Citrus Sinensis ID: 044926
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 569 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FFE6 | 552 | Probable acyl-activating | yes | no | 0.964 | 0.994 | 0.665 | 0.0 | |
| Q9FFE9 | 550 | Probable acyl-activating | no | no | 0.959 | 0.992 | 0.662 | 0.0 | |
| Q9LQS1 | 544 | Probable acyl-activating | no | no | 0.954 | 0.998 | 0.648 | 0.0 | |
| Q9LPK6 | 550 | Probable acyl-activating | no | no | 0.956 | 0.989 | 0.610 | 0.0 | |
| O80658 | 545 | Probable acyl-activating | no | no | 0.952 | 0.994 | 0.606 | 0.0 | |
| Q9LPK7 | 549 | Probable acyl-activating | no | no | 0.950 | 0.985 | 0.616 | 0.0 | |
| F4HUK6 | 556 | Probable acyl-activating | no | no | 0.959 | 0.982 | 0.511 | 1e-160 | |
| Q9SEY5 | 603 | Probable acyl-activating | no | no | 0.968 | 0.913 | 0.519 | 1e-158 | |
| Q9C8D4 | 572 | Butyrate--CoA ligase AAE1 | no | no | 0.952 | 0.947 | 0.483 | 1e-152 | |
| Q9SS01 | 580 | Benzoate--CoA ligase, per | no | no | 0.950 | 0.932 | 0.476 | 1e-149 |
| >sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/565 (66%), Positives = 461/565 (81%), Gaps = 16/565 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIY-NNITYTWSDTHHRCLQLASSLLSI 59
MEQ+KP ANS PLTP+ FLERAATVYGD SI+Y +N YTW +T+ RCL++ASSL SI
Sbjct: 1 MEQMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
GI R VVSV+SPN PA+YEL FAVP + A+LN INTRLDARTVS+LL+HC SKL+FVD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDV 120
Query: 120 HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS-TYESLVAKGD 178
S L EA+S+ D PP LV I+D ++ + +++D FS TY+ L+ +GD
Sbjct: 121 FSVDLAVEAISMMTTD--PPILVFIADKEE-----EGGDADVADRTKFSYTYDDLIHRGD 173
Query: 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL 238
+F+WIRP +EWDP+VLNYTSGTT +PKGVVHCHRGIF++++++L DW+VP PVYLWTL
Sbjct: 174 LDFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTL 233
Query: 239 PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP 298
P+FH+NGW +PW +AAVGGTN+C+RKFDA +I+ LIR HGVTHMCGAPVVLNMLS +
Sbjct: 234 PIFHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLSATNE- 292
Query: 299 DKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLL 358
+PL +PV+++TAGAPPPAAVLLR ES+GF +SHGYGLTET G+ VSCAWK WN L
Sbjct: 293 -FQPLN--RPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRL 349
Query: 359 PAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
PA+++A+LKARQGV+T TE+DV+DP+SG S +R+G T+GEIV+RG IMLGYLKDP+G
Sbjct: 350 PASDRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVG 409
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
T K + +GWFYTGDVGV+HSDGYLEIKDRSKD+II+GGEN+SSVEVE+VLY+NPAVNE
Sbjct: 410 TEKAL-KNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEV 468
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AVVARPD FWGETPCAFVSLK G +PTE EMIEYCR ++P YMVPKTV F+DELPKTS
Sbjct: 469 AVVARPDVFWGETPCAFVSLKSGLTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTS 528
Query: 539 TGKIQKFVLREIAENMGSSSSPLSR 563
TGK+ KFVLREIA+ MG++ LSR
Sbjct: 529 TGKVMKFVLREIAKKMGTTR--LSR 551
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/560 (66%), Positives = 460/560 (82%), Gaps = 14/560 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIY-NNITYTWSDTHHRCLQLASSLLSI 59
ME++KP ANS PLTP+ FLERAATVYGD SI+Y +N YTW +T+ RCL++ASSL SI
Sbjct: 1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
GI R VVSV+SPN PA+YEL FAVP + A+LN INTRLDARTVS+LL+HC+SKL+FVD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120
Query: 120 HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS-TYESLVAKGD 178
S L EAVS+ D PP LV+I+D ++ + +++D FS TY+ L+ +GD
Sbjct: 121 FSVDLAVEAVSMMTTD--PPILVVIADKEE-----EGGVADVADLSKFSYTYDDLIERGD 173
Query: 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL 238
P F+WIRP +EWDP+VLNYTSGTT +PKGVVHCHRGIF+++V++L DW+VP PVYLWTL
Sbjct: 174 PGFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTL 233
Query: 239 PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP 298
P+FHSNGW PW +AAVGGTN+C+RKFDA +I+ LIR HGVTHMCGAPVVLNMLS ++
Sbjct: 234 PIFHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLSATQE- 292
Query: 299 DKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLL 358
+PL PV+++TAG+PPPA VLLR ES+GF +SHGYGLTET G++VSCAWK WN L
Sbjct: 293 -SQPLN--HPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHL 349
Query: 359 PAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
PA+++A+LKARQGV+T TE+DV+DP+SG+S +R+G T+GEIV+RG +MLGYLKDP+G
Sbjct: 350 PASDRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVG 409
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
T K + +GWFYTGDVGV+HSDGYLEIKDRSKD+II+GGEN+SSVEVE+VLY+ PAVNE
Sbjct: 410 TEKAL-KNGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEV 468
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AVVARPDEFWGETPCAFVSLK G KPTE+E++EYCR ++P YMVPKTV FMDELPK+S
Sbjct: 469 AVVARPDEFWGETPCAFVSLKNGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSS 528
Query: 539 TGKIQKFVLREIAENMGSSS 558
TGK+ KFVLR+IA+ MG +
Sbjct: 529 TGKVTKFVLRDIAKKMGDKT 548
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/555 (64%), Positives = 447/555 (80%), Gaps = 12/555 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNIT-YTWSDTHHRCLQLASSLLSI 59
ME LKPS ANS PLT L FLERAATVYGD SI+Y N T YTW +T+HRCL +AS+L SI
Sbjct: 1 MEDLKPSAANSLPLTLLGFLERAATVYGDCTSIVYGNSTVYTWRETNHRCLCVASALSSI 60
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
GI R VVSV+S N P +YEL F+VP + A+LN INTRLDARTVS+LL+HC+SKL+FVDF
Sbjct: 61 GIGRSDVVSVLSANTPEMYELQFSVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDF 120
Query: 120 HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP 179
L EA+++ L PP LVLI+++++ ++ +F Y L+ +G+P
Sbjct: 121 FYSDLAVEAITML---LNPPILVLIANEEEEEGGAEV----TERSKFCYLYSDLITRGNP 173
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
+F+WIRP +EWDPIV+NYTSGTT SPKGVVHCHRGIF++ +++L+DW+VP PVYLWTLP
Sbjct: 174 DFKWIRPGSEWDPIVVNYTSGTTSSPKGVVHCHRGIFVMTLDSLTDWAVPKTPVYLWTLP 233
Query: 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD 299
+FH+NGW +PW +AAVGGTN+C+RK A I+ LIR HGVTHM GAP+VL +LS ++ D
Sbjct: 234 IFHANGWTYPWGIAAVGGTNVCVRKLHAPSIYHLIRDHGVTHMYGAPIVLQILSASQESD 293
Query: 300 KKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359
+ PLK PV+ +TAG+ PPA VLLR ESLGF VSHGYGLTET G++VSCAWK NWN LP
Sbjct: 294 Q-PLK--SPVNFLTAGSSPPATVLLRAESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLP 350
Query: 360 AAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
A+++A+LK+RQGV+T +E+DV+DP+SG S +RDG T+GEIVLRG IMLGYLK+PIGT
Sbjct: 351 ASDQAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGT 410
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479
+ +GWF+TGD+GV+H DGYLEIKDRSKDVIISGGEN+SSVEVE+VLY+NPAVNEAA
Sbjct: 411 QNSF-KNGWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAA 469
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTST 539
VVARPDEFWGETPCAFVSLK G KPT+KE+IEYC+ ++P YM PKTV F++ELPKTST
Sbjct: 470 VVARPDEFWGETPCAFVSLKPGLTRKPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTST 529
Query: 540 GKIQKFVLREIAENM 554
GKI K +L+EIA+NM
Sbjct: 530 GKIIKSLLKEIAKNM 544
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LPK6|AEE9_ARATH Probable acyl-activating enzyme 9 OS=Arabidopsis thaliana GN=AEE9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/559 (61%), Positives = 434/559 (77%), Gaps = 15/559 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYN-NITYTWSDTHHRCLQLASSLLS- 58
ME L P P+NSTPLT L FL+RAA+VYGD PSI++ N +TWS+TH+RCL++AS+L S
Sbjct: 1 MELLLPHPSNSTPLTVLGFLDRAASVYGDCPSILHTTNTVHTWSETHNRCLRIASALTSS 60
Query: 59 -IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117
+GI+RG VVSVV PNVP++YEL FAVP + A+LN IN RLDA +S+LL+H +SKLVFV
Sbjct: 61 SLGINRGQVVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESKLVFV 120
Query: 118 DFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKG 177
D +S ++V EAVS + KP ++L D +D ++S P+ + D F TY+ ++ +G
Sbjct: 121 DPNSISVVLEAVSFMRQNEKPHLVLLDDDQEDGSLS-----PSAASD-FLDTYQGVMERG 174
Query: 178 DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWT 237
D F+WIRP+TEW P++LNYTSGTT SPKGVV HR IF++ V++L DW P +PVYLWT
Sbjct: 175 DSRFKWIRPQTEWQPMILNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWHFPNRPVYLWT 234
Query: 238 LPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD 297
LPMFH+NGW + W AAVG TN+C R+ DA I+DLI +H VTHMC AP+VLNML+NY
Sbjct: 235 LPMFHANGWGYTWGTAAVGATNVCTRRVDAPTIYDLIDKHHVTHMCAAPMVLNMLTNY-- 292
Query: 298 PDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNL 357
P +KPLK PV ++TAGAPPPAA++ R E+LGF V HGYGLTETGG VVSCAWK W+
Sbjct: 293 PSRKPLK--NPVQVMTAGAPPPAAIISRAETLGFNVGHGYGLTETGGPVVSCAWKAEWDH 350
Query: 358 LPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417
L E+A+LK+RQGV+T EVDV DP++G S + DG ++GEIVL+GG +MLGY KDP
Sbjct: 351 LDPLERARLKSRQGVRTIGFAEVDVRDPRTGKSVEHDGVSVGEIVLKGGSVMLGYYKDPE 410
Query: 418 GTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477
GT CM +DGWFY+GDVGV+H DGYLE+KDRSKDVII GGEN+SS EVE+VLY+NP V E
Sbjct: 411 GTAACMREDGWFYSGDVGVIHEDGYLEVKDRSKDVIICGGENISSAEVETVLYTNPVVKE 470
Query: 478 AAVVARPDEFWGETPCAFVSLKEGSKSKP--TEKEMIEYCRGRLPHYMVPKTVVFMDELP 535
AAVVA+PD+ WGETPCAFVSLK S TE+E+ E+C+ RLP YMVP+ V+F +ELP
Sbjct: 471 AAVVAKPDKMWGETPCAFVSLKYDSNGNGLVTEREIREFCKTRLPKYMVPRKVIFQEELP 530
Query: 536 KTSTGKIQKFVLREIAENM 554
KTSTGKIQKF+LR++A+++
Sbjct: 531 KTSTGKIQKFLLRQMAKSL 549
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|O80658|AAE4_ARATH Probable acyl-activating enzyme 4 OS=Arabidopsis thaliana GN=AEE4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/556 (60%), Positives = 430/556 (77%), Gaps = 14/556 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSL--LS 58
ME L P +NS PLT L FLERAA+V+GDSPS+++ +TWS+TH RCL++AS+L S
Sbjct: 1 MELLLPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSETHSRCLRIASTLSSAS 60
Query: 59 IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVD 118
+GI+RG VVSV+ PNVP++YEL FAVP + AVLN IN RLDA +S+LL+H +SKLVFVD
Sbjct: 61 LGINRGQVVSVIGPNVPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVD 120
Query: 119 FHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGD 178
HS +LV EAVS P D +P LV+++D +D SS + D F TYE + +GD
Sbjct: 121 HHSSSLVLEAVSFLPKDERPR-LVILNDGNDMPSSSSA------DMDFLDTYEGFMERGD 173
Query: 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL 238
F+W+RP++EW P+VLNYTSGTT SPKGVVH HR +F+ +N+L DWS+P +PVYLWTL
Sbjct: 174 LRFKWVRPKSEWTPMVLNYTSGTTSSPKGVVHSHRSVFMSTINSLLDWSLPNRPVYLWTL 233
Query: 239 PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP 298
PMFH+NGW + WA AAVG NIC+ + D IF+LI ++ VTHMC AP+VLNML+N+ P
Sbjct: 234 PMFHANGWSYTWATAAVGARNICVTRVDVPTIFNLIDKYQVTHMCAAPMVLNMLTNH--P 291
Query: 299 DKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLL 358
+KPL+ PV ++TAGAPPPA V+ + E+LGF VSHGYG+TETGG+VVSCA K W+ L
Sbjct: 292 AQKPLQ--SPVKVMTAGAPPPATVISKAEALGFDVSHGYGMTETGGLVVSCALKPEWDRL 349
Query: 359 PAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
E+AK K+RQG++T EVDV DP SG S K DG+T+GEIV RGG +MLGY KDP G
Sbjct: 350 EPDERAKQKSRQGIRTAVFAEVDVRDPISGKSVKHDGATVGEIVFRGGSVMLGYYKDPEG 409
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
T M +DGWFYTGD+GVMH DGYLE+KDRSKDV+I GGEN+SS E+E+VLY+NPA+ EA
Sbjct: 410 TAASMREDGWFYTGDIGVMHPDGYLEVKDRSKDVVICGGENISSTELEAVLYTNPAIKEA 469
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AVVA+PD+ WGETPCAFVSLK S TE+E+ E+C+ +LP YMVP+ VVF++ELPKTS
Sbjct: 470 AVVAKPDKMWGETPCAFVSLKYHDGSV-TEREIREFCKTKLPKYMVPRNVVFLEELPKTS 528
Query: 539 TGKIQKFVLREIAENM 554
TGKIQKF+LR++A+++
Sbjct: 529 TGKIQKFLLRQMAKSL 544
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/561 (61%), Positives = 426/561 (75%), Gaps = 20/561 (3%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYN-NITYTWSDTHHRCLQLASSLLS- 58
ME L P P+NSTPLT L FL+RAA+VYGD PSI++ N +TWS+TH+RCL++AS+L S
Sbjct: 1 MELLLPHPSNSTPLTVLGFLDRAASVYGDCPSILHTANTVHTWSETHNRCLRIASALTSS 60
Query: 59 -IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117
IGI +G VVSVV PNVP++YEL FAVP + A+LN IN RLDA +S+LL+H +S+LVFV
Sbjct: 61 SIGIKQGQVVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFV 120
Query: 118 DFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKG 177
D S +LV EAVSLF KP LVL+ DD + SS S F TYE ++ +G
Sbjct: 121 DHRSISLVLEAVSLFTQHEKPH-LVLLDDDQENDSSSAS--------DFLDTYEEIMERG 171
Query: 178 DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWT 237
+ F+WIRP+TEW P+VLNYTSGTT SPKGVV HR IF++ V++L DWSVP +PVYLWT
Sbjct: 172 NSRFKWIRPQTEWQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWT 231
Query: 238 LPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD 297
LPMFH+NGW + W AAVG TNIC R+ DA I++LI +H VTHMC AP+VLNML NY
Sbjct: 232 LPMFHANGWGYTWGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINY-- 289
Query: 298 PDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNL 357
P PLK PV ++T+GAPPPA ++ R ESLGF VSH YGLTET G VVSCAWK W+
Sbjct: 290 PLSTPLK--NPVQVMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDH 347
Query: 358 LPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417
L E+A+LK+RQGV+T TEVDV D K+G S K DG ++GEIV RG +MLGY KDP
Sbjct: 348 LDPLERARLKSRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQ 407
Query: 418 GTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477
GT CM +DGWFY+GD+GV+H DGYLEIKDRSKDVII GGEN+SS E+E+VLY+NP V E
Sbjct: 408 GTAACMREDGWFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKE 467
Query: 478 AAVVARPDEFWGETPCAFVSLK---EGSKSKP-TEKEMIEYCRGRLPHYMVPKTVVFMDE 533
AAVVA+PD+ WGETPCAFVSLK G S P TE+E+ E+C+ +LP YMVP+ V+F +E
Sbjct: 468 AAVVAKPDKMWGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEE 527
Query: 534 LPKTSTGKIQKFVLREIAENM 554
LPKTSTGKIQKF+LR++A+ +
Sbjct: 528 LPKTSTGKIQKFLLRQMAKTL 548
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 286/559 (51%), Positives = 375/559 (67%), Gaps = 13/559 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
ME SPAN PLTP+ FL+R+A VY D SI+Y ++ YTW T RC+++AS+L +G
Sbjct: 3 MEGTIKSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLG 62
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
IS G VVSV++PNVPA+ ELHF VP A A+L T+N R D+ V++LL+H +K++F D
Sbjct: 63 ISTGDVVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQ 122
Query: 121 SRALVREAVSLFP-PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP 179
+ A + K P LVLI + +VS + + + YE +VA G
Sbjct: 123 FLQIAEGACEILSNKGDKVPILVLIPEPLTQSVSRKKRSEEMME------YEDVVAMGKS 176
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
+FE IRP E D I +NYTSGTT SPKGVV+ HRG ++ ++ + + + P YLWT P
Sbjct: 177 DFEVIRPTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNP 236
Query: 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD 299
MFH NGWC W + A+GGTNIC+R A IFD I +H VTHM GAP +LNM+ N + +
Sbjct: 237 MFHCNGWCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAPESE 296
Query: 300 KKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359
+KP L V +T APPPA V+ + E LGF + H YGLTET G C WK W+ LP
Sbjct: 297 QKP--LPGKVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLP 354
Query: 360 AAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
E+AK+KARQGV L E+ V DP + + DG T+GE+V RG +M GYLK+P T
Sbjct: 355 REEQAKMKARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEAT 414
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479
++ GWF++GD+GV H DGY+E+KDRSKD+IISGGEN+SS+EVES L+++P V EAA
Sbjct: 415 KEAF-KGGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAA 473
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTST 539
VVARPDE+WGET CAFV LK+GSK+ + +E+I YCR RLPHYM P+++VF D LPKTST
Sbjct: 474 VVARPDEYWGETACAFVKLKDGSKA--SAEELISYCRDRLPHYMAPRSIVFED-LPKTST 530
Query: 540 GKIQKFVLREIAENMGSSS 558
GK+QKFVLR A+ + S S
Sbjct: 531 GKVQKFVLRTKAKALVSLS 549
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust.
Identities = 291/560 (51%), Positives = 375/560 (66%), Gaps = 9/560 (1%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
+E L SPAN +PL+P+ FLER+A VY D S+++ ++ +TW T+ RCL+LAS+L ++G
Sbjct: 48 IEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTNLG 107
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
ISRG VV+ ++PNVPA++ELHFAVP A +L +NTRLD T+S+LL H ++K++FVD
Sbjct: 108 ISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVDHQ 167
Query: 121 SRALVREAVSLFPPD---LKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS-TYESLVAK 176
+ A+ L K LVLIS +D S + + F YE+L+
Sbjct: 168 LLEIAHGALDLLAKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETLLKS 227
Query: 177 GDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLW 236
GD EFE I+PR EWDPI +NYTSGTT PKGVV+ HRG ++ ++ T+ + PVYLW
Sbjct: 228 GDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPVYLW 287
Query: 237 TLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYR 296
T+PMFH NGWC W +AA GGTNIC+RK +IF I H VTHM GAP VLNM+ NY
Sbjct: 288 TVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIVNYT 347
Query: 297 DPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWN 356
+ KP L V ++T G+PP +L + E LGF VSH YGLTET G C WK W+
Sbjct: 348 VTEHKP--LPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWKPEWD 405
Query: 357 LLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDP 416
L E+ KLKARQGV+ L +DV DP + + DG T+GE++ RG +M GY KD
Sbjct: 406 SLSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFKDI 465
Query: 417 IGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVN 476
TRK D WF++GD+ V + DGY+EIKDR KDVIISGGEN+SSVEVE VL S+ AV
Sbjct: 466 EATRKAFEGD-WFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQAVL 524
Query: 477 EAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPK 536
EAAVVARPD WG+TPC FV LKEG + E E+I +CR LPHYM PKT+VF D +PK
Sbjct: 525 EAAVVARPDHHWGQTPCGFVKLKEGFDTIKPE-EIIGFCRDHLPHYMAPKTIVFGD-IPK 582
Query: 537 TSTGKIQKFVLREIAENMGS 556
TSTGK+QK++LR+ A+ MGS
Sbjct: 583 TSTGKVQKYLLRKKADEMGS 602
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 537 bits (1383), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/560 (48%), Positives = 364/560 (65%), Gaps = 18/560 (3%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M+ L AN+ PLTP+ FL+RA+ Y + SIIY +TW T+ RC +LA+SLLS+
Sbjct: 1 MDNLVLCEANNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLN 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I+R VVS+++PNVPA+YE+HF+VP AVLN INTRLDA+T++++L+H + K++FVD+
Sbjct: 61 ITRNDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYE 120
Query: 121 SRALVREAVSLFPP-DLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP 179
L++E + L P +P P +++ ++ D+ S + YE L+ KG+P
Sbjct: 121 FAPLIQEVLRLIPTYQSQPHPRIILINEIDSTTKPFSKELD---------YEGLIRKGEP 171
Query: 180 ----EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYL 235
R E DPI LNYTSGTT PKGVV H+G ++ A++++ W + PVYL
Sbjct: 172 TPSSSASMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYL 231
Query: 236 WTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY 295
WTLPMFH NGW W++AA GGTN+CIR A I+ I HGVTHM P V L
Sbjct: 232 WTLPMFHCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFLLEG 291
Query: 296 RDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNW 355
D+ P + PV ++T G+ PPA ++ + E LGF V HGYGLTE G V+ C W+ W
Sbjct: 292 SRTDQSP--KSSPVQVLTGGSSPPAVLIKKVEQLGFHVMHGYGLTEATGPVLFCEWQDEW 349
Query: 356 NLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKD 415
N LP ++ +L+ RQGV+ L +VDV + K+ S RDG T+GEIV++G +M GYLK+
Sbjct: 350 NKLPEHQQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKN 409
Query: 416 PIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAV 475
P T + GW TGD+GV+H DGY+EIKDRSKD+IISGGEN+SS+EVE VLY V
Sbjct: 410 PKATSEAF-KHGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEV 468
Query: 476 NEAAVVARPDEFWGETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDEL 534
EAAVVA P WGETPCAFV LK+G + T E ++I+YCR +PH+M PK VVF EL
Sbjct: 469 LEAAVVAMPHPLWGETPCAFVVLKKGEEGLVTSEGDLIKYCRENMPHFMCPKKVVFFQEL 528
Query: 535 PKTSTGKIQKFVLREIAENM 554
PK S GKI K LR+IA+ +
Sbjct: 529 PKNSNGKILKSKLRDIAKAL 548
|
Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9SS01|AAE20_ARATH Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/569 (47%), Positives = 363/569 (63%), Gaps = 28/569 (4%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M+ L AN+ PLTP+ FL+RA+ Y + SIIY +TW T+ RC +LA+SL+S+
Sbjct: 1 MDDLALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
IS+ VVSV++PN PALYE+HFAVP A AVLN INTRLDA +++ +L+H + K++F+D
Sbjct: 61 ISKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRS 120
Query: 121 SRALVREAVSLFPPDLK--PPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGD 178
AL RE++ L + P++ I ++D +S YE L+ +G+
Sbjct: 121 FEALARESLHLLSSEDSNLNLPVIFIHENDFPKRASFEE----------LDYECLIQRGE 170
Query: 179 PE----FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY 234
P R + E DPI LNYTSGTT PKGVV HRG ++ ++ + W + T PVY
Sbjct: 171 PTPSMVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVY 230
Query: 235 LWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSN 294
LWTLPMFH NGW F W AA GGT++C+R A I+ I H VTHMC P V N+L
Sbjct: 231 LWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLK 290
Query: 295 YRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRN 354
D P + PVH++T G+PPPAA++ + + LGF+V H YG TE G ++ C W+
Sbjct: 291 GNSLDLSP--RSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDE 348
Query: 355 WNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLK 414
WN LP ++ +LKARQG+ L +VDV + ++ SA RDG T+GEI+++G IM GYLK
Sbjct: 349 WNRLPENQQMELKARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLK 408
Query: 415 DPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPA 474
+P T + GW TGDVGV+H DG++EIKDRSKD+IISGGEN+SSVEVE+VLY P
Sbjct: 409 NPKATFEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPK 467
Query: 475 VNEAAVVARPDEFWGETPCAFVSLKEGS---------KSKPTEKEMIEYCRGRLPHYMVP 525
V E AVVA P WGETPCAFV L++ K + E+ +IEYCR LPH+M P
Sbjct: 468 VLETAVVAMPHPTWGETPCAFVVLEKSETTIKEDRVDKFQTRERNLIEYCRENLPHFMCP 527
Query: 526 KTVVFMDELPKTSTGKIQKFVLREIAENM 554
+ VVF++ELPK GKI K LR+IA+ +
Sbjct: 528 RKVVFLEELPKNGNGKILKPKLRDIAKGL 556
|
Benzoate--CoA ligase involved in benzoyloxyglucosinolate biosynthesis in seeds. Glucosinolates are secondary metabolites involved in pathogen and insect defense of cruciferous plants. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 569 | ||||||
| 359476425 | 588 | PREDICTED: medium-chain-fatty-acid--CoA | 0.956 | 0.925 | 0.745 | 0.0 | |
| 255561466 | 556 | AMP dependent ligase, putative [Ricinus | 0.968 | 0.991 | 0.745 | 0.0 | |
| 225466183 | 549 | PREDICTED: putative acyl-CoA synthetase | 0.963 | 0.998 | 0.730 | 0.0 | |
| 224134905 | 553 | predicted protein [Populus trichocarpa] | 0.963 | 0.990 | 0.737 | 0.0 | |
| 224118022 | 554 | acyl:coa ligase acetate-coa synthetase-l | 0.968 | 0.994 | 0.728 | 0.0 | |
| 147800064 | 537 | hypothetical protein VITISV_042774 [Viti | 0.942 | 0.998 | 0.722 | 0.0 | |
| 224127758 | 550 | acyl:coa ligase acetate-coa synthetase-l | 0.957 | 0.990 | 0.716 | 0.0 | |
| 356500978 | 549 | PREDICTED: medium-chain-fatty-acid--CoA | 0.949 | 0.983 | 0.713 | 0.0 | |
| 357491647 | 562 | 2-succinylbenzoate-CoA ligase [Medicago | 0.984 | 0.996 | 0.691 | 0.0 | |
| 255562407 | 562 | AMP dependent ligase, putative [Ricinus | 0.964 | 0.976 | 0.704 | 0.0 |
| >gi|359476425|ref|XP_002263877.2| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/557 (74%), Positives = 481/557 (86%), Gaps = 13/557 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
ME+LKP PANS+PLT L FL+RAATVYGD PS++YN+ TYTWS THHRCLQ+ASS+ S+G
Sbjct: 40 MEELKPRPANSSPLTTLSFLDRAATVYGDCPSVVYNSTTYTWSQTHHRCLQVASSIKSLG 99
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I RG VVSVV+PN+PA+YELHFAVP A AVLNTINTRLDA+TVS+LL+H +SKL+FVD+
Sbjct: 100 IGRGQVVSVVAPNIPAMYELHFAVPMAGAVLNTINTRLDAKTVSVLLRHSESKLIFVDYQ 159
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
SR L+ E++SLFPP + P LVLI+DD+D+ P+ D F TYE +V +GDPE
Sbjct: 160 SRPLILESLSLFPPSSQRPLLVLITDDEDSP-------PSTVD--FLCTYEDMVGRGDPE 210
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F+WIRP +EW+P++LNYTSGTT SPKGVVHCHRGIFIV V++L DW VP QPVYLWTLPM
Sbjct: 211 FKWIRPESEWNPMILNYTSGTTSSPKGVVHCHRGIFIVTVDSLIDWCVPKQPVYLWTLPM 270
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
FH+NGW FPW MAAVGGTN+C+RKFDAS+I++ IR H VTHMCGAPVVLNMLSN+ P
Sbjct: 271 FHANGWSFPWGMAAVGGTNVCLRKFDASVIYEAIRVHRVTHMCGAPVVLNMLSNW--PGT 328
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
+PLK PV ++TAGAPPPAA+LLRTES GF VSHGYGLTETGG+VVSC WK+ WN LPA
Sbjct: 329 EPLK--NPVQILTAGAPPPAAILLRTESRGFIVSHGYGLTETGGLVVSCVWKQKWNRLPA 386
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
E+A+LK+RQGV+T +TEVDVLDP SG+S KRDGS+LGEIVLRGGCIMLGYLKDP GT
Sbjct: 387 TERARLKSRQGVRTVGMTEVDVLDPGSGLSVKRDGSSLGEIVLRGGCIMLGYLKDPKGTS 446
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
K +TDDGWF+TGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY++PAVNEAAV
Sbjct: 447 KSLTDDGWFFTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNEAAV 506
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
VARPD+FWGETPCAFVSLK +PTEKE++EYCR R+PHYMVPKTVVF +ELPKTSTG
Sbjct: 507 VARPDDFWGETPCAFVSLKPERTEQPTEKEIMEYCRARMPHYMVPKTVVFEEELPKTSTG 566
Query: 541 KIQKFVLREIAENMGSS 557
KIQKFVLRE A+ MGSS
Sbjct: 567 KIQKFVLRETAKAMGSS 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561466|ref|XP_002521743.1| AMP dependent ligase, putative [Ricinus communis] gi|223538956|gb|EEF40553.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/557 (74%), Positives = 479/557 (85%), Gaps = 6/557 (1%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M+ LKP PANS PLTPL FLERA+TVYGD PSI+YN TYTWS TH RCLQLASSL S G
Sbjct: 1 MDHLKPKPANSFPLTPLSFLERASTVYGDCPSIVYNTATYTWSQTHRRCLQLASSLSSGG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
+RG VVSVV+PN P +YEL FAVP + AVLN INTRLDARTVS+LL+H QSKLVFVD
Sbjct: 61 FTRGDVVSVVAPNTPPMYELQFAVPMSGAVLNNINTRLDARTVSVLLRHSQSKLVFVDCL 120
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
SR LV EAVSLFP +K P LVLI+DDD+A SS + + D F TYES+V KGDPE
Sbjct: 121 SRDLVLEAVSLFPSSVKRPTLVLITDDDEAPASSSTSSSSTVD--FCCTYESMVEKGDPE 178
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F+W++P++EWDP++LNYTSGTT SPKGVVHCHRGI+I+ V +L DW+VP QPVYLWTLP+
Sbjct: 179 FKWVQPQSEWDPMILNYTSGTTSSPKGVVHCHRGIYIITVESLIDWNVPRQPVYLWTLPL 238
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
FH+NGW FPW MAAVGGTNICIRKFDAS I+ LI+RHGVTHMCGAPVVLNML+N PD
Sbjct: 239 FHANGWSFPWGMAAVGGTNICIRKFDASSIYGLIKRHGVTHMCGAPVVLNMLTN--SPDN 296
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
+PLK +PVH++TAGAPPPAAVL RTESLGF VSHGYGLTET G+VVSCAWK WN +PA
Sbjct: 297 EPLK--RPVHILTAGAPPPAAVLFRTESLGFVVSHGYGLTETAGLVVSCAWKPKWNTVPA 354
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
+E+A+LKARQGV+ TE+DV+DPK+G+S KRDG +LGEIVLRGGC+M+GYLKDP GT
Sbjct: 355 SERARLKARQGVRIAGFTEIDVIDPKTGLSVKRDGLSLGEIVLRGGCVMMGYLKDPDGTS 414
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
KC+ DDGWFYTGDVGVMH DGYLEIKDRSKDVIISGGEN+SSVEVESVLYSNP VNEAAV
Sbjct: 415 KCLKDDGWFYTGDVGVMHPDGYLEIKDRSKDVIISGGENISSVEVESVLYSNPVVNEAAV 474
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
VARPDE+WGETPCAFVSL++G++ K +EK++IEYCR ++PHYMVPKTVVF +ELPKTSTG
Sbjct: 475 VARPDEYWGETPCAFVSLRDGAREKVSEKDIIEYCREKMPHYMVPKTVVFKEELPKTSTG 534
Query: 541 KIQKFVLREIAENMGSS 557
KIQKFVLR+IA+ MG+S
Sbjct: 535 KIQKFVLRDIAKAMGAS 551
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466183|ref|XP_002263801.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/563 (73%), Positives = 476/563 (84%), Gaps = 15/563 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M+ LKP PANS+PLTPL FL+RAATVYGD PS++YN+ITYTWS TH RCLQ+ASS+ S G
Sbjct: 1 MDSLKPRPANSSPLTPLGFLDRAATVYGDCPSVLYNSITYTWSQTHRRCLQVASSIKSFG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I RGHVVSVV+PNVPA+YELHFAVP + AVLNTINTRLDARTVS+LL+H +SKLVFVD
Sbjct: 61 IGRGHVVSVVAPNVPAMYELHFAVPMSGAVLNTINTRLDARTVSVLLRHSESKLVFVDCL 120
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
SRAL+ EA+SLFPP+ + P LVLI+D++ A S+ F TYE LV +GDPE
Sbjct: 121 SRALILEALSLFPPNTQWPLLVLIADEEVAPSSTV---------DFICTYEDLVERGDPE 171
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F+W+RP +EWDPI+LNYTSGTT SPKGVVHCHRGIFIV +++L +WSVP QPVYLWTLPM
Sbjct: 172 FKWVRPESEWDPIILNYTSGTTSSPKGVVHCHRGIFIVTIDSLVEWSVPKQPVYLWTLPM 231
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
FH NGW F W MAA+GGTN+C+RKFDA II+D I ++G+THMC APVVLNMLSNY P+
Sbjct: 232 FHGNGWTFTWGMAAIGGTNVCLRKFDARIIYDAIPKYGITHMCAAPVVLNMLSNY--PNH 289
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
+PL PV ++TAGAPPP +VLLRTESLGF VSHGYG+TET G+VVSCAWK W+ PA
Sbjct: 290 QPL--GDPVKILTAGAPPPYSVLLRTESLGFVVSHGYGMTETAGVVVSCAWKPQWDRFPA 347
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
+E+A++KARQGV+T +TEVDV+DPKSGVS KRDGS+LGEIVLRG CIMLGYLKDP GT
Sbjct: 348 SERARVKARQGVRTVVMTEVDVVDPKSGVSVKRDGSSLGEIVLRGACIMLGYLKDPEGTS 407
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
KCM+ +GW YTGDV VMH DGY+EIKDRSKDVIISGGENLSSVEVESVLY++PAVNEAAV
Sbjct: 408 KCMSKEGWLYTGDVAVMHPDGYIEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNEAAV 467
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
VARPD+FWGETPCAFVSLK S KPT KEM+EYCR R+PHYMVPKTVVF +ELPKTSTG
Sbjct: 468 VARPDDFWGETPCAFVSLKPESPDKPTAKEMMEYCRARMPHYMVPKTVVFKEELPKTSTG 527
Query: 541 KIQKFVLREIAENMGSSSSPLSR 563
KIQKF LR+IA+ MG SP SR
Sbjct: 528 KIQKFKLRDIAKAMG--CSPASR 548
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134905|ref|XP_002321934.1| predicted protein [Populus trichocarpa] gi|222868930|gb|EEF06061.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/557 (73%), Positives = 470/557 (84%), Gaps = 9/557 (1%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M++L+P P NS LTP+ FL+RAATVYGD PSIIYN+I+YTWS TH RCLQLASSL SIG
Sbjct: 1 MDELRPRPPNSYALTPVGFLDRAATVYGDCPSIIYNDISYTWSQTHSRCLQLASSLSSIG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I++GHVVSV++PN+PA+YELHFAVP A A+LNT+NTRLDART+SLLL H +SKL+FVD
Sbjct: 61 INKGHVVSVIAPNIPAMYELHFAVPMAGAILNTLNTRLDARTISLLLCHAESKLLFVDPM 120
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
+LV EA+SLFPP+ K PPLVLI+DD+ V SQ P I F+ TYESLV KGDP
Sbjct: 121 YVSLVHEAISLFPPNTKHPPLVLIADDE---VVSQQSSPTI---HFYDTYESLVEKGDPA 174
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F WIRP+ ++DPI LNYTSGTT SPKGVVHCHRG+FIV +++L DWS P QPV+LWTLPM
Sbjct: 175 FNWIRPKNDFDPIALNYTSGTTASPKGVVHCHRGLFIVTLDSLIDWSFPKQPVFLWTLPM 234
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
FHSNGW +PW MAAVGGTNICIRKFDA I+ LI +H VTHMCGAPVVLNMLSN
Sbjct: 235 FHSNGWSYPWGMAAVGGTNICIRKFDAPTIYGLIEKHRVTHMCGAPVVLNMLSN-SPTII 293
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
KPLK PVH++TAGAPPPA +L RTESLGF V HGYGLTETGGIVVSCAWKR W+L PA
Sbjct: 294 KPLK--NPVHIITAGAPPPATILSRTESLGFVVGHGYGLTETGGIVVSCAWKRQWSLFPA 351
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
E+A+LKARQGV+T + EVDV+DP +G S KRDGSTLGEIVLRGGCIMLGYLKDP+ T
Sbjct: 352 TERARLKARQGVRTIGMNEVDVVDPITGTSVKRDGSTLGEIVLRGGCIMLGYLKDPVATA 411
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
KCMT++GWFYTGDVGVMH DGYLEIKDRSKDVIISGGENLSSVEVESVLY+ P +NEAAV
Sbjct: 412 KCMTENGWFYTGDVGVMHPDGYLEIKDRSKDVIISGGENLSSVEVESVLYTFPDINEAAV 471
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
VARPDEFWGETPCAFV+LKE TEKE+IEYCR RLPHYMVPKTVV +ELPKT+TG
Sbjct: 472 VARPDEFWGETPCAFVTLKEACCKSTTEKEIIEYCRARLPHYMVPKTVVVTEELPKTATG 531
Query: 541 KIQKFVLREIAENMGSS 557
KIQK +LR++A++MGSS
Sbjct: 532 KIQKALLRDMAKDMGSS 548
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118022|ref|XP_002331538.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222873762|gb|EEF10893.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/559 (72%), Positives = 470/559 (84%), Gaps = 8/559 (1%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M++L+P PANS LTP+ FL+RAA VYGD PSIIYNNI+YTWS TH RCLQLASSL SIG
Sbjct: 1 MDELRPRPANSYALTPVGFLDRAAIVYGDCPSIIYNNISYTWSQTHRRCLQLASSLSSIG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
++ GHVVS+++PN+PA+YELHFAVP A A+LNT+NTRLDART+SLLL H +S+L+FVD
Sbjct: 61 LNNGHVVSILAPNIPAMYELHFAVPMAGAILNTLNTRLDARTISLLLCHAESELLFVDLM 120
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
S +LV EA+SL P KPP LVLI+DDD+ V Q P I F+ TYE L+ KGDP
Sbjct: 121 SVSLVNEAISLLPSSAKPPLLVLIADDDE--VLPQQPSPTI---HFYDTYEGLLEKGDPA 175
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F W RP+ ++DPIVLNYTSGTT SPKGVVHCHRG+FIV +++L DWS P QPV+LWTLPM
Sbjct: 176 FNWTRPKNDFDPIVLNYTSGTTSSPKGVVHCHRGLFIVTLDSLVDWSFPKQPVFLWTLPM 235
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
FHSNGW +PW MAAVGGTNIC+RKFDA I+ LI++HGVTHMCGAPVVLNMLSN
Sbjct: 236 FHSNGWSYPWGMAAVGGTNICLRKFDAPTIYGLIKKHGVTHMCGAPVVLNMLSN-SPITM 294
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
+PLK PVH++TAGAPPPA +L RTESLGF V HGYGLTETGGIVVSCAWKR WNL PA
Sbjct: 295 EPLK--NPVHIITAGAPPPATILSRTESLGFVVGHGYGLTETGGIVVSCAWKRQWNLFPA 352
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
E+A+LKARQGV+T +TEVDV+DP +G+S KRDG TLGEIVLRGGCIMLGYLKDP+ T
Sbjct: 353 TERARLKARQGVRTVGMTEVDVVDPVTGMSVKRDGLTLGEIVLRGGCIMLGYLKDPVATA 412
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
KCMT++GWF TGDVGVMH DGYLEIKDRSKDVIISGGENLSSVEVESVLY+ P +NEAAV
Sbjct: 413 KCMTENGWFCTGDVGVMHPDGYLEIKDRSKDVIISGGENLSSVEVESVLYTFPDINEAAV 472
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
VARPDEFWGETPCAFVSLKE PTEKE+IE+CRG+LPHYMVPKTVV ++LPKTSTG
Sbjct: 473 VARPDEFWGETPCAFVSLKEACCRIPTEKEIIEHCRGKLPHYMVPKTVVVKEKLPKTSTG 532
Query: 541 KIQKFVLREIAENMGSSSS 559
KIQK VLR++A+ MGSS +
Sbjct: 533 KIQKAVLRDMAKAMGSSRA 551
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147800064|emb|CAN64147.1| hypothetical protein VITISV_042774 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/563 (72%), Positives = 471/563 (83%), Gaps = 27/563 (4%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M+ LKP PANS+PLTPL FL+RAATVYGD PS++YN+ITYTWS TH RCLQ+ASS+ S G
Sbjct: 1 MDSLKPRPANSSPLTPLGFLDRAATVYGDCPSVLYNSITYTWSQTHRRCLQVASSIKSFG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I RGHVVSVV+PNVPA+YELHFAVP + AVLNTINTRLDARTVS+LL+H +SKLVFVD
Sbjct: 61 IGRGHVVSVVAPNVPAMYELHFAVPMSGAVLNTINTRLDARTVSVLLRHSESKLVFVDCL 120
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
SRAL+ EA+SLFPP+ + P LVLI+D++ A S+ +GDPE
Sbjct: 121 SRALILEALSLFPPNTQWPLLVLIADEEVAPSST---------------------RGDPE 159
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F+W+RP +EWDPI+LNYTSGTT SPKGVVHCHRGIFIV +++L +WSVP QPVYLWTLPM
Sbjct: 160 FKWVRPESEWDPIILNYTSGTTSSPKGVVHCHRGIFIVTIDSLVEWSVPKQPVYLWTLPM 219
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
FH NGW F W MAAVGGTN+C+RKFDA II+D I ++G+THMC APVVLNMLSNY P+
Sbjct: 220 FHGNGWTFTWGMAAVGGTNVCLRKFDARIIYDAIPKYGITHMCAAPVVLNMLSNY--PNH 277
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
+PL PV ++TAGAPPP +VLLRTESLGF VSHGYG+TET G+VVSCAWK W+ PA
Sbjct: 278 QPL--GYPVKILTAGAPPPYSVLLRTESLGFVVSHGYGMTETAGVVVSCAWKPQWDRFPA 335
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
+E+A++KARQGV+T +TEVDV+DPKSGVS KRDGS+LGEIVLRG CIMLGYLKDP GT
Sbjct: 336 SERARVKARQGVRTVVMTEVDVVDPKSGVSVKRDGSSLGEIVLRGACIMLGYLKDPEGTS 395
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
KCM+ +GW YTGDV VMH DGY+EIKDRSKDVIISGGENLSSVEVESVLY++PAVNEAAV
Sbjct: 396 KCMSKEGWLYTGDVAVMHPDGYIEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNEAAV 455
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
VARPD+FWGETPCAFVSLK GS KPT KEM+EYCR R+PHYMVPKTVVF +ELPKTSTG
Sbjct: 456 VARPDDFWGETPCAFVSLKPGSPDKPTAKEMMEYCRARMPHYMVPKTVVFKEELPKTSTG 515
Query: 541 KIQKFVLREIAENMGSSSSPLSR 563
KIQKF LR+IA+ MG SP SR
