ++ L N
Sbjct: 320 --NISDISPVSSLTKLQRLFFYNNKVSDVS---------SLANLTNINWLSAGH--NQIS 366
Query: 746 LSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCR-KDGGQY--- 801
+ + +L + L L D S+ + DGG Y
Sbjct: 367 DLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEP 426
Query: 802 ---WDLLTHIPDVT 812
W+L ++ +V+
Sbjct: 427 DITWNLPSYTNEVS 440
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 66/511 (12%), Positives = 146/511 (28%), Gaps = 125/511 (24%)
Query: 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLL 205
L ++ I + + L L +N S ++ + + L L +L
Sbjct: 39 TVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDIL 96
Query: 206 LEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC---NFVVGKGSG 262
+ + ++ + + NL L L N + + ++ + LT+L L N +
Sbjct: 97 MNNN-QIADI-TPLANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSNTISDI--- 149
Query: 263 SGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREA 322
S L L L L ++ L+ L L L + +D
Sbjct: 150 SALSGLTSLQQLSFGNQVTDLKP-----------LANLTTLERLDISSNKVSD------- 191
Query: 323 EIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQ 382
+++L NLE + + +NL L + + ++
Sbjct: 192 ------ISVLAKLTNLESLIAT---NNQISDITPLGILTNLDELSLNGNQL-KDIGTLAS 241
Query: 383 LPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGF 442
L +L L + N + + PL G
Sbjct: 242 LTNLTDL-------------DLANN------------------QISNLAPL------SGL 264
Query: 443 PKLRELHILRCSKLKGTFP-EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVW 501
KL EL L +++ P L AL L + + + + + +
Sbjct: 265 TKLTELK-LGANQISNISPLAGLTALTNLELNENQ-----LEDISPISNLKN-------- 310
Query: 502 KSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLP 561
L + + + + + + + L+ + ++ ++++
Sbjct: 311 -------------LTYLTLYFNN-ISDISPV---SSLTKLQRLFFYNNK-VSDVSSLANL 352
Query: 562 LSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCA 621
++ L I L + L NL ++ ++ + + P
Sbjct: 353 TNINWLSAGHN-QISDL------------TPLANLTRITQLGLNDQ-AWTNAPVNYKANV 398
Query: 622 KLTRLEISSCKRLEALPKGLHNLTSLQELTI 652
+ + + P + + S E I
Sbjct: 399 SIPNT-VKNVTGALIAPATISDGGSYTEPDI 428
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 62/449 (13%), Positives = 133/449 (29%), Gaps = 89/449 (19%)
Query: 336 ENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHL------ 389
+ + G G +NL + F N + T + + L L +
Sbjct: 46 DQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQL-TDITPLKNLTKLVDILMNNNQ 101
Query: 390 -----AVCGMSRVKRLGSEFYGND-SPIPFLC----LETLRFEDMQEWEDWIPLRSGQGV 439
+ ++ + L + N + I L L L + +
Sbjct: 102 IADITPLANLTNLTGL--TLFNNQITDIDPLKNLTNLNRLELSSNT-------ISDISAL 152
Query: 440 EGFPKLRELHILRCSKLKGTFP-EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKK 498
G L++L +++ P +L LE L I + V+ + L
Sbjct: 153 SGLTSLQQLSF--GNQVTDLKPLANLTTLERLDISSNK-----VSDISVL-----AKLTN 200
Query: 499 VVWKSAAG------HPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSL 552
+ A P + L ++ + LK + + ++L D+ + +
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIGTL---ASLTNLTDLDLANNQ-I 255
Query: 553 TYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVS 612
+ +A + L L + I + S L L L + + N +
Sbjct: 256 SNLAPLSGLTKLTELKLGAN-QISNI------------SPLAGLTALTNLELN--ENQLE 300
Query: 613 FPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQS 672
LT L + + + + +LT LQ L ++ + TN+
Sbjct: 301 DISPISNLKNLTYLTLYFNN-ISDIS-PVSSLTKLQRLFF-YNNKVSDVSSLANLTNINW 357
Query: 673 LTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732
L+ N +I ++L ++T + +D + P + S+
Sbjct: 358 LSAGHN-QI--------SDLTPLANLTRITQLGLNDQAWTNAPVNYKANV--------SI 400
Query: 733 TSLWISGFPNLERLSSSIVDLQNLASLYL 761
+ + ++I D + +
Sbjct: 401 PNT-VKNVTGALIAPATISDGGSYTEPDI 428
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 60/365 (16%), Positives = 106/365 (29%), Gaps = 59/365 (16%)
Query: 438 GVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCK 497
G+E L +L + + L L + + + VT L L K
Sbjct: 59 GIEKLTGLTKLI-CTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNK 117
Query: 498 KVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAA 557
L K+++ + L L C N+ L ++ + LT +
Sbjct: 118 -----------------LTKLDVSQNPLLTYL----NCARNT-LTEIDVSHNTQLTELDC 155
Query: 558 VQLPLSLKNLLIHKCDNIRTLTVEE-GIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEG 616
+ L + + TL I + + L ++ N+
Sbjct: 156 HLNKK-ITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTN-NITKLDLN 209
Query: 617 GLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIE 676
+LT L+ SS K L + + LT L L L L + L +L
Sbjct: 210 QNI--QLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN-PLTELDVSTL-SKLTTLHCI 262
Query: 677 GNMEIWKSMIERGRGFHRFSSLRQLTIINCDDD-MVSFPPKADDKRLGTALPLPA-SLTS 734
++ I+ + QL + + + +L L A +T
Sbjct: 263 QT-DL--LEID-------LTHNTQLIYFQAEGCRKIKELDVTHNTQL-YLLDCQAAGITE 311
Query: 735 LWISGFPNLERLSSS--------IVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWG 786
L +S P L L + + L SL + ++ F G +L
Sbjct: 312 LDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA-HIQDFSSVGKIPALNNNFEAE 370
Query: 787 CPLIE 791
I
Sbjct: 371 GQTIT 375
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 42/249 (16%), Positives = 80/249 (32%), Gaps = 38/249 (15%)
Query: 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCD 210
+L D + L L+ S +I L V++ L+ L +
Sbjct: 146 HNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN- 201
Query: 211 RLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL-CNF----VVGKGSGSGL 265
+ KL D+ +L L S+ K L E+ + LT L C+ + + S L
Sbjct: 202 NITKL--DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKL 256
Query: 266 RELKLLTHLHGTLNISKLENVKDVGDAKEAQLD-----GKKNLRELLLRWTLSTDGSSSR 320
L + ++++ + ++ L L +
Sbjct: 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA--------- 307
Query: 321 EAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSV 380
I + L+ L ++ T+ T S + L +L N + SV
Sbjct: 308 --GITELDLSQNP---KLVYLYLNN---TEL-TELDVSHNTKLKSLSCVNAHI-QDFSSV 357
Query: 381 GQLPSLKHL 389
G++P+L +
Sbjct: 358 GKIPALNNN 366
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 49/270 (18%), Positives = 85/270 (31%), Gaps = 52/270 (19%)
Query: 155 LRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDC--- 209
+++ L I + +S L+ L L+ I T+ E + L +L L L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 210 -------DRLKKL---------------CADMGNLAKLHHLKNSNTKSLEEMPVGI-GRL 246
L L + +L KL L+ N + ++ L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 247 TSLQTL----CNF-VVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKK 301
T L+ L + S ++ + L LH L E +D
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHL-ILHM-KQHILLL---------EIFVDVTS 222
Query: 302 NLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFS 361
++ L LR TD + +E+ N L I+ + S
Sbjct: 223 SVECLELRD---TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--IS 277
Query: 362 NLVTLEFENCDMCTALPS--VGQLPSLKHL 389
L+ LEF + ++P +L SL+ +
Sbjct: 278 GLLELEFSRNQL-KSVPDGIFDRLTSLQKI 306
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 88/562 (15%), Positives = 167/562 (29%), Gaps = 125/562 (22%)
Query: 144 SILPKLFK-LQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTL--PESVNKLY 199
S+ F L L+ ++ L IG L+ L+ LN++ I++ PE + L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK------SLEEMPVGIGRLTSLQTL- 252
NL L L +++ + L LH + N + + G + L L
Sbjct: 150 NLEHLDLSSN-KIQSIYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 253 --CNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRW 310
NF + ++ L L L + + N ++ ++ L+G NL R
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHR--LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR- 263
Query: 311 TLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFEN 370
L L + + F + +N+ + +
Sbjct: 264 ------------------LAYLDYYLDD------------IIDLF--NCLTNVSSFSLVS 291
Query: 371 CDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDW 430
+ + +HL L + +G + L+ L F +
Sbjct: 292 VTI-ERVKDFSYNFGWQHL---------ELVNCKFGQFPTLKLKSLKRLTFTSNK----- 336
Query: 431 IPLRSGQGVEGFPKLRELHILRCSK----LKGTFPE---HLPALEMLVIEGCEELLVSVT 483
G L L L S+ KG + +L+ L + V
Sbjct: 337 -----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-----GVI 386
Query: 484 SLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLED 543
++ + G ++ L+ ++ + + LK + E + + +L
Sbjct: 387 TMSSNF----LGLEQ----------------LEHLDFQHSN-LKQMSEFSVFLSLRNLIY 425
Query: 544 MSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE-GIQSSSSRSGLHNLRQLQEI 602
+ I H L ++ L + Q + LR L +
Sbjct: 426 LDISHTH-TRVA----FNGIFNGL-----SSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 603 SIRRCGNLVSFPEGGLP-CAKLTRLEISSCKRLEALPKG-LHNLTSLQELTIGR----GV 656
+ +C L + L L +S +L L SLQ L
Sbjct: 476 DLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 657 ELPSLKEDGLPTNLQSLTIEGN 678
+ L+ P++L L + N
Sbjct: 534 KKQELQ--HFPSSLAFLNLTQN 553
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 33/163 (20%), Positives = 50/163 (30%), Gaps = 11/163 (6%)
Query: 122 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRG---YHIFELPDSIGDLRYL 178
T +L + L L L S L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 179 RYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKL--CADMGNLAKLHHLKNSNTKSL 236
+YL+LS + T+ + L L L + LK++ + +L L +L S+T
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-T 433
Query: 237 EEMPVG-IGRLTSLQTLC---NFVVGKGSGSGLRELKLLTHLH 275
G L+SL+ L N EL+ LT L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 14/148 (9%)
Query: 144 SILPKLFK-LQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYN 200
+ F L+ L I + + L +L L L+G I++L + L +
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 201 LHSLLLEDCDRLKKL-CADMGNLAKLHHL---KNSNTKSLEEMPVGIGRLTSLQTLC--- 253
L L+ + L L +G+L L L N ++P LT+L+ L
Sbjct: 102 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSS 158
Query: 254 NFVVGKGSGSGLRELKLLTHLHGTLNIS 281
N + LR L + L+ +L++S
Sbjct: 159 NKIQSIYCTD-LRVLHQMPLLNLSLDLS 185
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 32/202 (15%)
Query: 593 LHNLRQLQEISIRRCGNLVSFPEG---GLPCAKLTRLEISSCKRLEALPKGL-HNLTSLQ 648
+NL L+ + +R L P G GL LT+L+IS ++ L + +L +L+
Sbjct: 76 FNNLFNLRTLGLRSN-RLKLIPLGVFTGLS--NLTKLDISEN-KIVILLDYMFQDLYNLK 131
Query: 649 ELTIGRGVELPSLKED---GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705
L +G +L + GL +L+ LT+E + + I S L L ++
Sbjct: 132 SLEVGDN-DLVYISHRAFSGLN-SLEQLTLEKC-NL--TSIPTEA----LSHLHGLIVLR 182
Query: 706 CDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCP 765
++ KRL L L IS +P L+ ++ + + NL SL + C
Sbjct: 183 LRHLNINAIRDYSFKRLY-------RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC- 234
Query: 766 KLKYFPE---KGLPSSLLQLDI 784
L P + L L L++
Sbjct: 235 NLTAVPYLAVRHLV-YLRFLNL 255
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 20/155 (12%)
Query: 102 HLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLR 161
+++ I +Y F+ LY ++ L +S+ ++ P L + S+
Sbjct: 187 NINAIRDYS-----FKRLYRLKVLE------ISHWPYLD---TMTPNCLYGLNLTSLSIT 232
Query: 162 GYHIFELP-DSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADM 219
++ +P ++ L YLR+LNLS I T+ S+ ++L L + L +L +
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYA 291
Query: 220 -GNLAKLHHLKNSNTKSLEEMPVGI-GRLTSLQTL 252
L L L S + L + + + +L+TL
Sbjct: 292 FRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETL 325
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 33/198 (16%)
Query: 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSI-GDLRYLR 179
+ + L L + L L+ L L + + +L LR
Sbjct: 33 ETRLLD------LGKNRIKTLNQDEFASFPHLEELE---LNENIVSAVEPGAFNNLFNLR 83
Query: 180 YLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADM-GNLAKLHHLK-NSNTKSL 236
L L ++ +P V L NL L + + ++ L M +L L L+ N L
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN--DL 140
Query: 237 EEMPVGI-GRLTSLQTL----CNF-VVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVG 290
+ L SL+ L CN + + S L L +L L LNI+ +
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL-RLRH-LNINAIR------ 192
Query: 291 DAKEAQLDGKKNLRELLL 308
+ L+ L +
Sbjct: 193 ---DYSFKRLYRLKVLEI 207
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 56/398 (14%), Positives = 112/398 (28%), Gaps = 78/398 (19%)
Query: 442 FPKLRELHILRCSKLK----GTFPEHLPALEMLVIEGCEELLVSVTSLPALCK------- 490
L L + +CS + H ++ L++E L L +
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196
Query: 491 --FISGGCKKVVWKSAAG--HPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSI 546
F K+ S L +++ + + L+ + S+
Sbjct: 197 LNFYMTEFAKI---SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSL 253
Query: 547 RQCHSLTY-IAAVQLPLSLKNL------------LIHKCDNIRTLTVEE-GIQSSSSRSG 592
+ + + P L L L IR L + +++ +
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313
Query: 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652
+ L+ + R C +L RL I + + ++ + +
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373
Query: 653 GRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVS 712
+G L+ + + + +S+ G R + + +
Sbjct: 374 AQGC-----------QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI--- 419
Query: 713 FPPKADDKRLGTALPLPASLTSLWISGFPNLERL-----SSSIVD---------LQNLAS 758
T LPL + SL + G L R + D N+
Sbjct: 420 -----------TDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467
Query: 759 LYLGDCPK----LKYFPEKGLPSSLLQLDIWGCPLIEE 792
+ LG + L F +G P +L +L++ GC E
Sbjct: 468 MLLGYVGESDEGLMEF-SRGCP-NLQKLEMRGCCFSER 503
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 57/451 (12%), Positives = 122/451 (27%), Gaps = 74/451 (16%)
Query: 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIR--TLPESVNKLYNLHSLL 205
K ++ G + EL L L + +I L +L S+
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226
Query: 206 LEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGL 265
+ D + L+ +G +L+ SL E + +L S G
Sbjct: 227 VGDFEILE----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282
Query: 266 RELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIE 325
E+ +L + L + + NL L R + G
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG--------- 333
Query: 326 KDVLNMLKPHENLE----QFCISGYGGTKFPTWFGDSSF-------SNLVTLEFENCDMC 374
+ + + + L+ + G L + D+
Sbjct: 334 --LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391
Query: 375 -TALPSVGQ-LPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIP 432
+L S+G L +L + + R +R+ D+ + L
Sbjct: 392 NESLESIGTYLKNLCDFRLVLLDREERITDL--PLDNGVRSL------------------ 431
Query: 433 LRSGQGVEGFPKLRELHILRCSKLKG-----TFPEHLPALEMLVIEGCEELLVSVTSLPA 487
+ G KLR ++ P + +++ E +
Sbjct: 432 ------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485
Query: 488 LCKFIS----GGCK---KVVWKSAAGHPGSQNSVLKKIEIRECDA-LKSLPEAWMCGTNS 539
C + GC + + + P L+ + ++ A + M
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPS-----LRYLWVQGYRASMTGQDLMQMARPYW 540
Query: 540 SLEDMSIRQCHSLTYIAAVQLPLSLKNLLIH 570
++E + R+ + ++ ++L +
Sbjct: 541 NIELIPSRRVPEVNQQGEIREMEHPAHILAY 571
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 62/494 (12%), Positives = 130/494 (26%), Gaps = 85/494 (17%)
Query: 175 LRYLRYLNLSGTEI-----RTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229
LR L+ ++ + L ++ +L +L L+ C G L+ + H +
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARAD--DLETLKLDKCSGFT----TDGLLSIVTHCR 164
Query: 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDV 289
T +EE L L + L L+ +++ +
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELA------------QHNTSLEVLN--FYMTEFAKISPK 210
Query: 290 GDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGT 349
E ++L + + + K NLE+FC
Sbjct: 211 DL--ETIARNCRSLVSVKVGDFEILELVG------------FFKAAANLEEFCGGSLNED 256
Query: 350 KFPTWFGDSSFSNLVTLEFENCDMCT--ALPSVGQL-PSLKHLAVCGMSRVKRLGSEFYG 406
+ L +P + ++ L +
Sbjct: 257 -IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315
Query: 407 NDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKG-------- 458
LE L ++ L + +L+ L I R + +G
Sbjct: 316 K-----CPNLEVLETRNVIGDRGLEVL-----AQYCKQLKRLRIERGADEQGMEDEEGLV 365
Query: 459 ------TFPEHLPALEMLVIEGC----EELLVSVTSLPALCKFISGGCKKVVWKSAAGHP 508
+ LE + + E L T L LC F + +
Sbjct: 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425
Query: 509 GSQNSVLKKIEIRECDALKSLPEAWMCG--TNSSLEDMSIRQCHSLTYIAAVQLPLSLKN 566
S+L C L+ G T+ L + + ++ ++ + S +
Sbjct: 426 NGVRSLL-----IGCKKLRRFAFYLRQGGLTDLGLSYIG-QYSPNVRWMLLGYVGESDEG 479
Query: 567 L--LIHKCDNIRTLTVEE-GIQSSSSRSGLHNLRQLQEISIRRCG---NLVSFPEGGLPC 620
L C N++ L + + + + L L+ + ++ + P
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539
Query: 621 AKLTRLEISSCKRL 634
+ + +
Sbjct: 540 WNIELIPSRRVPEV 553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 35/254 (13%), Positives = 68/254 (26%), Gaps = 48/254 (18%)
Query: 523 CDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE 582
LKS+ M ++ L+ ++ + L+ L + KC T +
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARAD------------DLETLKLDKCSGFTT----D 154
Query: 583 GIQSSSSRSGLHNLRQLQEISIRRCGN-------LVSFPEGGLPCAKLTRLEISSCK--- 632
G+ S + + R+++ + + L + L L +
Sbjct: 155 GLLSIVT-----HCRKIKTLLMEESSFSEKDGKWLHELAQH---NTSLEVLNFYMTEFAK 206
Query: 633 -RLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRG 691
+ L N SL + +G L + NL+ I
Sbjct: 207 ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS----LNEDIGMPEK 262
Query: 692 FHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNL-ERLSSSI 750
+ R+L + + P A + L + E + I
Sbjct: 263 YMNLVFPRKLCRLGLSY--------MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314
Query: 751 VDLQNLASLYLGDC 764
NL L +
Sbjct: 315 QKCPNLEVLETRNV 328
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 56/326 (17%), Positives = 100/326 (30%), Gaps = 51/326 (15%)
Query: 97 SENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLR 156
+L + + ++ +L F +L+ Y L KL RL
Sbjct: 219 CRSLVSVK--VGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL- 275
Query: 157 AFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRT--LPESVNKLYNLHSLLLEDCDRLKK 214
L E+P +R L+L + T + K NL L + +
Sbjct: 276 --GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333
Query: 215 LCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLT------------SLQTL---CNFVVGK 259
L +L L+ + M G ++ L+ + + + +
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393
Query: 260 GSGSGLRELKLLTHLHGTLNISKLENVKDVG--DAKEAQLDGKKNLRELLLRWTLSTDGS 317
S LK L + + + E + D+ + + L G K LR
Sbjct: 394 SLESIGTYLKNLCDFR-LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF--------- 443
Query: 318 SSREAEIEKDVLNMLKPH-ENLEQFCISGYGGTKFPTWFGDSSF-------SNLVTLEFE 369
R+ + L+ + + N+ + G + D NL LE
Sbjct: 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-------DEGLMEFSRGCPNLQKLEMR 496
Query: 370 NCDMCTA--LPSVGQLPSLKHLAVCG 393
C +V +LPSL++L V G
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQG 522
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Query: 144 SILPKLFK-LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNL 201
+I F L+ L H+ ELP + L L+ L LS + L + + +L
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327
Query: 202 HSLLLEDCDRLKKLCADM-GNLAKLHHLK--NSNTKSLEEMPVGIGRLTSLQTL 252
L ++ + +L NL L L + + ++ + + + L+ LQ+L
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 112/651 (17%), Positives = 205/651 (31%), Gaps = 123/651 (18%)
Query: 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKK 214
+ ++ + E+P ++ L S + T+ + ++L NL L L C ++
Sbjct: 15 KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYW 71
Query: 215 LCADM-GNLAKLHHLKNSNTKSLEEMPVGI-GRLTSLQTLCNFVVGKGSGSGLRELKLLT 272
+ D + +L L + L M +L+ L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL-------------------- 110
Query: 273 HLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNML 332
T IS ++ L +K L L L S+ + I+
Sbjct: 111 FFIQT-GISSIDF---------IPLHNQKTLESLYL--------GSNHISSIKLPKGFPT 152
Query: 333 KPHENLEQFCISGYGGTKF-PTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAV 391
+ L+ + ++L D+ P + L
Sbjct: 153 E---KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209
Query: 392 CGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHIL 451
G + + L FEDM + + I +G+ + ++ L
Sbjct: 210 GGT----QNLLVIFKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGL-CEMSVESIN-L 261
Query: 452 RCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQ 511
+ L +EL ++ T L L + G
Sbjct: 262 QKHYFFNISSNTFHCFSGL-----QELDLTATHLSELPSGLVG----------------- 299
Query: 512 NSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHK 571
S LKK+ + ++L + SL +SI+ + L+NL
Sbjct: 300 LSTLKKLVLSAN-KFENLCQI-SASNFPSLTHLSIKGNTKRLEL----GTGCLENL---- 349
Query: 572 CDNIRTLTVEE-GIQSSSSRSG-LHNLRQLQEISIRRCGNLVSFPEGGL-PCAKLTRLEI 628
+N+R L + I++S + L NL LQ +++ +S C +L L++
Sbjct: 350 -ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDL 407
Query: 629 SSCKRLEALPKG--LHNLTSLQELTIGRGVELPSLKED---GLPTNLQSLTIEGNMEIWK 683
+ RL+ NL L+ L + L E GLP LQ L ++GN
Sbjct: 408 AFT-RLKVKDAQSPFQNLHLLKVLNLS-HSLLDISSEQLFDGLP-ALQHLNLQGNHFPKG 464
Query: 684 SMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNL 743
++ + L L + C D+ S A + + +S N
Sbjct: 465 NIQKTN-SLQTLGRLEILVLSFC--DLSSIDQH--------AFTSLKMMNHVDLSH--N- 510
Query: 744 ERLSSSIVD-LQNLASLYLGDCP--KLKYFPEKGLP--SSLLQLDIWGCPL 789
RL+SS ++ L +L +YL + + LP S +++ PL
Sbjct: 511 -RLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPL 559
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 22/175 (12%)
Query: 144 SILPKLFK-LQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESV-NKLYN 200
+I F L L L + +P+ L L+ L L I ++P N++ +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 201 LHSLLLEDCDRLKKLCADM-GNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC---NF- 255
L L L + RL + L+ L +L + L E+P + L L L N
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHL 219
Query: 256 -VVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309
+ GS GL L+ L + + I +E D ++L E+ L
Sbjct: 220 SAIRPGSFQGLMHLQKL-WMIQS-QIQVIE---------RNAFDNLQSLVEINLA 263
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 89/526 (16%), Positives = 171/526 (32%), Gaps = 103/526 (19%)
Query: 169 PDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 227
I L LR L LS IR+L V +L L + +RL+ + +A L H
Sbjct: 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV-SHNRLQNI--SCCPMASLRH 125
Query: 228 LKNSNTKSLEEMPVG--IGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLEN 285
L S + +PV G LT L L S + R+L LL H L+ L+
Sbjct: 126 LDLSFND-FDVLPVCKEFGNLTKLTFLGL------SAAKFRQLDLLPVAHLHLSCILLDL 178
Query: 286 VKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISG 345
V K + + + +L + S + + + L L+ N++ +
Sbjct: 179 VSY--HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENC 235
Query: 346 YGGTKFPTWFGDSSFSNLVTLEFENCDM----CTALPSVGQLPSLKHLAVCGMSRVKRLG 401
F + L+ + ++ + L +++L + ++ +R+
Sbjct: 236 QRLMTFLSELTRGP--TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293
Query: 402 SEFYGN-DSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTF 460
E + ++ + L +E ++ + ++ + + E++I S
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEAL----------YSVFAEMNIKMLSI----- 338
Query: 461 PEHLPALEMLVIEGC---EELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKK 517
P + M+ L + + GC K +N
Sbjct: 339 -SDTPFIHMVCPPSPSSFTFLNFTQNVFTDS---VFQGCST--LKRLQTLILQRNG---- 388
Query: 518 IEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAA---VQLPLSLKNLLIHKCDN 574
LK+ + + N S + +SL A S+ L +
Sbjct: 389 --------LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS---- 436
Query: 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL 634
N L R LP K+ L++ + + +
Sbjct: 437 -------------------SN--MLTGSVFRC-----------LP-PKVKVLDLHNNR-I 462
Query: 635 EALPKGLHNLTSLQELTIG--RGVELPSLKEDGLPTNLQSLTIEGN 678
++PK + +L +LQEL + + +P D L +LQ + + N
Sbjct: 463 MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT-SLQYIWLHDN 507
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 96/568 (16%), Positives = 170/568 (29%), Gaps = 154/568 (27%)
Query: 145 ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEI-RTLPESVNKLYNLHS 203
I P+ L+ ++ E+P +++ + +E R P + +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 204 LLLEDCD------------RLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQT 251
L DC L L +L L N SL E+P L SL
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCN----SLTELPELPQSLKSLLV 118
Query: 252 LCNFVVGKGSGSGLREL-KLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRW 310
N + L +L LL +L ++ ++LE + ++ ++ L+ + +
Sbjct: 119 DNN------NLKALSDLPPLLEYLG--VSNNQLEKLPELQNS--------SFLKIIDVDN 162
Query: 311 TLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFEN 370
N L K P +L + N
Sbjct: 163 -------------------NSL----------------KKLP-----DLPPSLEFIAAGN 182
Query: 371 CDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGND-SPIPFLC--LETLRFEDMQEW 427
+ LP + LP L + N +P L LE++ +
Sbjct: 183 NQL-EELPELQNLPFLTAI-------------YADNNSLKKLPDLPLSLESIVAGNNI-- 226
Query: 428 EDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGC-----EELLVSV 482
L ++ P L ++ + LK T P+ P+LE L + EL S+
Sbjct: 227 -----LEELPELQNLPFLTTIY-ADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSL 279
Query: 483 TSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLE 542
T L S + P + L + + ++SL + SLE
Sbjct: 280 TFLDVSENIFS---------GLSELPPN----LYYLNASSNE-IRSLCDLP-----PSLE 320
Query: 543 DMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLR----Q 598
++++ L +LP L V E Q+ L L
Sbjct: 321 ELNVSNNK-LI-----ELPALPPRLERLIASFNHLAEVPELPQN------LKQLHVEYNP 368
Query: 599 LQEI--------SIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQEL 650
L+E +R +L PE L +L + + L P ++ L+ +
Sbjct: 369 LREFPDIPESVEDLRMNSHLAEVPEL---PQNLKQLHVETN-PLREFPDIPESVEDLR-M 423
Query: 651 TIGRGVELPSLKEDGLPTNLQSLTIEGN 678
R V+ + L+ E +
Sbjct: 424 NSERVVDPYEFAHETTD-KLEDDVFEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 19/125 (15%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLY---- 199
LP+L L L + LPD L L + T++ LP+S+ L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287
Query: 200 ----------NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSL 249
NL+ L ++ LC +L +L+ N L E+P RL L
Sbjct: 288 IFSGLSELPPNLYYLNASSN-EIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERL 342
Query: 250 QTLCN 254
N
Sbjct: 343 IASFN 347
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 203
S+ L+ L + ELP+ L+ L N + + LP L
Sbjct: 85 SLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP------LLEY 135
Query: 204 LLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCN 254
L + + +L+KL ++ N + L + N L+++P L + N
Sbjct: 136 LGVSNN-QLEKL-PELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNN 183
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 39/231 (16%), Positives = 60/231 (25%), Gaps = 58/231 (25%)
Query: 563 SLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNL--RQLQEISIRRCGNLVSFPEGGLPC 620
S + R G Q + S L + RQ E+ + L S PE
Sbjct: 35 SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL---P 90
Query: 621 AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNME 680
L L S L LP+ +L SL L L P L+ L + N
Sbjct: 91 PHLESLVASCNS-LTELPELPQSLKSLLVDNN-NLKALSDL-----PPLLEYLGVSNNQ- 142
Query: 681 IWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740
+ L+ + L + +
Sbjct: 143 -----------LEKLPELQNSS----------------------------FLKIIDVDN- 162
Query: 741 PNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIE 791
N L +L + G+ +L+ PE L + L +
Sbjct: 163 -N--SLKKLPDLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSLKK 209
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 45/205 (21%)
Query: 90 VNKQQSFSENLRH--LSYIP-EYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAY--- 143
+N S S+N + +S +Y ++E R L +
Sbjct: 7 INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66
Query: 144 -----SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYL-----------------RYL 181
S LP ++ + + LP+ L YL ++L
Sbjct: 67 NRLNLSSLPDNL-PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHL 125
Query: 182 NLSGTEIRTLPESVNKLYNLH------SLLLEDCDRLKKLCADMGN--------LAKLHH 227
++ ++ LPE L ++ ++L E L+ L N L
Sbjct: 126 DVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVR-NNQLTFLPELPESLEA 184
Query: 228 LKNSNTKSLEEMPVGIGRLTSLQTL 252
L S LE +P R +
Sbjct: 185 LDVSTNL-LESLPAVPVRNHHSEET 208
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 105/676 (15%), Positives = 214/676 (31%), Gaps = 99/676 (14%)
Query: 154 RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRL 212
+ ++PD + + LNL+ ++R L + + L SL + +
Sbjct: 5 SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TI 61
Query: 213 KKLCADM-GNLAKLHHLK-NSNTKSLEEMPVG-IGRLTSLQTL---CNFVVGKGSGSGLR 266
KL ++ L L L N L ++ T+L L N + +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHN--ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FV 118
Query: 267 ELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEK 326
+ K L L L+ + L + K +NL+ELLL S+++ ++
Sbjct: 119 KQKNLITLD--LSHNGLSSTKL------GTQVQLENLQELLL--------SNNKIQALKS 162
Query: 327 DVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLE-------FENCDMCTALPS 379
+ L++ +L++ +S +F F + L + L
Sbjct: 163 EELDIFAN-SSLKKLELSSNQIKEFS----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217
Query: 380 VGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGV 439
S+++L++ + F G + L L + +
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGL----KWTNLTMLDLSYNN-----LNVVGNDSF 268
Query: 440 EGFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEG-CEELLVSVTSLPALCKFISGG 495
P+L L + ++ F L + L ++ + +S+ SLP + F
Sbjct: 269 AWLPQLEYFF-LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 496 CKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYI 555
K + + N + I+ L +L + + +SL ++ SL +
Sbjct: 328 LKCLEHLNM-----EDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 556 AAVQLPLS------LKNLLIHKCDNIRTLTVEE-GIQSSSSRSGLHNLRQLQEISIRRCG 608
L L+ +++ ++ L + I + L + EI +
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN- 440
Query: 609 NLVSFPEGGL-PCAKLTRLEISSCK--RLEALPKGLHNLTSLQELTIG--RGVELPSLKE 663
+ L RL + +++ P L +L L + +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500
Query: 664 DGLPTNLQSLTIEGNM--EIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKR 721
+GL L+ L ++ N +WK G + L L I+N + + P
Sbjct: 501 EGLE-KLEILDLQHNNLARLWKHANP-GGPIYFLKGLSHLHILNLESNGFDEIPV----- 553
Query: 722 LGTALPLPASLTSL-----WISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPE---K 773
L + ++ P +S + +L SL L + +
Sbjct: 554 --EVFKDLFELKIIDLGLNNLNTLP-----ASVFNNQVSLKSLNLQKN-LITSVEKKVFG 605
Query: 774 GLPSSLLQLDIWGCPL 789
+L +LD+ P
Sbjct: 606 PAFRNLTELDMRFNPF 621
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 203
S + L L ++ + +L H + ++ L YL ++ ++++ + + L +L+S
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181
Query: 204 LLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL---CNFVVGKG 260
L L +++ + + +L LH+ + + ++ + +T L +L N +
Sbjct: 182 LSLNYN-QIEDISP-LASLTSLHYFTAYVNQ-ITDIT-PVANMTRLNSLKIGNNKITDL- 236
Query: 261 SGSGLRELKLLTHLHGTLN-ISKLENVKD 288
S L L LT L N IS + VKD
Sbjct: 237 --SPLANLSQLTWLEIGTNQISDINAVKD 263
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 26/145 (17%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLL 205
+ L L+ + ++ + +L + L ++G ++ ++ + L NL L
Sbjct: 15 IFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLN 72
Query: 206 LEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC---NFVVGKGSG 262
L ++ + + + NL KL +L K + ++ + LT+L+ L + +
Sbjct: 73 LNGN-QITDI-SPLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDNISDISPL 128
Query: 263 SGLRELKLLTHLHGTLNISKLENVK 287
+ L ++ L +L N+S L +
Sbjct: 129 ANLTKMYSL-NLGANHNLSDLSPLS 152
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 9e-06
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDL 175
+ + + LS + + Y K+ +L+RL + + L +
Sbjct: 250 LLNYPGLVEV------DLSYNELEKIMYHPFVKMQRLERLY---ISNNRLVALNLYGQPI 300
Query: 176 RYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229
L+ L+LS + + + + L +L L+ + L + L +L
Sbjct: 301 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTL--KLSTHHTLKNLT 351
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 102 HLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLR 161
H+ + D FED+ + + + VT NS+ L ++L +++ L L
Sbjct: 33 HIDMQTQ--DVYFGFEDI-TLNNQKI---VTFKNSTMRKLPAALLDSFRQVELLN---LN 83
Query: 162 GYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADM 219
I E+ ++ L + IR LP V + L L+LE L L +
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 142
Query: 220 -GNLAKLHHLKNSNTKSLEEMPVGIGR-LTSLQTL 252
N KL L SN LE + + TSLQ L
Sbjct: 143 FHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNL 176
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 22/175 (12%)
Query: 144 SILPKLFK-LQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLPESV-NKLYN 200
I F L L L + +P + L LR L L I ++P N++ +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Query: 201 LHSLLLEDCDRLKKLCADM-GNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC---NF- 255
L L L + +L+ + L L +L +++MP + L L+ L N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHF 230
Query: 256 -VVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309
+ GS GL LK L + + +S +E DG +L EL L
Sbjct: 231 PEIRPGSFHGLSSLKKL-WVMNS-QVSLIE---------RNAFDGLASLVELNLA 274
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 27/172 (15%)
Query: 539 SSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQ 598
L + I + +T I LP SL L + I + + L L
Sbjct: 171 KKLSYIRIADTN-ITTIPQ-GLPPSLTELHLDGN-KITKV----------DAASLKGLNN 217
Query: 599 LQEISIRRCGNLVSFPEGGL-PCAKLTRLEISSCKRLEALPKGLHNLTSLQEL------- 650
L ++ + ++ + G L L L +++ K L +P GL + +Q +
Sbjct: 218 LAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI 275
Query: 651 -TIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQL 701
IG P + +++ N + I+ F +
Sbjct: 276 SAIGSNDFCPPGYNTKKA-SYSGVSLFSN-PVQYWEIQPS-TFRCVYVRAAV 324
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 21/163 (12%)
Query: 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCD 210
++ L +L ++ +L I ++ L ++ ++ L NL L + D
Sbjct: 42 QMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99
Query: 211 RLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL----CNFVVGKGSGSGLR 266
++ L L L S++ + + I L + ++ + L+
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI---TDIMPLK 156
Query: 267 ELKLLTHLHGTLN-ISKLENVKDVGDAKEAQLDGKKNLRELLL 308
L L L+ + + ++ L +L
Sbjct: 157 TLPELKSLNIQFDGVHDYRG-----------IEDFPKLNQLYA 188
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 10/138 (7%)
Query: 171 SIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230
+ + L Y+ L+ + L + +N+ L + + + L+ L L+
Sbjct: 39 TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRI 95
Query: 231 SNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVG 290
+ + LTSL L + S L ++ L ++ ++++S + D+
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLL-DISHSAHDDSILTKINTLPKVN-SIDLSYNGAITDI- 152
Query: 291 DAKEAQLDGKKNLRELLL 308
L L+ L +
Sbjct: 153 ----MPLKTLPELKSLNI 166
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 23/175 (13%)
Query: 538 NSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR----SGL 593
SS +++ Q +SLTY ++L N+ + I + + ++ + +
Sbjct: 32 QSSTANITEAQMNSLTY-------ITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPI 84
Query: 594 HNLRQLQEISIRRCGNLVSFPE--GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELT 651
L L+ + I GL LT L+IS +++ ++ L + +
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGLT--SLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 652 IGRGVELPSLKE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705
+ + + L L+SL I+ + + RG F L QL +
Sbjct: 143 LSYNGAITDIMPLKTL-PELKSLNIQFD------GVHDYRGIEDFPKLNQLYAFS 190
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDL 175
+ + + LS + + Y K+ +L+RL + + L +
Sbjct: 244 LLNYPGLVEVD------LSYNELEKIMYHPFVKMQRLERLY---ISNNRLVALNLYGQPI 294
Query: 176 RYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229
L+ L+LS + + + + L +L L+ + L + L +L
Sbjct: 295 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTL--KLSTHHTLKNLT 345
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 102 HLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLR 161
H+ + D FED+ + + + VT NS+ L ++L +++ L L
Sbjct: 27 HIDMQTQ--DVYFGFEDI-TLNNQKI---VTFKNSTMRKLPAALLDSFRQVELLN---LN 77
Query: 162 GYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADM 219
I E+ ++ L + IR LP V + L L+LE L L +
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 136
Query: 220 -GNLAKLHHLKNSNTKSLEEMPVGIGR-LTSLQTL 252
N KL L SN LE + + TSLQ L
Sbjct: 137 FHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNL 170
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 593 LHNLRQLQEISIRRCGN-LVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELT 651
+++L+ + I N LV+ G P L L++S L + + L+ L
Sbjct: 268 FVKMQRLERLYIS--NNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 324
Query: 652 IGRGVELPSLKEDGLPTNLQSLTIEGN 678
+ + +LK L++LT+ N
Sbjct: 325 L-DHNSIVTLKLSTHH-TLKNLTLSHN 349
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLH 202
+ L L L L + LP L L L++S + +LP L L
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 203 SLLLEDCDRLKKLCADM-GNLAKLHHLKNSNTKSLEEMPVGI-GRLTSLQTL 252
L L+ + LK L + KL L +N L E+P G+ L +L TL
Sbjct: 128 ELYLKG-NELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTL 177
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 42/199 (21%), Positives = 64/199 (32%), Gaps = 29/199 (14%)
Query: 593 LHNLRQLQEISIRRCGNLVSFPEG---GLPCAKLTRLEISSCKRLEALPKG-LHNLTSLQ 648
L++I I + L LP KL + I L + NL +LQ
Sbjct: 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRIEKANNLLYINPEAFQNLPNLQ 107
Query: 649 ELTIGRG--VELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLR-QLTIIN 705
L I LP + + L I+ N+ I IER F L + I+
Sbjct: 108 YLLISNTGIKHLPDVHKIHSL-QKVLLDIQDNINI--HTIERN----SFVGLSFESVILW 160
Query: 706 CDD-DMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSI-VDLQNLASLYLGD 763
+ + A + L L +S NLE L + + L +
Sbjct: 161 LNKNGIQEIHNSAFN---------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 764 CPKLKYFPEKGLPSSLLQL 782
+ P GL +L +L
Sbjct: 212 TR-IHSLPSYGL-ENLKKL 228
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 47/259 (18%), Positives = 84/259 (32%), Gaps = 44/259 (16%)
Query: 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDRLKK 214
R F + + E+P + R L T++R + + + +L + + D L+
Sbjct: 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 215 LCADM-GNLAKLHHLKNSNTKSLEEMPVGI-GRLTSLQTL--CN---FVVGKGSGSGLRE 267
+ AD+ NL KLH ++ +L + L +LQ L N + +
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129
Query: 268 LKLLTHLHGTLNISKLENVKDVGDAKEAQLDG-KKNLRELLLRW-------TLSTDGSSS 319
LL + +NI +E G L L + +G+
Sbjct: 130 KVLL-DIQDNINIHTIE---------RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179
Query: 320 RE---------AEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFEN 370
E E+ DV + IS P++ NL L +
Sbjct: 180 DELNLSDNNNLEELPNDVFHGAS---GPVILDISRTRIHSLPSY----GLENLKKLRARS 232
Query: 371 CDMCTALPSVGQLPSLKHL 389
LP++ +L +L
Sbjct: 233 TYNLKKLPTLEKLVALMEA 251
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 45/215 (20%)
Query: 443 PKLRELHILRCSKLK----GTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKK 498
PKL E+ I + + L F ++LP L+ L+I + LP + K
Sbjct: 79 PKLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNTG-----IKHLPDVHKI------- 125
Query: 499 VVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYI-AA 557
+ ++I++ + ++ G + + + + + I +
Sbjct: 126 ------------HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS 172
Query: 558 VQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGG 617
L L + +N+ L H + I R + S P G
Sbjct: 173 AFNGTQLDELNLSDNNNLEEL----------PNDVFHGASGPVILDISRT-RIHSLPSYG 221
Query: 618 LPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652
L L +L S L+ LP L L +L E ++
Sbjct: 222 L--ENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 38/179 (21%)
Query: 584 IQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEG---GLPCAKLTRLEISSCKRLEALPKG 640
+ + L L + + +L +P L L++SS L L +
Sbjct: 51 LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVP--NLRYLDLSSNH-LHTLDEF 106
Query: 641 -LHNLTSLQELTIGRGVELPSLKE---DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFS 696
+L +L+ L + + + + + LQ L + N +I S +
Sbjct: 107 LFSDLQALEVLLLYNN-HIVVVDRNAFEDM-AQLQKLYLSQN-QI--SRFPVE-LIKDGN 160
Query: 697 SLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQN 755
L +L +++ + L L ++ L + + L N
Sbjct: 161 KLPKLMLLDLSSNK---------------------LKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 91/594 (15%), Positives = 182/594 (30%), Gaps = 97/594 (16%)
Query: 144 SILPKLFK-LQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYN 200
+ F L+ L I + + L +L L L+G I++ + L +
Sbjct: 46 ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105
Query: 201 LHSLLLEDCDRLKKLCADM-GNLAKLHHLKNSNTKSLEEMPVG--IGRLTSLQTL--CNF 255
L +L+ + +L L + G L L L ++ + + LT+L +
Sbjct: 106 LENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN 163
Query: 256 VVGKGSGSGLRELKLLTHLHGTLNIS--KLENVKDVGDAKEAQLDGKKNLRELLLRWTLS 313
+ + + L+ L+ ++ +L++S ++ + + Q L EL LR
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI-------QDQAFQGIKLHELTLR---- 212
Query: 314 TDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDM 373
+ + I K L L ++ + + + + F S L + + +
Sbjct: 213 ---GNFNSSNIMKTCLQNL-AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268
Query: 374 CTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGN-----DSPIPFLCLETLRFEDMQEWE 428
+ S + ++ V + G + ++L Q
Sbjct: 269 -----TYTNDFSDDIVKFHCLANVSAM--SLAGVSIKYLEDVPKHFKWQSLSIIRCQ--- 318
Query: 429 DWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPE-HLPALEMLVIEGCEELLVSVTSLPA 487
L+ P L+ L L +K +F + LP+L L + +++
Sbjct: 319 ----LKQFPT-LDLPFLKSLT-LTMNKGSISFKKVALPSLSYLDLSRN-----ALSFSGC 367
Query: 488 LCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIR 547
C + G L+ +++ + +M L+ + +
Sbjct: 368 -CSYSDLGTNS----------------LRHLDLSFNG-AIIMSANFMG--LEELQHLDFQ 407
Query: 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRC 607
L + LSL+ L L + L L + +
Sbjct: 408 HST-LKRVTEFSAFLSLEKL--------LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458
Query: 608 GNLVSFPEGGL-PCAKLTRLEISSCKRLEALPKG-LHNLTSLQELTIGRGVELPSLKEDG 665
+ LT L++S C+ LE + G L LQ L + L L
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNM-SHNNLLFLDSSH 516
Query: 666 LP--TNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTI----INCDDDMVSF 713
+L +L N I + H SL + + C + F
Sbjct: 517 YNQLYSLSTLDCSFN-RI--ETSKGI-LQHFPKSLAFFNLTNNSVACICEHQKF 566
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 8/138 (5%)
Query: 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGD 174
++L + R L + SI+ L + F L + F
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHC 283
Query: 175 LRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 234
L + ++L+G I+ L + + SL + C +LK+ +L L L + K
Sbjct: 284 LANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRC-QLKQFPT--LDLPFLKSLTLTMNK 339
Query: 235 SLEEMPVGIGRLTSLQTL 252
L SL L
Sbjct: 340 GSI--SFKKVALPSLSYL 355
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 77/559 (13%), Positives = 152/559 (27%), Gaps = 109/559 (19%)
Query: 174 DLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNT 233
+ R + + + + + + S+ L+ AD +
Sbjct: 41 ERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHF----ADFNLVPDGWG--GYVY 94
Query: 234 KSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLREL-KLLTHLHGTLNISKLENVKDVGDA 292
+E M L + L VV + L + K + L +S E G
Sbjct: 95 PWIEAMSSSYTWLEEI-RLKRMVV---TDDCLELIAKSFKNFK-VLVLSSCEGFSTDG-- 147
Query: 293 KEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFP 352
A +NL+EL LR + D S + + + +L IS
Sbjct: 148 LAAIAATCRNLKELDLRESDVDDVSG-------HWLSHFPDTYTSLVSLNISCLASE--- 197
Query: 353 TWFGDSSFS-------NLVTLEFENCDMCTALPSVGQ-LPSLKHLAVCGMSRVKRLGSEF 404
S+ NL +L+ L ++ Q P L+ L G + R
Sbjct: 198 --VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY- 254
Query: 405 YGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPE-- 462
+ + + LR L + +L L++ + +
Sbjct: 255 --SGLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCSRLTTLNLSYATVQSYDLVKLL 310
Query: 463 -HLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIR 521
P L+ L + + L L CK L+++ +
Sbjct: 311 CQCPKLQRLWVLDY----IEDAGLEVLAS----TCKD----------------LRELRVF 346
Query: 522 ECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVE 581
+ P + T L +S C L +++ C +
Sbjct: 347 PSEPFVMEPNVAL--TEQGLVSVS-MGCPKLES-------------VLYFCRQMT----N 386
Query: 582 EGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLP-----------CAKLTRLEISS 630
+ + + N + + P C L RL +S
Sbjct: 387 AALITIA-----RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441
Query: 631 CKRLEALPKGLHNLTSLQELTIGR-GVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIE 687
+ ++ L++ G + G +L+ L I K+++
Sbjct: 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD-SLRKLEIRDCPFGDKALLA 500
Query: 688 RGRGFHRFSSLRQLTIINC 706
+ ++R L + +C
Sbjct: 501 ---NASKLETMRSLWMSSC 516
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLL 205
L L +L + L + LP ++ LR L L S + + V L L LL
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELL 514
Query: 206 LEDCDRLKKLCADMGNLAKLHHLK 229
L + RL++ A + L L
Sbjct: 515 LCNN-RLQQS-AAIQPLVSCPRLV 536
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 151 KLQRLRAFSLRGYHI---FELPDSIGDLRYLRYLNLSGT-----EIRTLPESVNKLYNLH 202
+ R+ L G ++ + +P S+ +L YL +L + G I P ++ KL LH
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI---PPAIAKLTQLH 104
Query: 203 SLLLEDCDRLKKLC----ADMGNLAKLHHLK-NSNTKSLE-EMPVGIGRLTSLQTL 252
L + + + + L L + N +L +P I L +L +
Sbjct: 105 YLYITHT----NVSGAIPDFLSQIKTLVTLDFSYN--ALSGTLPPSISSLPNLVGI 154
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 43/271 (15%), Positives = 68/271 (25%), Gaps = 35/271 (12%)
Query: 144 SILPKLF-KLQRLRAFSLRGYHIFEL--PDSIGDLRYLRYLNLSGTEIRTLPESV-NKLY 199
+ F +LQ L+ + + ++ L L L L + L N L
Sbjct: 44 ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103
Query: 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLK----NSNT-KSLEEMPVGI-GRLTSLQTL- 252
NL L L C L L L+ N K ++ P + L
Sbjct: 104 NLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ--PASFFLNMRRFHVLD 160
Query: 253 ---------CNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNL 303
C + G L+L + +N L K ++
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC------GNPFKNTSI 214
Query: 304 RELLL---RWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSF 360
L L + S K +L N+ F
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274
Query: 361 SNLVTLEFENCDMCTALPSV--GQLPSLKHL 389
S + T + + AL L+ L
Sbjct: 275 SGVKTCDLSKSKI-FALLKSVFSHFTDLEQL 304
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 144 SILPKLFKLQRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTEIR-TLPESVNKLYNL 201
+I L L +LR L + E+P + ++ L L L ++ +P ++ NL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 202 HSLLLEDCDRLK-KLCADMGNLAKLHHLK-NSNTKSLE-EMPVGIGRLTSLQTL 252
+ + L + RL ++ +G L L LK ++N S +P +G SL L
Sbjct: 493 NWISLSNN-RLTGEIPKWIGRLENLAILKLSNN--SFSGNIPAELGDCRSLIWL 543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 29/114 (25%)
Query: 593 LHNLRQLQEISIRRCGNLVSFPEGGL-PCAKLTRLEISSCKRLEALPKG-LHNLTSLQEL 650
+ L L+ + + +F LT L++S C +LE L ++L+SLQ L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVL 204
Query: 651 --------TIGRGV--ELPSLKE----------------DGLPTNLQSLTIEGN 678
++ L SL+ P++L L + N
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 46/266 (17%), Positives = 76/266 (28%), Gaps = 67/266 (25%)
Query: 560 LPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQ----EISIRRCGNLVSFPE 615
+P S L + +++L L L +L +S + C + F
Sbjct: 26 IPSSATRLELESN-KLQSL-------PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-- 75
Query: 616 GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR---------GV--ELPSLKE- 663
G L L++S + + L L+ L V L +L
Sbjct: 76 -GTT--SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131
Query: 664 ---------------DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDD 708
+GL +L+ L + GN F +L L + C
Sbjct: 132 DISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQ--ENFLPD-IFTELRNLTFLDLSQC-- 185
Query: 709 DMVSFPPKADDKRLGTALPLPASLTSLWISGFPN-LERLSSSI-VDLQNLASLYLGDCPK 766
+ P L SL L +S N L + L +L L
Sbjct: 186 QLEQLSP-------TAFNSLS-SLQVLNMSH--NNFFSLDTFPYKCLNSLQVLDYSLN-H 234
Query: 767 LKYFPE---KGLPSSLLQLDIWGCPL 789
+ + + PSSL L++
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 175 LRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM--GNLAKLHHLKNSN 232
L+YL+LS + T+ + L L L + LK++ +L L +L S+
Sbjct: 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 135
Query: 233 TKSLEEMPVGI-GRLTSLQTLC---NFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKD 288
T GI L+SL+ L N EL+ LT L L+ +LE +
Sbjct: 136 TH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD--LSQCQLEQL-- 190
Query: 289 VGDAKEAQLDGKKNLRELLLR 309
+ +L+ L +
Sbjct: 191 ----SPTAFNSLSSLQVLNMS 207
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 24/167 (14%)
Query: 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLL 205
+ + L L L+ I +L + +L + L LSG ++ + ++ L ++ +L
Sbjct: 56 IEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLD 113
Query: 206 LEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL---CNFVVGKGSG 262
L ++ + + L+ L L + + + + LT+LQ L V
Sbjct: 114 LTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVS---DL 166
Query: 263 SGLRELKLLTHLHGTLN-ISKLENVKDVGDAKEAQLDGKKNLRELLL 308
+ L L LT L N IS + L NL E+ L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-----------LASLPNLIEVHL 202
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 8e-04
Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 24/187 (12%)
Query: 98 ENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRA 157
L + I +K + + + ++ + L+ + + L L L L
Sbjct: 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTK---LFLNGNKLTDI--KPLTNLKNLGWL-- 92
Query: 158 FSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCA 217
L I +L S+ DL+ L+ L+L I + + L L SL L + ++ +
Sbjct: 93 -FLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KITDI-T 147
Query: 218 DMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL---CNFVVGKGSGSGLRELKLLTHL 274
+ L KL L + + + ++ + LT LQ L N + S LR L L +L
Sbjct: 148 VLSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHI------SDLRALAGLKNL 199
Query: 275 HGTLNIS 281
L +
Sbjct: 200 D-VLELF 205
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 815 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.98 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.98 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.96 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.96 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.95 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.93 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.92 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.89 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.89 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.88 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.86 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.86 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.86 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.83 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.83 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.83 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.83 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.83 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.82 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.82 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.81 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.81 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.8 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.8 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.8 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.79 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.78 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.78 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.78 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.77 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.76 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.76 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.75 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.75 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.74 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.71 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.71 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.71 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.7 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.69 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.69 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.69 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.69 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.68 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.68 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.68 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.67 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.67 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.67 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.64 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.64 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.62 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.62 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.61 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.59 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.58 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.56 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.56 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.52 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.5 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.49 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.49 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.49 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.49 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.48 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.47 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.46 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.46 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.44 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.44 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.44 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.43 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.43 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.42 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.41 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.39 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.39 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.36 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.36 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.35 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.34 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.34 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.33 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.29 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.28 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.27 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.25 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.22 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.2 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.19 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.18 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.17 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.15 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.12 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.1 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.1 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.07 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.06 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.05 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.04 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.02 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.02 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.01 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.98 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 98.97 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.84 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.71 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.7 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.67 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.66 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.37 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.36 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.08 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.08 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.05 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.99 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.96 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.94 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.93 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.92 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 97.87 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.8 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.78 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.78 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.71 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.61 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 96.91 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.49 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.25 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.12 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 91.69 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=467.66 Aligned_cols=641 Identities=14% Similarity=0.113 Sum_probs=366.6
Q ss_pred CCceeEEEeeccccccc-c-cccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcc-ccCc--c
Q 044882 97 SENLRHLSYIPEYCDGV-K-RFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPD--S 171 (815)
Q Consensus 97 ~~~~r~l~~~~~~~~~~-~-~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~ 171 (815)
...++.+.+........ . -.+.+.++++|+.+...... + ...+..+..+++|++|+|++|.+. .+|. .
