Citrus Sinensis ID: 044902

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MRSKARILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRHGSVTGGSKSGEVGTRGDSESEDENNE
Secondary Structure (PSIPRED)
cccccHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccHHccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEEEcccEEEEEEEEccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEcHHHHHHHHHHccccccHHHHHHHcccHEEEEccccccccEEcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHccccEEEEcccccccEEEEEcccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHcccEEEEEcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MRSKARILESIlkhpttstfirsktTSAQYvasrfrdptFEKLMDKYKNYIKVISVQDLIlanrnsppsvsLEFLSRLSQKLHLNRGATAflrkyphifhifydpvksqpfcklTETAVEISRQEAEAINACLSLVVERLVRLLSmstskslplRAVFKVWRelglpddfedsviarnpkifrrcagnepnihrdftAAVDNWRVTECCKEDCKVERMELRygfkqgfpsgmrlgkDFKGRVkewqrlpyvgpyeemgeskktkAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGidfnirdlfldhpgifylstkgkrHTVFLREAYergqliepnpvydVRRKLLDLVFLgrhgsvtggsksgevgtrgdsesedenne
Flexible Loop (DISEMBL)
MRSKARILESilkhpttstfirskttsaqyvasrfrdptfEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVRLLSmstskslplraVFKVWRELglpddfedsviaRNPKIFrrcagnepnihrdftaavdnwrvTECCKEDCKVERMELRYgfkqgfpsgmrlgKDFKGRVKEWQRlpyvgpyeemgeskktkagvkRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAyergqliepnpvydVRRKLLDLVFLgrhgsvtggsksgevgtrgdsesedenne
Low Complexity Region (SEG)
MRSKARILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINAClslvverlvrllsMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRHGSVTGGSKSGEVGTRGDSESEDENNE
Disordered region (IsUnstruct)
******************TFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNS**SVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPY************VKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRHG*************************
Disordered Region (DISOPRED)
*********************************RFRDPTFEKLMDKYKNYIKVISVQDLILANR****SVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRV******************FKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKK*****KRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLV*******************************
Disordered Region (DISEMBL)
MRSKARILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRHGSVTG*********************
Disordered Region (DISPRO)
*******LE**************KTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFL*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSKARILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRHGSVTGGSKSGEVGTRGDSESEDENNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
255561588	399	conserved hypothetical protein [Ricinus	0.992	0.967	0.693	1e-161
225433457	400	PREDICTED: uncharacterized protein LOC10	0.971	0.945	0.704	1e-158
297848922	390	hypothetical protein ARALYDRAFT_887847 [	0.940	0.938	0.716	1e-157
224147834	356	predicted protein [Populus trichocarpa]	0.879	0.960	0.774	1e-157
225466181	400	PREDICTED: uncharacterized protein LOC10	0.930	0.905	0.732	1e-157
356537736	402	PREDICTED: uncharacterized protein LOC10	0.958	0.927	0.705	1e-155
15221480	390	ubiquitin carboxyl-terminal hydrolase-li	0.956	0.953	0.688	1e-155
147856032	1831	hypothetical protein VITISV_003657 [Viti	0.930	0.197	0.724	1e-155
298205208	383	unnamed protein product [Vitis vinifera]	0.953	0.968	0.707	1e-152
224065395	349	predicted protein [Populus trichocarpa]	0.863	0.962	0.767	1e-152

>gi|255561588|ref|XP_002521804.1| conserved hypothetical protein [Ricinus communis] gi|223539017|gb|EEF40614.1| conserved hypothetical protein [Ricinus communis]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/398 (69%), Positives = 329/398 (82%), Gaps = 12/398 (3%)

Query: 4   KARILESILKHP-TTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILA 62
           + +IL+S+LKHP   S  +RSKTTS QYVASR RDPTFEKLM+KYKN +KVI++QDLILA
Sbjct: 2   RTQILKSVLKHPFMVSITVRSKTTSGQYVASRSRDPTFEKLMEKYKNLVKVIAIQDLILA 61

Query: 63  N-RNSPPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEI 121
           N  NSPPSVS++FLSRLSQKLHLNRGA +FLR+YPHIF+IFY+   SQPFC+LT+ A++I
Sbjct: 62  NPTNSPPSVSVDFLSRLSQKLHLNRGAASFLRRYPHIFNIFYNSTLSQPFCRLTDIALQI 121

Query: 122 SRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKI 181
           S QEAE+I ACL +VV+ LVRLLSMSTSKSLPLRA+FKVWRELGLPDDFEDS+I++NP +
Sbjct: 122 SCQEAESIKACLPVVVDHLVRLLSMSTSKSLPLRAIFKVWRELGLPDDFEDSLISQNPHL 181

Query: 182 FRRCAGNEPNIH----------RDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSG 231
           FR C  +EPN H            F+AAVD WRVTECCKEDC V+R E+++ FK  +P G
Sbjct: 182 FRLCDAHEPNTHILKLVEEIPDNHFSAAVDIWRVTECCKEDCSVDRTEIQFSFKHQYPPG 241

Query: 232 MRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVE 291
           MR+ K+F+ +VKEWQRLPY+GPYE++GE+K++KAG+  LEKR+VAIVHEFLSLTVEKMVE
Sbjct: 242 MRVSKNFRAKVKEWQRLPYIGPYEKVGENKRSKAGMMGLEKRSVAIVHEFLSLTVEKMVE 301

Query: 292 VEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVR 351
           VEKISHFRK FGID NIRD+FLDHPGIFYLSTKGKRHTVFLREAYERG LI+PNPVYDVR
Sbjct: 302 VEKISHFRKSFGIDLNIRDMFLDHPGIFYLSTKGKRHTVFLREAYERGHLIDPNPVYDVR 361

Query: 352 RKLLDLVFLGRHGSVTGGSKSGEVGTRGDSESEDENNE 389
           RKLLDLV LGR   +   S  GE     +   ++E N+
Sbjct: 362 RKLLDLVILGRRSLLVNKSNPGETRQGEECGLQNEIND 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433457|ref|XP_002263268.1| PREDICTED: uncharacterized protein LOC100243520 [Vitis vinifera]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/393 (70%), Positives = 319/393 (81%), Gaps = 15/393 (3%)

Query: 7   ILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNS 66
           I++ IL HP  ST +R KTTS QYVASR RDPTFEKLMD YKN +KV+++QDLILAN  +
Sbjct: 6   IIKRILLHPP-STSVRFKTTSVQYVASRARDPTFEKLMDNYKNLLKVVAIQDLILANPKN 64

Query: 67  PPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEA 126
           P +VSL+FLS LSQKLHLNRGA +FLRKYPHIFH+FYDP KS PFCKLT+ AVEISR EA
Sbjct: 65  P-TVSLQFLSNLSQKLHLNRGAASFLRKYPHIFHVFYDPSKSLPFCKLTDAAVEISRLEA 123

Query: 127 EAINACLSLVVERLVRLLSMST-SKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRC 185
            AI   + +VV+RLVRLLSMST +KSLPLRA+FKVWRELGLPDDFEDSVI +NP +F+ C
Sbjct: 124 AAIRGSMPIVVDRLVRLLSMSTVAKSLPLRAIFKVWRELGLPDDFEDSVILQNPHLFKLC 183