Sbjct: 516 KIQKFKLRDIAKAMG--CSPASR 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127758|ref|XP_002329170.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222870951|gb|EEF08082.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/557 (71%), Positives = 467/557 (83%), Gaps = 12/557 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
ME+LKP+PA+ +PLTPL FLER ATVYGD PS+IYNN TYTWS TH RCLQ+ASSL S G
Sbjct: 1 MEELKPTPASLSPLTPLAFLERTATVYGDCPSVIYNNSTYTWSQTHRRCLQVASSLSSYG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I GHVVSVV+PN+PA+YEL FAVP + A+LN INTRLDART+S+LL+H +SKLVFVD
Sbjct: 61 IKPGHVVSVVAPNIPAMYELQFAVPMSGAILNNINTRLDARTMSILLRHSESKLVFVDCL 120
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
SR ++ +A+SL PP+ K PPLVLI+DD +AA SS I+DD F YES+V KGDP
Sbjct: 121 SRDVILDAMSLLPPNTKRPPLVLIADDAEAAESS------ITDD-FCCAYESMVEKGDPG 173
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F+W++P +EWDP+VLNYTSGTT SPKGVVHCHR +F + V +L DW VP QPVYLWTLP+
Sbjct: 174 FKWVQPHSEWDPMVLNYTSGTTSSPKGVVHCHRSVFTITVGSLIDWGVPKQPVYLWTLPI 233
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
FH+NGW +PW +AAVGGTNIC+RKFD I+ LI+RHGVTHMCGAPVVL ML+N +K
Sbjct: 234 FHANGWSYPWGIAAVGGTNICLRKFDGPTIYSLIKRHGVTHMCGAPVVLTMLTN--STNK 291
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
+PL+ P+ ++TAGAPPP+AVL RTESLGF VSHGYGLTET G+VVSCAWK WN P
Sbjct: 292 EPLR--NPIQILTAGAPPPSAVLFRTESLGFVVSHGYGLTETAGLVVSCAWKPKWNTFPP 349
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
+E+A+LKARQGVK TE+DVL+P+SG S KRDG LGE+VL+GGCIMLGYLKDP GT
Sbjct: 350 SERARLKARQGVKIVGFTEIDVLEPESGKSVKRDGVALGEVVLKGGCIMLGYLKDPTGTS 409
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
KCM DGWFYTGDVGVMH DGYLEIKDRSKDVIISGGEN+SSVE+ESVLY++PAVNEAAV
Sbjct: 410 KCM-KDGWFYTGDVGVMHQDGYLEIKDRSKDVIISGGENISSVEIESVLYTHPAVNEAAV 468
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
VARPDEFWGETPCAFV LK+G KP EK+MI++CR ++PHYMVPKTVVF DELPKTSTG
Sbjct: 469 VARPDEFWGETPCAFVGLKDGLTQKPGEKDMIDFCREKMPHYMVPKTVVFKDELPKTSTG 528
Query: 541 KIQKFVLREIAENMGSS 557
KIQKFVLR IA++MGSS
Sbjct: 529 KIQKFVLRGIAKSMGSS 545
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500978|ref|XP_003519307.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/559 (71%), Positives = 464/559 (83%), Gaps = 19/559 (3%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
MEQLKPS ANS+PLTPL FL+RAATV+GD PS++YNN T+TWS T RCLQLAS+L S+G
Sbjct: 1 MEQLKPSAANSSPLTPLGFLDRAATVHGDVPSVVYNNTTFTWSQTRRRCLQLASALSSLG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I RG VVSVV+PN+PA+YELHFAVPFA A+LN INTRLDARTVS++L+H S LVFVD
Sbjct: 61 IRRGSVVSVVAPNIPAMYELHFAVPFAGAILNNINTRLDARTVSVILRHANSTLVFVDCA 120
Query: 121 SRALVREAVSLFPPDL-KPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP 179
SR LV EA+SLFP + + P L+LI+D+ + + P + F TYE LV+KGDP
Sbjct: 121 SRDLVLEALSLFPENQSQRPTLILITDE-----TIEKASPTV---DFLDTYEGLVSKGDP 172
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
F+W+ P +EWDPIVLNYTSGTT SPKGVVHCHRG FIVAV++L DW+VP PVYLWTLP
Sbjct: 173 GFKWVLPNSEWDPIVLNYTSGTTSSPKGVVHCHRGTFIVAVDSLIDWAVPKNPVYLWTLP 232
Query: 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD 299
MFH+NGW FP+ +AAVGGTNIC+RKFDA I++ LI+RH VTHMCGAPVVLNML+N P
Sbjct: 233 MFHANGWSFPYGIAAVGGTNICVRKFDAEIVYSLIKRHHVTHMCGAPVVLNMLTNANSP- 291
Query: 300 KKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359
L KPV ++TAGAPPPAAVL RTE+LGF VSHGYGLTETGG+VVSCAWK WN LP
Sbjct: 292 -----LEKPVQILTAGAPPPAAVLFRTEALGFVVSHGYGLTETGGLVVSCAWKGEWNKLP 346
Query: 360 AAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
A E+A+LKARQGV+T A+ EVDV+ P +G S KRDG ++GE+V++GGC+MLGYLKDP GT
Sbjct: 347 ATERARLKARQGVRTVAMAEVDVVGP-TGESVKRDGVSIGEVVMKGGCVMLGYLKDPSGT 405
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479
C +GWFYTGDVGVMH DGYLEIKDRSKDVIISGGENLSSVEVES+LY +PAVNEAA
Sbjct: 406 ASCF-KNGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESILYGHPAVNEAA 464
Query: 480 VVARPDEFWGETPCAFVSLKEG--SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKT 537
VVARP E+WGETPCAFVSLK+G K KPTEK++IEYCR +PHYMVPKTVVF DELPKT
Sbjct: 465 VVARPHEYWGETPCAFVSLKKGIKEKEKPTEKDIIEYCRDNMPHYMVPKTVVFKDELPKT 524
Query: 538 STGKIQKFVLREIAENMGS 556
STGKIQKFVLR+IA+ MGS
Sbjct: 525 STGKIQKFVLRQIAKEMGS 543
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357491647|ref|XP_003616111.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355517446|gb|AES99069.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/571 (69%), Positives = 464/571 (81%), Gaps = 11/571 (1%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M+QLKP+ AN++PLTPL FLER +T+Y ++PSIIYN+ +TWS TH RCLQLAS++ S+G
Sbjct: 1 MDQLKPTQANNSPLTPLTFLERTSTIYPNTPSIIYNDTVFTWSQTHKRCLQLASAITSLG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I RG+VVSV++PN+PA+YELHFAVPF A+LN INTRLDAR +S +L HC+SKLVFVD
Sbjct: 61 IRRGNVVSVIAPNIPAMYELHFAVPFTGAILNNINTRLDARIISNILLHCESKLVFVDIA 120
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
+R LV +A+SLFP P L+LI D + S + F STYE L+A GDP
Sbjct: 121 ARDLVLQALSLFPSKQHKPLLILIKDQTFETYENVSSSSTV---DFISTYEDLMASGDPN 177
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F W+ P +EWDP++LNYTSGTT SPKGVVH HRG FIV V+TL +W+VP QP+YLWTLPM
Sbjct: 178 FNWVYPNSEWDPMLLNYTSGTTSSPKGVVHSHRGAFIVTVDTLIEWTVPKQPIYLWTLPM 237
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
FH+NGW FPW +AAVGGTNIC+RKFDA I+F LIR+H VTHMCGAPVVLNML+N PD
Sbjct: 238 FHANGWSFPWGIAAVGGTNICVRKFDAEIVFSLIRKHHVTHMCGAPVVLNMLTN--SPDN 295
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
KPL+ K VH++TAGAPPPAAVL RTE+LGF VSHGYGLTETGG+VV C WK+ WNLLPA
Sbjct: 296 KPLQ--KTVHILTAGAPPPAAVLHRTEALGFTVSHGYGLTETGGLVVCCTWKKKWNLLPA 353
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420
E+A+LK+RQGV+T +T+VDV+ P SG S KRDG+TLGE+V+RGGC+MLGYLKD GT+
Sbjct: 354 TERARLKSRQGVRTLGMTKVDVVGP-SGESVKRDGATLGEVVMRGGCVMLGYLKDSEGTK 412
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
C GWFYTGDVGVMH DGYLEIKDRSKDVIISGGENLSSVEVESVLY +PAVNEAAV
Sbjct: 413 NCF-KKGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESVLYGHPAVNEAAV 471
Query: 481 VARPDEFWGETPCAFVSLKEGSKSK--PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
VAR DEFWGETPCAFVSLKEG K + PTEKE++EYCR LPHYMVPKTVVF DELPKTS
Sbjct: 472 VAREDEFWGETPCAFVSLKEGLKERDIPTEKEIVEYCRKNLPHYMVPKTVVFKDELPKTS 531
Query: 539 TGKIQKFVLREIAENMGSSSSPLSRSLTSRM 569
TGKIQKFVLR+IA++MG + SRM
Sbjct: 532 TGKIQKFVLRQIAKDMGPLRKDVGPPTKSRM 562
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562407|ref|XP_002522210.1| AMP dependent ligase, putative [Ricinus communis] gi|223538581|gb|EEF40185.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/565 (70%), Positives = 462/565 (81%), Gaps = 16/565 (2%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
ME LKP PAN++PLTPL F+ERAATVY D PSIIY+N TYTWS T+HRC++LASSL S+G
Sbjct: 1 MEDLKPGPANTSPLTPLSFIERAATVYDDCPSIIYDNTTYTWSQTYHRCIKLASSLSSLG 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
ISRGHVVSV++PNVPA+YELHFAVP A AVLNTIN RLDART+S+LLQH +S+L+FVD
Sbjct: 61 ISRGHVVSVLAPNVPAMYELHFAVPMAGAVLNTINIRLDARTISVLLQHGESELLFVDNL 120
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
+LV +A++LFPPD KPP LVL++DD+ V+S P I DQF TYE LV KGDP
Sbjct: 121 CVSLVLDAIALFPPDAKPPALVLVADDE---VNSS---PAI--DQFIDTYEGLVIKGDPS 172
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
F+W+RP +EWDPIVLNYTSGTT SPKGVVHCHRG FI A+N L DW VP QPV+LWTLPM
Sbjct: 173 FKWVRPISEWDPIVLNYTSGTTSSPKGVVHCHRGSFISAINGLIDWFVPNQPVFLWTLPM 232
Query: 241 FHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP-- 298
FHSNGW +PW++A VGG NIC+RKFD I+ LI++H VTHMC APVVLNMLSN P
Sbjct: 233 FHSNGWNYPWSLAVVGGVNICLRKFDGPTIYRLIKKHNVTHMCAAPVVLNMLSNNYSPTD 292
Query: 299 -DKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNL 357
+ + L PVH++TAGAPPPA+VL RTESLGF VSHGYG+TETGG VVSCAWK WN
Sbjct: 293 DNSQTPTLKNPVHILTAGAPPPASVLSRTESLGFIVSHGYGMTETGGTVVSCAWKSKWNQ 352
Query: 358 LPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417
PA E+A+LKARQGV+T + EVDVLDP++G S KRDG +LGEIVLRGGCIMLGYLK+P
Sbjct: 353 FPATERARLKARQGVRTIGMIEVDVLDPETGKSVKRDGLSLGEIVLRGGCIMLGYLKNPE 412
Query: 418 GTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477
T K M DDGWF+TGDVGVMH DGYLEIKDRSKDVIISGGEN+SSVEVESVLY++P + E
Sbjct: 413 TTSKQMNDDGWFFTGDVGVMHPDGYLEIKDRSKDVIISGGENVSSVEVESVLYTHPDIKE 472
Query: 478 AAVVARPDEFWGETPCAFVSLKEGSK----SKPTEKEMIEYCRGRLPHYMVPKTVVFMD- 532
AAVVARPDEFWGETPCAFVSLK+ EK++IEYCR R+PH+MVPK VV +
Sbjct: 473 AAVVARPDEFWGETPCAFVSLKDSGNGLIDQAMIEKKIIEYCRARMPHFMVPKMVVVIKG 532
Query: 533 ELPKTSTGKIQKFVLREIAENMGSS 557
ELPKTSTGKI+KFVLR++A MGSS
Sbjct: 533 ELPKTSTGKIKKFVLRDMARAMGSS 557
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 569 | ||||||
| TAIR|locus:2171357 | 550 | AT5G16340 [Arabidopsis thalian | 0.954 | 0.987 | 0.622 | 7.7e-190 | |
| TAIR|locus:2171402 | 552 | AAE5 "acyl activating enzyme 5 | 0.954 | 0.983 | 0.624 | 3e-188 | |
| TAIR|locus:2204360 | 544 | AT1G75960 [Arabidopsis thalian | 0.954 | 0.998 | 0.601 | 3.9e-179 | |
| TAIR|locus:2027032 | 550 | AT1G21540 [Arabidopsis thalian | 0.956 | 0.989 | 0.565 | 1.2e-168 | |
| TAIR|locus:2195950 | 545 | AAE2 "acyl activating enzyme 2 | 0.952 | 0.994 | 0.559 | 3.2e-168 | |
| TAIR|locus:2027012 | 549 | AT1G21530 [Arabidopsis thalian | 0.950 | 0.985 | 0.570 | 2.2e-167 | |
| TAIR|locus:2057249 | 603 | AT2G17650 [Arabidopsis thalian | 0.964 | 0.910 | 0.473 | 2.3e-133 | |
| TIGR_CMR|SPO_0677 | 542 | SPO_0677 "AMP-binding protein" | 0.929 | 0.976 | 0.461 | 1.9e-131 | |
| TAIR|locus:2030407 | 556 | AAE1 "acyl activating enzyme 1 | 0.949 | 0.971 | 0.470 | 1.7e-130 | |
| UNIPROTKB|Q47WB3 | 541 | CPS_4259 "AMP-binding protein" | 0.929 | 0.977 | 0.456 | 2e-127 |
| TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1840 (652.8 bits), Expect = 7.7e-190, P = 7.7e-190
Identities = 347/557 (62%), Positives = 420/557 (75%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIY-NNITYTWSDTHHRCLQLASSLLSI 59
ME++KP ANS PLTP+ FLERAATVYGD SI+Y +N YTW +T+ RCL++ASSL SI
Sbjct: 1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
GI R VVSV+SPN PA+YEL FAVP + A+LN INTRLDARTVS+LL+HC+SKL+FVD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120
Query: 120 HSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFS-TYESLVAKGD 178
S L EAVS+ D PP LV+I +++D FS TY+ L+ +GD
Sbjct: 121 FSVDLAVEAVSMMTTD--PPILVVIADKEEEGGVA-----DVADLSKFSYTYDDLIERGD 173
Query: 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL 238
P F+WIRP +EWDP+VLNYTSGTT +PKGVVHCHRGIF+++V++L DW+VP PVYLWTL
Sbjct: 174 PGFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTL 233
Query: 239 PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXX 298
P+FHSNGW PW +AAVGGTN+C+RKFDA +I+ LIR HGVTHMCGAPVVLNMLS
Sbjct: 234 PIFHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS----A 289
Query: 299 XXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXX 358
V+++TAG+PPPA VLLR ES+GF +SHGYGLTET G++VSCAWK WN
Sbjct: 290 TQESQPLNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHL 349
Query: 359 XXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
RQGV+T TE+DV+DP+SG+S +R+G T+GEIV+RG +MLGYLKDP+G
Sbjct: 350 PASDRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVG 409
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T K + + GWFYTGDVGV+HSDGYLEIKDRSKD+II PAVNE
Sbjct: 410 TEKALKN-GWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEV 468
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AVVARPDEFWGETPCAFVSLK G KPTE+E++EYCR ++P YMVPKTV FMDELPK+S
Sbjct: 469 AVVARPDEFWGETPCAFVSLKNGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSS 528
Query: 539 TGKIQKFVLREIAENMG 555
TGK+ KFVLR+IA+ MG
Sbjct: 529 TGKVTKFVLRDIAKKMG 545
|
|
| TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
Identities = 348/557 (62%), Positives = 416/557 (74%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIY-NNITYTWSDTHHRCLQLASSLLSI 59
MEQ+KP ANS PLTP+ FLERAATVYGD SI+Y +N YTW +T+ RCL++ASSL SI
Sbjct: 1 MEQMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
GI R VVSV+SPN PA+YEL FAVP + A+LN INTRLDARTVS+LL+HC SKL+FVD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDV 120
Query: 120 HSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFS-TYESLVAKGD 178
S L EA+S+ D PP LV I +++D FS TY+ L+ +GD
Sbjct: 121 FSVDLAVEAISMMTTD--PPILVFIADKEEEGGDA-----DVADRTKFSYTYDDLIHRGD 173
Query: 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL 238
+F+WIRP +EWDP+VLNYTSGTT +PKGVVHCHRGIF++++++L DW+VP PVYLWTL
Sbjct: 174 LDFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTL 233
Query: 239 PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXX 298
P+FH+NGW +PW +AAVGGTN+C+RKFDA +I+ LIR HGVTHMCGAPVVLNMLS
Sbjct: 234 PIFHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLS----A 289
Query: 299 XXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXX 358
V+++TAGAPPPAAVLLR ES+GF +SHGYGLTET G+ VSCAWK WN
Sbjct: 290 TNEFQPLNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRL 349
Query: 359 XXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
RQGV+T TE+DV+DP+SG S +R+G T+GEIV+RG IMLGYLKDP+G
Sbjct: 350 PASDRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVG 409
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T K + + GWFYTGDVGV+HSDGYLEIKDRSKD+II PAVNE
Sbjct: 410 TEKALKN-GWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEV 468
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AVVARPD FWGETPCAFVSLK G +PTE EMIEYCR ++P YMVPKTV F+DELPKTS
Sbjct: 469 AVVARPDVFWGETPCAFVSLKSGLTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTS 528
Query: 539 TGKIQKFVLREIAENMG 555
TGK+ KFVLREIA+ MG
Sbjct: 529 TGKVMKFVLREIAKKMG 545
|
|
| TAIR|locus:2204360 AT1G75960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1739 (617.2 bits), Expect = 3.9e-179, P = 3.9e-179
Identities = 334/555 (60%), Positives = 404/555 (72%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNIT-YTWSDTHHRCLQLASSLLSI 59
ME LKPS ANS PLT L FLERAATVYGD SI+Y N T YTW +T+HRCL +AS+L SI
Sbjct: 1 MEDLKPSAANSLPLTLLGFLERAATVYGDCTSIVYGNSTVYTWRETNHRCLCVASALSSI 60
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
GI R VVSV+S N P +YEL F+VP + A+LN INTRLDARTVS+LL+HC+SKL+FVDF
Sbjct: 61 GIGRSDVVSVLSANTPEMYELQFSVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDF 120
Query: 120 HSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDP 179
L EA+++ L PP LVLI + +F Y L+ +G+P
Sbjct: 121 FYSDLAVEAITML---LNPPILVLIANEEEEEGGAEVTERS----KFCYLYSDLITRGNP 173
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
+F+WIRP +EWDPIV+NYTSGTT SPKGVVHCHRGIF++ +++L+DW+VP PVYLWTLP
Sbjct: 174 DFKWIRPGSEWDPIVVNYTSGTTSSPKGVVHCHRGIFVMTLDSLTDWAVPKTPVYLWTLP 233
Query: 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXX 299
+FH+NGW +PW +AAVGGTN+C+RK A I+ LIR HGVTHM GAP+VL +LS
Sbjct: 234 IFHANGWTYPWGIAAVGGTNVCVRKLHAPSIYHLIRDHGVTHMYGAPIVLQILS---ASQ 290
Query: 300 XXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXX 359
V+ +TAG+ PPA VLLR ESLGF VSHGYGLTET G++VSCAWK NWN
Sbjct: 291 ESDQPLKSPVNFLTAGSSPPATVLLRAESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLP 350
Query: 360 XXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
RQGV+T +E+DV+DP+SG S +RDG T+GEIVLRG IMLGYLK+PIGT
Sbjct: 351 ASDQAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGT 410
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAA 479
+ + GWF+TGD+GV+H DGYLEIKDRSKDVII PAVNEAA
Sbjct: 411 QNSFKN-GWFFTGDLGVIHGDGYLEIKDRSKDVIISGGENVSSVEVEAVLYTNPAVNEAA 469
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTST 539
VVARPDEFWGETPCAFVSLK G KPT+KE+IEYC+ ++P YM PKTV F++ELPKTST
Sbjct: 470 VVARPDEFWGETPCAFVSLKPGLTRKPTDKEIIEYCKYKMPRYMAPKTVSFLEELPKTST 529
Query: 540 GKIQKFVLREIAENM 554
GKI K +L+EIA+NM
Sbjct: 530 GKIIKSLLKEIAKNM 544
|
|
| TAIR|locus:2027032 AT1G21540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1640 (582.4 bits), Expect = 1.2e-168, P = 1.2e-168
Identities = 316/559 (56%), Positives = 398/559 (71%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYN-NITYTWSDTHHRCLQLASSLLS- 58
ME L P P+NSTPLT L FL+RAA+VYGD PSI++ N +TWS+TH+RCL++AS+L S
Sbjct: 1 MELLLPHPSNSTPLTVLGFLDRAASVYGDCPSILHTTNTVHTWSETHNRCLRIASALTSS 60
Query: 59 -IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117
+GI+RG VVSVV PNVP++YEL FAVP + A+LN IN RLDA +S+LL+H +SKLVFV
Sbjct: 61 SLGINRGQVVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESKLVFV 120
Query: 118 DFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKG 177
D +S ++V EAVS + KP LVL+ P+ + D F TY+ ++ +G
Sbjct: 121 DPNSISVVLEAVSFMRQNEKPH-LVLLDDDQEDGSLS----PSAASD-FLDTYQGVMERG 174
Query: 178 DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWT 237
D F+WIRP+TEW P++LNYTSGTT SPKGVV HR IF++ V++L DW P +PVYLWT
Sbjct: 175 DSRFKWIRPQTEWQPMILNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWHFPNRPVYLWT 234
Query: 238 LPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRX 297
LPMFH+NGW + W AAVG TN+C R+ DA I+DLI +H VTHMC AP+VLNML+NY
Sbjct: 235 LPMFHANGWGYTWGTAAVGATNVCTRRVDAPTIYDLIDKHHVTHMCAAPMVLNMLTNYPS 294
Query: 298 XXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNX 357
V ++TAGAPPPAA++ R E+LGF V HGYGLTETGG VVSCAWK W+
Sbjct: 295 RKPLKNP----VQVMTAGAPPPAAIISRAETLGFNVGHGYGLTETGGPVVSCAWKAEWDH 350
Query: 358 XXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417
RQGV+T EVDV DP++G S + DG ++GEIVL+GG +MLGY KDP
Sbjct: 351 LDPLERARLKSRQGVRTIGFAEVDVRDPRTGKSVEHDGVSVGEIVLKGGSVMLGYYKDPE 410
Query: 418 GTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNE 477
GT CM +DGWFY+GDVGV+H DGYLE+KDRSKDVII P V E
Sbjct: 411 GTAACMREDGWFYSGDVGVIHEDGYLEVKDRSKDVIICGGENISSAEVETVLYTNPVVKE 470
Query: 478 AAVVARPDEFWGETPCAFVSLKEGSKSKP--TEKEMIEYCRGRLPHYMVPKTVVFMDELP 535
AAVVA+PD+ WGETPCAFVSLK S TE+E+ E+C+ RLP YMVP+ V+F +ELP
Sbjct: 471 AAVVAKPDKMWGETPCAFVSLKYDSNGNGLVTEREIREFCKTRLPKYMVPRKVIFQEELP 530
Query: 536 KTSTGKIQKFVLREIAENM 554
KTSTGKIQKF+LR++A+++
Sbjct: 531 KTSTGKIQKFLLRQMAKSL 549
|
|
| TAIR|locus:2195950 AAE2 "acyl activating enzyme 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1636 (581.0 bits), Expect = 3.2e-168, P = 3.2e-168
Identities = 311/556 (55%), Positives = 394/556 (70%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSL--LS 58
ME L P +NS PLT L FLERAA+V+GDSPS+++ +TWS+TH RCL++AS+L S
Sbjct: 1 MELLLPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSETHSRCLRIASTLSSAS 60
Query: 59 IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVD 118
+GI+RG VVSV+ PNVP++YEL FAVP + AVLN IN RLDA +S+LL+H +SKLVFVD
Sbjct: 61 LGINRGQVVSVIGPNVPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVD 120
Query: 119 FHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGD 178
HS +LV EAVS P D +P LV++ +D F TYE + +GD
Sbjct: 121 HHSSSLVLEAVSFLPKDERPR-LVILNDGNDMPSSSS------ADMDFLDTYEGFMERGD 173
Query: 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL 238
F+W+RP++EW P+VLNYTSGTT SPKGVVH HR +F+ +N+L DWS+P +PVYLWTL
Sbjct: 174 LRFKWVRPKSEWTPMVLNYTSGTTSSPKGVVHSHRSVFMSTINSLLDWSLPNRPVYLWTL 233
Query: 239 PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXX 298
PMFH+NGW + WA AAVG NIC+ + D IF+LI ++ VTHMC AP+VLNML+N+
Sbjct: 234 PMFHANGWSYTWATAAVGARNICVTRVDVPTIFNLIDKYQVTHMCAAPMVLNMLTNHPAQ 293
Query: 299 XXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXX 358
V ++TAGAPPPA V+ + E+LGF VSHGYG+TETGG+VVSCA K W+
Sbjct: 294 KPLQSP----VKVMTAGAPPPATVISKAEALGFDVSHGYGMTETGGLVVSCALKPEWDRL 349
Query: 359 XXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
RQG++T EVDV DP SG S K DG+T+GEIV RGG +MLGY KDP G
Sbjct: 350 EPDERAKQKSRQGIRTAVFAEVDVRDPISGKSVKHDGATVGEIVFRGGSVMLGYYKDPEG 409
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEA 478
T M +DGWFYTGD+GVMH DGYLE+KDRSKDV+I PA+ EA
Sbjct: 410 TAASMREDGWFYTGDIGVMHPDGYLEVKDRSKDVVICGGENISSTELEAVLYTNPAIKEA 469
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AVVA+PD+ WGETPCAFVSLK S TE+E+ E+C+ +LP YMVP+ VVF++ELPKTS
Sbjct: 470 AVVAKPDKMWGETPCAFVSLKYHDGSV-TEREIREFCKTKLPKYMVPRNVVFLEELPKTS 528
Query: 539 TGKIQKFVLREIAENM 554
TGKIQKF+LR++A+++
Sbjct: 529 TGKIQKFLLRQMAKSL 544
|
|
| TAIR|locus:2027012 AT1G21530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
Identities = 320/561 (57%), Positives = 394/561 (70%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYN-NITYTWSDTHHRCLQLASSLLS- 58
ME L P P+NSTPLT L FL+RAA+VYGD PSI++ N +TWS+TH+RCL++AS+L S
Sbjct: 1 MELLLPHPSNSTPLTVLGFLDRAASVYGDCPSILHTANTVHTWSETHNRCLRIASALTSS 60
Query: 59 -IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117
IGI +G VVSVV PNVP++YEL FAVP + A+LN IN RLDA +S+LL+H +S+LVFV
Sbjct: 61 SIGIKQGQVVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFV 120
Query: 118 DFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKG 177
D S +LV EAVSLF KP LVL+ + + S F TYE ++ +G
Sbjct: 121 DHRSISLVLEAVSLFTQHEKPH-LVLLDDDQ--------ENDSSSASDFLDTYEEIMERG 171
Query: 178 DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWT 237
+ F+WIRP+TEW P+VLNYTSGTT SPKGVV HR IF++ V++L DWSVP +PVYLWT
Sbjct: 172 NSRFKWIRPQTEWQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWT 231
Query: 238 LPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRX 297
LPMFH+NGW + W AAVG TNIC R+ DA I++LI +H VTHMC AP+VLNML NY
Sbjct: 232 LPMFHANGWGYTWGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINYPL 291
Query: 298 XXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNX 357
V ++T+GAPPPA ++ R ESLGF VSH YGLTET G VVSCAWK W+
Sbjct: 292 STPLKNP----VQVMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDH 347
Query: 358 XXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417
RQGV+T TEVDV D K+G S K DG ++GEIV RG +MLGY KDP
Sbjct: 348 LDPLERARLKSRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQ 407
Query: 418 GTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNE 477
GT CM +DGWFY+GD+GV+H DGYLEIKDRSKDVII P V E
Sbjct: 408 GTAACMREDGWFYSGDIGVIHKDGYLEIKDRSKDVIICGGENISSAEIETVLYTNPVVKE 467
Query: 478 AAVVARPDEFWGETPCAFVSLK---EGSKSKP-TEKEMIEYCRGRLPHYMVPKTVVFMDE 533
AAVVA+PD+ WGETPCAFVSLK G S P TE+E+ E+C+ +LP YMVP+ V+F +E
Sbjct: 468 AAVVAKPDKMWGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKLPKYMVPRKVIFQEE 527
Query: 534 LPKTSTGKIQKFVLREIAENM 554
LPKTSTGKIQKF+LR++A+ +
Sbjct: 528 LPKTSTGKIQKFLLRQMAKTL 548
|
|
| TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
Identities = 265/560 (47%), Positives = 344/560 (61%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
+E L SPAN +PL+P+ FLER+A VY D S+++ ++ +TW T+ RCL+LAS+L ++G
Sbjct: 48 IEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTNLG 107
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
ISRG VV+ ++PNVPA++ELHFAVP A +L +NTRLD T+S+LL H ++K++FVD
Sbjct: 108 ISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVDHQ 167
Query: 121 SRALVREAVSLFPPD---LKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFS-TYESLVAK 176
+ A+ L K LVLI + F YE+L+
Sbjct: 168 LLEIAHGALDLLAKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETLLKS 227
Query: 177 GDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLW 236
GD EFE I+PR EWDPI +NYTSGTT PKGVV+ HRG ++ ++ T+ + PVYLW
Sbjct: 228 GDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPVYLW 287
Query: 237 TLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYR 296
T+PMFH NGWC W +AA GGTNIC+RK +IF I H VTHM GAP VLNM+ NY
Sbjct: 288 TVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIVNY- 346
Query: 297 XXXXXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWN 356
V ++T G+PP +L + E LGF VSH YGLTET G C WK W+
Sbjct: 347 -TVTEHKPLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWKPEWD 405
Query: 357 XXXXXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDP 416
RQGV+ L +DV DP + + DG T+GE++ RG +M GY KD
Sbjct: 406 SLSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFKDI 465
Query: 417 IGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVN 476
TRK D WF++GD+ V + DGY+EIKDR KDVII AV
Sbjct: 466 EATRKAFEGD-WFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQAVL 524
Query: 477 EAAVVARPDEFWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELP 535
EAAVVARPD WG+TPC FV LKEG + KP +E+I +CR LPHYM PKT+VF D +P
Sbjct: 525 EAAVVARPDHHWGQTPCGFVKLKEGFDTIKP--EEIIGFCRDHLPHYMAPKTIVFGD-IP 581
Query: 536 KTSTGKIQKFVLREIAENMG 555
KTSTGK+QK++LR+ A+ MG
Sbjct: 582 KTSTGKVQKYLLRKKADEMG 601
|
|
| TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1289 (458.8 bits), Expect = 1.9e-131, P = 1.9e-131
Identities = 255/552 (46%), Positives = 343/552 (62%)
Query: 2 EQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGI 61
+ L +PAN TPL+PL ++ER A VY D PS++Y + YTW++T+ RC +LAS+L G+
Sbjct: 9 QHLDRTPANFTPLSPLSYIERTAAVYPDYPSVVYGDRRYTWAETYTRCRRLASALAGRGL 68
Query: 62 SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS 121
+G VS+++ N+P +YE HF VP A AVLN INTRLDA ++ +L H +++++ VD
Sbjct: 69 GKGDTVSIIAANIPEMYEAHFGVPMAGAVLNAINTRLDAPIIAFILSHAEARVLIVDPEF 128
Query: 122 RALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFST--YESLVAKGDP 179
+VR+A++ + P L+++ P+ + T Y++L+A+GDP
Sbjct: 129 SEVVRDALA----QIDRPDLLVVDI----------EDPSFAGGAPVGTLSYDALLAEGDP 174
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
+F+W P EWD I LNYTSGTT +PKGVV+ HRG + A + + W +P VYLWTLP
Sbjct: 175 DFDWSLPGDEWDAIALNYTSGTTGNPKGVVYHHRGAALNATSNILTWGMPQHAVYLWTLP 234
Query: 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXX 299
MFH NGWCFPW MAA G ++C+R I+ R VTH CGAP+VLNML+N
Sbjct: 235 MFHCNGWCFPWTMAANAGVSVCLRAVRDEPIYRAFREEKVTHFCGAPIVLNMLAN---AP 291
Query: 300 XXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXX 359
+ ++TAGAPPPAAV+ + E++G V+H YGLTET G V CAWK W+
Sbjct: 292 DHMKDFDHQIKVMTAGAPPPAAVIEKMEAMGVDVTHVYGLTETYGPSVVCAWKEEWDGRP 351
Query: 360 XXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
RQGV+ AL+ + V DP++ DG T+GEI ++G +M GYLK+P T
Sbjct: 352 GAERAALKVRQGVRYVALSGLMVADPETLEPVPADGETMGEIFMQGNIVMKGYLKNPDAT 411
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAA 479
+ GWF +GD+GVMH DGY+ +KDRSKD+II PAV EAA
Sbjct: 412 DRAFRG-GWFASGDLGVMHPDGYIALKDRSKDIIISGGENISSVEVEDVLYKHPAVMEAA 470
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTST 539
VVARPDE WGETPCAFV LK G + + +I +CR + H+ PKTVVF ELPKTST
Sbjct: 471 VVARPDEKWGETPCAFVELKPGQSVEAAD--LIAHCRANMAHFKAPKTVVF-GELPKTST 527
Query: 540 GKIQKFVLREIA 551
GKIQKF+LRE A
Sbjct: 528 GKIQKFLLRERA 539
|
|
| TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
Identities = 260/553 (47%), Positives = 335/553 (60%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
ME SPAN PLTP+ FL+R+A VY D SI+Y ++ YTW T RC+++AS+L +G
Sbjct: 3 MEGTIKSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLG 62
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
IS G VVSV++PNVPA+ ELHF VP A A+L T+N R D+ V++LL+H +K++F D
Sbjct: 63 ISTGDVVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQ 122
Query: 121 SRALVREAVSLFP-PDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFSTYESLVAKGDP 179
+ A + K P LVLI + + YE +VA G
Sbjct: 123 FLQIAEGACEILSNKGDKVPILVLIPEPLTQSVSRKKRSEEMME------YEDVVAMGKS 176
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
+FE IRP E D I +NYTSGTT SPKGVV+ HRG ++ ++ + + + P YLWT P
Sbjct: 177 DFEVIRPTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNP 236
Query: 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXX 299
MFH NGWC W + A+GGTNIC+R A IFD I +H VTHM GAP +LNM+ N
Sbjct: 237 MFHCNGWCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIIN--APE 294
Query: 300 XXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXX 359
V +T APPPA V+ + E LGF + H YGLTET G C WK W+
Sbjct: 295 SEQKPLPGKVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLP 354
Query: 360 XXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
RQGV L E+ V DP + + DG T+GE+V RG +M GYLK+P T
Sbjct: 355 REEQAKMKARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEAT 414
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAA 479
++ GWF++GD+GV H DGY+E+KDRSKD+II P V EAA
Sbjct: 415 KEAFKG-GWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAA 473
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTST 539
VVARPDE+WGET CAFV LK+GSK+ + +E+I YCR RLPHYM P+++VF D LPKTST
Sbjct: 474 VVARPDEYWGETACAFVKLKDGSKA--SAEELISYCRDRLPHYMAPRSIVFED-LPKTST 530
Query: 540 GKIQKFVLREIAE 552
GK+QKFVLR A+
Sbjct: 531 GKVQKFVLRTKAK 543
|
|
| UNIPROTKB|Q47WB3 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 252/552 (45%), Positives = 341/552 (61%)
Query: 2 EQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGI 61
+ L+P+ AN LTP+ FLERAA VY D + + +I +TW + RC + AS+L GI
Sbjct: 9 QYLEPNEANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGI 68
Query: 62 SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS 121
RG VSV++PN+ +E+HF VP + AVLN+INTRLDA ++ +L H ++K++ D
Sbjct: 69 GRGDTVSVIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEF 128
Query: 122 RALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQFFS--TYESLVAKGDP 179
+V++A+ + P PLV+ PN ++ Q TY+ L+ +GD
Sbjct: 129 SPIVKKALRMIPHK----PLVI-----------DIDDPNFNEGQLIGSLTYDQLLEEGDS 173
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
+FE IRP+ EWD I LNYTSGTT PKGVV+ +RG ++ AV+ + WS+ PVYLWTLP
Sbjct: 174 DFESIRPKNEWDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLP 233
Query: 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRXXX 299
MFH NGWCFPW++AA GT++ +R A IF+LIR V + CGAP+VLNML+
Sbjct: 234 MFHCNGWCFPWSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNG--AEP 291
Query: 300 XXXXXXXXXVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNXXX 359
V ++TAGAPPPA+V+ E+ GFKV+H YGLTET G V CAW WN
Sbjct: 292 SLKADINHPVKVMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEES 351
Query: 360 XXXXXXXXXRQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
RQGV++ L ++ V DP++ +DG ++GEI +RG +M GYLK+P T
Sbjct: 352 PEKQAKLKSRQGVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNP-ST 410
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAA 479
+ D GW ++GD+ V HSDGY+EIKDRSKDVII P V E A
Sbjct: 411 TQAAFDGGWLHSGDIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVA 470
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTST 539
VVA+ D+ WGETPCAF++ + TE+EMI +CR + H+ PKT++F ELPKTST
Sbjct: 471 VVAKKDDKWGETPCAFITPMPNVEI--TEQEMISFCRDNMAHFKAPKTIIF-GELPKTST 527
Query: 540 GKIQKFVLREIA 551
GKIQKFVLR+ A
Sbjct: 528 GKIQKFVLRQQA 539
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O53306 | FAC13_MYCTU | 6, ., 2, ., 1, ., 3 | 0.3159 | 0.8172 | 0.9244 | yes | no |
| Q9FFE6 | AAE5_ARATH | 6, ., 2, ., 1, ., - | 0.6654 | 0.9648 | 0.9945 | yes | no |
| Q5SKN9 | LCFCS_THET8 | 6, ., 2, ., 1, ., 3 | 0.3388 | 0.8892 | 0.9353 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00023414001 | SubName- Full=Chromosome undetermined scaffold_30, whole genome shotgun sequence; (549 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 569 | |||