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~------~-~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH------I-NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS 121 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC------E-EECCCCCCCCTTCCEEECCSSEEEEEGGGGGG
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCC------c-CCCchhhccCCCCCEEECCCCcCCCcCCChHH
Confidence 34566666554322211 0 11334455555555443321 1 234466777888888888888776 4565 7
Q ss_pred ccCCccCCEEecCCCCCC-ccchhh-hccCCCcEEeccCCccccccchh---hcCcCCcceeeccCCCcccccccccccc
Q 044882 172 IGDLRYLRYLNLSGTEIR-TLPESV-NKLYNLHSLLLEDCDRLKKLCAD---MGNLAKLHHLKNSNTKSLEEMPVGIGRL 246 (815)
Q Consensus 172 ~~~l~~L~~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~~~l~~~p~~i~~L 246 (815)
++++++|++|+|++|.+. ..|..+ +++++|++|++++|......|.. ++++++|++|++++|...+..| ++.+
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l 199 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTC
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccC
Confidence 778888888888887765 445444 67788888888887433444444 6777888888888777333222 3667
Q ss_pred cccccccceeeccCC-CCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHH
Q 044882 247 TSLQTLCNFVVGKGS-GSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIE 325 (815)
Q Consensus 247 ~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 325 (815)
++|++|+........ ...+..+++|+.| .+..- .........+..+++|+.|++++|...+.
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L----~Ls~n----~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--------- 262 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHL----DISGN----KLSGDFSRAISTCTELKLLNISSNQFVGP--------- 262 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEE----ECCSS----CCCSCHHHHTTTCSSCCEEECCSSCCEES---------
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEE----ECcCC----cCCCcccHHHhcCCCCCEEECCCCcccCc---------
Confidence 777777543322211 1113333333333 22111 11112333456666666666666654110
Q ss_pred HHHhhcCCCCCCcccEEEeecCCC-CCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCcc
Q 044882 326 KDVLNMLKPHENLEQFCISGYGGT-KFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSE 403 (815)
Q Consensus 326 ~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~ 403 (815)
... ..+++|++|+++++.+. .+|.++.. .+++|++|++++|.+.+.+| .++.+++|++|++++|.....++..
T Consensus 263 ---~~~-~~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 263 ---IPP-LPLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp ---CCC-CCCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred ---cCc-cccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence 011 14556666666666554 55665542 24666777776666655555 5666666777777666443344443
Q ss_pred ccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCC-CcceeeeccCcccccCCCCC-----CCCccEEEEecccC
Q 044882 404 FYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFP-KLRELHILRCSKLKGTFPEH-----LPALEMLVIEGCEE 477 (815)
Q Consensus 404 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~lp~~-----l~~L~~L~l~~~~~ 477 (815)
.+.. +++|+.|++.++....... ..+..++ +|+.|++++ +++.+.+|.. +++|+.|++.+|..
T Consensus 338 ~l~~-----l~~L~~L~Ls~n~l~~~~p-----~~l~~l~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 338 TLLK-----MRGLKVLDLSFNEFSGELP-----ESLTNLSASLLTLDLSS-NNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp HHTT-----CTTCCEEECCSSEEEECCC-----TTHHHHTTTCSEEECCS-SEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred HHhc-----CCCCCEEeCcCCccCcccc-----HHHHhhhcCCcEEEccC-CCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 3332 5666666666543211111 1222343 666666666 3455444422 44566666666643
Q ss_pred c---cccCCCCCCcceEEeCCCCccccccccCCCC--CCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCc
Q 044882 478 L---LVSVTSLPALCKFISGGCKKVVWKSAAGHPG--SQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSL 552 (815)
Q Consensus 478 l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 552 (815)
. ...+..+++|+.|++++|... ...+. ...++|++|++++|...+.+|..+ ..+++|+.|++++|...
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLS-----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLT 479 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEE-----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCC
T ss_pred ccccCHHHhcCCCCCEEECcCCccc-----CcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCccc
Confidence 2 233445566666666665432 11111 112456666666666555555554 45666666666666433
Q ss_pred hhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccc
Q 044882 553 TYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCK 632 (815)
Q Consensus 553 ~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 632 (815)
..++. .+.+|++|+.|++++|.+.+..|..+..+++|++|++++|.....+|..+..+++|+.|++++|+
T Consensus 480 ~~~p~----------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 480 GEIPS----------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SCCCG----------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCH----------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 22221 13455666666666666666666666666666666666666555666666666666666666666
Q ss_pred cccccccccCCCCCcCcEEecCC----------------------------------------------CCCCCCC-CCC
Q 044882 633 RLEALPKGLHNLTSLQELTIGRG----------------------------------------------VELPSLK-EDG 665 (815)
Q Consensus 633 ~~~~~~~~~~~l~~L~~L~l~~~----------------------------------------------~~~~~~~-~~~ 665 (815)
+.+.+|..+.....+..+.+..+ ..-..+| ..+
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 66666655544433333222110 0000011 123
Q ss_pred CCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcc-cCCCCccccccccCCCCCCccceEEecCCCCCc
Q 044882 666 LPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMV-SFPPKADDKRLGTALPLPASLTSLWISGFPNLE 744 (815)
Q Consensus 666 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~ 744 (815)
.+++|+.|++++|...... +..+..+++|+.|++++ +.+. .+|. .+..+++|+.|+|++|+...
T Consensus 630 ~l~~L~~LdLs~N~l~g~i----p~~l~~l~~L~~L~Ls~--N~l~g~ip~---------~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYI----PKEIGSMPYLFILNLGH--NDISGSIPD---------EVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp SSBCCCEEECCSSCCBSCC----CGGGGGCTTCCEEECCS--SCCCSCCCG---------GGGGCTTCCEEECCSSCCEE
T ss_pred ccccccEEECcCCcccccC----CHHHhccccCCEEeCcC--CccCCCCCh---------HHhCCCCCCEEECCCCcccC
Confidence 4678999999999765432 25688999999999999 4444 5654 44678999999999966666
Q ss_pred cccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCcchH----HHHhccCCCcccccccccce
Q 044882 745 RLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIE----EKCRKDGGQYWDLLTHIPDV 811 (815)
Q Consensus 745 ~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~w~~~~~i~~~ 811 (815)
.+|..+..+++|++|++++|+--..+|..+.+.++....+.|||.+. ..|....+++|++|+|+|..
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 89999999999999999997666678887777788888888877553 27999999999999999865
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=429.71 Aligned_cols=599 Identities=16% Similarity=0.077 Sum_probs=384.0
Q ss_pred CCceEEccccCCcCcCCCcccc---ccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCC-ccch--hhh
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYS---ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIR-TLPE--SVN 196 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~--~i~ 196 (815)
.+++.|.+.+.. +... +++.+..+++|++++++.+.+..+|..|+++++|++|+|++|.+. .+|. .++
T Consensus 50 ~~v~~L~L~~~~------l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKP------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSC------CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCC------cCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 578888776543 3344 778889999999999999999888899999999999999999987 6777 899
Q ss_pred ccCCCcEEeccCCccccccchhh-cCcCCcceeeccCCCcccccccc---cccccccccccceeeccCCCCCcccccccc
Q 044882 197 KLYNLHSLLLEDCDRLKKLCADM-GNLAKLHHLKNSNTKSLEEMPVG---IGRLTSLQTLCNFVVGKGSGSGLRELKLLT 272 (815)
Q Consensus 197 ~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 272 (815)
++++|++|++++|......|..+ +++++|++|++++|...+..|.. ++++++|++|+..............+++|+
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 203 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCC
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCC
Confidence 99999999999995555667665 89999999999999844455555 788999999864433222222223444444
Q ss_pred ccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCC-C
Q 044882 273 HLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTK-F 351 (815)
Q Consensus 273 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~ 351 (815)
.|. +..-.. ....+. +..+++|++|++++|... ......+..+++|+.|++++|.... +
T Consensus 204 ~L~----Ls~n~l----~~~~~~-l~~l~~L~~L~Ls~n~l~-----------~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 204 FLD----VSSNNF----STGIPF-LGDCSALQHLDISGNKLS-----------GDFSRAISTCTELKLLNISSNQFVGPI 263 (768)
T ss_dssp EEE----CCSSCC----CSCCCB-CTTCCSCCEEECCSSCCC-----------SCHHHHTTTCSSCCEEECCSSCCEESC
T ss_pred EEE----CcCCcC----CCCCcc-cccCCCCCEEECcCCcCC-----------CcccHHHhcCCCCCEEECCCCcccCcc
Confidence 332 111110 111112 666777777777776551 1233455666777777777776542 2
Q ss_pred CccCCCCCCCCccEEEEecCCCCCCCC-CCCC-CCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeecccccccc
Q 044882 352 PTWFGDSSFSNLVTLEFENCDMCTALP-SVGQ-LPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWED 429 (815)
Q Consensus 352 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 429 (815)
|.. .+++|++|++++|.+.+.+| .+.. +++|++|++++|.....++.. ++. +++|+.|++.++.....
T Consensus 264 ~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~-----l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 264 PPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGS-----CSLLESLALSSNNFSGE 333 (768)
T ss_dssp CCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGG-----CTTCCEEECCSSEEEEE
T ss_pred Ccc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-Hhc-----CCCccEEECCCCcccCc
Confidence 332 36777777777777665555 4444 377777777776433333222 222 66777777766543222
Q ss_pred ccccCCCCCcccCCCcceeeeccCcccccCCCCCC---C-CccEEEEecccCcc---ccCCC--CCCcceEEeCCCCccc
Q 044882 430 WIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHL---P-ALEMLVIEGCEELL---VSVTS--LPALCKFISGGCKKVV 500 (815)
Q Consensus 430 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l---~-~L~~L~l~~~~~l~---~~~~~--~~~L~~L~l~~~~~~~ 500 (815)
+.. ..+..+++|++|++++| .+.+.+|..+ + +|+.|++++|.... ..+.. +++|+.|++++|....
T Consensus 334 ip~----~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 334 LPM----DTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp CCH----HHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred CCH----HHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 211 11225677777777773 5555666432 3 67777777665321 11112 5567777776665431
Q ss_pred cccccCCC--CCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccc
Q 044882 501 WKSAAGHP--GSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTL 578 (815)
Q Consensus 501 ~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l 578 (815)
..+ ....++|++|++++|...+.+|..+ ..+++|+.|++++|.....++. .+..+++|+.+
T Consensus 409 -----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~----------~~~~l~~L~~L 471 (768)
T 3rgz_A 409 -----KIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQ----------ELMYVKTLETL 471 (768)
T ss_dssp -----ECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCCG----------GGGGCTTCCEE
T ss_pred -----ccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcCCH----------HHcCCCCceEE
Confidence 111 1112567777777776555555555 5667777777777654332221 13456677777
Q ss_pred cccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCC
Q 044882 579 TVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVEL 658 (815)
Q Consensus 579 ~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 658 (815)
++++|.+.+..|..+.++++|++|++++|.....+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+..
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 77777777777777777777777777777766677777777777777777777777777777777777777777777555
Q ss_pred CCCCCC-CCCCCCce---------EEEcCCcch--------------------hh-------------hhhhcCcCcccC
Q 044882 659 PSLKED-GLPTNLQS---------LTIEGNMEI--------------------WK-------------SMIERGRGFHRF 695 (815)
Q Consensus 659 ~~~~~~-~~~~~L~~---------L~l~~~~~l--------------------~~-------------~~~~~~~~~~~l 695 (815)
..+|.. .....+.. .++.++... .. .....+..+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 444432 11111111 111111000 00 000012346778
Q ss_pred CCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCC-CC
Q 044882 696 SSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPE-KG 774 (815)
Q Consensus 696 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~-~~ 774 (815)
++|+.|++++ +.....+|. .++.+++|+.|++++|.....+|..++.+++|++|++++|.--..+|. .+
T Consensus 632 ~~L~~LdLs~-N~l~g~ip~---------~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 632 GSMMFLDMSY-NMLSGYIPK---------EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp BCCCEEECCS-SCCBSCCCG---------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccccEEECcC-CcccccCCH---------HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 9999999999 333335554 346789999999999666668999999999999999999644446665 23
Q ss_pred CCCccceeeecCCcc
Q 044882 775 LPSSLLQLDIWGCPL 789 (815)
Q Consensus 775 ~~~~L~~L~i~~c~~ 789 (815)
.+++|++|++++|+-
T Consensus 702 ~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNL 716 (768)
T ss_dssp GCCCCSEEECCSSEE
T ss_pred CCCCCCEEECcCCcc
Confidence 457899999999863
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=381.77 Aligned_cols=545 Identities=17% Similarity=0.123 Sum_probs=264.7
Q ss_pred ccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCccccccc-hhhcCcCCc
Q 044882 149 LFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKL 225 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L 225 (815)
|.++++|++|+|++|.++.+ |..|+++++|++|++++|.++.+|. .++++++|++|++++| .+..+| ..++++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCC
Confidence 44455555555555555443 3444555555555555555554443 3455555555555555 333333 334555555
Q ss_pred ceeeccCCCcccccccccccccccccccceeeccCCC--CC--ccccccccccccceeeecccccCChhhhhhcccCCCc
Q 044882 226 HHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSG--SG--LRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKK 301 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~--~~--~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 301 (815)
++|++++|......|..++++++|++|+......... .. ...+++|+.|. +....+ .......+..+.
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~--L~~n~l------~~~~~~~~~~l~ 195 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE--LSSNQI------KEFSPGCFHAIG 195 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE--CTTCCC------CCBCTTGGGGSS
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE--CCCCcc------cccChhhhhhhh
Confidence 5555555542222233344455555443221110000 00 00111222111 000000 011112234455
Q ss_pred CCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCC-CccCCCCCCCCccEEEEecCCCCCCCC-C
Q 044882 302 NLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKF-PTWFGDSSFSNLVTLEFENCDMCTALP-S 379 (815)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~ 379 (815)
+|+.+.+..+... ..........+ ..++|+.|+++++....+ |.++.....++|++|++++|.+....+ .
T Consensus 196 ~L~~L~l~~~~l~-------~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 196 RLFGLFLNNVQLG-------PSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp EECEEECTTCCCH-------HHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred hhhhhhccccccC-------hhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc
Confidence 6666666544330 00011111111 246788888888776554 344432112458888888888776655 6
Q ss_pred CCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeecccccccccc----ccCCCCCcccCCCcceeeeccCcc
Q 044882 380 VGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWI----PLRSGQGVEGFPKLRELHILRCSK 455 (815)
Q Consensus 380 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~~~~~~~L~~L~l~~c~~ 455 (815)
++.+++|++|++++|. +..+....+.. +++|+.|.+.+...-..+. .......+..+++|+.|++++ +.
T Consensus 268 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~-----l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~-n~ 340 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNN-IQHLFSHSLHG-----LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED-ND 340 (680)
T ss_dssp TTTCTTCCEEECCSCC-BSEECTTTTTT-----CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS-CC
T ss_pred ccCcccccEeeCCCCc-cCccChhhhcC-----CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC-Cc
Confidence 7888888888888874 33333333332 6777777776432110000 000001333677788888877 45
Q ss_pred cccCCC---CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchh
Q 044882 456 LKGTFP---EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEA 532 (815)
Q Consensus 456 l~~~lp---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 532 (815)
+.+..| ..+++|+.|++++|..-...++ ...+.....++|+.|++++|......+..
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~--------------------~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLT--------------------NETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEEC--------------------TTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcc--------------------hhhhcccccCcCceEECCCCCCCeEChhh
Confidence 654333 2345566666555431100000 00000001145777777777655444444
Q ss_pred hhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCc--
Q 044882 533 WMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNL-- 610 (815)
Q Consensus 533 ~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l-- 610 (815)
+ ..+++|+.|++++|.....++.. .+.++++|+.+++++|.+.+..+..+..+++|++|++++|...
T Consensus 401 ~--~~l~~L~~L~L~~N~l~~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 401 F--SWLGHLEVLDLGLNEIGQELTGQ---------EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp T--TTCTTCCEEECCSSCCEEECCSG---------GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred h--hCCCCCCEEeCCCCcCccccCcc---------cccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 4 56777777777777443222211 1345566666666666666666666666777777777766543
Q ss_pred ccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC----------CCCCCCCceEEEcCCcc
Q 044882 611 VSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE----------DGLPTNLQSLTIEGNME 680 (815)
Q Consensus 611 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~L~~L~l~~~~~ 680 (815)
...|..+..+++|++|++++|.+.+..+..+.++++|++|++++|. ++.++. .+.+++|++|++++|..
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 3456666666777777777776665555556666777777777663 332211 13344555555555533
Q ss_pred hhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCC-CCCCCCe
Q 044882 681 IWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIV-DLQNLAS 758 (815)
Q Consensus 681 l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~-~l~~L~~ 758 (815)
... +. ..+.++++|+.|++++ +.+..++. ..|..+++|+.|++++ +.++.+++ .+. .+++|++
T Consensus 549 ~~i--~~--~~~~~l~~L~~L~Ls~--N~l~~l~~--------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 549 DEI--PV--EVFKDLFELKIIDLGL--NNLNTLPA--------SVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTE 613 (680)
T ss_dssp CCC--CT--TTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSE
T ss_pred CCC--CH--HHcccccCcceeECCC--CCCCcCCH--------hHhCCCCCCCEEECCC-CcCCccChhHhcccccccCE
Confidence 210 00 2344555555555544 44444443 2233444555555555 34444433 222 3445555
Q ss_pred eeeCCC
Q 044882 759 LYLGDC 764 (815)
Q Consensus 759 L~i~~c 764 (815)
|+++++
T Consensus 614 l~l~~N 619 (680)
T 1ziw_A 614 LDMRFN 619 (680)
T ss_dssp EECTTC
T ss_pred EEccCC
Confidence 555443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-40 Score=377.84 Aligned_cols=579 Identities=16% Similarity=0.115 Sum_probs=391.8
Q ss_pred cccccccCCCcccEEEcCCCCccccCc-cccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccch-hhc
Q 044882 144 SILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCA-DMG 220 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~ 220 (815)
.+|..+. +++++|+|++|.++.+|. .|+++++|++|++++|.+..+ |..++++++|++|++++| .+..+|. .|+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 94 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA 94 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence 3444443 689999999999998864 689999999999999999876 688999999999999999 7888886 589
Q ss_pred CcCCcceeeccCCCcccccc-cccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCC
Q 044882 221 NLAKLHHLKNSNTKSLEEMP-VGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDG 299 (815)
Q Consensus 221 ~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 299 (815)
++++|++|++++|. +..+| ..++++++|++|+...... . ......+..
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l------------------------~------~~~~~~~~~ 143 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGL------------------------S------STKLGTQVQ 143 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCC------------------------S------CCCCCSSSC
T ss_pred cCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcc------------------------c------ccCchhhcc
Confidence 99999999999998 66666 4588999999885322110 0 001122566
Q ss_pred CcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCc-cCCCCCCCCccEEEEecCCCCCCC-
Q 044882 300 KKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPT-WFGDSSFSNLVTLEFENCDMCTAL- 377 (815)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l- 377 (815)
+++|++|++++|..++.. ...+. ....++|+.|+++++.+..++. ++. .+++|+.|++.++.+....
T Consensus 144 l~~L~~L~L~~n~l~~~~--------~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 144 LENLQELLLSNNKIQALK--------SEELD-IFANSSLKKLELSSNQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp CTTCCEEECCSSCCCCBC--------HHHHG-GGTTCEESEEECTTCCCCCBCTTGGG--GSSEECEEECTTCCCHHHHH
T ss_pred cccCCEEEccCCcccccC--------HHHhh-ccccccccEEECCCCcccccChhhhh--hhhhhhhhhccccccChhhH
Confidence 788888888877652111 00111 1234678888888877665543 333 4677888887776643211
Q ss_pred ---CCCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCc
Q 044882 378 ---PSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCS 454 (815)
Q Consensus 378 ---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 454 (815)
+.....++|+.|++++|.. ..+....+.. ...++|+.|++.+... ..... ..+..+++|+.|++++|
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l-~~~~~~~~~~---l~~~~L~~L~Ls~n~l-~~~~~----~~~~~l~~L~~L~L~~n- 282 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQL-STTSNTTFLG---LKWTNLTMLDLSYNNL-NVVGN----DSFAWLPQLEYFFLEYN- 282 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCC-CEECTTTTGG---GGGSCCCEEECTTSCC-CEECT----TTTTTCTTCCEEECCSC-
T ss_pred HHHHHHhhhccccEEEccCCcc-cccChhHhhc---cCcCCCCEEECCCCCc-CccCc----ccccCcccccEeeCCCC-
Confidence 0001236788888887743 3333222221 1123488888776532 22211 23346788888888874
Q ss_pred ccccCCC---CCCCCccEEEEecccCc--------c----ccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEE
Q 044882 455 KLKGTFP---EHLPALEMLVIEGCEEL--------L----VSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIE 519 (815)
Q Consensus 455 ~l~~~lp---~~l~~L~~L~l~~~~~l--------~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 519 (815)
++.+..| ..+++|+.|++.++... . ..+..+++|+.|++++|..... ........++|++|+
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI---KSNMFTGLINLKYLS 359 (680)
T ss_dssp CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC---CTTTTTTCTTCCEEE
T ss_pred ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC---ChhHhccccCCcEEE
Confidence 5654444 35677788887654311 1 1344567777777766653211 111112235677777
Q ss_pred EeccCC-cccCchhhh-cCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc-cccCCC
Q 044882 520 IRECDA-LKSLPEAWM-CGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR-SGLHNL 596 (815)
Q Consensus 520 l~~~~~-l~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~-~~~~~l 596 (815)
+++|.. ...++...+ ....++|+.|++++|.... +... .+.++++|+.+++++|.+.+..+ ..+.++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~-~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESD---------AFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE-ECTT---------TTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCe-EChh---------hhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 776642 222222111 0123567777777764221 1111 24567889999999999987655 678899
Q ss_pred CCCceEEeccCCCcccccCCCCCCCCcceEEecccccc--cccccccCCCCCcCcEEecCCCCCCCCCC--CCCCCCCce
Q 044882 597 RQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL--EALPKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQS 672 (815)
Q Consensus 597 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~ 672 (815)
++|++|++++|......+..+..+++|++|++++|.+. +.+|..+..+++|++|++++| .++.++. .+.+++|++
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEI 508 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCE
Confidence 99999999999877677778888999999999999875 567888999999999999999 4555554 367899999
Q ss_pred EEEcCCcchhhhhhhc----CcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 673 LTIEGNMEIWKSMIER----GRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 673 L~l~~~~~l~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
|++++|.......... ...+.++++|+.|++++ +.+..+|. ..|..+++|+.|++++ +.++.+|+
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~--------~~~~~l~~L~~L~Ls~-N~l~~l~~ 577 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPV--------EVFKDLFELKIIDLGL-NNLNTLPA 577 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTCCEEECCS-SCCCCCCT
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCH--------HHcccccCcceeECCC-CCCCcCCH
Confidence 9999997654221110 12378899999999998 67778876 3457889999999999 78888887
Q ss_pred -cCCCCCCCCeeeeCCCCCCcccCCCC---CCCccceeeecCCcchHHHHhc-cCCCcccc
Q 044882 749 -SIVDLQNLASLYLGDCPKLKYFPEKG---LPSSLLQLDIWGCPLIEEKCRK-DGGQYWDL 804 (815)
Q Consensus 749 -~~~~l~~L~~L~i~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~~~~~~-~~~~~w~~ 804 (815)
.+..+++|++|++++| .++.++... .+++|+.|++++||-..+ |.. .+-..|.+
T Consensus 578 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~-c~~~~~~~~~~~ 636 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT-CESIAWFVNWIN 636 (680)
T ss_dssp TTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC-CCCCSSEECCSS
T ss_pred hHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccC-CccHHHHHHHHH
Confidence 4678999999999995 888887643 347999999999885443 432 33345543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=363.85 Aligned_cols=512 Identities=14% Similarity=0.082 Sum_probs=339.3
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCcc-chhhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~ 200 (815)
++++.|.+.++. +....+..|.++++|++|++++|.++.+ |.+|+++++|++|+|++|.++.+ |..++++++
T Consensus 32 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNP------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCC------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 678888877654 4444455778999999999999999987 67789999999999999999877 788999999
Q ss_pred CcEEeccCCccccccc-hhhcCcCCcceeeccCCCccc-ccccccccccccccccceeeccCCCCCccccccccccccce
Q 044882 201 LHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSNTKSLE-EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTL 278 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 278 (815)
|++|++++| .+..+| ..++++++|++|++++|.... .+|..++++++|++|+........ .....+..+..|
T Consensus 106 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L---- 179 (606)
T 3vq2_A 106 LENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLREN---- 179 (606)
T ss_dssp CCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHC----
T ss_pred CCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhcc----
Confidence 999999999 666665 678999999999999998332 478888888888888432211000 000001111100
Q ss_pred eeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCC
Q 044882 279 NISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDS 358 (815)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 358 (815)
+ ..+..|+++++.+..+|.....
T Consensus 180 -------------------------~-------------------------------~~l~~L~l~~n~l~~~~~~~~~- 202 (606)
T 3vq2_A 180 -------------------------P-------------------------------QVNLSLDMSLNPIDFIQDQAFQ- 202 (606)
T ss_dssp -------------------------T-------------------------------TCCCEEECTTCCCCEECTTTTT-
T ss_pred -------------------------c-------------------------------cccceeeccCCCcceeCccccc-
Confidence 0 0133455556665566655542
Q ss_pred CCCCccEEEEecCCCCCC-CC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCC
Q 044882 359 SFSNLVTLEFENCDMCTA-LP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSG 436 (815)
Q Consensus 359 ~l~~L~~L~L~~~~~~~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 436 (815)
..+|+.|++++|.+... .+ .++.++.|+.+.+.......... ........+..+.
T Consensus 203 -~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---l~~~~~~~~~~l~------------------- 259 (606)
T 3vq2_A 203 -GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---LEIFEPSIMEGLC------------------- 259 (606)
T ss_dssp -TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---CSCCCGGGGTTGG-------------------
T ss_pred -CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc---ccccChHHhhhhh-------------------
Confidence 34788888888876532 22 45667777776664321100000 0000000011111
Q ss_pred CCcccCCCcceeeeccCcccccCCC--CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccc
Q 044882 437 QGVEGFPKLRELHILRCSKLKGTFP--EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSV 514 (815)
Q Consensus 437 ~~~~~~~~L~~L~l~~c~~l~~~lp--~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 514 (815)
. -.++.+.+..++.+.+.+| ..+++|+.|++.++..... +.+ ...++
T Consensus 260 ----~-l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--~~l------------------------~~~~~ 308 (606)
T 3vq2_A 260 ----D-VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDV------------------------PKHFK 308 (606)
T ss_dssp ----G-SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC--CCC------------------------CTTCC
T ss_pred ----h-ccHhheeccccccccccccccccCCCCCEEEecCccchhh--hhc------------------------ccccc
Confidence 1 1344555544455554443 2345555555555432110 000 11146
Q ss_pred cceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCc--ccc
Q 044882 515 LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS--RSG 592 (815)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~--~~~ 592 (815)
|++|++++|.. +.+|. + .+++|++|++++|..+..+ .+..+++|+.+++++|.+.+.. +..
T Consensus 309 L~~L~l~~n~l-~~lp~-~---~l~~L~~L~l~~n~~~~~~------------~~~~l~~L~~L~ls~n~l~~~~~~~~~ 371 (606)
T 3vq2_A 309 WQSLSIIRCQL-KQFPT-L---DLPFLKSLTLTMNKGSISF------------KKVALPSLSYLDLSRNALSFSGCCSYS 371 (606)
T ss_dssp CSEEEEESCCC-SSCCC-C---CCSSCCEEEEESCSSCEEC------------CCCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred CCEEEcccccC-ccccc-C---CCCccceeeccCCcCccch------------hhccCCCCCEEECcCCccCCCcchhhh
Confidence 77777777765 66662 1 6788888888888544322 2456677788888888777653 667
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCC-CCCCCCC
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKE-DGLPTNL 670 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L 670 (815)
+..+++|++|++++|. ...+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|......+. .+.+++|
T Consensus 372 ~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 7888999999999887 55677788888999999999998877776 5788899999999999965554443 3677899
Q ss_pred ceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccC
Q 044882 671 QSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSI 750 (815)
Q Consensus 671 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 750 (815)
++|++++|....... +..+..+++|+.|++++ +.+..++. ..+..+++|+.|++++|+.....|..+
T Consensus 451 ~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~Ls~--n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTL---SNVFANTTNLTFLDLSK--CQLEQISW--------GVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp CEEECTTCEEGGGEE---CSCCTTCTTCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred CEEECCCCcCCCcch---HHhhccCCCCCEEECCC--CcCCccCh--------hhhcccccCCEEECCCCcCCCcCHHHc
Confidence 999999987554212 25678889999999998 45555544 345678899999999964444447788
Q ss_pred CCCCCCCeeeeCCCCCCcccCCC--CCCCccceeeecCCcc
Q 044882 751 VDLQNLASLYLGDCPKLKYFPEK--GLPSSLLQLDIWGCPL 789 (815)
Q Consensus 751 ~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~L~i~~c~~ 789 (815)
..+++|++|++++| .++.+|.. .++++|+.|++++||-
T Consensus 518 ~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 518 NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 89999999999986 58888873 3345799999988764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=356.97 Aligned_cols=507 Identities=15% Similarity=0.134 Sum_probs=341.4
Q ss_pred cccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchhhcCcCCcceeecc
Q 044882 154 RLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 231 (815)
.+++|+|++|.++.+ |.+|+++++|++|+|++|.+..+ |..|+++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 578888888888877 66788888888888888888865 6778888888888888884334446778888888888888
Q ss_pred CCCccccc-ccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEE
Q 044882 232 NTKSLEEM-PVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRW 310 (815)
Q Consensus 232 ~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 310 (815)
+|. +..+ |..++++++|++| ++++
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L------------------------------------------------------~L~~ 138 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESL------------------------------------------------------YLGS 138 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEE------------------------------------------------------ECCS
T ss_pred ccC-cccCCcchhccCCcccEE------------------------------------------------------ECCC
Confidence 887 5544 3345555555555 3333
Q ss_pred ccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCc-cCCCCCCCCcc--EEEEecCCCCCCCCCCCCCCCcC
Q 044882 311 TLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPT-WFGDSSFSNLV--TLEFENCDMCTALPSVGQLPSLK 387 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~--~L~L~~~~~~~~l~~l~~l~~L~ 387 (815)
|...+. ....+..+++|+.|++++|.+..++. .+. .+++|+ .|++++|.+.+..+......+|+
T Consensus 139 n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 139 NHISSI-----------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp SCCCCC-----------CCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred Cccccc-----------CcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCCccCccChhHhhhcccc
Confidence 332100 01223336788888888887776643 333 467777 78888888777766555567888
Q ss_pred eeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccC--CCcceeeeccCcccccCCC---C
Q 044882 388 HLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGF--PKLRELHILRCSKLKGTFP---E 462 (815)
Q Consensus 388 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~lp---~ 462 (815)
.|++++|..+....... ....++.+.+..+........ ....+..+ .+|+.|++++ +.+++..+ .
T Consensus 206 ~L~l~~~~~~~~~~~~l-------~~~~l~~l~~~~~~~~~~~~i--~~~~~~~l~~~~L~~L~l~~-n~l~~~~~~~~~ 275 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGL-------KNSTIQSLWLGTFEDMDDEDI--SPAVFEGLCEMSVESINLQK-HYFFNISSNTFH 275 (606)
T ss_dssp EEECTTCSCHHHHHHHT-------TTCEEEEEECCCCTTSCCCCC--CGGGGGGGGGSEEEEEECTT-CCCSSCCTTTTT
T ss_pred ccccCCchhHHHHhhhc-------cccchhheechhhcccccccc--ChhHhchhhcCceeEEEeec-CccCccCHHHhc
Confidence 88888875332211100 011223333332222211110 00111111 2677777777 35552222 2
Q ss_pred CCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCC--CCccccceEEEeccCCcccCchhhhcCCCCC
Q 044882 463 HLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPG--SQNSVLKKIEIRECDALKSLPEAWMCGTNSS 540 (815)
Q Consensus 463 ~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 540 (815)
.+++|+.|++++|... .++. ...++|++|++++|......+..+ ..+++
T Consensus 276 ~l~~L~~L~l~~n~l~---------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~ 326 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS---------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPS 326 (606)
T ss_dssp TCTTCSEEECTTSCCS---------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTT
T ss_pred cccCCCEEeccCCccC---------------------------CCChhhcccccCCEEECccCCcCcCchhhh--hccCc
Confidence 3456666666555321 1111 112577888888876554444444 67889
Q ss_pred cceEEEeccCCchhhhccccccccceEecccccccccccccccccccCc--ccccCCCCCCceEEeccCCCcccccCCCC
Q 044882 541 LEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS--RSGLHNLRQLQEISIRRCGNLVSFPEGGL 618 (815)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 618 (815)
|++|++++|.....++.. .+.++++|+.+++++|.+.+.. +..+..+++|++|++++|......|..+.
T Consensus 327 L~~L~l~~n~~~~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTG---------CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp CSEEECCSCSSCCBCCSS---------TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred CCEEECCCCCcccccchh---------hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 999999988654333322 1456788888888888887766 67788999999999999987777788888
Q ss_pred CCCCcceEEeccccccccccc-ccCCCCCcCcEEecCCCCCCCCCC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCC
Q 044882 619 PCAKLTRLEISSCKRLEALPK-GLHNLTSLQELTIGRGVELPSLKE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFS 696 (815)
Q Consensus 619 ~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 696 (815)
.+++|++|++++|.+.+..+. .+..+++|++|++++|......+. .+.+++|++|++++|+......+ ....+..++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~ 476 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLG 476 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCC
Confidence 899999999999998776654 488999999999999955444443 36789999999999976542211 114578899
Q ss_pred CccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCC--
Q 044882 697 SLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKG-- 774 (815)
Q Consensus 697 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~-- 774 (815)
+|+.|++++ +.+..++. ..+..+++|+.|++++|+.....|..+.++++| +|++++| +++.++...
T Consensus 477 ~L~~L~Ls~--n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~ 544 (606)
T 3t6q_A 477 RLEILVLSF--CDLSSIDQ--------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLP 544 (606)
T ss_dssp TCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHH
T ss_pred CccEEECCC--CccCccCh--------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcc
Confidence 999999999 45655544 345678999999999965555566689999999 9999985 677766533
Q ss_pred CCCccceeeecCCcc
Q 044882 775 LPSSLLQLDIWGCPL 789 (815)
Q Consensus 775 ~~~~L~~L~i~~c~~ 789 (815)
..++|+.|++++||-
T Consensus 545 ~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 545 ILSQQRTINLRQNPL 559 (606)
T ss_dssp HHHTSSEEECTTCCE
T ss_pred cCCCCCEEeCCCCCc
Confidence 247899999999874
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=357.51 Aligned_cols=504 Identities=13% Similarity=0.099 Sum_probs=338.1
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCcc-chhhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~ 200 (815)
+.++.|.+.++. +....+..|.++++|++|+|++|.+..+ |.+|+++++|++|++++|.+..+ |..++++++
T Consensus 33 ~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSFNV------LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECTTCC------CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CcCcEEEccCCc------cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 478888877654 5555567889999999999999999977 78899999999999999999866 689999999
Q ss_pred CcEEeccCCcccccc-chhhcCcCCcceeeccCCCcccccc-cccccccccccccceeeccCCCCCccccccccccccce
Q 044882 201 LHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSNTKSLEEMP-VGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTL 278 (815)
Q Consensus 201 L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 278 (815)
|++|++++| .+..+ |..++++++|++|++++|. +..++ ..+..++
T Consensus 107 L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~------------------------------- 153 (606)
T 3t6q_A 107 LKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTE------------------------------- 153 (606)
T ss_dssp CCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCT-------------------------------
T ss_pred ccEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccccCCc-------------------------------
Confidence 999999999 66666 6779999999999999998 55442 1222233
Q ss_pred eeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcc--cEEEeecCCCCCCccCC
Q 044882 279 NISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLE--QFCISGYGGTKFPTWFG 356 (815)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~p~~~~ 356 (815)
+|+.|++++|.... .....+..+++|+ .|+++++.+..++....
T Consensus 154 -----------------------~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 154 -----------------------KLKVLDFQNNAIHY-----------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp -----------------------TCCEEECCSSCCCE-----------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred -----------------------ccCEEEcccCcccc-----------cChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 44455555554410 0112234456777 78888988887766554
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCC--CcCeeeeccCCCce--ecCccccCCCCCCCCCCcceeeeccccccccccc
Q 044882 357 DSSFSNLVTLEFENCDMCTALPSVGQLP--SLKHLAVCGMSRVK--RLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIP 432 (815)
Q Consensus 357 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~--~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 432 (815)
...+|+.|++++|..... .+..+. .++.+.+..+.... .+....+.+ ..-.+|+.+.+.+.. +.....
T Consensus 200 --~~~~L~~L~l~~~~~~~~--~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~---l~~~~L~~L~l~~n~-l~~~~~ 271 (606)
T 3t6q_A 200 --DSAVFQSLNFGGTQNLLV--IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG---LCEMSVESINLQKHY-FFNISS 271 (606)
T ss_dssp --TTCEEEEEECTTCSCHHH--HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG---GGGSEEEEEECTTCC-CSSCCT
T ss_pred --hhccccccccCCchhHHH--HhhhccccchhheechhhccccccccChhHhch---hhcCceeEEEeecCc-cCccCH
Confidence 356899999998862211 112222 23333333322221 111111111 011267777777653 222222
Q ss_pred cCCCCCcccCCCcceeeeccCcccccCCCC---CCCCccEEEEecccCccc---cCCCCCCcceEEeCCCCccccccccC
Q 044882 433 LRSGQGVEGFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLV---SVTSLPALCKFISGGCKKVVWKSAAG 506 (815)
Q Consensus 433 ~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~ 506 (815)
..+..+++|++|++++| .++ .+|. .+++|++|++++|..... .+..+
T Consensus 272 ----~~~~~l~~L~~L~l~~n-~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------- 324 (606)
T 3t6q_A 272 ----NTFHCFSGLQELDLTAT-HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF--------------------- 324 (606)
T ss_dssp ----TTTTTCTTCSEEECTTS-CCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC---------------------
T ss_pred ----HHhccccCCCEEeccCC-ccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc---------------------
Confidence 33457899999999994 777 6774 456777887777753211 12223
Q ss_pred CCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccc
Q 044882 507 HPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQS 586 (815)
Q Consensus 507 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~ 586 (815)
++|++|++++|.....++...+ ..+++|++|++++|.... +.. . ...+.++++|+.+++++|.+.
T Consensus 325 ------~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~--~-----~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 325 ------PSLTHLSIKGNTKRLELGTGCL-ENLENLRELDLSHDDIET-SDC--C-----NLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp ------TTCSEEECCSCSSCCBCCSSTT-TTCTTCCEEECCSSCCCE-EEE--S-----TTTTTTCTTCCEEECCSCSCE
T ss_pred ------CcCCEEECCCCCcccccchhhh-hccCcCCEEECCCCcccc-ccC--c-----chhcccCCCCCEEECCCCcCC
Confidence 4566666666655545554432 677888888888774321 110 0 012456778888888888888
Q ss_pred cCcccccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCC-CC--
Q 044882 587 SSSRSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPS-LK-- 662 (815)
Q Consensus 587 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-- 662 (815)
+..+..+..+++|++|++++|......+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|..... ++
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 77778888888888888888876555444 367788888888888888777777888888888888888854331 11
Q ss_pred -CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCC
Q 044882 663 -EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFP 741 (815)
Q Consensus 663 -~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 741 (815)
..+.+++|++|++++|...... +..+..+++|+.|++++ +.+..++. ..+..+++| .|++++|
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~--N~l~~~~~--------~~l~~l~~L-~L~L~~N- 533 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSID----QHAFTSLKMMNHVDLSH--NRLTSSSI--------EALSHLKGI-YLNLASN- 533 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCS--SCCCGGGG--------GGGTTCCSC-EEECCSS-
T ss_pred hhhccCCCccEEECCCCccCccC----hhhhccccCCCEEECCC--CccCcCCh--------hHhCccccc-EEECcCC-
Confidence 2346788888888888654322 24677888899999988 45554443 244677888 8999995
Q ss_pred CCcccc-ccCCCCCCCCeeeeCCCC
Q 044882 742 NLERLS-SSIVDLQNLASLYLGDCP 765 (815)
Q Consensus 742 ~l~~l~-~~~~~l~~L~~L~i~~c~ 765 (815)
.++.++ ..+..+++|++|++++||
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cccccCHhhcccCCCCCEEeCCCCC
Confidence 455554 467788899999999875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=327.19 Aligned_cols=505 Identities=14% Similarity=0.089 Sum_probs=294.4
Q ss_pred cCCceeEEEeecccccccccccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcccc-CccccC
Q 044882 96 FSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGD 174 (815)
Q Consensus 96 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~ 174 (815)
.+..++++.+..+...... ...+.++++|+.|.+.++. +....+..|.++++|++|+|++|.++.+ |.+|++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 4577889888876544332 2467789999999887754 4444566789999999999999999987 889999
Q ss_pred CccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCcccc--ccchhhcCcCCcceeeccCCCccccc-ccccccccccc
Q 044882 175 LRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLK--KLCADMGNLAKLHHLKNSNTKSLEEM-PVGIGRLTSLQ 250 (815)
Q Consensus 175 l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~ 250 (815)
+++|++|++++|.+..+| ..++++++|++|++++| .+. .+|..++++++|++|++++|. +..+ |..++.+++|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENP 180 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCT
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccc
Confidence 999999999999999887 78999999999999999 555 579999999999999999998 5555 45588888776
Q ss_pred c----ccceeec--cCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhH
Q 044882 251 T----LCNFVVG--KGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEI 324 (815)
Q Consensus 251 ~----L~~~~~~--~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 324 (815)
. |+..... ......+... +|+.|. +. ............+..+..|+.+.+..+.......... .
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~----L~---~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~--~ 250 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGI-KLHELT----LR---GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI--F 250 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTC-EEEEEE----EE---SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC--C
T ss_pred cccceeeccCCCcceeCcccccCc-eeeeee----cc---CCccchhHHHHHhccccccccccccccccccCCcccc--c
Confidence 3 4221111 1111111111 333321 11 1111223344456667777777776654421111100 0
Q ss_pred HHHHhhcCCCCCCcccEEE-eecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCcc
Q 044882 325 EKDVLNMLKPHENLEQFCI-SGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSE 403 (815)
Q Consensus 325 ~~~~~~~l~~~~~L~~L~l-~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 403 (815)
....+..+... .++.+.+ ..+........+. .+++|+.|++++|.+. .++.+..+++|+.|++++|.. +.++ .
T Consensus 251 ~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~-~l~~l~~~~~L~~L~l~~n~l-~~lp-~ 324 (606)
T 3vq2_A 251 EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFH--CLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQL-KQFP-T 324 (606)
T ss_dssp CGGGGTTGGGS-EEEEEEECCCTTCCGGGGSCG--GGTTCSEEEEESCCCC-CCCCCCTTCCCSEEEEESCCC-SSCC-C
T ss_pred ChHHhhhhhhc-cHhheeccccccccccccccc--cCCCCCEEEecCccch-hhhhccccccCCEEEcccccC-cccc-c
Confidence 00111111111 2334444 2222221111122 4667777777777653 345666677777777777643 4433 1
Q ss_pred ccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccC--CC---CCCCCccEEEEecccCc
Q 044882 404 FYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGT--FP---EHLPALEMLVIEGCEEL 478 (815)
Q Consensus 404 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--lp---~~l~~L~~L~l~~~~~l 478 (815)
+ .+++|+.|.+.++...... .+..+++|+.|++++| .+++. +| ..+++|+.|++++|...
T Consensus 325 ~-------~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 325 L-------DLPFLKSLTLTMNKGSISF-------KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp C-------CCSSCCEEEEESCSSCEEC-------CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred C-------CCCccceeeccCCcCccch-------hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccc
Confidence 1 2566666666555333222 1125677777777773 44422 12 23455555555554311
Q ss_pred c--ccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhh
Q 044882 479 L--VSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIA 556 (815)
Q Consensus 479 ~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 556 (815)
. ..+..+ ++|++|++++|......+...+ ..+++|+.|++++|......+
T Consensus 390 ~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 390 IMSANFMGL---------------------------EELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EECCCCTTC---------------------------TTCCEEECTTSEEESTTTTTTT-TTCTTCCEEECTTSCCEECCT
T ss_pred cchhhccCC---------------------------CCCCeeECCCCccCCccChhhh-hccccCCEEECcCCCCCccch
Confidence 1 011111 3455555555543333331111 456666666666664322111
Q ss_pred ccccccccceEeccccccccccccccccccc-CcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc
Q 044882 557 AVQLPLSLKNLLIHKCDNIRTLTVEEGIQSS-SSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE 635 (815)
Q Consensus 557 ~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 635 (815)
. .+.++++|+.+++++|.+.+ ..|..+..+++|++|++++|......|..+..+++|++|++++|++.+
T Consensus 442 ~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 442 G----------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp T----------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred h----------hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 1 13345566666666666655 345566666777777777766555555666666677777777776666
Q ss_pred ccccccCCCCCcCcEEecCCCCCCCCCCC-CCC-CCCceEEEcCCc
Q 044882 636 ALPKGLHNLTSLQELTIGRGVELPSLKED-GLP-TNLQSLTIEGNM 679 (815)
Q Consensus 636 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~-~~L~~L~l~~~~ 679 (815)
..|..+..+++|++|++++| .++.+|.. ..+ ++|++|++++|+
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred cCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 66666666677777777776 34444443 222 346666666665
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=334.78 Aligned_cols=505 Identities=16% Similarity=0.074 Sum_probs=246.0
Q ss_pred CcccEEEcCCCCcccc-CccccCCccCCEEecCCCC-CCcc-chhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTE-IRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
++|++|+|++|.++.+ |.+|.++++|++|+|++|. +..+ |..++++++|++|+|++|......|..|+++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 4566666666666654 4566666666666666663 3344 45566666666666666632223355666666666666
Q ss_pred ccCCCcccccccc--cccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceee
Q 044882 230 NSNTKSLEEMPVG--IGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELL 307 (815)
Q Consensus 230 l~~~~~l~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 307 (815)
+++|.....+|.. ++++++|++|+........ . .....+..+++|+.|+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------------------------~-----~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------------------------L-----YLHPSFGKLNSLKSID 154 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------------------------C-----CCCGGGGTCSSCCEEE
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccc------------------------c-----ccchhHhhCCCCCEEE
Confidence 6666533333433 5555555555322111000 0 0001133444555555
Q ss_pred eEEccCCCCCCCchhhHHHHHhhcCCCC--CCcccEEEeecCCCC-CCccCCCCCCC------CccEEEEecCCCCCCCC
Q 044882 308 LRWTLSTDGSSSREAEIEKDVLNMLKPH--ENLEQFCISGYGGTK-FPTWFGDSSFS------NLVTLEFENCDMCTALP 378 (815)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~-~p~~~~~~~l~------~L~~L~L~~~~~~~~l~ 378 (815)
+++|...+.... .+..+ ++|+.|+++++.... .|..+. .++ .|+.|++++|.+....+
T Consensus 155 Ls~N~i~~~~~~-----------~l~~l~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 155 FSSNQIFLVCEH-----------ELEPLQGKTLSFFSLAANSLYSRVSVDWG--KCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp EESSCCCCCCSG-----------GGHHHHHCSSCCCEECCSBSCCCCCCCCC--SSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred CCCCcCCeeCHH-----------HcccccCCccceEECCCCccccccccchh--hcCCccccCceeEEecCCCcCchhHH
Confidence 555443211100 01111 456666666655432 222221 112 36677776665544333
Q ss_pred -CC---CCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcc--cCCCcceeeecc
Q 044882 379 -SV---GQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVE--GFPKLRELHILR 452 (815)
Q Consensus 379 -~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~--~~~~L~~L~l~~ 452 (815)
.+ ...+.++.+.+..+..-.... +.+ +..... ..+. ..++|+.|++++
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~-----------~~~-----------l~~~~~----~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFG-----------FHN-----------IKDPDQ----NTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSS-----------CSS-----------STTGGG----TTTTTTTTSCCCEEECTT
T ss_pred HHHHhhcCcccccceeccccccccccc-----------ccc-----------cCCCCh----hhhhccccCCccEEECCC
Confidence 11 122345555554221000000 000 000000 0111 246777888877
Q ss_pred CcccccCCC---CCCCCccEEEEecccCccc---cCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCc
Q 044882 453 CSKLKGTFP---EHLPALEMLVIEGCEELLV---SVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDAL 526 (815)
Q Consensus 453 c~~l~~~lp---~~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 526 (815)
| .+.+..| ..+++|+.|++++|..... .+..+ ++|++|++++|...