Query: 186 AGNEPNIH----------RDFTAAVDNWRVTECCKEDC--KVERMELRYGFKQGFPSGMR 233
            GNEPN H           +  AAV+NWR+ ECCKEDC   V+ +ELR+ FK GFP GMR
Sbjct: 184 DGNEPNTHVLKLVSVVPSGNLRAAVENWRIMECCKEDCGSSVDPLELRFSFKHGFPPGMR 243

Query: 234 LGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVE 293
           LGK+FK +VKEWQRLPYVGPYEEMGE KK+K+G+  LEKRAVAIVHEFLSLTVEK VEVE
Sbjct: 244 LGKNFKAKVKEWQRLPYVGPYEEMGEKKKSKSGIMGLEKRAVAIVHEFLSLTVEKTVEVE 303

Query: 294 KISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRK 353
           KISHFRKWF ID NIRDLFLDHPG+FYLSTKGKRHTVFLREAYERG LI+PNPVYD +RK
Sbjct: 304 KISHFRKWFEIDLNIRDLFLDHPGMFYLSTKGKRHTVFLREAYERGCLIDPNPVYDAKRK 363

Query: 354 LLDLVFLGRHGSVTGGSKSGEVGTRGDSESEDE 386
           LLDLV LGRH   + GS   ++    + + ++E
Sbjct: 364 LLDLVVLGRHRLFSSGSTLQDMDGNEEGKLQEE 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848922|ref|XP_002892342.1| hypothetical protein ARALYDRAFT_887847 [Arabidopsis lyrata subsp. lyrata] gi|297338184|gb|EFH68601.1| hypothetical protein ARALYDRAFT_887847 [Arabidopsis lyrata subsp. lyrata]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/381 (71%), Positives = 314/381 (82%), Gaps = 15/381 (3%)

Query: 7   ILESILKHPTTSTFI--RSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANR 64
           ++ SIL HP   + I  RS TTSAQYVASR RDP FEKLMDKYKN +KVI++QDLILAN 
Sbjct: 5   LMRSILIHPCGGSIINARSTTTSAQYVASRSRDPVFEKLMDKYKNLLKVIAIQDLILANP 64

Query: 65  NS-PPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISR 123
            + PPS+S++FLSRLSQKLHLNRGA +FLRKYPHIFH+ YDPVK++PFC+LT+ A+EISR
Sbjct: 65  TADPPSLSIDFLSRLSQKLHLNRGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVALEISR 124

Query: 124 QEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFR 183
           QEA AI A LSLVV+RLVRLLSMS SKS+PLRAVFKVWRELGLPDDFEDSVI++NP +F+
Sbjct: 125 QEALAITATLSLVVDRLVRLLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFK 184

Query: 184 RCAGNEPNIH-----------RDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGM 232
              G+EPN H            +F AAV+ WRV EC KEDC VER EL++ FK  +P GM
Sbjct: 185 LSDGHEPNTHILELVQEEDKRLEFEAAVEKWRVVECSKEDCCVERTELQFSFKHSYPPGM 244

Query: 233 RLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEV 292
           RL K FK +VKEWQRLPYVGPYE+M   KK ++GV  +EKRAVAI HEFLSLTVEKMVEV
Sbjct: 245 RLSKTFKAKVKEWQRLPYVGPYEDMAGKKKNRSGVMGIEKRAVAIAHEFLSLTVEKMVEV 304

Query: 293 EKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRR 352
           EKISHFRK FGID NIRDLFLDHPG+FY+STKGKRHTVFLREAYERG+LI+PNPVYD RR
Sbjct: 305 EKISHFRKCFGIDLNIRDLFLDHPGMFYMSTKGKRHTVFLREAYERGRLIDPNPVYDARR 364

Query: 353 KLLDLVFLGRHGSVT-GGSKS 372
           KLLDLV LGRH +++  GS S
Sbjct: 365 KLLDLVLLGRHAALSESGSTS 385

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224147834|ref|XP_002336549.1| predicted protein [Populus trichocarpa] gi|222835936|gb|EEE74357.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/354 (77%), Positives = 308/354 (87%), Gaps = 12/354 (3%)

Query: 22  RSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRN-SPPSVSLEFLSRLSQ 80
           RS+TTSAQYVASR RD TFEKLMDKYKN++KVI++QDLIL+N N +PP +SL+FLS+LSQ
Sbjct: 1   RSQTTSAQYVASRARDATFEKLMDKYKNFVKVIAIQDLILSNPNKTPPCISLDFLSKLSQ 60

Query: 81  KLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERL 140
           KLHLNRGA +FLRKYPHIFHIFYDP KSQ FC+LT+TA+EISR+E EA+NA L LVV+RL
Sbjct: 61  KLHLNRGAPSFLRKYPHIFHIFYDPAKSQAFCRLTDTALEISRKEEEAVNASLPLVVDRL 120

Query: 141 VRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIH------- 193
           VRLL MSTSKSLPLRAVFKVWRELGLPDDFEDSVI +NP +FR C GNEP  H       
Sbjct: 121 VRLLFMSTSKSLPLRAVFKVWRELGLPDDFEDSVIVKNPNLFRLCDGNEPRTHVLKLVGE 180

Query: 194 ---RDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPY 250
                FTAAV+NWRVTECC+EDC V+RM++RY FK  +P GMRL K F+ +VKEWQ LPY
Sbjct: 181 FPDNHFTAAVENWRVTECCREDCSVDRMDIRYSFKHVYPPGMRLSKTFRAKVKEWQSLPY 240

Query: 251 VGPYEEMGE-SKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIR 309
           +GPYE++ E  KKTKAG+K LEKRAVAIVHEFLSLTVEKMVEVEKISHFR  FGID NIR
Sbjct: 241 LGPYEDLMEKKKKTKAGLKGLEKRAVAIVHEFLSLTVEKMVEVEKISHFRNCFGIDMNIR 300

Query: 310 DLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRH 363
           DLFLDHPG+FYLSTKGKRHTVFLREAYERG+LI+PNPVYDVRRKLLDLVFLGRH
Sbjct: 301 DLFLDHPGMFYLSTKGKRHTVFLREAYERGRLIDPNPVYDVRRKLLDLVFLGRH 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466181|ref|XP_002264536.1| PREDICTED: uncharacterized protein LOC100261573 [Vitis vinifera]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/377 (73%), Positives = 311/377 (82%), Gaps = 15/377 (3%)

Query: 7   ILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNS 66
           I + IL +P  ST +R KTTS QYVASR RDPTFEKLMD YKN +KVI++QDLILAN  +
Sbjct: 6   IFKRILLYPP-STSVRFKTTSVQYVASRARDPTFEKLMDNYKNLLKVIAIQDLILANPKN 64

Query: 67  PPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEA 126
           P +VSL+FLS LSQKLHLNRGA +FLRKYPHIFH+FYDP KS PFCKLT+ AVEISR EA
Sbjct: 65  P-TVSLQFLSNLSQKLHLNRGAASFLRKYPHIFHVFYDPSKSLPFCKLTDAAVEISRLEA 123

Query: 127 EAINACLSLVVERLVRLLSMST-SKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRC 185
            AI   + +VV+RLVRLLSMST ++SLPLRA+FKVWRELGLPDDFEDSVI +NP +F+ C
Sbjct: 124 AAIRGSMPIVVDRLVRLLSMSTVARSLPLRAIFKVWRELGLPDDFEDSVILQNPHLFKLC 183