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 0.0 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 0.0 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 0.0 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.0 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 1e-144 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-143 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-143 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-131 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-113 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-104 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-104 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-94 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 8e-91 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-85 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 9e-82 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 6e-81 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 7e-78 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 3e-76 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-74 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-74 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-73 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 5e-73 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-71 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-71 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-69 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 5e-69 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 6e-69 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-67 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 7e-67 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-65 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-65 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-65 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-63 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 9e-63 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-61 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 5e-61 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 8e-60 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-59 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 4e-59 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 1e-58 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 4e-58 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 2e-57 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 5e-57 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 8e-57 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 7e-56 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 4e-55 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-54 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 4e-54 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-53 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 7e-53 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-51 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 4e-51 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 4e-51 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 1e-50 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 3e-50 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 6e-50 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 8e-49 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-48 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-46 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 3e-46 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 7e-45 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 1e-44 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-44 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 5e-44 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 4e-43 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 9e-43 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 1e-42 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 2e-42 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 3e-42 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 5e-42 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 8e-42 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-41 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-41 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-40 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 6e-40 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 8e-40 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 3e-39 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-38 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 4e-38 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 1e-37 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 1e-37 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-37 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 4e-37 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-36 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 1e-36 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 3e-36 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 3e-36 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 1e-35 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-34 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 3e-33 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 8e-33 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 9e-33 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 4e-32 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 5e-32 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-31 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 8e-31 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-30 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 3e-30 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 3e-30 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-29 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-29 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 5e-29 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-28 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 2e-28 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 2e-27 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 6e-26 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 1e-25 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 1e-25 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 5e-25 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-24 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 5e-24 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-22 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-22 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 3e-22 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 8e-21 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 9e-21 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 1e-20 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 1e-20 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 5e-20 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-19 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 4e-19 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 1e-18 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 2e-18 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 4e-18 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-17 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-16 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 4e-16 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 8e-16 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 8e-16 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-15 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 2e-15 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-15 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-15 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 3e-15 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 5e-15 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-14 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 7e-14 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-13 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 3e-13 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 4e-13 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 5e-13 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-13 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 7e-13 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 7e-13 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-12 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-12 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 5e-12 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 6e-12 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 3e-11 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 3e-11 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 5e-11 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 6e-11 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 7e-11 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 1e-10 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 5e-10 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 8e-10 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 8e-10 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 2e-09 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 4e-09 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 5e-09 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 1e-08 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-08 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 3e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 7e-08 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 8e-08 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 4e-07 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 6e-07 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 9e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-06 | |
| TIGR02372 | 386 | TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase | 3e-06 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 4e-06 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 4e-06 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 5e-06 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 5e-05 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 1e-04 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-04 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 6e-04 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 7e-04 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 0.001 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 0.002 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.002 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 0.003 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 0.003 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 803 bits (2076), Expect = 0.0
Identities = 296/538 (55%), Positives = 381/538 (70%), Gaps = 19/538 (3%)
Query: 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVS 71
PLTPL FLERAA VY D +++Y + YT+ +T+ RC +LAS+L +GI +G VV+V++
Sbjct: 2 VPLTPLSFLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLA 61
Query: 72 PNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSL 131
PN PA+ E HF VP A AVL +NTRLDA ++ +L H ++K++FVD +L EA++L
Sbjct: 62 PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121
Query: 132 FPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWD 191
+++ YE L+A GDP+ I P EWD
Sbjct: 122 LSTKEIIDTEIIVISPAAEDSEEG-------------DYEDLLAGGDPDPLPIPPDDEWD 168
Query: 192 PIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWA 251
PI LNYTSGTT +PKGVV+ HRG ++ A+ + +W +P +PVYLWTLPMFH NGWCFPWA
Sbjct: 169 PISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFPWA 228
Query: 252 MAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311
+ AVGGT++C+RK DA I+DLI +H VTH+CGAP VLNML+N + DK PL +PV +
Sbjct: 229 ITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEADKLPLP--RPVRV 286
Query: 312 VTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQG 371
+TAGAPPP AV+ + E LGF+V+H YGLTET G + C WK W+ LPA E+A+LKARQG
Sbjct: 287 MTAGAPPPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQG 346
Query: 372 VKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYT 431
V+ L EVDV+DP++ RDG T+GEIV+RG +M GY K+P T + GWF++
Sbjct: 347 VRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFA-GGWFHS 405
Query: 432 GDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGET 491
GD+ V+H DGY+EIKDRSKD+IISGGEN+SS+EVE VLY +PAV EAAVVARPDE WGET
Sbjct: 406 GDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGET 465
Query: 492 PCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
PCAFV LK G + TE+E+IEYCR +L H+ VPKTV F+ ELPKT+TGKIQKFVLRE
Sbjct: 466 PCAFVVLKPG--ASVTEEELIEYCREKLAHFKVPKTVEFV-ELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 762 bits (1969), Expect = 0.0
Identities = 294/550 (53%), Positives = 376/550 (68%), Gaps = 22/550 (4%)
Query: 4 LKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISR 63
L + AN PLTPL FLERAA VY D P++I+ + TW++T+ RC +LAS+L GI R
Sbjct: 8 LDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGR 67
Query: 64 GHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA 123
G V+V+ PN+PA+ E HF VP A AVLNT+NTRLDA +++ +L+H ++K++ VD
Sbjct: 68 GDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAE 127
Query: 124 LVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST--YESLVAKGDPEF 181
+ REA++L P P PLV+ D DD P +F YE+ +A GDP+F
Sbjct: 128 VAREALALLP---GPKPLVI--DVDD---------PEYPGGRFIGALDYEAFLASGDPDF 173
Query: 182 EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMF 241
W P EWD I LNYTSGTT +PKGVV+ HRG ++ A++ + W +P PVYLWTLPMF
Sbjct: 174 AWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMF 233
Query: 242 HSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK 301
H NGWCFPW +AA GTN+C+RK D +IFDLIR HGVTH CGAP+VL+ L N +
Sbjct: 234 HCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA 293
Query: 302 PLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAA 361
+ PVH + AGA PPAAV+ + E +GF ++H YGLTET G CAW+ W+ LP
Sbjct: 294 G--IDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLD 351
Query: 362 EKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421
E+A+LKARQGV+ V VLDP + DG T+GEI+ RG +M GYLK+P T +
Sbjct: 352 ERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEE 411
Query: 422 CMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481
GWF+TGD+ V+H DGY++IKDRSKD+IISGGEN+SS+EVE VLY +PAV AAVV
Sbjct: 412 AFA-GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVV 470
Query: 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGK 541
A+PD WGE PCAFV LK+G+ + TE+E+I +CR L + VPK VVF ELPKTSTGK
Sbjct: 471 AKPDPKWGEVPCAFVELKDGASA--TEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGK 527
Query: 542 IQKFVLREIA 551
IQKFVLRE A
Sbjct: 528 IQKFVLREQA 537
|
Length = 545 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 635 bits (1639), Expect = 0.0
Identities = 280/573 (48%), Positives = 373/573 (65%), Gaps = 23/573 (4%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
++ L + AN T LTPL FLERAA V+ S+++ ++ YTW+ T+ RC +LAS+L
Sbjct: 7 IDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRS 66
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I G V+V++PN+PA+YE HF VP A AV+N +N RL+A T++ LL+H +S++V VD
Sbjct: 67 IGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQE 126
Query: 121 SRALVREAVSLFPP----DLKPPPLVLISDD--DDAAVSSQSHHPNISDDQFFSTYESLV 174
L EA+ + KPP L++I D D ++ I YE +
Sbjct: 127 FFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIE-------YEKFL 179
Query: 175 AKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY 234
GDPEF W P EW I L YTSGTT SPKGVV HRG +++A++ W + VY
Sbjct: 180 ETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVY 239
Query: 235 LWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSN 294
LWTLPMFH NGWCF W +AA+ GTNIC+R+ A I+ I +GVTH C APVVLN + N
Sbjct: 240 LWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVN 299
Query: 295 YRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRN 354
+ L L + VH++TAGA PP +VL GF+V+H YGL+ET G CAWK
Sbjct: 300 -APKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPE 358
Query: 355 WNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLK 414
W+ LP E+A+L ARQGV+ L +DV+D K+ DG T+GEIV+RG +M GYLK
Sbjct: 359 WDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLK 418
Query: 415 DPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPA 474
+P + +GWF++GD+GV H DGY+EIKDRSKD+IISGGEN+SS+EVE+V+Y++PA
Sbjct: 419 NPKANEEAFA-NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPA 477
Query: 475 VNEAAVVARPDEFWGETPCAFVSLKEG---SKSKPTEKEMIEYCRGRLPHYMVPKTVVFM 531
V EA+VVARPDE WGE+PCAFV+LK G S ++++++CR RLP Y VPK+VVF
Sbjct: 478 VLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF- 536
Query: 532 DELPKTSTGKIQKFVLREIAENMGSSSSPLSRS 564
LPKT+TGKIQK VLR A+ MG P+ +S
Sbjct: 537 GPLPKTATGKIQKHVLRAKAKEMG----PVKKS 565
|
Length = 567 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 580 bits (1496), Expect = 0.0
Identities = 273/568 (48%), Positives = 360/568 (63%), Gaps = 27/568 (4%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
M+ L AN+ PLTP+ FL+RA+ Y + SIIY +TW T+ RC +LA+SL+S+
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
I++ VVSV++PN PA+YE+HFAVP A AVLN INTRLDA +++ +L+H + K++FVD
Sbjct: 61 ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRS 120
Query: 121 SRALVREAVSLFPPDLKP--PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGD 178
L RE + L + P++ I + D S YE L+ +G+
Sbjct: 121 FEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEE----------LDYECLIQRGE 170
Query: 179 PE----FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY 234
P R + E DPI LNYTSGTT PKGVV HRG ++ ++ + W + T PVY
Sbjct: 171 PTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVY 230
Query: 235 LWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSN 294
LWTLPMFH NGW F W AA GGT++C+R A I+ I H VTHMC P V N+L
Sbjct: 231 LWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLK 290
Query: 295 YRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRN 354
D P + PVH++T G+PPPAA++ + + LGF+V H YGLTE G V+ C W+
Sbjct: 291 GNSLDLSP--RSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDE 348
Query: 355 WNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLK 414
WN LP ++ +LKARQGV L +VDV + ++ S RDG T+GEIV++G IM GYLK
Sbjct: 349 WNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLK 408
Query: 415 DPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPA 474
+P T + GW TGDVGV+H DG++EIKDRSKD+IISGGEN+SSVEVE+VLY P
Sbjct: 409 NPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPK 467
Query: 475 VNEAAVVARPDEFWGETPCAFVSLKEGSKSKP--------TEKEMIEYCRGRLPHYMVPK 526
V E AVVA P WGETPCAFV L++G +K E+++IEYCR LPH+M P+
Sbjct: 468 VLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPR 527
Query: 527 TVVFMDELPKTSTGKIQKFVLREIAENM 554
VVF+ ELPK GKI K LR+IA+ +
Sbjct: 528 KVVFLQELPKNGNGKILKPKLRDIAKGL 555
|
Length = 579 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 426 bits (1096), Expect = e-144
Identities = 166/542 (30%), Positives = 242/542 (44%), Gaps = 38/542 (7%)
Query: 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSP 72
R V T+++ + R +L L ++G+ G V+ +
Sbjct: 1 LERAAALFGRKEVVSR---LHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGF 57
Query: 73 NVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLF 132
N E +FAVP AVL+T N RL + ++ +L H + K++ D + LV
Sbjct: 58 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE- 116
Query: 133 PPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDP 192
+ + H D+ + E E
Sbjct: 117 -------------------LKTVQHFV--VMDEKAPEGYLAYEEALGEEADPVRVPERAA 155
Query: 193 IVLNYTSGTTMSPKGVVHCHRGIFI--VAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250
+ YT+GTT PKGVV+ HR + + +A + + ++ + V L +PMFH N WC P+
Sbjct: 156 CGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY 215
Query: 251 AMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV 309
A VG + D + + +L GVT G P V L++Y + LK
Sbjct: 216 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL--R 273
Query: 310 HLVTAGAPPPAAVLLRTESLG-FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA 368
LV G+ P L+ +V GYGLTET +VV K + L EK LKA
Sbjct: 274 RLVVGGSAAPR-SLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 332
Query: 369 RQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGW 428
+ G+ + V D + +DG LGE+ L+G I GY + TR +T DG+
Sbjct: 333 KTGLPIPL-VRLRVADEEG-RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGF 390
Query: 429 FYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFW 488
F TGD+ V +GY+EIKDR KD+I SGGE +SSV++E+ L +P V EAAVVA P W
Sbjct: 391 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 450
Query: 489 GETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHY-MVPKTVVFMDELPKTSTGKIQKFVL 547
E P A V + KPT +E+ E+ +P VF +E+P+TS GK K L
Sbjct: 451 QERPLAVVVPRG---EKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRAL 507
Query: 548 RE 549
RE
Sbjct: 508 RE 509
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 424 bits (1093), Expect = e-143
Identities = 182/550 (33%), Positives = 256/550 (46%), Gaps = 41/550 (7%)
Query: 13 PLTPLVFLERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVV 70
LT LERAA D P++I+ T+ + R +LA++L ++G+ G V+++
Sbjct: 10 ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAIL 69
Query: 71 SPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVS 130
PN P A A AV +N RL R ++ +L +K++ AL+
Sbjct: 70 LPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAV-- 127
Query: 131 LFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEW 190
+ P LV++ D DD+ T E+L A+G RP
Sbjct: 128 ---AEALPVVLVVLLVGDA-------------DDRLPITLEALAAEGPGPDADARPVDPD 171
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF 248
D L YTSGTT PKGVV HR + + + V L LP+FH G
Sbjct: 172 DLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIV 231
Query: 249 PW-AMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKL 305
A GGT + + FD + LI ++ VT + G P L L + + D L
Sbjct: 232 GLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSS 291
Query: 306 AKPVHLVTAGAPPPAAVLLRTESLG--FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
+ + +++ GAP P +L R E + GYGLTET +V
Sbjct: 292 SLRL-VLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA------- 343
Query: 364 AKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423
K + EV ++DP G +GEI +RG +M GY P T +
Sbjct: 344 ---KPGSVGRPLPGVEVRIVDPDGGEVL---PGEVGEIWVRGPNVMKGYWNRPEATAEAF 397
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483
+DGW TGD+G + DGYL I R KD+IISGGEN+ E+E+VL +PAV EAAVV
Sbjct: 398 DEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGV 457
Query: 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543
PDE WGE A V LK G ++ T +E+ + R RL Y VP+ VVF+DELP+T++GKI
Sbjct: 458 PDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKID 517
Query: 544 KFVLREIAEN 553
+ LRE
Sbjct: 518 RRALREEYRA 527
|
Length = 534 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 423 bits (1090), Expect = e-143
Identities = 184/537 (34%), Positives = 257/537 (47%), Gaps = 38/537 (7%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L A + D ++ ++ T+++ R +LA++L ++G+ +G V+V N
Sbjct: 11 ILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYL 70
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP 138
E +FAVP AVL+ IN RL ++ +L + ++V VD L+ + P
Sbjct: 71 EAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTV 130
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYT 198
++ D A ++ + YE L+A F++ E D + YT
Sbjct: 131 ---IVEGDGPAAPLAPEVGE-----------YEELLAAASDTFDFPDI-DENDAAAMLYT 175
Query: 199 SGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVG 256
SGTT PKGVV HR +F +AV S VYL +PMFH + W P+ G
Sbjct: 176 SGTTGHPKGVVLSHRNLFLHSLAVCAWLKLS--RDDVYLVIVPMFHVHAWGLPYLALMAG 233
Query: 257 GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK---PLKLAKPVHLVT 313
+ R+FD + DLI VT P + ML L+L ++
Sbjct: 234 AKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRL-----VIY 288
Query: 314 AGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV 372
GA P A+L E G + GYG+TET VVS L K G
Sbjct: 289 GGAALPPALLREFKEKFGIDLVQGYGMTETSP-VVSVLPP-EDQLPGQWTKR---RSAG- 342
Query: 373 KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTG 432
+ E ++D G DG +GEI++RG +M GY P T + + D GW +TG
Sbjct: 343 RPLPGVEARIVDD-DGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTG 400
Query: 433 DVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492
DVG + DGYL I DR KDVIISGGEN+ E+E LY +PAV E AV+ PDE WGE P
Sbjct: 401 DVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERP 460
Query: 493 CAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
A V LK G + KE+ + RGRL + +PK + F+DELP+TS GKI K VLRE
Sbjct: 461 VAVVVLKPG--ATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLRE 515
|
Length = 521 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 393 bits (1013), Expect = e-131
Identities = 199/540 (36%), Positives = 291/540 (53%), Gaps = 32/540 (5%)
Query: 19 FLERAATVYGDSPSIIYNNI-----TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN 73
LE AA +GD I+ YT++D + R +LA++L S+G+ G V+ ++ N
Sbjct: 1 ILEHAARYFGDR-EIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWN 59
Query: 74 VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFP 133
EL+FAVP AVL+T+N RL ++ ++ H + K++FVD L+ EA++
Sbjct: 60 THRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLL-EAIAPRL 118
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRT-EWDP 192
P +K V + P S ++ YE L+ + PE+EW P E
Sbjct: 119 PTVKAVV-----------VYDDADMPETSLPNVYA-YEELLEEESPEYEW--PELDENTA 164
Query: 193 IVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTLPMFHSNGWCFPW 250
L YTSGTT +PKGVV+ HR + + + + S+ L +PMFH N W P+
Sbjct: 165 AGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHVNAWGLPY 224
Query: 251 AMAAVGGTNI-CIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV 309
A VG + R D + + DLI VT G P + L NY + L+
Sbjct: 225 AATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNY--LEANGKDLSSLR 282
Query: 310 HLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKAR 369
+V G+ P +++ + E G +V H +G+TET + K + LP EK +L+A+
Sbjct: 283 RVVVGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAK 342
Query: 370 QGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWF 429
QG + E+ ++D G DG T+GE+V+RG + Y KDP T + +T DGWF
Sbjct: 343 QG-RPVPGVELRIVDD-EGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEE-LTRDGWF 399
Query: 430 YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489
TGDV V+ DGY++I DR+KDVI SGGE +SSVE+E+ L ++PAV EAAVV P E WG
Sbjct: 400 RTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWG 459
Query: 490 ETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
E P A V LK G +K TE+E++E+ ++ + +P VVF+DE+PKTS GK K LRE
Sbjct: 460 ERPLAVVVLKPG--AKVTEEELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 339 bits (872), Expect = e-113
Identities = 144/364 (39%), Positives = 191/364 (52%), Gaps = 29/364 (7%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250
DP ++ YTSGTT PKGV+ HR + AVN L+ + VYL P++H+ G F
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLL 61
Query: 251 AMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVH 310
A GGT + + KFD + DLI RH VTH P + L R PD L+
Sbjct: 62 PALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLL--RLPDFARYDLSSLRL 119
Query: 311 LVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKAR 369
++ AP PA + E G GYG+TETG LL + +
Sbjct: 120 IIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTT---------LLSPEDWLRKLGS 170
Query: 370 QGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMT 424
G + EV ++D DG L GEIV+RG +M GY P T + +
Sbjct: 171 VG-RPVPGVEVRIVDE--------DGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL- 220
Query: 425 DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484
DGW +TGD+G + DGYL I DR KD+IISGGEN+ EVE+VL ++PAV + AV+ P
Sbjct: 221 RDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVP 280
Query: 485 DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
DE WGE A V L+ G + +E+I +CR RL Y VPK+V F+DELP+ ++GKI K
Sbjct: 281 DEEWGEAVVAVVVLRPG--ATLDAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILK 338
Query: 545 FVLR 548
LR
Sbjct: 339 RELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 322 bits (828), Expect = e-104
Identities = 172/545 (31%), Positives = 241/545 (44%), Gaps = 95/545 (17%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
LERAA + D P++ + T+++ + A+ L +G+ +G V+++ PN P
Sbjct: 4 LLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFP 63
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP 138
+F + A AV+ +N R + L +K++ V + P
Sbjct: 64 IAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALASG--------AP 115
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYT 198
PL + DD AV L YT
Sbjct: 116 LPLPVELSPDDLAV------------------------------------------LQYT 133
Query: 199 SGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP---VYLWTLPMFHSNGW-CFPWAMAA 254
GTT PKG + HR + V ++ W + +L LP+FH G
Sbjct: 134 GGTTGVPKGAMLTHRNLVAN-VQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLR 192
Query: 255 VGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP---DKKPLKLAKPVHL 311
+G TN+ + F + I+R+ T G P + N L N+ + D L+L
Sbjct: 193 LGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLC----- 247
Query: 312 VTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQ 370
++ GAP P V R E G + GYGLTET + N L K
Sbjct: 248 ISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTT-------VNPLDGERKP------ 294
Query: 371 GVKTTAL--TEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCM 423
G L TEV ++D +G+ L GE+V+RG +M GY P T + +
Sbjct: 295 GSIGLPLPGTEVKIVDD--------EGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVL 346
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483
TD GW TGD+G M DGY I DR KD+II GG N+ E+E VLYS+PAV EAAVV
Sbjct: 347 TD-GWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGV 405
Query: 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543
PD + GE AFV LKEG + TE+E+I +CR RL Y VP+ V F DELPK++ GKI
Sbjct: 406 PDPYRGEAVKAFVVLKEG--ASLTEEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKIL 463
Query: 544 KFVLR 548
+ LR
Sbjct: 464 RRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 317 bits (816), Expect = e-104
Identities = 135/361 (37%), Positives = 182/361 (50%), Gaps = 19/361 (5%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250
DP ++ YTSGTT PKG + HR + + + L +P+FH G
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGV 62
Query: 251 AMA-AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV 309
+ G T + + KFD LI R +T + G P + L PD L+
Sbjct: 63 LASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIAL--LEHPDFDKFDLSSLR 120
Query: 310 HLVTAGAPPPAAVLLR-TESLGFKVSH-GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
++ GAP P ++ R E GYG+TET G+ + + P
Sbjct: 121 TGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGT------ 174
Query: 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDG 427
G + EV ++DP G G GEI +RG +M GY DP T + + DG
Sbjct: 175 --VG-RPLPGVEVKIVDPDGGEVP--PGEV-GEICVRGYSVMKGYYNDPEATAEAIDADG 228
Query: 428 WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEF 487
W +TGD+G M DGYL I R KD+II GGEN+ E+E L ++PAV EAAVV PDE
Sbjct: 229 WLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDER 288
Query: 488 WGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547
GE AFV LK G + TE+E+I +CRGRL + VP+ V F+DELP+T++GKIQKF L
Sbjct: 289 LGEVVAAFVVLKPG--ATLTEEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKL 346
Query: 548 R 548
R
Sbjct: 347 R 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 1e-94
Identities = 174/548 (31%), Positives = 259/548 (47%), Gaps = 64/548 (11%)
Query: 20 LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVP---- 75
L RAA +GD + ++ + T+++ + R + A++L ++GI +G V++ +PN P
Sbjct: 11 LARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVI 70
Query: 76 ALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV--DFHSRALVREAVSLFP 133
A A AV+ +NTR A + +L +K +FV F V + +
Sbjct: 71 AALGALKA----GAVVVPLNTRYTADEAAYILARGDAKALFVLGLF---LGVDYSATTRL 123
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI 193
P L+ +V+ ++D + + T+ +A GDP D
Sbjct: 124 PALEH--VVICETEEDDPHTEKMK-----------TFTDFLAAGDPAER-APEVDPDDVA 169
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWS----VPTQPVYLWTLPMFHSNGW 246
+ +TSGTT PKG + HR LS DW+ + YL P FH +
Sbjct: 170 DILFTSGTTGRPKGAMLTHR-------QLLSNAADWAEYLGLTEGDRYLAANPFFHV--F 220
Query: 247 CFPWAMAAV---GGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPL 303
+ + A G T + + FD +F LI +T + G P + N L + PD+
Sbjct: 221 GYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQH--PDRSAE 278
Query: 304 KLAKPVHLVTAGAPPPAAVLLRTES-LGFK-VSHGYGLTETGGIVVSCAWKRNWNLLPAA 361
L+ VT A P A+L R ES LG V GYGL+E G+
Sbjct: 279 DLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFN---------RLD 329
Query: 362 EKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421
+ K A A E +++ + +GE+++RG +M GY DP T
Sbjct: 330 DDRKTVAGTIGTAIAGVENKIVNELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAA 386
Query: 422 CMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481
+ DGW +TGD+G + +GYL I DR KD+ I GG N+ EVE VLY +PAV EAAV+
Sbjct: 387 AIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVI 446
Query: 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGK 541
PDE GE A+V LK G++ TE+E+I YCR L Y VP+++ F+DELPK +TGK
Sbjct: 447 GVPDERLGEVGKAYVVLKPGAEL--TEEELIAYCREHLAKYKVPRSIEFLDELPKNATGK 504
Query: 542 IQKFVLRE 549
+ K LRE
Sbjct: 505 VLKRALRE 512
|
Length = 513 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 285 bits (730), Expect = 8e-91
Identities = 118/446 (26%), Positives = 186/446 (41%), Gaps = 40/446 (8%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDA 100
T+ + R +LA++L ++G+ G V+++ PN P AV A A ++ L A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 101 RTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160
++ +L+ ++K++ D P L L L+ V
Sbjct: 61 ERLAYILEDSEAKVLITD-----------DELLPKLLEVLLKLLVLLALIIV-------- 101
Query: 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV 220
D + + + G P D + YTSGTT PKGV+ HR + +A
Sbjct: 102 GDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAA 161
Query: 221 NTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKF--DASIIFDLIRRHG 278
+ + L LP+ + GGT + + KF D + + DLI ++
Sbjct: 162 GLAERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYK 221
Query: 279 VTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL--GFKVSHG 336
VT + G P +L +L + P++K L+ +++ G P P +L R G + +G
Sbjct: 222 VTVLYGVPTLLRLL--LKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNG 279
Query: 337 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGS 396
YG TET + + + + EV VLD + G
Sbjct: 280 YGPTETTVVATANLPGDPEVKPGSIGRP----------LPGVEVKVLDEEGEPVP--PGE 327
Query: 397 TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFY--TGDVGVMHSDGYLEIKDRSKDVII 454
GE+ +RG + GYL DP T + +DGW TGD+G DGYLEI R D +
Sbjct: 328 V-GELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVK 386
Query: 455 SGGENLSSVEVESVLYSNPAVNEAAV 480
GE + E+E+VL +P V EAAV
Sbjct: 387 IRGERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 274 bits (704), Expect = 2e-85
Identities = 163/543 (30%), Positives = 245/543 (45%), Gaps = 55/543 (10%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L R+A Y D ++++ + ++T+++ ++A++LL +G+ +G V+ + N A
Sbjct: 16 ILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYA 75
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP 138
L A A AV +N L ++ +L H ++ VD A++L P D
Sbjct: 76 LLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLI 135
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYT 198
LVL + + + + A E + + + D + YT
Sbjct: 136 LSLVLGGRE--------------APGGWLDFADWAEAGSVAEPD-VELADD-DLAQILYT 179
Query: 199 SGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW-CF--PWAMAAV 255
SGT PKG + HR + V+ + + + L LP++H F P+ V
Sbjct: 180 SGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLY--V 237
Query: 256 GGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLK-LAKPVHLVTA 314
G TN+ + D +I I +T P V L + D D + L L K +
Sbjct: 238 GATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYY---- 293
Query: 315 GAPP-PAAVLLR-TESL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAA-----EKAKL 366
GA P VL E L G + + YG TE P A E+
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTEIA---------------PLATVLGPEEHLR 338
Query: 367 KARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDD 426
+ + E V+D A G +GEIV R +MLGY DP T +
Sbjct: 339 RPGSAGRPVLNVETRVVDDDGNDVA--PG-EVGEIVHRSPQLMLGYWDDPEKTAEAFRG- 394
Query: 427 GWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDE 486
GWF++GD+GVM +GY+ + DR KD+I +GGEN++S EVE LY++PAV E AV+ PD
Sbjct: 395 GWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDP 454
Query: 487 FWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFV 546
W E A V K G+ TE E+I +CR RL + VPK V+F+DELP+ +GKI K
Sbjct: 455 KWIEAVTAVVVPKAGATV--TEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRE 512
Query: 547 LRE 549
LRE
Sbjct: 513 LRE 515
|
Length = 523 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 9e-82
Identities = 156/519 (30%), Positives = 219/519 (42%), Gaps = 90/519 (17%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
T+ + +LA++L +G+ G VV+ PN ++ A AV+N I
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60
Query: 99 DARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHH 158
R + +L+ A LF PD +
Sbjct: 61 RERELGFILRQA----------------RARVLFVPD----------------EFRGFDY 88
Query: 159 PNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIV 218
+ DD VA +L YTSGTT PKGV+H H +
Sbjct: 89 AAMPDD---------VA------------------LLLYTSGTTGEPKGVMHTHNTLLAE 121
Query: 219 AVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA-AVGGTNICIRKFDASIIFDLIRRH 277
+ + + V L P+ H G+ + + +G T + ++D + +LIR H
Sbjct: 122 VRSYVERLGLTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREH 181
Query: 278 GVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR-TESLGFKVSHG 336
GVT GA L L D L + + GAP P + R E+LG KV
Sbjct: 182 GVTFTMGATPFLADLLAAADAAGPDLPSLRVF--LCGGAPVPRELARRAAEALGAKVVRA 239
Query: 337 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGS 396
YG+TE + V P K A G EV ++D DG+
Sbjct: 240 YGMTEVPLVTVG---------TPDDPDDKRAATDGRPVPG-VEVRIVDD--------DGN 281
Query: 397 TL-----GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKD 451
+ GE+ +RG + LGYL P T TDDGWF TGD+G + +DGYL I R KD
Sbjct: 282 DVPPGEEGELQVRGPQLFLGYLDPPDNTEA-FTDDGWFRTGDLGRLDADGYLRITGRKKD 340
Query: 452 VIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEM 511
+II GGEN+S+ E+E +L +PAV E AVVA PDE GE CA V G + T E+
Sbjct: 341 IIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPG--ASLTLAEL 398
Query: 512 IEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
E+ L P+ + +D LP+T +GK+QKF LRE
Sbjct: 399 TEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 6e-81
Identities = 129/361 (35%), Positives = 174/361 (48%), Gaps = 31/361 (8%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG-WCFP 249
DP + YTSGTT PKGVV HR + A + V L LP+FH G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 250 WAMAAVGGTNICIRKFD-ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKP 308
GGT + F +LI ++ VT + G P + + L+ + L +
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDL--SSL 118
Query: 309 VHLVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
L++ G P +L R E G + GYGLTET + + K
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVT----------STNPDSELKKP 168
Query: 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKC 422
G + EV V+D +G L GE+V+RG +M GY +P T
Sbjct: 169 GTVG-RPVPGVEVRVVDE--------EGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAA 219