T Consensus 276 n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l---------------------------~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 276 G-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL---------------------------DNLQVLNLSYNLLG 327 (844)
T ss_dssp C-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC---------------------------SSCCEEEEESCCCS
T ss_pred C-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC---------------------------CCCCEEECCCCCCC
Confidence 3 4543333 3456677777766643211 12222 34555555555433
Q ss_pred ccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEecc
Q 044882 527 KSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRR 606 (815)
Q Consensus 527 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 606 (815)
...+..+ ..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.+.+. ..+++|+.|++++
T Consensus 328 ~~~~~~~--~~l~~L~~L~L~~N~-i~~~~~~---------~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 328 ELYSSNF--YGLPKVAYIDLQKNH-IAIIQDQ---------TFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSG 390 (844)
T ss_dssp CCCSCSC--SSCTTCCEEECCSCC-CCCCCSS---------CSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEES
T ss_pred ccCHHHh--cCCCCCCEEECCCCC-CCccChh---------hhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCC
Confidence 3323333 455666666666652 2222111 133455566666666655432 2256666666666
Q ss_pred CCCcccccCCCCCCCCcceEEeccccccccc-ccccCCCCCcCcEEecCCCCCCCCCC--CCCCCCCceEEEcCCcchhh
Q 044882 607 CGNLVSFPEGGLPCAKLTRLEISSCKRLEAL-PKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQSLTIEGNMEIWK 683 (815)
Q Consensus 607 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~ 683 (815)
|+. ..+|.. ..+++.|++++|.+.+.- +..+..+++|++|++++|......+. ...+++|+.|++++|.....
T Consensus 391 N~l-~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 391 NKL-VTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCC-CCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred CCc-cccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 653 344432 345666666666654321 12244666677777776632221111 12356667777766653211
Q ss_pred hh-hhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeC
Q 044882 684 SM-IERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLG 762 (815)
Q Consensus 684 ~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~ 762 (815)
.. ...+..+.++++|+.|++++ +.+..++. ..+..+++|+.|++++ |.++.+|+.... ++|+.|+++
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~--------~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls 534 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNH--NYLNSLPP--------GVFSHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDIS 534 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCH--HHHTTCCT--------TSSSSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEE
T ss_pred cccccchhhhcCcccccEEECCC--CcccccCh--------hHccchhhhheeECCC-CCCCccChhhhh-ccccEEECC
Confidence 00 00112456667777777776 45555554 3345566777777777 466666653332 677777777
Q ss_pred CCCCCcccCCCCCCCccceeeecCCc
Q 044882 763 DCPKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 763 ~c~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
+ ++++.++... +++|+.|+++++|
T Consensus 535 ~-N~l~~~~~~~-~~~L~~l~l~~Np 558 (844)
T 3j0a_A 535 R-NQLLAPNPDV-FVSLSVLDITHNK 558 (844)
T ss_dssp E-ECCCCCCSCC-CSSCCEEEEEEEC
T ss_pred C-CcCCCCChhH-hCCcCEEEecCCC
Confidence 6 3555554433 3467777776544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.57 Aligned_cols=458 Identities=16% Similarity=0.151 Sum_probs=246.0
Q ss_pred CcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccchh-hcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 229 (815)
++|++|++++|.++.+ |.+|+++++|++|++++|.++.+| ..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 6788999999888876 567888899999999998888765 67888889999999888 56655544 88889999999
Q ss_pred ccCCCcccc--cccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceee
Q 044882 230 NSNTKSLEE--MPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELL 307 (815)
Q Consensus 230 l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 307 (815)
+++|. +.. .|..++++++|++|+
T Consensus 105 Ls~n~-l~~~~~~~~~~~l~~L~~L~------------------------------------------------------ 129 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPNLTNLQTLR------------------------------------------------------ 129 (549)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEE------------------------------------------------------
T ss_pred CCCCc-ccccchhhhhhccCCccEEE------------------------------------------------------
Confidence 98887 443 344455555555553
Q ss_pred eEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCC-CCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCC
Q 044882 308 LRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTK-FPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPS 385 (815)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 385 (815)
+++|...+ ......+..+++|+.|+++++.+.. .|.++. .+++|++|++++|....... .++.+++
T Consensus 130 L~~n~~~~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 197 (549)
T 2z81_A 130 IGNVETFS----------EIRRIDFAGLTSLNELEIKALSLRNYQSQSLK--SIRDIHHLTLHLSESAFLLEIFADILSS 197 (549)
T ss_dssp EEESSSCC----------EECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEEEEEEEECSBSTTHHHHHHHSTTT
T ss_pred CCCCcccc----------ccCHhhhhcccccCeeeccCCcccccChhhhh--ccccCceEecccCcccccchhhHhhccc
Confidence 22221000 0000111222233333333333322 233333 24555555555554322111 1123445
Q ss_pred cCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC----
Q 044882 386 LKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP---- 461 (815)
Q Consensus 386 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---- 461 (815)
|++|++++|... ..+ +. .. .....+++|+.|++.++ .+.+..+
T Consensus 198 L~~L~L~~n~l~-~~~-----------~~----------------~~----~~~~~~~~L~~L~l~~n-~l~~~~~~~l~ 244 (549)
T 2z81_A 198 VRYLELRDTNLA-RFQ-----------FS----------------PL----PVDEVSSPMKKLAFRGS-VLTDESFNELL 244 (549)
T ss_dssp BSEEEEESCBCT-TCC-----------CC----------------CC----SSCCCCCCCCEEEEESC-EEEHHHHHHHH
T ss_pred ccEEEccCCccc-ccc-----------cc----------------cc----chhhhhhcccceecccc-ccchhHHHHHH
Confidence 555555444211 000 00 00 00113566677777663 3332111
Q ss_pred ---CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCccc-----Cchhh
Q 044882 462 ---EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKS-----LPEAW 533 (815)
Q Consensus 462 ---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~ 533 (815)
..+++|+.+++.+|..... ..++.. ..-......+|+.|.+.++..... ++...
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~--~~~~~~----------------~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGL--GDFNPS----------------ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECC--SCCCCC----------------TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred HHhhhhcccccccccccccccc--cccccc----------------chhhhhhhcccccccccccccchhhhcccchhhh
Confidence 2345566666655532110 000000 000001124566666666542211 11111
Q ss_pred hcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc---cccCCCCCCceEEeccCCCc
Q 044882 534 MCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR---SGLHNLRQLQEISIRRCGNL 610 (815)
Q Consensus 534 ~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~---~~~~~l~~L~~L~l~~~~~l 610 (815)
...++|+.|++++|. ++.++.. + +.++++|+.|++++|.+.+..+ ..+..+++|++|++++|...
T Consensus 307 --~~~~~L~~L~l~~n~-l~~ip~~-----~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 307 --SLLEKVKRITVENSK-VFLVPCS-----F----SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp --HHSTTCCEEEEESSC-CCCCCHH-----H----HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred --hhcccceEEEeccCc-cccCCHH-----H----HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 234567777777763 3332211 0 1245667777777777766543 23566777777777777543
Q ss_pred cccc--CCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhc
Q 044882 611 VSFP--EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIER 688 (815)
Q Consensus 611 ~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 688 (815)
...+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++| .++.++.. .+++|++|++++|....
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N~l~~------ 445 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNNNLDS------ 445 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSSCCSC------
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCC-Ccccccch-hcCCceEEECCCCChhh------
Confidence 3211 23556677777777777654 56666677777777777777 34444432 34567777777774322
Q ss_pred CcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCC
Q 044882 689 GRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 689 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
.+..+++|++|++++ +.+..+|. . ..+++|+.|++++ +.++.+++ .+..+++|++|++++|+
T Consensus 446 --~~~~l~~L~~L~Ls~--N~l~~ip~----~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 446 --FSLFLPRLQELYISR--NKLKTLPD----A------SLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp --CCCCCTTCCEEECCS--SCCSSCCC----G------GGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred --hcccCChhcEEECCC--CccCcCCC----c------ccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCC
Confidence 234566677777766 45555554 1 2355666777766 34444443 45666666666666654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=332.50 Aligned_cols=207 Identities=14% Similarity=0.143 Sum_probs=137.1
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccC---------------------------------
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP--------------------------------- 169 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp--------------------------------- 169 (815)
.+++.|.+.+.. +...+|+.+..+++|++|+|++|.+..-+
T Consensus 81 ~~V~~L~L~~~~------l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 GRVTGLSLEGFG------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154 (636)
T ss_dssp CCEEEEECTTSC------CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred CCEEEEEecCcc------cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence 467777766544 56678888888999999999888652111
Q ss_pred -cccc-------------------CCccCCEEecC--CCCCCccchhhhccCCCcEEeccCCccccc-------------
Q 044882 170 -DSIG-------------------DLRYLRYLNLS--GTEIRTLPESVNKLYNLHSLLLEDCDRLKK------------- 214 (815)
Q Consensus 170 -~~~~-------------------~l~~L~~L~L~--~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------- 214 (815)
..+. ....++.+.+. +|.++.+|..++++++|++|+|++| .+..
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSE 233 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccc
Confidence 1111 01122222222 4567778888999999999999998 5665
Q ss_pred -----cchhhc--CcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccC
Q 044882 215 -----LCADMG--NLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVK 287 (815)
Q Consensus 215 -----lp~~i~--~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~ 287 (815)
+|..++ ++++|++|++++|...+.+|..++++++|++|+...... +.
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~-----l~--------------------- 287 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG-----IS--------------------- 287 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT-----SC---------------------
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC-----Cc---------------------
Confidence 898888 999999999999987778888888888888774211100 00
Q ss_pred ChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCc--cCCCCCCCCccE
Q 044882 288 DVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPT--WFGDSSFSNLVT 365 (815)
Q Consensus 288 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~ 365 (815)
. ..++. ....+..+..+++|+.|+++++.+..+|. ++. .+++|++
T Consensus 288 ~--~~lp~-----------------------------~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~ 334 (636)
T 4eco_A 288 G--EQLKD-----------------------------DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGM 334 (636)
T ss_dssp H--HHHHH-----------------------------HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCE
T ss_pred c--ccchH-----------------------------HHHhhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCE
Confidence 0 00000 00111122334567777777777777887 665 4788888
Q ss_pred EEEecCCCCCCCCCCCCCCCcCeeeeccCC
Q 044882 366 LEFENCDMCTALPSVGQLPSLKHLAVCGMS 395 (815)
Q Consensus 366 L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 395 (815)
|++++|.+.+.+|.++.+++|++|++++|.
T Consensus 335 L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp EECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred EeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 888888877667777788888888888773
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=329.06 Aligned_cols=500 Identities=16% Similarity=0.089 Sum_probs=316.6
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 233 (815)
++.+.++++++.+|. -.++|++|+|++|.|+.+ |..++++++|++|+|++|.....+ |..|+++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 578889999999997 457999999999999976 688999999999999999666677 778999999999999999
Q ss_pred CcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccC
Q 044882 234 KSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLS 313 (815)
Q Consensus 234 ~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 313 (815)
......|..++.+++|++|+...... .... .....+..++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l------------------------~~~~----~~~~~~~~L~------------ 123 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGL------------------------SDAV----LKDGYFRNLK------------ 123 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCC------------------------SSCC----STTCCCSSCS------------
T ss_pred cCcccCHhHccCCcccCEeeCcCCCC------------------------Cccc----ccCccccccC------------
Confidence 84334477788888888884321110 0000 0000123333
Q ss_pred CCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCC--ccCCCCCCCCccEEEEecCCCCCCCC-CCCCC--CCcCe
Q 044882 314 TDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFP--TWFGDSSFSNLVTLEFENCDMCTALP-SVGQL--PSLKH 388 (815)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p--~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l--~~L~~ 388 (815)
+|+.|++++|.+..++ ..+. .+++|++|++++|.+....+ .++.+ ++|+.
T Consensus 124 -----------------------~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 124 -----------------------ALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp -----------------------SCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred -----------------------CCCEEECCCCcccccccchhHh--hCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 4444444444443332 2232 35666666666666554433 34333 56666
Q ss_pred eeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCC-----
Q 044882 389 LAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEH----- 463 (815)
Q Consensus 389 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~----- 463 (815)
|++++|......+..+.. +++ .+ ....|+.|++++| .+.+..|..
T Consensus 179 L~L~~n~l~~~~~~~~~~------~~~----------------------~~-~~~~L~~L~Ls~n-~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGK------CMN----------------------PF-RNMVLEILDVSGN-GWTVDITGNFSNAI 228 (844)
T ss_dssp CEECCSBSCCCCCCCCCS------SSC----------------------TT-TTCCBSEEBCSSC-CSSTTTTSGGGGTS
T ss_pred EECCCCccccccccchhh------cCC----------------------cc-ccCceeEEecCCC-cCchhHHHHHHhhc
Confidence 666665322211111000 000 00 0112444444442 233222211
Q ss_pred -CCCccEEEEecccC--------c----cccCC--CCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCccc
Q 044882 464 -LPALEMLVIEGCEE--------L----LVSVT--SLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKS 528 (815)
Q Consensus 464 -l~~L~~L~l~~~~~--------l----~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 528 (815)
...++.+.+..+.. + ...+. ..++++.|+++++..... ........++|++|++++|.....
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL---NSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE---CSCCSSSCCCCCEEEEESCCCCEE
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc---ChhhhhcCCCCCEEECCCCcCCCC
Confidence 12333343331100 0 01111 136788888877754321 111122336788888888875555
Q ss_pred CchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCC
Q 044882 529 LPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCG 608 (815)
Q Consensus 529 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~ 608 (815)
.+..+ ..+++|++|++++|.. +.+. .-.+.++++|+.|++++|.+.+..+..+.++++|++|++++|.
T Consensus 306 ~~~~~--~~l~~L~~L~Ls~N~l-~~~~---------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 306 ADEAF--YGLDNLQVLNLSYNLL-GELY---------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CTTTT--TTCSSCCEEEEESCCC-SCCC---------SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred ChHHh--cCCCCCCEEECCCCCC-CccC---------HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 45444 6788888888888843 2211 1124567788888888888887777778888888888888886
Q ss_pred CcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC---CCCCCCCceEEEcCCcchhhhh
Q 044882 609 NLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE---DGLPTNLQSLTIEGNMEIWKSM 685 (815)
Q Consensus 609 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~ 685 (815)
.. .++ .+++|+.|++++|++. .+|.. ..+++.|++++| .++.++. ...+++|+.|++++|.......
T Consensus 374 l~-~i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 374 LT-TIH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp SC-CCS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CC-ccc----CCCCcchhccCCCCcc-ccccc---ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 43 332 2678888888888765 44432 467888888888 4444433 2467899999999997543211
Q ss_pred hhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCC
Q 044882 686 IERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDC 764 (815)
Q Consensus 686 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c 764 (815)
. ..+..+++|+.|++++ +.+..++.. +.....+..+++|+.|++++| .++.+++ .+..+++|++|++++
T Consensus 444 ~---~~~~~~~~L~~L~Ls~--N~l~~~~~~---~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~- 513 (844)
T 3j0a_A 444 D---QTPSENPSLEQLFLGE--NMLQLAWET---ELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS- 513 (844)
T ss_dssp S---SSSCSCTTCCBCEEES--CCCSSSCCS---CCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEES-
T ss_pred c---cccccCCccccccCCC--Ccccccccc---ccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCC-
Confidence 1 2456689999999998 555544431 112245677899999999994 6777765 678999999999998
Q ss_pred CCCcccCCCCCCCccceeeecCCc
Q 044882 765 PKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 765 ~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
++++.++...++++|+.|++++|.
T Consensus 514 N~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 514 NRLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CCCCccChhhhhccccEEECCCCc
Confidence 589999988788999999999875
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=323.18 Aligned_cols=466 Identities=19% Similarity=0.188 Sum_probs=311.7
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccch-hhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~ 200 (815)
+++++|.+.++. +....+..|..+++|++|++++|+++.++ .+|+++++|++|++++|.+..+|. .++++++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 688999887754 44445677899999999999999999875 789999999999999999998875 5999999
Q ss_pred CcEEeccCCccccc--cchhhcCcCCcceeeccCCCccccccc-ccccccccccccceeeccCCCCCccccccccccccc
Q 044882 201 LHSLLLEDCDRLKK--LCADMGNLAKLHHLKNSNTKSLEEMPV-GIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGT 277 (815)
Q Consensus 201 L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 277 (815)
|++|++++| .+.. .|..++++++|++|++++|..++.+|. .++++++|++|+......
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l------------------ 160 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL------------------ 160 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC------------------
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc------------------
Confidence 999999999 6663 567799999999999999986677764 577888777774322110
Q ss_pred eeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCC
Q 044882 278 LNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGD 357 (815)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 357 (815)
. ......+..+++|+.|++ +++....+|.++..
T Consensus 161 ------~------~~~~~~l~~l~~L~~L~l-----------------------------------~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 161 ------R------NYQSQSLKSIRDIHHLTL-----------------------------------HLSESAFLLEIFAD 193 (549)
T ss_dssp ------C------EECTTTTTTCSEEEEEEE-----------------------------------ECSBSTTHHHHHHH
T ss_pred ------c------ccChhhhhccccCceEec-----------------------------------ccCcccccchhhHh
Confidence 0 001111333444444444 44444444444321
Q ss_pred CCCCCccEEEEecCCCCCC----CCCCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeecccccccccccc
Q 044882 358 SSFSNLVTLEFENCDMCTA----LPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPL 433 (815)
Q Consensus 358 ~~l~~L~~L~L~~~~~~~~----l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 433 (815)
.+++|++|++++|.+.+. .+....+++|+.|+++++.......... .
T Consensus 194 -~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----------------------~----- 244 (549)
T 2z81_A 194 -ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL-----------------------L----- 244 (549)
T ss_dssp -STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH-----------------------H-----
T ss_pred -hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH-----------------------H-----
Confidence 356666677766665542 1223445667777776652111100000 0
Q ss_pred CCCCCcccCCCcceeeeccCccccc---------CCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccc
Q 044882 434 RSGQGVEGFPKLRELHILRCSKLKG---------TFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSA 504 (815)
Q Consensus 434 ~~~~~~~~~~~L~~L~l~~c~~l~~---------~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 504 (815)
.....+++|+.+++++|. +.+ ..+..+++++.|.+.++..-... ..
T Consensus 245 ---~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~---------------------~~ 299 (549)
T 2z81_A 245 ---KLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY---------------------LF 299 (549)
T ss_dssp ---GGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG---------------------GS
T ss_pred ---HHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccccccchhh---------------------hc
Confidence 001134555555555542 221 11133455555555544211000 00
Q ss_pred cCCC--CCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccc
Q 044882 505 AGHP--GSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE 582 (815)
Q Consensus 505 ~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~ 582 (815)
..++ .....+|++|++++|. +..+|..++ ..+++|++|++++|.....++.... .+..+++|+.|++++
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENSK-VFLVPCSFS-QHLKSLEFLDLSENLMVEEYLKNSA-------CKGAWPSLQTLVLSQ 370 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESSC-CCCCCHHHH-HHCTTCCEEECCSSCCCHHHHHHHT-------CTTSSTTCCEEECTT
T ss_pred ccchhhhhhcccceEEEeccCc-cccCCHHHH-hcCccccEEEccCCccccccccchh-------hhhccccCcEEEccC
Confidence 0000 0112578999999987 567777654 5789999999999976554432100 134567888889999
Q ss_pred cccccCcc--cccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCC
Q 044882 583 GIQSSSSR--SGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPS 660 (815)
Q Consensus 583 n~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 660 (815)
|.+++..+ ..+..+++|++|++++|. ++.+|..+..+++|++|++++|.+. .+|..+ .++|++|++++| .++.
T Consensus 371 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N-~l~~ 445 (549)
T 2z81_A 371 NHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNN-NLDS 445 (549)
T ss_dssp SCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSS-CCSC
T ss_pred CcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCC-Chhh
Confidence 98877643 458889999999999996 5578888888999999999999964 444433 369999999999 4554
Q ss_pred CCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 661 LKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 661 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
++ +.+++|++|++++|.... . .....+++|+.|++++ +.+..++. ..+..+++|+.|++++|
T Consensus 446 ~~--~~l~~L~~L~Ls~N~l~~--i----p~~~~l~~L~~L~Ls~--N~l~~~~~--------~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 446 FS--LFLPRLQELYISRNKLKT--L----PDASLFPVLLVMKISR--NQLKSVPD--------GIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CC--CCCTTCCEEECCSSCCSS--C----CCGGGCTTCCEEECCS--SCCCCCCT--------TGGGGCTTCCEEECCSS
T ss_pred hc--ccCChhcEEECCCCccCc--C----CCcccCccCCEEecCC--CccCCcCH--------HHHhcCcccCEEEecCC
Confidence 43 477899999999997542 1 1245689999999999 67777766 23467899999999997
Q ss_pred CCCccc
Q 044882 741 PNLERL 746 (815)
Q Consensus 741 ~~l~~l 746 (815)
+-....
T Consensus 508 ~~~~~~ 513 (549)
T 2z81_A 508 PWDCSC 513 (549)
T ss_dssp CBCCCH
T ss_pred CccCCC
Confidence 654333
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=316.83 Aligned_cols=480 Identities=16% Similarity=0.122 Sum_probs=244.9
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccc-hhhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~ 200 (815)
++++.|.+.++. +....+..|..+++|++|+|++|.++.+ |..|+++++|++|++++|.++.+| ..++++++
T Consensus 28 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCC------CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCc------cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 356666655443 3333344566777777777777777766 355677777777777777777665 56777777
Q ss_pred CcEEeccCCccccccch-hhcCcCCcceeeccCCCccc--ccccccccccccccccceeeccCCCCCccccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCA-DMGNLAKLHHLKNSNTKSLE--EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGT 277 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 277 (815)
|++|++++| .+..+|. .++++++|++|++++|. +. .+|..++++++|++|+..
T Consensus 102 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~---------------------- 157 (570)
T 2z63_A 102 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLS---------------------- 157 (570)
T ss_dssp CCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECT----------------------
T ss_pred ccccccccc-ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCc----------------------
Confidence 777777777 5666554 46777777777777776 33 356667777777766321
Q ss_pred eeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCc----ccEEEeecCCCCCCc
Q 044882 278 LNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENL----EQFCISGYGGTKFPT 353 (815)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~p~ 353 (815)
+|..... ....+..+++| +.|+++++.+..++.
T Consensus 158 --------------------------------~n~l~~~-----------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~ 194 (570)
T 2z63_A 158 --------------------------------SNKIQSI-----------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (570)
T ss_dssp --------------------------------TSCCCEE-----------CGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred --------------------------------CCcccee-----------cHHHccchhccchhhhhcccCCCCceecCH
Confidence 1111000 00000011122 455666666655554
Q ss_pred cCCCCCCCCccEEEEecCCCCC-CCC-CCCCCCCcCeeeeccC-----CCceecCccccCCCCCCCCCCcceeeeccccc
Q 044882 354 WFGDSSFSNLVTLEFENCDMCT-ALP-SVGQLPSLKHLAVCGM-----SRVKRLGSEFYGNDSPIPFLCLETLRFEDMQE 426 (815)
Q Consensus 354 ~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~l~~~-----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 426 (815)
.... ..+|++|++++|.... .++ .+..++.++.+.+... ..+..+....+.. ..-..++.+.+.+...
T Consensus 195 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~---l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 195 GAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG---LCNLTIEEFRLAYLDY 269 (570)
T ss_dssp TTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG---GGGSEEEEEEEEETTE
T ss_pred HHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc---ccccchhhhhhhcchh
Confidence 4332 3479999999875332 122 3445555655544321 1112222111111 0011233444443322
Q ss_pred cccccccCCCCCcccCCCcceeeeccCcccccCCC---CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCcccccc
Q 044882 427 WEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKS 503 (815)
Q Consensus 427 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 503 (815)
+..... ..+..+++|+.|++++| .++ .+| ..+ +|+.|++.+|.........+++|+.+++
T Consensus 270 ~~~~~~----~~~~~l~~L~~L~l~~~-~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l---------- 332 (570)
T 2z63_A 270 YLDDII----DLFNCLTNVSSFSLVSV-TIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTF---------- 332 (570)
T ss_dssp EESCST----TTTGGGTTCSEEEEESC-EEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEE----------
T ss_pred hhhhch----hhhcCcCcccEEEecCc-cch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeC----------
Confidence 222222 33446778888888874 555 455 233 6777777776543222233444555544
Q ss_pred ccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccc
Q 044882 504 AAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEG 583 (815)
Q Consensus 504 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n 583 (815)
++|......+. ..+++|++|++++|.... +. .. .-.+.++++|+.+++++|
T Consensus 333 -----------------~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~-~~--~~-----~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 333 -----------------TSNKGGNAFSE----VDLPSLEFLDLSRNGLSF-KG--CC-----SQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp -----------------ESCBSCCBCCC----CBCTTCCEEECCSSCCBE-EE--EE-----EHHHHTCSCCCEEECCSC
T ss_pred -----------------cCCcccccccc----ccCCCCCEEeCcCCccCc-cc--cc-----cccccccCccCEEECCCC
Confidence 44443322222 344555555555542110 00 00 001233445555555555
Q ss_pred ccccCcccccCCCCCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCC-CCC
Q 044882 584 IQSSSSRSGLHNLRQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVEL-PSL 661 (815)
Q Consensus 584 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~ 661 (815)
.+.+..+. +..+++|++|++++|......+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|... ..+
T Consensus 384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 54443333 5555555555555554333332 23445555555555555555555555555555555555555322 122
Q ss_pred CC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 662 KE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 662 ~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
|. .+.+++|++|++++|...... +..+..+++|+.|++++ +.+..++. ..+..+++|+.|++++|
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~--n~l~~~~~--------~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMAS--NQLKSVPD--------GIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCS--SCCSCCCT--------TTTTTCTTCCEEECCSS
T ss_pred hhhhhcccCCCEEECCCCccccCC----hhhhhcccCCCEEeCCC--CcCCCCCH--------HHhhcccCCcEEEecCC
Confidence 22 244555555555555433211 13455666666666666 34555544 23345667777777775
Q ss_pred C
Q 044882 741 P 741 (815)
Q Consensus 741 ~ 741 (815)
+
T Consensus 529 ~ 529 (570)
T 2z63_A 529 P 529 (570)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=318.58 Aligned_cols=483 Identities=16% Similarity=0.143 Sum_probs=257.3
Q ss_pred CcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 229 (815)
+++++|++++|.++.++ .+|.++++|++|++++|.++.+| ..++++++|++|++++| .+..+| ..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccc
Confidence 46899999999998774 57899999999999999999775 67899999999999999 566555 6789999999999
Q ss_pred ccCCCccccccc-ccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeee
Q 044882 230 NSNTKSLEEMPV-GIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLL 308 (815)
Q Consensus 230 l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 308 (815)
+++|. +..+|. .++++++|++|+ +
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~------------------------------------------------------L 131 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELN------------------------------------------------------V 131 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEE------------------------------------------------------C
T ss_pred ccccc-cccCCCccccccccccEEe------------------------------------------------------c
Confidence 99987 666654 366666666663 2
Q ss_pred EEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCc-cCCCCCCCCc----cEEEEecCCCCCCCCCCCCC
Q 044882 309 RWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPT-WFGDSSFSNL----VTLEFENCDMCTALPSVGQL 383 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L----~~L~L~~~~~~~~l~~l~~l 383 (815)
++|...+. ..+..+..+++|+.|+++++.+..++. .+. .+++| +.|++++|.+....+.....
T Consensus 132 ~~n~l~~~----------~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 132 AHNLIQSF----------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp CSSCCCCC----------CCCGGGGGCTTCCEEECTTSCCCEECGGGGH--HHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred CCCcccee----------cChhhhcccCCCCEEeCcCCccceecHHHcc--chhccchhhhhcccCCCCceecCHHHhcc
Confidence 22221000 011223445677778887777665543 222 24445 67777777766655533333
Q ss_pred CCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeec--cccccccccccCCCCCcccCC--CcceeeeccCcccccC
Q 044882 384 PSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFE--DMQEWEDWIPLRSGQGVEGFP--KLRELHILRCSKLKGT 459 (815)
Q Consensus 384 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~~ 459 (815)
.+|+.|++++|..-......... .+..++...+. .......... .....+..++ .++.+++.+++.+.+.
T Consensus 200 ~~L~~L~l~~n~~~~~~~~~~~~-----~l~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~l~~l~l~~l~l~~~~~~~~~ 273 (570)
T 2z63_A 200 IRLHKLTLRNNFDSLNVMKTCIQ-----GLAGLEVHRLVLGEFRNEGNLEK-FDKSALEGLCNLTIEEFRLAYLDYYLDD 273 (570)
T ss_dssp CEEEEEEEESCCSCTTHHHHHHH-----TTTTCEEEEEEEEECCCCSSCEE-CCTTTTGGGGGSEEEEEEEEETTEEESC
T ss_pred CcceeEecccccccccchhhhhc-----CccccceeeeccccccCchhhhh-cchhhhccccccchhhhhhhcchhhhhh
Confidence 36777777765211000000000 12222222221 1000000000 0000011111 1233333333233322
Q ss_pred CCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCC
Q 044882 460 FPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNS 539 (815)
Q Consensus 460 lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 539 (815)
.|. .+..+++|+.+++.++.... +....... +|++|++++|... .+|. ..++
T Consensus 274 ~~~------------------~~~~l~~L~~L~l~~~~l~~---l~~~~~~~--~L~~L~l~~n~~~-~l~~----~~l~ 325 (570)
T 2z63_A 274 IID------------------LFNCLTNVSSFSLVSVTIER---VKDFSYNF--GWQHLELVNCKFG-QFPT----LKLK 325 (570)
T ss_dssp STT------------------TTGGGTTCSEEEEESCEECS---CCBCCSCC--CCSEEEEESCBCS-SCCB----CBCS
T ss_pred chh------------------hhcCcCcccEEEecCccchh---hhhhhccC--CccEEeeccCccc-ccCc----cccc
Confidence 221 11223333333333332110 00111111 5666677666533 4443 3566
Q ss_pred CcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCc--ccccCCCCCCceEEeccCCCcccccCCC
Q 044882 540 SLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS--RSGLHNLRQLQEISIRRCGNLVSFPEGG 617 (815)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 617 (815)
+|+.|++++|.....++ ...+++|+.+++++|.+.+.. +..+..+++|++|++++|.... ++..+
T Consensus 326 ~L~~L~l~~n~~~~~~~------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 392 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFS------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392 (570)
T ss_dssp SCCEEEEESCBSCCBCC------------CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEE
T ss_pred ccCEEeCcCCccccccc------------cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccc
Confidence 77777777664332211 134556666666666665443 4556666777777777765333 33335
Q ss_pred CCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcCcCcccC
Q 044882 618 LPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHRF 695 (815)
Q Consensus 618 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 695 (815)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|......+.. ..+++|++|++++|....... +..+..+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l 469 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTEL 469 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc---hhhhhcc
Confidence 666677777777776655444 34566677777777776433333322 455666666666665432111 1345556
Q ss_pred CCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCC
Q 044882 696 SSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDC 764 (815)
Q Consensus 696 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c 764 (815)
++|+.|++++ +.+..++. ..+..+++|+.|++++| .++.+++ .+..+++|++|++++|
T Consensus 470 ~~L~~L~l~~--n~l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 470 RNLTFLDLSQ--CQLEQLSP--------TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEECCC--CccccCCh--------hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 6666666665 23333322 12344556666666663 3444433 4555566666666554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=306.01 Aligned_cols=436 Identities=17% Similarity=0.140 Sum_probs=218.2
Q ss_pred CcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..++++++|++|++++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 56777777777766654 4666677777777777776655 456667777777777776 56666665 6667777777
Q ss_pred cCCCcccc--cccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeee
Q 044882 231 SNTKSLEE--MPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLL 308 (815)
Q Consensus 231 ~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 308 (815)
++|. +.. +|..++++++|++|+ +
T Consensus 98 ~~N~-l~~~~~p~~~~~l~~L~~L~------------------------------------------------------L 122 (520)
T 2z7x_B 98 SFNA-FDALPICKEFGNMSQLKFLG------------------------------------------------------L 122 (520)
T ss_dssp CSSC-CSSCCCCGGGGGCTTCCEEE------------------------------------------------------E
T ss_pred cCCc-cccccchhhhccCCcceEEE------------------------------------------------------e
Confidence 7666 332 445566666666553 3
Q ss_pred EEccCCCCCCCchhhHHHHHhhcCCCCCCc--ccEEEeecCC---CCCCccCCCCCCC-CccEEEEecCCCCCCCC--CC
Q 044882 309 RWTLSTDGSSSREAEIEKDVLNMLKPHENL--EQFCISGYGG---TKFPTWFGDSSFS-NLVTLEFENCDMCTALP--SV 380 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~~~~~~~l~--~l 380 (815)
++|...+ ..+..+++| +.|+++++.+ ...|.++.. +. ....+++++|...+.++ .+
T Consensus 123 ~~n~l~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~ 186 (520)
T 2z7x_B 123 STTHLEK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSV 186 (520)
T ss_dssp EESSCCG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCC
T ss_pred cCcccch--------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhh
Confidence 3332210 011112233 5555555543 233444432 22 23355666777665554 46
Q ss_pred CCCCCcCeeeeccCCCc---eecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccc
Q 044882 381 GQLPSLKHLAVCGMSRV---KRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLK 457 (815)
Q Consensus 381 ~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 457 (815)
..+++|+.|++++|... ..+..... ....+++|+.|.+.++.-......... ... ..++|+.|++++| ++.
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~-~~~-~~~~L~~L~l~~n-~l~ 260 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILA---KLQTNPKLSNLTLNNIETTWNSFIRIL-QLV-WHTTVWYFSISNV-KLQ 260 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHH-HHH-HTSSCSEEEEEEE-EEE
T ss_pred hcccceeeccccccccccccceeecchh---hhccccchhhccccccccCHHHHHHHH-HHh-hhCcccEEEeecc-ccc
Confidence 67888888888776410 00000000 001133344443333211000000000 000 1224444444442 333
Q ss_pred cCCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcC-
Q 044882 458 GTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCG- 536 (815)
Q Consensus 458 ~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~- 536 (815)
+.+|..+... .....+.|+.+++++|.. .+|...+..
T Consensus 261 ~~~p~~~~~~----------------------------------------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~ 298 (520)
T 2z7x_B 261 GQLDFRDFDY----------------------------------------SGTSLKALSIHQVVSDVF--GFPQSYIYEI 298 (520)
T ss_dssp SCCCCCCCCC----------------------------------------CSCCCCEEEEEEEEECCC--CSCTHHHHHH
T ss_pred Cccccchhhc----------------------------------------ccccCceeEeccccccce--ecchhhhhcc
Confidence 3333221000 000114455666666654 444211101
Q ss_pred -CCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccC
Q 044882 537 -TNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE 615 (815)
Q Consensus 537 -~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 615 (815)
.-.+|+.|++++|.. .+.. ....+++|++|++++|......|.
T Consensus 299 ~~~~~L~~L~l~~n~l----------------------------------~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRM----------------------------------VHML--CPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp HHTCCCSEEEEESSCC----------------------------------CCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred cccCceeEEEcCCCcc----------------------------------cccc--chhhCCcccEEEeECCccChhhhh
Confidence 114566666666532 1100 012345555555555554444555
Q ss_pred CCCCCCCcceEEeccccccc--ccccccCCCCCcCcEEecCCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcC
Q 044882 616 GGLPCAKLTRLEISSCKRLE--ALPKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRG 691 (815)
Q Consensus 616 ~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 691 (815)
.+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.....+|. ...+++|++|++++|......+
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 416 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF------ 416 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG------
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh------
Confidence 55555556666665555543 3344455566666666666533322332 2345566666666665332111
Q ss_pred cccC-CCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcccccc-CCCCCCCCeeeeCCCC
Q 044882 692 FHRF-SSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSS-IVDLQNLASLYLGDCP 765 (815)
Q Consensus 692 ~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~i~~c~ 765 (815)
..+ ++|+.|++++ +.+..+|. .+..+++|+.|++++ +.++.+|.. +..+++|++|++++++
T Consensus 417 -~~l~~~L~~L~Ls~--N~l~~ip~---------~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 417 -RCLPPRIKVLDLHS--NKIKSIPK---------QVVKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -GSCCTTCCEEECCS--SCCCCCCG---------GGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hhhcccCCEEECCC--Ccccccch---------hhhcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 112 5677777776 45556654 113567788888888 467777775 7778888888888764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=318.35 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=72.7
Q ss_pred CcccEEEcCCCCcc-ccCccccCCccCCEEecCCCCCC-------------ccchhh---------------------h-
Q 044882 153 QRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTEIR-------------TLPESV---------------------N- 196 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-------------~lp~~i---------------------~- 196 (815)
.+++.|+|+++.+. .+|.++++|++|++|+|++|.+. .+|... +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57999999999998 78999999999999999999652 222111 1
Q ss_pred ------------------ccCCCcEEeccC-CccccccchhhcCcCCcceeeccCCCcccc------------------c
Q 044882 197 ------------------KLYNLHSLLLED-CDRLKKLCADMGNLAKLHHLKNSNTKSLEE------------------M 239 (815)
Q Consensus 197 ------------------~L~~L~~L~L~~-~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------------~ 239 (815)
....++.+.+.. +..+..+|..++++++|++|++++|. +.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence 011122222222 22566699999999999999999999 655 8
Q ss_pred ccccc--ccccccccc
Q 044882 240 PVGIG--RLTSLQTLC 253 (815)
Q Consensus 240 p~~i~--~L~~L~~L~ 253 (815)
|..++ ++++|++|+
T Consensus 240 p~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVE 255 (636)
T ss_dssp TSCCCGGGCTTCCEEE
T ss_pred chhhhhcccCCCCEEE
Confidence 88877 777777663
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=318.15 Aligned_cols=370 Identities=16% Similarity=0.176 Sum_probs=248.5
Q ss_pred CCCCccchhhhccCCCcEEeccCCccccc------------------cchhhc--CcCCcceeeccCCCccccccccccc
Q 044882 186 TEIRTLPESVNKLYNLHSLLLEDCDRLKK------------------LCADMG--NLAKLHHLKNSNTKSLEEMPVGIGR 245 (815)
Q Consensus 186 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~p~~i~~ 245 (815)
|.++.+|..++++++|++|+|++| .+.. +|..++ ++++|++|++++|...+.+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 455558999999999999999999 5665 899888 9999999999999878889988888
Q ss_pred ccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHH
Q 044882 246 LTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIE 325 (815)
Q Consensus 246 L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 325 (815)
+++|+.|+...... + . . ..++. .
T Consensus 514 L~~L~~L~Ls~N~~-----l------------------s---g--~~iP~-----------------------------~ 536 (876)
T 4ecn_A 514 LPELQSLNIACNRG-----I------------------S---A--AQLKA-----------------------------D 536 (876)
T ss_dssp CSSCCEEECTTCTT-----S------------------C---H--HHHHH-----------------------------H
T ss_pred CCCCCEEECcCCCC-----c------------------c---c--ccchH-----------------------------H
Confidence 88888884211100 0 0 0 00000 0
Q ss_pred HHHhh-cCCCCCCcccEEEeecCCCCCCc--cCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCc
Q 044882 326 KDVLN-MLKPHENLEQFCISGYGGTKFPT--WFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGS 402 (815)
Q Consensus 326 ~~~~~-~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 402 (815)
...+. .+..+++|+.|++++|.+..+|. ++. .+++|+.|++++|.+. .+|.++.+++|+.|++++|.. ..++.
T Consensus 537 i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~ 612 (876)
T 4ecn_A 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPE 612 (876)
T ss_dssp HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCT
T ss_pred HHhhhhcccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchH
Confidence 11111 44455677777777777777777 665 4788888888888876 666778888888888887742 22221
Q ss_pred cccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCC-cceeeeccCcccccCCCCCC-----CCccEEEEeccc
Q 044882 403 EFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPK-LRELHILRCSKLKGTFPEHL-----PALEMLVIEGCE 476 (815)
Q Consensus 403 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~lp~~l-----~~L~~L~l~~~~ 476 (815)
. +..+++ |+.|++++ +.++ .+|..+ ++|+.|++++|.
T Consensus 613 ~-----------------------------------l~~l~~~L~~L~Ls~-N~L~-~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 613 D-----------------------------------FCAFTDQVEGLGFSH-NKLK-YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp T-----------------------------------SCEECTTCCEEECCS-SCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred H-----------------------------------HhhccccCCEEECcC-CCCC-cCchhhhccccCCCCEEECcCCc
Confidence 1 114555 66666666 3455 455322 225555555543
Q ss_pred CccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhh
Q 044882 477 ELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIA 556 (815)
Q Consensus 477 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 556 (815)
... .++.++ ........++|+.|++++|... .+|...+ ..+++|+.|++++|. ++.++
T Consensus 656 l~g-~ip~l~------------------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~-~~l~~L~~L~Ls~N~-L~~ip 713 (876)
T 4ecn_A 656 IGS-EGRNIS------------------CSMDDYKGINASTVTLSYNEIQ-KFPTELF-ATGSPISTIILSNNL-MTSIP 713 (876)
T ss_dssp TTT-TSSSCS------------------SCTTTCCCCCEEEEECCSSCCC-SCCHHHH-HTTCCCSEEECCSCC-CSCCC
T ss_pred CCC-ccccch------------------hhhccccCCCcCEEEccCCcCC-ccCHHHH-ccCCCCCEEECCCCc-CCccC
Confidence 211 000000 0000001146888888888644 6676553 578899999999884 44444
Q ss_pred ccccccccceEecccccccccccccccccccCcccccC--CCCCCceEEeccCCCcccccCCCCCCCCcceEEecc----
Q 044882 557 AVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLH--NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISS---- 630 (815)
Q Consensus 557 ~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~---- 630 (815)
...+. ... -.+.+|++|+.|++++|.+. .+|..+. .+++|+.|+|++|.... +|..+..+++|+.|+|++
T Consensus 714 ~~~~~-~~~-~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 714 ENSLK-PKD-GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp TTSSS-CTT-SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred hHHhc-ccc-ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 33221 000 01345668899999999888 5566776 89999999999997554 888888999999999976
Q ss_pred --cccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchh
Q 044882 631 --CKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIW 682 (815)
Q Consensus 631 --~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 682 (815)
|.+.+.+|..+.++++|+.|++++|.. +.+|.. ..++|+.|++++|+...
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 777888899999999999999999954 777765 44799999999997543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=313.92 Aligned_cols=417 Identities=15% Similarity=0.181 Sum_probs=225.2
Q ss_pred CcccEEEcCCCCcc-ccCccccCCccCCEEec-CCCCCC-ccchh-----------------------------------
Q 044882 153 QRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNL-SGTEIR-TLPES----------------------------------- 194 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L-~~~~i~-~lp~~----------------------------------- 194 (815)
.+++.|+|+++.+. .+|.+|++|++|++|+| ++|.+. ..|-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999998 78999999999999999 777542 11100
Q ss_pred -----h-----------hccCCCcEEeccC--CccccccchhhcCcCCcceeeccCCCcccc------------------
Q 044882 195 -----V-----------NKLYNLHSLLLED--CDRLKKLCADMGNLAKLHHLKNSNTKSLEE------------------ 238 (815)
Q Consensus 195 -----i-----------~~L~~L~~L~L~~--~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------------ 238 (815)
+ .....++.+.+.. | .+..+|..+++|++|++|++++|. +..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccC-cccchhHHHhcCCCCCEEECcCCc-CCCCccccccccccccccccc
Confidence 0 1112333344433 4 566699999999999999999998 555
Q ss_pred cccccc--cccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCC
Q 044882 239 MPVGIG--RLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDG 316 (815)
Q Consensus 239 ~p~~i~--~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 316 (815)
+|..++ ++++|+.|+...... ....+..+..+++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l------------------------------~~~iP~~l~~L~~-------------- 516 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPN------------------------------MTQLPDFLYDLPE-------------- 516 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTT------------------------------CCSCCGGGGGCSS--------------
T ss_pred CChhhhhccCCCCCEEECcCCCC------------------------------CccChHHHhCCCC--------------
Confidence 787776 777777763221100 0000111222233
Q ss_pred CCCchhhHHHHHhhcCCCCCCcccEEEeecC-CC--CCCccCC-----CCCCCCccEEEEecCCCCCCCCC---CCCCCC
Q 044882 317 SSSREAEIEKDVLNMLKPHENLEQFCISGYG-GT--KFPTWFG-----DSSFSNLVTLEFENCDMCTALPS---VGQLPS 385 (815)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~--~~p~~~~-----~~~l~~L~~L~L~~~~~~~~l~~---l~~l~~ 385 (815)
|+.|++++|. +. .+|..+. ...+++|+.|++++|.+. .+|. ++.+++
T Consensus 517 ---------------------L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 517 ---------------------LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp ---------------------CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred ---------------------CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 3333333332 22 1232111 013456777777777666 4443 666667
Q ss_pred cCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCCCC
Q 044882 386 LKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLP 465 (815)
Q Consensus 386 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~ 465 (815)
|+.|++++|.. ..++ .+..+++|+.|++++ +.+. .+|..+.
T Consensus 575 L~~L~Ls~N~l-~~lp------------------------------------~~~~L~~L~~L~Ls~-N~l~-~lp~~l~ 615 (876)
T 4ecn_A 575 LGLLDCVHNKV-RHLE------------------------------------AFGTNVKLTDLKLDY-NQIE-EIPEDFC 615 (876)
T ss_dssp CCEEECTTSCC-CBCC------------------------------------CCCTTSEESEEECCS-SCCS-CCCTTSC
T ss_pred CCEEECCCCCc-ccch------------------------------------hhcCCCcceEEECcC-Cccc-cchHHHh
Confidence 77777766531 1221 111567777777777 4555 5553221
Q ss_pred CccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccc-cceEEEeccCCcccCchhhhcCCCCCcceE
Q 044882 466 ALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSV-LKKIEIRECDALKSLPEAWMCGTNSSLEDM 544 (815)
Q Consensus 466 ~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 544 (815)
.+ ++ |++|++++|. +..+|..+.....++|+.|
T Consensus 616 ~l---------------------------------------------~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 616 AF---------------------------------------------TDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp EE---------------------------------------------CTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEE
T ss_pred hc---------------------------------------------cccCCEEECcCCC-CCcCchhhhccccCCCCEE
Confidence 11 22 4444444443 2233433211122335566
Q ss_pred EEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCC-----
Q 044882 545 SIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLP----- 619 (815)
Q Consensus 545 ~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~----- 619 (815)
++++|.....++ .++..+ ....+.+|+.|++++|.+....+..+..+++|+.|++++|... .+|.....
T Consensus 650 ~Ls~N~l~g~ip--~l~~~l---~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 650 DFSYNKIGSEGR--NISCSM---DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp ECCSSCTTTTSS--SCSSCT---TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred ECcCCcCCCccc--cchhhh---ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 665554322211 011011 0112345666666666666443333446777777777777544 55554433
Q ss_pred ---CCCcceEEecccccccccccccC--CCCCcCcEEecCCCCCCCCCC-CCCCCCCceEEEcCCcchhhhhhhcCcCcc
Q 044882 620 ---CAKLTRLEISSCKRLEALPKGLH--NLTSLQELTIGRGVELPSLKE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFH 693 (815)
Q Consensus 620 ---l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 693 (815)
+++|++|+|++|.+. .+|..+. .+++|+.|++++|. +..+|. .+.+++|+.|++++|+.+.
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls----------- 790 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAE----------- 790 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTT-----------
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcc-----------
Confidence 227777777777755 5666665 77777777777773 333443 2455666666666553111
Q ss_pred cCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCC
Q 044882 694 RFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCP 765 (815)
Q Consensus 694 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 765 (815)
+ +.....+|. .+..+++|+.|+|++| .++.+|..+. ++|+.|+|++|+
T Consensus 791 -----------~-N~l~~~ip~---------~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 791 -----------G-NRILRQWPT---------GITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp -----------C-CBCCCCCCT---------TGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCT
T ss_pred -----------c-ccccccChH---------HHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCC
Confidence 0 111122221 2344566666666663 3466665543 566677776653
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-31 Score=302.71 Aligned_cols=98 Identities=26% Similarity=0.312 Sum_probs=65.5
Q ss_pred cccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccch-hhcCcCCcceeec
Q 044882 154 RLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLKN 230 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l 230 (815)
.+++|||++|.|+.+| .+|.++++|++|+|++|+|+.+| .+|++|++|++|+|++| .+..+|. .|++|++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEEC
Confidence 4677777777777664 45677777777777777777665 45677777777777776 5666654 3567777777777
Q ss_pred cCCCcccccccc-ccccccccccc
Q 044882 231 SNTKSLEEMPVG-IGRLTSLQTLC 253 (815)
Q Consensus 231 ~~~~~l~~~p~~-i~~L~~L~~L~ 253 (815)
++|. +..+|.. ++++++|++|+
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELN 154 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEE
T ss_pred CCCc-CCCCChhhhhcCcccCeec
Confidence 7776 5555544 66666666664
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=293.32 Aligned_cols=224 Identities=14% Similarity=0.149 Sum_probs=117.7
Q ss_pred ccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCch-hhhccccccccceEecccccccccccccccccccCcccc
Q 044882 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLT-YIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSG 592 (815)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~ 592 (815)
+|++|++++|...+.+|..++....++|+.|.+.++..-. .++...+. . +....+|+.+++++|.+.... .
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~-~-----~~~~~~L~~L~l~~n~~~~~~--~ 348 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY-S-----VFAEMNIKMLSISDTPFIHMV--C 348 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHH-H-----HHHTCCCSEEEEESSCCCCCC--C
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhh-h-----hhccCcceEEEccCCCccccc--C
Confidence 6777777777655556554321112344444433321110 11111000 0 001123455555555443221 1
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc--ccccccCCCCCcCcEEecCCCCCCCCCCC--CCCC
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE--ALPKGLHNLTSLQELTIGRGVELPSLKED--GLPT 668 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 668 (815)
...+++|++|++++|......|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.....++.. ..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 1456777777777777666666677777777777777777654 33455677777777777777433324432 4556
Q ss_pred CCceEEEcCCcchhhhhhhcCcCcccC-CCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcccc
Q 044882 669 NLQSLTIEGNMEIWKSMIERGRGFHRF-SSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLS 747 (815)
Q Consensus 669 ~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 747 (815)
+|++|++++|..... .+..+ ++|+.|++++ +.+..+|. .. ..+++|+.|++++ +.++.+|
T Consensus 429 ~L~~L~l~~n~l~~~-------~~~~l~~~L~~L~L~~--N~l~~ip~--------~~-~~l~~L~~L~L~~-N~l~~l~ 489 (562)
T 3a79_B 429 SILVLNLSSNMLTGS-------VFRCLPPKVKVLDLHN--NRIMSIPK--------DV-THLQALQELNVAS-NQLKSVP 489 (562)
T ss_dssp TCCEEECCSSCCCGG-------GGSSCCTTCSEEECCS--SCCCCCCT--------TT-TSSCCCSEEECCS-SCCCCCC
T ss_pred cCCEEECCCCCCCcc-------hhhhhcCcCCEEECCC--CcCcccCh--------hh-cCCCCCCEEECCC-CCCCCCC
Confidence 677777766654321 12222 4566666665 34555554 11 2445666666665 4455555
Q ss_pred cc-CCCCCCCCeeeeCCC
Q 044882 748 SS-IVDLQNLASLYLGDC 764 (815)
Q Consensus 748 ~~-~~~l~~L~~L~i~~c 764 (815)
.. +..+++|++|+++++
T Consensus 490 ~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp TTSTTTCTTCCCEECCSC
T ss_pred HHHHhcCCCCCEEEecCC
Confidence 54 555666666666554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-31 Score=292.95 Aligned_cols=452 Identities=15% Similarity=0.099 Sum_probs=307.3
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 233 (815)
++|++++|+++.+|..+. ++|++|++++|.+..+| ..++++++|++|++++| .+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 689999999999998876 89999999999999886 78999999999999999 56555 788999999999999999
Q ss_pred CcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccC
Q 044882 234 KSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLS 313 (815)
Q Consensus 234 ~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 313 (815)
. +..+|.. .+++|
T Consensus 80 ~-l~~lp~~--~l~~L---------------------------------------------------------------- 92 (520)
T 2z7x_B 80 K-LVKISCH--PTVNL---------------------------------------------------------------- 92 (520)
T ss_dssp C-CCEEECC--CCCCC----------------------------------------------------------------
T ss_pred c-eeecCcc--ccCCc----------------------------------------------------------------
Confidence 7 6566543 33333
Q ss_pred CCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCC--CCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCc--Cee
Q 044882 314 TDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTK--FPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSL--KHL 389 (815)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L--~~L 389 (815)
++|++++|.+.. +|..+. .+++|++|++++|.+.. ..+..+++| +.|
T Consensus 93 -------------------------~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 93 -------------------------KHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp -------------------------SEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred -------------------------cEEeccCCccccccchhhhc--cCCcceEEEecCcccch--hhccccccceeeEE
Confidence 333333343333 455555 47889999999888654 234555666 888
Q ss_pred eeccCCC--ceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC----CC
Q 044882 390 AVCGMSR--VKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP----EH 463 (815)
Q Consensus 390 ~l~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~ 463 (815)
++++|.. ....+. .+..++ . ....+++.++ .+.+.++ ..