Query: 186 AGNEPNIHR----------DFTAAVDNWRVTECCKEDC--KVERMELRYGFKQGFPSGMR 233
            GNEPN H           +  AAV+NWR+ ECCKEDC   V+ +ELR+ FK GFP GMR
Sbjct: 184 DGNEPNTHLLKLVSVIPSVNLRAAVENWRIMECCKEDCGSSVDPLELRFSFKHGFPPGMR 243

Query: 234 LGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVE 293
           LGK+FK +VKEWQRL YVGPYEEMGE KK+K+G+  LEKRAVAIVHEFLSLTVEK VEVE
Sbjct: 244 LGKNFKAKVKEWQRLLYVGPYEEMGEKKKSKSGIMGLEKRAVAIVHEFLSLTVEKTVEVE 303

Query: 294 KISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRK 353
           KISHFRKWFGID NIRDLFLDHPG+FYLSTKGKRHTVFLREAYERG LI+PNPVYD RRK
Sbjct: 304 KISHFRKWFGIDLNIRDLFLDHPGMFYLSTKGKRHTVFLREAYERGCLIDPNPVYDARRK 363

Query: 354 LLDLVFLGRHGSVTGGS 370
           LLDLV LGRHG  +  S
Sbjct: 364 LLDLVVLGRHGLFSSDS 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537736|ref|XP_003537381.1| PREDICTED: uncharacterized protein LOC100808404 [Glycine max]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/387 (70%), Positives = 316/387 (81%), Gaps = 14/387 (3%)

Query: 14  HPTT-STFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSL 72
           HPT  S  +RSKTTSAQYVA+RFRDPTFEKLMD YKN +KVI+VQDLILAN  +P SVS+
Sbjct: 11  HPTRFSMCLRSKTTSAQYVATRFRDPTFEKLMDNYKNLVKVIAVQDLILANPKNP-SVSI 69

Query: 73  EFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINAC 132
           +FLS+LSQKLHLNRGATAFLRK+PHIFHI+YDP K +PFC+LT+ A+++SRQEA AINA 
Sbjct: 70  DFLSKLSQKLHLNRGATAFLRKFPHIFHIYYDPSKLKPFCRLTDAALDVSRQEAVAINAS 129

Query: 133 LSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNI 192
           L  VV RLVR+LSMS S+ +PLRAVFKVW+ELGLPDDFEDSVI+ N  +F+    +EPN 
Sbjct: 130 LPDVVGRLVRILSMSASRMVPLRAVFKVWKELGLPDDFEDSVISANSGVFQLFEAHEPNT 189

Query: 193 H----------RDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRV 242
           H            F AAV++WRV ECCKEDC V+RME+++ FKQG+P GMRL K+FK +V
Sbjct: 190 HLLKLVDGACNNGFRAAVEDWRVVECCKEDCSVDRMEMQFNFKQGYPPGMRLTKNFKAKV 249

Query: 243 KEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWF 302
           KEWQRLPYVGPYE +GE KK+KAG+  LEKRAV+IVHEFLSLTVEKMVEVEKIS FR WF
Sbjct: 250 KEWQRLPYVGPYEVVGEKKKSKAGMMALEKRAVSIVHEFLSLTVEKMVEVEKISQFRNWF 309

Query: 303 GIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGR 362
           GID NIRDLFLDHPGIFYLSTKGKRHTVFLREAYERG LIEPNP+YD RR+LLDLV LGR
Sbjct: 310 GIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIEPNPIYDARRRLLDLVVLGR 369

Query: 363 HGSVTGGSKSGEVGTRGDSESEDENNE 389
            G     SK  +  T G +E+  E N+
Sbjct: 370 RGLPAVNSKFQD--TSGCNETGQEENQ 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221480|ref|NP_172132.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gi|6692684|gb|AAF24818.1|AC007592_11 F12K11.21 [Arabidopsis thaliana] gi|52627099|gb|AAU84676.1| At1g06440 [Arabidopsis thaliana] gi|60543349|gb|AAX22272.1| At1g06440 [Arabidopsis thaliana] gi|110737135|dbj|BAF00518.1| hypothetical protein [Arabidopsis thaliana] gi|332189866|gb|AEE27987.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/392 (68%), Positives = 315/392 (80%), Gaps = 20/392 (5%)

Query: 7   ILESILKHPTTSTFI--RSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANR 64
           ++ S+L HP   + I  RS TTSAQYVASR RDP FEKLMDKYKN +KVI++QDL LAN 
Sbjct: 5   LMRSLLVHPCGGSIINVRSTTTSAQYVASRSRDPVFEKLMDKYKNLLKVIAIQDLTLANP 64

Query: 65  NS-PPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISR 123
            + PPS+S+EFLSRLSQKLHLNRGA +FLRKYPHIFH+ YDPVK++PFC+LT+ A+EISR
Sbjct: 65  TADPPSLSIEFLSRLSQKLHLNRGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVAMEISR 124

Query: 124 QEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFR 183
           QEA AI A LSLVV+RLVRLLSMS SKS+PLRAVFKVWRELGLPDDFEDSVI++NP +F+
Sbjct: 125 QEALAITATLSLVVDRLVRLLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFK 184

Query: 184 RCAGNEPNIH-----------RDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGM 232
              G+E N H            +F AAV+ WRV EC KEDC V+R E+++ FK  +P GM
Sbjct: 185 LSDGHESNTHILELVQEEEKRLEFEAAVEKWRVVECSKEDCSVDRTEIQFSFKHSYPPGM 244

Query: 233 RLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEV 292
           RL K FK +VKEWQRLPYVGPYE+M   KK+++GV  +EKRAVAI HEFL+LTVEKMVEV
Sbjct: 245 RLSKTFKAKVKEWQRLPYVGPYEDMVGKKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEV 304

Query: 293 EKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRR 352
           EKISHFRK FGID NIRDLFLDHPG+FY+STKGKRHTVFLREAYERG+LI+PNPVYD RR
Sbjct: 305 EKISHFRKCFGIDLNIRDLFLDHPGMFYVSTKGKRHTVFLREAYERGRLIDPNPVYDARR 364

Query: 353 KLLDLVFLGRHGSVTGGSKSGEVGTRGDSESE 384
           KLLDLV LGRH +++      E G    SE E
Sbjct: 365 KLLDLVLLGRHAALS------ESGNTSMSEQE 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856032|emb|CAN78615.1| hypothetical protein VITISV_003657 [Vitis vinifera]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/377 (72%), Positives = 309/377 (81%), Gaps = 15/377 (3%)

Query: 7   ILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNS 66
           I++ IL HP  ST +R KTTS QYVASR RDPTFEKLMD YKN +KV+++QDLILAN  +
Sbjct: 6   IIKRILLHPP-STSVRFKTTSVQYVASRARDPTFEKLMDNYKNLLKVVAIQDLILANPKN 64

Query: 67  PPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEA 126
           P +VS++FLS LSQKLHLNRGA +FLRKYPHIF +FYDP KS PFCKLT+ AVEISR EA
Sbjct: 65  P-TVSVQFLSNLSQKLHLNRGAASFLRKYPHIFDVFYDPSKSLPFCKLTDAAVEISRLEA 123