Query: 423 MTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482
T+DGW+ TGD+G + +GYL I RSKD+I GGEN+ EVESVL +PAV EAAVV
Sbjct: 220 ATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVG 279
Query: 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
PDE GE AFV L+ G + +E+ + R RL Y VP+ + F+DELPKT++GKI
Sbjct: 280 VPDEDRGERIVAFVVLRPG--ADALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKI 337
Query: 543 Q 543
Sbjct: 338 D 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 7e-78
Identities = 171/554 (30%), Positives = 267/554 (48%), Gaps = 46/554 (8%)
Query: 11 STPLTPLVFLERAATVYGDSPSIIYNNIT-----YTWSDTHHRCLQLASSLLSIGISRGH 65
PL + AA GD+ I+ + YT+ D R QLA +L ++G+ G
Sbjct: 7 DMPLLISSLIAHAARHAGDTE-IVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGD 65
Query: 66 VVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALV 125
V ++ N E ++ V + AV +TIN RL ++ ++ H + + V D LV
Sbjct: 66 RVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLV 125
Query: 126 REAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIR 185
+A++ P++K V ++D H P + YE+LV D +++W
Sbjct: 126 -DALAPQCPNVKG--WVAMTDAA--------HLP--AGSTPLLCYETLVGAQDGDYDW-- 170
Query: 186 PR-TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV-NTLSD-WSVPTQPVYLWTLPMFH 242
PR E L YTSGTT +PKG ++ HR + A L D + + L +PMFH
Sbjct: 171 PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFH 230
Query: 243 SNGWCFPWAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK 301
N W P++ G + D +++LI VT G P V L N+
Sbjct: 231 VNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG- 289
Query: 302 PLKLAKPVHLVTAG-APPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
L+ + V G A PPA + + G +V H +G+TE + C K + LP
Sbjct: 290 -LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPL 348
Query: 361 AEKAKLKARQGVKTTALTEVD--VLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLK---D 415
E+ KL +QG + VD ++ G DG G++ +RG ++ Y +
Sbjct: 349 DEQRKLLEKQG---RVIYGVDMKIVGD-DGRELPWDGKAFGDLQVRGPWVIDRYFRGDAS 404
Query: 416 PIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAV 475
P+ DGWF TGDV + +DG+++I DRSKDVI SGGE +SS+++E+V ++PAV
Sbjct: 405 PL-------VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAV 457
Query: 476 NEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELP 535
EAA +A W E P V + G++ T +E++ + G++ + +P VVF+D +P
Sbjct: 458 AEAACIACAHPKWDERPLLVVVKRPGAEV--TREELLAFYEGKVAKWWIPDDVVFVDAIP 515
Query: 536 KTSTGKIQKFVLRE 549
T+TGK+QK LRE
Sbjct: 516 HTATGKLQKLKLRE 529
|
Length = 539 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 3e-76
Identities = 158/545 (28%), Positives = 272/545 (49%), Gaps = 31/545 (5%)
Query: 13 PLTPLVFLERAATVYGD----SPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVS 68
PL ++ AA ++G+ + S+ + T++ H R L+++ +L GI G V+
Sbjct: 9 PLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVA 68
Query: 69 VVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREA 128
++ N E + + A+ +T+N RL ++ ++ H + ++V D ++ E
Sbjct: 69 TIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPIL-EK 127
Query: 129 VSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRT 188
++ P ++ V+++D AA Q+ N YE +A+ D +F W +
Sbjct: 128 IADKLPSVER--YVVLTD---AAHMPQTTLKNAV------AYEEWIAEADGDFAW-KTFD 175
Query: 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT--QPVYLWTLPMFHSNGW 246
E + YTSGTT PKGV++ HR + A+ + ++ T L +P+FH+N W
Sbjct: 176 ENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSW 235
Query: 247 CFPWAMAAVGGTNICI--RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLK 304
++ ++G T + + K D + +++L+ VT G P V ML Y + + L
Sbjct: 236 GIAFSAPSMG-TKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLP 294
Query: 305 LAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKA 364
K V V G+ P +++ E +G +V H +G+TE + A K ++ LP +
Sbjct: 295 HLKMV--VCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARL 352
Query: 365 KLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT 424
+ +QG + E+ + D +G DG T G + +RG + Y + + +
Sbjct: 353 DVLQKQGYPPFGV-EMKITDD-AGKELPWDGKTFGRLKVRGPAVAAAYYR---VDGEILD 407
Query: 425 DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484
DDG+F TGDV + + GY+ I DRSKDVI SGGE +SS+++E++ +P V EAAV+
Sbjct: 408 DDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVY 467
Query: 485 DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
W E P V LK G T +E+++Y G++ + +P V F+D +P T+TGKI K
Sbjct: 468 HPKWDERPLLIVQLKPG--ETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILK 525
Query: 545 FVLRE 549
LRE
Sbjct: 526 TALRE 530
|
Length = 542 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 1e-74
Identities = 151/540 (27%), Positives = 240/540 (44%), Gaps = 55/540 (10%)
Query: 13 PLTPLVFLERAATVYGDSPSII--YNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVV 70
L A+ +GD P++I T+++ +LA+ L + G +G VV ++
Sbjct: 5 LSLDSASLLFAS-EFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLL 63
Query: 71 SPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVS 130
SPN + AV A AV+ T N ++ ++ +KL L +
Sbjct: 64 SPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITT---SELAEKL-- 118
Query: 131 LFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEW 190
L P+VL+ DD + + I D F +P I+
Sbjct: 119 ---ASLALEPVVLLDSADDGSAA-------IDDLLFADE-------PEPPVVVIKQD--- 158
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP----VYLWTLPMFHSNGW 246
D L Y+SGTT KGV+ HR I V V L LPMFH G
Sbjct: 159 DVAALPYSSGTTGRSKGVMLTHRN-LIANVA-QLVAGEGPNFDREDVTLCVLPMFHIYGL 216
Query: 247 C-FPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHM-CGAPVVLNMLSNYRDPDKKPLK 304
A+ +G T + + +FD I ++ VTH+ P+VL ++ + P
Sbjct: 217 TVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKH---PIVDKYD 273
Query: 305 LAKPVHLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAE 362
L+ + + AP + R G ++ GYG+TE+ + C P E
Sbjct: 274 LSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMC---------PVPE 324
Query: 363 KAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKC 422
K G + E ++DP++G S + GE+ +RG +M GYL +P T +
Sbjct: 325 KDPKPGSVG-RLVPNVEAKIVDPETGESLPP--NQPGELWVRGPQVMKGYLNNPEATAET 381
Query: 423 MTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482
+ DGW +TGD+G DGYL I DR K++I G ++ E+E++L S+P + +AAV+
Sbjct: 382 IDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIP 441
Query: 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
PDE GE P AFV + GS+ +E E++++ ++ Y + VVF+D +PK+ +GKI
Sbjct: 442 YPDEEAGEIPMAFVVRQPGSEL--SEDEVMQFVAKQVAPYKKVRKVVFVDAIPKSPSGKI 499
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 2e-74
Identities = 130/364 (35%), Positives = 179/364 (49%), Gaps = 30/364 (8%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP- 249
D + YTSGTT PKGV+ H + A + V L LP+FH N +
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYSV 141
Query: 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSN-YRDPDKKPLKLAKP 308
+A VG T + + +F AS +D +R+HG T + +L PD + P
Sbjct: 142 YAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDR----DHP 197
Query: 309 VHLVTAGAPPPAAVLLRTES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
+ V GAP PAA+ E G K+ GYG+TETG +++ +
Sbjct: 198 LRFVF-GAPLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAPGDPAPPGSCG-------R 249
Query: 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR---GGCIMLGYLKDPIGTRKCMT 424
R GV EV ++D G +GE+V+R + GY P T K
Sbjct: 250 PRPGV------EVRIVDED-GREVPPG--EVGELVVRPRRPWAMFKGYYGMPEATAK-AW 299
Query: 425 DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484
+GWF+TGD G DG+L DR KD I GEN+SS EVE+ + ++PAV EAAVVA P
Sbjct: 300 RNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVP 359
Query: 485 DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
E + A V L+ G + ++E+CR RLP++MVP+ + F+DELPKT T KIQK
Sbjct: 360 SELGEDEVKAVVVLRPG--ETLDPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQK 417
Query: 545 FVLR 548
LR
Sbjct: 418 AELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 1e-73
Identities = 145/521 (27%), Positives = 221/521 (42%), Gaps = 53/521 (10%)
Query: 36 NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTIN 95
T++D + L+LA L +G+ +G VV+++SPN + A +++ N
Sbjct: 7 TGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN 66
Query: 96 TRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQ 155
++ L+ + KL+F D V+EA P ++++ D
Sbjct: 67 PSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPV---VRIIVLDSAPDGV---- 119
Query: 156 SHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDP----IVLNYTSGTTMSPKGVVHC 211
I D + RP D L Y+SGTT PKGV+
Sbjct: 120 ---LRIEDLLEPR---------LGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLS 167
Query: 212 HRGI---FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDAS 268
H+ I +TL + V L LP +H+ G A G T I + KFD+
Sbjct: 168 HKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSE 227
Query: 269 IIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTA---GAPPPAAV--L 323
LI ++ VT + P + L+ DK L L AP +
Sbjct: 228 TFLKLIEKYKVTSLFLVPPIAVALAKSPLVDKYDLS-----SLRVIFSGAAPLSKELQEE 282
Query: 324 LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVL 383
LR + GYG+TETG K G + E ++
Sbjct: 283 LRKRFPNTTIKQGYGMTETGPATTLTPP----------GDEKP-GSVG-RLVPNVEAKIV 330
Query: 384 DPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYL 443
D G S + GE+ ++G IM GYL +P T++ + +DGW +TGD+G DG
Sbjct: 331 DEDGGKSLGPN--ERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNF 388
Query: 444 EIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK 503
I DR K++I G + E+E+VL +P V +AAV+ PDE GE P A+V LK GSK
Sbjct: 389 YIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSK 448
Query: 504 SKPTEKEMIEYCRGRL-PHYMVPKTVVFMDELPKTSTGKIQ 543
TE+E+ +Y ++ + + VVF+DE+PK+ +GKI
Sbjct: 449 L--TEQEVKDYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 5e-73
Identities = 137/559 (24%), Positives = 220/559 (39%), Gaps = 81/559 (14%)
Query: 28 GDSPSIIYNNI-----TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82
D +II++ T+ D +LA++L +G +G V++ PN P
Sbjct: 24 PDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALL 83
Query: 83 AVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLV 142
A A+ ++ L A V+ + K++ D R K L+
Sbjct: 84 ATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIAD---DGTFRN--------GKEIALL 132
Query: 143 LISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEW-DPIVLNYTSGT 201
+D ++V + + Y+ V K +FE DP+ L YTSGT
Sbjct: 133 EDADAVLSSV--------VVVPRLGLWYDEAVEKASEKFE--FEPLPADDPLFLLYTSGT 182
Query: 202 TMSPKGVVHCHRGIFIVAVNTLSD--WSVPTQPVYLWTLP----MFHSNGWCFPWAMAAV 255
T PKG+VH H G ++V + + + + P A
Sbjct: 183 TGKPKGIVHSHGG-YLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLAS--- 238
Query: 256 GGTNICI---RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLV 312
G T + + +++ + ++ VT +P L L + L + L
Sbjct: 239 GATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLR--VLG 296
Query: 313 TAGAP-PPAAVLLRTESLGFKVSHGYGLTETGGIVVS--------CAWKRNWNLLPAAEK 363
+AG P P A +LG + YG TETG ++ + LP
Sbjct: 297 SAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRPPVKNGSSGLP----LP---- 348
Query: 364 AKLKARQGVKTTALTEVDVLDP-KSGVSAKRDGSTLGEIVLRG--GCIMLGYLKDPIGTR 420
G V +D + V GE+V+R + L Y DP +
Sbjct: 349 -------GY------AVRRVDDEGNPVPPGV-----GELVVRLPWPGMALTYWNDPERYK 390
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
+ W+ TGD DGY + RS DVI G+ + +E+ESVL ++PAV EAAV
Sbjct: 391 EAYF-GRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAV 449
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
V PD G+ AFV L G + +E+ + + + +P+ + F+DELPKT++G
Sbjct: 450 VGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASG 509
Query: 541 KIQKFVLREIAENMGSSSS 559
KIQ+ +LR+I S+
Sbjct: 510 KIQRRLLRKILHKGEDLST 528
|
Length = 528 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 1e-71
Identities = 164/586 (27%), Positives = 250/586 (42%), Gaps = 79/586 (13%)
Query: 6 PSPANSTPLTPLV------FLERAATVYGDSPSIIYNN--ITYTWSDTHHRCLQLASSLL 57
PS PL+ + + D +++ + + YTW +LA LL
Sbjct: 4 PSYYQGGGDKPLLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLL 63
Query: 58 SIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117
++G+ G V + +PN FA A+L IN A + L + V
Sbjct: 64 ALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVIC 123
Query: 118 -------DFHS--RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168
D+H+ + L+ P L L + A + F
Sbjct: 124 ADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPG---------FL 174
Query: 169 TYESLVAKGD---PE--FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI----FIVA 219
+ L A+G+ E E DPI + YTSGTT PKG H I + VA
Sbjct: 175 AWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVA 234
Query: 220 VNT-LSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA-----AVGGTNIC-IRKFDASIIFD 272
+ L++ PV P++H CF +A VG + FD
Sbjct: 235 ESLGLTEHDRLCVPV-----PLYH----CFGMVLANLGCMTVGACLVYPNEAFDPLATLQ 285
Query: 273 LIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT--ESLG 330
+ T + G P + ++ P + L+ + AGAP P V+ R E
Sbjct: 286 AVEEERCTALYGVPTMF--IAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHM 343
Query: 331 FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVS 390
+V YG+TET + + AA+ + + +T EV V+DP
Sbjct: 344 AEVQIAYGMTETSPVSLQTT---------AADDLERRVETVGRTQPHLEVKVVDP----- 389
Query: 391 AKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEI 445
DG+T+ GE+ RG +M GY +P T + + +DGW +TGD+ M GY+ I
Sbjct: 390 ---DGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRI 446
Query: 446 KDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK 505
RSKD+II GGEN+ E+E L+++PAV + V PDE +GE A+V L G +
Sbjct: 447 VGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAA- 505
Query: 506 PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551
+E+E+ E+C+ R+ H+ VP+ F+DE P T TGK+QKF +REI+
Sbjct: 506 -SEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREIS 550
|
Length = 558 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 1e-71
Identities = 177/587 (30%), Positives = 259/587 (44%), Gaps = 106/587 (18%)
Query: 19 FLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76
L+R A Y D +++Y + +T+ + + LA LL++GI +G V + +PNVP
Sbjct: 21 LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80
Query: 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSK-LVFVD-FHS---RALVREAV-- 129
FA A+L TIN + L K L+ D F A++ E
Sbjct: 81 WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPE 140
Query: 130 ----------SLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP 179
S P+L+ +I D+ HP + E L
Sbjct: 141 LATCEPGQLQSARLPELR----RVIFLGDEK-------HPG-----MLNFDELLALGRAV 184
Query: 180 EFEWIRPRTE----WDPIVLNYTSGTTMSPKGVVHCHRGI----FIVAVN---TLSDWSV 228
+ + R DPI + YTSGTT PKG HR I + + T D
Sbjct: 185 DDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLC 244
Query: 229 PTQPVYLWTLPMFHSNGWCFPWAMA-----AVGGTNICI-RKFDASIIFDLIRR------ 276
PV P++H CF + G T + FD +
Sbjct: 245 --IPV-----PLYH----CFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTAL 293
Query: 277 HGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT---AGAPPPAAVLLR-TESLGFK 332
+GV M A L PD L+ L T AG+P P V+ R + +
Sbjct: 294 YGVPTMFIA-----ELD---HPDFARFDLS---SLRTGIMAGSPCPIEVMKRVIDKMHMS 342
Query: 333 -VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKT--TAL--TEVDVLDPKS 387
V+ YG+TET VS + + L EK R V T AL EV ++DP++
Sbjct: 343 EVTIAYGMTETSP--VSTQTRTDDPL----EK-----R--VTTVGRALPHLEVKIVDPET 389
Query: 388 GVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKD 447
G + R G GE+ RG +M GY DP T + + DGW +TGD+ VM +GY+ I
Sbjct: 390 GETVPR-GEQ-GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVG 447
Query: 448 RSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPT 507
R KD+II GGEN+ E+E LY++P + + VV PDE +GE CA++ L+ G + T
Sbjct: 448 RIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPG--ATLT 505
Query: 508 EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554
E+++ ++CRG++ HY +P+ + F+DE P T TGKIQKF +RE+
Sbjct: 506 EEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEE 552
|
Length = 559 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 3e-69
Identities = 134/372 (36%), Positives = 183/372 (49%), Gaps = 42/372 (11%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250
DP ++ +TSGTT PKGV H+ + A N + L +P+FH +G
Sbjct: 3 DPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHG----- 57
Query: 251 AMAAV------GGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLK 304
+ ++ GG+ +C KF AS +D I ++ VT P + +L P
Sbjct: 58 LIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKP-NPGKP 116
Query: 305 LAKPVHLVTAGAPPPAAVLLRTES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
+ + +A AP P AVL R E G V YG+TE + S N LP
Sbjct: 117 PPRLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIAS-------NPLP---- 165
Query: 364 AKLKARQG-VKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPI 417
L + G V A EV +LD DG L GEIV+RG + GYL +P
Sbjct: 166 -PLVRKPGSVGRPAGVEVAILDD--------DGRPLPPGQEGEIVIRGPNVTAGYLNNPE 216
Query: 418 GTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477
R+ DGWF TGD+G + DGYL + R K++I GGE +S EVE VL +PAV E
Sbjct: 217 ANRE-AFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAE 275
Query: 478 AAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKT 537
A V PDE +GE A V L+ SK T +E+ ++ R RL + VPK ++F+D LPK
Sbjct: 276 AVVFGVPDELYGEEVAAAVVLRAD--SKVTIEELRDFARKRLAAFKVPKKILFVDALPKG 333
Query: 538 STGKIQKFVLRE 549
+TGKIQ+ L E
Sbjct: 334 ATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 230 bits (589), Expect = 5e-69
Identities = 164/530 (30%), Positives = 245/530 (46%), Gaps = 62/530 (11%)
Query: 29 DSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88
D +++Y + ++++ H R LQ A L + GI +G VV+++ N A EL FA +
Sbjct: 17 DRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76
Query: 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDD 148
AV IN RL A V+ +L +KL+ VD A L+ P +V+
Sbjct: 77 AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDA---------IVALETPKIVI----- 122
Query: 149 DAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGV 208
DAA + S +A+G E D + L YTSGTT PKGV
Sbjct: 123 DAAAQADS---------------RRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGV 167
Query: 209 VHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP-WAMAAVGGTNICI-RKFD 266
+H + + +++ + + L P++H + P A+ VGGT + I R+FD
Sbjct: 168 MHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGT-LRIHREFD 226
Query: 267 ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT 326
+ I RH +T APV+L+ + D D+ L + G P + +
Sbjct: 227 PEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDR--FDLDSLAWCIGGGEKTPESRIRDF 284
Query: 327 ESL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLD 384
+ + YGLTET L+ A + + G + A E+ + D
Sbjct: 285 TRVFTRARYIDAYGLTETCS---------GDTLMEAGREIEKIGSTG-RALAHVEIRIAD 334
Query: 385 PKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHS 439
G L GEI +RG + GY KDP T + D WF +GDVG +
Sbjct: 335 --------GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGD-WFRSGDVGYLDE 385
Query: 440 DGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLK 499
+G+L + DR KD+IISGGEN++S EVE V+Y P V EAAV+ D+ WGE A V L
Sbjct: 386 EGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLN 445
Query: 500 EGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
G+ T + + +CR RL + VP+ + DELP+ +GK+ K VLR+
Sbjct: 446 PGATL--TLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRD 493
|
Length = 497 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 6e-69
Identities = 151/542 (27%), Positives = 235/542 (43%), Gaps = 58/542 (10%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLL-SIGISRGHVVSVVSPNVPAL 77
++E+ A ++ D +II T+ H ++A+ L+ + + +G ++++S N
Sbjct: 7 WIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEY 66
Query: 78 YELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV--DFHSRALVREAVSLFPPD 135
L FA+ + +N RL + L+ + ++FV F + AL + VS
Sbjct: 67 IVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRV 126
Query: 136 LKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVL 195
+ L I D + + E ++
Sbjct: 127 ISITSLKEIED----------RKIDNFV----------------------EKNESASFII 154
Query: 196 NYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG---WCFPWAM 252
YTSGTT PKG V +F A+N + + LP+FH G + FP
Sbjct: 155 CYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF 214
Query: 253 AAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLV 312
A GG I RKF+ + +I +H VT + G P + L N + L
Sbjct: 215 A--GGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALIN--CSKFETTNLQSVRWFY 270
Query: 313 TAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV 372
GAP P ++ GF G+G+TET V + + E A+ K
Sbjct: 271 NGGAPCPEELMREFIDRGFLFGQGFGMTETSPTV----------FMLSEEDARRKVGSIG 320
Query: 373 KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTG 432
K + +++D K + +GE+++RG +M Y P T + + D GW TG
Sbjct: 321 KPVLFCDYELIDENKN---KVEVGEVGELLIRGPNVMKEYWNRPDATEETIQD-GWLCTG 376
Query: 433 DVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492
D+ + DG++ I R K++IISGGEN+ +EVE V+ V E AVV R WGE P
Sbjct: 377 DLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIP 436
Query: 493 CAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552
AF+ K S EK++IE+CR L Y +PK +VF+ ELPK +TGKIQK L +
Sbjct: 437 IAFIVKKSSSVL--IEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLK 494
Query: 553 NM 554
+
Sbjct: 495 SR 496
|
Length = 496 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 1e-67
Identities = 149/556 (26%), Positives = 234/556 (42%), Gaps = 101/556 (18%)
Query: 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN 73
LTP +R A + + T+ + H + +A L ++G+ +G V+++ N
Sbjct: 14 LTP----DRTAIEFEEK--------KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKN 61
Query: 74 VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFP 133
+ + A+ AV +NTRL + L + K + D
Sbjct: 62 GMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITD--------------- 106
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI 193
DD +A + + L+ E E +
Sbjct: 107 ------------DDFEAKLIPGI----------SVKFAELMNGPKEEAEIQEEFDLDEVA 144
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253
+ YTSGTT PKGV+ + + AV + + + +L +P+FH +G M
Sbjct: 145 TIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISG--LSILMR 202
Query: 254 AV--GGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAK---- 307
+V G + + KFDA I L++ GVT + VV ML L +
Sbjct: 203 SVIYGMRVVLVEKFDAEKINKLLQTGGVTII---SVVSTMLQRL---------LERLGEG 250
Query: 308 --PVHLVT---AGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAE 362
P G P P +L + + G V YG+TET +V+ + + L +A
Sbjct: 251 TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGSAG 310
Query: 363 K----AKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
K +LK + E GEIV++G + GYL
Sbjct: 311 KPLFPCELKIEKDGVVVPPFEE------------------GEIVVKGPNVTKGYLNREDA 352
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
TR+ DGWF TGD+G + +G+L + DR D+IISGGEN+ E+E VL S+P V EA
Sbjct: 353 TRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEA 411
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
VV PD+ WG+ P AFV + TE+E+ +C +L Y VPK F++ELP+ +
Sbjct: 412 GVVGVPDDKWGQVPVAFVVKSG----EVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNA 467
Query: 539 TGKIQKFVLREIAENM 554
+GK+ + L+++ E M
Sbjct: 468 SGKLLRHELKQLVEEM 483
|
Length = 483 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 7e-67
Identities = 162/529 (30%), Positives = 239/529 (45%), Gaps = 57/529 (10%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
+T+ + ++A L +G+ RG VVS PN L+ A AVLN +
Sbjct: 55 RFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIF 114
Query: 99 DARTVSLLLQHCQSKL-----VFVDFHSRALVREAVSLFP--PDLKPPPLVLISDDDDAA 151
R +S +L+H +SK+ F F A+ R L P P L+ V++ D A
Sbjct: 115 RERELSFMLKHAESKVLVVPKTFRGFDHAAMARR---LRPELPALRH---VVVVGGDGA- 167
Query: 152 VSSQSHHPNISDDQFFSTYESLVAKGDPE-FEWIRPRTEWDPIVLNYTSGTTMSPKGVVH 210
S + T P +RP + D L YTSGTT PKGV+H
Sbjct: 168 ---------DSFEALLITPAWEQEPDAPAILARLRPGPD-DVTQLIYTSGTTGEPKGVMH 217
Query: 211 CHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA-AVGGTNICIRKFDASI 269
+ V + V L PM H G+ + M +G T + +D +
Sbjct: 218 TANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPAR 277
Query: 270 IFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR-TES 328
+LIR GVT + L L+ +P+ + + AGAP P A++ R +
Sbjct: 278 AAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRT--FLCAGAPIPGALVERARAA 335
Query: 329 LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSG 388
LG K+ +G+TE G + ++ + G + EV V+D
Sbjct: 336 LGAKIVSAWGMTENGAVTLTK---------LDDPDERASTTDGCPLPGV-EVRVVDA--- 382
Query: 389 VSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYL 443
DG+ L G + +RG GYLK P DGWF TGD+ + +DGY+
Sbjct: 383 -----DGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNG--TDADGWFDTGDLARIDADGYI 435
Query: 444 EIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK 503
I RSKDVII GGEN+ VE+E++LY +PA+ + A+VA PDE GE CAFV + G
Sbjct: 436 RISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQS 495
Query: 504 SKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551
+EM+E+ + ++ +P+ +V D LP+T +GKIQKF LRE+
Sbjct: 496 L--DFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREML 542
|
Length = 547 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 2e-65
Identities = 114/355 (32%), Positives = 167/355 (47%), Gaps = 33/355 (9%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVG 256
+TSG+T PK VVH A + + + +L +LP+FH +G G
Sbjct: 84 FTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGLAIVMRSLLAG 143
Query: 257 GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY--RDPDKKPLKLAKPVHLVTA 314
G + KFDA I + + HGVTH +V L + L ++
Sbjct: 144 GALVLPDKFDAEAIAEALENHGVTH---ISLVPTQLQRLLESLGARWLSSLR---AVLLG 197
Query: 315 GAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKT 374
GAP P ++L + G + YG+TET V + L P AKL
Sbjct: 198 GAPIPPSLLEQARQRGIPLYPTYGMTETASQVAT--------LKPDDFLAKLG------- 242
Query: 375 TALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDV 434
V P G + GEI++RG + LGYL G + +DGWF+TGD+
Sbjct: 243 ------SVGKPLPGRELRIVNPQDGEILVRGPSLFLGYLPQG-GLTPPLDEDGWFHTGDL 295
Query: 435 GVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCA 494
G + ++GYL + R D+IISGGEN+ E+E+VL +PAV EAAVV PD+ WG+ P A
Sbjct: 296 GYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVA 355
Query: 495 FVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
FV + + +E+ + +L Y PK + ELP+ ++GKI + LR+
Sbjct: 356 FV---VPNDDPVSVEELQAFLADKLAKYKRPKRWYPLPELPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 4e-65
Identities = 119/359 (33%), Positives = 165/359 (45%), Gaps = 22/359 (6%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250
DP ++ YTSGTT PKGVV H + A + W V L LP+ H +G
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNAL 148
Query: 251 AMA-AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV 309
G + + +FD L +T G P + L + + D A+ +
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAARNL 208
Query: 310 HLVTAG-APPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
L +G A P VL R E G + YG+TET G+ +S P +
Sbjct: 209 RLFVSGSAALPVPVLERWEERTGHTLLERYGMTET-GMALSN---------PLDG----E 254
Query: 368 ARQGVKTTALTEVDV-LDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDD 426
R G L V+V + + G G GEI +RG + Y P T + T+D
Sbjct: 255 RRPGTVGLPLPGVEVRIVDEDGGEPLAAGEV-GEIQVRGPNVFSEYWNKPEATAEAFTED 313
Query: 427 GWFYTGDVGVMHSDGYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEAAVVARPD 485
GWF TGDVGV+ DGY I R D II SGG +S++E+E L +P V E AV+ PD
Sbjct: 314 GWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPD 373
Query: 486 EFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
WGE A V + G + T E+ + R +L Y +PK V+ +DELP+ + GK+QK
Sbjct: 374 PDWGEAVVAVVVPEAG--AALTLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 4e-65
Identities = 160/568 (28%), Positives = 247/568 (43%), Gaps = 64/568 (11%)
Query: 11 STPLTPLVF-LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLS-IGISRGHVVS 68
+ P T L LE +A Y D +I++ ++ + +LA L G+ +G V
Sbjct: 6 TLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVL 65
Query: 69 VVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV--DFHSR---- 122
+ N P ++A+ A AV+ +N ++ + +++ V + +
Sbjct: 66 LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPA 125
Query: 123 ----ALVREAVSLF------PPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172
L V+ + P++ P + A + +
Sbjct: 126 VGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWK---EALAAGLAP 182
Query: 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS-VPTQ 231
P+ D VL YTSGTT PKG +H HR + AV + WS +
Sbjct: 183 PPHTAGPD----------DLAVLPYTSGTTGVPKGCMHTHRTVMANAVGS-VLWSNSTPE 231
Query: 232 PVYLWTLPMFHSNGWCFPWAMAA---VGGTNICIRKFDASIIFDLIRRHGVTHMCGAP-V 287
V L LP+FH G +M A G T + + ++D LI R+ VTH P +
Sbjct: 232 SVVLAVLPLFHVTG--MVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTM 289
Query: 288 VLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIV 346
V++ L++ P L+ ++ GA P AV R E G GYGLTET
Sbjct: 290 VVDFLAS---PGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQT 346
Query: 347 VSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVD--VLDPKSGVSAKRDGSTLGEIVLR 404
S N P + KL+ G+ VD V+DP++ + +GEIV+
Sbjct: 347 HS-------N--PPD-RPKLQC-LGI---PTFGVDARVIDPETL--EELPPGEVGEIVVH 390
Query: 405 GGCIMLGYLKDPIGTRKC-MTDDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLS 461
G + GY P T + + DG +F TGD+G M +GY I DR K +I + G +
Sbjct: 391 GPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVW 450
Query: 462 SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH 521
EVE++LY +PA+ EA V+A PD GET A V L+ ++ K TE+E+I + R +
Sbjct: 451 PAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAA 510
Query: 522 YMVPKTVVFMDELPKTSTGKIQKFVLRE 549
Y P+ V F+D LPK+ +GKI L+E
Sbjct: 511 YKYPRIVEFVDSLPKSGSGKILWRQLQE 538
|
Length = 546 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 2e-63
Identities = 123/365 (33%), Positives = 177/365 (48%), Gaps = 27/365 (7%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQ-PVYLWTLPMFHSNGWCFP 249
D V+ YTSGTT PKG +H HR + A + WS T V L LP+FH G
Sbjct: 85 DVAVIPYTSGTTGLPKGCMHTHRTVLATAA-ASAAWSGLTPDSVLLAFLPLFHVAG--MQ 141
Query: 250 WAMAA---VGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLA 306
+M A G T + + ++D I R+ VTH ++ L P L+
Sbjct: 142 GSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLA--HPRFADYDLS 199
Query: 307 KPVHLVTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAK 365
+ GA P AV R ++L G GYGLTET +C ++ K
Sbjct: 200 SLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTET----HTC------THFNPPDRPK 249
Query: 366 LKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD 425
+ G+ T+ V+DP++G + GEIV+RG + GY P T + +
Sbjct: 250 PQC-LGIPVFG-TDARVIDPETG--EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIE 305
Query: 426 ---DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482
+F TGD+G + +GY DR K +I G + EVE++LY +PAV E V+
Sbjct: 306 LDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIG 365
Query: 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
RPD GE AFV LK + K TE+++IE+CR R+ Y P+ + F+DELPKT++GK+
Sbjct: 366 RPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRIIEFVDELPKTASGKV 425
Query: 543 QKFVL 547
+L
Sbjct: 426 LWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (548), Expect = 9e-63
Identities = 158/565 (27%), Positives = 242/565 (42%), Gaps = 72/565 (12%)
Query: 8 PANSTPLTPLV--------FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSI 59
+ + PL L R A Y D P +++ +T+++ A +L +
Sbjct: 7 GLAARAVDPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAA 66
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
G+ RG V+++ N ++ + A+ INT L + +L++ ++L+ V+
Sbjct: 67 GVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEA 126
Query: 120 HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP 179
A + A P P P V + D ++S +ST L P
Sbjct: 127 ALLAALEAA----DPGDLPLPAVWLLDAP----------ASVSVPAGWST-APLPPLDAP 171
Query: 180 -EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL 238
++P D + YTSGTT KGV H + N+ D + V TL
Sbjct: 172 APAAAVQPG---DTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTL 228
Query: 239 PMFHSNGWCFPWAMAA------VGGTNICIRKFDASIIFDLIRRHG--VTHMCGAPVVLN 290
P+FH+N A+ A G T + +F AS + +RRHG VT++ GA V +
Sbjct: 229 PLFHTN------ALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSIL 282
Query: 291 MLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCA 350
+ R+ D+ A V + P A E G + GYG TET ++
Sbjct: 283 LSQPARESDR-----AHRVRVALGPGVPAALHAAFRERFGVDLLDGYGSTETNFVI---- 333
Query: 351 WKRNWNLLPAAEKAKL--KARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRG--- 405
+ +++ + G + + E D P DG GE++LR
Sbjct: 334 -----AVTHGSQRPGSMGRLAPGFEARVVDEHDQELP--------DGEP-GELLLRADEP 379
Query: 406 GCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465
GY P T + + WF+TGD V +DG+ DR KD I GEN+SS EV
Sbjct: 380 FAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEV 438
Query: 466 ESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVP 525
E VL S+PAV AAV P E + A V L++G+ +P ++ +C RL ++ VP
Sbjct: 439 EQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPV--ALVRHCEPRLAYFAVP 496
Query: 526 KTVVFMDELPKTSTGKIQKFVLREI 550
+ V F+ LPKT GK+QKFVLRE
Sbjct: 497 RYVEFVAALPKTENGKVQKFVLREQ 521
|
Length = 542 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 2e-61
Identities = 145/533 (27%), Positives = 221/533 (41%), Gaps = 55/533 (10%)
Query: 27 YGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPF 86
GD ++ Y++ + T+ + + ++L +GI R + V ++ + P +
Sbjct: 18 RGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIK 77
Query: 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISD 146
AV INT L L +++++ + +++ A+ P L+ +I
Sbjct: 78 IGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDP-HLR----HVIVV 132
Query: 147 DDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPK 206
+ Y L+A E E + D Y+SG+T PK
Sbjct: 133 GGAGPGALS--------------YAQLIATAAEELEAAATSAD-DMAFWLYSSGSTGRPK 177
Query: 207 GVVHCHRGIFIVAV----NTLSDWSVPTQPVYLWTLPMFHS----NGWCFPWAMAAVGGT 258
GVVH H + + A N L + V +F + NG FP + VG T
Sbjct: 178 GVVHLHHDMLVTAEAYAKNVLG---ITEDDVVFSAAKLFFAYGLGNGLYFPLS---VGAT 231
Query: 259 NICIRKF-DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAP 317
+ + + +F I R+ T G P + + P+K L+ V+AG
Sbjct: 232 TVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAA--PEKPERDLSSLRLCVSAGEA 289
Query: 318 PPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTA 376
PA + R E G ++ G G TE I +S N A +K K
Sbjct: 290 LPAEIGYRWKELFGLEILDGIGSTEMLHIFLS-------NRPGA-----VKYGTSGKPVP 337
Query: 377 LTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGV 436
EV ++D A DG +GE+ +RG GY TR+ W TGD
Sbjct: 338 GYEVKLVDEDGEEVA--DG-EIGELWVRGDSSAAGYWNRREKTRETFVG-EWTRTGDKYY 393
Query: 437 MHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFV 496
DGY RS D++ G +S EVE L +PAV EAAVV DE P AFV
Sbjct: 394 RDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFV 453
Query: 497 SLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548
LK+G + S E E+ ++ + +L Y P+ + F+DELPKT+TGKIQ+F LR
Sbjct: 454 VLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 5e-61
Identities = 147/538 (27%), Positives = 225/538 (41%), Gaps = 83/538 (15%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
T+ + R +LA L ++G+ G VV+++ N P +E+++A + IN L
Sbjct: 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHL 70
Query: 99 DARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHH 158