T Consensus 144 ~l~~n~l~~~~~~~~---------~l~~l~------------------------~-~~l~l~l~~n-~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 144 LLVLGETYGEKEDPE---------GLQDFN------------------------T-ESLHIVFPTN-KEFHFILDVSVKT 188 (520)
T ss_dssp EEEECTTTTSSCCTT---------TTTTCC------------------------E-EEEEEECCSS-SCCCCCCCCCCTT
T ss_pred Eeecccccccccccc---------cccccc------------------------c-ceEEEEeccC-cchhhhhhhhhhc
Confidence 8877642 111100 011110 0 1224455553 3333444 34
Q ss_pred CCCccEEEEecccCc---cccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhh-cCCCC
Q 044882 464 LPALEMLVIEGCEEL---LVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWM-CGTNS 539 (815)
Q Consensus 464 l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~ 539 (815)
+++|+.+++.+|... ....+.++. ....++|+.|++++|......+.... ....+
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~~---------------------l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILAK---------------------LQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHHG---------------------GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred ccceeeccccccccccccceeecchhh---------------------hccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 566666766665310 000000000 01125788888888764433222211 01246
Q ss_pred CcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc-cccCCC---CCCceEEeccCCCcccccC
Q 044882 540 SLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR-SGLHNL---RQLQEISIRRCGNLVSFPE 615 (815)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~-~~~~~l---~~L~~L~l~~~~~l~~~~~ 615 (815)
+|++|++++|.....++. .+.......+++|+.++++.|.+ ..| ..+..+ ++|+.|++++|..... +
T Consensus 248 ~L~~L~l~~n~l~~~~p~-----~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~- 318 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDF-----RDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L- 318 (520)
T ss_dssp SCSEEEEEEEEEESCCCC-----CCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-
T ss_pred cccEEEeecccccCcccc-----chhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-c-
Confidence 899999999854333332 22111225677888888888887 333 344443 6799999999974332 2
Q ss_pred CCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC----CCCCCCCceEEEcCCcchhhhhhhcCcC
Q 044882 616 GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE----DGLPTNLQSLTIEGNMEIWKSMIERGRG 691 (815)
Q Consensus 616 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 691 (815)
....+++|++|++++|.+.+.+|..+..+++|++|++++| .++.++. .+.+++|++|++++|....... . ..
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~-~--~~ 394 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-K--GD 394 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG-G--CS
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccc-c--ch
Confidence 1257899999999999998888999999999999999999 4554322 3678999999999998654222 1 35
Q ss_pred cccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccC
Q 044882 692 FHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFP 771 (815)
Q Consensus 692 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~ 771 (815)
+..+++|+.|++++ +.....++. ..+++|+.|++++ +.++.+|..+..+++|++|++++| .++.+|
T Consensus 395 ~~~l~~L~~L~Ls~-N~l~~~~~~-----------~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 395 CSWTKSLLSLNMSS-NILTDTIFR-----------CLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp CCCCTTCCEEECCS-SCCCGGGGG-----------SCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred hccCccCCEEECcC-CCCCcchhh-----------hhcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 78899999999999 332233333 2337999999999 578899998889999999999995 788898
Q ss_pred CCC--CCCccceeeecCCcc
Q 044882 772 EKG--LPSSLLQLDIWGCPL 789 (815)
Q Consensus 772 ~~~--~~~~L~~L~i~~c~~ 789 (815)
... ..++|++|++++||-
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 742 357999999999873
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=298.72 Aligned_cols=517 Identities=17% Similarity=0.131 Sum_probs=300.6
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccch-hhcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 233 (815)
++.+.++.+++++|..+. .++++|||++|.|+.+| .+|+++++|++|+|++| .+..+|. .|++|++|++|++++|
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC
Confidence 456777778889998764 48999999999999997 68999999999999999 7887765 5899999999999999
Q ss_pred Ccccccccc-cccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEcc
Q 044882 234 KSLEEMPVG-IGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTL 312 (815)
Q Consensus 234 ~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 312 (815)
+ +..+|.+ ++++++|++|+...... ..+ ....+.++++|+.|++++|.
T Consensus 111 ~-l~~l~~~~f~~L~~L~~L~Ls~N~l------------------------~~l------~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 111 P-IQSLALGAFSGLSSLQKLVAVETNL------------------------ASL------ENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp C-CCEECGGGGTTCTTCCEEECTTSCC------------------------CCS------TTCCCTTCTTCCEEECCSSC
T ss_pred c-CCCCCHHHhcCCCCCCEEECCCCcC------------------------CCC------ChhhhhcCcccCeeccccCc
Confidence 8 8888865 78999999884322110 000 01113444555555555554
Q ss_pred CCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCcc-CCC--CCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 044882 313 STDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTW-FGD--SSFSNLVTLEFENCDMCTALPSVGQLPSLKHL 389 (815)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~--~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 389 (815)
..... ....+..+++|+.|++++|.+..++.. +.. ........++++.+.+....+.......+..+
T Consensus 160 l~~~~----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 160 IQSFK----------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CCCCC----------CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cccCC----------CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 31100 011122334444444444444333211 100 00011223334443333222222222233333
Q ss_pred eeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeecc--C---cccccCCC---
Q 044882 390 AVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILR--C---SKLKGTFP--- 461 (815)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~--c---~~l~~~lp--- 461 (815)
.+.++.....+....+. .++.++...+.. + ..+....+
T Consensus 230 ~l~~n~~~~~~~~~~~~----------------------------------~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQ----------------------------------GLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp EEESCCSSHHHHHHHHH----------------------------------TTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhcccccccccchhhc----------------------------------CCccccccccccccccccccccccccccc
Confidence 33332111111000000 112222111110 0 00000000
Q ss_pred CCCCCccEEEEecccC------ccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhc
Q 044882 462 EHLPALEMLVIEGCEE------LLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMC 535 (815)
Q Consensus 462 ~~l~~L~~L~l~~~~~------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 535 (815)
.....+....+..... ....+....+++.+.+.++...... ......+++.|++.+|... .++.
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~-~~~~---- 345 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-----DFSYNFGWQHLELVNCKFG-QFPT---- 345 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-----GGGSCCCCSEEEEESCEES-SCCC----
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-----ccccchhhhhhhccccccc-CcCc----
Confidence 0111122222111100 0111112333344443333221110 0112245667777766432 2221
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccccccc--CcccccCCCCCCceEEeccCCCcccc
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSS--SSRSGLHNLRQLQEISIRRCGNLVSF 613 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~ 613 (815)
..+..|+.+.+..+....... ..++++|+.++++.|.+.. ..+..+..+.+|+.|++..+. ....
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~ 412 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFS------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITM 412 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCC------------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEE
T ss_pred ccchhhhhcccccccCCCCcc------------cccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccc
Confidence 345667777777664322111 2245667777777776643 334455678899999999886 4455
Q ss_pred cCCCCCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcCcC
Q 044882 614 PEGGLPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERGRG 691 (815)
Q Consensus 614 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~ 691 (815)
+..+..+++|+.+++.+|......+ ..+..+++++.++++.|......+.. ..+++|+.|++++|.......+ ..
T Consensus 413 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~ 489 (635)
T 4g8a_A 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DI 489 (635)
T ss_dssp CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SC
T ss_pred cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc---hh
Confidence 6677888999999999888766554 35678899999999998544333332 5778999999999976553332 47
Q ss_pred cccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCccc
Q 044882 692 FHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYF 770 (815)
Q Consensus 692 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l 770 (815)
+..+++|+.|++++ +.+..+++ ..|..+++|++|+|++ +.++.+++ .+..+++|++|++++ ++++.+
T Consensus 490 ~~~l~~L~~L~Ls~--N~L~~l~~--------~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~ 557 (635)
T 4g8a_A 490 FTELRNLTFLDLSQ--CQLEQLSP--------TAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTS 557 (635)
T ss_dssp CTTCTTCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBC
T ss_pred hhhccccCEEECCC--CccCCcCh--------HHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCC
Confidence 88899999999998 57777765 4557789999999999 57877765 688999999999998 578777
Q ss_pred CCC---CCCCccceeeecCCc
Q 044882 771 PEK---GLPSSLLQLDIWGCP 788 (815)
Q Consensus 771 ~~~---~~~~~L~~L~i~~c~ 788 (815)
+.. .++++|+.|+++++|
T Consensus 558 ~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 558 KKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CSSCTTCCCTTCCEEECTTCC
T ss_pred CHHHHHhhhCcCCEEEeeCCC
Confidence 663 345789999998765
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=290.52 Aligned_cols=437 Identities=18% Similarity=0.118 Sum_probs=230.9
Q ss_pred ccccccCCCcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchhhcCc
Q 044882 145 ILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNL 222 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 222 (815)
+|..+. ++|++|++++|.++.+| .+|+++++|++|++++|.++.+ |..++++++|++|++++| .+..+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--cc
Confidence 444443 67888888888888775 5788888888888888888876 577888888888888888 67788876 78
Q ss_pred CCcceeeccCCCcccccc--cccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCC
Q 044882 223 AKLHHLKNSNTKSLEEMP--VGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGK 300 (815)
Q Consensus 223 ~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 300 (815)
++|++|++++|. +..+| ..++++++|++|+........ . .+..+
T Consensus 121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~--------------------------------~~~~l 166 (562)
T 3a79_B 121 ASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L--------------------------------DLLPV 166 (562)
T ss_dssp TTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-T--------------------------------TTGGG
T ss_pred ccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-C--------------------------------chhhh
Confidence 888888888887 55543 567777777777432211000 0 01111
Q ss_pred cCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCC--C-CCCccCCCCCCCCccEEEEecCCCCCCC
Q 044882 301 KNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGG--T-KFPTWFGDSSFSNLVTLEFENCDMCTAL 377 (815)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l 377 (815)
.+| +|+.|+++++.. . ..|.++.......+ .+++++|.+...+
T Consensus 167 ~~L---------------------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~ 212 (562)
T 3a79_B 167 AHL---------------------------------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQ 212 (562)
T ss_dssp TTS---------------------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCC
T ss_pred hhc---------------------------------eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhh
Confidence 122 224444444433 1 12332221001111 4455566655544
Q ss_pred C--CCCCCCCcCeeeeccCCC-ceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCc
Q 044882 378 P--SVGQLPSLKHLAVCGMSR-VKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCS 454 (815)
Q Consensus 378 ~--~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 454 (815)
+ .+..+++|+.+++++|.. ...+.... .. ....++|+.+.+.++..-........ ... ..++|++|++++|
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~--l~~l~~L~~L~L~~~~l~~~~~~~~~-~~~-~~~~L~~L~l~~n- 286 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFL-SE--LTRGPTLLNVTLQHIETTWKCSVKLF-QFF-WPRPVEYLNIYNL- 286 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHHHHH-HH--HHSCSSCEEEEEEEEEECHHHHHHHH-HHH-TTSSEEEEEEEEE-
T ss_pred hhhcccccceEEEecccccccccchHHHHH-HH--HhccCcceEEEecCCcCcHHHHHHHH-Hhh-hcccccEEEEecc-
Confidence 4 345667777777766521 00000000 00 01145566666554321110000000 000 2358999999984
Q ss_pred ccccCCCCCC-----CCccEEEEecccCccccCC--------CCCCcceEEeCCCCccccccccCCCCCCccccceEEEe
Q 044882 455 KLKGTFPEHL-----PALEMLVIEGCEELLVSVT--------SLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIR 521 (815)
Q Consensus 455 ~l~~~lp~~l-----~~L~~L~l~~~~~l~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 521 (815)
.+.+.+|..+ ++|+.|.+.++......++ ...+++.|+++++...... .....++|++|+++
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-----CPPSPSSFTFLNFT 361 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-----CCSSCCCCCEEECC
T ss_pred EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-----CccCCCCceEEECC
Confidence 6777788655 7777777765543222111 0134666666665432110 00223556666666
Q ss_pred ccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc-cccCCCCCCc
Q 044882 522 ECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR-SGLHNLRQLQ 600 (815)
Q Consensus 522 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~-~~~~~l~~L~ 600 (815)
+|...+..|..+ ..+++|+.|++++|. ++.++. +| -.+.++++|+.+++++|.+.+..| ..+..+++|+
T Consensus 362 ~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~--~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 362 QNVFTDSVFQGC--STLKRLQTLILQRNG-LKNFFK--VA-----LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp SSCCCTTTTTTC--CSCSSCCEEECCSSC-CCBTTH--HH-----HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCccccchhhhh--cccCCCCEEECCCCC-cCCccc--ch-----hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 665544444444 556666666666652 221110 00 012344555555666665555222 3355556666
Q ss_pred eEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC--CCCCCCCceEEEcCC
Q 044882 601 EISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQSLTIEGN 678 (815)
Q Consensus 601 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~ 678 (815)
+|++++|.....+|..+. ++|++|++++|.+. .+|..+..+++|++|++++| .++.+|. .+.+++|+.|++++|
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 666666654444444332 45666666666533 45554445666666666665 3334443 234555555666555
Q ss_pred c
Q 044882 679 M 679 (815)
Q Consensus 679 ~ 679 (815)
+
T Consensus 508 ~ 508 (562)
T 3a79_B 508 P 508 (562)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=275.76 Aligned_cols=416 Identities=20% Similarity=0.190 Sum_probs=178.4
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCC-ccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
+..+|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++.+|+++++.+|.. .+|++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 456788888888888888888888888888888888776 7788888877775555555511 3456666
Q ss_pred ccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeE
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 309 (815)
+++|. +..+|... ++|++| +++
T Consensus 78 l~~~~-l~~lp~~~---~~L~~L------------------------------------------------------~l~ 99 (454)
T 1jl5_A 78 LNNLG-LSSLPELP---PHLESL------------------------------------------------------VAS 99 (454)
T ss_dssp CTTSC-CSCCCSCC---TTCSEE------------------------------------------------------ECC
T ss_pred ecCCc-cccCCCCc---CCCCEE------------------------------------------------------Ecc
Confidence 66665 44444311 222222 222
Q ss_pred EccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 044882 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHL 389 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 389 (815)
+|...+ +. ..+++|+.|+++++.+..+|.. .++|++|++++|.+.+ +|.++.+++|++|
T Consensus 100 ~n~l~~-------------lp--~~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L 158 (454)
T 1jl5_A 100 CNSLTE-------------LP--ELPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKII 158 (454)
T ss_dssp SSCCSS-------------CC--CCCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEE
T ss_pred CCcCCc-------------cc--cccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEE
Confidence 221100 00 0013444444555444444432 2456666666665543 4456666666666
Q ss_pred eeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC--CCCCCc
Q 044882 390 AVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP--EHLPAL 467 (815)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp--~~l~~L 467 (815)
++++|. ++.++. .+++|++|++++ ++++ .+| ..+++|
T Consensus 159 ~l~~N~-l~~lp~--------------------------------------~~~~L~~L~L~~-n~l~-~l~~~~~l~~L 197 (454)
T 1jl5_A 159 DVDNNS-LKKLPD--------------------------------------LPPSLEFIAAGN-NQLE-ELPELQNLPFL 197 (454)
T ss_dssp ECCSSC-CSCCCC--------------------------------------CCTTCCEEECCS-SCCS-SCCCCTTCTTC
T ss_pred ECCCCc-CcccCC--------------------------------------CcccccEEECcC-CcCC-cCccccCCCCC
Confidence 666552 221110 122344444443 2333 122 112222
Q ss_pred cEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEe
Q 044882 468 EMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIR 547 (815)
Q Consensus 468 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 547 (815)
+.|++++| ... .++ ..+++|++|++++|. +..+|. + ..+++|++|+++
T Consensus 198 ~~L~l~~N---------------------~l~------~l~-~~~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~ 245 (454)
T 1jl5_A 198 TAIYADNN---------------------SLK------KLP-DLPLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYAD 245 (454)
T ss_dssp CEEECCSS---------------------CCS------SCC-CCCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECC
T ss_pred CEEECCCC---------------------cCC------cCC-CCcCcccEEECcCCc-CCcccc-c--CCCCCCCEEECC
Confidence 33322222 110 000 111356666666664 335553 2 678888999998
Q ss_pred ccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEE
Q 044882 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLE 627 (815)
Q Consensus 548 ~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 627 (815)
+|. ++.++. ..++|+.+++++|.+.+. |.. +++|++|++++|... .+|.. .++|++|+
T Consensus 246 ~N~-l~~l~~-------------~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~-~l~~~---~~~L~~L~ 303 (454)
T 1jl5_A 246 NNL-LKTLPD-------------LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFS-GLSEL---PPNLYYLN 303 (454)
T ss_dssp SSC-CSSCCS-------------CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS-EESCC---CTTCCEEE
T ss_pred CCc-CCcccc-------------cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccC-cccCc---CCcCCEEE
Confidence 874 222221 124566666666666652 222 367888888887633 33321 15788888
Q ss_pred ecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccC
Q 044882 628 ISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCD 707 (815)
Q Consensus 628 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 707 (815)
+++|.+.+ ++. ..++|++|++++| .++.+|.. +++|++|++++|.... . +. .+++|+.|++++
T Consensus 304 l~~N~l~~-i~~---~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~l~~--l---p~---~l~~L~~L~L~~-- 366 (454)
T 1jl5_A 304 ASSNEIRS-LCD---LPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNHLAE--V---PE---LPQNLKQLHVEY-- 366 (454)
T ss_dssp CCSSCCSE-ECC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSC--C---CC---CCTTCCEEECCS--
T ss_pred CcCCcCCc-ccC---CcCcCCEEECCCC-cccccccc--CCcCCEEECCCCcccc--c---cc---hhhhccEEECCC--
Confidence 88877543 221 1247788888887 44445442 5777888887775332 1 11 356777777776
Q ss_pred CCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCC
Q 044882 708 DDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGC 787 (815)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c 787 (815)
+.+..+|. .+..+..|. .++....+|. .+++|++|++++ +.++.+|. +|++++.|++.+|
T Consensus 367 N~l~~l~~------------ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~-N~l~~~~~--iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 367 NPLREFPD------------IPESVEDLR--MNSHLAEVPE---LPQNLKQLHVET-NPLREFPD--IPESVEDLRMNSE 426 (454)
T ss_dssp SCCSSCCC------------CCTTCCEEE--CCC----------------------------------------------
T ss_pred CCCCcCCC------------ChHHHHhhh--hccccccccc---ccCcCCEEECCC-CcCCcccc--chhhHhheeCcCc
Confidence 45544432 233444433 2344445553 248999999998 46666654 6788999998887
Q ss_pred c
Q 044882 788 P 788 (815)
Q Consensus 788 ~ 788 (815)
.
T Consensus 427 ~ 427 (454)
T 1jl5_A 427 R 427 (454)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=267.32 Aligned_cols=355 Identities=15% Similarity=0.126 Sum_probs=232.5
Q ss_pred cccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCc
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 225 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 225 (815)
+..+.++++|++|++++|.++.+| +++.+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence 335567888888888888888887 6888888888888888888876 788888888888888 677665 7888888
Q ss_pred ceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCce
Q 044882 226 HHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRE 305 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 305 (815)
++|++++|. +..+| ++.+++|++|+..
T Consensus 109 ~~L~L~~N~-l~~l~--~~~l~~L~~L~l~-------------------------------------------------- 135 (457)
T 3bz5_A 109 TYLNCDTNK-LTKLD--VSQNPLLTYLNCA-------------------------------------------------- 135 (457)
T ss_dssp CEEECCSSC-CSCCC--CTTCTTCCEEECT--------------------------------------------------
T ss_pred CEEECCCCc-CCeec--CCCCCcCCEEECC--------------------------------------------------
Confidence 888888887 55554 6666666666321
Q ss_pred eeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeec-CCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 044882 306 LLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGY-GGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLP 384 (815)
Q Consensus 306 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 384 (815)
.|..++ + .+..+++|+.|+++++ ....++ +. .+++|++|++++|.+.+ ++ ++.++
T Consensus 136 ----~N~l~~-------------l-~l~~l~~L~~L~l~~n~~~~~~~--~~--~l~~L~~L~ls~n~l~~-l~-l~~l~ 191 (457)
T 3bz5_A 136 ----RNTLTE-------------I-DVSHNTQLTELDCHLNKKITKLD--VT--PQTQLTTLDCSFNKITE-LD-VSQNK 191 (457)
T ss_dssp ----TSCCSC-------------C-CCTTCTTCCEEECTTCSCCCCCC--CT--TCTTCCEEECCSSCCCC-CC-CTTCT
T ss_pred ----CCccce-------------e-ccccCCcCCEEECCCCCcccccc--cc--cCCcCCEEECCCCccce-ec-cccCC
Confidence 111100 0 0112234444444444 122221 22 47788888888887665 44 77778
Q ss_pred CcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC-CC
Q 044882 385 SLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP-EH 463 (815)
Q Consensus 385 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~ 463 (815)
+|+.|++++|. ++.++ +..+++|+.|++++ +++++ +| ..
T Consensus 192 ~L~~L~l~~N~-l~~~~-------------------------------------l~~l~~L~~L~Ls~-N~l~~-ip~~~ 231 (457)
T 3bz5_A 192 LLNRLNCDTNN-ITKLD-------------------------------------LNQNIQLTFLDCSS-NKLTE-IDVTP 231 (457)
T ss_dssp TCCEEECCSSC-CSCCC-------------------------------------CTTCTTCSEEECCS-SCCSC-CCCTT
T ss_pred CCCEEECcCCc-CCeec-------------------------------------cccCCCCCEEECcC-Ccccc-cCccc
Confidence 88888887763 22221 11345555555555 34442 34 34
Q ss_pred CCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcce
Q 044882 464 LPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLED 543 (815)
Q Consensus 464 l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 543 (815)
+++|+.|++++|.........+++|+.|++++ .+|+.|++++|..++.+|. ..+++|+.
T Consensus 232 l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~~----~~l~~L~~ 290 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQA----EGCRKIKE 290 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEEC----TTCTTCCC
T ss_pred cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC-----------------CCCCEEECCCCccCCcccc----cccccCCE
Confidence 45555555555543333344455555555433 2577788888887777763 57899999
Q ss_pred EEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCc
Q 044882 544 MSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKL 623 (815)
Q Consensus 544 L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 623 (815)
|++++|..++.++. ..+ .|+.++++++++|+.+++++|.+++. .+.++++|+.|++++|+... ++.|
T Consensus 291 L~Ls~n~~l~~l~~-~~~-~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L 357 (457)
T 3bz5_A 291 LDVTHNTQLYLLDC-QAA-GITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSV 357 (457)
T ss_dssp CCCTTCTTCCEEEC-TTC-CCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTG
T ss_pred EECCCCcccceecc-CCC-cceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccc
Confidence 99999988777664 233 78888888888888888888888885 37788888888888886432 3466
Q ss_pred ceEEecccccccccccccCCCCCcCcEEecCCCCCCCCC
Q 044882 624 TRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLK 662 (815)
Q Consensus 624 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 662 (815)
+.|++++|.+.+. ..+..|+.+++++|.....+|
T Consensus 358 ~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 358 GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred ccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 7777777765544 244567777777775444444
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=267.92 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=56.2
Q ss_pred CcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCC-cc-chhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIR-TL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
++|++|+|++|.++.+ |..|+++++|++|++++|.+. .+ |..++++++|++|++++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5677777777777765 566777777777777777765 44 35677777777777777733333366677777777777
Q ss_pred ccCCC
Q 044882 230 NSNTK 234 (815)
Q Consensus 230 l~~~~ 234 (815)
+++|.
T Consensus 110 L~~n~ 114 (455)
T 3v47_A 110 LTQCN 114 (455)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 77776
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=259.50 Aligned_cols=118 Identities=20% Similarity=0.336 Sum_probs=69.6
Q ss_pred cCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCC
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYN 200 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 200 (815)
++++++.|.+.+.. ....+.+..+++|++|++++|.++.+|. ++++++|++|++++|.+..+|. ++++++
T Consensus 44 ~l~~l~~L~l~~~~--------i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 44 DLDQVTTLQADRLG--------IKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HHHTCCEEECCSSC--------CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred HhccccEEecCCCC--------CccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 34556666554432 1112335556666666666666666654 6666666666666666666655 666666
Q ss_pred CcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
|++|++++| .+..+|. ++++++|++|++++|. +..+| .++.+++|+.|
T Consensus 114 L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L 161 (466)
T 1o6v_A 114 LTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQL 161 (466)
T ss_dssp CCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEE
T ss_pred CCEEECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEe
Confidence 666666666 5555554 6666666666666665 44443 24455555444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=257.92 Aligned_cols=403 Identities=17% Similarity=0.145 Sum_probs=159.2
Q ss_pred CCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcc-ccCccccCCccC-------------CEEecCCCC
Q 044882 122 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPDSIGDLRYL-------------RYLNLSGTE 187 (815)
Q Consensus 122 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L-------------~~L~L~~~~ 187 (815)
.++||.|.+.++. + ..+|+.++++++|++|++++|.+. .+|.+++++++| ++|++++|.
T Consensus 10 ~~~L~~L~l~~n~------l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSN------L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccchhhhcccCc------h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 4555555554432 3 455566666666666666666655 556666666554 666666666
Q ss_pred CCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCccc
Q 044882 188 IRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRE 267 (815)
Q Consensus 188 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~ 267 (815)
++.+|.. .++|++|++++| .+..+|.. +++|++|++++|. +..+|... ++|++|+.....
T Consensus 83 l~~lp~~---~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~L~~n~--------- 142 (454)
T 1jl5_A 83 LSSLPEL---PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLGVSNNQ--------- 142 (454)
T ss_dssp CSCCCSC---CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEECCSSC---------
T ss_pred cccCCCC---cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEECcCCC---------
Confidence 6666542 256666666666 45555542 2566666666665 44443211 344444221110
Q ss_pred cccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecC
Q 044882 268 LKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYG 347 (815)
Q Consensus 268 l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 347 (815)
+.. ++ .+..+++|+.|++++|..++.. ...++|+.|++++|.
T Consensus 143 ---------------l~~-------lp-~~~~l~~L~~L~l~~N~l~~lp---------------~~~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 143 ---------------LEK-------LP-ELQNSSFLKIIDVDNNSLKKLP---------------DLPPSLEFIAAGNNQ 184 (454)
T ss_dssp ---------------CSS-------CC-CCTTCTTCCEEECCSSCCSCCC---------------CCCTTCCEEECCSSC
T ss_pred ---------------CCC-------Cc-ccCCCCCCCEEECCCCcCcccC---------------CCcccccEEECcCCc
Confidence 000 00 1344455555555555442100 012356666666666
Q ss_pred CCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeecccccc
Q 044882 348 GTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEW 427 (815)
Q Consensus 348 ~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 427 (815)
+..+|. +. .+++|++|++++|.+.+ +|.. .++|++|++++|. +..++. ++ .+++|+.|++.+.. +
T Consensus 185 l~~l~~-~~--~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~n~-l~~lp~--~~-----~l~~L~~L~l~~N~-l 249 (454)
T 1jl5_A 185 LEELPE-LQ--NLPFLTAIYADNNSLKK-LPDL--PLSLESIVAGNNI-LEELPE--LQ-----NLPFLTTIYADNNL-L 249 (454)
T ss_dssp CSSCCC-CT--TCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSC-CSSCCC--CT-----TCTTCCEEECCSSC-C
T ss_pred CCcCcc-cc--CCCCCCEEECCCCcCCc-CCCC--cCcccEEECcCCc-CCcccc--cC-----CCCCCCEEECCCCc-C
Confidence 655553 22 36666666666666543 2221 1456666666652 333321 11 14455555554421 1
Q ss_pred ccccccCCCCCcccCCCcceeeeccCcccccCCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCC
Q 044882 428 EDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGH 507 (815)
Q Consensus 428 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 507 (815)
..+.. .+++|+.|++++ +.++ .+|..+++|+.|++++|.... .....++|+.|++++|.... +
T Consensus 250 ~~l~~--------~~~~L~~L~l~~-N~l~-~l~~~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~N~l~~------i 312 (454)
T 1jl5_A 250 KTLPD--------LPPSLEALNVRD-NYLT-DLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRS------L 312 (454)
T ss_dssp SSCCS--------CCTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSE------E
T ss_pred Ccccc--------cccccCEEECCC-Cccc-ccCcccCcCCEEECcCCccCc-ccCcCCcCCEEECcCCcCCc------c
Confidence 11111 245677777766 3566 466556667777666654221 11112455555555543321 0
Q ss_pred CCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccccccc
Q 044882 508 PGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSS 587 (815)
Q Consensus 508 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~ 587 (815)
...+++|++|++++|.. ..+|. .+++|+.|++++|. ++.++. .+++|+.+++++|.+.+
T Consensus 313 -~~~~~~L~~L~Ls~N~l-~~lp~-----~~~~L~~L~L~~N~-l~~lp~-------------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 313 -CDLPPSLEELNVSNNKL-IELPA-----LPPRLERLIASFNH-LAEVPE-------------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp -CCCCTTCCEEECCSSCC-SCCCC-----CCTTCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSSCCSS
T ss_pred -cCCcCcCCEEECCCCcc-ccccc-----cCCcCCEEECCCCc-cccccc-------------hhhhccEEECCCCCCCc
Confidence 11234566666665542 22332 24556666665552 222211 12444555555555544
Q ss_pred --CcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc--ccccccCCCCCcCcEEecCCCCCC
Q 044882 588 --SSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE--ALPKGLHNLTSLQELTIGRGVELP 659 (815)
Q Consensus 588 --~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 659 (815)
.+|..+.. | +.|.....+|. .+++|++|++++|++.+ .+|. +++.|.+.+|....
T Consensus 372 l~~ip~~l~~------L--~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 372 FPDIPESVED------L--RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVD 430 (454)
T ss_dssp CCCCCTTCCE------E--ECCC-----------------------------------------------------
T ss_pred CCCChHHHHh------h--hhccccccccc---ccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCC
Confidence 33332221 1 12222333332 13789999999998766 5553 46667777774333
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=258.57 Aligned_cols=262 Identities=19% Similarity=0.192 Sum_probs=182.9
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.+.++++|+.|.+.++. +. .+ +.+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| +++
T Consensus 37 ~~~~l~~L~~L~Ls~n~------l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS------IT-DM-TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp EHHHHTTCCEEECCSSC------CC-CC-TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred ChhHcCCCCEEEccCCC------cc-cC-hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCC
Confidence 45577889999887653 22 22 36788999999999999999886 889999999999999999886 889
Q ss_pred cCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGT 277 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 277 (815)
+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++.+++|++|+........
T Consensus 105 l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~---------------- 162 (457)
T 3bz5_A 105 LTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT---------------- 162 (457)
T ss_dssp CTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC----------------
T ss_pred CCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc----------------
Confidence 999999999999 777776 8999999999999998 66664 7778888877432111000
Q ss_pred eeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCC
Q 044882 278 LNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGD 357 (815)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 357 (815)
.. .+..+++|+.|++++|..++ ++ +..+++|+.|+++++.+..++ +.
T Consensus 163 ----------~~------~~~~l~~L~~L~ls~n~l~~-------------l~-l~~l~~L~~L~l~~N~l~~~~--l~- 209 (457)
T 3bz5_A 163 ----------KL------DVTPQTQLTTLDCSFNKITE-------------LD-VSQNKLLNRLNCDTNNITKLD--LN- 209 (457)
T ss_dssp ----------CC------CCTTCTTCCEEECCSSCCCC-------------CC-CTTCTTCCEEECCSSCCSCCC--CT-
T ss_pred ----------cc------ccccCCcCCEEECCCCccce-------------ec-cccCCCCCEEECcCCcCCeec--cc-
Confidence 00 14456677788887776521 11 456677888888888777663 32
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCC
Q 044882 358 SSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQ 437 (815)
Q Consensus 358 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 437 (815)
.+++|++|++++|.+.+ +| ++.+++|+.|++++|. ++.++ ...+++|+.|.+.
T Consensus 210 -~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~--------~~~l~~L~~L~l~--------------- 262 (457)
T 3bz5_A 210 -QNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LTELD--------VSTLSKLTTLHCI--------------- 262 (457)
T ss_dssp -TCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECT---------------
T ss_pred -cCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc-CCCcC--------HHHCCCCCEEecc---------------
Confidence 57888888888888766 45 7778888888888873 33332 1125666666542
Q ss_pred CcccCCCcceeeeccCcccccCCC-CCCCCccEEEEecccCc
Q 044882 438 GVEGFPKLRELHILRCSKLKGTFP-EHLPALEMLVIEGCEEL 478 (815)
Q Consensus 438 ~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~~l 478 (815)
..+|+.|++++|..+. .+| ..+++|+.|++++|..+
T Consensus 263 ----~n~L~~L~l~~n~~~~-~~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 263 ----QTDLLEIDLTHNTQLI-YFQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp ----TCCCSCCCCTTCTTCC-EEECTTCTTCCCCCCTTCTTC
T ss_pred ----CCCCCEEECCCCccCC-cccccccccCCEEECCCCccc
Confidence 3456666776654332 444 34556666666555433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=256.25 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=138.9
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
.+++++.|+++++.+..+|. +..+++|++|++++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 46778999999998888874 7888999999999999988877 889999999999998 6777776 889999999999
Q ss_pred cCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEE
Q 044882 231 SNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRW 310 (815)
Q Consensus 231 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 310 (815)
++|. +..+|. ++++++|++|+.......... .+..+++|+.|.+..
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~--------------------------------~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS--------------------------------ALSGLTSLQQLSFGN 165 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG--------------------------------GGTTCTTCSEEEEEE
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCccCCCh--------------------------------hhccCCcccEeecCC
Confidence 9987 777765 888888888854433211110 144556667777653
Q ss_pred ccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeee
Q 044882 311 TLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLA 390 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 390 (815)
+.. ....+..+++|+.|+++++....++. +. .+++|++|++++|.+.+..+ ++.+++|+.|+
T Consensus 166 ~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 227 (466)
T 1o6v_A 166 QVT--------------DLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP-LGILTNLDELS 227 (466)
T ss_dssp SCC--------------CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred ccc--------------CchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc-ccccCCCCEEE
Confidence 211 11225566778888888877766654 22 47888888888888765444 66788888888
Q ss_pred eccCC
Q 044882 391 VCGMS 395 (815)
Q Consensus 391 l~~~~ 395 (815)
+++|.
T Consensus 228 l~~n~ 232 (466)
T 1o6v_A 228 LNGNQ 232 (466)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 88873
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=249.77 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=75.5
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 232 (815)
-+.++.+++.++.+|. +. ++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..++++++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3578889999999987 43 7999999999999977 688999999999999999544355 56689999999999999
Q ss_pred CCcccccccccccccccccc
Q 044882 233 TKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 233 ~~~l~~~p~~i~~L~~L~~L 252 (815)
|......|..++++++|++|
T Consensus 89 n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEE
T ss_pred CccCccChhhccCcccCCEE
Confidence 98333335556666655555
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=245.90 Aligned_cols=84 Identities=23% Similarity=0.139 Sum_probs=48.7
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEe
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 652 (815)
++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 34444444444444444445556666666666666655555556666666666666666655544445566666666666
Q ss_pred cCCC
Q 044882 653 GRGV 656 (815)
Q Consensus 653 ~~~~ 656 (815)
++|+
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6664
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=235.23 Aligned_cols=86 Identities=21% Similarity=0.424 Sum_probs=67.1
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .++++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 466778888888888887764 7788888888888888888776 888888888888888 676766 488888888888
Q ss_pred ccCCCcccccc
Q 044882 230 NSNTKSLEEMP 240 (815)
Q Consensus 230 l~~~~~l~~~p 240 (815)
+++|. +..+|
T Consensus 117 l~~n~-i~~~~ 126 (347)
T 4fmz_A 117 LNEDN-ISDIS 126 (347)
T ss_dssp CTTSC-CCCCG
T ss_pred CcCCc-ccCch
Confidence 88876 44443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=237.84 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=87.6
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
..+++|+.|++++|.+.+..+..+..+++|++|++++|. +..+|..+..+++|++|++++|++. .+|..+..+++|++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCE
Confidence 345566666666777777677788899999999999996 5567777788899999999999865 56777888999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCceEEEcCCcchhh
Q 044882 650 LTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWK 683 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 683 (815)
|++++|+ ++.++ ...+++|+.|++++|+....
T Consensus 323 L~L~~N~-i~~~~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 323 LYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCc-cceeC-chhhccCCEEEcCCCCccch
Confidence 9999994 55554 56778999999999986543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-25 Score=230.85 Aligned_cols=122 Identities=18% Similarity=0.336 Sum_probs=96.9
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
....+++++.|.+.++. ....+.+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+++
T Consensus 39 ~~~~l~~L~~L~l~~~~--------i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~ 108 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK--------VASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQN 108 (347)
T ss_dssp CHHHHTTCSEEECCSSC--------CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred cchhcccccEEEEeCCc--------cccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcC
Confidence 34567888999887654 1223457889999999999999999877 999999999999999999886 6999
Q ss_pred cCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+++|++|++++| .+..+|. +..+++|++|++++|.....++ .++.+++|++|
T Consensus 109 l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 109 LTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp CTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred CCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 999999999999 7888887 9999999999999997444332 24444443333
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=241.83 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=89.0
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
..+++|+.|++++|.+.+..|..+..+++|+.|++++|. +..+|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCE
Confidence 445667777777777777777888899999999999996 4557777788999999999999866 67777888999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCceEEEcCCcchhh
Q 044882 650 LTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWK 683 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 683 (815)
|++++|. +..++ .+.+++|+.|++++|+....
T Consensus 329 L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 329 LYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCC-CCCcC-hhhcCCCCEEEeeCCCCCCh
Confidence 9999995 44444 56778999999999986543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=229.08 Aligned_cols=310 Identities=17% Similarity=0.197 Sum_probs=204.2
Q ss_pred cEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcce
Q 044882 340 QFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLET 418 (815)
Q Consensus 340 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 418 (815)
.++..+...+.+|..+ .++++.|++++|.+....+ .+..+++|++|++++| .+..+....+
T Consensus 15 ~v~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~------------- 76 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAF------------- 76 (477)
T ss_dssp EEECCSCCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTT-------------
T ss_pred EEEeCCCCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhh-------------
Confidence 3444555666777654 3578888888888776655 6788888888888887 3333322221
Q ss_pred eeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC----CCCCCccEEEEecccCccccCCCCCCcceEEeC
Q 044882 419 LRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP----EHLPALEMLVIEGCEELLVSVTSLPALCKFISG 494 (815)
Q Consensus 419 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 494 (815)
..+++|+.|++++ ++++ .+| ..+++|+.|++++|.........
T Consensus 77 ---------------------~~l~~L~~L~L~~-n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------- 123 (477)
T 2id5_A 77 ---------------------NNLFNLRTLGLRS-NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM---------- 123 (477)
T ss_dssp ---------------------TTCTTCCEEECCS-SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTT----------
T ss_pred ---------------------hCCccCCEEECCC-CcCC-ccCcccccCCCCCCEEECCCCccccCChhH----------
Confidence 2456666666666 3455 333 23345555555444321110000
Q ss_pred CCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccc
Q 044882 495 GCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDN 574 (815)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~ 574 (815)
....++|++|++++|......+..+ ..+++|++|++++|. ++.++.. .+.++++
T Consensus 124 --------------~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~---------~l~~l~~ 177 (477)
T 2id5_A 124 --------------FQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCN-LTSIPTE---------ALSHLHG 177 (477)
T ss_dssp --------------TTTCTTCCEEEECCTTCCEECTTSS--TTCTTCCEEEEESCC-CSSCCHH---------HHTTCTT
T ss_pred --------------ccccccCCEEECCCCccceeChhhc--cCCCCCCEEECCCCc-CcccChh---------HhcccCC
Confidence 1111567777777776444444444 678899999999883 3322211 2456778
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
|+.|++++|.+.+..+..+..+++|++|++++|+....+|.......+|++|++++|.+....+..+..+++|++|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 88888888888887777888888899999988888888887777777889999998886654445678888899999988
Q ss_pred CCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 655 GVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 655 ~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
|. ++.++. ...+++|++|++++|...... +..+.++++|+.|++++ +.+..++. ..+..+++|
T Consensus 258 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~--N~l~~~~~--------~~~~~l~~L 322 (477)
T 2id5_A 258 NP-ISTIEGSMLHELLRLQEIQLVGGQLAVVE----PYAFRGLNYLRVLNVSG--NQLTTLEE--------SVFHSVGNL 322 (477)
T ss_dssp SC-CCEECTTSCTTCTTCCEEECCSSCCSEEC----TTTBTTCTTCCEEECCS--SCCSCCCG--------GGBSCGGGC
T ss_pred Cc-CCccChhhccccccCCEEECCCCccceEC----HHHhcCcccCCEEECCC--CcCceeCH--------hHcCCCccc
Confidence 84 444443 256778888888888654422 24677788888888887 56666665 334567788
Q ss_pred ceEEecCCC
Q 044882 733 TSLWISGFP 741 (815)
Q Consensus 733 ~~L~l~~c~ 741 (815)
+.|++++|+
T Consensus 323 ~~L~l~~N~ 331 (477)
T 2id5_A 323 ETLILDSNP 331 (477)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 888888843
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=223.01 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=66.9
Q ss_pred CCCcccEEEcCCCCccccCcc-ccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcce
Q 044882 151 KLQRLRAFSLRGYHIFELPDS-IGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHH 227 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~ 227 (815)
.+.++++|+++++.++.+|.. +..+++|++|++++|.+..+| ..++++++|++|++++| .+..+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 467788888888888888765 577888888888888888776 47788888888888888 555554 44678888888
Q ss_pred eeccCCCccccccc
Q 044882 228 LKNSNTKSLEEMPV 241 (815)
Q Consensus 228 L~l~~~~~l~~~p~ 241 (815)
|++++|. +..+|.
T Consensus 122 L~L~~n~-l~~l~~ 134 (390)
T 3o6n_A 122 LVLERND-LSSLPR 134 (390)
T ss_dssp EECCSSC-CCCCCT
T ss_pred EECCCCc-cCcCCH
Confidence 8888776 444443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=228.85 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=70.2
Q ss_pred ccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC-CCCCCC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED-GLPTNL 670 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L 670 (815)
.+..+++|+.|++++|......|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|. +..+|.. +.+++|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L 326 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL 326 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCccCcccccCCCC
Confidence 56678888888888888777777778888888888888887654 56666778888888888884 3344422 345566
Q ss_pred ceEEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 671 QSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 671 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
+.|++++|.... ..+..+++|+.|++++
T Consensus 327 ~~L~L~~N~l~~-------~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 327 ENLYLDHNSIVT-------LKLSTHHTLKNLTLSH 354 (597)
T ss_dssp SEEECCSSCCCC-------CCCCTTCCCSEEECCS
T ss_pred CEEECCCCCCCC-------cChhhcCCCCEEEeeC
Confidence 666666665322 1234445555555554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-22 Score=205.72 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=70.1
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCcccccc-chhhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 230 (815)
.++++++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++| .+..+ |..++++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 468999999999999987765 689999999999998874 7899999999999998 55555 778899999999999
Q ss_pred cCCCccccccc
Q 044882 231 SNTKSLEEMPV 241 (815)
Q Consensus 231 ~~~~~l~~~p~ 241 (815)
++|. +..+|.
T Consensus 108 s~n~-l~~l~~ 117 (330)
T 1xku_A 108 SKNQ-LKELPE 117 (330)
T ss_dssp CSSC-CSBCCS
T ss_pred CCCc-CCccCh
Confidence 8887 555543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=202.85 Aligned_cols=86 Identities=24% Similarity=0.352 Sum_probs=70.7
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 230 (815)
.++++++++++.++.+|..+. ++|++|++++|.+..+| ..++++++|++|++++| .+..+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 368999999999999988774 68999999999998775 57899999999999998 55555 777899999999999
Q ss_pred cCCCcccccccc
Q 044882 231 SNTKSLEEMPVG 242 (815)
Q Consensus 231 ~~~~~l~~~p~~ 242 (815)
++|. +..+|..
T Consensus 110 ~~n~-l~~l~~~ 120 (332)
T 2ft3_A 110 SKNH-LVEIPPN 120 (332)
T ss_dssp CSSC-CCSCCSS
T ss_pred CCCc-CCccCcc
Confidence 9887 5555543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=208.13 Aligned_cols=94 Identities=22% Similarity=0.351 Sum_probs=85.7
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
...++++|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45779999999999999999999999999999999999999999999999999999999 77799999999999999999
Q ss_pred cCCCccccccccccc
Q 044882 231 SNTKSLEEMPVGIGR 245 (815)
Q Consensus 231 ~~~~~l~~~p~~i~~ 245 (815)
++|...+.+|..++.
T Consensus 158 ~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 158 RACPELTELPEPLAS 172 (328)
T ss_dssp EEETTCCCCCSCSEE
T ss_pred CCCCCccccChhHhh
Confidence 998877788776543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=201.86 Aligned_cols=124 Identities=24% Similarity=0.424 Sum_probs=103.8
Q ss_pred cCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCC
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYN 200 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 200 (815)
...+++.|.+.++. +. .+|+.+.++++|++|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++
T Consensus 79 ~~~~l~~L~L~~n~------l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 79 TQPGRVALELRSVP------LP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp TSTTCCEEEEESSC------CS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred cccceeEEEccCCC------ch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 45788888887754 33 677788889999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCCccccccchhhcC---------cCCcceeeccCCCcccccccccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCADMGN---------LAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
|++|++++|..+..+|..++. +++|++|++++|. +..+|..++++++|++|
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE
Confidence 999999998788899987765 8888888888876 55666655555444444
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-22 Score=204.20 Aligned_cols=251 Identities=13% Similarity=0.096 Sum_probs=199.2
Q ss_pred cccceEEEeccCCcc--cCchhhhcCCCCCcceEEEeccCCch-hhhccccccccceEecccccccccccccccccccCc
Q 044882 513 SVLKKIEIRECDALK--SLPEAWMCGTNSSLEDMSIRQCHSLT-YIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS 589 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~ 589 (815)
.+++.|++++|...+ .+|..+ ..+++|++|+++++..+. .++. . +.++++|++|++++|.+.+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~-----~-----l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPP-----A-----IAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCG-----G-----GGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhH--hCCCCCCeeeCCCCCcccccCCh-----h-----HhcCCCCCEEECcCCeeCCcC
Confidence 478899999998766 677766 789999999999633333 2221 2 457789999999999999999
Q ss_pred ccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCC-CcCcEEecCCCCCCCCCCC-CCC
Q 044882 590 RSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLT-SLQELTIGRGVELPSLKED-GLP 667 (815)
Q Consensus 590 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~-~~~ 667 (815)
|..+.++++|++|++++|.....+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.....+|.. +.+
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 99999999999999999987778888888999999999999998888999998888 9999999999644344433 344
Q ss_pred CCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcccc
Q 044882 668 TNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLS 747 (815)
Q Consensus 668 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 747 (815)
+ |++|++++|....... ..+..+++|+.|++++ +.+...+. .+..+++|++|++++|.....+|
T Consensus 198 ~-L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~--N~l~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAK--NSLAFDLG---------KVGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp C-CSEEECCSSEEEECCG----GGCCTTSCCSEEECCS--SEECCBGG---------GCCCCTTCCEEECCSSCCEECCC
T ss_pred c-ccEEECcCCcccCcCC----HHHhcCCCCCEEECCC--CceeeecC---------cccccCCCCEEECcCCcccCcCC
Confidence 4 9999999997654222 4678899999999998 44443322 13567899999999965445888
Q ss_pred ccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCcchH
Q 044882 748 SSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIE 791 (815)
Q Consensus 748 ~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~ 791 (815)
..+..+++|++|++++|+--..+|..+..++|+.|+++++|.+.
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 89999999999999996444477876667899999999998654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=196.64 Aligned_cols=259 Identities=15% Similarity=0.194 Sum_probs=155.0
Q ss_pred CcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCC
Q 044882 337 NLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLC 415 (815)
Q Consensus 337 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 415 (815)
+++.++++++....+|..+ .++++.|++++|.+.+..+ .++.+++|++|++++|. +..+...
T Consensus 32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------ 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPG------------ 94 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTT------------
T ss_pred CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHH------------
Confidence 4666777777777777654 3578888888888766555 67788888888888763 3322111
Q ss_pred cceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCC-CCCCccEEEEecccCccc---cCCCCCCcceE
Q 044882 416 LETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPE-HLPALEMLVIEGCEELLV---SVTSLPALCKF 491 (815)
Q Consensus 416 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L 491 (815)
.+..+++|++|++++ +.++ .+|. ..++|++|++++|..... .+..+
T Consensus 95 ----------------------~~~~l~~L~~L~Ls~-n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l------ 144 (330)
T 1xku_A 95 ----------------------AFAPLVKLERLYLSK-NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGL------ 144 (330)
T ss_dssp ----------------------TTTTCTTCCEEECCS-SCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTC------
T ss_pred ----------------------HhcCCCCCCEEECCC-CcCC-ccChhhcccccEEECCCCcccccCHhHhcCC------
Confidence 122466677777766 3555 4552 234555555555432110 11122
Q ss_pred EeCCCCccccccccCCCCCCccccceEEEeccCCcc--cCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEec
Q 044882 492 ISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALK--SLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLI 569 (815)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l 569 (815)
++|++|++++|.... ..+..+ ..+++|+.|++++|. ++.++. .
T Consensus 145 ---------------------~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~-l~~l~~-----~------ 189 (330)
T 1xku_A 145 ---------------------NQMIVVELGTNPLKSSGIENGAF--QGMKKLSYIRIADTN-ITTIPQ-----G------ 189 (330)
T ss_dssp ---------------------TTCCEEECCSSCCCGGGBCTTGG--GGCTTCCEEECCSSC-CCSCCS-----S------
T ss_pred ---------------------ccccEEECCCCcCCccCcChhhc--cCCCCcCEEECCCCc-cccCCc-----c------
Confidence 344444554444321 222222 566777777777763 222221 1
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
-.++|+.+++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 190 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 190 -LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267 (330)
T ss_dssp -CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred -ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE
Confidence 1146666777777777766777777888888888888755555556777778888888888754 66777777888888
Q ss_pred EEecCCCCCCCCCCCCC--------CCCCceEEEcCCcc
Q 044882 650 LTIGRGVELPSLKEDGL--------PTNLQSLTIEGNME 680 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~ 680 (815)
|++++| .++.++.... .++++.|++++|+.
T Consensus 268 L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 268 VYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 888887 4444443211 24566666666653
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=196.69 Aligned_cols=281 Identities=16% Similarity=0.158 Sum_probs=161.6
Q ss_pred CcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCC
Q 044882 337 NLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLC 415 (815)
Q Consensus 337 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 415 (815)
+++.++++++....+|..+ .++++.|++++|.+....+ .+..+++|++|++++|. +..+....+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---------- 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF---------- 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS----------
T ss_pred cCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh----------
Confidence 4677777777777787755 3678888888888766555 67888888888888873 333322221
Q ss_pred cceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCC-CCCCccEEEEecccCccc---cCCCCCCcceE
Q 044882 416 LETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPE-HLPALEMLVIEGCEELLV---SVTSLPALCKF 491 (815)
Q Consensus 416 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L 491 (815)
..+++|++|++++ +.++ .+|. ..++|++|++++|..... .+..+
T Consensus 99 ------------------------~~l~~L~~L~L~~-n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l------ 146 (332)
T 2ft3_A 99 ------------------------SPLRKLQKLYISK-NHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGL------ 146 (332)
T ss_dssp ------------------------TTCTTCCEEECCS-SCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSC------
T ss_pred ------------------------hCcCCCCEEECCC-CcCC-ccCccccccCCEEECCCCccCccCHhHhCCC------
Confidence 2466777777766 3555 4552 224555665555432110 01112
Q ss_pred EeCCCCccccccccCCCCCCccccceEEEeccCCcc--cCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEec
Q 044882 492 ISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALK--SLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLI 569 (815)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l 569 (815)
++|++|++++|.... ..+..+ ..+ +|+.|++++|. ++.++. .