Query: 127 EAINACLSLVVERLVRLLSMST-SKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRC 185
            AI   + +VV+RLVRLLSMST +KSLPLRA+FKVWRELGLPDDFEDSVI +NP +F+ C
Sbjct: 124 AAIRGSMPIVVDRLVRLLSMSTVAKSLPLRAIFKVWRELGLPDDFEDSVILQNPHLFKLC 183

Query: 186 AGNEPNIH----------RDFTAAVDNWRVTECCKEDC--KVERMELRYGFKQGFPSGMR 233
            GNEPN H           +  AAV+NWR+ ECCKEDC   V+  ELR+ FK GFP GMR
Sbjct: 184 DGNEPNTHVLKLVSVVPSGNLRAAVENWRIMECCKEDCGSSVDPFELRFSFKHGFPPGMR 243

Query: 234 LGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVE 293
           LGK+FK +VKEWQ LPYVGPYEEMGE KK+K+G+  LEKRAVAIVHEFLSLTVEK VEVE
Sbjct: 244 LGKNFKAKVKEWQGLPYVGPYEEMGEKKKSKSGIMGLEKRAVAIVHEFLSLTVEKTVEVE 303

Query: 294 KISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRK 353
           KISHFRKWF ID NIRDLFLDHPG+FYLSTKGKRHTVFLREAYERG LI+PNPVYD +RK
Sbjct: 304 KISHFRKWFEIDLNIRDLFLDHPGMFYLSTKGKRHTVFLREAYERGCLIDPNPVYDAKRK 363

Query: 354 LLDLVFLGRHGSVTGGS 370
           LLDLV LGRH   + GS
Sbjct: 364 LLDLVVLGRHRLFSSGS 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205208|emb|CBI17267.3| unnamed protein product [Vitis vinifera]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 271/383 (70%), Positives = 311/383 (81%), Gaps = 12/383 (3%)

Query: 7   ILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNS 66
           I++ IL HP  ST +R KTTS QYVASR RDPTFEKLMD YKN +KV+++QDLILAN  +
Sbjct: 6   IIKRILLHPP-STSVRFKTTSVQYVASRARDPTFEKLMDNYKNLLKVVAIQDLILANPKN 64

Query: 67  PPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEA 126
           P +VSL+FLS LSQKLHLNRGA +FLRKYPHIFH+FYDP KS PFCKLT+ AVEISR EA
Sbjct: 65  P-TVSLQFLSNLSQKLHLNRGAASFLRKYPHIFHVFYDPSKSLPFCKLTDAAVEISRLEA 123

Query: 127 EAINACLSLVVERLVRLLSMST-SKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRC 185
            AI   + +VV+RLVRLLSMST +KSLPLRA+FKVWRELGLPDDFEDSVI +NP +F+ C
Sbjct: 124 AAIRGSMPIVVDRLVRLLSMSTVAKSLPLRAIFKVWRELGLPDDFEDSVILQNPHLFKLC 183

Query: 186 AGNEPNIHRDFTAAVDNWRVTECCKEDC--KVERMELRYGFKQGFPSGMRLGKDFKGRVK 243
            GNEPN H     +V       CCKEDC   V+ +ELR+ FK GFP GMRLGK+FK +VK
Sbjct: 184 DGNEPNTHVLKLVSV-------CCKEDCGSSVDPLELRFSFKHGFPPGMRLGKNFKAKVK 236

Query: 244 EWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFG 303
           EWQRLPYVGPYEEMGE KK+K+G+  LEKRAVAIVHEFLSLTVEK VEVEKISHFRKWF 
Sbjct: 237 EWQRLPYVGPYEEMGEKKKSKSGIMGLEKRAVAIVHEFLSLTVEKTVEVEKISHFRKWFE 296

Query: 304 IDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRH 363
           ID NIRDLFLDHPG+FYLSTKGKRHTVFLREAYERG LI+PNPVYD +RKLLDLV LGRH
Sbjct: 297 IDLNIRDLFLDHPGMFYLSTKGKRHTVFLREAYERGCLIDPNPVYDAKRKLLDLVVLGRH 356

Query: 364 GSVTGGSKSGEVGTRGDSESEDE 386
              + GS   ++    + + ++E
Sbjct: 357 RLFSSGSTLQDMDGNEEGKLQEE 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065395|ref|XP_002301796.1| predicted protein [Populus trichocarpa] gi|222843522|gb|EEE81069.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/348 (76%), Positives = 300/348 (86%), Gaps = 12/348 (3%)

Query: 22  RSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRN-SPPSVSLEFLSRLSQ 80
           RSKTTSAQYVASR RD TFEKLMDKYKN++KVI++QDLIL+N N +PP +SL+FLS+LSQ
Sbjct: 1   RSKTTSAQYVASRARDATFEKLMDKYKNFVKVIAIQDLILSNPNKTPPCISLDFLSKLSQ 60

Query: 81  KLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERL 140
           KLHLNRGA +FLRKYPHIFHIFYDP KSQ FC+LT+TA+EISR+E EA+NA L LVV+RL
Sbjct: 61  KLHLNRGAPSFLRKYPHIFHIFYDPAKSQAFCRLTDTALEISRKEEEAVNASLPLVVDRL 120

Query: 141 VRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIH------- 193
           VRLL MSTSKSLPLRAVFKVWRELGLPDDFEDSVI +NP +FR C GNEP  H       
Sbjct: 121 VRLLFMSTSKSLPLRAVFKVWRELGLPDDFEDSVIVKNPNLFRLCDGNEPRTHVLKLVGE 180

Query: 194 ---RDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPY 250
                FTAAV+NWRVTECC+EDC V+RM++RY FK  +P GMRL K F+ + KEWQ LPY
Sbjct: 181 FPDNHFTAAVENWRVTECCREDCSVDRMDMRYSFKHVYPPGMRLSKTFRAKAKEWQSLPY 240

Query: 251 VGPYEEMGE-SKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIR 309
           +GPYE++ E  KKTKAG+K LEKRAVAIVHEFLSLTVEKMVEVEKISHFR  FGID NIR
Sbjct: 241 LGPYEDLMEKKKKTKAGLKGLEKRAVAIVHEFLSLTVEKMVEVEKISHFRNCFGIDMNIR 300

Query: 310 DLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDL 357
           DLFLDHPG+FYLSTKGKRHTVFLREAYERG+LI+PNPVYDVRRKLL L
Sbjct: 301 DLFLDHPGMFYLSTKGKRHTVFLREAYERGRLIDPNPVYDVRRKLLIL 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2009230	390	AT1G06440 [Arabidopsis thalian	0.940	0.938	0.671	8.8e-134
TAIR|locus:504955534	409	RPD1 "ROOT PRIMORDIUM DEFECTIV	0.863	0.821	0.372	4.9e-53
TAIR|locus:4515103321	528	WTF1 "what's this factor?" [Ar	0.943	0.695	0.275	3.6e-33
TAIR|locus:2042561	415	AT2G31290 [Arabidopsis thalian	0.799	0.749	0.278	4.2e-31
TAIR|locus:2012981	470	AT1G71850 "AT1G71850" [Arabido	0.976	0.808	0.254	9.8e-29
TAIR|locus:2064940	387	WTF9 "AT2G39120" [Arabidopsis	0.879	0.883	0.291	2.2e-27
TAIR|locus:2207380	413	AT1G79120 [Arabidopsis thalian	0.794	0.748	0.279	9.7e-25
TAIR|locus:2166305	494	emb1692 "embryo defective 1692	0.871	0.686	0.246	1.4e-21
TAIR|locus:2138738	395	AT4G08940 [Arabidopsis thalian	0.817	0.805	0.249	2.1e-14