A ++ ++ +K++ V E + P + PL+L+ V
Sbjct: 71 TAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGV---PLLLV---VAGPVPG---- 120
Query: 159 PNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIV 218
F +YE +A P+ D + Y+SGTT PKG+ G+
Sbjct: 121 --------FRSYEEALA-AQPDTPIADETAGAD---MLYSSGTTGRPKGIKRPLPGLDPD 168
Query: 219 AVNTLSDWSVPTQP------VYLWTLPMFHSNGWCFP--WAMAA--VGGTNICIRKFDAS 268
+ + VYL P++H+ P + M+A +GGT + + KFDA
Sbjct: 169 EAPGMMLALLGFGMYGGPDSVYLSPAPLYHTA----PLRFGMSALALGGTVVVMEKFDAE 224
Query: 269 IIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV----------HLVTAGAPP 318
LI R+ VTH P + + LKL + V + A AP
Sbjct: 225 EALALIERYRVTHSQLVPTMFVRM----------LKLPEEVRARYDVSSLRVAIHAAAPC 274
Query: 319 PAAVLLRT-ESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTAL 377
P V + G + Y +E GG+ V + +W L V L
Sbjct: 275 PVEVKRAMIDWWGPIIHEYYASSEGGGVTVITS--EDW----------LAHPGSVGKAVL 322
Query: 378 TEVDVLDPKSGVSAKRDGS-----TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTG 432
EV +LD DG+ +G + Y DP T GW G
Sbjct: 323 GEVRILDE--------DGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVG 374
Query: 433 DVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492
DVG + DGYL + DR D+IISGG N+ E+E++L ++P V + AV PDE GE
Sbjct: 375 DVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERV 434
Query: 493 CAFVSLKEGSKSKP-TEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
A V +G+ + E+I + RGRL HY P+++ F DELP+T TGK+ K LR+
Sbjct: 435 KAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRD 492
|
Length = 502 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 8e-60
Identities = 136/506 (26%), Positives = 209/506 (41%), Gaps = 75/506 (14%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDA 100
TW D LA +L + GI G V++V N + L A A + +NTRL
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 101 RTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160
+ L+ +L+ D L+ + D A S
Sbjct: 61 NERTNQLEDLDVQLLLTD-----------------------SLLEEKDFQADS------- 90
Query: 161 ISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVA 219
+ + YE SL A + + L +TSGTT PK V H R + A
Sbjct: 91 LDRIEAAGRYETSLSASFNMD----------QIATLMFTSGTTGKPKAVPHTFRNHYASA 140
Query: 220 VNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGV 279
V + + +L +LP++H +G + G T + KF+ + ++I V
Sbjct: 141 VGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ--LLEMIANERV 198
Query: 280 THMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGL 339
TH +V L+ D L K ++ G+ PA ++ + G + YG+
Sbjct: 199 TH---ISLVPTQLNRLLDEGGHNENLRK---ILLGGSAIPAPLIEEAQQYGLPIYLSYGM 252
Query: 340 TETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST-L 398
TET V A L AR +V + K D
Sbjct: 253 TETCSQVT------------TATPEMLHAR--------PDVGRPLAGREIKIKVDNKEGH 292
Query: 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGE 458
GEI+++G +M GYL GWF TGD+G + +G+L + R D+IISGGE
Sbjct: 293 GEIMVKGANLMKGYL-YQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGE 351
Query: 459 NLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR 518
N+ E+E+VLY +P + EA VV +PD WG+ P A++ S+S ++ ++I Y +
Sbjct: 352 NIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV----SESDISQAKLIAYLTEK 407
Query: 519 LPHYMVPKTVVFMDELPKTSTGKIQK 544
L Y VP +DELP ++GKI +
Sbjct: 408 LAKYKVPIAFEKLDELPYNASGKILR 433
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 3e-59
Identities = 140/540 (25%), Positives = 208/540 (38%), Gaps = 95/540 (17%)
Query: 20 LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79
L A + D +++ T+ + +LA+ LL++GI G V V PNV
Sbjct: 21 LAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVI 80
Query: 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVR--EAVSLFPPDLK 137
L+FA+ +L A V L H ++ R EA + D
Sbjct: 81 LYFAL-----------FKLGAIPVLALPAHRAHEI-------GHFARQSEAKAYIIAD-- 120
Query: 138 PPPLVLISDDDDA-AVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLN 196
D A A P D +
Sbjct: 121 ----RFSGFDYAALARELLEELP-------------------------------DVALFQ 145
Query: 197 YTSGTTMSPKGV--VHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFH----SNGWCFPW 250
+ GTT PK + H A VYL LP H S+
Sbjct: 146 LSGGTTGLPKLIPRTHNDYLYSARASAEACGLD--PGTVYLAVLPAAHNFTLSSPGLLGA 203
Query: 251 AMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY---RDPDKKPLKLAK 307
+A GGT + + F LI R VTH P +LN+ D L++
Sbjct: 204 LLA--GGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRV-- 259
Query: 308 PVHLVTAGAPPPAAVLLRTES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKL 366
+ GAP + R E LG + +G+ E G+V N + +
Sbjct: 260 ---IQVGGAPLSPELARRVEERLGCPLQQVFGMAE--GLV---------NYTRLDDPPDV 305
Query: 367 KAR-QGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD 425
R QG + E+ ++D + G +GE++ RG + GY + P + TD
Sbjct: 306 IMRTQGRPISPADEIRIVDDQGEPVP--PG-EVGELLTRGPYTIRGYYRAPEHNARAFTD 362
Query: 426 DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485
DG++ TGD+ + +DGY + R KD I GGE +S E+E++L S+PAV +AAVV PD
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPD 422
Query: 486 EFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQK 544
E GE CAFV + G + PT E+ + R + L + +P + +D LP T GK+ K
Sbjct: 423 EVLGERICAFVVPRGG--AAPTLAELRAFLREQGLAKFKLPDRLEVVDSLPLTPVGKVDK 480
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 4e-59
Identities = 160/599 (26%), Positives = 245/599 (40%), Gaps = 100/599 (16%)
Query: 6 PSPANSTPLTPLVFLERAATVYGDSPSIIY--------NNITYTWSDTHHRCLQLASSLL 57
P A P + L RAA + D+P++ + T+T+++ + A+ L
Sbjct: 17 PLAARDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLH 76
Query: 58 SIGISRGHVVSVVSPNVPALYELHFAV--PFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115
S+G+ G VV+ + PN+P E HFA+ AA + N IN L+ ++ LL+ +K++
Sbjct: 77 SLGVGPGDVVAFLLPNLP---ETHFALWGGEAAGIANPINPLLEPEQIAELLRAAGAKVL 133
Query: 116 -----FVDF----------HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160
F + +R V + P P L + + H
Sbjct: 134 VTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLA-----VPLIRRKAHAR 188
Query: 161 ISDDQFFSTYESLVAKG-DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVA 219
I D +++ +A+ RP D +T GTT PK H H A
Sbjct: 189 ILD------FDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANA 242
Query: 220 --VNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAV--GGTNI-----------CIRK 264
L P LP+FH N +A + G + I
Sbjct: 243 WLGALLLG-LGPGD-TVFCGLPLFHVNA-LLVTGLAPLARGAHVVLATPQGYRGPGVIAN 299
Query: 265 FDASIIFDLIRRHGVTHMCGAPVVLNMLSNY--RDPDKKPLKLAKPVHLVTAGAPPPAAV 322
F + ++ R+ + + G P V L D L+ A + AP P V
Sbjct: 300 F-----WKIVERYRINFLSGVPTVYAALLQVPVDGHDISSLRYA-----LCGAAPLPVEV 349
Query: 323 LLRTES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA------RQGVKTT 375
R E+ G ++ GYGLTE +C N P + ++ + Q V+
Sbjct: 350 FRRFEAATGVRIVEGYGLTEA-----TCVSSVN----PPDGERRIGSVGLRLPYQRVR-- 398
Query: 376 ALTEVDVLDPKSGVSAKRDGST--LGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGD 433
V +LD RD + +G + + G + GYL + + +DGW TGD
Sbjct: 399 ----VVILDDAGRYL--RDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLWLEDGWLNTGD 451
Query: 434 VGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPC 493
+G + +DGY + R+KD+II GG N+ +E L +PAV AA V RPD GE P
Sbjct: 452 LGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPV 511
Query: 494 AFVSLKEGSKSKPTEKEMIEYCRGRLPH-YMVPKTVVFMDELPKTSTGKIQKFVLREIA 551
A+V LK G+ + TE E++ + R + VPK V +D LPKT+ GKI K LR A
Sbjct: 512 AYVQLKPGASA--TEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDA 568
|
Length = 632 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-58
Identities = 159/522 (30%), Positives = 224/522 (42%), Gaps = 49/522 (9%)
Query: 40 YTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLD 99
+++ + R ++A L +G+ RG VVS PN L+ A AVLN +
Sbjct: 54 FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR 113
Query: 100 ARTVSLLLQHCQSKLV-----FVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSS 154
R +S +L H SK+ F F A+ RE L V++ D D
Sbjct: 114 ERELSFMLNHADSKVFVVPSVFRGFDHAAMARE----LQSKLPALRQVVVIDGD------ 163
Query: 155 QSHHPNISDDQFFSTYESLVAKGDPEFEWI--RPRTEWDPIV-LNYTSGTTMSPKGVVHC 211
DD F + P+ I PR D + L YTSGTT PKGV+H
Sbjct: 164 -------GDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHT 216
Query: 212 HRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAV-GGTNICIRKFDASII 270
+F + V L PM H G+ + M + T + ++ +
Sbjct: 217 ANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARA 276
Query: 271 FDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT-ESL 329
+LIR GVT + L L P+ + AGAP P ++ R E L
Sbjct: 277 AELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFT--FLCAGAPIPGILVERAWELL 334
Query: 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGV 389
G + +G+TE G + V+ P K G + EV V+D
Sbjct: 335 GALIVSAWGMTENGAVTVT---------EPDDALEKASTTDGRPLPGV-EVKVID---AN 381
Query: 390 SAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD-DGWFYTGDVGVMHSDGYLEIKDR 448
AK G +++RG GYLK P TD +GWF TGD+ ++GY+ I R
Sbjct: 382 GAKLSQGETGRLLVRGCSNFGGYLKRP---HLNSTDAEGWFDTGDLAFQDAEGYIRINGR 438
Query: 449 SKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE 508
SKDVII GGEN+ VE+E++LY +PAV + A+VA PDE GE CA V K G
Sbjct: 439 SKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTL--DF 496
Query: 509 KEMIEYC-RGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
M+ + ++ +P+ + +D LP T GKIQKF LRE
Sbjct: 497 AAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLRE 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 4e-58
Identities = 152/542 (28%), Positives = 242/542 (44%), Gaps = 68/542 (12%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
+YT+S H +LA+ LL+ GI G V+ P ++ A AV +
Sbjct: 49 SYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSW 108
Query: 99 DARTVSLLLQHCQSKLVFVD--FHSRALVREAVSLFP--PDLKPPPLVLISDDDDAAVSS 154
+ +L CQ+K+ F F V + L P L+ +V + D A +
Sbjct: 109 REAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQ--IVGV---DKLAPA- 162
Query: 155 QSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI--VLNYTSGTTMSPKGVVHCH 212
++S Q + YE L T D + VL +TSGT PKGV+ H
Sbjct: 163 ---TSSLSLSQIIADYEPLTTA---------ITTHGDELAAVL-FTSGTEGLPKGVMLTH 209
Query: 213 RGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAA---VGGTNICIRKFDASI 269
I + ++ Q V++ P+ H+ G F + A +G ++ + F
Sbjct: 210 NNILASERAYCARLNLTWQDVFMMPAPLGHATG--FLHGVTAPFLIGARSVLLDIFTPDA 267
Query: 270 IFDLIRRHGVTHMCGA-PVVLNMLSNYRD--PDKKPLKLAKPVHLVTAGAPPPAAVLLRT 326
L+ + T M GA P + ++L+ D L+ + G P V
Sbjct: 268 CLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRF-----FLCGGTTIPKKVAREC 322
Query: 327 ESLGFKVSHGYGLTETGGIVV-----SCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVD 381
+ G K+ YG TE+ V + + + AA GV E+
Sbjct: 323 QQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAA---------GV------EIK 367
Query: 382 VLDPKSGVSAKRD--GSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHS 439
V+D A++ GE RG + +GYL +P T + + ++GW+Y+GD+ M
Sbjct: 368 VVD-----EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDE 422
Query: 440 DGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLK 499
GY++I R KD+I+ GGEN+SS EVE +L +P +++A VVA PDE GE CA+V LK
Sbjct: 423 AGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLK 482
Query: 500 EGSKSKPTEKEMIEY-CRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR-EIAENMGSS 557
S T +E++ + R R+ Y P+ +V +D+LP+T++GKIQKF+LR +I +
Sbjct: 483 APHHS-LTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQD 541
Query: 558 SS 559
Sbjct: 542 VC 543
|
Length = 547 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-57
Identities = 157/571 (27%), Positives = 253/571 (44%), Gaps = 60/571 (10%)
Query: 13 PLTPLVFLERAATVYGDSPSIIYNNI---TYTWSDTHHRCLQLASSLL-SIGISRGHVVS 68
PL+ LE +TV+GD+ + T++ R LA +L +GI+ V
Sbjct: 9 PLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVG 68
Query: 69 VVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREA 128
+ N E+ FAV AV N +N +L + ++ H + +++ D L +
Sbjct: 69 SMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVAD---PRLAEQL 125
Query: 129 VSLFPPDLKPPPLVLISDDD-DAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPR 187
+ +V I D D+A + + YE+L+ ++W P
Sbjct: 126 GEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYS------YEALLDGRSTVYDW--PE 177
Query: 188 T-EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN--TLSDWSVPTQPVYLWTLPMFHSN 244
E + Y++GTT +PKGVV+ HR +++ +++ T +V +L +P++H
Sbjct: 178 LDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVL 237
Query: 245 GWCFPWAMAAVGGTNICIRKFDAS------IIFDLIRRHGVTHMCGAPVV-LNMLSNYRD 297
W P A A + GT + D S II + R V H G P + + ++ +Y
Sbjct: 238 SWGVPLA-AFMSGTPLVFPGPDLSAPTLAKIIATAMPR--VAH--GVPTLWIQLMVHYL- 291
Query: 298 PDKKPLKLAKPVHLVTAGAP-PPAAVLLRTESLGFKVSHGYGLTETGGI-VVSCAWKRNW 355
K P + + G+ PP + E G V H +G+TET + V+ R
Sbjct: 292 --KNPPERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVA----RPP 345
Query: 356 NLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKD 415
+ + + + QG +L V D + S R+ GEI +RG + Y
Sbjct: 346 SGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNE---GEIQVRGNWVTASYYHS 402
Query: 416 PIGT----------------RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGEN 459
P T DGW TGDVG + DG+L I DR++DVI SGGE
Sbjct: 403 PTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEW 462
Query: 460 LSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEG-SKSKPTEKEMIEYCRGR 518
+ S ++E+ + + P V E AV+ PD+ WGE P A L G ++ T + + + R R
Sbjct: 463 IYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDR 522
Query: 519 LPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
LP++M+P+ F+DE+ KTS GK K LR+
Sbjct: 523 LPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553
|
Length = 576 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 5e-57
Identities = 120/380 (31%), Positives = 170/380 (44%), Gaps = 46/380 (12%)
Query: 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL--PMFHSNG 245
+ DP +L +TSGTT PK V+H H + + T + W WT+ P +
Sbjct: 79 SADDPALLYFTSGTTGLPKMVLHTH-SYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGA 137
Query: 246 WC---FPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKP 302
W PW + A R+FDA +L+ R+GVT C P ML D
Sbjct: 138 WSSLFAPWLLGAAVFVYH-GRRFDAERTLELLERYGVTTFCAPPTAYRML---LQQDLSS 193
Query: 303 LKLAKPVHLVTAGAP-PPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAA 361
+ H+V+AG P P + + G + GYG TETG +V +
Sbjct: 194 YDFSHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPG---------- 243
Query: 362 EKAKLKARQGVKTTALT--EVDVLDPKSGVSAKRDGSTL-----GEIVLRGGC----IML 410
++ + G V ++D +G+ L G+I +R +
Sbjct: 244 ----MEVKPGSMGRPAPGYRVAIID--------DEGNELPPGEEGDIAVRVKPRPPGLFR 291
Query: 411 GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470
GYLKDP T + D W+ TGD + DGY R+ DVI S G + EVES L
Sbjct: 292 GYLKDPEKTEATIRGD-WYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALI 350
Query: 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVV 529
+PAV EAAVV PD GE AFV L G + S+ KE+ E+ + R Y P+ +
Sbjct: 351 EHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIE 410
Query: 530 FMDELPKTSTGKIQKFVLRE 549
F++ELPKT +GKI++ LR
Sbjct: 411 FVEELPKTVSGKIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 8e-57
Identities = 142/508 (27%), Positives = 211/508 (41%), Gaps = 69/508 (13%)
Query: 51 QLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHC 110
+LA+ L G G ++V++ N L LHFA A+ +N RL A + LLQ
Sbjct: 34 RLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDA 93
Query: 111 QSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170
+ +L+ D A + L S+ + P
Sbjct: 94 EPRLLLGDDAVAAGRTDVEDL----------------AAFIASADALEP----------- 126
Query: 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT 230
+ PE R ++L +TSGT+ PKGV+ R + A N V
Sbjct: 127 -ADTPSIPPE----RVS-----LIL-FTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDA 175
Query: 231 QPVYLWTLPMFHSNGWCFPW-AMAAVGGTNICIRKFDASIIFDLIRRH-----GVTHMCG 284
+L PMFH G + AVGG+ + F+ + R G+TH
Sbjct: 176 HSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPK---RTLGRLGDPALGITHYFC 232
Query: 285 APVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETG- 343
P + P L L T GAP A +L G + G+G++E G
Sbjct: 233 VPQMAQAFRA--QPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGT 290
Query: 344 --GIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401
G+ V C R A A + V+T + + D +GV GE+
Sbjct: 291 VFGMSVDCDVIRA-----KAGAAGIPT-PTVQTR-VVDDQGNDCPAGVP--------GEL 335
Query: 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLS 461
+LRG + GY + P T + T DGWF TGD+ +DG+ + DR KD+ ISGGEN+
Sbjct: 336 LLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVY 395
Query: 462 SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH 521
E+E+VL +P + E AVV D WGE + +G+ + + + RL
Sbjct: 396 PAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDL--ERIRSHLSTRLAK 453
Query: 522 YMVPKTVVFMDELPKTSTGKIQKFVLRE 549
Y VPK + +D LP+T++GK+QK LR+
Sbjct: 454 YKVPKHLRLVDALPRTASGKLQKARLRD 481
|
Length = 488 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 7e-56
Identities = 108/370 (29%), Positives = 161/370 (43%), Gaps = 34/370 (9%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250
D + YTSG+T PKGV+ HR + A + + L LP G
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYG-LSQL 61
Query: 251 AMA-AVGGTNICIRKFD-ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKP 308
A VGGT + +F + + + +T G P L ++
Sbjct: 62 LTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFP---S 118
Query: 309 VHLVT--AGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAK 365
+ +T GA P +L + K+ YGLTE R+ L P +
Sbjct: 119 LRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEA---------FRSTYLPPE----E 165
Query: 366 LKARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKC- 422
L R A+ E+ V+D A + +GE+V RG +M GY DP T +
Sbjct: 166 LDRRPDSIGKAIPNVELWVVDEDGNRCAPGE---VGELVHRGANVMKGYWNDPEATAERL 222
Query: 423 ----MTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
+ + YTGD+ M +GYL R D+I + G +S E+E V+ ++P V EA
Sbjct: 223 RPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEA 282
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AV+ PD G+ A V +G EKE++++CR LP+YMVP +VF+D LPK +
Sbjct: 283 AVIGVPDPLLGQAIVAVVVSADGESL--DEKELLKHCRKHLPNYMVPAEIVFVDSLPKNA 340
Query: 539 TGKIQKFVLR 548
GK+ + LR
Sbjct: 341 NGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 195 bits (496), Expect = 4e-55
Identities = 166/556 (29%), Positives = 260/556 (46%), Gaps = 51/556 (9%)
Query: 16 PL-VFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNV 74
PL ++E+ A+ Y + ++ + T+S H + + A+ L +G+ +G V+++ PN
Sbjct: 25 PLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNC 84
Query: 75 PALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVF-VDF--------HSRALV 125
P ++ A ++ N R + L +K++ +D S +
Sbjct: 85 PQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKI 144
Query: 126 REAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN----ISDDQFFSTYESLVAKGDPEF 181
+ D P P L+ Q N +S+ + + S+ + +
Sbjct: 145 EHVIVTRIADFLPFPKNLLYP------FVQKKQSNLVVKVSESETIHLWNSVEKEVNTGV 198
Query: 182 EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS--DW---SVPTQPVYLW 236
E + E D +L YT GTT PKGV+ H+ + NTL W + V L
Sbjct: 199 E-VPCDPENDLALLQYTGGTTGFPKGVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLG 254
Query: 237 TLPMFHSNGWCFPWAMAAVGGTN-ICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY 295
LP FH G ++ + G + I KFD ++F+ I++H VT GAP + L N
Sbjct: 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN- 313
Query: 296 RDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVS-CAWKR 353
P K ++ ++ AP P V + E++ G K+ GYGLTE+ + S W++
Sbjct: 314 -SPLLKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEK 372
Query: 354 NWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413
++ GV TE ++ ++G A G +GEIV++G IM GY
Sbjct: 373 -----------RVPGSIGVPWPD-TEAMIMSLETG-EALPPGE-IGEIVVKGPQIMKGYW 418
Query: 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNP 473
P T + DGW +TGDVG M DG+ +KDR KD+I++ G N+ EVE VLY +
Sbjct: 419 NKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHE 477
Query: 474 AVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDE 533
V E + PD + GET AFV LKEG++ +E+E+ ++ R L Y VPK F DE
Sbjct: 478 KVQEVVTIGVPDPYRGETVKAFVVLKEGTEC--SEEELNQFARKYLAAYKVPKVYEFRDE 535
Query: 534 LPKTSTGKIQKFVLRE 549
LPKT+ GKI + VL E
Sbjct: 536 LPKTTVGKILRRVLIE 551
|
Length = 563 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 2e-54
Identities = 166/566 (29%), Positives = 247/566 (43%), Gaps = 86/566 (15%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
FL +AA + D ++++ + ++TW + R LA++L + G+ +G + V S N ++
Sbjct: 12 FLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMF 71
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV--DF--HSRALVREAVSLFPP 134
E FA AV N R V+ L + ++ + DF H+ A VR A P
Sbjct: 72 ESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAA-VRAA----SP 126
Query: 135 DLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAK--GDPEFEWIRPRTEWDP 192
DL V+ A + YE+LVA+ G DP
Sbjct: 127 DLT---HVVAIGGARAGLD----------------YEALVARHLGARVANAAVDHD--DP 165
Query: 193 IVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW--SVPTQPVYLWTLPMFHSNGWCFPW 250
+TSGTT PK V H + V N L+D Q L P+ H G
Sbjct: 166 CWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAG-IHQL 224
Query: 251 AMAAVGGTNICI--RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP-----DKKPL 303
A G + + +FD + ++ L+ RH VT++ P +L ML P D L
Sbjct: 225 CQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLV--EHPAVDRYDHSSL 282
Query: 304 KLAKPVHLVTAGAPPPAAVLLRT-ESLGFKVSHGYGLTE-TGGIVVSCAWKRNWNLLPAA 361
+ +++ AGAP A R LG + +GL E TG I V LP A
Sbjct: 283 R-----YVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITV----------LPPA 327
Query: 362 -------EKAKL----KARQGVKTTALTEVDVLDPKSG-VSAKRDGSTLGEIVLRGGCIM 409
A++ R G+ EV + D + + G T GEI + G +
Sbjct: 328 LHDAEDGPDARIGTCGFERTGM------EVQIQDDEGRELPP---GET-GEICVIGPAVF 377
Query: 410 LGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVL 469
GY +P K D GWF TGD+G + + G+L I R+ D+ ISGG N+ E+E L
Sbjct: 378 AGYYNNPEANAKAFRD-GWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKL 436
Query: 470 YSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVV 529
++PAV+E AV+ PD WGE A ++G + E E++ + G++ Y +PK
Sbjct: 437 LTHPAVSEVAVLGVPDPVWGEVGVAVCVARDG--APVDEAELLAWLDGKVARYKLPKRFF 494
Query: 530 FMDELPKTSTGKIQKFVLREIAENMG 555
F D LPK+ GKI K ++RE E G
Sbjct: 495 FWDALPKSGYGKITKKMVREELEERG 520
|
Length = 528 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 4e-54
Identities = 124/367 (33%), Positives = 172/367 (46%), Gaps = 30/367 (8%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-P 249
D L YT GTT PKGV+ HR I +A L++W P P +L P+ H+ G F P
Sbjct: 169 DIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLP 228
Query: 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV 309
+ GGT I + KFD + + I +T P ++ L ++ D + L +
Sbjct: 229 TLLR--GGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLS---SL 283
Query: 310 HLVTAGAPPPAAVLLRT--ESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
V GA P + V L E G + YG TE +V++ KR+ + + K
Sbjct: 284 ETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAP-MVITYLRKRDHDP----DDPKRL 338
Query: 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGS-----TLGEIVLRGGCIMLGYLKDPIGTRKC 422
G + T V +LD DG +GEI +RG +M GY P T +
Sbjct: 339 TSCG-RPTPGLRVALLDE--------DGREVAQGEVGEICVRGPLVMDGYWNRPEETAEA 389
Query: 423 MTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482
D GW +TGDV DG+ I DR KD+I++GG N+ EVE VL +PAV + AV+
Sbjct: 390 FRD-GWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIG 448
Query: 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
PDE WGE A V L+ G + E+ + + R PK V F+D LP T+ GK
Sbjct: 449 VPDEKWGEAVTAVVVLRPG--AAVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKP 506
Query: 543 QKFVLRE 549
K LR
Sbjct: 507 DKKALRA 513
|
Length = 524 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 2e-53
Identities = 158/565 (27%), Positives = 247/565 (43%), Gaps = 76/565 (13%)
Query: 9 ANSTPLTPLVFLERAATVYGDSPSII--YNNITYTWSDTHHRCLQLASSLLSIGISRGHV 66
N PL F ER + + D P +I YT++D ++A+ L +GI +G V
Sbjct: 20 PNHLPLHDYCF-ERLSE-FSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDV 77
Query: 67 VSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV-----FVDFHS 121
V ++ PN P AV T N ++ + +KL+ +VD
Sbjct: 78 VMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLK 137
Query: 122 RALVREAVSLFPPDLKPPPLVLISD---DDDAAVSSQSHHPNISDDQFFSTYESLVAKGD 178
+ V++ D P + S+ D+ + P+
Sbjct: 138 GLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEISPD------------------ 179
Query: 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVP-----TQPV 233
D + L Y+SGTT PKGV+ H+G+ + +V D P + V
Sbjct: 180 ------------DVVALPYSSGTTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYFHSDDV 226
Query: 234 YLWTLPMFHSNGWCFPWAMAA---VGGTNICIRKFDASIIFDLIRRHGVTHMCGA-PVVL 289
L LPMFH + + VG + + KF+ + +LI+RH VT P+VL
Sbjct: 227 ILCVLPMFHI--YSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVL 284
Query: 290 NMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL---LRTESLGFKVSHGYGLTETGGIV 346
+ + P + L+ + +V +GA P L R + + GYG+TE G ++
Sbjct: 285 AIAKS---PVVEKYDLSS-IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVL 340
Query: 347 VSCAWKRNWNLLPAAEKAKLKARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLR 404
C A K + G T + E+ ++DP++G S R+ GEI +R
Sbjct: 341 AMC---------LAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP--GEICIR 389
Query: 405 GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVE 464
G IM GYL DP T + DGW +TGD+G + D L I DR K++I G ++ E
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE 449
Query: 465 VESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMV 524
+E++L S+P++ +AAVV DE GE P AFV GS+ TE E+ ++ ++ Y
Sbjct: 450 LEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEI--TEDEIKQFVAKQVVFYKR 507
Query: 525 PKTVVFMDELPKTSTGKIQKFVLRE 549
V F+D +PK +GKI + LR
Sbjct: 508 IHKVFFVDSIPKAPSGKILRKDLRA 532
|
Length = 537 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 7e-53
Identities = 151/556 (27%), Positives = 233/556 (41%), Gaps = 49/556 (8%)
Query: 20 LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79
L R A + D+P++ + T TW + R LA +L G+ G V ++ N E
Sbjct: 23 LARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82
Query: 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPP 139
A A+ +N RL ++ L+ C + +V + AL
Sbjct: 83 SVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTE---AALA-------------- 125
Query: 140 PLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTS 199
P+ D +S+ SDD YE L+A+ P P ++ YTS
Sbjct: 126 PVATAVRDIVPLLSTVVVAGGSSDDSVLG-YEDLLAEAGPAHA-PVDIPNDSPALIMYTS 183
Query: 200 GTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT-QPVYLWTLPMFHSNGWCFPWAMAAVGGT 258
GTT PKG V H + A+ L V +P+FH G +G
Sbjct: 184 GTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAP 243
Query: 259 NIC--IRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGA 316
+ + FD + D++ VT + P + + + L L +++ GA
Sbjct: 244 TVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLAL----RVLSWGA 299
Query: 317 PPPAAVLLRTESLGF---KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVK 373
P + LLR + F ++ +G TE V+C LL KL + V
Sbjct: 300 APASDTLLRQMAATFPEAQILAAFGQTEMSP--VTCM------LLGEDAIRKLGSVGKVI 351
Query: 374 TTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGD 433
T V V + + V +GEIV R +M GY +P T + GWF++GD
Sbjct: 352 PTVAARV-VDENMNDVPV----GEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGD 405
Query: 434 VGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPC 493
+ +GY+ + DR KD+IISGGEN+ EVE+VL S+P + E AV+ R DE WGE P
Sbjct: 406 LVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPV 465
Query: 494 AFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE---- 549
A +++ + E ++ E+ RL Y PK + +D LP+ GK+ K LRE
Sbjct: 466 AVAAVRNDDAALTLE-DLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGA 524
Query: 550 -IAENMGSSSSPLSRS 564
+ S+S+ +
Sbjct: 525 CVNVERRSASAGFTER 540
|
Length = 542 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 2e-51
Identities = 152/583 (26%), Positives = 244/583 (41%), Gaps = 73/583 (12%)
Query: 20 LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79
L R AT+ G++ I N T + L LA+ LL +G+ G VV++ + N E
Sbjct: 13 LTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72
Query: 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP- 138
AV A ++ +N R + + ++ D E S + +L+
Sbjct: 73 WLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTD--------ETCSSWYEELQND 124
Query: 139 --PPL---VLISDDDDAAVSSQSHHPNISDDQFFSTYESL-VAKGDPEFEWIRPRTEWDP 192
P L V + + I + F +T A G E ++ W P
Sbjct: 125 RLPSLMWQVFLESPSSSVF--------IFLNSFLTTEMLKQRALGTTELDYA-----WAP 171
Query: 193 ---IVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP 249
+++ +TSGTT PKGV H + + ++ ++ VYL T P+ H G
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231
Query: 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVL-NMLSNYRDPDKKPLKLAKP 308
AM VG ++ + KFDA I++H VT M P ++ +++S R K+
Sbjct: 232 LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRK--SMTWKVFPS 289
Query: 309 VHLVTAGAPPPAAVLLRTESLGF---KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAK 365
V + G ++ LL F K+ YG+TE C+ + + +
Sbjct: 290 VRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEA------CS---SLTFMTLHDPTL 340
Query: 366 LKARQGVKTTALTEVDVLDPKSGVSAKR------------DGSTLGEIVLRGGCIMLGYL 413
+Q ++T T+ + GV + + S +G I+ RG +MLGY
Sbjct: 341 ESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYW 400
Query: 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNP 473
T +++DGW TGD+G + G L + RS D I +GGEN+ EVE+VL +P
Sbjct: 401 GQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHP 460
Query: 474 AVNEAAVVARPDEFWGETPCAFVSLKEG----SKSKPTEKEMIE--------YCRGR-LP 520
V VV PD E A V L++G K K+ + +CR + L
Sbjct: 461 GVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLS 520
Query: 521 HYMVPKT-VVFMDELPKTSTGKIQKF-VLREIAENMGSSSSPL 561
+ +PK V + P T+TGKI++ V RE+ ++ S S L
Sbjct: 521 RFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQSLPSNL 563
|
Length = 563 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 4e-51
Identities = 120/371 (32%), Positives = 166/371 (44%), Gaps = 34/371 (9%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMFHSNGWC- 247
DP +L YTSGTT PKG +H HR + + V + + V+ WT + W
Sbjct: 89 DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVF-WTPADW---AWIG 144
Query: 248 ------FPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK 301
P V +++FD F L+RR+GVT+ P L M+ ++
Sbjct: 145 GLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRR-VGSERA 203
Query: 302 PLKLAKPVHLVTAGAPPPAAVLL-RTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
L + + G +L + LG V+ YG TE +V +CA L PA
Sbjct: 204 RYDLRLRA-VASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCA-----ALGPA 257
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG--CIMLGYLKDPIG 418
+ K G EV V+D +GEI ++ + LGY +P
Sbjct: 258 RPGSMGKPVPG------HEVAVVDDAGRPVPP---GEVGEIAVKRPDPVMFLGYWNNPEA 308
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
T D W TGD+G +DGYL K R+ DVI S G + E+E L +PAV EA
Sbjct: 309 TAAKFAGD-WLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEA 367
Query: 479 AVVARPDEFWGETPCAFVSLKEG-SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKT 537
AVV PD GE AFV L EG S E+ E + RL + P+ + F+DELP T
Sbjct: 368 AVVGVPDPERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMT 427
Query: 538 STGKIQKFVLR 548
+TGKI++ LR
Sbjct: 428 TTGKIRRRELR 438
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 4e-51
Identities = 134/397 (33%), Positives = 188/397 (47%), Gaps = 39/397 (9%)
Query: 169 TYESLVAKGDPEFEWI--RPR-TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD 225
+E+LV PR T D ++ YTSGTT PKG HR +F A +
Sbjct: 195 PWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKA- 253
Query: 226 WSVPT----QPVYLWTLPMFHSNG--WCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGV 279
W VP L LPMFH+ G C A++ +GG + + D +I D +++H
Sbjct: 254 W-VPGLGDGPERVLAALPMFHAYGLTLCLTLAVS-IGGELVLLPAPDIDLILDAMKKHPP 311
Query: 280 THMCGAPVVLNML---SNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHG 336
T + G P + + + R D ++ A A A P + V L + G + G
Sbjct: 312 TWLPGVPPLYEKIAEAAEERGVDLSGVRNA----FSGAMALPVSTVELWEKLTGGLLVEG 367
Query: 337 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGS 396
YGLTET I+V N + + GV TEV ++DP+ DG
Sbjct: 368 YGLTETSPIIVG-------NPMSDDRRP---GYVGVPFPD-TEVRIVDPEDPDETMPDGE 416
Query: 397 TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISG 456
GE+++RG + GY P T K D GWF TGDV VM DG++ I DR K++II+G
Sbjct: 417 E-GELLVRGPQVFKGYWNRPEETAKSFLD-GWFRTGDVVVMEEDGFIRIVDRIKELIITG 474
Query: 457 GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMI-EYC 515
G N+ EVE VL +P V +AAVV P E E A V L+ G+ + E + YC
Sbjct: 475 GFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA---LDPEGLRAYC 531
Query: 516 RGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552
R L Y VP+ +DELP+ GK+++ RE+ E
Sbjct: 532 REHLTRYKVPRRFYHVDELPRDQLGKVRR---REVRE 565
|
Length = 573 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 1e-50
Identities = 123/377 (32%), Positives = 173/377 (45%), Gaps = 44/377 (11%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYL-WTLPMFHSNGW--- 246
DPI+L +TSGTT PK V+H H + ++T+ W + QP + + S GW
Sbjct: 85 DPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMY-W-IGLQPGDIHLNIS---SPGWAKH 139
Query: 247 ---CF--PWAM-AAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK 300
F PW A V G N +FDA + + GVT C P V M +D +
Sbjct: 140 AWSSFFAPWNAGATVFGINY--PRFDARRYLGALEKFGVTTFCAPPTVWRMFI-QQDLAQ 196
Query: 301 KPLKLAKPVHLVTAGAPPPAAVLLRT-ESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359
++L + V+AG P V+ R ++ G + GYG TET ++ + +
Sbjct: 197 YDVRLRE---AVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQ------- 246
Query: 360 AAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC----IMLGYLKD 415
K+K + V +LD + K T GEI L G +MLGY+ D
Sbjct: 247 -----KVKPGSMGRPLPGYRVVLLDDEG----KEIPVTEGEIALDLGDRPIGLMLGYMGD 297
Query: 416 PIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAV 475
P T G++ TGD DGYL R+ DV S +S EVES L +PAV
Sbjct: 298 PEKTAAAF-RGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAV 356
Query: 476 NEAAVVARPDEFWGETPCAFVSLKEG-SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDEL 534
EAAVV PD P A++ LK G S+ E+ + R RL Y + + F+ EL
Sbjct: 357 AEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGEL 416
Query: 535 PKTSTGKIQKFVLREIA 551
PKT +GKI++ LR+I
Sbjct: 417 PKTISGKIRRVELRKIE 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 3e-50
Identities = 118/373 (31%), Positives = 161/373 (43%), Gaps = 44/373 (11%)
Query: 198 TSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA--AV 255
T GTT +PK H HR A + V L LP+FH G +A A
Sbjct: 10 TGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGG-AIVTGLAPLAR 68
Query: 256 GGTNI-----------CIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLK 304
G T + + F + ++ R+ VT + P VL L D
Sbjct: 69 GATVVLPTPSGFRNPAVVANF-----WKIVERYRVTLLSAVPTVLAALLQVPLGDADISS 123
Query: 305 LAKPVHLVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
L + +T AP P V R G V GYG+TE G+ A
Sbjct: 124 LR---YALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVS-------------AINP 167
Query: 364 AKLKARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTL--GEIVLRGGCIMLGYLKDPIGT 419
R G L T V V +G + RD + G + +RG + GYL +