T Consensus 147 ---------------------~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~-l~~l~~-----~------ 190 (332)
T 2ft3_A 147 ---------------------RNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAK-LTGIPK-----D------ 190 (332)
T ss_dssp ---------------------SSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSB-CSSCCS-----S------
T ss_pred ---------------------ccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCCC-CCccCc-----c------
Confidence 344555555544321 122222 333 66777777663 222221 1
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
-.++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 191 -~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 191 -LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268 (332)
T ss_dssp -SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred -ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence 1146677777777777777677777777778888777655554556667777778888777754 66666777777778
Q ss_pred EEecCCCCCCCCCCCC--------CCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 650 LTIGRGVELPSLKEDG--------LPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
|++++| .++.++... ..++|+.|++++|+........ ..+..+++|+.+++++
T Consensus 269 L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 269 VYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGN 329 (332)
T ss_dssp EECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC--
T ss_pred EECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc--ccccccchhhhhhccc
Confidence 887777 344443221 1345666666666533211111 2344444455444444
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=210.11 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=63.9
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccC
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 232 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 232 (815)
..+++|+++++.++.+|..+. ++|++|++++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 347889999999888888776 789999999998888887 5788899999988 6777877 678888888888
Q ss_pred CCccccccc
Q 044882 233 TKSLEEMPV 241 (815)
Q Consensus 233 ~~~l~~~p~ 241 (815)
|. +..+|.
T Consensus 111 N~-l~~l~~ 118 (622)
T 3g06_A 111 NP-LTHLPA 118 (622)
T ss_dssp CC-CCCCCC
T ss_pred Cc-CCCCCC
Confidence 86 555543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-20 Score=193.73 Aligned_cols=87 Identities=18% Similarity=0.286 Sum_probs=64.6
Q ss_pred CCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCcccccc-chhhcCcCCcceee
Q 044882 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLK 229 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 229 (815)
++...+.+++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++| .+..+ |..++++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEE
Confidence 3444567888888888887665 488888888888887774 7888888888888888 55555 45688888888888
Q ss_pred ccCCCcccccccc
Q 044882 230 NSNTKSLEEMPVG 242 (815)
Q Consensus 230 l~~~~~l~~~p~~ 242 (815)
+++|. +..+|..
T Consensus 107 Ls~n~-l~~~~~~ 118 (353)
T 2z80_A 107 LSYNY-LSNLSSS 118 (353)
T ss_dssp CCSSC-CSSCCHH
T ss_pred CCCCc-CCcCCHh
Confidence 88886 5555443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-21 Score=222.37 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCccCCEEecCCCCCC-ccchhhhcc--CCCcEEeccCCcccc--ccchhhcCcCCcceeeccCCC
Q 044882 174 DLRYLRYLNLSGTEIR-TLPESVNKL--YNLHSLLLEDCDRLK--KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 174 ~l~~L~~L~L~~~~i~-~lp~~i~~L--~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~ 234 (815)
.+++|++|+|++|.++ ..+..++.+ .+|++|++++|..+. .++..+.++++|++|++++|.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS 175 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence 5566666666666655 223445443 336666666663221 223323456666666666665
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=194.74 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=160.5
Q ss_pred cccceEEEec-cCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCccc
Q 044882 513 SVLKKIEIRE-CDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRS 591 (815)
Q Consensus 513 ~~L~~L~l~~-~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~ 591 (815)
++|++|++++ |...+.+|..+ ..+++|++|++++|.....++. .+.++++|+.|++++|.+.+..|.
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPD----------FLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCG----------GGGGCTTCCEEECCSSEEESCCCG
T ss_pred CCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCH----------HHhCCCCCCEEeCCCCccCCcCCh
Confidence 4555666663 44444555555 5677777777777744322221 145567778888888888877888
Q ss_pred ccCCCCCCceEEeccCCCcccccCCCCCCC-CcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC-CCCCCC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSFPEGGLPCA-KLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE-DGLPTN 669 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 669 (815)
.+..+++|++|++++|.....+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|......+. .+.+++
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 888888888888888876667777777776 888888888888777888777776 88888888854333332 356788
Q ss_pred CceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcc-cCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 670 LQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMV-SFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 670 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
|+.|++++|...... ..+..+++|++|++++ +.+. .+|. .+..+++|+.|++++|+....+|.
T Consensus 223 L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~--N~l~~~~p~---------~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRN--NRIYGTLPQ---------GLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CSEEECCSSEECCBG-----GGCCCCTTCCEEECCS--SCCEECCCG---------GGGGCTTCCEEECCSSEEEEECCC
T ss_pred CCEEECCCCceeeec-----CcccccCCCCEEECcC--CcccCcCCh---------HHhcCcCCCEEECcCCcccccCCC
Confidence 888888888654321 2356778899999988 4444 4443 345678999999999654446775
Q ss_pred cCCCCCCCCeeeeCCCCCCcccC
Q 044882 749 SIVDLQNLASLYLGDCPKLKYFP 771 (815)
Q Consensus 749 ~~~~l~~L~~L~i~~c~~l~~l~ 771 (815)
. ..+++|+.|++++++.+...|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEESTT
T ss_pred C-ccccccChHHhcCCCCccCCC
Confidence 4 889999999999987665443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=196.47 Aligned_cols=233 Identities=18% Similarity=0.193 Sum_probs=187.0
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
..+|..++++++.|++++|......+..+ ..+++|++|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 56 ~~iP~~~~~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~-i~~i~~~---------~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 56 REVPDGISTNTRLLNLHENQIQIIKVNSF--KHLRHLEILQLSRNH-IRTIEIG---------AFNGLANLNTLELFDNR 123 (440)
T ss_dssp SSCCSCCCTTCSEEECCSCCCCEECTTTT--SSCSSCCEEECCSSC-CCEECGG---------GGTTCSSCCEEECCSSC
T ss_pred CcCCCCCCCCCcEEEccCCcCCeeCHHHh--hCCCCCCEEECCCCc-CCccChh---------hccCCccCCEEECCCCc
Confidence 55666777889999999997544444444 789999999999984 3332222 25578899999999999
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccc-ccCCCCCcCcEEecCCCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPK-GLHNLTSLQELTIGRGVELPSLKE 663 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 663 (815)
+.+..+..+..+++|++|++++|......+..+..+++|++|++++|...+.++. .+.++++|++|++++| .++.++.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc
Confidence 9988888899999999999999986655555788899999999999877776665 5889999999999999 6778888
Q ss_pred CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCC
Q 044882 664 DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNL 743 (815)
Q Consensus 664 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l 743 (815)
...+++|++|++++|...... +..+.++++|+.|++++ +.+..++. ..+..+++|+.|+|++ +.+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~--n~l~~~~~--------~~~~~l~~L~~L~L~~-N~l 267 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQ--SQIQVIER--------NAFDNLQSLVEINLAH-NNL 267 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTT--CCCCEECT--------TSSTTCTTCCEEECTT-SCC
T ss_pred cCCCcccCEEECCCCccCccC----hhhhccCccCCEEECCC--CceeEECh--------hhhcCCCCCCEEECCC-CCC
Confidence 888899999999999654422 25788899999999998 67777765 4556789999999999 577
Q ss_pred ccccc-cCCCCCCCCeeeeCCCC
Q 044882 744 ERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 744 ~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
+.++. .+..+++|+.|+++++|
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccChhHhccccCCCEEEcCCCC
Confidence 77776 56789999999998865
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=196.60 Aligned_cols=233 Identities=20% Similarity=0.212 Sum_probs=186.3
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
..+|..+++++++|++++|......+..+ ..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 67 ~~iP~~~~~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~-i~~~~~~---------~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 67 SEVPQGIPSNTRYLNLMENNIQMIQADTF--RHLHHLEVLQLGRNS-IRQIEVG---------AFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCCSCCCTTCSEEECCSSCCCEECTTTT--TTCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSC
T ss_pred CccCCCCCCCccEEECcCCcCceECHHHc--CCCCCCCEEECCCCc-cCCcChh---------hccCcccCCEEECCCCc
Confidence 45666777899999999997555445555 789999999999983 3322221 24577899999999999
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccc-ccCCCCCcCcEEecCCCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPK-GLHNLTSLQELTIGRGVELPSLKE 663 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 663 (815)
+.+..+..+..+++|++|++++|......+..+..+++|++|++++|..++.++. .+..+++|++|++++| .++.++.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc
Confidence 9988888899999999999999986555555788899999999999877777765 5889999999999999 6777788
Q ss_pred CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCC
Q 044882 664 DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNL 743 (815)
Q Consensus 664 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l 743 (815)
...+++|++|++++|....... ..+.++++|+.|++++ +.+..++. ..+..+++|+.|+|++ +.+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~--n~l~~~~~--------~~~~~l~~L~~L~L~~-N~l 278 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMN--SQVSLIER--------NAFDGLASLVELNLAH-NNL 278 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECCS-SCC
T ss_pred ccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCC--CcCceECH--------HHhcCCCCCCEEECCC-CcC
Confidence 8888999999999997654222 4688899999999998 66666655 3456788999999999 577
Q ss_pred ccccc-cCCCCCCCCeeeeCCCC
Q 044882 744 ERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 744 ~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
+.+|. .+..+++|++|+++++|
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 77776 56789999999998865
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=194.01 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=59.8
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 232 (815)
.+.++.++..++.+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++| .+..++ ..+.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 4567777777888887664 5788888888888866 467788888888888887 455444 5677788888888887
Q ss_pred CCcccccc
Q 044882 233 TKSLEEMP 240 (815)
Q Consensus 233 ~~~l~~~p 240 (815)
|. +..+|
T Consensus 133 n~-l~~~~ 139 (452)
T 3zyi_A 133 NW-LTVIP 139 (452)
T ss_dssp SC-CSBCC
T ss_pred Cc-CCccC
Confidence 76 44443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-19 Score=192.86 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=60.5
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 232 (815)
.+.++.++..++.+|..+. .++++|+|++|.|+.++ ..+.++++|++|+|++| .+..++ ..+.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 4567777778888887665 57888888888888765 67788888888888888 555544 5677788888888887
Q ss_pred CCcccccc
Q 044882 233 TKSLEEMP 240 (815)
Q Consensus 233 ~~~l~~~p 240 (815)
|. +..+|
T Consensus 122 n~-l~~~~ 128 (440)
T 3zyj_A 122 NR-LTTIP 128 (440)
T ss_dssp SC-CSSCC
T ss_pred Cc-CCeeC
Confidence 76 44443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-19 Score=194.86 Aligned_cols=59 Identities=27% Similarity=0.395 Sum_probs=50.3
Q ss_pred ccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCccccccc
Q 044882 176 RYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPV 241 (815)
Q Consensus 176 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 241 (815)
.++++|++++|.++.+|..+. ++|++|++++| .+..+|. .+++|++|++++|. +..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC
Confidence 469999999999999998776 79999999999 7888887 57899999999987 666654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-22 Score=222.31 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=51.0
Q ss_pred CcccEEEcCCCCccccC--ccccCCccCCEEecCCCCCC-----ccchhhhccCCCcEEeccCCccccc-cchhh-cCcC
Q 044882 153 QRLRAFSLRGYHIFELP--DSIGDLRYLRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCDRLKK-LCADM-GNLA 223 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i-~~L~ 223 (815)
++|++|++++++++..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++| .+.. .+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence 45777777777766432 23566777777777777776 34566667777777777777 3432 22223 2344
Q ss_pred ----CcceeeccCCC
Q 044882 224 ----KLHHLKNSNTK 234 (815)
Q Consensus 224 ----~L~~L~l~~~~ 234 (815)
+|++|++++|.
T Consensus 82 ~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC 96 (461)
T ss_dssp STTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCC
Confidence 57777777776
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-21 Score=221.94 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=63.9
Q ss_pred CCCcccEEEcCCCCccc-cCccccCC--ccCCEEecCCCC-CC--ccchhhhccCCCcEEeccCCccccc----cchhhc
Q 044882 151 KLQRLRAFSLRGYHIFE-LPDSIGDL--RYLRYLNLSGTE-IR--TLPESVNKLYNLHSLLLEDCDRLKK----LCADMG 220 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~-lp~~~~~l--~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~ 220 (815)
.+++|++|+|++|.++. .+..+... .+|++|+|++|. +. .++..+.++++|++|+|++|..... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 67778888888877653 23444443 348888888775 32 2334445778888888888732111 334445
Q ss_pred CcCCcceeeccCCCcc----cccccccccccccccccc
Q 044882 221 NLAKLHHLKNSNTKSL----EEMPVGIGRLTSLQTLCN 254 (815)
Q Consensus 221 ~L~~L~~L~l~~~~~l----~~~p~~i~~L~~L~~L~~ 254 (815)
.+++|++|++++|..- ..++..+.++++|++|+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 6778888888777622 233344556777777743
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-22 Score=220.00 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=61.7
Q ss_pred ccCCCcccEEEcCCCCcc-----ccCccccCCccCCEEecCCCCCCcc-chhh-hccC----CCcEEeccCCcccc----
Q 044882 149 LFKLQRLRAFSLRGYHIF-----ELPDSIGDLRYLRYLNLSGTEIRTL-PESV-NKLY----NLHSLLLEDCDRLK---- 213 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i-~~L~----~L~~L~L~~~~~l~---- 213 (815)
+..+++|++|++++|.++ .++..+..+++|++|++++|.+... +..+ ..+. +|++|++++| .+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence 466777888888888876 4566777778888888888887642 3333 3455 5888888888 444
Q ss_pred -ccchhhcCcCCcceeeccCCC
Q 044882 214 -KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 214 -~lp~~i~~L~~L~~L~l~~~~ 234 (815)
.+|..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc
Confidence 567777888888888888876
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-19 Score=181.00 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=45.3
Q ss_pred EEEcCCCCccccCccccCCccCCEEecCCCCCCccchh-hhccCCCcEEeccCCcccccc---chhhcCcCCcceeeccC
Q 044882 157 AFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCDRLKKL---CADMGNLAKLHHLKNSN 232 (815)
Q Consensus 157 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l~~ 232 (815)
.++++++.++.+|..+. .+|++|++++|.++.+|.. ++++++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 45555555555555443 4566666666666655533 456666666666655 33322 44455556666666665
Q ss_pred CCccccccccccc
Q 044882 233 TKSLEEMPVGIGR 245 (815)
Q Consensus 233 ~~~l~~~p~~i~~ 245 (815)
|. +..+|..+..
T Consensus 88 n~-i~~l~~~~~~ 99 (306)
T 2z66_A 88 NG-VITMSSNFLG 99 (306)
T ss_dssp CS-EEEEEEEEET
T ss_pred Cc-cccChhhcCC
Confidence 55 4444433333
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=185.17 Aligned_cols=259 Identities=15% Similarity=0.109 Sum_probs=187.9
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
+.+|..++++|++|++++|.. +.++...+ ..+++|++|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 44 ~~iP~~~~~~L~~L~l~~n~i-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~---------~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 44 NSIPSGLTEAVKSLDLSNNRI-TYISNSDL-QRCVNLQALVLTSNG-INTIEED---------SFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SSCCTTCCTTCCEEECTTSCC-CEECTTTT-TTCTTCCEEECTTSC-CCEECTT---------TTTTCTTCCEEECCSSC
T ss_pred ccccccccccCcEEECCCCcC-cccCHHHh-ccCCCCCEEECCCCc-cCccCHh---------hcCCCCCCCEEECCCCc
Confidence 455666667899999998874 44554322 788999999999883 3332221 14567889999999999
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccC--CCCCCCCcceEEeccccccc-ccccccCCCCCcCcEEecCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPE--GGLPCAKLTRLEISSCKRLE-ALPKGLHNLTSLQELTIGRGVELPSL 661 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~ 661 (815)
+++..+..+.++++|++|++++|... .+|. .+..+++|++|++++|...+ ..+..+..+++|++|++++|......
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 98877777889999999999999754 5554 67889999999999995444 44567889999999999999544433
Q ss_pred CC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 662 KE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 662 ~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
+. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+..++.. .+ ......+.++.++++++
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~--n~l~~~~~~----~l-~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRD--TDLDTFHFS----EL-STGETNSLIKKFTFRNV 259 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEEES--CBCTTCCCC-----------CCCCCCEEEEESC
T ss_pred HHHHhccccCCeecCCCCccccchh----hhhhhcccccEEECCC--Ccccccccc----cc-ccccccchhhccccccc
Confidence 33 3677899999999997533221 2355689999999998 566665441 11 01134567888888875
Q ss_pred CC----CccccccCCCCCCCCeeeeCCCCCCcccCCC--CCCCccceeeecCCc
Q 044882 741 PN----LERLSSSIVDLQNLASLYLGDCPKLKYFPEK--GLPSSLLQLDIWGCP 788 (815)
Q Consensus 741 ~~----l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 788 (815)
.. +..+|..+..+++|++|++++| +++.+|.. ...++|++|++++||
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 32 2346777888999999999985 78888874 346899999999876
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-20 Score=190.24 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=52.7
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccc-cccccccCCCCCcCcEEecCCCCCC
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL-EALPKGLHNLTSLQELTIGRGVELP 659 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~ 659 (815)
+..+++|++|++++|. +..+|..+..+++|+.|++++|++. +.++..+..+++|+.|++++|..++
T Consensus 210 ~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 210 FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 5567888888888886 4467878888889999999999887 6777788888899999888765444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=178.43 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=84.9
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
+.+|...+++|++|++++|. ++.++...+ ..+++|++|++++|.. +.+.. . ...+.++++|+.|++++|.
T Consensus 20 ~~ip~~~~~~l~~L~L~~n~-l~~i~~~~~-~~l~~L~~L~L~~n~l-~~~~~--~-----~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 20 TSVPTGIPSSATRLELESNK-LQSLPHGVF-DKLTQLTKLSLSSNGL-SFKGC--C-----SQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp SSCCSCCCTTCCEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSSCC-CEEEE--E-----EHHHHSCSCCCEEECCSCS
T ss_pred ccCCCCCCCCCCEEECCCCc-cCccCHhHh-hccccCCEEECCCCcc-CcccC--c-----ccccccccccCEEECCCCc
Confidence 45555666778888888876 445555433 6778888888877732 11100 0 0012234555555555555
Q ss_pred cccCcccccCCCCCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCC-CCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELP-SLK 662 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~ 662 (815)
+.+ .+..+..+++|++|++++|......+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.... .++
T Consensus 90 i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 543 23345556666666666654322222 245555566666666665555555555555566666665553222 122
Q ss_pred C-CCCCCCCceEEEcCCc
Q 044882 663 E-DGLPTNLQSLTIEGNM 679 (815)
Q Consensus 663 ~-~~~~~~L~~L~l~~~~ 679 (815)
. ...+++|++|++++|.
T Consensus 169 ~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp SCCTTCTTCCEEECTTSC
T ss_pred hHHhhCcCCCEEECCCCC
Confidence 1 2334444444444443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=171.16 Aligned_cols=200 Identities=17% Similarity=0.131 Sum_probs=150.9
Q ss_pred ccccccccccccccCcccccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEecc-cccccccccccCCCCCcCcEE
Q 044882 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISS-CKRLEALPKGLHNLTSLQELT 651 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 651 (815)
+++.+++++|.+.+..+..+.++++|++|++++|..++.++. .+..+++|++|++++ |.+.+..+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 455566666666666666788888999999998874555554 677888999999998 676555556788889999999
Q ss_pred ecCCCCCCCCCCCCCCCCCc---eEEEcCCcchhhhhhhcCcCcccCCCcc-EEEEeccCCCcccCCCCccccccccCCC
Q 044882 652 IGRGVELPSLKEDGLPTNLQ---SLTIEGNMEIWKSMIERGRGFHRFSSLR-QLTIINCDDDMVSFPPKADDKRLGTALP 727 (815)
Q Consensus 652 l~~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 727 (815)
+++| .++.+|..+.+++|+ +|++++|+.+..... ..+.++++|+ .|++++ +.+..++. ..+.
T Consensus 112 l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~---~~~~~l~~L~~~L~l~~--n~l~~i~~--------~~~~ 177 (239)
T 2xwt_C 112 IFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV---NAFQGLCNETLTLKLYN--NGFTSVQG--------YAFN 177 (239)
T ss_dssp EEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT---TTTTTTBSSEEEEECCS--CCCCEECT--------TTTT
T ss_pred CCCC-CCccccccccccccccccEEECCCCcchhhcCc---ccccchhcceeEEEcCC--CCCcccCH--------hhcC
Confidence 9998 455577666777777 999999843332221 4578899999 999998 67778876 2334
Q ss_pred CCCccceEEecCCCCCccccc-cCCCC-CCCCeeeeCCCCCCcccCCCCCCCccceeeecCCcch
Q 044882 728 LPASLTSLWISGFPNLERLSS-SIVDL-QNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLI 790 (815)
Q Consensus 728 ~~~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 790 (815)
. ++|+.|++++|..++.+++ .+..+ ++|++|++++ +.++.+|.. .+++|+.|++++++.+
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 4 7999999999667888875 67888 9999999998 688888876 5679999999998754
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-20 Score=213.15 Aligned_cols=406 Identities=13% Similarity=0.090 Sum_probs=193.5
Q ss_pred cCCccCCEEecCCCCCCc-cchhhh-ccCCCcEEeccCCccccc--cchhhcCcCCcceeeccCCCccccc-cccccccc
Q 044882 173 GDLRYLRYLNLSGTEIRT-LPESVN-KLYNLHSLLLEDCDRLKK--LCADMGNLAKLHHLKNSNTKSLEEM-PVGIGRLT 247 (815)
Q Consensus 173 ~~l~~L~~L~L~~~~i~~-lp~~i~-~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~ 247 (815)
..+++|++|+|++|.+.. .+..+. .+++|++|++++|..+.. ++..+.++++|++|++++|. +... +..+..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~- 179 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF- 179 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS-
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH-
Confidence 456788888888888773 345554 688888888888855544 55555678888888888876 3321 1111100
Q ss_pred ccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHH
Q 044882 248 SLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKD 327 (815)
Q Consensus 248 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 327 (815)
...+++|++|+++++.. .... .
T Consensus 180 -------------------------------------------------~~~~~~L~~L~l~~~~~----~~~~-----~ 201 (594)
T 2p1m_B 180 -------------------------------------------------PDTYTSLVSLNISCLAS----EVSF-----S 201 (594)
T ss_dssp -------------------------------------------------CTTCCCCCEEECTTCCS----CCCH-----H
T ss_pred -------------------------------------------------hhcCCcCcEEEecccCC----cCCH-----H
Confidence 11223333443332210 0000 0
Q ss_pred HhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCC------ceec
Q 044882 328 VLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSR------VKRL 400 (815)
Q Consensus 328 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~------~~~~ 400 (815)
. ++.... .+++|++|++++|...+.++ .+..+++|++|.+..+.. +..+
T Consensus 202 ~----------------------l~~l~~--~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 202 A----------------------LERLVT--RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp H----------------------HHHHHH--HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred H----------------------HHHHHH--hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 0 000001 25788999998885444444 456778999999876532 0111
Q ss_pred CccccCCCCCCCCCCccee-eeccccccccccccCCCCCcccCCCcceeeeccCcccccC-C---CCCCCCccEEEEecc
Q 044882 401 GSEFYGNDSPIPFLCLETL-RFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGT-F---PEHLPALEMLVIEGC 475 (815)
Q Consensus 401 ~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-l---p~~l~~L~~L~l~~~ 475 (815)
...+ ..+++|+.+ .+.+... .... .....+++|++|++++|. +++. + ...+++|++|++.+|
T Consensus 258 ~~~l------~~~~~L~~Ls~~~~~~~--~~l~----~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 258 SVAL------SGCKELRCLSGFWDAVP--AYLP----AVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHH------HTCTTCCEEECCBTCCG--GGGG----GGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHH------hcCCCcccccCCcccch--hhHH----HHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 1111 115566665 2222111 0000 111146888888888875 4421 1 146778888888877
Q ss_pred cC---ccccCCCCCCcceEEeCCC--------CccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceE
Q 044882 476 EE---LLVSVTSLPALCKFISGGC--------KKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDM 544 (815)
Q Consensus 476 ~~---l~~~~~~~~~L~~L~l~~~--------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 544 (815)
-. +......+++|+.|++.+| ..+.......+... .++|++|.+..+. ++......+...+++|+.|
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~-~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYFCRQ-MTNAALITIARNRPNMTRF 402 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH-CTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh-chhHHHHHHhcCC-cCHHHHHHHHhhCCCccee
Confidence 21 1111123566666666332 22211111000000 1344444332222 2211111111233444444
Q ss_pred EEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCC-CCCCc
Q 044882 545 SIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGL-PCAKL 623 (815)
Q Consensus 545 ~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~l~~L 623 (815)
+++.+.. .+|.+++...+. +..+..+..+++|++|++++ ......+..+. .+++|
T Consensus 403 ~L~~~~~------------------~~~~~l~~~~~~-----~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 403 RLCIIEP------------------KAPDYLTLEPLD-----IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp EEEESST------------------TCCCTTTCCCTH-----HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred EeecccC------------------CCcccccCCchh-----hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 4441000 022222211110 00111234566777777765 22222222222 25677
Q ss_pred ceEEeccccccccccccc-CCCCCcCcEEecCCCCCCCCC---CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCcc
Q 044882 624 TRLEISSCKRLEALPKGL-HNLTSLQELTIGRGVELPSLK---EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLR 699 (815)
Q Consensus 624 ~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 699 (815)
++|++++|.+.+.....+ ..+++|++|++++|+. +... ....+++|++|++++|+....... .....++.|+
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~~lp~l~ 534 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACK---LLGQKMPKLN 534 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHH---HHHHHCTTEE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH---HHHHhCCCCE
Confidence 777777777544333333 4577777777777754 2111 112356788888888765332221 1124566666
Q ss_pred EEEEec
Q 044882 700 QLTIIN 705 (815)
Q Consensus 700 ~L~l~~ 705 (815)
...+..
T Consensus 535 i~~~~~ 540 (594)
T 2p1m_B 535 VEVIDE 540 (594)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 555544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=176.91 Aligned_cols=179 Identities=23% Similarity=0.319 Sum_probs=103.3
Q ss_pred cccccccccccccccccCcccccCCCCCCceEEeccCCCcccc-cCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSF-PEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.+++|+.|++++|.+.+..+..+.++++|++|++++|.....+ |..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 3444455555555555444555666666666666666533333 445566666666666666665555555666666666
Q ss_pred EEecCCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCC
Q 044882 650 LTIGRGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALP 727 (815)
Q Consensus 650 L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 727 (815)
|++++|. ++.++. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+..+.. ..+.
T Consensus 134 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~--n~l~~~~~--------~~~~ 198 (285)
T 1ozn_A 134 LYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQ--NRVAHVHP--------HAFR 198 (285)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCS--SCCCEECT--------TTTT
T ss_pred EECCCCc-ccccCHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCC--CcccccCH--------hHcc
Confidence 6666663 333332 2455666666666664332111 2456667777777776 34444432 2345
Q ss_pred CCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCC
Q 044882 728 LPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 728 ~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
.+++|+.|++++ +.++.++. .+..+++|++|++++++
T Consensus 199 ~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 199 DLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 567777777777 45555554 46777777777777753
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-19 Score=183.06 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=169.5
Q ss_pred cccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccc--cceEecccccccccccccccccccCcc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLS--LKNLLIHKCDNIRTLTVEEGIQSSSSR 590 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~--L~~l~l~~~~~L~~l~ls~n~~~~~~~ 590 (815)
.+|+++++++|.. .+|..+. ..|+.|+++++.. +.. .+|.. ...+.+.++++|+.|++++|.+.+..|
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~----~~L~~L~L~~n~l-~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFT----DIIKSLSLKRLTV-RAA---RIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHH----HHHHHCCCCEEEE-EEE---ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCceeEeeccccc--ccHHHHH----HHHhhcccccccc-cCC---CcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 4567777777765 5555442 1166777766632 110 11100 001112246788888888888888777
Q ss_pred ccc--CCCCCCceEEeccCCCcccccCCCCCC-----CCcceEEecccccccccccccCCCCCcCcEEecCCCCCCC---
Q 044882 591 SGL--HNLRQLQEISIRRCGNLVSFPEGGLPC-----AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPS--- 660 (815)
Q Consensus 591 ~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--- 660 (815)
..+ ..+++|++|++++|..... |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|...+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 776 7888899999998875444 6555544 7899999999988777778888889999999998864432
Q ss_pred CCCC--CCCCCCceEEEcCCcchhhh-hhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEe
Q 044882 661 LKED--GLPTNLQSLTIEGNMEIWKS-MIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWI 737 (815)
Q Consensus 661 ~~~~--~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 737 (815)
++.. +.+++|++|++++|...... ... ..+..+++|+.|++++ +.+...+.. ..+..+++|+.|++
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~--N~l~~~~~~-------~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCS--ALAAARVQLQGLDLSH--NSLRDAAGA-------PSCDWPSQLNSLNL 260 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHH--HHHHTTCCCSEEECTT--SCCCSSCCC-------SCCCCCTTCCEEEC
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHH--HHHhcCCCCCEEECCC--CcCCcccch-------hhhhhcCCCCEEEC
Confidence 1122 56788999999988754211 111 2345778999999998 555554320 12345689999999
Q ss_pred cCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCc
Q 044882 738 SGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 738 ~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
++ +.++.+|..+. ++|++|++++ ++++.+|.....++|++|++++++
T Consensus 261 s~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 261 SF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred CC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 99 56778887666 8999999998 478888775556889999998876
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=168.74 Aligned_cols=201 Identities=18% Similarity=0.120 Sum_probs=160.6
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccc-cccccccccCCCCCcCcEE
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCK-RLEALPKGLHNLTSLQELT 651 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~ 651 (815)
++++.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 456666777777777777789999999999999998766668889999999999999998 5555577899999999999
Q ss_pred ecCCCCCCCCCC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCC
Q 044882 652 IGRGVELPSLKE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPA 730 (815)
Q Consensus 652 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 730 (815)
+++|......+. ...+++|++|++++|....... ..+..+++|+.|++++ +.+..++. ..+..++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~--n~l~~~~~--------~~~~~l~ 177 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHG--NRISSVPE--------RAFRGLH 177 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCEECT--------TTTTTCT
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH----hHhccCCCccEEECCC--CcccccCH--------HHhcCcc
Confidence 999954433333 3678999999999997543211 4578899999999998 67777776 3456789
Q ss_pred ccceEEecCCCCCccc-cccCCCCCCCCeeeeCCCCCCcccCC--CCCCCccceeeecCCcc
Q 044882 731 SLTSLWISGFPNLERL-SSSIVDLQNLASLYLGDCPKLKYFPE--KGLPSSLLQLDIWGCPL 789 (815)
Q Consensus 731 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~--~~~~~~L~~L~i~~c~~ 789 (815)
+|+.|++++| .++.+ |..+..+++|++|++++| .++.++. ....++|+.|+++++|-
T Consensus 178 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 9999999995 45555 678999999999999995 7777775 23457999999999874
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-21 Score=217.02 Aligned_cols=84 Identities=20% Similarity=0.189 Sum_probs=54.2
Q ss_pred cCCCcccEEEcCCCCcccc-Ccccc-CCccCCEEecCCC-CCCc--cchhhhccCCCcEEeccCCccccc-----cchhh
Q 044882 150 FKLQRLRAFSLRGYHIFEL-PDSIG-DLRYLRYLNLSGT-EIRT--LPESVNKLYNLHSLLLEDCDRLKK-----LCADM 219 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~l-p~~~~-~l~~L~~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i 219 (815)
..+++|++|+|+++.++.. +..+. .+++|++|++++| .+.. ++..+.++++|++|++++|. +.. ++...
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 4567788888887776632 34443 5678888888877 4553 45555677888888888773 322 23323
Q ss_pred cCcCCcceeeccCCC
Q 044882 220 GNLAKLHHLKNSNTK 234 (815)
Q Consensus 220 ~~L~~L~~L~l~~~~ 234 (815)
..+++|++|++++|.
T Consensus 181 ~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA 195 (594)
T ss_dssp TTCCCCCEEECTTCC
T ss_pred hcCCcCcEEEecccC
Confidence 466678888887774
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-19 Score=183.19 Aligned_cols=211 Identities=11% Similarity=0.049 Sum_probs=92.0
Q ss_pred ccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCccccc
Q 044882 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGL 593 (815)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~ 593 (815)
+|++|++++|......+..+ ..+++|+.|++++|...... .+..+++|+.|++++|.+.+..
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~------------~~~~l~~L~~L~Ls~n~l~~l~---- 96 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETL------------DLESLSTLRTLDLNNNYVQELL---- 96 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHH--TTCTTCCEEECTTSCCEEEE------------EETTCTTCCEEECCSSEEEEEE----
T ss_pred CCCEEECcCCccCcCCHHHh--hCCCcCCEEECCCCcCCcch------------hhhhcCCCCEEECcCCcccccc----
Confidence 45555555554332222233 45555555555555321110 1334444444444444444322
Q ss_pred CCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC--CCCCCCc
Q 044882 594 HNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED--GLPTNLQ 671 (815)
Q Consensus 594 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~ 671 (815)
..++|++|++++|......+.. +++|++|++++|.+.+..+..+..+++|++|++++|......+.. ..+++|+
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred -CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 1245555555555433222221 344555555555544444444444555555555555222111111 1234555
Q ss_pred eEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCC
Q 044882 672 SLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIV 751 (815)
Q Consensus 672 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 751 (815)
+|++++|..... .....+++|++|++++ +.+..++. .+..+++|+.|++++ +.++.+|..+.
T Consensus 173 ~L~L~~N~l~~~------~~~~~l~~L~~L~Ls~--N~l~~l~~---------~~~~l~~L~~L~L~~-N~l~~l~~~~~ 234 (317)
T 3o53_A 173 HLNLQYNFIYDV------KGQVVFAKLKTLDLSS--NKLAFMGP---------EFQSAAGVTWISLRN-NKLVLIEKALR 234 (317)
T ss_dssp EEECTTSCCCEE------ECCCCCTTCCEEECCS--SCCCEECG---------GGGGGTTCSEEECTT-SCCCEECTTCC
T ss_pred EEECCCCcCccc------ccccccccCCEEECCC--CcCCcchh---------hhcccCcccEEECcC-CcccchhhHhh
Confidence 555555542221 1112245555555554 34444433 123345555555555 34455555555
Q ss_pred CCCCCCeeeeCCC
Q 044882 752 DLQNLASLYLGDC 764 (815)
Q Consensus 752 ~l~~L~~L~i~~c 764 (815)
.+++|+.|++++|
T Consensus 235 ~l~~L~~L~l~~N 247 (317)
T 3o53_A 235 FSQNLEHFDLRGN 247 (317)
T ss_dssp CCTTCCEEECTTC
T ss_pred cCCCCCEEEccCC
Confidence 5555555555554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=158.95 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=114.0
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccc-c
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE-G 583 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~-n 583 (815)
+.+|. ++.+|++|++++|. ++.++...+ ..+++|++|++++|..++.++... +.++++|+.|++++ |
T Consensus 24 ~~ip~-~~~~l~~L~l~~n~-l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~~---------f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 24 QRIPS-LPPSTQTLKLIETH-LRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHS---------FYNLSKVTHIEIRNTR 91 (239)
T ss_dssp SSCCC-CCTTCCEEEEESCC-CSEECTTTT-TTCTTCCEEEEECCSSCCEECTTT---------EESCTTCCEEEEEEET
T ss_pred cccCC-CCCcccEEEEeCCc-ceEECHHHc-cCCCCCcEEeCCCCCCcceeCHhH---------cCCCcCCcEEECCCCC
Confidence 44455 56678888888876 344444222 567777777777775444333221 23444555555554 5
Q ss_pred ccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcc---eEEeccc-ccccccccccCCCCCcC-cEEecCCCCC
Q 044882 584 IQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLT---RLEISSC-KRLEALPKGLHNLTSLQ-ELTIGRGVEL 658 (815)
Q Consensus 584 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~ 658 (815)
.+.+..+..+.++++|++|++++|.. ..+|. +..+++|+ +|++++| .+.+..+..+.++++|+ +|++++| .+
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l 168 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GF 168 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CC
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CC
Confidence 55544444555555555555555542 22443 44444444 5555555 33332233345555555 5555555 22
Q ss_pred CCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCC-CccceEEe
Q 044882 659 PSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLP-ASLTSLWI 737 (815)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l 737 (815)
+.++. ..+.. ++|+.|++++ +..+..++. ..+..+ ++|+.|++
T Consensus 169 ~~i~~--------------------------~~~~~-~~L~~L~L~~-n~~l~~i~~--------~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 169 TSVQG--------------------------YAFNG-TKLDAVYLNK-NKYLTVIDK--------DAFGGVYSGPSLLDV 212 (239)
T ss_dssp CEECT--------------------------TTTTT-CEEEEEECTT-CTTCCEECT--------TTTTTCSBCCSEEEC
T ss_pred cccCH--------------------------hhcCC-CCCCEEEcCC-CCCcccCCH--------HHhhccccCCcEEEC
Confidence 23322 22333 5666677666 224556654 234556 78888888
Q ss_pred cCCCCCccccccCCCCCCCCeeeeCCCCC
Q 044882 738 SGFPNLERLSSSIVDLQNLASLYLGDCPK 766 (815)
Q Consensus 738 ~~c~~l~~l~~~~~~l~~L~~L~i~~c~~ 766 (815)
++ +.++.+|.. .+++|+.|+++++..
T Consensus 213 ~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 213 SQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CC-CccccCChh--HhccCceeeccCccC
Confidence 88 677777754 678888888888754
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=163.61 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=57.0
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++++|+.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 34455555555555555555555555556666666655544444445555556666666655554444444555556666
Q ss_pred EEecCCCCCCC--CCC-CCCCCCCceEEEcCCc
Q 044882 650 LTIGRGVELPS--LKE-DGLPTNLQSLTIEGNM 679 (815)
Q Consensus 650 L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~~~ 679 (815)
|++++|. ++. +|. .+.+++|++|++++|.
T Consensus 129 L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 129 LNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECcCCc-cceecCchhhccCCCCCEEECCCCC
Confidence 6665553 222 121 2344555555555554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-18 Score=176.21 Aligned_cols=224 Identities=19% Similarity=0.188 Sum_probs=157.5
Q ss_pred cccceEEEeccCCc-ccCchhhh-----cCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccc
Q 044882 513 SVLKKIEIRECDAL-KSLPEAWM-----CGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQS 586 (815)
Q Consensus 513 ~~L~~L~l~~~~~l-~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~ 586 (815)
..|+.|++++|... ..++.... ...+++|++|++++|.....++.. + .+.++++|+.|++++|.+.
T Consensus 63 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~---~~~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 63 DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP-----L---LEATGPDLNILNLRNVSWA 134 (312)
T ss_dssp HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC-----S---SSCCSCCCSEEEEESCBCS
T ss_pred HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH-----H---HHhcCCCccEEEccCCCCc
Confidence 44666666666542 22333220 015788888888888543332221 1 0256778888888888888
Q ss_pred cCcccccCCC-----CCCceEEeccCCCcccccCCCCCCCCcceEEecccccccc--ccccc--CCCCCcCcEEecCCCC
Q 044882 587 SSSRSGLHNL-----RQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEA--LPKGL--HNLTSLQELTIGRGVE 657 (815)
Q Consensus 587 ~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~ 657 (815)
+. |..+..+ ++|++|++++|......|..+..+++|++|++++|++.+. ++..+ ..+++|++|++++| .
T Consensus 135 ~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~ 212 (312)
T 1wwl_A 135 TR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-G 212 (312)
T ss_dssp SS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-C
T ss_pred ch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-c
Confidence 77 6666665 8899999999887666667888889999999999987654 23333 78889999999998 4
Q ss_pred CCCCCCC-----CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 658 LPSLKED-----GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 658 ~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
++.++.. ..+++|++|++++|....... . ..+..+++|+.|++++ +.+..+|. ...++|
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~--~~~~~l~~L~~L~Ls~--N~l~~ip~-----------~~~~~L 276 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAG-A--PSCDWPSQLNSLNLSF--TGLKQVPK-----------GLPAKL 276 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-C--SCCCCCTTCCEEECTT--SCCSSCCS-----------SCCSEE
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-h--hhhhhcCCCCEEECCC--CccChhhh-----------hccCCc
Confidence 4433221 255789999999887544221 1 3456678999999998 66777776 223899
Q ss_pred ceEEecCCCCCccccccCCCCCCCCeeeeCCC
Q 044882 733 TSLWISGFPNLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
+.|++++ +.++.+|. +..+++|++|+++++
T Consensus 277 ~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 277 SVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEEECCS-SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred eEEECCC-CCCCCChh-HhhCCCCCEEeccCC
Confidence 9999999 68888875 889999999999985
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=181.61 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=82.7
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccC-CCCCcCcEE
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLH-NLTSLQELT 651 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~ 651 (815)
++|+.|++++|.+.+..+. .+++|++|++++|......|..+..+++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4455555555555544332 234555555555554444444555555555556655555554444443 455555555
Q ss_pred ecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCc
Q 044882 652 IGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPAS 731 (815)
Q Consensus 652 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 731 (815)
+++| .++.++....+++|+.|++++|..... +..+..+++|+.|++++ +.+..+|. .+..+++
T Consensus 176 Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~--N~l~~lp~---------~l~~l~~ 238 (487)
T 3oja_A 176 LQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRN--NKLVLIEK---------ALRFSQN 238 (487)
T ss_dssp CTTS-CCCEEECCCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTT--SCCCEECT---------TCCCCTT
T ss_pred cCCC-ccccccccccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEecC--CcCcccch---------hhccCCC
Confidence 5555 333344444455555555555543321 11244455555555555 34444443 1234455
Q ss_pred cceEEecCCCCC-ccccccCCCCCCCCeeee
Q 044882 732 LTSLWISGFPNL-ERLSSSIVDLQNLASLYL 761 (815)
Q Consensus 732 L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~i 761 (815)
|+.|++++|+.. ..+|..+..++.|+.+++
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 555555553322 234444444555554444
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=160.69 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=32.2
Q ss_pred CcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccC
Q 044882 337 NLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGM 394 (815)
Q Consensus 337 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~ 394 (815)
+|+.|++++|.+..+|..... .+++|++|++++|.+.+..+ .++.+++|+.|++++|
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 344444444444444443221 46677777777776665444 3566777777777666
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=160.05 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=153.7
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
..+|..+|++|++|++++|......+..+ ..+++|++|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 20 ~~ip~~l~~~l~~L~ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 20 YKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCE-IQTIEDG---------AYQSLSHLSTLILTGNP 87 (276)
T ss_dssp SSCCSSSCTTCCEEECTTCCCCEECTTTT--TTCTTCSEEECTTCC-CCEECTT---------TTTTCTTCCEEECTTCC
T ss_pred cccCCCCCCCccEEECCCCcccccCHhHh--ccccCCcEEECCCCc-CCccCHH---------HccCCcCCCEEECCCCc
Confidence 45666677889999999997444333344 789999999999993 3333322 24567899999999999
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc-ccccccCCCCCcCcEEecCCCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE-ALPKGLHNLTSLQELTIGRGVELPSLKE 663 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 663 (815)
+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++| .++.++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCH
Confidence 999888899999999999999998666555578889999999999999876 36889999999999999999 4443321
Q ss_pred CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCcc-EEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCC
Q 044882 664 DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLR-QLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPN 742 (815)
Q Consensus 664 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 742 (815)
.. + ..+..++.|. .|++++ +.+..++. . .+ ...+|+.|++++ +.
T Consensus 167 ~~-------------------~----~~l~~L~~l~l~L~ls~--n~l~~~~~----~----~~-~~~~L~~L~L~~-n~ 211 (276)
T 2z62_A 167 TD-------------------L----RVLHQMPLLNLSLDLSL--NPMNFIQP----G----AF-KEIRLKELALDT-NQ 211 (276)
T ss_dssp GG-------------------G----HHHHTCTTCCEEEECCS--SCCCEECT----T----SS-CSCCEEEEECCS-SC
T ss_pred HH-------------------h----hhhhhccccceeeecCC--CcccccCc----c----cc-CCCcccEEECCC-Cc
Confidence 10 0 0112223333 566666 55555554 1 11 234788888888 45
Q ss_pred Cccccc-cCCCCCCCCeeeeCCC
Q 044882 743 LERLSS-SIVDLQNLASLYLGDC 764 (815)
Q Consensus 743 l~~l~~-~~~~l~~L~~L~i~~c 764 (815)
++.+|. .+..+++|++|+++++
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCSS
T ss_pred eeecCHhHhcccccccEEEccCC
Confidence 777776 4577888999998875
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-16 Score=156.09 Aligned_cols=175 Identities=21% Similarity=0.212 Sum_probs=95.7
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
++.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 34444444444444444566666666666666653332223345566666666666665544444556666666666666
Q ss_pred CCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 655 GVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 655 ~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
| .++.++. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+..++. ..+..+++|
T Consensus 119 n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~--n~l~~~~~--------~~~~~l~~L 183 (270)
T 2o6q_A 119 N-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYN--NQLKRVPE--------GAFDKLTEL 183 (270)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCSCCCT--------TTTTTCTTC
T ss_pred C-ccCeeCHHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecC--CcCcEeCh--------hHhccCCCc
Confidence 6 3333332 1345566666666654322111 2355666666666666 45555544 233455677
Q ss_pred ceEEecCCCCCccccc-cCCCCCCCCeeeeCCCC
Q 044882 733 TSLWISGFPNLERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
+.|++++ +.++.+|+ .+..+++|+.|++++++
T Consensus 184 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 184 KTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 7777776 35555555 35666777777776643
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=158.40 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=99.6
Q ss_pred ccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEec
Q 044882 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG 653 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 653 (815)
+++.|++++|.+.+..+..+..+++|++|++++|.. ..++.. ..+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 445555555555555555666666666666666653 333332 45566666666666643 455556666666666666
Q ss_pred CCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCc
Q 044882 654 RGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPAS 731 (815)
Q Consensus 654 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 731 (815)
+| .++.++. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+..++. ..+..+++
T Consensus 109 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~--N~l~~l~~--------~~~~~l~~ 173 (290)
T 1p9a_G 109 FN-RLTSLPLGALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLAN--NNLTELPA--------GLLNGLEN 173 (290)
T ss_dssp SS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTT--SCCSCCCT--------TTTTTCTT
T ss_pred CC-cCcccCHHHHcCCCCCCEEECCCCCCCccCh----hhcccccCCCEEECCC--CcCCccCH--------HHhcCcCC
Confidence 66 3333332 2455666666666664332111 3455666666666666 55556555 23345666
Q ss_pred cceEEecCCCCCccccccCCCCCCCCeeeeCCC
Q 044882 732 LTSLWISGFPNLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 732 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
|+.|++++ +.++.+|..+..+++|+.|+++++
T Consensus 174 L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 174 LDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CCEEECCC-CcCCccChhhcccccCCeEEeCCC
Confidence 77777766 566666666666666777776654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-17 Score=177.91 Aligned_cols=238 Identities=11% Similarity=0.097 Sum_probs=139.1
Q ss_pred CCCCCcccEEEeecCCCCCCc-cCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCccccCCCCCC
Q 044882 333 KPHENLEQFCISGYGGTKFPT-WFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPI 411 (815)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 411 (815)
..+++|+.|+++++.+..++. .+. .+++|++|++++|.+.+..+ ++.+++|++|++++|. +..++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~---------- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---------- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----------
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----------
Confidence 344466666666666665543 343 46667777777666554443 6666666666666652 22211
Q ss_pred CCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCCCCCccEEEEecccCccccCCCCCCcceE
Q 044882 412 PFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKF 491 (815)
Q Consensus 412 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 491 (815)
..++|+.|++++ +.+.+..+..+++|+.|++++|.........
T Consensus 97 -----------------------------~~~~L~~L~L~~-N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~------- 139 (487)
T 3oja_A 97 -----------------------------VGPSIETLHAAN-NNISRVSCSRGQGKKNIYLANNKITMLRDLD------- 139 (487)
T ss_dssp -----------------------------ECTTCCEEECCS-SCCCCEEECCCSSCEEEECCSSCCCSGGGBC-------
T ss_pred -----------------------------CCCCcCEEECcC-CcCCCCCccccCCCCEEECCCCCCCCCCchh-------
Confidence 224555566655 3444322334445555555444321100000
Q ss_pred EeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccc
Q 044882 492 ISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHK 571 (815)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~ 571 (815)
....++|++|++++|......|..+. ..+++|+.|++++|.. +.++. ...
T Consensus 140 -----------------~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l-~~~~~-----------~~~ 189 (487)
T 3oja_A 140 -----------------EGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI-YDVKG-----------QVV 189 (487)
T ss_dssp -----------------GGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC-CEEEC-----------CCC
T ss_pred -----------------hcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcc-ccccc-----------ccc
Confidence 01125667777777765444444432 4678888888888742 22211 224
Q ss_pred ccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccc-cccccccCCCCCcCcE
Q 044882 572 CDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL-EALPKGLHNLTSLQEL 650 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L 650 (815)
+++|+.|++++|.+++..+. +..+++|+.|++++|.. ..+|..+..+++|+.|++++|++. +.+|..+..+++|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 66777777777777765553 77778888888888764 457777777788888888888776 4566667777777777
Q ss_pred Eec
Q 044882 651 TIG 653 (815)
Q Consensus 651 ~l~ 653 (815)
+++
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 775
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-17 Score=164.87 Aligned_cols=171 Identities=17% Similarity=0.279 Sum_probs=93.7
Q ss_pred cccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcce
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 227 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 227 (815)
.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++++++|++|++++| .+..+|. ++.+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence 34445555555555555555444 555555555555555555443 3455555555555555 4444443 555555555
Q ss_pred eeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceee
Q 044882 228 LKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELL 307 (815)
Q Consensus 228 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 307 (815)
|++++|. +..++. ++.+ ++|+.|+
T Consensus 134 L~l~~n~-l~~~~~-l~~l------------------------------------------------------~~L~~L~ 157 (308)
T 1h6u_A 134 LYLDLNQ-ITNISP-LAGL------------------------------------------------------TNLQYLS 157 (308)
T ss_dssp EECCSSC-CCCCGG-GGGC------------------------------------------------------TTCCEEE
T ss_pred EECCCCc-cCcCcc-ccCC------------------------------------------------------CCccEEE
Confidence 5555554 333332 3333 3444444
Q ss_pred eEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcC
Q 044882 308 LRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLK 387 (815)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 387 (815)
++.|...+ +..+..+++|+.|++++|.+..++. +. .+++|++|++++|.+.+.. .+..+++|+
T Consensus 158 l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~ 220 (308)
T 1h6u_A 158 IGNAQVSD-------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLF 220 (308)
T ss_dssp CCSSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCC
T ss_pred ccCCcCCC-------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCC
Confidence 44443310 1114455677777777777666665 22 4778888888888766443 467778888
Q ss_pred eeeeccCC
Q 044882 388 HLAVCGMS 395 (815)
Q Consensus 388 ~L~l~~~~ 395 (815)
.|++++|+
T Consensus 221 ~L~l~~N~ 228 (308)
T 1h6u_A 221 IVTLTNQT 228 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEccCCe
Confidence 88887764
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-16 Score=160.69 Aligned_cols=229 Identities=17% Similarity=0.128 Sum_probs=110.9
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccccccc-cccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRT-LTVEEG 583 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~-l~ls~n 583 (815)
+.+|..+|+++++|++++|. ++.+|...+ .++++|++|++++|...+.++...+ .+++++.. +.++.|
T Consensus 22 t~iP~~l~~~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f---------~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 22 TEIPSDLPRNAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVF---------SNLPKLHEIRIEKAN 90 (350)
T ss_dssp CSCCTTCCTTCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSB---------CSCTTCCEEEEEEET
T ss_pred CccCcCcCCCCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHh---------hcchhhhhhhcccCC
Confidence 45566666778888888875 455655432 6777788888877765544433222 22333322 233345
Q ss_pred ccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccc-ccCCC-CCcCcEEecCCCCCCCC
Q 044882 584 IQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPK-GLHNL-TSLQELTIGRGVELPSL 661 (815)
Q Consensus 584 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~ 661 (815)
.+.+..+..|..+++|++|++++|......+..+....++..|++.++..+..++. .+..+ ..++.|++++| .++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEE
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCC
Confidence 55555555555666666666666653333333344444555555555433333332 23333 24555555555 33333
Q ss_pred CCC-CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 662 KED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 662 ~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
+.. ....+|++|++.++..+..... ..|.++++|+.|++++ +.+..+|. ..+.+|+.|.+.+|
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~--N~l~~lp~-----------~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPN---DVFHGASGPVILDISR--TRIHSLPS-----------YGLENLKKLRARST 233 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCT---TTTTTEECCSEEECTT--SCCCCCCS-----------SSCTTCCEEECTTC
T ss_pred ChhhccccchhHHhhccCCcccCCCH---HHhccCcccchhhcCC--CCcCccCh-----------hhhccchHhhhccC
Confidence 322 2223445555544333321111 2344444455555544 34444443 22334444444444
Q ss_pred CCCccccccCCCCCCCCeeeeC
Q 044882 741 PNLERLSSSIVDLQNLASLYLG 762 (815)
Q Consensus 741 ~~l~~l~~~~~~l~~L~~L~i~ 762 (815)
+.++.+| .+..+++|+.+++.