TAIR|locus:2009230 AT1G06440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
 Identities = 256/381 (67%), Positives = 301/381 (79%)

Query:     7 ILESILKHPTTSTFI--RSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANR 64
             ++ S+L HP   + I  RS TTSAQYVASR RDP FEKLMDKYKN +KVI++QDL LAN 
Sbjct:     5 LMRSLLVHPCGGSIINVRSTTTSAQYVASRSRDPVFEKLMDKYKNLLKVIAIQDLTLANP 64

Query:    65 NS-PPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISR 123
              + PPS+S+EFLSRLSQKLHLNRGA +FLRKYPHIFH+ YDPVK++PFC+LT+ A+EISR
Sbjct:    65 TADPPSLSIEFLSRLSQKLHLNRGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVAMEISR 124

Query:   124 QEAEAINACXXXXXXXXXXXXXMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFR 183
             QEA AI A              MS SKS+PLRAVFKVWRELGLPDDFEDSVI++NP +F+
Sbjct:   125 QEALAITATLSLVVDRLVRLLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFK 184

Query:   184 RCAGNEPNIH----------R-DFTAAVDNWRVTECCKEDCKVERMELRYGFKQGFPSGM 232
                G+E N H          R +F AAV+ WRV EC KEDC V+R E+++ FK  +P GM
Sbjct:   185 LSDGHESNTHILELVQEEEKRLEFEAAVEKWRVVECSKEDCSVDRTEIQFSFKHSYPPGM 244

Query:   233 RLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEV 292
             RL K FK +VKEWQRLPYVGPYE+M   KK+++GV  +EKRAVAI HEFL+LTVEKMVEV
Sbjct:   245 RLSKTFKAKVKEWQRLPYVGPYEDMVGKKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEV 304

Query:   293 EKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRR 352
             EKISHFRK FGID NIRDLFLDHPG+FY+STKGKRHTVFLREAYERG+LI+PNPVYD RR
Sbjct:   305 EKISHFRKCFGIDLNIRDLFLDHPGMFYVSTKGKRHTVFLREAYERGRLIDPNPVYDARR 364

Query:   353 KLLDLVFLGRHGSVT-GGSKS 372
             KLLDLV LGRH +++  G+ S
Sbjct:   365 KLLDLVLLGRHAALSESGNTS 385

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:504955534 RPD1 "ROOT PRIMORDIUM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 131/352 (37%), Positives = 194/352 (55%)

Query:    23 SKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKL 82
             S++T+      R RD  ++  M+  K   KV+    LIL+  N   ++SL  L  L+++L
Sbjct:    35 SQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISL--LDTLARRL 92

Query:    83 HLN---RGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACXXXXXXX 139
              L        AFL K+PH+F I+  PV+   +C+LT  A++  R E EA+          
Sbjct:    93 GLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTR 152

Query:   140 XXXXXXMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPN------IH 193
                   MS +  + L  V     E GLP+DFE SVI ++P+ FR   G E        + 
Sbjct:   153 LRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVE 212

Query:   194 RDFTAAVDNW-RVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVG 252
             +D   ++    RV E       ++  ++R+ F   FP G ++GK F+  V +WQRLPY  
Sbjct:   213 KDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWS 272

Query:   253 PYEEM-GESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDL 311
             PYE++ G   ++     RLEKR+VA +HE LSLTVEK + +E+I+HFR    +   +++ 
Sbjct:   273 PYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEF 332

Query:   312 FLDHPGIFYLSTKG---KRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFL 360
              L H GIFY+ST+G   K HTVFLRE Y+RG+L+EPN VY  RR+L +LV +
Sbjct:   333 LLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLM 384

GO:0009507 "chloroplast" evidence=ISM

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

TAIR|locus:4515103321 WTF1 "what's this factor?" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.6e-33, P = 3.6e-33
 Identities = 106/385 (27%), Positives = 178/385 (46%)

Query:    16 TTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFL 75
             +TS   R      +    R ++ TF+ ++ + K    V++++ ++++  +    +SL  L
Sbjct:    60 STSRKTRVVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDR--MMSLRGL 117

Query:    76 SRLSQKLHLN--RGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACX 133
              +  + L L   R   A LRKYP +F I  +   S  F K+T  A  +   E    N   
Sbjct:   118 GKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAYSLRF-KMTSEAERLYLDEMRIRNELE 176

Query:   134 XXXXXXXXXXXXMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRC-AGNEPNI 192
                         MS  K + L  +  +  +LGLP +F D++  R P+ FR       P +
Sbjct:   177 DVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPAL 236

Query:   193 ---HRDFTAAVDNWRVTECCKEDCKVERMELRYGFKQGF-----PSGMRLGKDFKGRVKE 244
                H D   AV    ++E      + E   L       F     P G+ L K    ++ +
Sbjct:   237 ELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQ 296

Query:   245 WQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGI 304
             ++ + Y+ PY++       ++G    EK A  ++HE LSLT EK   V+ ++HFR+ F  
Sbjct:   297 FRDMQYISPYKDFSH---LRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRF 353

Query:   305 DFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRHG 364
                +R + + HP +FY+S KG+R +VFLREAY   +LI+ +P+  V+ K+  LV + R  
Sbjct:   354 SQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFP 413

Query:   365 SVTGGSKSGEVGTRGDSESEDENNE 389
                GG +  E G   + +  D + E
Sbjct:   414 R-RGGPRKDEEGREVEIDGSDADGE 437

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2042561 AT2G31290 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 92/330 (27%), Positives = 161/330 (48%)

Query:    36 RDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGATAFLRKY 95
             +DP  E  + + K +I    ++++IL   N   S+  +FL +  + L L   A  +L+KY
Sbjct:    30 KDPDLESALSRNKRWIVNSRLKNIILRCPNQVASI--KFLQKKFKTLDLQGKALNWLKKY 87

Query:    96 PHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACXXXXXXXXXXXXXMSTSKSLPLR 155
             P  FH++ +    + +C+LT+  + +  +E    +               +S ++ L + 
Sbjct:    88 PCCFHVYLE--NDEYYCRLTKPMMTLVEEEELVKDTQEPVLADRLAKLLMLSVNQRLNVV 145

Query:   156 AVFKVWRELGLPDDFEDSVIARNPKIFR--RCAGNEPNIHRDFTAAVDNWRVT--ECCKE 211
              + +  R  G PDD+   ++ +   +FR    +G + ++  +         V+  E   +
Sbjct:   146 KLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELLLWKPELAVSAVEAAAK 205

Query:   212 DCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLE 271
              C  E       F    PS     K ++ R  E+   PY+ PYE+ G+  +   G K  E
Sbjct:   206 KCGSEP-----SFSCSLPSTWT--KPWE-RFMEFNAFPYISPYEDHGDLVE---GSKESE 254

Query:   272 KRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVF 331
             KR+V +VHE LSLT+ K + + K+SHF++ FG+   +  + L HPGIFY+  K + HTV 
Sbjct:   255 KRSVGLVHELLSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVHTVI 314