Sbjct: 168 RGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHN 226
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479
+DGW TGD+G + +DGYL + R+KD+II GG N+ +E L +PAV AA
Sbjct: 227 AGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAA 286
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHY-MVPKTVVFMDELPKTS 538
V RPD + GE P A+V LK G + TE E++ + + R+P VPK + +D LP T+
Sbjct: 287 AVGRPDAYAGELPVAYVQLKPG--ATVTEGELLAFVKARIPERAAVPKAIYIIDALPLTA 344
Query: 539 TGKIQKFVLREIA 551
GKI K LR A
Sbjct: 345 VGKIFKPRLRCDA 357
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 6e-50
Identities = 131/529 (24%), Positives = 204/529 (38%), Gaps = 103/529 (19%)
Query: 30 SPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89
+ + T+ + H + A+ L ++G+S G V ++ P+ P L A A A
Sbjct: 1 KTAFYCGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGA 60
Query: 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDD 149
V +N L + + +L + L L+++ DD
Sbjct: 61 VAVALNPLLTPQDLEHILDDSGAAL----------------------------LVTEADD 92
Query: 150 AAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVV 209
A + Y S GTT PKGV+
Sbjct: 93 IA---------------YWLYTS---------------------------GTTGKPKGVM 110
Query: 210 HCHRGIFIVAVNTLSDWSVPT-QPVYLWTLPMFHS----NGWCFPWAMAAVGGTNICIR- 263
H HR A + + +F + N FP G + + +
Sbjct: 111 HRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPL---FSGASAVLLPG 167
Query: 264 KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323
+ DL+ RH T + G P + L V+AG PA +
Sbjct: 168 WPTPEAVLDLLARHRPTVLFGVPALYRAL--LESGAGSAPLFRSVRLCVSAGEALPAGLA 225
Query: 324 LR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALT--EV 380
R E+ G ++ G G TE I +S P A AR G + E
Sbjct: 226 ERWAEATGIEILDGIGSTEVLHIFISNR--------PGA------ARPGTTGRPVPGYEA 271
Query: 381 DVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD 440
++D SG T+G++ +RG + GY P T++ + DGW TGD +D
Sbjct: 272 RLVDE-SGREVPAG--TVGDLWVRGPSLAPGYWNLPEKTQRTLR-DGWLRTGDRFSRDAD 327
Query: 441 GYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKE 500
G+ + R+ D+I G+ +S +EVE+ L +PAV EAAVVA PDE AFV +
Sbjct: 328 GWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRP 387
Query: 501 GSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548
G + E+++ + R RL Y P+ + F+D LP+T+TGK+Q+F LR
Sbjct: 388 GEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 8e-49
Identities = 134/548 (24%), Positives = 224/548 (40%), Gaps = 70/548 (12%)
Query: 24 ATVYGDSPSIIYNNI-----TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
A VYG ++I+ + Y++ + + + A+ S+GI +G V++ N P
Sbjct: 17 ADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFI 76
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP 138
F + A++ IN RL + +LQ+ Q+ L+ + R+ + D P
Sbjct: 77 FCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQ---IQQEDATP 133
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYT 198
+ ++ A S + L A+ + P + D + +T
Sbjct: 134 LRHICLTRVALPADDGVSS------------FTQLKAQQPATLCYAPPLSTDDTAEILFT 181
Query: 199 SGTTMSPKGVV--HCH---RGIFIVAVNTLSDWSVPTQP--VYLWTLPMFHSNGWCFPWA 251
SGTT PKGVV H + G + S W + VYL +P FH + C A
Sbjct: 182 SGTTSRPKGVVITHYNLRFAGYY-------SAWQCALRDDDVYLTVMPAFHIDCQCTA-A 233
Query: 252 MAA--VGGTNICIRKFDASIIFDLIRRH--GVTHMCGAPVVLNMLSNYRDPDKKPLKLAK 307
MAA G T + + K+ A + + ++ +T C ++ ++ + + L +
Sbjct: 234 MAAFSAGATFVLLEKYSARAFWGQVCKYRATITE-CIPMMIRTLMVQPPSANDRQHCLRE 292
Query: 308 PVHLVTAGAPPPAAVLLRTESLGFKVS--HGYGLTET--GGIVVSCAWKRNWNLLPAAEK 363
+ + A R F V YG+TET G I KR W P+ +
Sbjct: 293 VMFYLNLSDQEKDAFEER-----FGVRLLTSYGMTETIVGIIGDRPGDKRRW---PSIGR 344
Query: 364 AKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRG---GCIMLGYLKDPIGTR 420
E ++ D +GEI ++G I Y DP T
Sbjct: 345 PGFC----------YEAEIRD-DHNRPL--PAGEIGEICIKGVPGKTIFKEYYLDPKATA 391
Query: 421 KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480
K + DGW +TGD G + +G+ DR ++I GGEN+S VE+E+++ ++P + + V
Sbjct: 392 KVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVV 451
Query: 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
V D E AFV L EG +E+E +C + + VP + +LP+ +G
Sbjct: 452 VGIKDSIRDEAIKAFVVLNEGETL--SEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSG 509
Query: 541 KIQKFVLR 548
KI K L+
Sbjct: 510 KIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 1e-48
Identities = 124/499 (24%), Positives = 190/499 (38%), Gaps = 91/499 (18%)
Query: 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTR 97
T+ + + R LAS LLS+GI G V++ + N P A+ AV I +
Sbjct: 44 EAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYST 103
Query: 98 LDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSH 157
++ +L +SK++FV+ ++ L+ + + K L++I D AV +++
Sbjct: 104 STPEQLAYILNESESKVIFVE--NQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKAL 161
Query: 158 HPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI-F 216
+ L+ E I P D + YTSGTT +PKGV+ HR +
Sbjct: 162 V--LEVFPDEGISLFLIDSAGLE-GRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLA 218
Query: 217 IV-AVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIR 275
V ++ + P L LP+ H F +A GG + K D + + ++
Sbjct: 219 QVAGIDEVLPPIGPGD-RVLSFLPLAHIFERAFEGGLALYGGVTVLF-KEDPRTLLEDLK 276
Query: 276 RHGVTHMCGAPVVLNML------------------------------SNYRDPDKKPLKL 305
T M G P V + S L
Sbjct: 277 EVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWL 336
Query: 306 AKPVHLV----------------TAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSC 349
LV + GAP +L SLG + GYGLTET +V
Sbjct: 337 LVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVN 396
Query: 350 A---WKRNW--NLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404
+ LP E K+ GEI++R
Sbjct: 397 PPDRFVLGTVGKPLPGIE-VKIADD-----------------------------GEILVR 426
Query: 405 GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVII-SGGENLSSV 463
G +M GY K+P T + T+DGWF TGD+G + DGYL I R K++I S G+N++
Sbjct: 427 GPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPE 486
Query: 464 EVESVLYSNPAVNEAAVVA 482
+ES L +P + + VV
Sbjct: 487 PIESKLAKSPLIEQICVVG 505
|
Length = 613 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 1e-46
Identities = 116/467 (24%), Positives = 176/467 (37%), Gaps = 121/467 (25%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
T TW++ R +LA+ L+++G+ G V++++ N P A+ A AV I
Sbjct: 5 TITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTS 64
Query: 99 DARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHH 158
V+ +L S A +V + D D
Sbjct: 65 SPEEVAYILN-----------DSGA----------------RVVFVEDKPD--------- 88
Query: 159 PNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIV 218
D L YTSGTT +PKGV+ HR +
Sbjct: 89 --------------------------------DLATLIYTSGTTGNPKGVMLTHRNLLAQ 116
Query: 219 AVNTLSDWSVPTQPVYLWTLPMFHS-NGWCFPWAMAAVGGTNICIRKFDASI--IFDLIR 275
A L + L LP+ H + + G F S + + +R
Sbjct: 117 AAALLEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVN----FAESPETLLEDLR 172
Query: 276 RHGVTHMCGAPVVLNMLSNYRDPDKK-----PLK---------LAKPVHLVTAGAPPPAA 321
T P V + Y + K PLK + V+ GAP P
Sbjct: 173 EVRPTVFFAVPRVWEKI--YAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPE 230
Query: 322 VLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVD 381
VL +LG + GYGLTET G+ R G L V+
Sbjct: 231 VLEFFRALGIPILEGYGLTETSGVATVNRPGDI--------------RIGTVGKPLPGVE 276
Query: 382 V-LDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD 440
V + GEI++RG +M GY K+P T + + +DGW +TGD+G + D
Sbjct: 277 VRIAED------------GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDED 324
Query: 441 GYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEAAVV--ARP 484
G+L I DR KD+I+ +GG+N++ +E+ L ++P +++A VV RP
Sbjct: 325 GFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDRP 371
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 3e-46
Identities = 148/533 (27%), Positives = 234/533 (43%), Gaps = 58/533 (10%)
Query: 43 SDTHHRCLQLASSLLS-----IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTR 97
S ++ L S+ + +G+ +G VV ++ PN + AV ++ T+N
Sbjct: 66 SISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPS 125
Query: 98 LDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSH 157
+ + C L F E V P L P + V
Sbjct: 126 SSLGEIKKRVVDCSVGLAFT-------SPENVEKLSP-LGVPVI---------GVPENYD 168
Query: 158 HPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFI 217
+ + F + L+ K D +F + D + Y+SGTT + KGVV HR I
Sbjct: 169 FDSKRIE--FPKFYELI-KEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRN-LI 224
Query: 218 VAVNTL-----SDWSVP-TQPVYLWTLPMFHSNGWC-FPWAMAAVGGTNICIRKFDASII 270
V S + P + VYL LPMFH G F + ++G T + +R+FDAS +
Sbjct: 225 AMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDM 284
Query: 271 FDLIRRHGVTHMCGAPVVLNMLSNYRDPD-KKPLKLAKPVHLVTAGAPPPAAVLLRTESL 329
+I R VTH P +L L+ + LK K V+ GA P + + +
Sbjct: 285 VKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLK---QVSCGAAPLSGKFI--QDF 339
Query: 330 GFKVSH-----GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLD 384
+ H GYG+TE+ + R +N EK + G+ + + V+D
Sbjct: 340 VQTLPHVDFIQGYGMTESTAV-----GTRGFN----TEKLSKYSSVGLLAPNM-QAKVVD 389
Query: 385 PKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLE 444
+G GE+ ++G +M GYL +P T+ + DGW TGD+ DGYL
Sbjct: 390 WSTGCLLPPGNC--GELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLY 447
Query: 445 IKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS 504
I DR K++I G ++ ++E+VL S+P + +AAV A PD+ GE P AFV ++GS
Sbjct: 448 IVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTL 507
Query: 505 KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557
+++ +I Y ++ Y + VVF+ +PK+ GKI + L+ N SS
Sbjct: 508 --SQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVSS 558
|
Length = 560 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 7e-45
Identities = 147/537 (27%), Positives = 221/537 (41%), Gaps = 55/537 (10%)
Query: 23 AATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82
AA D ++I T T+++ + LA LL++G+ G V+V++ N +
Sbjct: 58 AARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALY 117
Query: 83 AVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVD--FHSRALVREAVSLFPPDLKPPP 140
A A + +NT ++ + K + D F + +S PPDL
Sbjct: 118 AAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFT------DLLSALPPDL-GRL 170
Query: 141 LVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSG 200
+ DD P+ S D+ T + L+A +P ++L TSG
Sbjct: 171 RAWGGNPDDD-------EPSGSTDE---TLDDLIAGSSTA-PLPKPPKPGGIVIL--TSG 217
Query: 201 TTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW-CFPWAMAAVGGTN 259
TT +PKG LS L PMFH+ GW AMA +G T
Sbjct: 218 TTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMA-LGSTV 276
Query: 260 ICIRKFDASIIFDLIRRHGVTHMCGAPVVLN-MLSNYRDPDKKP----LKLAKPVHLVTA 314
+ R+FD + I +H T + PV+L+ +L + K LK+ + +
Sbjct: 277 VLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKI-----IFVS 331
Query: 315 GAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVK 373
G+ + R E+ G + + YG TE + A + P + K
Sbjct: 332 GSALSPELATRALEAFGPVLYNLYGSTEVA--FATIATPEDLAEAPGT------VGRPPK 383
Query: 374 TTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGD 433
V +LD + +G I + G GY R DG +GD
Sbjct: 384 GV---TVKILDENGN---EVPRGVVGRIFVGNGFPFEGY----TDGRDKQIIDGLLSSGD 433
Query: 434 VGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPC 493
VG DG L + R D+I+SGGEN+ EVE +L +P V EAAV+ DE +G+
Sbjct: 434 VGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLR 493
Query: 494 AFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
AFV G + E + +Y R L Y VP+ VVF+DELP+ TGK+ K LRE+
Sbjct: 494 AFVVKAPG--AALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548
|
Length = 549 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 1e-44
Identities = 149/564 (26%), Positives = 217/564 (38%), Gaps = 88/564 (15%)
Query: 9 ANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVS 68
A +TP P V + V +TY D +LA S+G+ RG V+
Sbjct: 7 AQTTPDKPAVIMASTGEV-----------VTYRELDERSN--RLAHLFRSLGLKRGDHVA 53
Query: 69 VVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREA 128
+ N E+ +A + +N+ L + ++ ++ + + R
Sbjct: 54 IFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARAL 113
Query: 129 VSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRT 188
+ P LVL D + F Y VA G P
Sbjct: 114 LKQCPGVR--HRLVLDGDGELEG---------------FVGYAEAVA-GLPA---TPIAD 152
Query: 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD-----WSVPTQPVYLWTLPMFHS 243
E + Y+SGTT PKG+ L+ W + VYL P++HS
Sbjct: 153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHS 212
Query: 244 NGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPL 303
+ +GGT I + FDA LI +GVTH +V M S + L
Sbjct: 213 APQRAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTH---TQLVPTMFS-------RML 262
Query: 304 KLAKPVHL----------VTAGAPPPAAVLLRT-ESLGFKVSHGYGLTETGGIVVSCAWK 352
KL + V + A AP P V + + G + Y TE G +
Sbjct: 263 KLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDS-- 320
Query: 353 RNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGC 407
W L V ++ +LD DG+ L G I GG
Sbjct: 321 EEW----------LAHPGTVGRAMFGDLHILDD--------DGAELPPGEPGTIWFEGG- 361
Query: 408 IMLGYLKDPIGTRKCMTDDG-WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVE 466
YL DP T + DG W GD+G + DGYL + DR+ +IISGG N+ E E
Sbjct: 362 RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAE 421
Query: 467 SVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVP 525
++L ++P V +AAV P+E GE A V +G P E+I +CR RL P
Sbjct: 422 NLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCP 481
Query: 526 KTVVFMDELPKTSTGKIQKFVLRE 549
+++ F DELP+ TGK+ K +LR+
Sbjct: 482 RSIDFEDELPRLPTGKLYKRLLRD 505
|
Length = 511 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-44
Identities = 120/395 (30%), Positives = 182/395 (46%), Gaps = 45/395 (11%)
Query: 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV 228
T L + DPE DP +L++TSGTT PKGV+H HR + VA + + +
Sbjct: 78 TTPELYERTDPE----------DPALLHFTSGTTGKPKGVLHVHRAV--VAHYATARYVL 125
Query: 229 PTQP--VYL------WTLPMFHSNGWCFPWAMAAVGGTNICIR-KFDASIIFDLIRRHGV 279
+P VY W S G P G T + +FDA + ++ V
Sbjct: 126 DLRPDDVYWCTADPGWVTGT--SYGIIAPLLN---GVTLVVDEGEFDAERWYGILEEEKV 180
Query: 280 THMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAP-PPAAVLLRTESLGFKVSHGYG 338
T AP L ML L+ H+ + G P P V+ + LG + +
Sbjct: 181 TVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWW 240
Query: 339 LTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL 398
TETG I+++ N+ +P + + G++ A+ E D G++ +
Sbjct: 241 QTETGAIMIA-----NYPGIPVKPGSMGRPLPGIEA-AVIERD----GDGLTPVTGPGQV 290
Query: 399 GEIVLRGG--CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISG 456
GE+ L+ G + GYL + D GW+ TGD+ DGY R+ DVI +
Sbjct: 291 GELALKPGWPSMFRGYLGNEERYASSFVD-GWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349
Query: 457 GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEK---EMIE 513
G + EVES L +PAV EA V+ +PD GE AFVSL+ G +P+E+ E++
Sbjct: 350 GHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPG--FEPSEELRRELLT 407
Query: 514 YCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548
+ R RL + P+ + F+D LPKT +GKI + +L+
Sbjct: 408 FARQRLGAAVAPREIHFVDNLPKTRSGKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 5e-44
Identities = 148/552 (26%), Positives = 227/552 (41%), Gaps = 73/552 (13%)
Query: 20 LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79
L A Y D ++I ++++ R +LA+ L +GI G V V PNV Y
Sbjct: 34 LTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYI 93
Query: 80 LHFAV--PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVD-----FHSRALVREAVSLF 132
FA+ A VL + R A + ++ L+ V F R RE V+
Sbjct: 94 TFFALLRLGVAPVLALPSHR--ASELGAFASQIEAALLIVARQHSGFDYRPFARELVA-- 149
Query: 133 PPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDP 192
V+++ + + HP++ + P P +
Sbjct: 150 --KHPTLRHVIVAGEAE--------HPSVLEAALCH----PAGLFTPA-----PPADAGE 190
Query: 193 IVLNYTSG-TTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWA 251
+ SG TT +PK + H + + Q VYL LP H+ P A
Sbjct: 191 VAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGA 250
Query: 252 MAA--VGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNML----SNYRDPDKKPLKL 305
+ GGT + + F LI RHGVT P L L + + D L+L
Sbjct: 251 LGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPP-LASLWLQAAEWERADLSSLRL 309
Query: 306 AKPVHLVTAGA--PPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
L GA A + LG ++ +G+ E G+V N+ L
Sbjct: 310 -----LQVGGARLSATLARRVPAV-LGCQLQQVFGMAE--GLV-------NYTRLDDPP- 353
Query: 364 AKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIG 418
+ QG + EV V+D DG+ + GE++ RG + GY + P
Sbjct: 354 EIIIHTQGRPLSPDDEVRVVD--------ADGNPVAPGEVGELLTRGPYTIRGYYRAPEH 405
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
+ DG++ +GD+ DGYL ++ R KD I GGE +++ EVE++L +PAV++A
Sbjct: 406 NARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDA 465
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKT 537
A+VA PDE GE CAF+ +KE ++ + R R L + +P + F+D LP T
Sbjct: 466 ALVAMPDELLGEKSCAFIVVKE---PPLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLT 522
Query: 538 STGKIQKFVLRE 549
+ GKI K LR
Sbjct: 523 AVGKIDKKALRR 534
|
Length = 542 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 4e-43
Identities = 152/557 (27%), Positives = 233/557 (41%), Gaps = 75/557 (13%)
Query: 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSP 72
PLT + L A Y D+ +II N +++ + R LA+ L +GI +G V P
Sbjct: 24 PLTDI--LRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLP 81
Query: 73 NVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA---LVREAV 129
N+ Y + FA+ +L V L H +S+L ++ A
Sbjct: 82 NIAEFYIVFFAL-----------LKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAH 130
Query: 130 SLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFF-STYESLVAKGDPEFEWIR--- 185
SLF D DD A QS P + + T E F W+
Sbjct: 131 SLF-------------DYDDFARQLQSKLPTLRNIIVAGQTGE------AELFLWLESPA 171
Query: 186 -----PRTEWDPIV-LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
P T+ D + + G+T +PK + H + ++ + Q YL LP
Sbjct: 172 EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALP 231
Query: 240 MFHSNGWCFPWAMAA--VGGTNICIRKFDASIIFDLIRRHGVTHMCGAP----VVLNMLS 293
H+ P A+ GG + + F LI RH VT P + + S
Sbjct: 232 AAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAAS 291
Query: 294 NYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT-ESLGFKVSHGYGLTETGGIVVSCAWK 352
R D LKL L GA AA R G ++ +G+ E G+V
Sbjct: 292 KSRA-DLSSLKL-----LQVGGAKFSAAAARRVPAVFGCQLQQVFGMAE--GLV------ 337
Query: 353 RNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGY 412
N+ L + + QG + EV V+D A G T G ++ RG GY
Sbjct: 338 -NYTRLDDPAE-IIFTTQGRPMSPDDEVRVVDDHGNPVAP--GET-GMLLTRGPYTFRGY 392
Query: 413 LKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472
K P +G++YTGD+ + +GY+ + R+KD I GGE +++ E+E++L ++
Sbjct: 393 YKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAH 452
Query: 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFM 531
PAV++AA+V+ PDE GE CAF+ +++ ++ + R R L Y +P V F+
Sbjct: 453 PAVHDAALVSMPDELLGEKSCAFIVVRD---PALKAAQLRRFLRERGLAEYKLPDRVEFV 509
Query: 532 DELPKTSTGKIQKFVLR 548
D LP T+ GK+ K LR
Sbjct: 510 DSLPLTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 9e-43
Identities = 143/515 (27%), Positives = 213/515 (41%), Gaps = 67/515 (13%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN----VPALYELHFAVPFAAAVLNTINT 96
T+S+ R +A+ L + G+ V+VV+PN V AL LH AV +N
Sbjct: 30 TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRL----GAVPALMNP 85
Query: 97 RLDARTVSLLLQ--HCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSS 154
RL ++ L++ + ++ VD A V +A+ VL D
Sbjct: 86 RLKPAEIAELIKRGEMTAAVIAVD----AQVMDAIF----QSGSGVRVLALGDLVGLGEP 137
Query: 155 QSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRG 214
+S P I D PR P + YTSGTT PKG V R
Sbjct: 138 ESAGPPIED---------------------PPREPEQPAFVFYTSGTTGLPKGAVIPQRA 176
Query: 215 I--FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW--CFPWAMAAVGGTNICIRKFDASII 270
++ ++T + V L +P++H G+ A+A + GT + + +FD +
Sbjct: 177 AESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALA-LDGTYVVVEEFDPADA 235
Query: 271 FDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES-L 329
LI + VT + P L+ L+ + PLKL H+ AGA P AVL R L
Sbjct: 236 LKLIEQERVTSLFATPTHLDALAA--AAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHL 293
Query: 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGV 389
+ + YG TE N + + ++ +EV ++
Sbjct: 294 PGEKVNIYGTTEA----------MNSLYMRDP-----RTGTEMRPGFFSEVRIVRIGGSP 338
Query: 390 SAKRDGSTLGE-IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDR 448
GE +V GYL P T + + D GW+ T DV V+ G + I R
Sbjct: 339 DEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQD-GWYRTSDVAVVDPSGTVRILGR 397
Query: 449 SKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE 508
D+IISGGEN+ EVE VL P V E V+ PDE WG++ A V +EG +
Sbjct: 398 VDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREG--ETLSA 455
Query: 509 KEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKI 542
+ +CR L + P+ F+DELPK + K+
Sbjct: 456 DALDTFCRASELADFKRPRRYFFLDELPKNAMNKV 490
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 1e-42
Identities = 140/557 (25%), Positives = 213/557 (38%), Gaps = 80/557 (14%)
Query: 20 LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79
E A D +++ + T+++ R +LA L++ G+ G V + + N E
Sbjct: 9 FEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVE 68
Query: 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDL-KP 138
A AV +N R + LL + + + R V+ P L K
Sbjct: 69 AMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALV---YEREF-APRVAEVLPRLPKL 124
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYT 198
LV++ D + + YE +A G PE ++ R+ D +L YT
Sbjct: 125 RTLVVVEDGSGNDLLPGAV-----------DYEDALAAGSPERDFG-ERSPDDLYLL-YT 171
Query: 199 SGTTMSPKGVVHCHRGIFIVAVNTLSDWSVP---------------TQPVYLWTLPMFHS 243
GTT PKGV+ IF V + + P+ H
Sbjct: 172 GGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHG 231
Query: 244 NG-WCFPWAMAAV--GGTNIC--IRKFDASIIFDLIRRHGVTHMC------GAPVVLNML 292
G W A AA+ G T + +FDA ++ I R V + P +L
Sbjct: 232 AGQWA---AFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARP----LL 284
Query: 293 SNYRDPDKKPLKLAKPVHLVTAGAPPPAAV---LLRTESL-GFKVSHGYGLTETGGIVVS 348
P L+ + + GA +V LL E L ++ G +ETG
Sbjct: 285 DALEAR--GPYDLSSLFAIASGGALFSPSVKEALL--ELLPNVVLTDSIGSSETGFGGSG 340
Query: 349 CAWKRNWNLLPAAEKAKLKARQGVKTTALTEVD-VLDPKSGVSAKRDGSTLGEIVLRGGC 407
K + T L E ++P SG + R G
Sbjct: 341 TVAKGA----VHTGGPRFTIGPR--TVVLDEDGNPVEPGSGEIG---------WIARRGH 385
Query: 408 IMLGYLKDPIGTRKCM-TDDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVE 464
I LGY KDP T + T DG + GD + +DG + + R I +GGE + E
Sbjct: 386 IPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEE 445
Query: 465 VESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMV 524
VE L ++P V +A VV PDE WG+ A V L+EG ++P E+ +CR L Y V
Sbjct: 446 VEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREG--ARPDLAELRAHCRSSLAGYKV 503
Query: 525 PKTVVFMDELPKTSTGK 541
P+ + F+DE+ ++ GK
Sbjct: 504 PRAIWFVDEVQRSPAGK 520
|
Length = 533 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 2e-42
Identities = 145/546 (26%), Positives = 229/546 (41%), Gaps = 62/546 (11%)
Query: 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN 73
+ P AA D P +I T TW + R LA++L ++ I VV ++ N
Sbjct: 43 MGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRN 102
Query: 74 VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFP 133
E A A + +NT ++ ++ V D A V A++ P
Sbjct: 103 HRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCP 162
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI 193
+ +V +D+D T E L+A + P +
Sbjct: 163 ---QATRIVAWTDEDHDL-----------------TVEVLIAA--HAGQRPEPTGRKGRV 200
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS--DWSVPTQPVYLWTLPMFHSNGWCFPWA 251
+L TSGTT +PKG G L W +P + PMFH+ G+
Sbjct: 201 IL-LTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRA-EEPTVI-VAPMFHAWGFSQLVL 257
Query: 252 MAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNML-----SNYRDPDKKPLKLA 306
A++ T + R+FD DLI RH T + PV+ + + + L+ A
Sbjct: 258 AASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFA 317
Query: 307 KPVHLVTAGAP-PPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAK 365
+G+ P V+ + G + + Y TE G I + L AA
Sbjct: 318 -----AASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATA-----TPADLRAAPDTA 367
Query: 366 LKARQGVKTTALTEVDVLDPKSGVSAKRDGST--LGEIVLRGGCIMLGYLKDPIGTRKCM 423
+ +G TE+ +LD R+ T +G I +R GY G+ K
Sbjct: 368 GRPAEG------TEIRILDQDF-----REVPTGEVGTIFVRNDTQFDGYTS---GSTK-D 412
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483
DG+ +GDVG + +G L + R ++I+SGGEN+ +EVE L ++P V EAAV+
Sbjct: 413 FHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGV 472
Query: 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543
DE +G+ AFV LK G+ + T + + ++ R L +Y VP+ +V +DELP+ +TGKI
Sbjct: 473 DDEQYGQRLAAFVVLKPGASA--TPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKIL 530
Query: 544 KFVLRE 549
+ L+
Sbjct: 531 RRELQA 536
|
Length = 537 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 3e-42
Identities = 153/540 (28%), Positives = 224/540 (41%), Gaps = 99/540 (18%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSV-VSPNVPALYELHFAVPFAAAVLNTINTR 97
YT+ D +LA+ L+++G+ G V+V V + AL L+ A A AV +NT
Sbjct: 28 RYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALA-LYLATLRAGAVFLPLNTA 86
Query: 98 LDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDD------DAA 151
+ + + LV D + A + + P V D D +AA
Sbjct: 87 YTLAELDYFIGDAEPALVVCDPANFAWLSKIA-----AAAGAPHVETLDADGTGSLLEAA 141
Query: 152 VSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHC 211
+ P +FE + PR D + YTSGTT KG +
Sbjct: 142 ----AAAP-------------------DDFETV-PRGADDLAAILYTSGTTGRSKGAMLS 177
Query: 212 HRGIFIVAVNTLSD-WSVPTQPVYLWTLPMFH-------SNGWCFPWAMAAVGGTNICIR 263
H + A+ TL D W V + LP+FH +N A+ A G + I +
Sbjct: 178 HGNLLSNAL-TLVDYWRFTPDDVLIHALPIFHTHGLFVATNV-----ALLA-GASMIFLP 230
Query: 264 KFDASIIFDLIRRHGVTHMCGAPVV-LNMLSNYR-DPDKKPLKLAKPVHLVTAGAPPPAA 321
KFD + L+ R T M G P +L R + A + L +G+ P
Sbjct: 231 KFDPDAVLALMPR--ATVMMGVPTFYTRLLQEPRLTRE-----AAAHMRLFISGSAP--- 280
Query: 322 VLL---------RTESLGFKVSHGYGLTETGGIVVS-CAWKRNWNLLPAAEKAKLKARQG 371
LL RT G + YG+TET + +R R G
Sbjct: 281 -LLAETHREFQERT---GHAILERYGMTETNMNTSNPYDGER---------------RAG 321
Query: 372 VKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWF 429
L + V DP++G +G I ++G + GY + P T + DG+F
Sbjct: 322 TVGFPLPGVSLRVTDPETGAELPPGE--IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFF 379
Query: 430 YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489
TGD+G + GY+ I R KD+IISGG N+ EVE + P V E+AV+ P +G
Sbjct: 380 ITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFG 439
Query: 490 ETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
E A V K G + E ++ +GRL + PK V F+DELP+ + GK+QK +LRE
Sbjct: 440 EGVTAVVVPKPG--AALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLRE 497
|
Length = 504 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 5e-42
Identities = 147/513 (28%), Positives = 219/513 (42%), Gaps = 71/513 (13%)
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
G+ RG V+V+ P VP + ++ A V +L A+ + LQ ++K + V
Sbjct: 63 GLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCI-VTS 121
Query: 120 HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP 179
A ++++ P LK +L+S+ S D + + ++ L+ +
Sbjct: 122 DELAPAVDSIASECPSLKTK--LLVSEH--------------SRDGWLN-FKELLKEAST 164
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
E ++ +++ +P+ + +TSGTT PK H H + + W T +W +
Sbjct: 165 EHTCVKTKSQ-EPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMS 223
Query: 240 MFHSNGWCF--------PWAMAAVGGTNICI-----RKFDASIIFDLIRRHGVTHMCGAP 286
GW PW A C+ +FD +I + ++ +T C AP
Sbjct: 224 ---DTGWIKAAIWSLFSPWIQGA------CVFVHHLPRFDPKVILQTLSKYPITTFCSAP 274
Query: 287 VVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGI 345
V ML D K H VT G P VL + G + GYG TETG I
Sbjct: 275 TVYRMLVQ---QDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLI 331
Query: 346 VVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRG 405
CA + K+K K + +V ++D V T G+I +R
Sbjct: 332 ---CANFKG---------MKIKPGSMGKASPPYDVQIIDDNGNVLPP---GTEGDIGIRV 376
Query: 406 G-----CIMLGYLKDPIGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKDVIISGGEN 459
C+ Y+ +P T T G FY TGD G+M DGY R+ DVI S G
Sbjct: 377 KPTRPFCLFSCYVDNPEKTAA--TIRGDFYITGDRGIMDEDGYFWFVGRADDVINSSGYR 434
Query: 460 LSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE---KEMIEYCR 516
+ EVES L +PAV E+AVV+ PD GE AFV L S E KE+ E+ +
Sbjct: 435 IGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKELQEHVK 494
Query: 517 GRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
Y P+ V F+ ELPKT TGKI++ LR+
Sbjct: 495 SVTAPYKYPRKVEFVQELPKTITGKIKRNELRD 527
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 8e-42
Identities = 108/371 (29%), Positives = 168/371 (45%), Gaps = 44/371 (11%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTLPMFHSNGW-- 246
D ++ +TSGTT PKG +H HR I + + + P V++ + P+ + G
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAIC-DAFPRHVLQPTPDDVFIGSPPLAFTFGLGG 206
Query: 247 --CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLN-MLSNYRDPDKKPL 303
FP G + + + + ++ I+ H T + AP ML + D L
Sbjct: 207 LVLFP---LRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIKVKAFDISSL 263
Query: 304 KLAKPVHLVTAGAPPPAAVL-LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAE 362
+ V+AG PA V E G K+ G G TE I +S +
Sbjct: 264 RKC-----VSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISANEEN--------- 309
Query: 363 KAKLKARQGVKTTALT--EVDVLDPKSGVSAKRDGSTLGEIVLRG--GCIMLGYLKDPIG 418
A+ G + E ++D G R G + +RG GC YL D
Sbjct: 310 -----AKPGATGKPVPGYEARIVD-DQGNEVPR--GEAGRLAVRGPTGC---RYLDDE-- 356
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
++ DGW TGD+ DGY RS D+I+S G N+++ EVE L ++P V E
Sbjct: 357 RQQEYVRDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAEC 416
Query: 479 AVVARPDEFWGETPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKT 537
AV+ PDE G+ CA + L++G+K ++ + + ++ + + Y P+ + F+D LPKT
Sbjct: 417 AVIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKT 476
Query: 538 STGKIQKFVLR 548
TGKIQ+F LR
Sbjct: 477 QTGKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 1e-41
Identities = 143/530 (26%), Positives = 241/530 (45%), Gaps = 66/530 (12%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
T+ + + A +L S+G+ +G VV VV PNV + + A V + N
Sbjct: 55 AVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTA 114
Query: 99 DARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHH 158
+ + +KL+ + + V+ L P +VL + + AV+
Sbjct: 115 LESEIKKQAEAAGAKLIVTNDTNYGKVK--------GLGLPVIVLGEEKIEGAVN----- 161
Query: 159 PNISDDQFFSTYESLVAKGD-----PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHR 213
++ L+ D + E I + D L ++SGTT KGV+ HR
Sbjct: 162 -----------WKELLEAADRAGDTSDNEEI---LQTDLCALPFSSGTTGISKGVMLTHR 207
Query: 214 GIFIVAVNTLSDWSVPT----QPVYLWTLPMFH---SNGWCFPWAMAAVGGTNICIRKFD 266
+ ++L +SV Q V L +P FH G C A G + + +F+
Sbjct: 208 NLVANLCSSL--FSVGPEMIGQVVTLGLIPFFHIYGITGICC--ATLRNKGKVVVMSRFE 263
Query: 267 ASIIFDLIRRHGVTHM-CGAPVVLNMLSN--YRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323
+ + V+ P++LN++ N + D LKL ++TA AP +L
Sbjct: 264 LRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQA---IMTAAAPLAPELL 320
Query: 324 LRTESL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALT--E 379
E+ G +V YGLTE I ++ EK A++ L E
Sbjct: 321 TAFEAKFPGVQVQEAYGLTEHSCITLTHG---------DPEKGHGIAKKNSVGFILPNLE 371
Query: 380 VDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHS 439
V +DP +G S ++ T GE+ +R C+M GY + T + + +DGW +TGD+G +
Sbjct: 372 VKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDD 429
Query: 440 DGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLK 499
DG + I DR K++I G ++ E+E++L ++P+V +AAVV PDE GE P A V +
Sbjct: 430 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVIN 489
Query: 500 EGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
K+K +E++++ + + HY + V F+D +PK+ +GKI + +L+E
Sbjct: 490 P--KAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKE 537
|
Length = 546 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 2e-41
Identities = 132/380 (34%), Positives = 173/380 (45%), Gaps = 61/380 (16%)
Query: 195 LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW--------SVPTQPVYLWTLPMFH--SN 244
L YT GTT KG HR I + V + W P Q ++ LP++H +
Sbjct: 209 LQYTGGTTGVSKGATLLHRNI-VANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFAL 267
Query: 245 GWCFPWAMAAVGGTNICI---RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK- 300
C M GG NI I R I +L +++ V + N L N D DK
Sbjct: 268 TVCGLLGMRT-GGRNILIPNPRDI-PGFIKEL-KKYQVHIFPAVNTLYNALLNNPDFDKL 324
Query: 301 --KPLKLAKPVHLVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNL 357
L +A G V R E G ++ GYGL+ET V +C N
Sbjct: 325 DFSKLIVA-----NGGGMAVQRPVAERWLEMTGCPITEGYGLSETSP-VATC------NP 372
Query: 358 LPAAEKAKLKARQGVKTTAL----TEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCI 408
+ A E + T L TEV + D DG+ L GEI +RG +
Sbjct: 373 VDATEFSG--------TIGLPLPSTEVSIRD--------DDGNDLPLGEPGEICIRGPQV 416
Query: 409 MLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESV 468
M GY P T K MT DG+F TGDVGVM GY +I DR KD+I+ G N+ E+E V
Sbjct: 417 MAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEV 476
Query: 469 LYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTV 528
+ S+P V E A V PDE GE FV K+ + TE+++ +C+ RL +Y PK V
Sbjct: 477 VASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPAL---TEEDVKAFCKERLTNYKRPKFV 533
Query: 529 VFMDELPKTSTGKIQKFVLR 548
F ELPKT+ GKI + LR
Sbjct: 534 EFRTELPKTNVGKILRRELR 553
|
Length = 557 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-40
Identities = 140/566 (24%), Positives = 220/566 (38%), Gaps = 140/566 (24%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV-----------P-F 86
YT+ + + A+ L +G+ +G V + P +P LY FA+ P F
Sbjct: 73 KYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELY---FALLGALKNGAIVGPLF 129
Query: 87 AAAVLNTINTRL---DAR----TVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPP 139
A + + RL +A+ T +LL + L P LK
Sbjct: 130 EAFMEEAVRDRLEDSEAKVLITTPALLERKPADDL-------------------PSLKH- 169
Query: 140 PLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTS 199
VL+ +D + +L+ + EF+ I D +L+YTS
Sbjct: 170 --VLLVGEDVEE-----------GPGTLD-FNALMEQASDEFD-IEWTDREDGAILHYTS 214
Query: 200 GTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTLPMFHSNGWCF--------- 248
G+T PKGV+H H + + + VY WC
Sbjct: 215 GSTGKPKGVLHVHNAMLQHYQTGK--YVLDLHEDDVY-----------WCTADPGWVTGT 261
Query: 249 ------PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK 301
PW G TN+ +F + ++ + VT AP + ML D K
Sbjct: 262 SYGIFAPWLN---GATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVK 318
Query: 302 PLKLAKPVHLVTAGAP-PPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNL--- 357
L+ H+++ G P P V + G + + +TETGGI+++ N
Sbjct: 319 KYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIA-------NYPAM 371
Query: 358 ----------LPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG- 406
LP E A + QG + L P + +G + ++ G
Sbjct: 372 DIKPGSMGKPLPGIEAAIVD-DQG---------NELPP----------NRMGNLAIKKGW 411
Query: 407 -CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465
+M G +P W+ +GD M DGY + R DVI + GE + EV
Sbjct: 412 PSMMRGIWNNPEKYESYFAG-DWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEV 470