T Consensus 234 ~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 234 YNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp TTCCCCC-CTTTCCSCCEEECS
T ss_pred CCcCcCC-CchhCcChhhCcCC
Confidence 4444444 24444444444443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=162.15 Aligned_cols=204 Identities=15% Similarity=0.088 Sum_probs=133.0
Q ss_pred ccccccccccccccccCccccc--CCCCCCceEEeccCCCccccc----CCCCCCCCcceEEecccccccccccccCCCC
Q 044882 572 CDNIRTLTVEEGIQSSSSRSGL--HNLRQLQEISIRRCGNLVSFP----EGGLPCAKLTRLEISSCKRLEALPKGLHNLT 645 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 645 (815)
+++|+.|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456666666666666666666 667777777777776554333 1233567788888888777666667777777
Q ss_pred CcCcEEecCCCCCCC--CC---CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccC-CCCccc
Q 044882 646 SLQELTIGRGVELPS--LK---EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSF-PPKADD 719 (815)
Q Consensus 646 ~L~~L~l~~~~~~~~--~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~ 719 (815)
+|++|++++|..... ++ ..+.+++|++|++++|......... ...+..+++|++|++++ +.+..+ |.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~~l~~L~~L~Ls~--N~l~~~~p~---- 242 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AALAAAGVQPHSLDLSH--NSLRATVNP---- 242 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HHHHHHTCCCSSEECTT--SCCCCCCCS----
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HHHHhcCCCCCEEECCC--CCCCccchh----
Confidence 888888887753321 11 1145677888888877653211100 01245678888888888 555554 33
Q ss_pred cccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCc
Q 044882 720 KRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 720 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
.+ ..+..+++|+.|++++ +.++.+|..+. ++|++|++++ ++++.+|....+++|+.|++++++
T Consensus 243 -~~-~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 243 -SA-PRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CC-SSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTT
T ss_pred -hH-HhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCC
Confidence 10 1112347899999988 67778887664 7899999987 477777665556888999988876
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=153.01 Aligned_cols=194 Identities=19% Similarity=0.187 Sum_probs=152.8
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
.+.++.+++.++.. |..+ .+++++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45666666666643 3333 26899999999986555555788999999999999997766556678999999999999
Q ss_pred CCCCCCCCCC--CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 655 GVELPSLKED--GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 655 ~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
|. ++.++.. ..+++|++|++++|....... ..+..+++|+.|++++ +.+..++. ..+..+++|
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~--n~l~~~~~--------~~~~~l~~L 159 (270)
T 2o6q_A 95 NK-LQALPIGVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTYLSLGY--NELQSLPK--------GVFDKLTSL 159 (270)
T ss_dssp SC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTC
T ss_pred Cc-CCcCCHhHcccccCCCEEECCCCccCeeCH----HHhCcCcCCCEEECCC--CcCCccCH--------hHccCCccc
Confidence 94 5555532 578999999999997544221 4578999999999999 67777776 345678999
Q ss_pred ceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCCC--CCccceeeecCCc
Q 044882 733 TSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKGL--PSSLLQLDIWGCP 788 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 788 (815)
+.|++++ +.++.+++ .+..+++|++|++++| .++.++...+ .++|+.|+++++|
T Consensus 160 ~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 9999999 57777776 5889999999999995 8888887433 5799999998876
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=155.57 Aligned_cols=198 Identities=18% Similarity=0.179 Sum_probs=155.9
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++++++.++.++|.++... ..+ .++++.|++++|......+..+..+++|++|++++|.+.+. +.. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCE
Confidence 34556666666666665433 233 36899999999987777777889999999999999997654 333 78999999
Q ss_pred EEecCCCCCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCC
Q 044882 650 LTIGRGVELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPL 728 (815)
Q Consensus 650 L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (815)
|++++| .++.+|.. ..+++|++|++++|...... +..+.++++|+.|++++ +.+..++. ..+..
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~--N~l~~~~~--------~~~~~ 146 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKG--NELKTLPP--------GLLTP 146 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTT--SCCCCCCT--------TTTTT
T ss_pred EECCCC-cCCcCchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCC--CCCCccCh--------hhccc
Confidence 999999 55666653 67899999999999755422 14688999999999999 67878776 44567
Q ss_pred CCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCC-CCCccceeeecCCcc
Q 044882 729 PASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKG-LPSSLLQLDIWGCPL 789 (815)
Q Consensus 729 ~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~-~~~~L~~L~i~~c~~ 789 (815)
+++|+.|++++ +.++.+|. .+..+++|++|++++ ++++.+|... -.++|+.|+++++|-
T Consensus 147 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 147 TPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 89999999999 67889887 457899999999998 5888998733 346899999998763
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-15 Score=154.57 Aligned_cols=238 Identities=16% Similarity=0.112 Sum_probs=161.7
Q ss_pred eeeeccCcccccCCCCCC-CCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCC
Q 044882 447 ELHILRCSKLKGTFPEHL-PALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDA 525 (815)
Q Consensus 447 ~L~l~~c~~l~~~lp~~l-~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 525 (815)
+++.++ ++++ .+|..+ +++++|+++++..-......|.+ .++|++|++++|..
T Consensus 13 ~v~C~~-~~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~------------------------l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 13 VFLCQE-SKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSG------------------------FGDLEKIEISQNDV 66 (350)
T ss_dssp EEEEES-TTCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTT------------------------CTTCCEEEEECCTT
T ss_pred EEEecC-CCCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcC------------------------CCCCCEEECcCCCC
Confidence 444444 4677 677554 46788888776432111111111 15677888888877
Q ss_pred cccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEec
Q 044882 526 LKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIR 605 (815)
Q Consensus 526 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~ 605 (815)
.+.++...+ .+++++.++.+.++..++.++... +.++++|+.+++++|.+.+..+..+....++..|++.
T Consensus 67 ~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l~~~~---------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 67 LEVIEADVF-SNLPKLHEIRIEKANNLLYINPEA---------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp CCEECTTSB-CSCTTCCEEEEEEETTCCEECTTS---------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred CCccChhHh-hcchhhhhhhcccCCcccccCchh---------hhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 666665443 677777776666555555544332 3466778888888888877776667777788888888
Q ss_pred cCCCcccccC-CCCCC-CCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC--CCCCCCceEEEcCCcch
Q 044882 606 RCGNLVSFPE-GGLPC-AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED--GLPTNLQSLTIEGNMEI 681 (815)
Q Consensus 606 ~~~~l~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l 681 (815)
++.....++. .+..+ ..++.|++++|.+. .++......++|++|++++|..++.++.. +.+++|++|++++|...
T Consensus 137 ~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 7766776665 34444 46888999999865 45555556678999999887788888764 57789999999999644
Q ss_pred hhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecC
Q 044882 682 WKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISG 739 (815)
Q Consensus 682 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 739 (815)
.. ....+.+|+.|.+.+ +++++.+|. +..+++|+.+++.+
T Consensus 216 ~l-------p~~~~~~L~~L~~l~-~~~l~~lP~----------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 216 SL-------PSYGLENLKKLRARS-TYNLKKLPT----------LEKLVALMEASLTY 255 (350)
T ss_dssp CC-------CSSSCTTCCEEECTT-CTTCCCCCC----------TTTCCSCCEEECSC
T ss_pred cc-------ChhhhccchHhhhcc-CCCcCcCCC----------chhCcChhhCcCCC
Confidence 31 123467788888888 577888875 34678999999976
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-16 Score=159.29 Aligned_cols=140 Identities=20% Similarity=0.333 Sum_probs=114.4
Q ss_pred CCceeEEEeecccccccccccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCc
Q 044882 97 SENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLR 176 (815)
Q Consensus 97 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~ 176 (815)
...++++.+..+... .++.+..+++|+.|.+.++. +. .+++ +..+++|++|++++|.++.+| .+..++
T Consensus 40 l~~L~~L~l~~~~i~---~l~~~~~l~~L~~L~L~~n~------i~-~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQ------IT-DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCC---CCTTGGGCTTCCEEECCSSC------CC-CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCT
T ss_pred cCCcCEEEeeCCCcc---CchhhhccCCCCEEEccCCc------CC-CChh-HccCCCCCEEEccCCcCCCch-hhcCCC
Confidence 456788887765433 34567789999999887764 22 2333 889999999999999999886 699999
Q ss_pred cCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCccccccccccccccccccc
Q 044882 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 177 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
+|++|++++|.++.+|. ++.+++|++|++++| .+..+|. ++.+++|++|++++|. +..++. ++.+++|+.|+
T Consensus 108 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLK 179 (308)
T ss_dssp TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEE
T ss_pred CCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEE
Confidence 99999999999999875 999999999999999 7888877 9999999999999997 666665 66676666663
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=153.23 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=38.7
Q ss_pred cccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcE
Q 044882 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQEL 650 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 650 (815)
.+++|+.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 34444444444444444444444444555555555544333223334444455555555554443333334444455555
Q ss_pred EecCC
Q 044882 651 TIGRG 655 (815)
Q Consensus 651 ~l~~~ 655 (815)
++++|
T Consensus 163 ~l~~n 167 (272)
T 3rfs_A 163 DLSYN 167 (272)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=157.28 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=80.6
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccc--cc--cccCCCCCcCcEEecCCCCCCCCCCC-----C
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEA--LP--KGLHNLTSLQELTIGRGVELPSLKED-----G 665 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-----~ 665 (815)
.+++|++|++++|......+..+..+++|++|++++|++.+. ++ ..+..+++|++|++++| .++.++.. +
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh
Confidence 344455555555544333334444445555555555543321 11 11234445555555555 23322221 2
Q ss_pred CCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcc
Q 044882 666 LPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLER 745 (815)
Q Consensus 666 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 745 (815)
.+++|++|++++|......+ .....+..+++|++|++++ +.+..+|. ..+++|+.|++++ +.++.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~--N~l~~lp~-----------~~~~~L~~L~Ls~-N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSF--AGLEQVPK-----------GLPAKLRVLDLSS-NRLNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCS--SCCCSCCS-----------CCCSCCSCEECCS-CCCCS
T ss_pred cCCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCC--CCCCchhh-----------hhcCCCCEEECCC-CcCCC
Confidence 33455555555554322110 0001222236777777776 56667765 2347999999999 67888
Q ss_pred ccccCCCCCCCCeeeeCCC
Q 044882 746 LSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 746 l~~~~~~l~~L~~L~i~~c 764 (815)
+|. +..+++|++|+++++
T Consensus 287 ~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 287 APQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCC-TTSCCCCSCEECSST
T ss_pred Cch-hhhCCCccEEECcCC
Confidence 764 788899999999985
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-17 Score=170.44 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=134.5
Q ss_pred cccccccccccccccccC-cccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccc-ccc-ccccccCCCCCc
Q 044882 571 KCDNIRTLTVEEGIQSSS-SRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCK-RLE-ALPKGLHNLTSL 647 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~~L 647 (815)
.+++|+.+++++|.+.+. .+..+..+++|++|++++|......+..+..+++|++|++++|. +.+ .++..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 456677777777766654 55667778888888888887555566666667888888888884 333 355566778888
Q ss_pred CcEEecCCCCCCC--CCC-CCCCC-CCceEEEcCCc-chh-hhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccc
Q 044882 648 QELTIGRGVELPS--LKE-DGLPT-NLQSLTIEGNM-EIW-KSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKR 721 (815)
Q Consensus 648 ~~L~l~~~~~~~~--~~~-~~~~~-~L~~L~l~~~~-~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 721 (815)
++|++++|..++. ++. ...++ +|++|++++|. .+. ...+ ..+..+++|+.|++++| ..+.....
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~-~~l~~~~~------ 240 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDS-VMLKNDCF------ 240 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTC-TTCCGGGG------
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCC-CcCCHHHH------
Confidence 8888888854543 222 23456 88888888885 222 1111 24566788888888883 32322111
Q ss_pred cccCCCCCCccceEEecCCCCCccc-cccCCCCCCCCeeeeCCCCCCcccCCCC---CCCccceeeecCCcchHHHHhcc
Q 044882 722 LGTALPLPASLTSLWISGFPNLERL-SSSIVDLQNLASLYLGDCPKLKYFPEKG---LPSSLLQLDIWGCPLIEEKCRKD 797 (815)
Q Consensus 722 l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~~~~~~~ 797 (815)
..+..+++|+.|++++|..+..- ...+..+++|++|++++| ++..+ +..+|+.|+++ |+.++......
T Consensus 241 --~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~~~~ 312 (336)
T 2ast_B 241 --QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIARPT 312 (336)
T ss_dssp --GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTTCSS
T ss_pred --HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCccccCCc
Confidence 12345688888888887643221 124667888888888887 44322 23457778875 44455544444
Q ss_pred CCCcccc
Q 044882 798 GGQYWDL 804 (815)
Q Consensus 798 ~~~~w~~ 804 (815)
.+..|..
T Consensus 313 ~~~~~~~ 319 (336)
T 2ast_B 313 IGNKKNQ 319 (336)
T ss_dssp CSSTTCC
T ss_pred ccccccc
Confidence 4444444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-16 Score=166.90 Aligned_cols=120 Identities=16% Similarity=0.091 Sum_probs=88.7
Q ss_pred CceEEccccCCcCcCCCccccccccccCC--CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCc--cchhhhccC
Q 044882 124 HLRTFLPVTLSNSSRGHLAYSILPKLFKL--QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRT--LPESVNKLY 199 (815)
Q Consensus 124 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~ 199 (815)
.++.+.+.+.. +. +..+..+ +++++|++++|.+...+..+..+++|++|++++|.+.. +|..+..++
T Consensus 48 ~~~~l~l~~~~------~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKN------LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCB------CC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hheeecccccc------CC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 46666655432 21 2333445 78999999999988776667789999999999998873 788889999
Q ss_pred CCcEEeccCCccccccchhhcCcCCcceeeccCCCccc--ccccccccccccccc
Q 044882 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE--EMPVGIGRLTSLQTL 252 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L 252 (815)
+|++|++++|......|..++++++|++|++++|..+. .+|..++.+++|++|
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 99999999995444678888899999999999984344 245445566666665
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=142.43 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=75.7
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
++.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC
Confidence 34444444444444444555555555555555554444444455555555555555555444444455555555555555
Q ss_pred CCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccce
Q 044882 655 GVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTS 734 (815)
Q Consensus 655 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 734 (815)
| .++.++. ..+..+++|+.|++++ +.+..++. ..+..+++|+.
T Consensus 117 N-~l~~~~~--------------------------~~~~~l~~L~~L~Ls~--N~l~~~~~--------~~~~~l~~L~~ 159 (251)
T 3m19_A 117 N-QLKSLPS--------------------------GVFDRLTKLKELRLNT--NQLQSIPA--------GAFDKLTNLQT 159 (251)
T ss_dssp S-CCCCCCT--------------------------TTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTCCE
T ss_pred C-cCCCcCh--------------------------hHhccCCcccEEECcC--CcCCccCH--------HHcCcCcCCCE
Confidence 5 3333322 1234444555555544 34444443 22334455555
Q ss_pred EEecCCCCCccccc-cCCCCCCCCeeeeCCC
Q 044882 735 LWISGFPNLERLSS-SIVDLQNLASLYLGDC 764 (815)
Q Consensus 735 L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c 764 (815)
|++++ +.++.+++ .+..+++|++|+++++
T Consensus 160 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 160 LSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 55555 34444443 4555566666666553
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.6e-15 Score=148.98 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=110.3
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+++|++|++++|.+..+|. +..+++|++|++++|.++.++. ++++++|++|++++| .+..+|. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 456778888888888877753 7778888888888888887766 778888888888887 6666665 77888888888
Q ss_pred ccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeE
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 309 (815)
+++|. +..++ .++.+++|+.|+ ++
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~~L~------------------------------------------------------l~ 142 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLESLY------------------------------------------------------LG 142 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCEEE------------------------------------------------------CC
T ss_pred CCCCc-CCCCh-hhcCCCCCCEEE------------------------------------------------------cc
Confidence 88876 55442 355555555542 22
Q ss_pred EccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 044882 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHL 389 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 389 (815)
+|..++ +..+..+++|+.|++++|.+..++. +. .+++|+.|++++|.+.. ++.+..+++|+.|
T Consensus 143 ~n~l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L 205 (291)
T 1h6t_A 143 NNKITD-------------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVL 205 (291)
T ss_dssp SSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred CCcCCc-------------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 221100 0122234455556666666555554 32 47777778877776544 4556777778888
Q ss_pred eeccCC
Q 044882 390 AVCGMS 395 (815)
Q Consensus 390 ~l~~~~ 395 (815)
++++|+
T Consensus 206 ~l~~n~ 211 (291)
T 1h6t_A 206 ELFSQE 211 (291)
T ss_dssp EEEEEE
T ss_pred ECcCCc
Confidence 877763
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=142.23 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=101.7
Q ss_pred CCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEc
Q 044882 597 RQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIE 676 (815)
Q Consensus 597 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 676 (815)
++++.|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.++.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------- 100 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPL------------- 100 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCT-------------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccCh-------------
Confidence 34555555555444444444455555555555555544444444455555555555555 2222211
Q ss_pred CCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCC
Q 044882 677 GNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQN 755 (815)
Q Consensus 677 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~ 755 (815)
..+..+++|+.|++++ +.+..++. ..+..+++|+.|++++ +.++.+++ .+..+++
T Consensus 101 -------------~~~~~l~~L~~L~L~~--N~l~~~~~--------~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 101 -------------GVFDHLTQLDKLYLGG--NQLKSLPS--------GVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTN 156 (251)
T ss_dssp -------------TTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred -------------hHhcccCCCCEEEcCC--CcCCCcCh--------hHhccCCcccEEECcC-CcCCccCHHHcCcCcC
Confidence 3466778888888887 56777766 3456789999999999 68888887 6889999
Q ss_pred CCeeeeCCCCCCcccCCCC--CCCccceeeecCCcc
Q 044882 756 LASLYLGDCPKLKYFPEKG--LPSSLLQLDIWGCPL 789 (815)
Q Consensus 756 L~~L~i~~c~~l~~l~~~~--~~~~L~~L~i~~c~~ 789 (815)
|++|++++ +.++.++... .+++|+.|++++|+-
T Consensus 157 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 157 LQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 99999998 4788887633 358999999999774
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-16 Score=168.31 Aligned_cols=241 Identities=13% Similarity=0.112 Sum_probs=154.2
Q ss_pred cccceEEEeccCCcccCchhh--hcCCCCCcceEEEeccC--CchhhhccccccccceE--ecccccccccccccccccc
Q 044882 513 SVLKKIEIRECDALKSLPEAW--MCGTNSSLEDMSIRQCH--SLTYIAAVQLPLSLKNL--LIHKCDNIRTLTVEEGIQS 586 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~--~~~~l~~L~~L~l~~~~--~l~~~~~~~l~~~L~~l--~l~~~~~L~~l~ls~n~~~ 586 (815)
++|++|++++|......+..+ ....+++|+.|++++|. .+.. .+|..++.+ .+..+++|+.|++++|.+.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~----~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD----EIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGG----GSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcccc----chhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 456777777765333322211 01567888888888873 2211 111111111 1346788888888888887
Q ss_pred c----CcccccCCCCCCceEEeccCCCccc----ccCCCCCC---------CCcceEEecccccc-cccc---cccCCCC
Q 044882 587 S----SSRSGLHNLRQLQEISIRRCGNLVS----FPEGGLPC---------AKLTRLEISSCKRL-EALP---KGLHNLT 645 (815)
Q Consensus 587 ~----~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l~ 645 (815)
+ .++..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+. ..++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 7 4566778889999999999976432 22222223 79999999999876 3444 4566888
Q ss_pred CcCcEEecCCCCCC------CCC-CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcc
Q 044882 646 SLQELTIGRGVELP------SLK-EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKAD 718 (815)
Q Consensus 646 ~L~~L~l~~~~~~~------~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 718 (815)
+|++|++++| .++ ..+ ....+++|++|++++|..........+..+..+++|+.|++++ +.+.....
T Consensus 188 ~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~--n~i~~~~~--- 261 (386)
T 2ca6_A 188 LLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND--CLLSARGA--- 261 (386)
T ss_dssp TCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT--CCCCHHHH---
T ss_pred CcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC--CCCchhhH---
Confidence 9999999999 444 223 3456789999999999864322222224577889999999998 33433211
Q ss_pred ccccccCC--CCCCccceEEecCCCCCcc-----ccccC-CCCCCCCeeeeCCCC
Q 044882 719 DKRLGTAL--PLPASLTSLWISGFPNLER-----LSSSI-VDLQNLASLYLGDCP 765 (815)
Q Consensus 719 ~~~l~~~~--~~~~~L~~L~l~~c~~l~~-----l~~~~-~~l~~L~~L~i~~c~ 765 (815)
..+...+ ..+++|+.|++++| .++. +|..+ .++++|++|++++|+
T Consensus 262 -~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 262 -AAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -HHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -HHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 0011122 23789999999995 4554 77766 568999999999863
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-16 Score=164.37 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=136.0
Q ss_pred ccccCCCceEEccccCCcCcCCCcccc----ccccccCCCcccEEEcCCCCccc----cCccc-------cCCccCCEEe
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYS----ILPKLFKLQRLRAFSLRGYHIFE----LPDSI-------GDLRYLRYLN 182 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~i~~----lp~~~-------~~l~~L~~L~ 182 (815)
.+..+++|+.|.+.++. +... +...+..+++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 27 ~l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHhcCCCccEEECCCCC------CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 44567778888776643 3222 33345677888888888865442 23333 6778888888
Q ss_pred cCCCCCCc-----cchhhhccCCCcEEeccCCcccc-----ccchhhcCc---------CCcceeeccCCCcc-cccc--
Q 044882 183 LSGTEIRT-----LPESVNKLYNLHSLLLEDCDRLK-----KLCADMGNL---------AKLHHLKNSNTKSL-EEMP-- 240 (815)
Q Consensus 183 L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L---------~~L~~L~l~~~~~l-~~~p-- 240 (815)
|++|.+.. +|..+.++++|++|+|++| .+. .++..+..+ ++|++|++++|..- ..+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 88888775 6777788888888888887 343 233334444 78888888887722 2333
Q ss_pred -cccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCC
Q 044882 241 -VGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSS 319 (815)
Q Consensus 241 -~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 319 (815)
..+..+++|++|+..... +.. ..........+..+++|+.|++++|..+
T Consensus 180 ~~~l~~~~~L~~L~L~~n~------------------------l~~-~g~~~l~~~~l~~~~~L~~L~Ls~n~l~----- 229 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNG------------------------IRP-EGIEHLLLEGLAYCQELKVLDLQDNTFT----- 229 (386)
T ss_dssp HHHHHHCTTCCEEECCSSC------------------------CCH-HHHHHHHHTTGGGCTTCCEEECCSSCCH-----
T ss_pred HHHHHhCCCcCEEECcCCC------------------------CCH-hHHHHHHHHHhhcCCCccEEECcCCCCC-----
Confidence 235556666666321110 000 0000111224556667777777766541
Q ss_pred chhhHHHHHhhcCCCCCCcccEEEeecCCCCC-----CccCCCCCCCCccEEEEecCCCCC----CCC-CC-CCCCCcCe
Q 044882 320 REAEIEKDVLNMLKPHENLEQFCISGYGGTKF-----PTWFGDSSFSNLVTLEFENCDMCT----ALP-SV-GQLPSLKH 388 (815)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l-~~l~~L~~ 388 (815)
..........+...++|+.|++++|.+... |.++....+++|++|++++|.+.. .++ .+ .++++|++
T Consensus 230 --~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 230 --HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp --HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred --cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 000123334555666777777777665432 333321135677777777777655 233 33 44677777
Q ss_pred eeeccCC
Q 044882 389 LAVCGMS 395 (815)
Q Consensus 389 L~l~~~~ 395 (815)
|++++|.
T Consensus 308 L~l~~N~ 314 (386)
T 2ca6_A 308 LELNGNR 314 (386)
T ss_dssp EECTTSB
T ss_pred EEccCCc
Confidence 7777663
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-14 Score=142.39 Aligned_cols=120 Identities=21% Similarity=0.369 Sum_probs=94.7
Q ss_pred cccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhcc
Q 044882 119 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKL 198 (815)
Q Consensus 119 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L 198 (815)
..++++|+.|.+.++. + ...+.+..+++|++|++++|.++.++. +.++++|++|++++|.++.+|. ++.+
T Consensus 42 ~~~l~~L~~L~l~~~~------i--~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD------I--KSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHHHHTCCEEECTTSC------C--CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred hhhcCcccEEEccCCC------c--ccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence 4467778888776653 1 122457788999999999999998876 8999999999999999988765 8999
Q ss_pred CCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccc
Q 044882 199 YNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 199 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
++|++|++++| .+..++ .++.+++|++|++++|. +..+ ..++.+++|+.|
T Consensus 112 ~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 112 KKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp TTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEE
T ss_pred CCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEE
Confidence 99999999999 777775 48899999999999987 5555 345666666655
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-14 Score=143.49 Aligned_cols=166 Identities=19% Similarity=0.242 Sum_probs=91.0
Q ss_pred CCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeecc
Q 044882 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 231 (815)
+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. ++++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 444555555555555554 4555566666666666665555 4555666666666655 4555554 5556666666666
Q ss_pred CCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEc
Q 044882 232 NTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWT 311 (815)
Q Consensus 232 ~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 311 (815)
+|. +..+|.... ++|+.| ++++|
T Consensus 94 ~N~-l~~l~~~~~--~~L~~L------------------------------------------------------~L~~N 116 (263)
T 1xeu_A 94 RNR-LKNLNGIPS--ACLSRL------------------------------------------------------FLDNN 116 (263)
T ss_dssp SSC-CSCCTTCCC--SSCCEE------------------------------------------------------ECCSS
T ss_pred CCc-cCCcCcccc--CcccEE------------------------------------------------------EccCC
Confidence 554 333332111 222222 22222
Q ss_pred cCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeee
Q 044882 312 LSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAV 391 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l 391 (815)
..+ .++.+..+++|+.|++++|.+..++ .+. .+++|+.|++++|.+.+. +.+..+++|+.|++
T Consensus 117 ~l~-------------~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 117 ELR-------------DTDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp CCS-------------BSGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEE
T ss_pred ccC-------------CChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeC
Confidence 210 0012233445555555566555555 232 477888888888877655 66777888888888
Q ss_pred ccCC
Q 044882 392 CGMS 395 (815)
Q Consensus 392 ~~~~ 395 (815)
++|.
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 8774
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=157.58 Aligned_cols=97 Identities=23% Similarity=0.368 Sum_probs=67.2
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+++|+.|++++|.+..+| .++.+++|++|+|++|.+..+|. ++.+++|++|+|++| .+..+| .++.+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 45667777777777777765 47777777777777777777765 777777777777777 666665 477777777777
Q ss_pred ccCCCcccccccccccccccccc
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+++|. +..+| .+..+++|+.|
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESL 136 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEE
T ss_pred ecCCC-CCCCc-cccCCCccCEE
Confidence 77776 44442 35555555555
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-14 Score=133.69 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=71.6
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .++.+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45677888888888888777 6788888888888888776664 677888888888888833334677788888888888
Q ss_pred ccCCCcccccccccccccccccc
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+++|......|..++.+++|++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEE
Confidence 88887322344444444444444
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=130.64 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=36.6
Q ss_pred EEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCccccccchh-hcCcCCcceeeccCCC
Q 044882 157 AFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNTK 234 (815)
Q Consensus 157 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 234 (815)
.++++++.++.+|..+. .+|++|++++|.++.+|. .++++++|++|++++| .+..+|.. ++.+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 44444455555544332 355555555555554442 2345555555555555 34444432 3455555555555554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=131.30 Aligned_cols=147 Identities=17% Similarity=0.177 Sum_probs=71.8
Q ss_pred cccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSG 592 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~ 592 (815)
++|++|++++|.. ..++ .+ ..+++|++|++++| .++.++ .
T Consensus 44 ~~L~~L~l~~n~i-~~l~-~l--~~l~~L~~L~l~~n-~~~~~~-----------------------------------~ 83 (197)
T 4ezg_A 44 NSLTYITLANINV-TDLT-GI--EYAHNIKDLTINNI-HATNYN-----------------------------------P 83 (197)
T ss_dssp HTCCEEEEESSCC-SCCT-TG--GGCTTCSEEEEESC-CCSCCG-----------------------------------G
T ss_pred CCccEEeccCCCc-cChH-HH--hcCCCCCEEEccCC-CCCcch-----------------------------------h
Confidence 5677777777653 3444 22 56677777777777 222111 2
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCce
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQS 672 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 672 (815)
+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|..++.++....+++|++
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~ 163 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCE
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCE
Confidence 33344444555544443333444444445555555555544444444444455555555555533444443344445555
Q ss_pred EEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 673 LTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 673 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
|++++|..... ..+..+++|+.|++++
T Consensus 164 L~l~~n~i~~~------~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 164 LNIQFDGVHDY------RGIEDFPKLNQLYAFS 190 (197)
T ss_dssp EECTTBCCCCC------TTGGGCSSCCEEEECB
T ss_pred EECCCCCCcCh------HHhccCCCCCEEEeeC
Confidence 55555432210 1344455555555554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-15 Score=158.87 Aligned_cols=237 Identities=13% Similarity=0.082 Sum_probs=117.0
Q ss_pred cccceEEEeccCCcccCch----hhhcCCCC-CcceEEEeccCCchhhhccccccccceEeccc-ccccccccccccccc
Q 044882 513 SVLKKIEIRECDALKSLPE----AWMCGTNS-SLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHK-CDNIRTLTVEEGIQS 586 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~----~~~~~~l~-~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~-~~~L~~l~ls~n~~~ 586 (815)
++|++|++++|. ++..+. ..+ ..++ +|++|++++|. ++......+... +.. +++|+.|++++|.++
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-----l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAF-ANTPASVTSLNLSGNS-LGFKNSDELVQI-----LAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHH-HTCCTTCCEEECCSSC-GGGSCHHHHHHH-----HHTSCTTCCEEECCSSCGG
T ss_pred CCceEEEccCCC-CChHHHHHHHHHH-HhCCCceeEEECcCCC-CCHHHHHHHHHH-----HhccCCCccEEECcCCcCC
Confidence 346666666665 333322 111 3455 66777776662 222221111100 111 255666666666666
Q ss_pred cCcccccC----CC-CCCceEEeccCCCcccccCC----CCC-CCCcceEEeccccccc----ccccccCCCC-CcCcEE
Q 044882 587 SSSRSGLH----NL-RQLQEISIRRCGNLVSFPEG----GLP-CAKLTRLEISSCKRLE----ALPKGLHNLT-SLQELT 651 (815)
Q Consensus 587 ~~~~~~~~----~l-~~L~~L~l~~~~~l~~~~~~----~~~-l~~L~~L~l~~~~~~~----~~~~~~~~l~-~L~~L~ 651 (815)
+..+..+. .+ ++|++|++++|......+.. +.. .++|++|++++|.+.. .++..+..++ +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 55544332 23 66777777777643322211 122 2467777777776553 2233334444 677777
Q ss_pred ecCCCCCCCCCCC------CCC-CCCceEEEcCCcchhhhhhhcCcCccc-CCCccEEEEeccCCCcccCCCCccccccc
Q 044882 652 IGRGVELPSLKED------GLP-TNLQSLTIEGNMEIWKSMIERGRGFHR-FSSLRQLTIINCDDDMVSFPPKADDKRLG 723 (815)
Q Consensus 652 l~~~~~~~~~~~~------~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 723 (815)
+++| .++..... ... ++|++|++++|..........+..+.. .++|++|++++ +.+...+. +.+.
T Consensus 174 Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~l~~~~~----~~l~ 246 (362)
T 3goz_A 174 LRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL--NCLHGPSL----ENLK 246 (362)
T ss_dssp CTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS--SCCCCCCH----HHHH
T ss_pred ecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC--CCCCcHHH----HHHH
Confidence 7777 33322110 122 467777777776433211111123333 24677777776 34444332 2222
Q ss_pred cCCCCCCccceEEecCCC-------CCccccccCCCCCCCCeeeeCCC
Q 044882 724 TALPLPASLTSLWISGFP-------NLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 724 ~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
..+..+++|+.|++++|. .+..++..+..+++|+.|+++++
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 233455677777777753 12334445666777777777764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=149.86 Aligned_cols=58 Identities=10% Similarity=0.018 Sum_probs=38.2
Q ss_pred CCcccEEEeecCCCCCCccCCCCCCCCc-------cEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCce
Q 044882 336 ENLEQFCISGYGGTKFPTWFGDSSFSNL-------VTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVK 398 (815)
Q Consensus 336 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 398 (815)
++|+.|++++|.+..+|. +.. +| +.|++++|.+....+.+..+++|+.|++++|+..+
T Consensus 180 ~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 567777777777777776 431 55 88888888766433356667888888888775433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=145.67 Aligned_cols=183 Identities=17% Similarity=0.248 Sum_probs=120.4
Q ss_pred CCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCC
Q 044882 539 SSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGL 618 (815)
Q Consensus 539 ~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 618 (815)
.+++.|++++|. ++.++. .+ .++|+.|++++|.+.+ +| ..+++|++|++++|... .+|. +.
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~-----~l-------~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~-~ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPD-----NL-------PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLS-TLPE-LP 119 (571)
T ss_dssp TTCSEEECCSSC-CSCCCS-----CC-------CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC-CC
T ss_pred CCccEEEeCCCC-CCccCH-----hH-------cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCC-Ccch-hh
Confidence 378888888874 333332 11 2467777777777773 33 34678888888888644 4666 44
Q ss_pred CCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCc
Q 044882 619 PCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSL 698 (815)
Q Consensus 619 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 698 (815)
. +|++|++++|.+.+ +|. .+++|+.|++++| .++.+|. .+++|++|++++|.... . +. +. ++|
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~--l---p~-l~--~~L 182 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTF--L---PE-LP--ESL 182 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSC--C---CC-CC--TTC
T ss_pred c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCC--c---ch-hh--CCC
Confidence 4 88888888888655 555 5788888888888 4555665 56788888888886433 1 12 33 788
Q ss_pred cEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCC
Q 044882 699 RQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCP 765 (815)
Q Consensus 699 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 765 (815)
+.|++++ +.+..+|. ... .....++.|+.|++++ |.++.+|..+..+++|+.|++++|+
T Consensus 183 ~~L~Ls~--N~L~~lp~--~~~---~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 183 EALDVST--NLLESLPA--VPV---RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CEEECCS--SCCSSCCC--CC-----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CEEECcC--CCCCchhh--HHH---hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 8888887 56666664 000 0011223338888888 5777888877778888888888864
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=129.46 Aligned_cols=159 Identities=17% Similarity=0.047 Sum_probs=87.1
Q ss_pred ccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEec
Q 044882 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG 653 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 653 (815)
+++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555555555556666777777777665443333344566677777777776555444455666777777777
Q ss_pred CCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCc
Q 044882 654 RGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPAS 731 (815)
Q Consensus 654 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 731 (815)
+| .++.++. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+ ...+++
T Consensus 109 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~--N~~---------------~~~~~~ 166 (208)
T 2o6s_A 109 TN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHD--NPW---------------DCTCPG 166 (208)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS--CCB---------------CCCTTT
T ss_pred CC-cCcccCHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecC--CCe---------------ecCCCC
Confidence 66 3443333 2345566666666664332111 2345566666666665 111 013455
Q ss_pred cceEEecCCCCCccccccCCCCC
Q 044882 732 LTSLWISGFPNLERLSSSIVDLQ 754 (815)
Q Consensus 732 L~~L~l~~c~~l~~l~~~~~~l~ 754 (815)
|+.|+++.+..-..+|..++.++
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHHHHhCCceeeccCcccc
Confidence 66666666444455665554443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=153.01 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=137.0
Q ss_pred cccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcC
Q 044882 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQ 648 (815)
Q Consensus 569 l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 648 (815)
+..+++|+.|++++|.+.... .+..+++|+.|+|++|.... ++. +..+++|+.|+|++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 456778888888888877653 57889999999999997544 333 7788999999999998654 43 688899999
Q ss_pred cEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCC
Q 044882 649 ELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPL 728 (815)
Q Consensus 649 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (815)
.|++++| .+..++....+++|+.|+|++|..... ..+..+++|+.|++++ +.+..++. +..
T Consensus 113 ~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~--N~l~~~~~----------l~~ 173 (605)
T 1m9s_A 113 SLSLEHN-GISDINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLED--NQISDIVP----------LAG 173 (605)
T ss_dssp EEECTTS-CCCCCGGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCS--SCCCCCGG----------GTT
T ss_pred EEEecCC-CCCCCccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcC--CcCCCchh----------hcc
Confidence 9999999 566677677889999999999975432 3577889999999998 45544432 357
Q ss_pred CCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCC
Q 044882 729 PASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPE 772 (815)
Q Consensus 729 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 772 (815)
+++|+.|+|++ +.++.++ .+..+++|+.|++++| .+...|.
T Consensus 174 l~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 174 LTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CTTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred CCCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 78999999999 5777776 6888999999999986 4444443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-13 Score=127.61 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=50.6
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 233 (815)
+.++++++.++.+|..+. .+|++|++++|.|+.+| ..+..+++|++|+|++| .+..+ |..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666666666665554 46666666666666665 35666666666666666 34433 555666666666666666
Q ss_pred Cccccccc
Q 044882 234 KSLEEMPV 241 (815)
Q Consensus 234 ~~l~~~p~ 241 (815)
. +..+|.
T Consensus 91 ~-l~~l~~ 97 (220)
T 2v9t_B 91 K-ITELPK 97 (220)
T ss_dssp C-CCCCCT
T ss_pred c-CCccCH
Confidence 5 444444
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-13 Score=128.55 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=36.3
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchh-hcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 233 (815)
+.++.+++.++.+|..+. .+|++|+|++|.|..+ |..++++++|++|+|++| .+..+|.. +..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 344444445555544332 4455555555555443 344455555555555554 34444422 344555555555554
Q ss_pred C
Q 044882 234 K 234 (815)
Q Consensus 234 ~ 234 (815)
.
T Consensus 99 ~ 99 (229)
T 3e6j_A 99 Q 99 (229)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.6e-15 Score=155.01 Aligned_cols=255 Identities=14% Similarity=0.100 Sum_probs=167.9
Q ss_pred EEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccc-ccccccccccccccCcccccCCC
Q 044882 518 IEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCD-NIRTLTVEEGIQSSSSRSGLHNL 596 (815)
Q Consensus 518 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~-~L~~l~ls~n~~~~~~~~~~~~l 596 (815)
+.++.+...+.+|... ...++|++|++++|. ++..+...+... +.+++ +|+.|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~--~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-----l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT--SIPHGVTSLDLSLNN-LYSISTVELIQA-----FANTPASVTSLNLSGNSLGFKNSDELVQI 74 (362)
T ss_dssp EECCCCTTCCHHHHHH--TSCTTCCEEECTTSC-GGGSCHHHHHHH-----HHTCCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred cccccccchHHHHHHH--hCCCCceEEEccCCC-CChHHHHHHHHH-----HHhCCCceeEEECcCCCCCHHHHHHHHHH
Confidence 4566666555555544 566779999999995 444433111111 34566 89999999999988877777664
Q ss_pred -----CCCceEEeccCCCcccccCC----CCCC-CCcceEEecccccccccccc----cCC-CCCcCcEEecCCCCCCCC
Q 044882 597 -----RQLQEISIRRCGNLVSFPEG----GLPC-AKLTRLEISSCKRLEALPKG----LHN-LTSLQELTIGRGVELPSL 661 (815)
Q Consensus 597 -----~~L~~L~l~~~~~l~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~ 661 (815)
++|++|++++|......+.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++| .++..
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 153 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIK 153 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGS
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHH
Confidence 99999999999855443332 3334 79999999999976655433 344 369999999999 44421
Q ss_pred C-----CC--CCCCCCceEEEcCCcchhhhhhhcCcCcccC-CCccEEEEeccCCCcccCCCCccccccccCCCC-CCcc
Q 044882 662 K-----ED--GLPTNLQSLTIEGNMEIWKSMIERGRGFHRF-SSLRQLTIINCDDDMVSFPPKADDKRLGTALPL-PASL 732 (815)
Q Consensus 662 ~-----~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L 732 (815)
. .. ...++|++|++++|.............+... ++|+.|++++ +.+..... ..+...+.. +++|
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~----~~l~~~l~~~~~~L 227 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSY----AELAYIFSSIPNHV 227 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCH----HHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHH----HHHHHHHhcCCCCc
Confidence 1 11 1235999999999976543332212345566 5999999999 45554221 111112222 4699
Q ss_pred ceEEecCCCCCcccc-----ccCCCCCCCCeeeeCCCC--C-----CcccCC-CCCCCccceeeecCCc
Q 044882 733 TSLWISGFPNLERLS-----SSIVDLQNLASLYLGDCP--K-----LKYFPE-KGLPSSLLQLDIWGCP 788 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~-----~~~~~l~~L~~L~i~~c~--~-----l~~l~~-~~~~~~L~~L~i~~c~ 788 (815)
+.|++++| .++..+ ..+..+++|++|++++|. . +..++. ....++|+.|++++++
T Consensus 228 ~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 228 VSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred eEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99999994 565543 356788999999999974 1 222222 2235689999999987
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=121.03 Aligned_cols=124 Identities=18% Similarity=0.155 Sum_probs=104.0
Q ss_pred CCCceEEccccCCcCcCCCcc-ccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCc-cchhhhccC
Q 044882 122 IQHLRTFLPVTLSNSSRGHLA-YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRT-LPESVNKLY 199 (815)
Q Consensus 122 ~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~ 199 (815)
.++++.|.+.++. +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+++++
T Consensus 16 ~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 3567777776653 33 35666678999999999999999988 778999999999999999997 888888899
Q ss_pred CCcEEeccCCccccccc--hhhcCcCCcceeeccCCCccccccc----ccccccccccccc
Q 044882 200 NLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCN 254 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~ 254 (815)
+|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|+.|+.
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 9999999999 677765 779999999999999998 777775 5888888888853
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=121.36 Aligned_cols=127 Identities=21% Similarity=0.170 Sum_probs=102.4
Q ss_pred CCCceEEccccCCcCcCCCcc-ccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCc-cchhhhccC
Q 044882 122 IQHLRTFLPVTLSNSSRGHLA-YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRT-LPESVNKLY 199 (815)
Q Consensus 122 ~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~ 199 (815)
.++++.|.+.++. +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+++++
T Consensus 23 ~~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 3677777776653 32 35566668889999999999998887 778889999999999999987 778788899
Q ss_pred CCcEEeccCCccccccc--hhhcCcCCcceeeccCCCccccccc----ccccccccccccceee
Q 044882 200 NLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVV 257 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~ 257 (815)
+|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|+.|+....
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999999998 777776 678899999999999998 777776 5888888888865443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-13 Score=134.19 Aligned_cols=170 Identities=20% Similarity=0.216 Sum_probs=110.8
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEe
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 652 (815)
.++..+.++.|.+.+.. .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34455555555555433 45567777888888775 44455 56667788888888877654433 777788888888
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 653 GRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 653 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
++| .++.++.... ++|+.|++++|..... ..+..+++|+.|++++ +.+..++. +..+++|
T Consensus 93 ~~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~--N~i~~~~~----------l~~l~~L 152 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRN--NKLKSIVM----------LGFLSKL 152 (263)
T ss_dssp CSS-CCSCCTTCCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTT--SCCCBCGG----------GGGCTTC
T ss_pred CCC-ccCCcCcccc-CcccEEEccCCccCCC------hhhcCcccccEEECCC--CcCCCChH----------HccCCCC
Confidence 887 4555555444 7788888887754331 2466778888888877 55555432 2456788
Q ss_pred ceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccC
Q 044882 733 TSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFP 771 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~ 771 (815)
+.|++++ +.++.+ ..+..+++|+.|+++++ .+...|
T Consensus 153 ~~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 153 EVLDLHG-NEITNT-GGLTRLKKVNWIDLTGQ-KCVNEP 188 (263)
T ss_dssp CEEECTT-SCCCBC-TTSTTCCCCCEEEEEEE-EEECCC
T ss_pred CEEECCC-CcCcch-HHhccCCCCCEEeCCCC-cccCCc
Confidence 8888888 556666 46777888888888774 344333
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-12 Score=122.97 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=67.4
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++++|+.|++++|.+++..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 34555566666666666555556666666777777766654444445666667777777777666665666666677777
Q ss_pred EEecCCCCCCCC-CC-CCCCCCCceEEEcCCcc
Q 044882 650 LTIGRGVELPSL-KE-DGLPTNLQSLTIEGNME 680 (815)
Q Consensus 650 L~l~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~ 680 (815)
|++++|. ++.+ +. ...+++|+.|++++|+.
T Consensus 134 L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 134 LSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 7777663 3333 22 24566677777776653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=126.10 Aligned_cols=124 Identities=22% Similarity=0.305 Sum_probs=101.3
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccch-hhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~ 200 (815)
++++.|.+.++. +....+..|..+++|++|+|++|.+..+| ..|..+++|++|+|++|.|+.+|. .+..+++
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 678888777654 44445666788899999999999998886 456889999999999999998874 4688999
Q ss_pred CcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccc-cccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVG-IGRLTSLQTLCN 254 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 254 (815)
|++|+|++| .+..+|..+..+++|++|++++|. +..+|.. +..+++|+.|+.
T Consensus 114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred hCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 999999998 788999889999999999999987 7777754 778888887743
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=120.84 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=106.0
Q ss_pred cccccCCCceEEccccCCcCcCCCccccccccccCCC-cccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhh
Q 044882 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV 195 (815)
Q Consensus 117 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 195 (815)
..+.++.+++.|.+.++. +. .+ +.+..+. +|++|++++|.++.+ ..++.+++|++|++++|.|+.+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~------l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK------IP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSC------CC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCC------Cc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 445678889999887754 22 22 4454444 999999999999988 67899999999999999999998555
Q ss_pred -hccCCCcEEeccCCccccccch--hhcCcCCcceeeccCCCcccccccc----ccccccccccccee
Q 044882 196 -NKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNSNTKSLEEMPVG----IGRLTSLQTLCNFV 256 (815)
Q Consensus 196 -~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~ 256 (815)
+.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|+...
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 99999999999999 7888887 78999999999999998 7778875 88888898886543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=135.64 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=67.1
Q ss_pred cccccccccccccCcccccC-CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEec
Q 044882 575 IRTLTVEEGIQSSSSRSGLH-NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG 653 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 653 (815)
++.|++++|.+++..+..+. ++++|++|+|++|......+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 34444455555444444454 56666666666665444434455556666666666666544444455566666666666
Q ss_pred CCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCC
Q 044882 654 RGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPP 715 (815)
Q Consensus 654 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 715 (815)
+|. +..++. ...+++|+.|++++|....... .....+..+++|+.|++++ +.+..++.
T Consensus 121 ~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~--N~l~~l~~ 180 (361)
T 2xot_A 121 NNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSS--NKLKKLPL 180 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCS--SCCCCCCH
T ss_pred CCc-ccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCC--CCCCccCH
Confidence 663 332211 2344455555555554322111 0001114466666666666 55555553
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=122.35 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=82.2
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++++|+.|++++|.+.+..+..|.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 44566777777777777777778888888888888888754333344677888888888888887777778888888888
Q ss_pred EEecCCCCCCCCCC--CCCCCCCceEEEcCCcc
Q 044882 650 LTIGRGVELPSLKE--DGLPTNLQSLTIEGNME 680 (815)
Q Consensus 650 L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~ 680 (815)
|++++| .++.++. ...+++|+.|++++|+.
T Consensus 133 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 133 LSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 888888 4444443 35677888888888864
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-12 Score=121.30 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=41.3
Q ss_pred cccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcE
Q 044882 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQEL 650 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 650 (815)
++++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 34444445555555544444444445555555555554433334444444555555555554444444444445555555
Q ss_pred EecCC
Q 044882 651 TIGRG 655 (815)
Q Consensus 651 ~l~~~ 655 (815)
++++|
T Consensus 159 ~L~~N 163 (220)
T 2v70_A 159 NLLAN 163 (220)
T ss_dssp ECCSC
T ss_pred EecCc
Confidence 55554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-12 Score=115.50 Aligned_cols=137 Identities=25% Similarity=0.272 Sum_probs=110.8
Q ss_pred cCCceeEEEeecccccccccccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccc-cCccccC
Q 044882 96 FSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFE-LPDSIGD 174 (815)
Q Consensus 96 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~ 174 (815)
.+..++.+.+..+......-...+..+++|+.|.+.++. +.. . ..+..+++|++|++++|.+.. +|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 456788888877654311112234678999999888764 222 2 677899999999999999997 7887888
Q ss_pred CccCCEEecCCCCCCccc--hhhhccCCCcEEeccCCccccccch----hhcCcCCcceeeccCCCcccccccc
Q 044882 175 LRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA----DMGNLAKLHHLKNSNTKSLEEMPVG 242 (815)
Q Consensus 175 l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p~~ 242 (815)
+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .+..+++|++|++++|. ...+|.+
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999999999887 78999999999999999 7778876 78999999999999998 6777654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.2e-12 Score=132.03 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=111.6
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
..+|..++..++.|++++|. +..++...+...+++|+.|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 31 ~~iP~~~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~---------~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 31 PNVPQSLPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE---------AFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp SSCCSSCCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSC
T ss_pred CccCccCCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChh---------hccCCCCCCEEECCCCc
Confidence 45556666778888888886 4445444331278888888888873 2322221 14567788888888888
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccccc---CCCCCcCcEEecCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGL---HNLTSLQELTIGRGVELPSL 661 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~ 661 (815)
+.+..+..|.++++|++|+|++|......+..+..+++|++|++++|.+....+..+ ..+++|+.|++++| .++.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCcc
Confidence 887777778888888888888887666667778888888888888888655433334 56888888888888 45544
Q ss_pred CCC--CCCCC--CceEEEcCCcc
Q 044882 662 KED--GLPTN--LQSLTIEGNME 680 (815)
Q Consensus 662 ~~~--~~~~~--L~~L~l~~~~~ 680 (815)
+.. ..++. ++.|++++|+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCE
T ss_pred CHHHhhhccHhhcceEEecCCCc
Confidence 421 23333 47788888764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-12 Score=143.29 Aligned_cols=108 Identities=27% Similarity=0.367 Sum_probs=96.8
Q ss_pred ccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCC
Q 044882 145 ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAK 224 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 224 (815)
.+..+..++.|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|++|++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCC
Confidence 34556899999999999999999999899999999999999999999999999999999999999 78899999999999
Q ss_pred cceeeccCCCcccccccccccccccccccc
Q 044882 225 LHHLKNSNTKSLEEMPVGIGRLTSLQTLCN 254 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 254 (815)
|++|++++|. +..+|.+++.|++|++|+.