Query:   332 LREAYERGQLIEPNPVYDVRRKLLDLVFLG 361
             LRE Y   +LI  +P+  V+ K  +L+  G
Sbjct:   315 LREGYNGSELIHKDPLVVVKDKFGELMQQG 344

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2012981 AT1G71850 "AT1G71850" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.8e-29, P = 9.8e-29
 Identities = 103/405 (25%), Positives = 182/405 (44%)

Query:     1 MRSKARILESILKHPTTSTFIRSKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLI 60
             M+S  R + SI +H    TF  + T++ +      RD   +  +++ KN   ++S++DLI
Sbjct:     1 MKSIFRSI-SIRRHSGHRTF--ADTSAVEDTYKFVRDRGLDHAVEREKNLRPLLSIKDLI 57

Query:    61 LANRNSPP-SVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDP-VKSQPFCKLTETA 118
                R+ P  SV +  ++     L +      F+R +P +F  F    +   P   LT   
Sbjct:    58 ---RSEPAKSVPISVITSQKDSLRVPLRPIEFIRSFPSVFQEFLPGGIGIHPHISLTPEI 114

Query:   119 VEISRQEAEAINACXXXXXXXXXXXXXMSTSK--SLPLRAVFKVWRELGLPDDFEDSVIA 176
             +     E     +              +  ++   +PL  +  +  +LGLP D+ ++++ 
Sbjct:   115 LNHDADEQLVYGSETYKQGLADRLLKLLMINRINKIPLEILDLLKWDLGLPKDYVETMVP 174

Query:   177 RNPKIFRRCAGNEPNIHRDFTAAV-DNWRVTECCKEDCKVERM-ELRYG----FKQGFPS 230
               P  FR           +       N       ++  +  R  E   G    F   F +
Sbjct:   175 EFPDYFRVIKSKLRGCSGELELVCWSNEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSN 234

Query:   231 GMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMV 290
             G  + K  K  + +WQ+LPY+ PYE       T       +K A A++HE ++L V K V
Sbjct:   235 GFVVDKKMKKWIDDWQKLPYISPYENALHLSATS---DESDKWAAAVLHEIMNLFVSKKV 291

Query:   291 EVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDV 350
             E + I H  ++ G+    + +  +HPGIFYLS+K + HTV LR+ Y+RG LIE N +   
Sbjct:   292 EKDAILHLGEFMGLRSRFKRVLHNHPGIFYLSSKLRTHTVVLRDGYKRGMLIESNELVTS 351

Query:   351 RRKLLDLVFLGR--HGSVTGGSKSGEVG-TRG---DSESEDENNE 389
             R + + L+   +  + +V+  SK  + G   G   D++++ EN++
Sbjct:   352 RNRYMKLMNTVKKDNKAVSSSSKKEDKGKVEGEVCDTDAKAENDD 396

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2064940 WTF9 "AT2G39120" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 105/360 (29%), Positives = 158/360 (43%)

Query:    10 SILKHPTT----STFIRSKTTSAQYVASRFRDPTFEKLMDKYKN-YIK-VISVQDLILAN 63
             SI +H  T     T +  K T         RDP F+ +    ++  +K V+S+++ I+  
Sbjct:     3 SIRRHAKTVASSCTNLTQKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQE 62

Query:    64 RNSPPSVSLEFLSRLSQKLHLNRGATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISR 123
              N    + +  +S+ +++  ++     FLRK+P IF  F  P  + P+ +LT  A E+ R
Sbjct:    63 PNR--CIPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEYNLPWFRLTPEATELDR 120

Query:   124 QEAEAINACXXXXXXXXXXXXXMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFR 183
             QE                    MS    LPL  V  +   LGLPDD+           FR
Sbjct:   121 QERVVYQTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFR 180

Query:   184 RCAGNE--PNIHRDFTAAVDNWRVTECCKEDCKVERMELRYGFKQG--FPS-GMRLGKDF 238
                  +    +  D+        V +  K   K  R E+     +   FPS G RL    
Sbjct:   181 FVDMEDGVKGLAVDYNGGDKVLSVLQ--KNAMKKRRGEVSLEEIEFPLFPSKGCRLRVKI 238

Query:   239 KGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHF 298
             +  + E+Q+LPYV PY++        + +   EKR V  +HE L L VE   E +K+   
Sbjct:   239 EDWLMEFQKLPYVSPYDDYS-CLDPSSDIA--EKRVVGFLHELLCLFVEHSAERKKLLCL 295

Query:   299 RKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLV 358
             +K FG+   +   F  HP IFYLS K K  T  LRE Y     +E +PV  VR+K + L+
Sbjct:   296 KKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLM 355

GO:0005739 "mitochondrion" evidence=IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0017004 "cytochrome complex assembly" evidence=IMP

TAIR|locus:2207380 AT1G79120 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 94/336 (27%), Positives = 154/336 (45%)

Query:    29 QYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGA 88
             Q V  R  D   +K +D  K    ++ ++ +I A ++   S+ L  L +    +H     
Sbjct:    59 QKVYHRVHD--LDKAIDLNKKPSLILQLKSIIQAQKHG--SLLLRDLEKHVGFVH-KWNL 113

Query:    89 TAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACXXXXXXXXXXXXXMST 148
              A + KYP IF++     K  PF  LTE A +I+ +E+EA  +              MS 
Sbjct:   114 MAAIEKYPTIFYVGGGH-KEPPFVMLTEKAKKIAAEESEATESMEPILVNNLRKLLMMSV 172

Query:   149 SKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFR-RCAGNEPNI---HRDFTAAVDNWR 204
                +PL  V  +   +GLP DF+ ++I +  + F  +    + N+   + D + A+   R
Sbjct:   173 DCRVPLEKVEFIQSAMGLPQDFKSTLIPKYTEFFSLKVINGKVNLVLENWDSSLAITA-R 231

Query:   205 VTECCKE-------DCKVERMEL------RYGFKQGFPSGMRLGKDFKGRVKEWQRLPYV 251
                  +E       D K  R+        R  FK  FP G R    +    ++WQ++ + 
Sbjct:   232 EDRLSREGFSESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEFEKWQKMEFP 291

Query:   252 GPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDL 311
              PY     +++  A   +  KR VA++HE LSLT+EK V   ++  F   + +   +   
Sbjct:   292 SPYLN---ARRFDAADPKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYLLPSRLILC 348

Query:   312 FLDHPGIFYLSTKGKRHTVFLREAYERGQLIEPNPV 347
              + H GIFY++ KG R TVFL++AY    LIE  P+
Sbjct:   349 LIKHQGIFYITNKGARGTVFLKDAYAGSNLIEKCPL 384

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2166305 emb1692 "embryo defective 1692" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 95/385 (24%), Positives = 170/385 (44%)

Query:    36 RDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNR--GATAFLR 93
             R P+ ++ + K +N ++ +   + +L ++     + +E L +    L +       + +R
Sbjct:    61 RSPSLDRHVVK-QNRVRFVQKLNTLLLSKPKH-YIPIEILYKCRSYLCIENPLAILSMIR 118

Query:    94 KYPHIFHIFYDPVKSQPF---------C-KLTETAVEISRQEAEAINACXXXXXXXXXXX 143
             +YP IF +F  P    P          C +LT  A  ++ QE    +             
Sbjct:   119 RYPTIFELFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKL 178