Query: 466 ESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE---KEMIEYCRGRLPHY 522
ES L +PAV EA V+ +PD GE AFV+L+ G +P+E +E+ + + L +
Sbjct: 471 ESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPG--YEPSEELKEEIRGFVKKGLGAH 528
Query: 523 MVPKTVVFMDELPKTSTGKIQKFVLR 548
P+ + F D+LPKT +GKI + VL+
Sbjct: 529 AAPREIEFKDKLPKTRSGKIMRRVLK 554
|
Length = 570 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 6e-40
Identities = 149/554 (26%), Positives = 233/554 (42%), Gaps = 62/554 (11%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L +AA YG P++ + + T+++ A++LL G + V++ N P
Sbjct: 26 LLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHP 85
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP 138
F A A + ++ R +S L ++L+ + AL+ A+ L
Sbjct: 86 INFFGALKAGARVVHLSPLDGERALSHKLSDSGARLL-ITSDLAALLPMALKFLEKGLLD 144
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI-VLNY 197
+++ +DD+ P I D TY V EW P D + +L Y
Sbjct: 145 R--LIVCEDDNWGKVGTPQAP-IPADPRIVTYADFVKGAAAPAEW--PAVTPDDVALLQY 199
Query: 198 TSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPV------YLWTLPMFHSNGWCFPWA 251
T GTT PKG + H G AV+ W P++ + LP+FH
Sbjct: 200 TGGTTGLPKGAMLTH-GNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILL 258
Query: 252 MAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVH 310
+ G I + ++FD + +F I T G P + L+N DP + L+
Sbjct: 259 RSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAN--DPSLEKRDLSSLAT 316
Query: 311 LVTAGAPPPAAVL-LRTESLGFKVSHGYGLTET---------------GGIVVSCAWKRN 354
+ + GAP P V G K+ G+G+TET G I +
Sbjct: 317 IGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGL------- 369
Query: 355 WNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLK 414
+LP E L V + DP + +GE+ +RG + GY
Sbjct: 370 --MLPGIE--------------LDVVSLDDPTKVLPP----GEVGELRIRGPNVTRGYWN 409
Query: 415 DPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPA 474
P + + D F TGD+G M +DGY + DR KD+IISGG N+ +E +Y +P
Sbjct: 410 RPEESAEAFVGDR-FLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPG 468
Query: 475 VNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDEL 534
V E V+ PD++ GE AFV L+ G+K + E+ + G+L + +P V F+DEL
Sbjct: 469 VQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLD-ELRAFLAGKLGKHELPVAVEFVDEL 527
Query: 535 PKTSTGKIQKFVLR 548
P+T GK+ + LR
Sbjct: 528 PRTPVGKLSRHELR 541
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 8e-40
Identities = 118/395 (29%), Positives = 177/395 (44%), Gaps = 67/395 (16%)
Query: 182 EWIRPRTEWDPIV-LNYTSGTTMSPKGVVHCHR----------GIFIVAVNTLSDWSVPT 230
++++P + + L YT GTT KG + HR + ++ + V
Sbjct: 197 QYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA 256
Query: 231 QPVY-LWTLPMFHSNGWCFPWAMAAVGGTNICI---RKFDASIIFDLIRRHGVTHMCGAP 286
P+Y ++ L + N F +GG N+ I R + ++++ T + G
Sbjct: 257 LPLYHIFALTV---NCLLF----IELGGQNLLITNPRDIPGFV--KELKKYPFTAITGVN 307
Query: 287 VVLNMLSN---YRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL-GFKVSHGYGLTET 342
+ N L N +++ D LKL+ V G AV R L G + GYGLTE
Sbjct: 308 TLFNALLNNEEFQELDFSSLKLS-----VGGGMAVQQAVAERWVKLTGQYLLEGYGLTEC 362
Query: 343 GGIVVSCAWKRNWNL--------LPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRD 394
+V ++L LP TE+ ++D
Sbjct: 363 SPLVSVN----PYDLDYYSGSIGLPVPS---------------TEIKLVDDDGNEVPP-- 401
Query: 395 GSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVII 454
G GE+ ++G +MLGY + P T + + DGW TGD+ VM +G+L I DR KD+I+
Sbjct: 402 GEP-GELWVKGPQVMLGYWQRPEATDEVIK-DGWLATGDIAVMDEEGFLRIVDRKKDMIL 459
Query: 455 SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEY 514
G N+ E+E V+ +P V E A V P E GE FV K+ S TE+E+I +
Sbjct: 460 VSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSL---TEEELITH 516
Query: 515 CRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
CR L Y VPK V F DELPK++ GKI + LR+
Sbjct: 517 CRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRD 551
|
Length = 560 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 3e-39
Identities = 135/525 (25%), Positives = 213/525 (40%), Gaps = 68/525 (12%)
Query: 48 RCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLL 107
R + A L ++G+ G V+++ N A +E +A A +N ++ +L
Sbjct: 20 RAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL 79
Query: 108 QHCQSKLVFVDFHSRALVREAVSLFPPDLK-----PPPLVL----ISDDDDAAVSSQSHH 158
+ ++++ H+ L+ S P + PP + IS
Sbjct: 80 EDSGARVLIA--HAD-LLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTP------- 129
Query: 159 PNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVV-------HC 211
+E +A+ +P + P P + YTSGTT PKGV
Sbjct: 130 -----PAGAIDWEGWLAQQEP---YDGPPVP-QPQSMIYTSGTTGHPKGVRRAAPTPEQA 180
Query: 212 HRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIF 271
+ A+ + + L T P++HS + +GG + +FD +
Sbjct: 181 AAAEQMRALI----YGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL 236
Query: 272 DLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR-TESLG 330
LI RH +THM P + L + + ++ H++ A AP PA V E G
Sbjct: 237 QLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG 296
Query: 331 FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVS 390
+ YG TE+G V +E A K E+ +D
Sbjct: 297 PVIYEYYGSTESG-AVTFAT----------SEDALSHPGTVGKAAPGAELRFVD------ 339
Query: 391 AKRDGSTL-----GEIVLR-GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLE 444
DG L GEI R G Y P R + G+ +GDVG + +DGYL
Sbjct: 340 --EDGRPLPQGEIGEIYSRIAGNPDFTYHNKP-EKRAEIDRGGFITSGDVGYLDADGYLF 396
Query: 445 IKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS 504
+ DR +D++ISGG N+ E+E+VL++ P V++ AV PD +GE A V + G +
Sbjct: 397 LCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG--A 454
Query: 505 KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
E ++ + RL Y VPK + M ELP+ +GKI K LR+
Sbjct: 455 TLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRD 499
|
Length = 509 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-38
Identities = 117/374 (31%), Positives = 159/374 (42%), Gaps = 37/374 (9%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTLPMFHSNGWCF 248
D YTSGTT PKGV + A +++ + V+ W + GW +
Sbjct: 89 DLFAQMYTSGTTGLPKGVPVPLN--ALAAFYAYMRYAIDLRDDDVF-WNIA---DPGWAY 142
Query: 249 PWAMAAVG----GTNICIRK--FDASIIFDLIRRHGVTHMCGAPVVLNML--SNYRDPDK 300
A G G + F A +D++ R GVT+ G+P ML + +
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202
Query: 301 KPLKLAKPVHLVTAGAP-PPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359
LKL +AG P P V +LG + YG TETG V N + L
Sbjct: 203 IKLKLRV---ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPV------GNHHALA 253
Query: 360 AAEKAKLKARQGVKTTALT--EVDVLDPKSGVSAKRDGSTLGEIVLRGGCIML-GYLKDP 416
R G L + VLD A + L V + GY DP
Sbjct: 254 HE------VRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDP 307
Query: 417 IGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVN 476
T + + W+ TGD+ DGY R+ DVIIS G + +VES L +PAV
Sbjct: 308 EKTAELI-AGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVA 366
Query: 477 EAAVVARPDEFWGETPCAFVSLKEGSKSKPT-EKEMIEYCRGRLPHYMVPKTVVFMDELP 535
EAAVV PD GE AFV LKEG +E+ + + RL + P+ V F+ LP
Sbjct: 367 EAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALP 426
Query: 536 KTSTGKIQKFVLRE 549
KT +GKIQ+F+LR+
Sbjct: 427 KTPSGKIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 4e-38
Identities = 141/524 (26%), Positives = 213/524 (40%), Gaps = 51/524 (9%)
Query: 48 RCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLL 107
+LA+ L + G+ RG V+V PN L A A + +NTR + V+ +L
Sbjct: 44 LVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHIL 103
Query: 108 QHCQSKLVFVD--FHSRALVR--EAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163
+++ + V F AV PPD PP + DD A
Sbjct: 104 GRGRARWLVVWPGFKGIDFAAILAAV---PPDALPPLRAIAVVDDAA--------DATPA 152
Query: 164 DQFFSTYESLVAKGDPE---FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV 220
+ + L A DP R +L TSGTT PK V+H + A
Sbjct: 153 PAPGARVQ-LFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHAR 211
Query: 221 NTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVT 280
+ V L LP G+ A G +C FDA+ +RRH VT
Sbjct: 212 AIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVT 271
Query: 281 HMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLT 340
H G +L + + ++ A+ + AP + + G ++ YG +
Sbjct: 272 HTFGNDEMLRRILD-TAGERADFPSARLFGF-ASFAPALGELAALARARGVPLTGLYGSS 329
Query: 341 ETGGIV----VSCAWKRNWNL--LPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRD 394
E +V + PA+ +A+++AR DP+ G + D
Sbjct: 330 EVQALVALQPATDPVSVRIEGGGRPASPEARVRAR--------------DPQDG-ALLPD 374
Query: 395 GSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVII 454
G + GEI +R +M GYL +P T + +TDDG+F TGD+G DG + R D +
Sbjct: 375 GES-GEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLR 433
Query: 455 SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGET-PCAFVSLKEGSKSKPTEKEMIE 513
GG ++ E+E L + P V A VV + G+T P AFV +G + P E ++
Sbjct: 434 LGGFLVNPAEIEHALEALPGVAAAQVVGATRD--GKTVPVAFVIPTDG--ASPDEAGLMA 489
Query: 514 YCRGRLPHYMVPKTVVFMDELPKTSTG---KIQKFVLREIAENM 554
CR L + VP V ++ P T + KIQK LRE+A+
Sbjct: 490 ACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQAR 533
|
Length = 540 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-37
Identities = 116/384 (30%), Positives = 169/384 (44%), Gaps = 63/384 (16%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIF--------IVAVNTLSDWSVPTQPVYLWTLPMFH 242
D VL YT GTT KG + HR + ++ N + P LP++H
Sbjct: 208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAP-----LPLYH 262
Query: 243 SNGWCFP-WAMAAVGGTNICI---RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSN---Y 295
+ F AM +G NI I R A + + + + G + L N +
Sbjct: 263 IYAFTFHCMAMMLIGNHNILISNPRDLPAMV--KELGKWKFSGFVGLNTLFVALCNNEAF 320
Query: 296 RDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRN 354
R D LKL ++ G A R + + G + GYG+TET
Sbjct: 321 RKLDFSALKLT-----LSGGMALQLATAERWKEVTGCAICEGYGMTETS----------- 364
Query: 355 WNLLPAAEKAKLKARQGVKTTAL----TEVDVLDPKSGVSAKRDGSTL-----GEIVLRG 405
P +A Q V T + T V+D DG+ L GE+ ++G
Sbjct: 365 ----PVVSVNPSQAIQ-VGTIGIPVPSTLCKVIDD--------DGNELPLGEVGELCVKG 411
Query: 406 GCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465
+M GY + P T + + DGW TGD+ ++ DGY+ I DR KD+I+ G N+ E+
Sbjct: 412 PQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNEL 471
Query: 466 ESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVP 525
E VL + P V + A + PDE GE FV +K G T+++++E+ R L Y VP
Sbjct: 472 EDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETL--TKEQVMEHMRANLTGYKVP 529
Query: 526 KTVVFMDELPKTSTGKIQKFVLRE 549
K V F DELP T+ GKI + LR+
Sbjct: 530 KAVEFRDELPTTNVGKILRRELRD 553
|
Length = 562 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 1e-37
Identities = 152/596 (25%), Positives = 239/596 (40%), Gaps = 126/596 (21%)
Query: 23 AATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76
G+ +II+ + T T+ + + + A+ L S+G+ +G V++ P +P
Sbjct: 56 LKAGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIP- 114
Query: 77 LYELHFAVPFAA---AVLNTINTRLDARTVSLLLQHCQSKLVF-VDFHSR--------AL 124
EL A+ A A+ + + A ++ + +SKL+ D R +
Sbjct: 115 --ELPIAMLACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEI 172
Query: 125 VREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWI 184
V EA+ P K +V+ + + + L+AK P E
Sbjct: 173 VDEALEKCPSVEKV--IVVKRTGGEVPMVEGRDVW----------WHDLMAKASPYCE-- 218
Query: 185 RPRTEW----DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTL 238
E DP+ + YTSG+T PKGVVH G ++V T + P VY
Sbjct: 219 ---PEPMDAEDPLFILYTSGSTGKPKGVVHTTGG-YLVYAATTFKYVFDIHPDDVY---- 270
Query: 239 PMFHSNGWCFPWAMAAVG---------------GTNICIRKF-------DASIIFDLIRR 276
WC A +G G + + D ++++ +
Sbjct: 271 -------WC----TADIGWITGHSYIVYGPLANGATTVM--YEGAPDYPDPGRWWEIVEK 317
Query: 277 HGVTHMCGAPVVLNMLSNYRD--PDKKPLKLAKPVHLVTAGAP--PPAAVLLRTESLGFK 332
+ VT AP + ML + D P K L + L + G P P A +
Sbjct: 318 YKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLR--LLGSVGEPINPEAWMWYYE-----V 370
Query: 333 VSHG-------YGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTAL--TEVDVL 383
+ + TETGG +++ LP A LK G T E ++
Sbjct: 371 IGKERCPIVDTWWQTETGGHMITP--------LPGA--TPLKP--GSATRPFPGVEPAIV 418
Query: 384 DPKSGVSAKRDGSTLGEIVLRG---GCIMLGYLKDPIGTRKCMTDD--GWFYTGDVGVMH 438
D + + +G G +V++ G ++ D K G+++TGD
Sbjct: 419 DEEGN---EVEGGVEGYLVIKRPWPG-MLRTIYGDHERYVKTYFSKFPGYYFTGDGARRD 474
Query: 439 SDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSL 498
DGY I R DVI G L + EVES L S+PAV EAAVV +PDE GE AFV+L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534
Query: 499 KEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
K+G + S KE+ ++ R + P ++F+ LPKT +GKI + +LR+IA
Sbjct: 535 KDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRRILRKIAAG 590
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 3e-37
Identities = 111/356 (31%), Positives = 161/356 (45%), Gaps = 34/356 (9%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSD-WSVPTQPVYLWTLPMFHSNGWCF----PWA 251
YTSGTT PKGVV R I ++ L++ W V + LP+FH +G P
Sbjct: 135 YTSGTTGPPKGVVLSRRAI-AADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGP-- 191
Query: 252 MAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311
+G + + + G T G P V + ++ DP+ L L
Sbjct: 192 -LRIGNRFVHTGRPTPEAYAQALSEGG-TLYFGVPTVWSRIA--ADPEA-ARALRGARLL 246
Query: 312 VTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQ 370
V+ A P V R +L G + YG+TET L+ + +A + R
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTET--------------LITLSTRADGERRP 292
Query: 371 GVKTTALTEVDV-LDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWF 429
G L V+ L + G DG T+GE+ +RG + GYL P T T DGWF
Sbjct: 293 GWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWF 352
Query: 430 YTGDVGVMHSDGYLEIKDR-SKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFW 488
TGDV V+ DG I R S D+I SGG + + E+E+ L +P V EAAVV PD+
Sbjct: 353 RTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDL 412
Query: 489 GETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
G+ A+V + E+I++ +L + P+ V F+D LP+ + GK+ K
Sbjct: 413 GQRIVAYVVGADD----VAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLK 464
|
Length = 471 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 4e-37
Identities = 137/542 (25%), Positives = 213/542 (39%), Gaps = 47/542 (8%)
Query: 20 LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79
LE AA D+ ++++++ T T++ R L LAS L +G++RG V++
Sbjct: 6 LEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVT 65
Query: 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPP 139
F A V IN L A V+ +L C +L+ + + + + P
Sbjct: 66 AMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLV----TSSERLDLLHPALPGC-HD 120
Query: 140 PLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTS 199
LI D A S + + L+A GD + P + D + YTS
Sbjct: 121 LRTLIIVGDPAHASEGHPGEEPAS------WPKLLALGDADPP--HPVIDSDMAAILYTS 172
Query: 200 GTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTN 259
G+T PKGVV HR + A + + L LP+ G+ VG T
Sbjct: 173 GSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATV 232
Query: 260 ICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT--AGAP 317
+ + + +HG+T + P + L+ P A + +T GA
Sbjct: 233 VLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQ----LDWPESAAPSLRYLTNSGGAM 288
Query: 318 PPAAVL-LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTA 376
P A + LR+ ++ YGLTE A++ + LP E + G K
Sbjct: 289 PRATLSRLRSFLPNARLFLMYGLTE--------AFRSTY--LPPEEVDRRPDSIG-KAIP 337
Query: 377 LTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWF------- 429
EV VL A + GE+V RG + +GY DP T + F
Sbjct: 338 NAEVLVLREDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLP 394
Query: 430 ----YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485
++GD +G+L R ++I + G +S EVE V Y+ V EA PD
Sbjct: 395 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPD 454
Query: 486 EFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKF 545
G+ V+ G + ++ CR RLP+YMVP + LP+ + GKI +
Sbjct: 455 PTLGQAIVLVVTPPGGEELDR--AALLAECRARLPNYMVPALIHVRQALPRNANGKIDRK 512
Query: 546 VL 547
L
Sbjct: 513 AL 514
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-36
Identities = 104/382 (27%), Positives = 150/382 (39%), Gaps = 77/382 (20%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS----VPTQPVYLWTLPMFH--SNGWCFPW 250
YTSG+T PKGV+ HRG+ VN L+ + L S FP
Sbjct: 100 YTSGSTGRPKGVMVEHRGL----VNLLAWLQERYGLTAGDRVLQFASFSFDASVWEIFPP 155
Query: 251 AMAAVGGTNICI----RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK-KPLKL 305
++ G T + + D + +L+R H +T + P +L L + +P L+
Sbjct: 156 LLS--GAT-LVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALEPAALPSLR- 211
Query: 306 AKPVHLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
++ G PA ++ R G ++ + YG TET V + + P
Sbjct: 212 ----LVIVGGEALPAELVRRWRELFPGARLVNAYGPTET---TVDVTY---HEVDPDDLD 261
Query: 364 AKL----KARQGVKTTALTEVDVLDPK-----SGVSAKRDGSTLGEIVLRGGCIMLGYLK 414
+ T V VLD GV GE+ + G + GYL
Sbjct: 262 GGSVPIGRPIAN------TRVYVLDEDLRPVPVGVP--------GELYIGGAGVARGYLN 307
Query: 415 DPIGTRKCMTDDGWF-------Y-TGDVGVMHSDGYLEIKDRSKD-VIISG-----GENL 460
P T + D F Y TGD+ DG LE R+ D V I G GE
Sbjct: 308 RPELTAERFVPD-PFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGE-- 364
Query: 461 SSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLP 520
+E+ L ++P V EA VVAR D + A+V G++ E+ + RLP
Sbjct: 365 ----IEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAE--LDAAELRAFLAERLP 418
Query: 521 HYMVPKTVVFMDELPKTSTGKI 542
YMVP V +D LP T GK+
Sbjct: 419 DYMVPSAFVVLDALPLTPNGKV 440
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-36
Identities = 139/538 (25%), Positives = 215/538 (39%), Gaps = 68/538 (12%)
Query: 29 DSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRG--HVVSVVSPNVPALYELHFAVPF 86
D+ ++ Y + T+TW + A++L+++ HV V+ N P + A
Sbjct: 16 DTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHV-GVLLGNTPEMLFWLAAAAL 74
Query: 87 AAAVLNTIN-TRLDARTVSLL--LQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVL 143
VL +N TR R +L ++ +L+ D R L+ DL ++
Sbjct: 75 GGYVLVGLNTTR---RGAALAADIRRADCQLLVTDAEHRPLLDGL------DLPGVRVLD 125
Query: 144 ISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTM 203
+ Y LVA R DP +L +TSGTT
Sbjct: 126 VDTPA---------------------YAELVA-AAGALTPHREVDAMDPFMLIFTSGTTG 163
Query: 204 SPKGVVHCH-RGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICI 262
+PK V H R F T + + V ++P+FHSN WA A G + +
Sbjct: 164 APKAVRCSHGRLAFAGRALT-ERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVAL 222
Query: 263 R-KFDASIIFDLIRRHGVTHM--CGAPVVLNMLSNYRDPD-KKPLKLAKPVHLVTAGAPP 318
KF AS D +RR+G T+ G P+ + + R D PL++A +P
Sbjct: 223 PAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA----FGNEASPR 278
Query: 319 PAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKL-KARQGV----- 372
A R G +V GYG +E IVV P + + GV
Sbjct: 279 DIAEFSR--RFGCQVEDGYGSSEGAVIVV---------REPGTPPGSIGRGAPGVAIYNP 327
Query: 373 KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIML-GYLKDPIGTRKCMTDDGWFYT 431
+T V D G D + +GE+V G GY +P T + M G +++
Sbjct: 328 ETLTECAVARFDA-HGALLNADEA-IGELVNTAGAGFFEGYYNNPEATAERMRH-GMYWS 384
Query: 432 GDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGET 491
GD+ +DG++ R+ D + GENLS+ +E +L +PA+N AV A PDE G+
Sbjct: 385 GDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQ 444
Query: 492 PCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
A + L++G+ P + L P+ V +LP T+T K+ K L
Sbjct: 445 VMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIA 502
|
Length = 540 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-36
Identities = 152/582 (26%), Positives = 236/582 (40%), Gaps = 102/582 (17%)
Query: 27 YGDSPSIIY------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYEL 80
GD ++IY TYT+++ + +LA L +G+ +G V + P +P E
Sbjct: 55 RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIP---EA 111
Query: 81 HFAVPFAAAVLNTINTRL----DARTVSLLLQHCQSKLVF-VDFHSRA--------LVRE 127
A+ A A + I++ + ++ ++ + + KL+ F L+ +
Sbjct: 112 VIAM-LACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDK 170
Query: 128 AVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP-EFEWIRP 186
A+ L P VLI + + + L+AK P + +
Sbjct: 171 ALEL---SQHKPHKVLILNRGQVPAPLKPG--------RDLDWAELMAKARPVDCVPVES 219
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT----QP--VYLWTLPM 240
DP+ + YTSGTT PKGVV G + VA+ WS+ +P V+ +
Sbjct: 220 T---DPLYILYTSGTTGKPKGVVRDTGG-YAVALK----WSMRNIYGIKPGDVFWAASDV 271
Query: 241 FHSNGWCFPWAMAAVGGTNIC-----------------IRKFDASIIFDLIRRHGVTHMC 283
GW VG + I + DA + +I +GV +
Sbjct: 272 ----GW-------VVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALF 320
Query: 284 GAPVVLNMLSNYRDPDKKPLK---LAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGL 339
AP + + DPD + +K L+ L AG + L E +LG V +
Sbjct: 321 TAPTAIRAIRKQ-DPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIEKTLGVPVIDHWWQ 379
Query: 340 TETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLG 399
TETG + A LLP +K K +V VLD +G LG
Sbjct: 380 TETGWPI--TANCVGLELLP------IKPGSPGKPVPGYDVQVLDE-TGEELGPG--ELG 428
Query: 400 EIVLRG----GCIMLGYLKDPIGTRKCM--TDDGWFYTGDVGVMHSDGYLEIKDRSKDVI 453
IV++ GC +L D +K G++ TGD G DGYL + R+ DVI
Sbjct: 429 NIVIKLPLPPGC-LLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVI 487
Query: 454 ISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK--SKPTEKEM 511
G LS+ E+E + +P V E AVV DE G+ P V LK+ K + E E+
Sbjct: 488 NVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKIDADQLENEI 547
Query: 512 IEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
+ R ++ + VVF+ LPKT +GKI + LR+IA+
Sbjct: 548 VALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRKIADG 589
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-36
Identities = 134/525 (25%), Positives = 218/525 (41%), Gaps = 61/525 (11%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI---- 94
+ ++ + + +L ++L +G+ R V ++ L + F + F A+ I
Sbjct: 30 SLSYGELEAQVRRLGAALRRLGVKREERVLLL-----MLDGVDFPIAFLGAIRAGIVPVA 84
Query: 95 -NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVS 153
NT L A + +L+ ++++VFV +++ A+ K P L V
Sbjct: 85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG------KSPHLEHR------VVV 132
Query: 154 SQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHR 213
+ + L+A +F+ + + DP Y+SG+T PKGVVH H
Sbjct: 133 GRPEAGEVQ-------LAELLATESEQFKPAATQAD-DPAFWLYSSGSTGMPKGVVHTHS 184
Query: 214 GIFIVAVNTLSD-WSVPTQPVYLWTLPMFHS----NGWCFPWAMAAVGGTNICI-RKFDA 267
+ A + + V +F + N FP +VG T + + +
Sbjct: 185 NPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFP---MSVGATTVLMGERPTP 241
Query: 268 SIIFDLIRRHGVTHMCGAPVVL-NMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT 326
+FD +RRH T G P + ML++ P + ++L +AG PA V R
Sbjct: 242 DAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRL---CTSAGEALPAEVGQRW 298
Query: 327 ES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDP 385
++ G + G G TE I +S NL G + ++
Sbjct: 299 QARFGVDIVDGIGSTEMLHIFLS-------NLPGDVRYGT----SGKPVPGY-RLRLVGD 346
Query: 386 KSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEI 445
A G GE+++ G Y + TR W +GD V + DG
Sbjct: 347 GGQDVA--AGE-PGELLISGPSSATMYWNNRAKTRDTFQG-EWTRSGDKYVRNDDGSYTY 402
Query: 446 KDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK 505
R+ D++ G +S E+ES L +PAV EAAVV DE P AF+ L+ G
Sbjct: 403 AGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDID 462
Query: 506 PTEKEMI-EYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
+ + E+ + RL Y P+ +VF+D+LPKT+TGKIQ+F LRE
Sbjct: 463 TALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 1e-35
Identities = 148/582 (25%), Positives = 237/582 (40%), Gaps = 121/582 (20%)
Query: 20 LERAATVYGDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNV 74
++ A D ++I+ + +T+ D + A+ ++GI +G V + +
Sbjct: 23 VDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLT---L 79
Query: 75 PALYELHFAVPF-----AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAV 129
YE F++ A A+ T L A+ + ++ K++ V E +
Sbjct: 80 KRRYEFWFSMLALHKIGAIAIPAT--HMLTAKDIVYRIEAAGIKMIVCI--GEDGVPEHI 135
Query: 130 SLFPPDLKPPPL-VLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRT 188
P+ P L VL+ D + ++ + P+FE RP
Sbjct: 136 DEAAPECGSPTLLVLVGDPVPEG---------------WIDFDKEIENASPDFE--RPTG 178
Query: 189 EW-----DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHS 243
D +++ +TSGTT PK V H H T P+ +
Sbjct: 179 NDATCNDDILLVYFTSGTTGMPKMVEHDH-----------------TYPLGHIVTAKYWQ 221
Query: 244 N-------------GWCFPWAMAAVG--------GTNICI---RKFDASIIFDLIRRHGV 279
N GW A G G + + KFD + + I ++GV
Sbjct: 222 NVKEGGLHLTVADTGW----GKAVWGKLYGQWIAGAAVFVYDYDKFDPKNLLEKIEKYGV 277
Query: 280 THMCGAPVVLNMLSNYRDPDKKPLK---LAKPVHLVTAGAPPPAAVLLR-TESLGFKVSH 335
T C P + YR K+ L L+ + TAG P V E G K+
Sbjct: 278 TTFCAPPTI------YRFLIKEDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLME 331
Query: 336 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV--KTTALTEVDVLDPKSGVSAKR 393
G+G TET + + W ++ + G K + ++D++DP G S +
Sbjct: 332 GFGQTETTLTIATFPW--------------MEPKPGSMGKPSPGYDIDIIDP-DGKSCEV 376
Query: 394 DGSTLGEIVLR---GGCIML--GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDR 448
G GEIV+R G + L GY +DP T + DG+++TGD M DGYL R
Sbjct: 377 -GEE-GEIVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAWMDEDGYLWFVGR 433
Query: 449 SKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-SKPT 507
+ D+I S G + EVES L +PAV E AV PD G+ A + L +G + S+
Sbjct: 434 ADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEEL 493
Query: 508 EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
+KE+ ++ + Y P+ + F+DELPKT +GKI++ +RE
Sbjct: 494 KKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIRE 535
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-34
Identities = 134/543 (24%), Positives = 200/543 (36%), Gaps = 79/543 (14%)
Query: 29 DSPSIIYNNITYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFA 87
D + + + +W + A++L + + +R V V+ N P L A +
Sbjct: 18 DDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALS 77
Query: 88 AAVLNTINT--RLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLIS 145
V +N R A + CQ LV + L+
Sbjct: 78 GIVPVGLNPTRRGAALARDIAHADCQ--LVLTESAHAELL-------------------- 115
Query: 146 DDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSP 205
D D V N+ + + L A D E + + D +L +TSGT+ P
Sbjct: 116 DGLDPGVR----VINVDSPAWA---DELAAHRDAEPPFRVADPD-DLFMLIFTSGTSGDP 167
Query: 206 KGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIR-K 264
K V HR + V + + V ++P+FHSN WA+A G +I +R K
Sbjct: 168 KAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRK 227
Query: 265 FDASIIFDLIRRHGVTHM--CGAPVVLNMLSNYRDPDKK--PLKLAKPVHLVTAGAPPPA 320
F AS +RR+G T+ G P+ +L+ PD PL++ GAP
Sbjct: 228 FSASGFLPDVRRYGATYANYVGKPLSY-VLATPERPDDADNPLRIV----YGNEGAPGDI 282
Query: 321 AVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKL-KARQGVKTTALTE 379
A G V G+G TE G V+ P L GV
Sbjct: 283 ARF--ARRFGCVVVDGFGSTEGG---VAITR------TPDTPPGALGPLPPGVA------ 325
Query: 380 VDVLDPKSGVSAKR-----DGST-----LGEIV-LRGGCIMLGYLKDPIGTRKCMTDDGW 428
++DP +G +GE+V G GY DP + M G
Sbjct: 326 --IVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRG-GV 382
Query: 429 FYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFW 488
+++GD+ +DGY R D + GENL + +E +L P E AV A PD
Sbjct: 383 YWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVV 442
Query: 489 GETPCAFVSLKEGSKSKPTEKEMIEYCRGR--LPHYMVPKTVVFMDELPKTSTGKIQKFV 546
G+ A + L G+K P E+ + L P V ELP+T+T K+ K
Sbjct: 443 GDQVMAALVLAPGAKFDPDAFA--EFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQ 500
Query: 547 LRE 549
L
Sbjct: 501 LSA 503
|
Length = 529 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-33
Identities = 98/364 (26%), Positives = 148/364 (40%), Gaps = 43/364 (11%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA-AV 255
+TSG+T PKGV H + + D+ + V+ P F + F A A
Sbjct: 104 FTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAP-FSFDLSVFDLFPALAS 162
Query: 256 GGTNICIRKF---DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD--PDKKP-LKLAKPV 309
G T I K D +F+ ++ HG+T P ++L R+ P+ P L+
Sbjct: 163 GATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASLLLLSRELNPESLPSLR----- 217
Query: 310 HLVTAGAPPPAAVL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKL- 366
+ G P + LR ++ + YG TE V+ P + L
Sbjct: 218 TFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEA---TVAVTAYE-VTPEPLSRNEPLP 273
Query: 367 --KARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT 424
+ G++ L E P GE+V+ G + GYL +P T K
Sbjct: 274 IGYPKPGLRALILDEDGRPVP---------PGEEGELVIAGPQVSPGYLNNPEKTAKAFF 324
Query: 425 DD---GWFYTGDVGVMHSDGYLEIKDRSKD--VIISGGE-NLSSVEVESVLYSNPAVNEA 478
D W+ TGD+ + DG L R KD + + G L E+E+ L + P V EA
Sbjct: 325 QDEGQRWYRTGDLVYLEDDGLLVYLGR-KDFQIKLHGYRIELE--EIEAALRALPGVEEA 381
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
V+ P AFV KEG+ K + + + RLP YM+P+ V++D LP +
Sbjct: 382 VVLPVPKGEKVVRLVAFVVGKEGALD---TKALKKELKKRLPPYMIPRRFVYLDSLPLNA 438
Query: 539 TGKI 542
GKI
Sbjct: 439 NGKI 442
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 8e-33
Identities = 142/564 (25%), Positives = 230/564 (40%), Gaps = 49/564 (8%)
Query: 5 KPSPANSTP-LTPLVFLERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGI 61
P ++ P + LV E AAT ++P+++ + I ++ D LA L G+
Sbjct: 8 APMASDFGPRIADLV--EVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGL 65
Query: 62 SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF-- 119
G V++ + A A V+ ++ L + Q +++V +D
Sbjct: 66 LPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADG 125
Query: 120 -HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGD 178
H RA P P V + D + + S H + + E A
Sbjct: 126 PHDRAE--------PTTRWWPLTVNVGGDSGPSGGTLSVHLD-------AATEPTPATST 170
Query: 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTL 238
PE +RP D ++ +T GTT PK V H I ++ + + + + +
Sbjct: 171 PE--GLRP----DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVM 224
Query: 239 PMFHSNGWCFPWAMAAVGGTNICI---RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY 295
P++H +G G + + +F A +D I+ G T P + +L
Sbjct: 225 PLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLER 284
Query: 296 RDPDKKPLKLAKPVHLVTAGAP--PPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKR 353
+ K A + + AP A L+TE V +G+TE V + +
Sbjct: 285 AATEPSGRKPAALRFIRSCSAPLTAETAQALQTE-FAAPVVCAFGMTEATHQVTTTQIEG 343
Query: 354 NWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413
L R + D L +G +GE+ LRG ++ GYL
Sbjct: 344 IGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAG--------AVGEVWLRGTTVVRGYL 395
Query: 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNP 473
DP T TD GW TGD+G + + G L I+ R K++I GGE +S VE VL S+P
Sbjct: 396 GDPTITAANFTD-GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHP 454
Query: 474 AVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDE 533
V EAAV PD+ +GE A + +E + PT +E++++CR RL + +P +
Sbjct: 455 NVMEAAVFGVPDQLYGEAVAAVIVPRE--SAPPTAEELVQFCRERLAAFEIPASFQEASG 512
Query: 534 LPKTSTGKIQKFVLREIAENMGSS 557
LP T+ G + + R +AE G S
Sbjct: 513 LPHTAKGSLDR---RAVAEQFGHS 533
|
Length = 534 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 9e-33
Identities = 97/380 (25%), Positives = 149/380 (39%), Gaps = 54/380 (14%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVP---------------TQPVYL 235
D + + YT GTT PKGV+ IF V + D++ +L
Sbjct: 4 DDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGP-DFATGEPTLEELAKQVAAGGAGTRFL 62
Query: 236 WTLPMFHSNGWCFPWAMAAVGGTNICI---RKFDASIIFDLIRRHGVTHMC------GAP 286
P+ H G + A G + + KFD ++ + +H V + P
Sbjct: 63 PACPLMHGAG-QWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARP 121
Query: 287 VVLNMLSNYRDPDKKPLKLAKPVHLVTAGAP--PPAAVLLRTESLGFKVSHGYGLTETGG 344
+L + L + + ++GA P L + G +ETGG
Sbjct: 122 ----LLEALEAAGRYDLSSLRAI--SSSGAMWSPEVKQGLLELLPNLALVDALGASETGG 175
Query: 345 IVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404
S + A+ K + VLD G G I R
Sbjct: 176 GGSSVS-----RAGGASATGKFELGPDTV--------VLDEDGSEVPPGSGEV-GWIA-R 220
Query: 405 GGCIMLGYLKDPIGTRKCMTD-DG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLS 461
GG + LGY KDP T K + DG + GD + +DG + + R I +GGE +
Sbjct: 221 GGRVPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVF 280
Query: 462 SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH 521
EVE L ++P V +A VV PDE WG+ A V L+ G + E+ ++CR L
Sbjct: 281 PEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAG--AGLDLAELRDHCRQHLAG 338
Query: 522 YMVPKTVVFMDELPKTSTGK 541
Y +P+ +V +D +P+ +GK
Sbjct: 339 YKLPRAIVVVDTVPRAPSGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-32
Identities = 145/592 (24%), Positives = 228/592 (38%), Gaps = 120/592 (20%)
Query: 21 ERAATVY-GDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79
++ A ++ GD P T+ + H + A+ L S+G+ +G V++ P +P E
Sbjct: 72 DKVAIIWEGDEPG---EVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIP---E 125
Query: 80 LHFAVPFAA---AVLNTINTRLDARTVSLLLQHCQSKLVFV-DFHSR--------ALVRE 127
A+ A A+ + + A ++ + +KLV D R A+V E
Sbjct: 126 AAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDE 185
Query: 128 AVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPR 187
A+ P ++ +V + + V + + L+AK E
Sbjct: 186 ALEKCPVSVEHVLVVRRTGNPVPWVEGRDVW-----------WHDLMAKASAYCE----- 229
Query: 188 TEW----DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTLPMF 241
E DP+ + YTSG+T PKGV+H G + A T+ + + ++
Sbjct: 230 PEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMK-YVFDIKDGDIF------- 281
Query: 242 HSNGWCFPWAMAAVG---------------GTNICIRKF-------DASIIFDLIRRHGV 279
WC A VG G + F D +++I +H V
Sbjct: 282 ----WC----TADVGWITGHSYIVYGPLANGATTVM--FEGTPTYPDPGRFWEIIEKHKV 331
Query: 280 THMCGAPVVLNMLSNYRD--PDKKPLKLAKPVHLVTAGAP--PPAAVLLRTESLGFKVSH 335
T AP + L D K L + + V G P P A + +
Sbjct: 332 TIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSV--GEPINPEAWMWYYKVVGKERCPI 389
Query: 336 G--YGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTAL--TEVDVLDPKSGVSA 391
+ TETGGI+++ LP A K G T E V+D +
Sbjct: 390 VDTWWQTETGGIMITP--------LPGATPTK----PGSATLPFFGIEPAVVDEEG---N 434
Query: 392 KRDGSTLGEIVLRGGCI-------MLGYLKDPIGTRKCMTDD--GWFYTGDVGVMHSDGY 442
+G G + I + D G+++TGD DGY
Sbjct: 435 PVEGPGEGGYL----VIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGY 490
Query: 443 LEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGS 502
+ I R DVI G L + E+ES L S+PAV EAAVV PD+ G+ AFV+LK+G
Sbjct: 491 IWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGY 550
Query: 503 K-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
+ KE+ ++ R + P + F+ LPKT +GKI + +LR+IA
Sbjct: 551 EPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAG 602
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 5e-32
Identities = 114/389 (29%), Positives = 165/389 (42%), Gaps = 52/389 (13%)
Query: 186 PRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV----------PTQPVYL 235
P D VL YT GTT KG + H + + + S Q V +
Sbjct: 203 PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMI 262
Query: 236 WTLPMFH-----SNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVL 289
LP++H +N C M G N+ I D + + + + G +
Sbjct: 263 APLPLYHIYAFTANCMC----MMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLF 318
Query: 290 NMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVS 348
L ++ P K L + + G A R E L G + GYGLTET + +
Sbjct: 319 VALMDH--PGFKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVAST 376
Query: 349 CAWKRNWNLLPAAEKAKL-KARQGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIV 402
P E A+L V TAL +D DG+ L GE+
Sbjct: 377 N---------PYGELARLGTVGIPVPGTALKVID-----------DDGNELPLGERGELC 416