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 9999999998 8899999999999999953
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.5e-12 Score=113.79 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=90.5
Q ss_pred cCCCcccEEEcCCCCcc--ccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccc-cchhhcCcCCcc
Q 044882 150 FKLQRLRAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKK-LCADMGNLAKLH 226 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~ 226 (815)
...++|++|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++| .+.. +|..++.+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 34578999999999998 8899999999999999999999988 78999999999999999 5665 888888899999
Q ss_pred eeeccCCCcccccc--cccccccccccccc
Q 044882 227 HLKNSNTKSLEEMP--VGIGRLTSLQTLCN 254 (815)
Q Consensus 227 ~L~l~~~~~l~~~p--~~i~~L~~L~~L~~ 254 (815)
+|++++|. +..+| ..++.+++|++|+.
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEEC
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeC
Confidence 99999998 77665 67889999998854
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-11 Score=112.12 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=56.1
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccCCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 234 (815)
++++++++.++.+|..+. .+|++|++++|.|+.+|..+.++++|++|+|++| .+..++ ..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 567777777777776553 4777777777777777777777777777777777 555554 346777777777777776
Q ss_pred cccccc
Q 044882 235 SLEEMP 240 (815)
Q Consensus 235 ~l~~~p 240 (815)
+..+|
T Consensus 90 -l~~i~ 94 (193)
T 2wfh_A 90 -LRCIP 94 (193)
T ss_dssp -CCBCC
T ss_pred -cCEeC
Confidence 44443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.5e-12 Score=144.39 Aligned_cols=121 Identities=25% Similarity=0.356 Sum_probs=103.8
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.+..++.|+.|.+.++. + ..++..+..+++|++|+|++|.++.+|..|++|++|++|+|++|.|+.+|..|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~------l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ------I-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ---CCCCCCEEECTTSC------C-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhccCCCCcEEECCCCC------C-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 35577888888887654 3 2566677899999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRL 246 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L 246 (815)
|++|++|+|++| .+..+|..|++|++|++|++++|...+.+|..+..+
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 999999999999 788999999999999999999999544556555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=133.74 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=85.9
Q ss_pred cccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCC
Q 044882 154 RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 233 (815)
.|++|+|++|.++.+|. ++.+++|++|+|++|.|+.+|..++++++|++|+|++| .+..+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 48899999999999887 89999999999999999999999999999999999998 777888 7999999999999999
Q ss_pred Cccccc--ccccccccccccccce
Q 044882 234 KSLEEM--PVGIGRLTSLQTLCNF 255 (815)
Q Consensus 234 ~~l~~~--p~~i~~L~~L~~L~~~ 255 (815)
. +..+ |..++.+++|+.|+..
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECT
T ss_pred C-CCCCCCcHHHhcCCCCCEEEec
Confidence 8 6666 7889999999988643
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=125.04 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=95.4
Q ss_pred ccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccc----ccccccccCCCCCc
Q 044882 572 CDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKR----LEALPKGLHNLTSL 647 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~l~~L 647 (815)
|++|+.+.+.+ .+..+....|.++++|+.+++.+|.....-+.+|..+.++..+....... ...-...+.++.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777766 56666666677777777777777665444444555555555554433211 00001112233333
Q ss_pred C-cEEecCCCCCCCCC--CC------------------------CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccE
Q 044882 648 Q-ELTIGRGVELPSLK--ED------------------------GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQ 700 (815)
Q Consensus 648 ~-~L~l~~~~~~~~~~--~~------------------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 700 (815)
+ .+.+.....+.... .. ..+++|+.+++++|...... . ..|.++++|++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~--~--~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP--D--FTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC--T--TTTTTCTTCCE
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec--H--hhhhCCCCCCE
Confidence 3 22222111100000 00 01456666666665422211 1 45666666666
Q ss_pred EEEeccCCCcccCCCCccccccccCCCCCCccc-eEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCCC--C
Q 044882 701 LTIINCDDDMVSFPPKADDKRLGTALPLPASLT-SLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKGL--P 776 (815)
Q Consensus 701 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~ 776 (815)
+++.+ + +..++. .+|..+++|+ .+++.+ .++.|+. .|.+|++|+.|++.+ ++++.++...+ .
T Consensus 255 l~l~~--n-i~~I~~--------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 255 IKLPH--N-LKTIGQ--------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNG 320 (329)
T ss_dssp EECCT--T-CCEECT--------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTT
T ss_pred EECCc--c-cceehH--------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCC
Confidence 66665 2 555555 3455566666 666665 4555554 566666666666654 45666655332 2
Q ss_pred Ccccee
Q 044882 777 SSLLQL 782 (815)
Q Consensus 777 ~~L~~L 782 (815)
++|+.+
T Consensus 321 ~~L~~l 326 (329)
T 3sb4_A 321 VPSKLI 326 (329)
T ss_dssp CCCCEE
T ss_pred cchhhh
Confidence 344444
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-11 Score=112.02 Aligned_cols=99 Identities=23% Similarity=0.401 Sum_probs=79.0
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 230 (815)
+.|++|++++|.++.+|..|..+++|++|+|++|.|+.++ ..+.++++|++|+|++| .+..+| ..++.+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 4688888888888888888888888888888888888776 56888888888888888 566655 45788888888888
Q ss_pred cCCCcccccccc-ccccccccccc
Q 044882 231 SNTKSLEEMPVG-IGRLTSLQTLC 253 (815)
Q Consensus 231 ~~~~~l~~~p~~-i~~L~~L~~L~ 253 (815)
++|. +..+|.+ +..+++|+.|+
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCC-CCeeChhhhhcCccccEEE
Confidence 8887 6777765 77777777774
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=113.24 Aligned_cols=104 Identities=28% Similarity=0.423 Sum_probs=89.9
Q ss_pred ccccCCCcccEEEcCCCCccccCccccCCc-cCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhh-cCcCC
Q 044882 147 PKLFKLQRLRAFSLRGYHIFELPDSIGDLR-YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAK 224 (815)
Q Consensus 147 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~ 224 (815)
+.+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++| .+..+|..+ +.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 345678899999999999998865 55555 999999999999988 68899999999999999 788888665 89999
Q ss_pred cceeeccCCCccccccc--ccccccccccccc
Q 044882 225 LHHLKNSNTKSLEEMPV--GIGRLTSLQTLCN 254 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~ 254 (815)
|++|++++|. +..+|. .++.+++|+.|+.
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEEC
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEe
Confidence 9999999998 788887 6888888888843
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=110.22 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=68.7
Q ss_pred cccEEEcCCCCccccCc--cccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccch-hhcCcCCcceee
Q 044882 154 RLRAFSLRGYHIFELPD--SIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLK 229 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 229 (815)
+|++|++++|.++.++. .++.+++|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|. .++++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 67777777777777754 267777777777777777765 567777777777777777 4555443 367777777777
Q ss_pred ccCCCccccccccccccccccccc
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
+++|......|..++.+++|+.|+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEE
Confidence 777773333455577777777664
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=109.53 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=44.3
Q ss_pred cccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcE
Q 044882 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQEL 650 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 650 (815)
++++|+.|++++|.+++..|..+.++++|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 34445555555555555555555555555555555555444444444455555555555555555445555555555555
Q ss_pred EecCC
Q 044882 651 TIGRG 655 (815)
Q Consensus 651 ~l~~~ 655 (815)
++++|
T Consensus 132 ~L~~N 136 (192)
T 1w8a_A 132 NLASN 136 (192)
T ss_dssp ECTTC
T ss_pred EeCCC
Confidence 55555
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=129.20 Aligned_cols=126 Identities=24% Similarity=0.237 Sum_probs=90.9
Q ss_pred ccccccCCCcccEEE-cCCCCccccCc------cccC--CccCCEEecCCCCCCccchhhhccCCCcEEeccCCcccccc
Q 044882 145 ILPKLFKLQRLRAFS-LRGYHIFELPD------SIGD--LRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKL 215 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~-L~~~~i~~lp~------~~~~--l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 215 (815)
.+..+..+++|+.|+ ++.+.+..++. .+.. ...|++|+|++|.++.+|. ++.+++|++|+|++| .+..+
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~l 478 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRAL 478 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCC
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-ccccc
Confidence 344557788888888 56554443321 1111 1358999999999999987 999999999999999 78899
Q ss_pred chhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCC---CCCcccccccccc
Q 044882 216 CADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGS---GSGLRELKLLTHL 274 (815)
Q Consensus 216 p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~---~~~~~~l~~L~~L 274 (815)
|..++++++|++|++++|. +..+| .++.+++|+.|+........ ...+..+++|+.|
T Consensus 479 p~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp CGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred chhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 9999999999999999998 77788 89999999998654433221 2334444444444
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=107.52 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=79.8
Q ss_pred cccccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccchh-hhccCCCcEEeccCCccccccchh-hc
Q 044882 144 SILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MG 220 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~ 220 (815)
.+|..+. ++|++|+|++|.++.+ |..|+++++|++|+|++|+|+.+|.. ++++++|++|+|++| .+..+|.. ++
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 102 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD 102 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhc
Confidence 3444443 7889999999999987 67789999999999999999988865 588999999999998 77788765 88
Q ss_pred CcCCcceeeccCCCccccccccccccc
Q 044882 221 NLAKLHHLKNSNTKSLEEMPVGIGRLT 247 (815)
Q Consensus 221 ~L~~L~~L~l~~~~~l~~~p~~i~~L~ 247 (815)
.+++|++|++++|. +...+..+..+.
T Consensus 103 ~l~~L~~L~L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 103 NLKSLTHIYLYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp TCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred cccCCCEEEeCCCC-cccccccHHHHH
Confidence 89999999999987 665555444433
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.8e-13 Score=125.80 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=75.1
Q ss_pred cccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcce
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 227 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 227 (815)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..++.+++|++|++++| .+..+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5667777888888888777777 777778888888888877777777777778888888877 666666 4777778888
Q ss_pred eeccCCCccccccc--cccccccccccc
Q 044882 228 LKNSNTKSLEEMPV--GIGRLTSLQTLC 253 (815)
Q Consensus 228 L~l~~~~~l~~~p~--~i~~L~~L~~L~ 253 (815)
|++++|. +..+|. .+..+++|++|+
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 8887776 555543 466666666663
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-12 Score=120.47 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=105.2
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.+..+++|+.|.+.++. +.. ++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+++
T Consensus 43 ~~~~l~~L~~L~ls~n~------l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN------IEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEE------ESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCC------Ccc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 56788999999887654 222 34 778899999999999999999998888999999999999999987 6999
Q ss_pred cCCCcEEeccCCccccccch--hhcCcCCcceeeccCCCcccccccc----------ccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNSNTKSLEEMPVG----------IGRLTSLQTLC 253 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----------i~~L~~L~~L~ 253 (815)
+++|++|++++| .+..+|. .++.+++|++|++++|......|.. +..+++|+.|+
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999999999 7777664 7899999999999999833333332 67788888885
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-10 Score=104.65 Aligned_cols=96 Identities=22% Similarity=0.387 Sum_probs=86.2
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchh-hcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 233 (815)
++++++++.++.+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|.. ++++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 789999999999998775 8999999999999988 578999999999999999 88888876 589999999999999
Q ss_pred Ccccccccc-cccccccccccce
Q 044882 234 KSLEEMPVG-IGRLTSLQTLCNF 255 (815)
Q Consensus 234 ~~l~~~p~~-i~~L~~L~~L~~~ 255 (815)
. +..+|.+ ++.+++|+.|+..
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECC
T ss_pred c-cceeCHHHhccccCCCEEEeC
Confidence 8 8888876 8899999998543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-10 Score=102.55 Aligned_cols=106 Identities=22% Similarity=0.132 Sum_probs=69.8
Q ss_pred ccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEec
Q 044882 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG 653 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 653 (815)
+++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 45555555555555555566777778888888776543333445677788888888877666555556777788888888
Q ss_pred CCCCCCCCCCC--CCCCCCceEEEcCCcc
Q 044882 654 RGVELPSLKED--GLPTNLQSLTIEGNME 680 (815)
Q Consensus 654 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 680 (815)
+| .++.++.. ..+++|++|++++|+.
T Consensus 109 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 109 TN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 77 44445442 4567777777777754
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-10 Score=103.45 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=55.7
Q ss_pred CcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccchh-hhccCCCcEEeccCCccccccchh-hcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 229 (815)
++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 5677777777777766 45567777777777777777766643 467777777777777 56666553 66777777777
Q ss_pred ccCCC
Q 044882 230 NSNTK 234 (815)
Q Consensus 230 l~~~~ 234 (815)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 77776
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=110.41 Aligned_cols=225 Identities=11% Similarity=0.091 Sum_probs=110.2
Q ss_pred CCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhc--------cCCCcEEeccCCccccccc-hhhcC
Q 044882 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNK--------LYNLHSLLLEDCDRLKKLC-ADMGN 221 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~--------L~~L~~L~L~~~~~l~~lp-~~i~~ 221 (815)
+++|++|||++|++..+...-+.+..++++.+..+. +| ..+.+ +++|+.|++.+ .+..++ ..|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 778888999888887221111223335555555553 33 44556 78888888876 455555 34777
Q ss_pred cCCcceeeccCCCcccccccc-cccccccccccceee------ccCCCCCccccccccccccceeeecccccCChhhhhh
Q 044882 222 LAKLHHLKNSNTKSLEEMPVG-IGRLTSLQTLCNFVV------GKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKE 294 (815)
Q Consensus 222 L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~------~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~ 294 (815)
+++|+.|++.++. +..++.. +..+.++..+..... .......+.++..|+ ..+. +...........
T Consensus 123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~---~~i~---~~~~~~l~~~~~ 195 (329)
T 3sb4_A 123 CDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE---TTIQ---VGAMGKLEDEIM 195 (329)
T ss_dssp CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE---EEEE---ECTTCCHHHHHH
T ss_pred CcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc---eeEE---ecCCCcHHHHHh
Confidence 8888888887776 4455544 555555555421110 000111122222111 0011 111111222222
Q ss_pred cccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCC
Q 044882 295 AQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMC 374 (815)
Q Consensus 295 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 374 (815)
..-....++..+.+.+.-. ......+. ..+++|+.+++.++.+..+|...+. .+++|+.+++.++ .
T Consensus 196 ~~~~~~~~~~~l~~~~~l~---------~~~~~~l~--~~~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n--i 261 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLD---------NADFKLIR--DYMPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN--L 261 (329)
T ss_dssp HTTCCGGGCSEEEEEECCC---------HHHHHHHH--HHCTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT--C
T ss_pred hcccCccccceEEEeeeec---------HHHHHHHH--HhcCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc--c
Confidence 2222344555555554321 00011110 1145677777776666666665543 4566666666665 2
Q ss_pred CCCC--CCCCCCCcC-eeeeccCCCceecCccc
Q 044882 375 TALP--SVGQLPSLK-HLAVCGMSRVKRLGSEF 404 (815)
Q Consensus 375 ~~l~--~l~~l~~L~-~L~l~~~~~~~~~~~~~ 404 (815)
..++ .|.++++|+ .+.+.+ .++.++...
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred ceehHHHhhCChhccEEEEEcc--cceEEchhh
Confidence 2233 566666666 666654 344444333
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.4e-10 Score=102.62 Aligned_cols=84 Identities=29% Similarity=0.396 Sum_probs=44.1
Q ss_pred cCCCcccEEEcCCCCccccCc-cccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCccccccchh-hcCcCCcc
Q 044882 150 FKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLH 226 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~ 226 (815)
..+++|++|++++|.++.+|. .++.+++|++|++++|.++.+|. .++++++|++|++++| .+..+|.. +..+++|+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccC
Confidence 455555555555555555542 24555555555555555555543 2455555555555555 44444443 24455555
Q ss_pred eeeccCCC
Q 044882 227 HLKNSNTK 234 (815)
Q Consensus 227 ~L~l~~~~ 234 (815)
+|++++|.
T Consensus 128 ~L~l~~N~ 135 (177)
T 2o6r_A 128 KIWLHTNP 135 (177)
T ss_dssp EEECCSSC
T ss_pred EEEecCCC
Confidence 55555554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-10 Score=102.80 Aligned_cols=98 Identities=24% Similarity=0.359 Sum_probs=85.4
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchh-hcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 232 (815)
.++++++++.++.+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 5789999999999998774 8999999999999988 577999999999999999 77788765 58999999999999
Q ss_pred CCcccccccc-ccccccccccccee
Q 044882 233 TKSLEEMPVG-IGRLTSLQTLCNFV 256 (815)
Q Consensus 233 ~~~l~~~p~~-i~~L~~L~~L~~~~ 256 (815)
|. +..+|.+ +..+++|+.|+...
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCC
Confidence 98 7788776 88999999986543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-08 Score=106.40 Aligned_cols=252 Identities=14% Similarity=0.193 Sum_probs=168.5
Q ss_pred ccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCccccc
Q 044882 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGL 593 (815)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~ 593 (815)
+|+.+.+.++ +..++...+ .+ .+|+.+.+.. .++.++.. .+.+|.+|+.+.++.|.+..+....|
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF-~~-~~L~~i~lp~--~l~~I~~~---------aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAF-FN-STVQEIVFPS--TLEQLKED---------IFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp CCSEEECCTT--CCEECTTTT-TT-CCCCEEECCT--TCCEECSS---------TTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred CccEEEeCCC--ccEECHHhc-CC-CCceEEEeCC--CccEehHH---------HhhCcccCCeeecCCCcceEechhhE
Confidence 4666666544 555554443 23 3577777764 33333322 35678888888888888777666666
Q ss_pred CCCCCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCCC--CCCCC
Q 044882 594 HNLRQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKED--GLPTN 669 (815)
Q Consensus 594 ~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~ 669 (815)
. ..+|+.+.+.++ ++.++ .+|..+++|+.+++.++ +..++ ..|.+ .+|+.+.+.++ ++.++.. ..+++
T Consensus 201 ~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 201 V-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPE 272 (401)
T ss_dssp T-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTT
T ss_pred e-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCC
Confidence 6 588999998754 44444 46778889999999875 33343 34555 78999999653 5555443 46789
Q ss_pred CceEEEcCCcchhhhh-hhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 670 LQSLTIEGNMEIWKSM-IERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 670 L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
|+.+++.++....... ......|.++++|+.+.+.+ ++..++. .+|..+++|+.+++.. +++.|..
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~--------~aF~~c~~L~~l~lp~--~l~~I~~ 339 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQ--------GLLGGNRKVTQLTIPA--NVTQINF 339 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECT--------TTTTTCCSCCEEEECT--TCCEECT
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhh--------hhhcCCCCccEEEECc--cccEEcH
Confidence 9999998775320000 01126789999999999975 4777776 5667889999999965 4888866
Q ss_pred -cCCCCCCCCeeeeCCCCCCcccCCC---CCCCccceeeecCCcchHHHHhccCCCccccccc
Q 044882 749 -SIVDLQNLASLYLGDCPKLKYFPEK---GLPSSLLQLDIWGCPLIEEKCRKDGGQYWDLLTH 807 (815)
Q Consensus 749 -~~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~~~~~~~~~~~w~~~~~ 807 (815)
.|.++ +|+.+++.++ .+..++.. +++.+++.|.|-.. -.+.++.+ ..|.....
T Consensus 340 ~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~--~~~~y~~a--~~W~~f~~ 396 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE--SVEKYKNA--NGWRDFTN 396 (401)
T ss_dssp TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG--GHHHHHHS--TTGGGGGG
T ss_pred HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH--HHHHhhhc--cchhhhhh
Confidence 78888 9999999984 66666653 34568888988763 24445443 45877543
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-10 Score=128.19 Aligned_cols=76 Identities=12% Similarity=0.291 Sum_probs=61.4
Q ss_pred eEeecCCCCccChhhHHHHHHHc--CCccCCCCCCChHHHHHHHHHHHHhCCCceeeCC-CcccccchhHHHHHHHHHhc
Q 044882 2 YCSLFPKDYEFEEEEIILLWCAV--GLLDHGESGNPSEDLGRKFFRELRARSFIQQSSN-SISRFLMHDLINDLAQWAAG 78 (815)
Q Consensus 2 ycslfPed~~i~~~~Li~~Wiae--G~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mHdlv~d~a~~~~~ 78 (815)
|||+||+||.|+ |+.|+|+ ||+.....+..++++|+ |+++|+++||++.... ...+|+|||+|||+|+++++
T Consensus 395 ~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 395 FAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp GGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred heeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence 999999999999 8999999 99987544677888888 9999999999998753 35689999999999999988
Q ss_pred cceE
Q 044882 79 EIYF 82 (815)
Q Consensus 79 ~~~~ 82 (815)
+++.
T Consensus 470 ~~~~ 473 (549)
T 2a5y_B 470 AQTI 473 (549)
T ss_dssp THHH
T ss_pred HHHH
Confidence 7654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.7e-08 Score=101.06 Aligned_cols=233 Identities=10% Similarity=0.198 Sum_probs=161.0
Q ss_pred cceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccC
Q 044882 515 LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLH 594 (815)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~ 594 (815)
++.+.+.+ .++.++...+ .+ .+|+.+.+... ++.++..+| .+| +|+.+.+.. .+..+....|.
T Consensus 115 l~~i~ip~--~i~~I~~~aF-~~-~~L~~i~l~~~--i~~I~~~aF---------~~~-~L~~i~lp~-~l~~I~~~aF~ 177 (401)
T 4fdw_A 115 YNEIILPN--SVKSIPKDAF-RN-SQIAKVVLNEG--LKSIGDMAF---------FNS-TVQEIVFPS-TLEQLKEDIFY 177 (401)
T ss_dssp CSEEECCT--TCCEECTTTT-TT-CCCSEEECCTT--CCEECTTTT---------TTC-CCCEEECCT-TCCEECSSTTT
T ss_pred ccEEEECC--ccCEehHhhc-cc-CCccEEEeCCC--ccEECHHhc---------CCC-CceEEEeCC-CccEehHHHhh
Confidence 44444433 2444544443 34 36888887654 555554433 333 355555543 44555567899
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCC-CCCCCceE
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDG-LPTNLQSL 673 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L 673 (815)
++++|+.+++.+|. +..++.....+.+|+.+.+.++ +...-...|.++++|+.+++.++ ++.++... .-.+|+.+
T Consensus 178 ~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 178 YCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTV 253 (401)
T ss_dssp TCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEE
T ss_pred CcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEE
Confidence 99999999999885 5666665555799999999865 34444557889999999999875 45554432 12689999
Q ss_pred EEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcc-----cCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 674 TIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMV-----SFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 674 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
.+.++- . .. ....|.++++|+.+++.+ +... .++. .+|..+++|+.+++.+ .++.|+.
T Consensus 254 ~lp~~i--~-~I--~~~aF~~c~~L~~l~l~~--~~~~~~~~~~I~~--------~aF~~c~~L~~l~l~~--~i~~I~~ 316 (401)
T 4fdw_A 254 KLPNGV--T-NI--ASRAFYYCPELAEVTTYG--STFNDDPEAMIHP--------YCLEGCPKLARFEIPE--SIRILGQ 316 (401)
T ss_dssp EEETTC--C-EE--CTTTTTTCTTCCEEEEES--SCCCCCTTCEECT--------TTTTTCTTCCEECCCT--TCCEECT
T ss_pred EeCCCc--c-EE--ChhHhhCCCCCCEEEeCC--ccccCCcccEECH--------HHhhCCccCCeEEeCC--ceEEEhh
Confidence 996542 1 11 126799999999999987 3332 4554 5677889999999985 5888877
Q ss_pred -cCCCCCCCCeeeeCCCCCCcccCCCCCC-CccceeeecCC
Q 044882 749 -SIVDLQNLASLYLGDCPKLKYFPEKGLP-SSLLQLDIWGC 787 (815)
Q Consensus 749 -~~~~l~~L~~L~i~~c~~l~~l~~~~~~-~~L~~L~i~~c 787 (815)
.|.+|++|+.+.|.. +++.++...+. .+|+.+++.++
T Consensus 317 ~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp TTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCS
T ss_pred hhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCC
Confidence 788999999999964 58888764331 38999999886
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.2e-07 Score=93.77 Aligned_cols=190 Identities=12% Similarity=0.105 Sum_probs=107.3
Q ss_pred cccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcC
Q 044882 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQ 648 (815)
Q Consensus 569 l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 648 (815)
+.+|.+|+.+.+..| +..+....+.++..|+.+.+..+. ..+........+|+.+.+.... ...-...+..+.+|+
T Consensus 181 F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 181 FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLE 256 (394)
T ss_dssp TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCC
T ss_pred ccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCCc-eecccccccccccce
Confidence 445666666655443 333334456666666666665442 3333344445667777665432 222233456667777
Q ss_pred cEEecCCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCC
Q 044882 649 ELTIGRGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTAL 726 (815)
Q Consensus 649 ~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 726 (815)
.+.+..+. ..+.. ...+..++.+.......- . ..+.++.+|+.+.+.+ ++..+.. .+|
T Consensus 257 ~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~i~-----~--~~F~~~~~L~~i~l~~---~i~~I~~--------~aF 316 (394)
T 4fs7_A 257 SISIQNNK--LRIGGSLFYNCSGLKKVIYGSVIVP-----E--KTFYGCSSLTEVKLLD---SVKFIGE--------EAF 316 (394)
T ss_dssp EEEECCTT--CEECSCTTTTCTTCCEEEECSSEEC-----T--TTTTTCTTCCEEEECT---TCCEECT--------TTT
T ss_pred eEEcCCCc--ceeeccccccccccceeccCceeec-----c--cccccccccccccccc---ccceech--------hhh
Confidence 77776542 12221 234556666666544211 1 4566777777777754 3555555 345
Q ss_pred CCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCCC--CCccceeeecC
Q 044882 727 PLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKGL--PSSLLQLDIWG 786 (815)
Q Consensus 727 ~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~L~i~~ 786 (815)
..+++|+.+++.. .++.|.. .|.+|++|+.+++.. +++.++...+ .++|+.+++..
T Consensus 317 ~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 317 ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 6667777777754 4666655 667777888877754 3666665443 35677777643
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-06 Score=92.54 Aligned_cols=64 Identities=9% Similarity=0.174 Sum_probs=36.2
Q ss_pred ccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeecc
Q 044882 165 IFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNS 231 (815)
Q Consensus 165 i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 231 (815)
++.+. .+|.++.+|+.+.+.. .++.++ .++.++.+|+.+++..+ +..++ ..+.++++|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhccc
Confidence 44453 4566667777777753 366554 45666677777766543 33343 235555666655443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-08 Score=104.25 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=58.3
Q ss_pred ccccccCCCcccEEEcCC-CCccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccchhhcC
Q 044882 145 ILPKLFKLQRLRAFSLRG-YHIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGN 221 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 221 (815)
+|. +..+++|++|+|++ |.++.+| ..|+.|.+|++|+|++|.|+.+| ..|++|++|++|+|++| .+..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence 555 66667777777775 7777665 45677777777777777777654 45677777777777777 56666655433
Q ss_pred cCCcceeeccCCC
Q 044882 222 LAKLHHLKNSNTK 234 (815)
Q Consensus 222 L~~L~~L~l~~~~ 234 (815)
...|+.|++.+|.
T Consensus 102 ~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLSGNP 114 (347)
T ss_dssp SCCCCEEECCSSC
T ss_pred cCCceEEEeeCCC
Confidence 3337777777665
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-08 Score=102.93 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=80.9
Q ss_pred EEEcCCC-CccccCccccCCccCCEEecCC-CCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccC
Q 044882 157 AFSLRGY-HIFELPDSIGDLRYLRYLNLSG-TEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSN 232 (815)
Q Consensus 157 ~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 232 (815)
.++++++ +++.+|. +..+.+|++|+|++ |.|..+| ..|++|++|++|+|++| .+..+| ..|++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 8999999 99999999999996 9999887 67999999999999999 666665 4679999999999999
Q ss_pred CCcccccccccccccccccccce
Q 044882 233 TKSLEEMPVGIGRLTSLQTLCNF 255 (815)
Q Consensus 233 ~~~l~~~p~~i~~L~~L~~L~~~ 255 (815)
|. +..+|..+.....|+.|+..
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECC
T ss_pred Cc-cceeCHHHcccCCceEEEee
Confidence 98 88888774443348877543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.9e-09 Score=108.41 Aligned_cols=36 Identities=17% Similarity=-0.012 Sum_probs=19.9
Q ss_pred CCCccceEEecCCCCCcc-----ccccCCCCCCCCeeeeCCC
Q 044882 728 LPASLTSLWISGFPNLER-----LSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 728 ~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~i~~c 764 (815)
.+++|+.|+|++| .++. +...+...++|++|++++|
T Consensus 209 ~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 209 RNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3456666666663 3332 2233445566777777764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.2e-09 Score=108.76 Aligned_cols=68 Identities=15% Similarity=0.004 Sum_probs=32.0
Q ss_pred CCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 667 PTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 667 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
.++|++|++++|.............+...++|++|++++ +.+..... ..+...+...++|++|+|++|
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~--N~i~~~g~----~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY--NGAGDTAA----LALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS--SCCCHHHH----HHHHHHHHHCSSCCEEECTTS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC--CCCCHHHH----HHHHHHHHhCCCCCEEeccCC
Confidence 345666666665533322111113445556677777766 23322111 111112223467778888774
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.1e-06 Score=86.50 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=28.5
Q ss_pred cCCCCCCceEEeccCCCc---------ccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCC
Q 044882 593 LHNLRQLQEISIRRCGNL---------VSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRG 655 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 655 (815)
...+++|+.|.+...... ..+...+..+|+|++|.|++|... .++. + .+++|+.|++..|
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISG 203 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECS
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecC
Confidence 345677777777543210 011111233456666666665221 1222 2 2556666666555
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00024 Score=75.02 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=43.2
Q ss_pred cccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEecccccccccccccCCCCCc
Q 044882 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISSCKRLEALPKGLHNLTSL 647 (815)
Q Consensus 569 l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 647 (815)
+.+|..|+.+.+..+ ...+....|.++++|+.+.+... +..++. +|..|.+|+.+.|..+ +...-...|.++.+|
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 344555554444222 11222334445555555555321 222322 4444555555555432 111122344555555
Q ss_pred CcEEecCCCCCCCCCCC--CCCCCCceEEEcCC
Q 044882 648 QELTIGRGVELPSLKED--GLPTNLQSLTIEGN 678 (815)
Q Consensus 648 ~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~ 678 (815)
+.+.+..+ ++.+... ..+.+|+.+++.++
T Consensus 337 ~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 55555432 3333221 23444555555444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.2e-06 Score=77.03 Aligned_cols=82 Identities=10% Similarity=0.093 Sum_probs=43.8
Q ss_pred CCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC--CCC----CCCCceEEEcCCcchhhhhhhcCcCccc
Q 044882 621 AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE--DGL----PTNLQSLTIEGNMEIWKSMIERGRGFHR 694 (815)
Q Consensus 621 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 694 (815)
..|++|++++|.+...--..+.++++|++|+|++|..+++-.- ... .++|++|++++|..+++.... .+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHhc
Confidence 4677777777775544334456777777777777766654210 011 234666666666544432221 2334
Q ss_pred CCCccEEEEec
Q 044882 695 FSSLRQLTIIN 705 (815)
Q Consensus 695 l~~L~~L~l~~ 705 (815)
+++|++|++++
T Consensus 138 ~~~L~~L~L~~ 148 (176)
T 3e4g_A 138 FRNLKYLFLSD 148 (176)
T ss_dssp CTTCCEEEEES
T ss_pred CCCCCEEECCC
Confidence 44455555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-06 Score=83.88 Aligned_cols=104 Identities=21% Similarity=0.137 Sum_probs=65.0
Q ss_pred cCCCcccE--EEcCCCCccccCccc----cCCccCCEEecCCCCCCcc---chhhhccCCCcEEeccCCccccccchhhc
Q 044882 150 FKLQRLRA--FSLRGYHIFELPDSI----GDLRYLRYLNLSGTEIRTL---PESVNKLYNLHSLLLEDCDRLKKLCADMG 220 (815)
Q Consensus 150 ~~l~~Lr~--L~L~~~~i~~lp~~~----~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 220 (815)
...+.|+. ++++.|....++..+ .++++|++|+|++|.|..+ |..++.+++|++|+|++| .+..+. .+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhh
Confidence 33344544 555666544433222 4567888888888887754 356678888888888887 565552 345
Q ss_pred CcC--CcceeeccCCCccccccc-------ccccccccccccce
Q 044882 221 NLA--KLHHLKNSNTKSLEEMPV-------GIGRLTSLQTLCNF 255 (815)
Q Consensus 221 ~L~--~L~~L~l~~~~~l~~~p~-------~i~~L~~L~~L~~~ 255 (815)
.++ +|++|++++|.....+|. .+..+++|+.|+..
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 555 788888888874444442 25667777777543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-06 Score=87.73 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=41.5
Q ss_pred ccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccccc--CCCCCcCcEEecC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGL--HNLTSLQELTIGR 654 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~ 654 (815)
.+..+|+|+.|.|++|... .++. + .+++|+.|+|..|.+.......+ ..+|+|+.|+|+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 4456789999999887433 2333 3 37899999999887644332333 3689999999864
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00068 Score=71.52 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=66.9
Q ss_pred cccccccccccccccccccCcccccCCCCCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccccccCCCCCc
Q 044882 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSL 647 (815)
Q Consensus 569 l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 647 (815)
+.+|.+|+.+.+. +.+..+....|.++.+|+.+.|..+ ++.+. .+|..|.+|+.+.|..+ ....-...|.++++|
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 5577788777764 4455555667888999999999754 45454 47888999999999764 333334578899999
Q ss_pred CcEEecCCCCCCCCCCCCCCCCCceEEEcCC
Q 044882 648 QELTIGRGVELPSLKEDGLPTNLQSLTIEGN 678 (815)
Q Consensus 648 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 678 (815)
+.+++.++... ........+|+.+.+..+
T Consensus 360 ~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 360 NNIEYSGSRSQ--WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEEESSCHHH--HHTCBCCCCC--------
T ss_pred CEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence 99999986321 122334556666666543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.93 E-value=9.9e-06 Score=72.79 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=48.3
Q ss_pred cccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhcccccc------ccceEecccccccccccccccccc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPL------SLKNLLIHKCDNIRTLTVEEGIQS 586 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~------~L~~l~l~~~~~L~~l~ls~n~~~ 586 (815)
..|++|++++|. ++......+ ..+++|++|++++|..+++.....+.. +|+.|++++|++++.-.+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------ 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI------ 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH------
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH------
Confidence 368888888887 443332222 678899999999998777655443321 344455554444433222
Q ss_pred cCcccccCCCCCCceEEeccCCC
Q 044882 587 SSSRSGLHNLRQLQEISIRRCGN 609 (815)
Q Consensus 587 ~~~~~~~~~l~~L~~L~l~~~~~ 609 (815)
..+..+++|++|++++|+.
T Consensus 133 ----~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 133 ----IALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp ----HHGGGCTTCCEEEEESCTT
T ss_pred ----HHHhcCCCCCEEECCCCCC
Confidence 1233445555555555543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.92 E-value=8.9e-06 Score=79.27 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=65.2
Q ss_pred cCCCcccEEEcCCCCcccc---CccccCCccCCEEecCCCCCCccchhhhccC--CCcEEeccCCccccccc-------h
Q 044882 150 FKLQRLRAFSLRGYHIFEL---PDSIGDLRYLRYLNLSGTEIRTLPESVNKLY--NLHSLLLEDCDRLKKLC-------A 217 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp-------~ 217 (815)
..+++|++|+|++|+|+.+ |..++.+++|++|+|++|.|..+ ..+..+. +|++|+|++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5688999999999999865 46678999999999999999987 4466666 99999999995444444 2
Q ss_pred hhcCcCCcceeec
Q 044882 218 DMGNLAKLHHLKN 230 (815)
Q Consensus 218 ~i~~L~~L~~L~l 230 (815)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3678999999974
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.2e-06 Score=94.31 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=54.0
Q ss_pred CeEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeCCCcccccchhHHHHHHH
Q 044882 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSISRFLMHDLINDLAQ 74 (815)
Q Consensus 1 ~ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~mHdlv~d~a~ 74 (815)
.|||+||+|+.|+++.+++.|+++| ++.|+.++++|+++||++... ...+|+|||++++++.
T Consensus 376 L~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 376 DRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 3899999999999999999999998 135889999999999999853 4578999999999763
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0039 Score=65.29 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=38.3
Q ss_pred CcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcc
Q 044882 691 GFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKY 769 (815)
Q Consensus 691 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~ 769 (815)
.|.++++|+.+.+.+ +.++.++. .+|..+++|+.+++.. .++.|.. .|.+|++|+.+.|.. +++.
T Consensus 281 aF~~c~~L~~i~l~~--~~i~~I~~--------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~ 346 (379)
T 4h09_A 281 LCSGCSNLTKVVMDN--SAIETLEP--------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITL 346 (379)
T ss_dssp TTTTCTTCCEEEECC--TTCCEECT--------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCE
T ss_pred ccccccccccccccc--cccceehh--------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCE
Confidence 455666666666654 44555554 3445556666666653 3555554 566666666666642 3444
Q ss_pred cCC
Q 044882 770 FPE 772 (815)
Q Consensus 770 l~~ 772 (815)
+..
T Consensus 347 I~~ 349 (379)
T 4h09_A 347 IES 349 (379)
T ss_dssp ECT
T ss_pred Ech
Confidence 443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-05 Score=74.08 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=48.6
Q ss_pred ccCCCcccEEEcCCCCccc-----cCccccCCccCCEEecCCCCCCc-----cchhhhccCCCcEEec--cCCccccc--
Q 044882 149 LFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLL--EDCDRLKK-- 214 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L--~~~~~l~~-- 214 (815)
+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|.. +...+...++|++|+| ++| .+..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g 139 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV 139 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence 3455666777777666652 23444455666777777766653 3455555566777777 555 3321
Q ss_pred ---cchhhcCcCCcceeeccCCC
Q 044882 215 ---LCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 215 ---lp~~i~~L~~L~~L~l~~~~ 234 (815)
+...+...++|++|++++|.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCcCEEeccCCC
Confidence 33334445666677666665
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.2e-05 Score=74.58 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=78.8
Q ss_pred ccccCCCcccEEEcCCC-Ccc-----ccCccccCCccCCEEecCCCCCCc-----cchhhhccCCCcEEeccCCccccc-
Q 044882 147 PKLFKLQRLRAFSLRGY-HIF-----ELPDSIGDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLLEDCDRLKK- 214 (815)
Q Consensus 147 ~~~~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~- 214 (815)
..+...+.|++|+|++| .+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++| .+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 34467889999999999 876 345667778999999999999973 4566677789999999999 5543
Q ss_pred ----cchhhcCcCCcceeec--cCCCcccc-----ccccccccccccccc
Q 044882 215 ----LCADMGNLAKLHHLKN--SNTKSLEE-----MPVGIGRLTSLQTLC 253 (815)
Q Consensus 215 ----lp~~i~~L~~L~~L~l--~~~~~l~~-----~p~~i~~L~~L~~L~ 253 (815)
+...+...+.|++|++ ++|. ++. +...+...++|++|+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEe
Confidence 5666778889999999 7787 443 223344556677664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.7e-05 Score=98.09 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=58.2
Q ss_pred CeEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeCC-CcccccchhHHHHHHHHHhcc
Q 044882 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSN-SISRFLMHDLINDLAQWAAGE 79 (815)
Q Consensus 1 ~ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mHdlv~d~a~~~~~~ 79 (815)
.|||+||+|+.|+++.+++.|.++ ++.++.++++|++++|++.... ...+|+|||+||++|+..+.+
T Consensus 384 ~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 384 TDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 389999999999999999999654 3678999999999999997653 234699999999999998766
Q ss_pred c
Q 044882 80 I 80 (815)
Q Consensus 80 ~ 80 (815)
+
T Consensus 452 ~ 452 (1249)
T 3sfz_A 452 Q 452 (1249)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00075 Score=70.85 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=75.2
Q ss_pred ccCCCCCCceEEeccCCCcccc-cCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC--CCCC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSF-PEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED--GLPT 668 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 668 (815)
.+..+..|+.+.+..+ ...+ ..++..+..|+.+.+..+ ....-...+.++.+|+.+.+..+ ++.++.. ..+.
T Consensus 212 ~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~ 286 (379)
T 4h09_A 212 GFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCT
T ss_pred ccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccc
Confidence 3444555555555433 2222 234555666666666553 22222334556666666666543 3333322 3556
Q ss_pred CCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 669 NLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 669 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
+|+.+.+.++.... . ....|.++.+|+.+.+.. +++.+.. .+|..+++|+.+.+.. .++.|..
T Consensus 287 ~L~~i~l~~~~i~~--I--~~~aF~~c~~L~~i~lp~---~l~~I~~--------~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 287 NLTKVVMDNSAIET--L--EPRVFMDCVKLSSVTLPT---ALKTIQV--------YAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp TCCEEEECCTTCCE--E--CTTTTTTCTTCCEEECCT---TCCEECT--------TTTTTCTTCCCCCCCT--TCCEECT
T ss_pred ccccccccccccce--e--hhhhhcCCCCCCEEEcCc---cccEEHH--------HHhhCCCCCCEEEECC--ccCEEch
Confidence 67777666543211 1 115677888888888864 3666665 4566677888877754 3666654
Q ss_pred -cCCC
Q 044882 749 -SIVD 752 (815)
Q Consensus 749 -~~~~ 752 (815)
.|.+
T Consensus 350 ~aF~~ 354 (379)
T 4h09_A 350 GAFEG 354 (379)
T ss_dssp TTTTT
T ss_pred hHhhC
Confidence 3443
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00048 Score=77.19 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=53.6
Q ss_pred eEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeCC-CcccccchhHHHHHHHHHh
Q 044882 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSN-SISRFLMHDLINDLAQWAA 77 (815)
Q Consensus 2 ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mHdlv~d~a~~~~ 77 (815)
|||+||+|+.|+++.++..|.++ .+.+..++++|++++|++.... ...+|+|||++|+++....
T Consensus 385 ~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 385 DLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 79999999999999999999543 2457899999999999986542 3457999999999998773
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0038 Score=53.32 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=41.3
Q ss_pred cEEEcCCCCcc--ccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCC
Q 044882 156 RAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDC 209 (815)
Q Consensus 156 r~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 209 (815)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+| ..+..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 47788888888 8887653 46888999999998887 45678888888888887
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.056 Score=49.41 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=50.4
Q ss_pred cCCCcccEEEcCCC-Ccc-----ccCccccCCccCCEEecCCCCCC-----ccchhhhccCCCcEEeccCCcccc-----
Q 044882 150 FKLQRLRAFSLRGY-HIF-----ELPDSIGDLRYLRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCDRLK----- 213 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~----- 213 (815)
..-+.|+.|+|+++ .|. .+-+++..-..|+.|+|++|.|. .+-..+..-+.|++|+|++| .+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 34456777777764 554 23345555677788888877776 23345555567788888777 433
Q ss_pred ccchhhcCcCCcceeeccCC
Q 044882 214 KLCADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 214 ~lp~~i~~L~~L~~L~l~~~ 233 (815)
.+-..+..=+.|++|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 22233444456777777654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.063 Score=45.65 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=32.1
Q ss_pred eEEeccCCCcc--cccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCC
Q 044882 601 EISIRRCGNLV--SFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGV 656 (815)
Q Consensus 601 ~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 656 (815)
.++.+++. ++ .+|..+. ++|++|+|++|.+...-+..|..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 44444443 33 5555433 367777777777655545556677777777777774
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.11 Score=47.46 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=72.1
Q ss_pred cCCCceEEccccCCcCcCCCccc----cccccccCCCcccEEEcCCCCcc-----ccCccccCCccCCEEecCCCCCCc-
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAY----SILPKLFKLQRLRAFSLRGYHIF-----ELPDSIGDLRYLRYLNLSGTEIRT- 190 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~- 190 (815)
+-+.|+.|.+..+. .+.. .+...+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|.|..
T Consensus 39 ~n~~L~~L~L~~nn-----~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMK-----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TCSSCCEEECTTCC-----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred cCCCccEEECCCCC-----CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 45567777665431 1221 23344566678999999999987 234555566889999999999982
Q ss_pred ----cchhhhccCCCcEEeccCCcc--cc-----ccchhhcCcCCcceeeccCCC
Q 044882 191 ----LPESVNKLYNLHSLLLEDCDR--LK-----KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 191 ----lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~~ 234 (815)
+-..+..-+.|++|+|+++.. +. .+-..+..=+.|+.|+++.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 334455556799999986521 22 233345555789999988765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 815 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.002 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.003 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 14/232 (6%)
Query: 168 LPDSIGDL--RYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCD-RLKKLCADMGNLAK 224
PD G L + + + + + + + L + + L + +K
Sbjct: 13 HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 72
Query: 225 LHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLE 284
L +L + + + + + ++L L S L+ L LN+S
Sbjct: 73 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132
Query: 285 NVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCIS 344
+ + + + L + + S +++ NL +S
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---------TLVRRCPNLVHLDLS 183
Query: 345 GYGGTKFPTWFGDSSFSNLVTLEFENCDMCT--ALPSVGQLPSLKHLAVCGM 394
K + + L L C L +G++P+LK L V G+
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.002
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 137 SRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEI--RTLPES 194
+ +L + +L + AF + + +++++LS + I TL
Sbjct: 8 TGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66
Query: 195 VNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMP 240
+++ L +L LE + + + L L S E
Sbjct: 67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 0.001
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 2/118 (1%)
Query: 133 LSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP 192
L N+ + L L L + + I P + L L L LS +++ LP
Sbjct: 38 LQNNKITEIKDGDFKNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKNQLKELP 95
Query: 193 ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQ 250
E + K + + +++K + N + L + KS + L
Sbjct: 96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.002
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKL 215
R L + L + L + +L+LS +R LP ++ L L L D
Sbjct: 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 216 CADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
+ L N+ + + L L
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLL 95
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.003
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLL 205
+ R R LRGY I + + L ++ S EIR L L L +LL
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLL 69
Query: 206 LEDC 209
+ +
Sbjct: 70 VNNN 73
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 815 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.87 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.83 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.78 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.76 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.75 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.73 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.71 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.66 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.62 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.61 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.58 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.58 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.5 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.44 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.43 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.4 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.39 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.38 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.38 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.36 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.33 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.29 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.15 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.1 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.1 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.09 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.02 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.9 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.84 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.77 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.51 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.36 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.0 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.8 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.5 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.26 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.38 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 94.77 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.87 E-value=5.7e-21 Score=201.89 Aligned_cols=86 Identities=17% Similarity=0.349 Sum_probs=72.6
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+.+|++|+++++.|+.+ +.++.+++|++|++++|+|+.+|. ++++++|++|++++| .+..++. ++++++|+.|+
T Consensus 41 ~~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L~~L~ 116 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 116 (384)
T ss_dssp HHHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred HHhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-ccccccc-ccccccccccc
Confidence 3567799999999999888 468889999999999999999874 899999999999999 6777765 88999999999
Q ss_pred ccCCCcccccc
Q 044882 230 NSNTKSLEEMP 240 (815)
Q Consensus 230 l~~~~~l~~~p 240 (815)
++++. ...++
T Consensus 117 ~~~~~-~~~~~ 126 (384)
T d2omza2 117 LFNNQ-ITDID 126 (384)
T ss_dssp CCSSC-CCCCG
T ss_pred ccccc-ccccc
Confidence 98887 44443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.83 E-value=4.8e-20 Score=194.71 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=81.2
Q ss_pred ccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccC
Q 044882 120 YDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLY 199 (815)
Q Consensus 120 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~ 199 (815)
.++.++++|.+.+.. + ...+.+..+++|++|+|++|+|+.+|. ++++++|++|++++|.+..++. +++++
T Consensus 41 ~~l~~l~~L~l~~~~------I--~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~ 110 (384)
T d2omza2 41 TDLDQVTTLQADRLG------I--KSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLT 110 (384)
T ss_dssp HHHTTCCEEECCSSC------C--CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred HHhCCCCEEECCCCC------C--CCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-ccccc
Confidence 356778888876654 2 223567789999999999999999974 9999999999999999998864 89999
Q ss_pred CCcEEeccCCccccccchhhcCcCCcceeeccCCC
Q 044882 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 234 (815)
+|++|+++++ ....++. ......+..+....+.
T Consensus 111 ~L~~L~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 143 (384)
T d2omza2 111 NLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT 143 (384)
T ss_dssp TCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE
T ss_pred cccccccccc-ccccccc-cccccccccccccccc
Confidence 9999999988 6666654 4455666666665554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=4.7e-18 Score=172.37 Aligned_cols=85 Identities=25% Similarity=0.409 Sum_probs=71.7
Q ss_pred cccEEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCcccccc-chhhcCcCCcceeecc
Q 044882 154 RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNS 231 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 231 (815)
..++++.++.+++++|..+. +++++|+|++|+|+.+|. +|.++++|++|++++| .+..+ |..|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEeccc
Confidence 56888999999999998774 689999999999999985 6899999999999999 45555 6678999999999999
Q ss_pred CCCcccccccc
Q 044882 232 NTKSLEEMPVG 242 (815)
Q Consensus 232 ~~~~l~~~p~~ 242 (815)
+|. ++.+|..
T Consensus 88 ~n~-l~~l~~~ 97 (305)
T d1xkua_ 88 KNQ-LKELPEK 97 (305)
T ss_dssp SSC-CSBCCSS
T ss_pred CCc-cCcCccc
Confidence 997 6666644
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.76 E-value=7.2e-19 Score=179.15 Aligned_cols=250 Identities=14% Similarity=0.116 Sum_probs=191.6
Q ss_pred cccceEEEeccCCcc--cCchhhhcCCCCCcceEEEeccCCch-hhhccccccccceEecccccccccccccccccccCc
Q 044882 513 SVLKKIEIRECDALK--SLPEAWMCGTNSSLEDMSIRQCHSLT-YIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS 589 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~ 589 (815)
..++.|+++++...+ .+|..+ ..+++|++|++++|..+. .+|. . +.++++|++|++++|.+.+..
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l--~~L~~L~~L~Ls~~N~l~g~iP~-----~-----i~~L~~L~~L~Ls~N~l~~~~ 117 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPP-----A-----IAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCG-----G-----GGGCTTCSEEEEEEECCEEEC
T ss_pred EEEEEEECCCCCCCCCCCCChHH--hcCcccccccccccccccccccc-----c-----cccccccchhhhccccccccc
Confidence 468899999886554 466666 789999999999865543 3332 2 567789999999999999988
Q ss_pred ccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCc-CcEEecCCCCCCCCCCCCCCC
Q 044882 590 RSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSL-QELTIGRGVELPSLKEDGLPT 668 (815)
Q Consensus 590 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~ 668 (815)
+..+..++.|+.+++++|.....+|..+..+++|+++++++|.+.+.+|..+..+.++ +.+++++|......+......
T Consensus 118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l 197 (313)
T d1ogqa_ 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence 8889999999999999998888888889999999999999999988999888888776 778888885433333222223
Q ss_pred CCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 669 NLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 669 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
....+++.++....... ..+..+++++.+++.+ +.+...+. .+..+++|+.|++++|.....+|.