Query:   144 XXMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFR----------RCAGNEPNIH 193
               +S+ + L L  +  +  + G P +F   +    P  F+              ++P + 
Sbjct:   179 LMLSSHRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRALELVSSDPELA 238

Query:   194 RDFTAA-VDNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVG 252
                 +  VD   + +      K +R+ LR         G+ L +  +G + +++  P V 
Sbjct:   239 NQMPSPEVDRGLIVD---RPLKFKRLNLR--------RGLNLKRRHQGFLIKFRESPDVC 287

Query:   253 PYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLF 312
             PY+ M         ++  EKRA A+V E L LTVEK   ++ ++HFRK F +   +RDL 
Sbjct:   288 PYK-MSSDYLASESIEA-EKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSLPNKLRDLI 345

Query:   313 LDHPGIFYLSTKGKRHTVFLREAY-ERGQLIEPNPVYDVRRKLLDLVFLG-------RHG 364
             + HP +FY+S KG R +VFL EAY + G L++ +    +R +L+DL+  G       R  
Sbjct:   346 VRHPELFYVSIKGMRDSVFLVEAYNDNGDLLDKDERLVIRERLIDLIQEGKRIRRERRRK 405

Query:   365 SVTGGSKSGEVGTRGDSESEDENNE 389
               T G KS E   + D   +D +++
Sbjct:   406 GATLGDKSVEEKRKDDETIDDYDSD 430

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2138738 AT4G08940 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 85/341 (24%), Positives = 147/341 (43%)

Query:    23 SKTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKL 82
             ++T S Q+ +++   P  E L+ +  ++  +I  ++ I  ++     + L+   +L ++L
Sbjct:    56 ARTKSIQHESTKL--PHLESLVSRDAHFRFLIRSKEFI--SKQPERILRLDDAGKLYREL 111

Query:    83 HLNRG--ATAFLRKYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACXXXXXXXX 140
                RG   T F+ K+P IF   Y     + +   TE   ++  +E   + +         
Sbjct:   112 GFPRGRKVTKFIPKHPLIFQT-YRHSDGKIWLGFTEFMEDLLDEEKGLMESMELDRVNCV 170

Query:   141 XXXXXMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAV 200
                  M+  K + L  +       G+P+DF D V A+ P  FR   G + N   +     
Sbjct:   171 RKLLMMTKDKRILLSKIHHTRLLFGIPEDFRDRV-AKYPDYFRVVTGGDGNRVLELVNWD 229

Query:   201 DNWRVTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRL------PYVGPY 254
              N  V+E  +    ++  + +  FK  FP  ++ GK+ +   K+ ++L      P V PY
Sbjct:   230 TNLAVSEL-ERLFMIDEDKAKRVFK--FP--VKHGKELELEEKDTRKLNLLNTFPLVSPY 284

Query:   255 EEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLD 314
              +     K        EK  V IVHEFL+LT+EK   +  I  F+  F +      +   
Sbjct:   285 SD---GWKLDVWSLEAEKYRVGIVHEFLNLTLEKRASIHHIVEFKDEFSLTRQTYQMLKK 341

Query:   315 HPGIFYLSTKGKRHTVFLREAY-ERGQLIEPNPVYDVRRKL 354
                 FYL+      TVFL++AY E G L+  +P      KL
Sbjct:   342 QSMSFYLAGTEMNWTVFLKDAYDENGVLVSKDPQVVFNEKL 382


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      389       376   0.00088  117 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  251 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.70u 0.17s 28.87t   Elapsed:  00:00:02
  Total cpu time:  28.70u 0.17s 28.87t   Elapsed:  00:00:02
  Start:  Fri May 10 16:26:39 2013   End:  Fri May 10 16:26:41 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam11955	332	pfam11955, PORR, Plant organelle RNA recognition d	1e-125

>gnl|CDD|221338 pfam11955, PORR, Plant organelle RNA recognition domain

 Score =  365 bits (938), Expect = e-125
 Identities = 142/341 (41%), Positives = 206/341 (60%), Gaps = 20/341 (5%)

Query: 34  RFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLNRGATAFLR 93
             RDP  +K +++ K    V+ ++DL+L+  +   S+ L  LS+L ++L L RGA AFLR
Sbjct: 1   WVRDPALDKAVEREKRLRLVLRLKDLLLSQPD--HSLPLRDLSKLRRQLGLPRGALAFLR 58

Query: 94  KYPHIFHIFYDPVKSQPFCKLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLP 153
           KYP IF +F  P  S    +LT  A ++  +EA  + +    +V+RL +LL MS  + LP
Sbjct: 59  KYPSIFELFRHPSDSVLCVRLTPKAEDLLAEEARLLESSEPDLVDRLRKLLMMSKDRRLP 118

Query: 154 LRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPN------IHRD---FTAAVDNWR 204
           L  +  + R+LGLPDDF DS++ + P  FR    +E        +  D     +A++  R
Sbjct: 119 LEKLAHLRRDLGLPDDFRDSLVPKYPDYFR--LVDEDGGDGLELVSWDPELAVSALEKRR 176

Query: 205 VTECCKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTK 264
                 ED   +R++ R+ F   FP G +L K F+ +++EWQ+LPY+ PYE+        
Sbjct: 177 E----IEDRGGDRVDRRFAFPVKFPPGFKLRKKFREKLEEWQKLPYISPYEDASHLD--- 229

Query: 265 AGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTK 324
            G    EKRAVA++HE LSLTVEK  EV+ ++HFRK FG+   +R + L HPGIFYLSTK
Sbjct: 230 PGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKLRKVLLRHPGIFYLSTK 289

Query: 325 GKRHTVFLREAYERGQLIEPNPVYDVRRKLLDLVFLGRHGS 365
           GKRHTVFLREAY+RG+L+E +P+   R KLL+L+  G+   
Sbjct: 290 GKRHTVFLREAYDRGELVEKDPLVLAREKLLELMLEGKRER 330

This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	100.0
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	98.67

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=100.00  E-value=1.3e-108  Score=817.50  Aligned_cols=323  Identities=41%  Similarity=0.718  Sum_probs=299.3

Q ss_pred             hcCChhHHHHHhhhcchhHHHHHHHHHhcCCCCCCCccHHHHHhhcccccCc-ccHHHHHhhCCcceEEecCCCCCCCcc
Q 044902           34 RFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLHLN-RGATAFLRKYPHIFHIFYDPVKSQPFC  112 (389)
Q Consensus        34 r~rD~~lD~~i~~~k~lk~vl~lk~lI~s~P~~~~~~~l~~l~k~~~~Lgl~-~~~~~FlrkyP~iF~~~~~~~~~~p~~  112 (389)
                      ++||++||++|+++|+++++++|+++|+++|+  +++|++.+++++++|||+ +++++||+|||+||++|.++..++|||
T Consensus         1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~--~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~   78 (335)
T PF11955_consen    1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPS--HSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWF   78 (335)
T ss_pred             CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCC--CcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceE
Confidence            46999999999999999999999999999999  999999999999999995 899999999999999999988999999