T Consensus 198 ~~~~l~l~~~~~~~~~~----~~~~~~~~l~~l~~~~--~~l~~~~~---------~~~~~~~L~~L~Ls~N~l~g~iP~ 262 (313)
T d1ogqa_ 198 NLAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAK--NSLAFDLG---------KVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp CCSEEECCSSEEEECCG----GGCCTTSCCSEEECCS--SEECCBGG---------GCCCCTTCCEEECCSSCCEECCCG
T ss_pred ccccccccccccccccc----cccccccccccccccc--cccccccc---------ccccccccccccCccCeecccCCh
Confidence 45568888776544222 4567789999999988 33332222 235678999999999544448999
Q ss_pred cCCCCCCCCeeeeCCCCCCc-ccCCCCCCCccceeeecCCcch
Q 044882 749 SIVDLQNLASLYLGDCPKLK-YFPEKGLPSSLLQLDIWGCPLI 790 (815)
Q Consensus 749 ~~~~l~~L~~L~i~~c~~l~-~l~~~~~~~~L~~L~i~~c~~l 790 (815)
.+.++++|++|+++++ +++ .+|..+.+++|+.+++++++.+
T Consensus 263 ~l~~L~~L~~L~Ls~N-~l~g~iP~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 263 GLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred HHhCCCCCCEEECcCC-cccccCCCcccCCCCCHHHhCCCccc
Confidence 9999999999999995 666 7887666789999999998754
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.75 E-value=4.4e-19 Score=180.78 Aligned_cols=251 Identities=16% Similarity=0.192 Sum_probs=163.3
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCC-CCcc-ccCccccCCccCCEEecCCCCCCcc-chhhhccC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRG-YHIF-ELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLY 199 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~ 199 (815)
.+++.|.+.++... -...+|+.+.++++|++|+|++ |.+. .+|.+|++|++|++|+|++|++..+ |..+..+.
T Consensus 50 ~~v~~L~L~~~~l~----g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~ 125 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLP----KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCS----SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred EEEEEEECCCCCCC----CCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh
Confidence 35666666554310 1124677888899999999986 6676 7888899999999999999988855 46678888
Q ss_pred CCcEEeccCCccccccchhhcCcCCcceeeccCCCccccccccccccccc-ccccceeeccCCCCCccccccccccccce
Q 044882 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSL-QTLCNFVVGKGSGSGLRELKLLTHLHGTL 278 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L-~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 278 (815)
+|+++++++|.....+|..++++++|+++++++|...+.+|..+..+.++ +.+...... ..+.....+..+..+. +
T Consensus 126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~-l~~~~~~~~~~l~~~~--l 202 (313)
T d1ogqa_ 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAF--V 202 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSE--E
T ss_pred hhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc-cccccccccccccccc--c
Confidence 99999999887777888889999999999999888666788887777766 333211100 0001111222222111 1
Q ss_pred eeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCC-CCCccCCC
Q 044882 279 NISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGT-KFPTWFGD 357 (815)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~ 357 (815)
.... ..........+.....++.+++..+... ..+..+...++|+.|++++|.++ .+|.++.
T Consensus 203 ~l~~----~~~~~~~~~~~~~~~~l~~l~~~~~~l~------------~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~- 265 (313)
T d1ogqa_ 203 DLSR----NMLEGDASVLFGSDKNTQKIHLAKNSLA------------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT- 265 (313)
T ss_dssp ECCS----SEEEECCGGGCCTTSCCSEEECCSSEEC------------CBGGGCCCCTTCCEEECCSSCCEECCCGGGG-
T ss_pred cccc----cccccccccccccccccccccccccccc------------ccccccccccccccccCccCeecccCChHHh-
Confidence 1000 0011112233555667777777665541 12334556677888888877776 6777776
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCce
Q 044882 358 SSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVK 398 (815)
Q Consensus 358 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 398 (815)
.+++|++|+|++|.+.+.+|.++.+.+|+.+++.+|+.+.
T Consensus 266 -~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 266 -QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred -CCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCcccc
Confidence 4778888888888777777777777788888777775443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.73 E-value=5.7e-17 Score=164.24 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=147.1
Q ss_pred eecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeec
Q 044882 344 SGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFE 422 (815)
Q Consensus 344 ~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 422 (815)
++...+++|..+ .+++++|++++|.+....+ .+..+++|++|++++|... .+...
T Consensus 18 ~~~~L~~lP~~l----~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~------------------- 73 (305)
T d1xkua_ 18 SDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPG------------------- 73 (305)
T ss_dssp TTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTT-------------------
T ss_pred cCCCCCccCCCC----CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchh-------------------
Confidence 334556677654 3567888888887655444 5777788888888776422 22211
Q ss_pred cccccccccccCCCCCcccCCCcceeeeccCcccccCCC-CCCCCccEEEEecccCcccc---CCCCCCcceEEeCCCCc
Q 044882 423 DMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP-EHLPALEMLVIEGCEELLVS---VTSLPALCKFISGGCKK 498 (815)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~~l~~~---~~~~~~L~~L~l~~~~~ 498 (815)
.+..+++|+.|++++ ++++ .+| ...+.++.|...++...... +...
T Consensus 74 ---------------~f~~l~~L~~L~l~~-n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~------------- 123 (305)
T d1xkua_ 74 ---------------AFAPLVKLERLYLSK-NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGL------------- 123 (305)
T ss_dssp ---------------TTTTCTTCCEEECCS-SCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTC-------------
T ss_pred ---------------hhhCCCccCEecccC-CccC-cCccchhhhhhhhhccccchhhhhhhhhhcc-------------
Confidence 122456666666666 3555 444 33445555555444221100 0111
Q ss_pred cccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccc
Q 044882 499 VVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTL 578 (815)
Q Consensus 499 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l 578 (815)
..+..+....+..............+++|+.+++.+|. +..++ ...+++|+.+
T Consensus 124 --------------~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~------------~~~~~~L~~L 176 (305)
T d1xkua_ 124 --------------NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP------------QGLPPSLTEL 176 (305)
T ss_dssp --------------TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC------------SSCCTTCSEE
T ss_pred --------------ccccccccccccccccCCCccccccccccCccccccCC-ccccC------------cccCCccCEE
Confidence 12223333333221111111111556777777777763 22222 1223456666
Q ss_pred cccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCC
Q 044882 579 TVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVEL 658 (815)
Q Consensus 579 ~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 658 (815)
++++|...+..+..+.+++.+++|++++|......+..+..+++|++|++++|.+ ..+|.++..+++|++|++++| .+
T Consensus 177 ~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l~~L~~L~Ls~N-~i 254 (305)
T d1xkua_ 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNN-NI 254 (305)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSS-CC
T ss_pred ECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc-cccccccccccCCCEEECCCC-cc
Confidence 6666666666667778888888888888876555566677788888888888875 456777888888888888888 56
Q ss_pred CCCCCC--------CCCCCCceEEEcCCc
Q 044882 659 PSLKED--------GLPTNLQSLTIEGNM 679 (815)
Q Consensus 659 ~~~~~~--------~~~~~L~~L~l~~~~ 679 (815)
+.++.. ...++|+.|++++|+
T Consensus 255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CccChhhccCcchhcccCCCCEEECCCCc
Confidence 655432 234566777777765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.71 E-value=1.1e-15 Score=158.61 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=47.4
Q ss_pred CCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEE
Q 044882 596 LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTI 675 (815)
Q Consensus 596 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 675 (815)
+++|++|++++|. +..+|.. +++|+.|++++|.+. .+|.. +++|++|++++|+ ++.+|. .+.+|+.|.+
T Consensus 283 ~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~-L~~lp~--~~~~L~~L~~ 351 (353)
T d1jl5a_ 283 PPSLEELNVSNNK-LIELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP-LREFPD--IPESVEDLRM 351 (353)
T ss_dssp CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC-CSSCCC--CCTTCCEEEC
T ss_pred CCCCCEEECCCCc-cCccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc-CCCCCc--cccccCeeEC
Confidence 5678888888885 4456643 467888888888754 55542 4578888888884 666664 3556776665
Q ss_pred c
Q 044882 676 E 676 (815)
Q Consensus 676 ~ 676 (815)
.
T Consensus 352 ~ 352 (353)
T d1jl5a_ 352 N 352 (353)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3e-16 Score=154.84 Aligned_cols=93 Identities=24% Similarity=0.273 Sum_probs=49.5
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 233 (815)
+...+.++++++.+|..+. ++|++|+|++|.|+.+| .++.++++|++|+|++| .+..+|. ++.+++|++|++++|
T Consensus 12 ~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N 87 (266)
T d1p9ag_ 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN 87 (266)
T ss_dssp CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS
T ss_pred CeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccccc
Confidence 3334555555555555443 35555555555555554 34555555555555555 4555543 455555555555555
Q ss_pred Ccccccccccccccccccc
Q 044882 234 KSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 234 ~~l~~~p~~i~~L~~L~~L 252 (815)
. +...|..+..+++|+.|
T Consensus 88 ~-l~~~~~~~~~l~~L~~L 105 (266)
T d1p9ag_ 88 Q-LQSLPLLGQTLPALTVL 105 (266)
T ss_dssp C-CSSCCCCTTTCTTCCEE
T ss_pred c-ccccccccccccccccc
Confidence 4 44444445555555544
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.1e-15 Score=146.55 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=112.5
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEe
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 652 (815)
++++.|++++|.+.+..+..|.++++|++|+|++|. ++.++. +..+++|++|++++|++. ..+..+..+++|+.|++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l 107 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (266)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc-cccccccccccccccccc-ccccccccccccccccc
Confidence 356677777777777777778888888888888885 445553 456778888888888754 34556777888888888
Q ss_pred cCCCCCCCCCC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCc
Q 044882 653 GRGVELPSLKE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPAS 731 (815)
Q Consensus 653 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 731 (815)
++|......+. ...+.++++|++++|....... ..+..+++|+.+++++ +++..++. ..+..+++
T Consensus 108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~----~~~~~l~~l~~l~l~~--N~l~~~~~--------~~~~~l~~ 173 (266)
T d1p9ag_ 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLAN--NNLTELPA--------GLLNGLEN 173 (266)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTT--SCCSCCCT--------TTTTTCTT
T ss_pred cccccceeeccccccccccccccccccccceecc----ccccccccchhccccc--ccccccCc--------cccccccc
Confidence 88743332222 1455677777777765432111 3455666777777766 55555554 23455666
Q ss_pred cceEEecCCCCCccccccCCCCCCCCeeeeCCC
Q 044882 732 LTSLWISGFPNLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 732 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
|++|+|++ +.++.+|.++..+++|+.|+++++
T Consensus 174 L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 174 LDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cceeeccc-CCCcccChhHCCCCCCCEEEecCC
Confidence 77777776 456666666666666777776654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.61 E-value=1.5e-13 Score=142.22 Aligned_cols=153 Identities=27% Similarity=0.344 Sum_probs=95.8
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCce
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQS 672 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 672 (815)
+..++.|+.+++++|.. ..++. ...++..+.+.++.+... + ...+++...++..+. ...+.. .......
T Consensus 200 ~~~l~~L~~l~l~~n~~-~~~~~---~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~-~~~l~~--l~~~~~~ 268 (353)
T d1jl5a_ 200 LQNLPFLTTIYADNNLL-KTLPD---LPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENI-FSGLSE--LPPNLYY 268 (353)
T ss_dssp CTTCTTCCEEECCSSCC-SSCCS---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSC-CSEESC--CCTTCCE
T ss_pred ccccccccccccccccc-ccccc---cccccccccccccccccc-c---ccccccccccccccc-cccccc--ccchhcc
Confidence 44577788888887753 33332 234677777777764332 2 123455555555542 222211 2234445
Q ss_pred EEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCC
Q 044882 673 LTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVD 752 (815)
Q Consensus 673 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 752 (815)
.++..+... .....+++|++|++++ +.+..+|. .+++|+.|++++ +.++.+|..
T Consensus 269 ~~~~~~~~~--------~~~~~~~~L~~L~Ls~--N~l~~lp~------------~~~~L~~L~L~~-N~L~~l~~~--- 322 (353)
T d1jl5a_ 269 LNASSNEIR--------SLCDLPPSLEELNVSN--NKLIELPA------------LPPRLERLIASF-NHLAEVPEL--- 322 (353)
T ss_dssp EECCSSCCS--------EECCCCTTCCEEECCS--SCCSCCCC------------CCTTCCEEECCS-SCCSCCCCC---
T ss_pred cccccCccc--------cccccCCCCCEEECCC--CccCcccc------------ccCCCCEEECCC-CcCCccccc---
Confidence 555554321 1234467889999988 56777775 467899999988 568888853
Q ss_pred CCCCCeeeeCCCCCCcccCCCCCCCccceeeec
Q 044882 753 LQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIW 785 (815)
Q Consensus 753 l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~ 785 (815)
+++|++|++++|+ ++++|. ++.+|+.|.+.
T Consensus 323 ~~~L~~L~L~~N~-L~~lp~--~~~~L~~L~~~ 352 (353)
T d1jl5a_ 323 PQNLKQLHVEYNP-LREFPD--IPESVEDLRMN 352 (353)
T ss_dssp CTTCCEEECCSSC-CSSCCC--CCTTCCEEECC
T ss_pred cCCCCEEECcCCc-CCCCCc--cccccCeeECc
Confidence 4689999999875 888887 77788888774
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.1e-14 Score=145.37 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=84.6
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccc-ccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTV-EEG 583 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~l-s~n 583 (815)
+.+|..+|+++++|+|++|. ++.++...+ ..+++|++|+++++. +..++... +.++..+..+.. ..|
T Consensus 24 ~~iP~~ip~~~~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~ls~n~-l~~i~~~~---------~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 24 QAVPVGIPAASQRIFLHGNR-ISHVPAASF-RACRNLTILWLHSNV-LARIDAAA---------FTGLALLEQLDLSDNA 91 (284)
T ss_dssp SSCCTTCCTTCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCEECTTT---------TTTCTTCCEEECCSCT
T ss_pred CccCCCCCCCCCEEECcCCc-CCCCCHHHh-hcccccccccccccc-cccccccc---------cccccccccccccccc
Confidence 45566667778888888875 455554433 667777777777663 22222111 112223333322 223
Q ss_pred ccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC
Q 044882 584 IQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE 663 (815)
Q Consensus 584 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 663 (815)
.+.+..+..+.++++|++|++++|......+..+...++|+.+++++|.+.+..+..+..+++|++|++++| .++.++.
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~ 170 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPE 170 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECT
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC-cccccch
Confidence 333444455666666666666666543333444555566666666666654444445555666666666666 3333322
Q ss_pred C--CCCCCCceEEEcCCc
Q 044882 664 D--GLPTNLQSLTIEGNM 679 (815)
Q Consensus 664 ~--~~~~~L~~L~l~~~~ 679 (815)
. ..+++|+.+++++|.
T Consensus 171 ~~f~~l~~L~~l~l~~N~ 188 (284)
T d1ozna_ 171 RAFRGLHSLDRLLLHQNR 188 (284)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hhhccccccchhhhhhcc
Confidence 1 233444444444443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-14 Score=144.79 Aligned_cols=197 Identities=19% Similarity=0.144 Sum_probs=101.8
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccc-ccccCCCCCcCcEEec
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEAL-PKGLHNLTSLQELTIG 653 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 653 (815)
++.|++++|.+++..+..|.+++.|++|++++|......+..+..++.++.+.+..+.....+ +..+.++++|++|+++
T Consensus 34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~ 113 (284)
T d1ozna_ 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (284)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence 334444444444444445555666666666655544444444444555555555443333332 3445556666666666
Q ss_pred CCCCCCCCC-CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 654 RGVELPSLK-EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 654 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
+|......+ ..+.+.+|+.+++++|....... ..+..+++|+.|++++ +.+..++. .+|..+++|
T Consensus 114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~----~~f~~~~~L~~L~l~~--N~l~~l~~--------~~f~~l~~L 179 (284)
T d1ozna_ 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHG--NRISSVPE--------RAFRGLHSL 179 (284)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCEECT--------TTTTTCTTC
T ss_pred CcccccccccccchhcccchhhhccccccccCh----hHhccccchhhccccc--Ccccccch--------hhhcccccc
Confidence 653222111 12345556666666654332111 3455566666666665 45555554 334555666
Q ss_pred ceEEecCCCCCccc-cccCCCCCCCCeeeeCCCCCCcccCCC--CCCCccceeeecCC
Q 044882 733 TSLWISGFPNLERL-SSSIVDLQNLASLYLGDCPKLKYFPEK--GLPSSLLQLDIWGC 787 (815)
Q Consensus 733 ~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~L~i~~c 787 (815)
+.+++++| .++.+ |..+..+++|++|++++ +.+..++.. +-.++|+.|+++++
T Consensus 180 ~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 180 DRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred chhhhhhc-cccccChhHhhhhhhcccccccc-cccccccccccccccccCEEEecCC
Confidence 66666663 33333 44666666666666666 345555431 12356666666653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=1.6e-14 Score=136.28 Aligned_cols=96 Identities=23% Similarity=0.382 Sum_probs=74.5
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
.+..|+.|+++++.++.++ ++..+++|++|++++|+|+.++ .++.+++|++|++++| .+..+|. ++.+++|+.|++
T Consensus 44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~l 119 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (210)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccc-ccccccc-cccccccccccc
Confidence 4667888999999888875 4788899999999999998886 4788999999999988 7778874 888999999999
Q ss_pred cCCCcccccccccccccccccc
Q 044882 231 SNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 231 ~~~~~l~~~p~~i~~L~~L~~L 252 (815)
++|. ...++ .+..+++++.+
T Consensus 120 ~~~~-~~~~~-~l~~l~~l~~l 139 (210)
T d1h6ta2 120 EHNG-ISDIN-GLVHLPQLESL 139 (210)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEE
T ss_pred cccc-ccccc-ccccccccccc
Confidence 8887 44332 34455555444
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.52 E-value=2.8e-14 Score=133.37 Aligned_cols=80 Identities=18% Similarity=0.332 Sum_probs=60.2
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
.+.++++|+++++.++.++ .+..+++|++|++++|+++.++. ++++++|++|++++| .+..+|. ++++++|+.|++
T Consensus 38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l 113 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 113 (199)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEC
T ss_pred HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccc-ccccccc-cccccccccccc
Confidence 4567778888888877764 47777888888888888877754 778888888888877 5666664 777888888888
Q ss_pred cCCC
Q 044882 231 SNTK 234 (815)
Q Consensus 231 ~~~~ 234 (815)
+++.
T Consensus 114 ~~~~ 117 (199)
T d2omxa2 114 FNNQ 117 (199)
T ss_dssp CSSC
T ss_pred cccc
Confidence 7776
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.50 E-value=6.8e-14 Score=134.14 Aligned_cols=189 Identities=19% Similarity=0.188 Sum_probs=123.7
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++.+|+.+.+.+|.+... +++.++++|++|++++|......| +..+++|+++++++|.+. .++ .+.++++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~ 111 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKT 111 (227)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCE
T ss_pred HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccccccccc
Confidence 3445555555555555543 246677888888888776443322 566778888888877654 333 4667788888
Q ss_pred EEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCC
Q 044882 650 LTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLP 729 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 729 (815)
+++++|. ...+......+.++.+.++++..... ..+...++|+.|++++ +.+...+ .+..+
T Consensus 112 l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l~~--n~~~~~~----------~l~~l 172 (227)
T d1h6ua2 112 LDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGN--AQVSDLT----------PLANL 172 (227)
T ss_dssp EECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCS--SCCCCCG----------GGTTC
T ss_pred ccccccc-ccccchhccccchhhhhchhhhhchh------hhhccccccccccccc--cccccch----------hhccc
Confidence 8887773 33344445566777777777653321 2356677888888877 3333222 13466
Q ss_pred CccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecC
Q 044882 730 ASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWG 786 (815)
Q Consensus 730 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~ 786 (815)
++|++|++++| .++.++ .+.++++|++|++++| +++.++..+.+++|+.|++++
T Consensus 173 ~~L~~L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 173 SKLTTLKADDN-KISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN 226 (227)
T ss_dssp TTCCEEECCSS-CCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred ccceecccCCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence 78888888884 677776 4778888888888886 688887655567888888763
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=4.9e-14 Score=135.16 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=65.7
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+.+|+.|++.+|+|+.++ .+.++++|++|++++|.|..++. +.++++|+++++++| .++.++. ++++++|+.++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~~-l~~l~~L~~l~ 113 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSA-IAGLQSIKTLD 113 (227)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG-GTTCTTCCEEE
T ss_pred HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccc-ccccccc-ccccccccccc
Confidence 56777888888888888884 58888889999998888887753 788888888888888 6666664 78888888888
Q ss_pred ccCCC
Q 044882 230 NSNTK 234 (815)
Q Consensus 230 l~~~~ 234 (815)
++++.
T Consensus 114 l~~~~ 118 (227)
T d1h6ua2 114 LTSTQ 118 (227)
T ss_dssp CTTSC
T ss_pred ccccc
Confidence 88776
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.44 E-value=2.3e-13 Score=126.99 Aligned_cols=162 Identities=21% Similarity=0.247 Sum_probs=105.6
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEE
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLT 674 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 674 (815)
.++++++|++++|.. ..++ ++..+++|++|++++|++.+. + .+.++++|++|++++| .+..++..+.+++|+.|+
T Consensus 38 ~l~~l~~L~l~~~~i-~~l~-~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~ 112 (199)
T d2omxa2 38 DLDQVTTLQADRLGI-KSID-GVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNN-QIADITPLANLTNLTGLT 112 (199)
T ss_dssp HHTTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEE
T ss_pred HhcCCCEEECCCCCC-CCcc-ccccCCCcCcCccccccccCc-c-cccCCccccccccccc-cccccccccccccccccc
Confidence 356777777777753 3332 455677777777777765443 2 2677777788887777 444455556677777777
Q ss_pred EcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCC
Q 044882 675 IEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQ 754 (815)
Q Consensus 675 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~ 754 (815)
+++|..... ..+..+++|+.|++++ +.+..++. +..+++|+.|++.+ +.++.++ .+.+++
T Consensus 113 l~~~~~~~~------~~~~~l~~L~~L~l~~--n~l~~~~~----------l~~~~~L~~L~l~~-n~l~~l~-~l~~l~ 172 (199)
T d2omxa2 113 LFNNQITDI------DPLKNLTNLNRLELSS--NTISDISA----------LSGLTSLQQLNFSS-NQVTDLK-PLANLT 172 (199)
T ss_dssp CCSSCCCCC------GGGTTCTTCSEEECCS--SCCCCCGG----------GTTCTTCSEEECCS-SCCCCCG-GGTTCT
T ss_pred ccccccccc------cccchhhhhHHhhhhh--hhhccccc----------cccccccccccccc-ccccCCc-cccCCC
Confidence 777764431 2356677888888877 34444321 24567888888888 4677776 477888
Q ss_pred CCCeeeeCCCCCCcccCCCCCCCcccee
Q 044882 755 NLASLYLGDCPKLKYFPEKGLPSSLLQL 782 (815)
Q Consensus 755 ~L~~L~i~~c~~l~~l~~~~~~~~L~~L 782 (815)
+|++|++++| +++.++..+.+++|++|
T Consensus 173 ~L~~L~ls~N-~i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 173 TLERLDISSN-KVSDISVLAKLTNLESL 199 (199)
T ss_dssp TCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred CCCEEECCCC-CCCCCccccCCCCCCcC
Confidence 8888888886 57777643334556554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=9.5e-15 Score=145.03 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=111.7
Q ss_pred cccccccccccccccC-cccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccc--cccccCCCCCcCc
Q 044882 573 DNIRTLTVEEGIQSSS-SRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEA--LPKGLHNLTSLQE 649 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~ 649 (815)
.+|++++++++.+++. ....+.++++|++|++++|+.....+..+..+++|++|++++|..++. +.....++++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 3455555555554433 233456788888888888875555555566678888888888765442 2223456788888
Q ss_pred EEecCCCCCCCCC--C-C-CCCCCCceEEEcCCcc-hhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcccccccc
Q 044882 650 LTIGRGVELPSLK--E-D-GLPTNLQSLTIEGNME-IWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGT 724 (815)
Q Consensus 650 L~l~~~~~~~~~~--~-~-~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 724 (815)
|++++|..++... . . ..+++|+.|++++|.. +...... ..+.++++|++|++++ |..++.-.. .
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~--~l~~~~~~L~~L~L~~-~~~itd~~~--------~ 194 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNLVHLDLSD-SVMLKNDCF--------Q 194 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTCSEEECTT-CTTCCGGGG--------G
T ss_pred cccccccccccccchhhhcccccccchhhhccccccccccccc--cccccccccccccccc-ccCCCchhh--------h
Confidence 8888886654311 0 1 2356788888887642 2221111 2345678888888887 344432111 1
Q ss_pred CCCCCCccceEEecCCCCCccc-cccCCCCCCCCeeeeCCC
Q 044882 725 ALPLPASLTSLWISGFPNLERL-SSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 725 ~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~c 764 (815)
.+..+++|++|++++|+.++.- ...+.++++|++|++++|
T Consensus 195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 2345678888888888777542 235667788888888877
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.41 E-value=3.2e-13 Score=127.16 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=93.5
Q ss_pred CCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEE
Q 044882 596 LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTI 675 (815)
Q Consensus 596 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 675 (815)
+.+|++|++++|.. +.++ ++..+++|++|++++|++.+ ++ .+..+++|++|++++| .++.++....+++|+.|++
T Consensus 45 L~~L~~L~l~~~~i-~~l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l 119 (210)
T d1h6ta2 45 LNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSL 119 (210)
T ss_dssp HHTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEEC
T ss_pred hcCccEEECcCCCC-CCch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccc-ccccccccccccccccccc
Confidence 44566666666543 2222 34455666666666665443 22 2455666666666666 4555555555566666666
Q ss_pred cCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCC
Q 044882 676 EGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQN 755 (815)
Q Consensus 676 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 755 (815)
++|..... ..+..++.++.+++++ +.+...+. +..+++|+.+++++ +.++.++ .+.++++
T Consensus 120 ~~~~~~~~------~~l~~l~~l~~l~~~~--n~l~~~~~----------~~~l~~L~~l~l~~-n~l~~i~-~l~~l~~ 179 (210)
T d1h6ta2 120 EHNGISDI------NGLVHLPQLESLYLGN--NKITDITV----------LSRLTKLDTLSLED-NQISDIV-PLAGLTK 179 (210)
T ss_dssp TTSCCCCC------GGGGGCTTCCEEECCS--SCCCCCGG----------GGGCTTCSEEECCS-SCCCCCG-GGTTCTT
T ss_pred cccccccc------cccccccccccccccc--cccccccc----------cccccccccccccc-ccccccc-cccCCCC
Confidence 66643221 2355566666666665 33333221 13456777777777 3556665 3667777
Q ss_pred CCeeeeCCCCCCcccCCCCCCCccceeeecC
Q 044882 756 LASLYLGDCPKLKYFPEKGLPSSLLQLDIWG 786 (815)
Q Consensus 756 L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~ 786 (815)
|++|++++| .++.++...-+++|++|++++
T Consensus 180 L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 180 LQNLYLSKN-HISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp CCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred CCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence 777777764 566666533446777777653
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=3.8e-13 Score=113.69 Aligned_cols=93 Identities=25% Similarity=0.321 Sum_probs=54.0
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCc
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKS 235 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 235 (815)
|+|+|++|+++.++. ++.+.+|++|++++|.|+.+|..++.+++|++|++++| .+..+|. ++.+++|++|++++|.
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~N~- 76 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNR- 76 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCc-cccccccCeEECCCCc-
Confidence 456666666665542 55666666666666666666655666666666666665 5555553 5666666666666665
Q ss_pred cccccc--ccccccccccc
Q 044882 236 LEEMPV--GIGRLTSLQTL 252 (815)
Q Consensus 236 l~~~p~--~i~~L~~L~~L 252 (815)
+..+|. .++.+++|+.|
T Consensus 77 i~~~~~~~~l~~~~~L~~L 95 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLL 95 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEE
T ss_pred cCCCCCchhhcCCCCCCEE
Confidence 444432 24455555555
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=3.8e-13 Score=113.75 Aligned_cols=92 Identities=24% Similarity=0.292 Sum_probs=81.6
Q ss_pred cccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccc--hhhcCcC
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLA 223 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~ 223 (815)
++.+..+++|++|++++|.++.+|..++.+++|++|++++|.|+.+| .++++++|++|++++| .+..+| ..++.++
T Consensus 13 l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~ 90 (124)
T d1dcea3 13 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCP 90 (124)
T ss_dssp CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCT
T ss_pred CcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC-ccCCCCCchhhcCCC
Confidence 34578899999999999999999999999999999999999999997 5999999999999999 777776 4588999
Q ss_pred CcceeeccCCCcccccc
Q 044882 224 KLHHLKNSNTKSLEEMP 240 (815)
Q Consensus 224 ~L~~L~l~~~~~l~~~p 240 (815)
+|++|++++|. +...+
T Consensus 91 ~L~~L~l~~N~-i~~~~ 106 (124)
T d1dcea3 91 RLVLLNLQGNS-LCQEE 106 (124)
T ss_dssp TCCEEECTTSG-GGGSS
T ss_pred CCCEEECCCCc-CCcCc
Confidence 99999999998 54443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.4e-12 Score=124.74 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=49.1
Q ss_pred cccEEEcCCCCccccCc-cccCCccCCEEecCCCCCCc-cc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceee
Q 044882 154 RLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTEIRT-LP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLK 229 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~-lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 229 (815)
++++|++++|.|+.+|. +|.++++|++|++++|.+.. +| ..+.++++++++++..+..+..++ ..+.++++|++|+
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 56667777776666653 46666677777777666553 33 445666666666665443443333 3456666777777
Q ss_pred ccCCC
Q 044882 230 NSNTK 234 (815)
Q Consensus 230 l~~~~ 234 (815)
++++.
T Consensus 110 l~~~~ 114 (242)
T d1xwdc1 110 ISNTG 114 (242)
T ss_dssp EESCC
T ss_pred cchhh
Confidence 66665
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.7e-12 Score=125.84 Aligned_cols=193 Identities=18% Similarity=0.132 Sum_probs=111.6
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEeccc-ccccccccccCCCCCcCcEEe
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISSC-KRLEALPKGLHNLTSLQELTI 652 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l 652 (815)
++.|++++|.+....+..|.++++|++|++++|.....++. .+..+++++++.+.++ .+....+..+.++++|+++++
T Consensus 31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l 110 (242)
T d1xwdc1 31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 110 (242)
T ss_dssp CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc
Confidence 34444444554444444566777777777777766655443 4556777777776654 333444455677777888877
Q ss_pred cCCCCCCCCCCCCCCCCCceEEE---cCCcchhhhhhhcCcCcccCC-CccEEEEeccCCCcccCCCCccccccccCCCC
Q 044882 653 GRGVELPSLKEDGLPTNLQSLTI---EGNMEIWKSMIERGRGFHRFS-SLRQLTIINCDDDMVSFPPKADDKRLGTALPL 728 (815)
Q Consensus 653 ~~~~~~~~~~~~~~~~~L~~L~l---~~~~~l~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (815)
++| .+...+....+.+++.+.. .++.... .. ...+.+++ .++.|++.+ +.+..++. . . ..
T Consensus 111 ~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~-i~---~~~~~~~~~~l~~L~l~~--n~l~~i~~----~----~-~~ 174 (242)
T d1xwdc1 111 SNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT-IE---RNSFVGLSFESVILWLNK--NGIQEIHN----C----A-FN 174 (242)
T ss_dssp ESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCE-EC---TTSSTTSBSSCEEEECCS--SCCCEECT----T----T-TT
T ss_pred chh-hhccccccccccccccccccccccccccc-cc---ccccccccccceeeeccc--cccccccc----c----c-cc
Confidence 777 4544544444444444432 2222111 11 12344443 666777766 56666655 1 1 13
Q ss_pred CCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeec
Q 044882 729 PASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIW 785 (815)
Q Consensus 729 ~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~ 785 (815)
.++++++....++.++.+|. .+.++++|++|+++++ +++.+|..+ +.+|..|.+-
T Consensus 175 ~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~l 230 (242)
T d1xwdc1 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG-LENLKKLRAR 230 (242)
T ss_dssp TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSS-CTTCCEEESS
T ss_pred chhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHHH-HcCCcccccC
Confidence 35666666556678888876 4677888888888874 577777643 3444444433
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.4e-14 Score=142.11 Aligned_cols=159 Identities=18% Similarity=0.314 Sum_probs=79.9
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCccc--ccCCCCCCCCcceEEecccccccc--ccccc-CCC
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVS--FPEGGLPCAKLTRLEISSCKRLEA--LPKGL-HNL 644 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~-~~l 644 (815)
.+|++|++|.++++.+++.....+..+++|++|++++|...+. +......+++|++|++++|..... +...+ ...
T Consensus 68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~ 147 (284)
T d2astb2 68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 147 (284)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccc
Confidence 4555666666655555555555566666667777666654432 111123356666777666643321 11112 223
Q ss_pred CCcCcEEecCCC-CCCC--CCCC-CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcccc
Q 044882 645 TSLQELTIGRGV-ELPS--LKED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDK 720 (815)
Q Consensus 645 ~~L~~L~l~~~~-~~~~--~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 720 (815)
++|+.|++++|. .++. +... ..+++|++|++++|..+..... ..+.++++|++|++++| ..+..-
T Consensus 148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~---~~l~~~~~L~~L~L~~C-~~i~~~------- 216 (284)
T d2astb2 148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNYLQHLSLSRC-YDIIPE------- 216 (284)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTTCCEEECTTC-TTCCGG-------
T ss_pred cccchhhhcccccccccccccccccccccccccccccccCCCchhh---hhhcccCcCCEEECCCC-CCCChH-------
Confidence 566666666652 2221 1111 2356666777766654442221 24555666667776663 333221
Q ss_pred ccccCCCCCCccceEEecCC
Q 044882 721 RLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 721 ~l~~~~~~~~~L~~L~l~~c 740 (815)
++ ..+..+++|+.|++++|
T Consensus 217 ~l-~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 217 TL-LELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GG-GGGGGCTTCCEEECTTS
T ss_pred HH-HHHhcCCCCCEEeeeCC
Confidence 11 11234566666666666
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.4e-12 Score=116.26 Aligned_cols=130 Identities=18% Similarity=0.113 Sum_probs=98.5
Q ss_pred cccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchh-h
Q 044882 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPES-V 195 (815)
Q Consensus 117 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i 195 (815)
+.+.+..++|.|.+.++. + ..++..+..+++|++|+|++|.|+.++ .+..+++|++|++++|.++.+|.. +
T Consensus 12 ~~~~n~~~lr~L~L~~n~------I-~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~ 83 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYK------I-PVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLD 83 (162)
T ss_dssp CEEECTTSCEEEECTTSC------C-CSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred HhccCcCcCcEEECCCCC------C-CccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccc
Confidence 445567788888877754 2 223333467888999999999998884 588889999999999999988754 4
Q ss_pred hccCCCcEEeccCCccccccch--hhcCcCCcceeeccCCCccccccc----cccccccccccccee
Q 044882 196 NKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFV 256 (815)
Q Consensus 196 ~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~ 256 (815)
..+++|++|++++| .+..++. .+..+++|++|++++|. +...|. .++.+++|+.|+...
T Consensus 84 ~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~ 148 (162)
T d1a9na_ 84 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 148 (162)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ccccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCC
Confidence 67899999999998 6766653 57788999999999987 666663 367788888886443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.3e-12 Score=116.37 Aligned_cols=105 Identities=28% Similarity=0.383 Sum_probs=89.7
Q ss_pred ccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhh-cCcCCc
Q 044882 147 PKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAKL 225 (815)
Q Consensus 147 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L 225 (815)
+.+.++..+|.|+|++|+|+.+|..+..+.+|++|+|++|.|+.++ .+..+++|++|++++| .+..+|..+ ..+++|
T Consensus 12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 89 (162)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCcccccccccc
Confidence 3456778899999999999999877788999999999999999985 5899999999999999 788887664 679999
Q ss_pred ceeeccCCCccccccc--ccccccccccccc
Q 044882 226 HHLKNSNTKSLEEMPV--GIGRLTSLQTLCN 254 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~ 254 (815)
++|++++|. +..++. .+..+++|++|+.
T Consensus 90 ~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l 119 (162)
T d1a9na_ 90 TELILTNNS-LVELGDLDPLASLKSLTYLCI 119 (162)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEEC
T ss_pred ccceecccc-ccccccccccccccccchhhc
Confidence 999999998 776654 4677778887754
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.15 E-value=6.8e-12 Score=116.04 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=38.9
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEe
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 652 (815)
++|+.|++++|.+.+..+..+..+++|++|++++|+.....+..|..+++|++|+|++|.+.+..+..|..+++|++|++
T Consensus 54 ~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L 133 (192)
T d1w8aa_ 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred ceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccc
Confidence 33444444444444444444444555555555555433333334444555555555555544444444445555555555
Q ss_pred cCC
Q 044882 653 GRG 655 (815)
Q Consensus 653 ~~~ 655 (815)
++|
T Consensus 134 ~~N 136 (192)
T d1w8aa_ 134 ASN 136 (192)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.6e-13 Score=146.06 Aligned_cols=85 Identities=22% Similarity=0.300 Sum_probs=54.8
Q ss_pred ccCCCcccEEEcCCCCcc-----ccCccccCCccCCEEecCCCCCCccc-hhhhc-----cCCCcEEeccCCcccc----
Q 044882 149 LFKLQRLRAFSLRGYHIF-----ELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNK-----LYNLHSLLLEDCDRLK---- 213 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~-----L~~L~~L~L~~~~~l~---- 213 (815)
+..++++|+|+|++|.++ .+...+..+++|++|||++|.|+... ..+.. ..+|++|+|++| .+.
T Consensus 23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~ 101 (460)
T d1z7xw1 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC 101 (460)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC-Ccccccc
Confidence 356777778888887765 23455667777888888877775321 22221 246788888777 343
Q ss_pred -ccchhhcCcCCcceeeccCCC
Q 044882 214 -KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 214 -~lp~~i~~L~~L~~L~l~~~~ 234 (815)
.++..+..+++|++|++++|.
T Consensus 102 ~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 102 GVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB
T ss_pred ccccchhhcccccccccccccc
Confidence 245556677778888887776
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=5.4e-13 Score=143.50 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=30.4
Q ss_pred cCCEEecCCCCCCcc--chhhhccCCCcEEeccCCcccc-----ccchhhcCcCCcceeeccCCC
Q 044882 177 YLRYLNLSGTEIRTL--PESVNKLYNLHSLLLEDCDRLK-----KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 177 ~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 234 (815)
+|++||+++++|+.. ..-+..+++|++|+|++| .+. .++..+..+++|++|++++|.
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~ 66 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE 66 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc
Confidence 455555555555522 233455556666666665 232 334445566666666666654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.09 E-value=2.7e-12 Score=118.73 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=82.0
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.+..+++|+.|.+.++. +. ..+.+..+++|++|+|++|.|+.+|..+..+.+|++|++++|.|+.++ .+.+
T Consensus 43 sl~~L~~L~~L~Ls~n~------I~--~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~ 113 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNN------IE--KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCCEEECSEEE------ES--CCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHH
T ss_pred HHhcccccceeECcccC------CC--CcccccCCccccChhhcccccccccccccccccccccccccccccccc-cccc
Confidence 46678888888776543 22 234567788888888888888888766666678888888888888774 5788
Q ss_pred cCCCcEEeccCCccccccc--hhhcCcCCcceeeccCCC
Q 044882 198 LYNLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 234 (815)
+++|++|++++| .+..++ ..++.+++|+.|++++|.
T Consensus 114 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence 888888888888 666665 357888888888888886
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.02 E-value=3e-10 Score=104.72 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=83.4
Q ss_pred cccccccccccccc-CcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEe
Q 044882 574 NIRTLTVEEGIQSS-SSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652 (815)
Q Consensus 574 ~L~~l~ls~n~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 652 (815)
+++.|++++|.+++ ..+..|.++++|++|++++|......+..+..+++|++|++++|++....+..|.++++|++|+|
T Consensus 30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L 109 (192)
T d1w8aa_ 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence 45666777777765 33556788899999999999877777778888899999999999887777777889999999999
Q ss_pred cCCCCCCCCCCC--CCCCCCceEEEcCCcch
Q 044882 653 GRGVELPSLKED--GLPTNLQSLTIEGNMEI 681 (815)
Q Consensus 653 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l 681 (815)
++| .++.++.. ..+++|++|++++|+..
T Consensus 110 ~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 110 YDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCc-cccccCHHHhcCCcccccccccccccc
Confidence 998 56666543 46678888888887643
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.90 E-value=2e-11 Score=112.71 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=90.8
Q ss_pred ccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCC
Q 044882 145 ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAK 224 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 224 (815)
++..+..+++|++|+|++|+|+.++ .+..+++|++|++++|.|+.+|.....+++|++|++++| .+..++. +..+++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~-~~~l~~ 116 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG-IEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHHH-HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-ccccccc-cccccc
Confidence 3456778999999999999999986 589999999999999999999877777889999999999 7887764 889999
Q ss_pred cceeeccCCCccccccc--ccccccccccccc
Q 044882 225 LHHLKNSNTKSLEEMPV--GIGRLTSLQTLCN 254 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~ 254 (815)
|++|++++|. +..++. .++.+++|+.|+.
T Consensus 117 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L 147 (198)
T d1m9la_ 117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp SSEEEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred ccccccccch-hccccccccccCCCccceeec
Confidence 9999999998 666653 4778888888843
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.8e-09 Score=93.64 Aligned_cols=90 Identities=20% Similarity=0.171 Sum_probs=75.4
Q ss_pred cccccccCCCcccEEEcCCC-CccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccchhhc
Q 044882 144 SILPKLFKLQRLRAFSLRGY-HIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMG 220 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~-~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 220 (815)
..|..+..+++|+.|+++++ .++.++ .+|.++++|++|+|++|+|+.++ ..+..+++|++|+|++| .+..+|.++.
T Consensus 22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~ 100 (156)
T d2ifga3 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (156)
T ss_dssp TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhhh
Confidence 45666777888999999766 488885 56889999999999999999885 67889999999999998 7888888776
Q ss_pred CcCCcceeeccCCC
Q 044882 221 NLAKLHHLKNSNTK 234 (815)
Q Consensus 221 ~L~~L~~L~l~~~~ 234 (815)
...+|++|++++|.
T Consensus 101 ~~~~l~~L~L~~Np 114 (156)
T d2ifga3 101 QGLSLQELVLSGNP 114 (156)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccccccccccCCCc
Confidence 66689999999887
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=9.2e-09 Score=90.28 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=84.0
Q ss_pred cccEEEcCCCCccccCccccCCccCCEEecCCC-CCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeec
Q 044882 154 RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGT-EIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKN 230 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~-~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 230 (815)
...+++.+++.+...|..+..+++|++|+++++ .|+.++ .+|.++++|+.|++++| .+..++ ..|..+++|++|++
T Consensus 9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceec
Confidence 345688899999999999999999999999866 599887 67899999999999999 788875 56899999999999
Q ss_pred cCCCccccccccccccccccccc
Q 044882 231 SNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 231 ~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
++|. +..+|.++....+|+.|+
T Consensus 88 s~N~-l~~l~~~~~~~~~l~~L~ 109 (156)
T d2ifga3 88 SFNA-LESLSWKTVQGLSLQELV 109 (156)
T ss_dssp CSSC-CSCCCSTTTCSCCCCEEE
T ss_pred cCCC-CcccChhhhccccccccc
Confidence 9999 889998855555677774
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.51 E-value=1.5e-09 Score=110.72 Aligned_cols=134 Identities=12% Similarity=0.134 Sum_probs=65.7
Q ss_pred cccccccccccccccccCc----ccccCCCCCCceEEeccCCCcccc----cC---------CCCCCCCcceEEeccccc
Q 044882 571 KCDNIRTLTVEEGIQSSSS----RSGLHNLRQLQEISIRRCGNLVSF----PE---------GGLPCAKLTRLEISSCKR 633 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~----~~---------~~~~l~~L~~L~l~~~~~ 633 (815)
.|++|+.+++++|.+.... ...+...++|++|++++|.....- .. .....+.|+.+.+++|.+
T Consensus 91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i 170 (344)
T d2ca6a1 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 170 (344)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence 4556666666666554432 222334566777777766532100 00 011235666677666654
Q ss_pred cc----ccccccCCCCCcCcEEecCCCCCCC------CC-CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEE
Q 044882 634 LE----ALPKGLHNLTSLQELTIGRGVELPS------LK-EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLT 702 (815)
Q Consensus 634 ~~----~~~~~~~~l~~L~~L~l~~~~~~~~------~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 702 (815)
.. .+...+...++|++|++++|. +.. +. .....++|+.|++++|.............+..+++|++|+
T Consensus 171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~ 249 (344)
T d2ca6a1 171 ENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249 (344)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred cccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence 32 122234455667777776663 221 11 1123456666666666543322221113445566666666
Q ss_pred Eec
Q 044882 703 IIN 705 (815)
Q Consensus 703 l~~ 705 (815)
+++
T Consensus 250 Ls~ 252 (344)
T d2ca6a1 250 LND 252 (344)
T ss_dssp CTT
T ss_pred hhc
Confidence 666
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.36 E-value=1.1e-08 Score=103.99 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=138.1
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccccccc----------CcccccCCCCCCceEEec
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSS----------SSRSGLHNLRQLQEISIR 605 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~----------~~~~~~~~l~~L~~L~l~ 605 (815)
.....+++|++++|. +.......+... +..+++|+.+.++++.... .+...+...++|+.|+++
T Consensus 28 ~~~~~l~~L~Ls~n~-i~~~~~~~l~~~-----l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 28 LEDDSVKEIVLSGNT-IGTEAARWLSEN-----IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp HHCSCCCEEECTTSE-ECHHHHHHHHHT-----TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred hhCCCCCEEECcCCc-CCHHHHHHHHHH-----HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 567889999999873 332221111101 1233444444444332211 122345667899999999
Q ss_pred cCCCccc----ccCCCCCCCCcceEEecccccccccc----c---------ccCCCCCcCcEEecCCCCCCCCC-----C
Q 044882 606 RCGNLVS----FPEGGLPCAKLTRLEISSCKRLEALP----K---------GLHNLTSLQELTIGRGVELPSLK-----E 663 (815)
Q Consensus 606 ~~~~l~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~---------~~~~l~~L~~L~l~~~~~~~~~~-----~ 663 (815)
+|..... +...+...++|++|++++|.+...-. . .....+.|+.+.+++|. ++.-. .
T Consensus 102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~ 180 (344)
T d2ca6a1 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK 180 (344)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH
T ss_pred ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc-ccccccccccc
Confidence 9864332 22233456899999999997532110 0 12356789999999883 33211 0
Q ss_pred -CCCCCCCceEEEcCCcchhhhhhh-cCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCC
Q 044882 664 -DGLPTNLQSLTIEGNMEIWKSMIE-RGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFP 741 (815)
Q Consensus 664 -~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 741 (815)
....++|++|++++|......... ....+..+++|+.|++++ +.+..... ..+...+...++|++|++++|+
T Consensus 181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~--N~i~~~g~----~~L~~~l~~~~~L~~L~Ls~n~ 254 (344)
T d2ca6a1 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD--NTFTHLGS----SALAIALKSWPNLRELGLNDCL 254 (344)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS--SCCHHHHH----HHHHHHGGGCTTCCEEECTTCC
T ss_pred hhhhhhhhcccccccccccccccccchhhhhcchhhhccccccc--cccccccc----ccccccccccccchhhhhhcCc
Confidence 124578999999998754322111 114577889999999988 33322100 1122234566889999999975
Q ss_pred CCcc-----ccccC--CCCCCCCeeeeCCCCCCcc-----cCCC--CCCCccceeeecCCc
Q 044882 742 NLER-----LSSSI--VDLQNLASLYLGDCPKLKY-----FPEK--GLPSSLLQLDIWGCP 788 (815)
Q Consensus 742 ~l~~-----l~~~~--~~l~~L~~L~i~~c~~l~~-----l~~~--~~~~~L~~L~i~~c~ 788 (815)
++. +-..+ ...+.|++|+|++| +++. +... .-.++|++|+++++.
T Consensus 255 -i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 255 -LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp -CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -cCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 433 22222 23578999999985 4543 1110 123679999998865
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.8e-07 Score=80.36 Aligned_cols=61 Identities=30% Similarity=0.200 Sum_probs=33.6
Q ss_pred cCCccCCEEecCCCCCCcc---chhhhccCCCcEEeccCCccccccch-hhcCcCCcceeeccCCC
Q 044882 173 GDLRYLRYLNLSGTEIRTL---PESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 173 ~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 234 (815)
..+++|++|+|++|+|+.+ +..+..+++|++|+|++| .+..++. ...+..+|+.|++++|.
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCC
Confidence 4455666666666666544 233455666666666666 5555543 12233456666666665
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=2.9e-06 Score=74.50 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=61.1
Q ss_pred cCCCcccEEEcCCCCccccC---ccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCcccccc-c-------h
Q 044882 150 FKLQRLRAFSLRGYHIFELP---DSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKL-C-------A 217 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p-------~ 217 (815)
..++.|++|+|++|+|+.++ ..+..+++|++|+|++|.|+.++. ...+..+|+.|++++| .+... . .
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N-pl~~~~~~~~~y~~~ 140 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN-SLSDTFRDQSTYISA 140 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS-TTSSSSSSHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC-CcCcCcccchhHHHH
Confidence 57899999999999998763 456789999999999999998874 3344567999999999 44322 1 2
Q ss_pred hhcCcCCcceee
Q 044882 218 DMGNLAKLHHLK 229 (815)
Q Consensus 218 ~i~~L~~L~~L~ 229 (815)
.+..+++|+.||
T Consensus 141 i~~~~P~L~~LD 152 (162)
T d1koha1 141 IRERFPKLLRLD 152 (162)
T ss_dssp HHTTSTTCCEET
T ss_pred HHHHCCCCCEEC
Confidence 256678888776
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.50 E-value=0.00064 Score=59.26 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=17.2
Q ss_pred cCCCcccEEEcCCCCccc-----cCccccCCccCCEEecCCCCCC
Q 044882 150 FKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTEIR 189 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~ 189 (815)
...+.|++|+|++|.+.. +...+...+.|++|+|++|.|.
T Consensus 41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence 344445555555544431 1122333344555555555444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.26 E-value=0.0025 Score=55.27 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=62.3
Q ss_pred cCCCcccEEEcCCC-Ccc-----ccCccccCCccCCEEecCCCCCC-----ccchhhhccCCCcEEeccCCcccc-----
Q 044882 150 FKLQRLRAFSLRGY-HIF-----ELPDSIGDLRYLRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCDRLK----- 213 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~----- 213 (815)
.+.+.|+.|+|+++ .+. .+-.++...++|++|+|++|.+. .+...+...+.|++|++++| .+.
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~ 90 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 90 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHH
Confidence 45678999999874 454 23345677789999999999886 23355667789999999999 443
Q ss_pred ccchhhcCcCCcceeeccCCC
Q 044882 214 KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 214 ~lp~~i~~L~~L~~L~l~~~~ 234 (815)
.+-..+..-+.|++|+++++.
T Consensus 91 ~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 91 RLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHhCCcCCEEECCCCc
Confidence 233446677889999998875
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.38 E-value=0.0043 Score=53.74 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=16.0
Q ss_pred CCCcccEEEcCCCCccc-----cCccccCCccCCEEecCCCCC
Q 044882 151 KLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTEI 188 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i 188 (815)
..++|+.|++++|.+.. +-..+...+.++.++++++.+
T Consensus 44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~ 86 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 86 (166)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence 34444445554444331 112233334444444444444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=94.77 E-value=0.016 Score=49.99 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=58.4
Q ss_pred cCCCcccEEEcCC-CCcc-----ccCccccCCccCCEEecCCCCCCc-----cchhhhccCCCcEEeccCCccc----cc
Q 044882 150 FKLQRLRAFSLRG-YHIF-----ELPDSIGDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLLEDCDRL----KK 214 (815)
Q Consensus 150 ~~l~~Lr~L~L~~-~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l----~~ 214 (815)
.+.+.|+.|+|++ +.++ .+-.++...++|+.|++++|.+.. +-..+...+.++.+++++|..- ..
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 4567899999987 4454 233556778899999999998862 3345667788999999988321 23
Q ss_pred cchhhcCcCCcceeeccC
Q 044882 215 LCADMGNLAKLHHLKNSN 232 (815)
Q Consensus 215 lp~~i~~L~~L~~L~l~~ 232 (815)
+-..+...++|+.+++..
T Consensus 94 l~~~l~~~~~L~~l~L~l 111 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDN 111 (166)
T ss_dssp HHHGGGGCSSCCEEECCC
T ss_pred HHHHHHhCccccEEeecc
Confidence 445567778888766654
|