Q ss_pred             cCcHHHHHHHHHHHHHHHHchHHHHHHHHHHhcccCCCccchHHHHHHHHhcCCCcccchhccccCCCceEEecCCCCCc
Q 044902          113 KLTETAVEISRQEAEAINACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNI  192 (389)
Q Consensus       113 rLT~~a~~L~~eE~~v~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frlv~~~~~~~  192 (389)
                      +||++|++|++||++|++++++++|++|+||||||.+++|||++|++++||||||+||++++|++|||+|+||+..++..
T Consensus        79 ~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~  158 (335)
T PF11955_consen   79 RLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGR  158 (335)
T ss_pred             EeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999444333


Q ss_pred             cchhhhhhcccchhhhhc---c-------ccccccccccccccccCCCCcccchhHHHHHHhhhcCCCCCCCCCcCcccc
Q 044902          193 HRDFTAAVDNWRVTECCK---E-------DCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKK  262 (389)
Q Consensus       193 ~~~~~~~v~~w~~~e~~~---~-------~~~v~~~~~~~aF~~~fp~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~~~~  262 (389)
                      .    ..+++|++..+..   +       +........+++||++||+||++++++++|+++||+|||+|||+|+++.  
T Consensus       159 ~----LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l--  232 (335)
T PF11955_consen  159 Y----LELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHL--  232 (335)
T ss_pred             E----EEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCC--
Confidence            3    2356777654421   0       1123345678999999999999999999999999999999999999764  


Q ss_pred             cccCchhhhhHHHHHHHHHhhccchhhhhhhHHHhhHHhhCCcHHHHHHHhhCCCcEEEeeeCCeeeEEEeecccCCCcc
Q 044902          263 TKAGVKRLEKRAVAIVHEFLSLTVEKMVEVEKISHFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGQLI  342 (389)
Q Consensus       263 ~~~~s~e~EKRaVaVlHELLSLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgIFYvS~Kg~~~TVfLREAY~~g~Li  342 (389)
                       ++||+++|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+||
T Consensus       233 -~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Li  311 (335)
T PF11955_consen  233 -DPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELI  311 (335)
T ss_pred             -CCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCC
Confidence             4789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHcccCCC
Q 044902          343 EPNPVYDVRRKLLDLVFLGRHGS  365 (389)
Q Consensus       343 ek~Pl~~ir~K~~~Lm~~grr~~  365 (389)
                      |||||+.+|+||++||..|++..
T Consensus       312 ek~Pl~~~r~k~~~Lm~~~~~~~  334 (335)
T PF11955_consen  312 EKHPLVVIREKFLELMQEGRRKR  334 (335)
T ss_pred             CCCchHHHHHHHHHHHhhccccc
Confidence            99999999999999999998753

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=98.67  E-value=1.3e-07  Score=95.16  Aligned_cols=140  Identities=24%  Similarity=0.331  Sum_probs=104.7

Q ss_pred             HHHchHHHHHHHHHHhcccCCCccchHHHHHHHHhcCCCcccchhccccCCCceEEecCCCCCccchhhhhhcccchhhh
Q 044902          129 INACLSLVVERLVRLLSMSTSKSLPLRAVFKVWRELGLPDDFEDSVIARNPKIFRRCAGNEPNIHRDFTAAVDNWRVTEC  208 (389)
Q Consensus       129 ~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frlv~~~~~~~~~~~~~~v~~w~~~e~  208 (389)
                      -.+.....|.+|+.+|--++++.||++.+...+..|||+.-=..+++.+||..|.+...+.....     ++        
T Consensus        12 ~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~-----~~--------   78 (335)
T PF11955_consen   12 EREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVP-----WF--------   78 (335)
T ss_pred             HhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCc-----eE--------
Confidence            34445688999999999999999999999999999999533335789999999999874221110     01        


Q ss_pred             hccccccccccccccccccCCCCcccchhHHHHHHhhhcCCCCCCCCCcCcccccccCchhhhhHHHHHHHHHhhccchh
Q 044902          209 CKEDCKVERMELRYGFKQGFPSGMRLGKDFKGRVKEWQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAIVHEFLSLTVEK  288 (389)
Q Consensus       209 ~~~~~~v~~~~~~~aF~~~fp~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~~~~~~~~s~e~EKRaVaVlHELLSLTveK  288 (389)
                                              ++.....+-+.            .  ..    ..-.+.|--+|..+.-||.|+..+
T Consensus        79 ------------------------~LT~~a~~L~~------------e--E~----~~~~~~e~~~v~rL~KLLMMS~~~  116 (335)
T PF11955_consen   79 ------------------------RLTPEAEDLLR------------E--ER----RVREEMEPDLVERLRKLLMMSKDR  116 (335)
T ss_pred             ------------------------EeCHHHHHHHH------------H--HH----HHHHhChHHHHHHHHHHhccCCCC
Confidence                                    00000000000            0  00    012356788899999999999999


Q ss_pred             hhhhhHHHhhHHhhCCcHHHHHH-HhhCCCcEEEee
Q 044902          289 MVEVEKISHFRKWFGIDFNIRDL-FLDHPGIFYLST  323 (389)
Q Consensus       289 r~~~~~L~~fr~efgLp~k~~~~-l~rHPgIFYvS~  323 (389)
                      ++.+++|.|++.+||||..|..- +-+||+.|=|..
T Consensus       117 rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~  152 (335)
T PF11955_consen  117 RLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD  152 (335)
T ss_pred             cccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence            99999999999999999999986 699999999987

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 6e-12
 Identities = 76/410 (18%), Positives = 129/410 (31%), Gaps = 99/410 (24%)

Query: 24  KTTSAQYVASRFRDPTFEKLMDKYKNYIKVISVQDLILANRNSPPSVSLEFLSRLSQKLH 83
           KT  A  V         +  MD    ++ +         N NSP +V LE L +L  ++ 
Sbjct: 163 KTWVALDVC---LSYKVQCKMDFKIFWLNL--------KNCNSPETV-LEMLQKLLYQID 210

Query: 84  LNRGATA-FLRKYPHIFHIFYDPVKSQPFCKLTETAVEISR--QEAEAINA----CLSLV 136
            N  + +          H     ++     K  E  + +    Q A+A NA    C  L+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 137 VER---LVRLLSMSTSKSLPLRAVFKVWRELGL-PDDFEDSVIARNPKIFRRCAGNEPN- 191
             R   +   LS +T+  + L         + L PD+ +         +  +     P  
Sbjct: 271 TTRFKQVTDFLSAATTTHISL-----DHHSMTLTPDEVKS--------LLLKYLDCRPQD 317

Query: 192 -------IH-----------RDFTAAVDNWRVTECCK-----EDC--KVERMELRYGFKQ 226
                   +           RD  A  DNW+   C K     E     +E  E R  F +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 227 G--FPSGMRLGKDFKGRVKE------WQRLPYVGPYEEMGESKKTKAGVKRLEKRAVAI- 277
              FP            +        W  +        + +  K     K+ ++  ++I 
Sbjct: 378 LSVFP------PSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 278 -VHEFLSLTVEKMVEVEK--ISHFRKWFGIDFNIRDLFLDHP-GIFYLSTKGKRHTVFLR 333
            ++  L + +E    + +  + H+      D +  DL   +    FY S  G  H   L+
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSD--DLIPPYLDQYFY-SHIG-HH---LK 482

Query: 334 EAYERGQLIEPNPVYDVRRKLLDLVFLG---RHGSVTGGSKSGEVGTRGD 380
              E  + +        R   LD  FL    RH S    +    + T   
Sbjct: 483 NI-EHPERMT-----LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00