Query: 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSS 462
++G +M GY + P T + + +GWF TGD+ V+ DG++ I DR KD+II G N+
Sbjct: 417 IKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYP 476
Query: 463 VEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHY 522
E+E V+ ++P V A + PDE GE FV ++ S +E+ YC+ Y
Sbjct: 477 NEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSV---EELKAYCKENFTGY 533
Query: 523 MVPKTVVFMDELPKTSTGKIQKFVLREIA 551
VPK +V D LP T GKI + LR+IA
Sbjct: 534 KVPKHIVLRDSLPMTPVGKILRRELRDIA 562
|
Length = 562 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 120/511 (23%), Positives = 185/511 (36%), Gaps = 133/511 (26%)
Query: 35 YNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI 94
Y I+Y + R L + S L ++G+ G + + + N P A + V+ +
Sbjct: 3 YEWISY--KEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSS 154
L + +L + +VF D + + S
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCD---------------------AVKVYS--------- 90
Query: 155 QSHHPNISDDQFFSTYESLVAKG-DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHR 213
+E L G + P+ E D + YTSGTT +PKGV+ H
Sbjct: 91 ---------------FEELEELGKKNKVPPTPPKPE-DLATIMYTSGTTGNPKGVMLTHG 134
Query: 214 GI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASI-- 269
I + +N + + VY+ LP+ H +GG I +
Sbjct: 135 NIVAGVAGINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGG---RIGYYSGDTRG 191
Query: 270 IFDLIRRHGVTHMCGAPVVLNMLSNYRD------PDKKPLK------------------- 304
+ I+ T G P VL+ + K LK
Sbjct: 192 LKGDIKELKPTVFVGVPRVLDRI---YKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGH 248
Query: 305 -LAKPVH------------------LVTAGAPPPAAVL--LRTESLGFKVSHGYGLTET- 342
A P+ +++ GAP LR +LG V GYGLTET
Sbjct: 249 GYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRV-ALGCPVLQGYGLTETC 307
Query: 343 GGIVVSCAWKRNWN------LLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGS 396
G +S + LP E KL VDV P+ G AK D
Sbjct: 308 AGGTLS--DPGDTTTGHVGPPLPCCE-IKL-------------VDV--PEMGYFAKDDPP 349
Query: 397 TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVI-IS 455
GEI +RG + GY K+P T + +DGWF+TGD+G DG L+I DR K++ +S
Sbjct: 350 R-GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLS 408
Query: 456 GGENLSSVEVESVLYSNPAVNEAAVVARPDE 486
GE ++ ++E++ S+P V++ V +
Sbjct: 409 QGEYVALEKLENIYKSSPLVDQICVYGDSLK 439
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 8e-31
Identities = 111/389 (28%), Positives = 167/389 (42%), Gaps = 63/389 (16%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIV--AVNTLSDWSVPTQPVYLWTLPMFHSNGWCF 248
DP ++ YTSGTT PKG VH H G F V A + + + LW M GW
Sbjct: 101 DPAMIIYTSGTTGKPKGTVHTHAG-FPVKAAKDIGFCFDLKPGDRLLWITDM----GWMM 155
Query: 249 -PWAMA---AVGGTNICIRKF----DASIIFDLIRRHGVTHMCGAPVVLNMLSNY----- 295
PW + +G T + D ++ ++ RH VTH+ +P ++ L +
Sbjct: 156 GPWLVLGGLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDAPV 215
Query: 296 RDPDKKPLKLAKPVHLVTAGAP-PPAAVLLRTESLGFK---VSHGYGLTETGGIVVSCAW 351
D L++ L + G P P + L E +G + + G TE G ++
Sbjct: 216 EGHDLSSLRV-----LGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGILGN-- 268
Query: 352 KRNWNLLPAAEKAKLKARQGVKTTAL------TEVDVLDPKSGVSAKRDGSTLGEIVLRG 405
+P +K + + DV+D G + +GE+V+R
Sbjct: 269 ------VPIRP---------IKPCSFNGPSPGMDADVVDED-GRPVRG---EVGELVVRA 309
Query: 406 GCIML--GYLKDP---IGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENL 460
+ G+ +DP + T W + GD ++ DGY I RS D I G+ +
Sbjct: 310 PWPGMTRGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRV 368
Query: 461 SSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEG-SKSKPTEKEMIEYCRGRL 519
E+ESVL S+PAV EAA + PD GE FV LK G + S E E+ ++ L
Sbjct: 369 GPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDAL 428
Query: 520 PHYMVPKTVVFMDELPKTSTGKIQKFVLR 548
P+ V F+ +LPKT GKI + V+R
Sbjct: 429 GKPFRPREVHFVSDLPKTRNGKIMRRVIR 457
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-30
Identities = 127/545 (23%), Positives = 209/545 (38%), Gaps = 108/545 (19%)
Query: 29 DSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88
D+ +++Y + + T+++ + R +LA L + G+ G VV+++ P L A+ A
Sbjct: 2 DAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAG 61
Query: 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDD 148
A ++ A ++ +L+ ++++ D L R ++I +++
Sbjct: 62 AAYVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLP----------LVILEEE 111
Query: 149 DAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGV 208
A + P + D D + YTSG+T PKGV
Sbjct: 112 LDAEDAGPPAPAVDAD--------------------------DLAYVMYTSGSTGRPKGV 145
Query: 209 VHCHRGIFIVAVNTLSDW-SVPTQPVYLWTLPMFHSNGWCFP------WAMAAVGGTNIC 261
HRG+ + NT ++ ++ +L P+ F W GG +
Sbjct: 146 AVPHRGVVRLVRNT--NYIALDPDDRFLQLSPL------SFDASTFEIWGALLNGGRLVL 197
Query: 262 IRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG--A 316
I K D + LI GVT + + N L + DP+ + + G
Sbjct: 198 IDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDE-DPE-----ALAGLRQLLVGGDV 251
Query: 317 PPPAAV--LLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKT 374
PA V +L G ++ +GYG TE S ++ ++A G +
Sbjct: 252 LSPAHVRRVLAACP-GLRLINGYGPTENT--TFSTCH-----VITRLDEAADSIPIG-RP 302
Query: 375 TALTEVDVLDPKS-----GVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK------CM 423
T V +LD + GV GE+ + G + LGYL P T +
Sbjct: 303 IPNTTVYILDEEGQPVPIGVP--------GELYVGGDGLALGYLNRPELTAERFVPDPFG 354
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKD-VIISG-----GENLSSVEVESVLYSNPAVNE 477
+ + TGD+ DG +E R V I G GE +E L +P V E
Sbjct: 355 PGERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGE------IEQALLQHPGVRE 408
Query: 478 AAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKT 537
AAV+ R D + A+V + E+ + RLP YMVP V +DELP T
Sbjct: 409 AAVLVREDAAGDKRLVAYVVARGA----LDAAELRAHLAERLPAYMVPAAFVVLDELPLT 464
Query: 538 STGKI 542
+ GK+
Sbjct: 465 ANGKV 469
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 86/371 (23%), Positives = 165/371 (44%), Gaps = 35/371 (9%)
Query: 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF 248
+ P + +TSG+T PK + + + D+ + + L + HS F
Sbjct: 142 QNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSL---F 198
Query: 249 PWAMAA---VGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKL 305
+ + VG T +RKF + + D + ++ M P +L L K+ +
Sbjct: 199 LYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLY------KENRVI 252
Query: 306 AKPVHLVTAGA--PPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
+ ++++GA A ++ K+ YG +E + E+
Sbjct: 253 ENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTAL-----------VDEE 301
Query: 364 AKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423
++ + + +V + + +G ++ +G + ++ +GY+ + R+ +
Sbjct: 302 SERRPNSVGRPFHNVQVRICNE-AGEEVQKG--EIGTVYVKSPQFFMGYIIGGVLARE-L 357
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483
DGW DVG +G++ I R K++I+ GG N+ E+ESVL+ +PAV+E V+
Sbjct: 358 NADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGV 417
Query: 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543
PD +WGE P A + K T++++ +C RL + +PK F+DE+P T++GKI
Sbjct: 418 PDSYWGEKPVAII------KGSATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIA 471
Query: 544 KFVLREIAENM 554
+ + EN
Sbjct: 472 RMEAKSWIENQ 482
|
Length = 487 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 117/403 (29%), Positives = 180/403 (44%), Gaps = 52/403 (12%)
Query: 167 FSTYESLVAKGDPEFEWIRPRTEWDPI--VLNYTSGTTMSPKGVVHC-------HRGIFI 217
F ++E+ +A P TE P V+ Y+SGTT PKG+ G I
Sbjct: 130 FGSFEAALAGAGP------RLTE-QPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPI 182
Query: 218 VAVNTLSDWSVPTQPVYLWTLPMFHSNG--WCFPWAMAAVGGTNICIRKFDASIIFDLIR 275
VA+ + + + +Y + P++H+ WC + A+GGT + ++FDA +
Sbjct: 183 VAI-ARAFYDISESDIYYSSAPIYHAAPLRWC--SMVHALGGTVVLAKRFDAQATLGHVE 239
Query: 276 RHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV-LLRTESLGFKVS 334
R+ +T P + L + ++ ++ A AP P V + LG V
Sbjct: 240 RYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVY 299
Query: 335 HGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQG-VKTTALTEVDVLDPKSGVSAKR 393
Y TE G+ + A G V + L ++ + D
Sbjct: 300 EYYSSTEAHGMTF-------------IDSPDWLAHPGSVGRSVLGDLHICDD-------- 338
Query: 394 DGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYT--GDVGVMHSDGYLEIK 446
DG+ L G + + YL DP T F+T GD+G + DGYL +
Sbjct: 339 DGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLA 398
Query: 447 DRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-SK 505
DR +IISGG N+ E E+ L +PAV++ AV+ PD GE A + L EG + S
Sbjct: 399 DRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSD 458
Query: 506 PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548
+E+I+Y R R+ HY P++V F+DELP+T TGK+ K +LR
Sbjct: 459 ELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501
|
Length = 501 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-29
Identities = 104/372 (27%), Positives = 154/372 (41%), Gaps = 50/372 (13%)
Query: 197 YTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW--CFPWAM 252
YTSG+T PKGVV HR I F+ A + + V + F +
Sbjct: 106 YTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDR-VLQFASIAFDVSILEIFTTLL- 163
Query: 253 AAVGGTNICIRKFDASIIFDL---IRRHGVTHMCGAPVVLNMLSNYRDPDKKP-LKLAKP 308
GGT + I + + DL + R VT P +L +L DP+ P L+
Sbjct: 164 --AGGT-LVIPP-EELRLEDLAEFLNRLRVTVAHLTPSLLALL----DPEDVPSLRT--- 212
Query: 309 VHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA 368
L+ G P A L+ S ++ + YG TE V+ R L P K
Sbjct: 213 --LILGGEACPQA-LVDRWSKPRRLLNTYGPTEA---TVTATASR---LTPG------KP 257
Query: 369 RQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGW 428
+ VLDP +GE+ + G + GYL P T + D +
Sbjct: 258 VNIGRPLPNYTCWVLDPDLEPLVPI--GAVGELCIGGPGVARGYLNRPELTAEKFIPDPF 315
Query: 429 ---------FYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479
+ TGD+ DG LE R D + G+ + E+E+VL + P V AA
Sbjct: 316 WLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAA 375
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEY---CRGRLPHYMVPKTVVFMDELPK 536
VV D+ G+ AF+++ + +P + ++ R RLP YMVP V +DELP
Sbjct: 376 VVLLLDDPGGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDELPL 435
Query: 537 TSTGKIQKFVLR 548
T++GK+ + LR
Sbjct: 436 TASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 110/388 (28%), Positives = 162/388 (41%), Gaps = 57/388 (14%)
Query: 184 IRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMF 241
+ DP V+ +TSG+ PKGVV HR + I + + D + T+ V L LP+F
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLN--TEDVLLGALPLF 196
Query: 242 HSNGW--CFPWAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP 298
H+ G G + DA I +LIR + T +CG P L Y
Sbjct: 197 HAFGLTVTL-LLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLR---GY--- 249
Query: 299 DKKPLKLAKP-----VHLVTAGAPP-PAAVLLRT---ESLGFKVSHGYGLTETGGIVVSC 349
+ A P + LV AGA P A R E G ++ GYG TE V+S
Sbjct: 250 ----ARNAHPEDFSSLRLVVAGAEKLPEAT--RELFEEKFGIRILEGYGATECSP-VISV 302
Query: 350 AWKRNWNLLPAAEKAKLKARQGV-KTTALTEVDVLDPKSG--VSAKRDGSTLGEIVLRGG 406
N P K V + EV ++ P++ + G +++RG
Sbjct: 303 ------NT-PMGNKP-----GTVGRPLPGIEVRIVSPETHEELPIGEGG----LLLVRGP 346
Query: 407 CIMLGYLKDPIGTR-KCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465
+M GYL + T + DGW+ TGD+G + DG+L I R K GGE +S V
Sbjct: 347 NVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAV 406
Query: 466 ESVLYSNPAVNEA-AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYM 523
E +L + A V PDE GE + +E+ R LP+
Sbjct: 407 EELLSEILPEDSLHAAVEVPDEKKGEKIVLLTTT-----EDLDPEELNAILREAGLPNLA 461
Query: 524 VPKTVVFMDELPKTSTGKIQKFVLREIA 551
VP+ ++ +DE+P +GK L+++A
Sbjct: 462 VPRKILHVDEIPLLGSGKTDYRGLKKLA 489
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 5e-29
Identities = 111/385 (28%), Positives = 160/385 (41%), Gaps = 59/385 (15%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT------QPVYLWTLPMFH-- 242
D L YT GTT KG + HR + + + W T V + LP++H
Sbjct: 209 DIAFLQYTGGTTGVAKGAMLTHRNL-VANMQQAHQWLAGTGKLEEGCEVVITALPLYHIF 267
Query: 243 ---SNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSN---Y 295
+NG F +GG N I D +++ T G + N L N +
Sbjct: 268 ALTANGLVF----MKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGF 323
Query: 296 RDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRN 354
D LK+ + G +V R + + G + YGLTET
Sbjct: 324 DQIDFSSLKMT-----LGGGMAVQRSVAERWKQVTGLTLVEAYGLTETS----------- 367
Query: 355 WNLLPAA--EKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST------LGEIVLRGG 406
PAA LK G + + P + K D T +GE+ ++G
Sbjct: 368 ----PAACINPLTLKEYNG-------SIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGP 416
Query: 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVE 466
+M GY K P T K M DGW +TGD+ M G++ I DR KD+I+ G N+ E+E
Sbjct: 417 QVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIE 476
Query: 467 SVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPK 526
V+ P V E A V PDE GE + K+ + T +++ + R L Y P+
Sbjct: 477 DVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPAL---TAEDVKAHARANLTGYKQPR 533
Query: 527 TVVFMDELPKTSTGKIQKFVLREIA 551
+ F ELPKT+ GKI + LR+ A
Sbjct: 534 IIEFRKELPKTNVGKILRRELRDAA 558
|
Length = 560 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-28
Identities = 130/600 (21%), Positives = 219/600 (36%), Gaps = 104/600 (17%)
Query: 11 STPLTPLVFLERAATVYGDSPSIIY-----NNITYTWSDTHHRCLQLASSLLSIGISRG- 64
P T L+RAA I Y + ++++ ++ + L ++G+ G
Sbjct: 7 GAPRTLEEALQRAAEHAPGR-GITYIDADGSEEFQSYAELLEEAERILAGLRALGLKPGD 65
Query: 65 HVVSVVSPN---VPALYE--LHFAVPFAAAVLNTINTRLDARTVSL-----LLQHCQSKL 114
V+ + N V A + L VP AV T +A L LL +
Sbjct: 66 SVILQLERNEDFVTAFWACVLGGFVPVPVAVPPTY-DEPNAAVAKLRNIWELLGSP---V 121
Query: 115 VFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174
+ D A + + L+ ++ I + A + H
Sbjct: 122 ILTDAALVAALAGLRTRA--GLEALRVLAIEELRSAPPDAPLHPA--------------- 164
Query: 175 AKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQP 232
P+ DP +L TSG+T PK VV HR I ++ ++
Sbjct: 165 ---RPD----------DPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFT--PDD 209
Query: 233 VYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASI---------IFDLIRRHGVTHMC 283
V L +P+ H G G ++ DLI R+ VT
Sbjct: 210 VSLNWMPLDHVGGIVMLHLRDVYLG----CQQIHVPTDYILADPLRWLDLIDRYRVTITW 265
Query: 284 GAPVVLNMLSNY-RDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL----GFK---VSH 335
+L++ + + L+ +++ AG A + R L G +
Sbjct: 266 APNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRP 325
Query: 336 GYGLTETG-GIVVSCAW---KRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSA 391
+G++ET G+ S + +L + L+ A+T V++ P GV+
Sbjct: 326 AFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAI 385
Query: 392 K--RDGSTL------GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYL 443
+ + L G + +RG + GY ++P + T+DGWF TGD+G +H DG L
Sbjct: 386 RIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DGRL 444
Query: 444 EIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE---AAVVARPDEFWGETPCAFVSLKE 500
I R KD+II G N + E+E+ + P V AA R + F +
Sbjct: 445 TITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTDELAVFFVPRY 504
Query: 501 GSKSKPTEKEMIEYCRGRL-------PHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
+ ++ R + P Y++P + ++ PKTS GKIQ+ LR+ E
Sbjct: 505 DLDDRLA--ALLRAIRTHVARKIGIAPAYVIP---LAKEDFPKTSLGKIQRAQLRKRFEA 559
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 124/525 (23%), Positives = 182/525 (34%), Gaps = 147/525 (28%)
Query: 24 ATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA 83
A V + ++ N+ TW R QLA+ G+ G V++ N P + A
Sbjct: 13 AQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72
Query: 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVL 143
+ A + +N +L + LL +DF L
Sbjct: 73 LLQCGARVLPLNPQLPQPLLEELLPSLT-----LDF----------------------AL 105
Query: 144 ISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDP-----IVLNYT 198
+ + ++ + S H + + W P + L T
Sbjct: 106 VLEGENTFSALTSLHLQLVEGA--------------------HAVAWQPQRLATMTL--T 143
Query: 199 SGTTMSPKGVVHCHRGIFIVAVNTLS--------DWSVPTQPVYLWTLPMFHSNG----- 245
SG+T PK VH + A LS W L +LP+FH +G
Sbjct: 144 SGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSW--------LLSLPLFHVSGQGIVW 195
Query: 246 -WCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLK 304
W + A V + ++ G TH A +V L D +PL
Sbjct: 196 RWLYAGATLVVRDKQ----PLEQAL-------AGCTH---ASLVPTQLWRLLDNRSEPLS 241
Query: 305 LAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKA 364
L K V L GA P + + E G + GYGLTE V CA KR
Sbjct: 242 L-KAVLL--GGAAIPVELTEQAEQQGIRCWCGYGLTEMASTV--CA-KRA---------- 285
Query: 365 KLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL---------GEIVLRGGCIMLGYLKD 415
D +GV GS L GEI LRG + LGY +
Sbjct: 286 -------------------DGLAGV-----GSPLPGREVKLVDGEIWLRGASLALGYWRQ 321
Query: 416 PIGTRKCMTD-DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPA 474
G + + +GWF T D G +G L I R ++ SGGE + E+E V+ +P
Sbjct: 322 --GQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPL 378
Query: 475 VNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL 519
V + VV D +G+ P A V S S+ + E+ + +L
Sbjct: 379 VQQVFVVPVADAEFGQRPVAVVE----SDSEAAVVNLAEWLQDKL 419
|
Length = 458 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-27
Identities = 113/387 (29%), Positives = 165/387 (42%), Gaps = 60/387 (15%)
Query: 197 YTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMFHSNG-----WCFP 249
++SG+ PKGV+ H I I ++ + +++ V L +LP FHS G W P
Sbjct: 789 FSSGSEGEPKGVMLSHHNILSNIEQISDV--FNLRNDDVILSSLPFFHSFGLTVTLW-LP 845
Query: 250 WA--MAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY-RDPDKKPLKLA 306
+ V + DA I L+ +H T + G P L + Y R+ PL A
Sbjct: 846 LLEGIKVVYHPD----PTDALGIAKLVAKHRATILLGTPTFLRL---YLRNKKLHPLMFA 898
Query: 307 KPVHLVTAGA---PPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
+ LV AGA P A E G ++ GYG TET V S LP
Sbjct: 899 S-LRLVVAGAEKLKPEVADAFE-EKFGIRILEGYGATETSP-VASVN-------LPDVLA 948
Query: 364 AKLKARQGVK--TTAL----TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417
A K + G K + + V ++DP++ G G I++ G +M GYL DP
Sbjct: 949 ADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELP-PGED-GLILIGGPQVMKGYLGDPE 1006
Query: 418 GTRKCMTD---DGWFYTGDVGVMHSDGYLEIKDR----SKDVIISGGE--NLSSVEVE-S 467
T + + D GW+ TGD G + DG+L I DR +K I GGE L +VE E +
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAK--I--GGEMVPLGAVEEELA 1062
Query: 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKT 527
V AV A PDE GE + + ++ + E LP+ P
Sbjct: 1063 KALGGEEV-VFAVTAVPDEKKGEKLVVLHTCGAEDVEE-LKRAIKE---SGLPNLWKPSR 1117
Query: 528 VVFMDELPKTSTGKIQKFVLREIAENM 554
++ LP +GK+ L+E+A +
Sbjct: 1118 YFKVEALPLLGSGKLDLKGLKELALAL 1144
|
Length = 1146 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 124/543 (22%), Positives = 197/543 (36%), Gaps = 101/543 (18%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
T T+ + C Q A + L +G+ R H V ++ N P + FA + I T
Sbjct: 8 TLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTN 67
Query: 99 DARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHH 158
+ + ++ ++ VD + A+ P LK ++ + +
Sbjct: 68 SPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLK---AIIQYREP-----LKEKE 119
Query: 159 PN-ISDDQFFSTYESLVAKG-DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI- 215
PN S +F S+ + D E +P L YTSGTT PKGV+ H I
Sbjct: 120 PNLYSWKEFMELGRSIPDEQLDAIIESQKPN---QCCTLIYTSGTTGMPKGVMLSHDNIT 176
Query: 216 FIV-AVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP-WAMAAVGGTNICIRKFDA---SII 270
+ A D Q + LP+ H W +VGG + + DA +++
Sbjct: 177 WTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGC-VYFAQPDALKGTLV 235
Query: 271 FDLIRRHGVTHMCGAPVVLN-----------------------------------MLSNY 295
+R T G P V M
Sbjct: 236 -KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGES 294
Query: 296 RDPD-------------KKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTET 342
P +K L L + T AP L SL + YG++ET
Sbjct: 295 PPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSET 354
Query: 343 GGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIV 402
G +N+ LL K E + +P + DG GEI
Sbjct: 355 SGPHTVSN-PQNYRLLSCG-----------KALPGCETKIHNPDA------DGI--GEIC 394
Query: 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVII-SGGENLS 461
+ G + +GYL T + + +DGW ++GD+G + DG+L I R K++II +GGEN+
Sbjct: 395 IWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVP 454
Query: 462 SVEVESVLYSN-PAVNEAAVVARPDEFWGETPCAFVSLK---EGSKSKPTEK---EMIEY 514
V +E + P ++ A +V +F ++LK + +P + E IE+
Sbjct: 455 PVPIEEAVKKELPIISNAMLVGDKRKFL----SMLLTLKCEVDPETGEPLDNLTEEAIEF 510
Query: 515 CRG 517
CR
Sbjct: 511 CRL 513
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-25
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGE 458
GEIV+R ++ GY P T + + D GW +TGD+G + G+L R K+++ G
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRD-GWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGM 473
Query: 459 NLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR 518
++ EVE++L +PAV +AVV RPD G+ P AFV LK G+ T + +CR
Sbjct: 474 SVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADL--TAAALQAWCREN 531
Query: 519 LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552
+ Y VP + +D LP T+TGK++K L+ +AE
Sbjct: 532 MAVYKVP-EIRIVDALPMTATGKVRKQDLQALAE 564
|
Length = 567 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 142/571 (24%), Positives = 232/571 (40%), Gaps = 94/571 (16%)
Query: 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSP 72
PLT + L R A D+ ++I +++ + + LA SL GI G V
Sbjct: 26 PLTDI--LTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLG 81
Query: 73 NVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLF 132
NV Y FA+ +L V+ L H +S+L A +
Sbjct: 82 NVAEFYITFFAL-----------LKLGVAPVNALFSHQRSEL-------NAYASQI---- 119
Query: 133 PPDLKPPPLVLISD-------DDDAAVSSQSHHPNIS-----DDQFFSTYESLVAKGDPE 180
P +LI+D DDD + + H ++ +D + + + +
Sbjct: 120 ------EPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINHPAED 173
Query: 181 FEWIRPRTEWDPIVLNYTSG-TTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWT 237
F P + D + SG +T +PK + H + + + ++ T+ YL
Sbjct: 174 F-TATP-SPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTR--YLCA 229
Query: 238 LPMFHSNGWCFPWAMAA--VGGTNICIRKFDASIIFDLIRRHGVTHMCGAP--VVL---- 289
LP H+ P A+ GGT + A++ F LI +H V P V L
Sbjct: 230 LPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQA 289
Query: 290 NMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVS 348
R LKL L GA + R LG ++ +G+ E G+V
Sbjct: 290 IAEGGSRA-QLASLKL-----LQVGGARLSETLARRIPAELGCQLQQVFGMAE--GLV-- 339
Query: 349 CAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVL 403
N+ L +++ ++ QG + EV V D DG+ L G ++
Sbjct: 340 -----NYTRLDDSDE-RIFTTQGRPMSPDDEVWVAD--------ADGNPLPQGEVGRLMT 385
Query: 404 RGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSV 463
RG GY K P +G++ +GD+ + DGY+ + R KD I GGE +++
Sbjct: 386 RGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAE 445
Query: 464 EVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHY 522
E+E++L +PAV AA+V+ DE GE CAF+ +KE K+ + + R + + +
Sbjct: 446 EIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRR----FLREQGIAEF 501
Query: 523 MVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
+P V +D LP T+ GK+ K LR+ +
Sbjct: 502 KLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 532
|
Length = 536 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-25
Identities = 120/519 (23%), Positives = 202/519 (38%), Gaps = 70/519 (13%)
Query: 52 LASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQ 111
LA+ L + +SRG V V+S N P Y A A+ + L + Q
Sbjct: 54 LAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITD 113
Query: 112 SKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171
V S+ A S P L P++ + S H + +
Sbjct: 114 PAAALVAPGSKM----ASSAVPEALHSIPVIAVDIAAVTRESE--HSLDAA--------- 158
Query: 172 SLVAKGDPEFEWIRPRTEW-----DPIVLNYTSGTTMSPKGVVHCHRGIF----IVAVNT 222
DP+ + +TSGTT PK V+ +R F I+
Sbjct: 159 -------------SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG 205
Query: 223 LS--DWSVPTQPVYLWTLPMFHSNG-WCFPWAMAAVGGTNICIRKFD-ASIIFDLIRRHG 278
L+ W V + Y LP H G W W + + +C+ + + + +++ +
Sbjct: 206 LNWVTW-VVGETTYS-PLPATHIGGLW---WILTCLMHGGLCVTGGENTTSLLEILTTNA 260
Query: 279 VTHMCGAPVVLNMLSN---YRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSH 335
V C P +L+ L + + L+L + G+ AA + E+ G + +
Sbjct: 261 VATTCLVPTLLSKLVSELKSANATVPSLRL-----VGYGGSRAIAADVRFIEATGVRTAQ 315
Query: 336 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDG 395
YGL+ETG + C + +++ A + GV L D + P + +
Sbjct: 316 VYGLSETGCTAL-CLPTDDGSIVKIEAGAVGRPYPGVDVY-LAATDGIGPTAPGAG--PS 371
Query: 396 STLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIS 455
++ G + ++ MLGY +P T + + D GW TGD+ DG+ IK RS ++II
Sbjct: 372 ASFGTLWIKSPANMLGYWNNPERTAEVLID-GWVNTGDLLERREDGFFYIKGRSSEMIIC 430
Query: 456 GGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYC 515
GG N++ EV+ + V EAA PDE +G A V L + ++ E
Sbjct: 431 GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFG----ALVGLAVVASAELDESAARALK 486
Query: 516 RGRLPHY-------MVPKTVVFMDELPKTSTGKIQKFVL 547
+ P T+V + ++P+T +GK+ + L
Sbjct: 487 HTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASL 525
|
Length = 540 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 137/579 (23%), Positives = 217/579 (37%), Gaps = 130/579 (22%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN----VPALYELHFA----VPFAAAVLN 92
T+++ R +A+ L ++G + G V +++P V A + +A VP
Sbjct: 25 TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPP--- 80
Query: 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAV 152
R AR ++L ++ V A +R A++ L L++ +DD A
Sbjct: 81 RRLGRHLARLAAILAD-AGARAVLTTSAVLAALRAALAAPAALL---LLLIAADDLAALA 136
Query: 153 SSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCH 212
++ P D D L YTSG+T +PKGV+ H
Sbjct: 137 AADWRPPPPDPD--------------------------DIAFLQYTSGSTGAPKGVMVTH 170
Query: 213 RGIFIVAVNTLSD-WSVPTQPV-YLWTLPMFHSNGWCFPWAMAAVGGTNICI-RKFDASI 269
+ + + ++ + + V W LP++H M +GG + F +
Sbjct: 171 GNL-LANLRAIARAFGLDPDDVGVSW-LPLYHD--------MGLIGGLLQPLYAGFPVVL 220
Query: 270 I----F--------DLIRRHGVTHMCGAPVVLN-----MLSNYRDPDKKPLKLAKPVHLV 312
+ F + I R+ T GAP N + RD L L+
Sbjct: 221 MSPLAFLRRPLRWLEAISRYRATVS-GAP---NFAYDLCVRRVRDEQLAGLDLS---SWR 273
Query: 313 TA--GAPPPAAVLLRTESL----------GFK---VSHGYGLTETGGIVVSCAWKRNWNL 357
A GA P +R ++L GF+ YGL E + VS +
Sbjct: 274 VAFNGAEP-----VRADTLERFAERFAPAGFRPEAFLPCYGLAEAT-LAVSGGPPGAGPV 327
Query: 358 LPAAEKAKLK-------ARQGVKTTAL---------TEVDVLDPKSGVSAKRDGSTLGEI 401
+ ++ L A G L EV ++DP++ DG +GEI
Sbjct: 328 VLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPETRR-PLPDG-EVGEI 385
Query: 402 VLRGGCIMLGYLKDPIGTRKCM------TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIS 455
+RG + GY P T + + GW TGD+G +H DG L + R KD+II
Sbjct: 386 WVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLKDLIII 444
Query: 456 GGENLSSVEVE-SVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEY 514
G N ++E +V ++PA+ A A + GE V+ + E
Sbjct: 445 RGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEA 504
Query: 515 CRGRL--PHYMVPKTVVF--MDELPKTSTGKIQKFVLRE 549
R + H + P VV LPKTS+GKIQ+ RE
Sbjct: 505 IRAAVAREHGVAPADVVLVRPGTLPKTSSGKIQRRACRE 543
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (266), Expect = 5e-24
Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483
T G ++TGD DGY I R DV+ G L + E+ES L ++P V EAAVV R
Sbjct: 480 TFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGR 539
Query: 484 PDEFWGETPCAFVSLKEG-SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
PD+ G+ AFV+LK G S KE+ + R + P + F LPKT +GKI
Sbjct: 540 PDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKI 599
Query: 543 QKFVLREIAEN 553
+ +LR+IAE
Sbjct: 600 MRRILRKIAEG 610
|
Length = 637 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-22
Identities = 109/470 (23%), Positives = 170/470 (36%), Gaps = 91/470 (19%)
Query: 41 TWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLD 99
T+ + R +LA L + G+ G V+V+ L AV A A ++
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 100 ARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159
A ++ +L+ ++L+ D + + V P + PL L + DD A
Sbjct: 61 AERLAFILEDAGARLLLTDSALASRLAGLV---LPVILLDPLELAALDDAPAP------- 110
Query: 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVA 219
A P+ D + YTSG+T PKGVV HR +
Sbjct: 111 -----------PPPDAPSGPD----------DLAYVIYTSGSTGRPKGVVVTHRSL---- 145
Query: 220 VNTLSD----WSVPTQPVYLWTLPMFHSNGW---CFPWAMAAVGGTNICI-----RKFDA 267
VN L+ + + L F S + A + G + + + DA
Sbjct: 146 VNLLAWLARRYGLDPDDRVL----QFASLSFDASVEEIFGALLAGATLVVPPEDEERDDA 201
Query: 268 SIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE 327
+++ LI H VT + P +L +L+ P L+ ++ G A++ R
Sbjct: 202 ALLAALIAEHPVTVLNLTPSLLALLAAALPPALASLR-----LVILGGEALTPALVDRWR 256
Query: 328 SLGFKVS--HGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV-KTTALTEVDVLD 384
+ G + YG TET V + A ++ + + A T + VLD
Sbjct: 257 ARGPGARLINLYGPTET---TVWSTATL-----VDPDDAPRESPVPIGRPLANTRLYVLD 308
Query: 385 PKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGW-------FY-TGDVGV 436
G GE+ + G + GYL P T + D + Y TGD+
Sbjct: 309 DDLRPVP--VGVV-GELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVR 365
Query: 437 MHSDGYLEIKDRSKD-VIISG-----GENLSSVEVESVLYSNPAVNEAAV 480
DG LE R D V I G G E+E+ L +P V EA V
Sbjct: 366 YLPDGNLEFLGRIDDQVKIRGYRIELG------EIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-22
Identities = 102/388 (26%), Positives = 144/388 (37%), Gaps = 96/388 (24%)
Query: 197 YTSGTTMSPKGVVHCHRGI--F---------------IVAVNTLS-DWSVPTQPVYLWTL 238
YTSG+T PKGV HR + F ++AV T+S D SV L
Sbjct: 100 YTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVTTISFDISV---------L 150
Query: 239 PMFHSNGWCFPWAMAAVGGTNI----CIRKFDASIIFDLIRRHGVTHMCGAPVVLNML-- 292
+ P G T + + D + LI +T M P ML
Sbjct: 151 ELL------LPLL---SGATVVIASAETVR-DPERLARLIADERITIMQATPATWRMLLA 200
Query: 293 SNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWK 352
+ +R + + + G P + R S G ++ + YG TET W
Sbjct: 201 AGWRGR--------ESLTALCGGEALPRDLAERLLSTGAELWNMYGPTET------TIWS 246
Query: 353 RNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDG-----STLGEIVLRGGC 407
+ A + A T+V VLD D GE+ + G
Sbjct: 247 TCARVTAADGPVTIGRPI-----ANTQVYVLD--------EDLQPVPPGVPGELYIGGDG 293
Query: 408 IMLGYLKDPIGTRKCMTDDG-------WFYTGDVGVMHSDGYLEIKDRSKD-VIISG--- 456
+ GYL P T + D + TGD+ DG LE R+ D V I G
Sbjct: 294 VARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRI 353
Query: 457 --GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEY 514
GE +E+ L ++P V +A VV R + + A+V K G+ P + +
Sbjct: 354 ELGE------IEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAA--PDAEALRAA 405
Query: 515 CRGRLPHYMVPKTVVFMDELPKTSTGKI 542
R LP YMVP V +DELP T GK+
Sbjct: 406 LRATLPAYMVPAAFVQLDELPLTPNGKV 433
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 142/590 (24%), Positives = 210/590 (35%), Gaps = 111/590 (18%)
Query: 21 ERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYEL 80
E+ A V S + T T+ H AS+L ++G+ RG V + P + E
Sbjct: 67 EQLALVTVSSETGQER--TLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIA---EA 121
Query: 81 HFA------------VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA----- 123
FA V F +++ R+D T L+ V D R
Sbjct: 122 VFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLI--------VSADAGMRGGKVIP 173
Query: 124 ---LVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
L+ A++ PPP VL+ D A + D ++ +
Sbjct: 174 YKPLLDAAIAE---AQHPPPHVLLVDRGLAPMRLIPGR-----DVDYAALRTQHEDAQVP 225
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240
EW+ +P + YTSGTT PKGV G + VA+ S+ M
Sbjct: 226 VEWLESN---EPSYILYTSGTTGKPKGVQR-DVGGYAVALAL----SMWAIFGIRAGQVM 277
Query: 241 FHSN--GWCFP-----WAMAAVGGTNICIRKF----DASIIFDLIRRHGVTHMCGAPVVL 289
F ++ GW +A G + D + + ++ R+GV M AP +
Sbjct: 278 FSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAI 337
Query: 290 NMLSNYRDPDKKPLKLAKPVHLVTAGAP--PPAAVLLRTESLGFKVSHGYGLTETGGIVV 347
+L + L+ L AG P P A + T+ LG V Y TETG
Sbjct: 338 RVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWI-TDGLGKPVIDNYWQTETG---- 392
Query: 348 SCAWKRNWNLLPAAEKAKLKARQ----GVKTTALTEVDVLDPKSG--VSAKRDGSTLGEI 401
W +L LK + G+ + VLD +G G
Sbjct: 393 -------WPVLAIMPGLDLKPVKLGSPGLPMYGY-HLRVLDEATGRPCGPNEKGVLTVVP 444
Query: 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTG-------------DVGVMHSDGYLEIKDR 448
L GC+ DD F D G+ DGY I R
Sbjct: 445 PLPPGCL-----------STVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGR 493
Query: 449 SKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK--- 505
+ DVI G L + E+E + S+P+V E AVV DE G+ F LKE +
Sbjct: 494 TDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAH 553
Query: 506 ---PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552
E M++ +L P V F+ LPKT +GK+ + ++ +AE
Sbjct: 554 DPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAE 603
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 8e-21
Identities = 120/428 (28%), Positives = 174/428 (40%), Gaps = 35/428 (8%)
Query: 128 AVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQF---FSTYESLVAKGDP----- 179
AV L D+ P SD AA+ + ++D++F + + VA DP
Sbjct: 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAGA 163
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCH--RGIFIVAVNTLSDWSVPTQPVYLWT 237
E RP ++ TSGTT PKGV R V V L + T
Sbjct: 164 EESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVA 223
Query: 238 LPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD 297
+PMFH G A+GGT + R FDA H PVVL +
Sbjct: 224 MPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPP 283
Query: 298 P--DKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETG-GIVVSCAWKRN 354
+ PL + V + + P ++ G + +GYG TE G G + + A R+
Sbjct: 284 RVRARNPLPQLRVV-MSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRD 342
Query: 355 WNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLK 414
P K A V +LD + R G I + G Y
Sbjct: 343 A---PETVG---------KPVAGCPVRILDRNNRPVGPR---VTGRIFVGGELAGTRYTD 387
Query: 415 DPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPA 474
G K + D G TGD+G + + G L I R D+IISGGEN+ VE+ L ++PA
Sbjct: 388 ---GGGKAVVD-GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPA 443
Query: 475 VNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDEL 534
V + AV+ PDE +G AFV L GS ++ +Y + R+ + P+ + + +
Sbjct: 444 VADNAVIGVPDERFGHRLAAFVVLHPGSGVDAA--QLRDYLKDRVSRFEQPRDINIVSSI 501
Query: 535 PKTSTGKI 542
P+ TGK+
Sbjct: 502 PRNPTGKV 509
|
Length = 516 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 9e-21
Identities = 102/410 (24%), Positives = 164/410 (40%), Gaps = 75/410 (18%)
Query: 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP 232
L+A P + + DP V+ +TSG+ +PKGVV HR + + +
Sbjct: 777 LLAGRFPLVYFCNRDPD-DPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPED 835
Query: 233 VYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKF------DASIIFDLIRRHGVTHMCGAP 286
LP+FHS G + + G ++ F II +LI T + G
Sbjct: 836 KVFNALPVFHSFGLTGGLVLPLLSG----VKVFLYPSPLHYRIIPELIYDTNATILFGTD 891
Query: 287 VVLNMLSNYRDP-DKKPLKLAKPVHLVTAGAPPPAAVLLRT--ESLGFKVSHGYGLTETG 343
LN + Y P D + L+ V AGA +T E G ++ GYG+TET
Sbjct: 892 TFLNGYARYAHPYDFRSLRY------VFAGAEKVKEETRQTWMEKFGIRILEGYGVTETA 945
Query: 344 GIVVSCAWKRNWNLLPAAEKA--------KLKARQGVKTTALTEVDVLDPKSGVSAKRDG 395
V++ P KA ++ R L+P G+ +G
Sbjct: 946 P-VIALN-------TPMHNKAGTVGRLLPGIEYR-------------LEPVPGID---EG 981
Query: 396 STLGEIVLRGGCIMLGYLK-DPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVII 454
G + +RG +MLGYL+ + G + DGW+ TGD+ + +G++ IK R+K
Sbjct: 982 ---GRLFVRGPNVMLGYLRAENPGVLE-PPADGWYDTGDIVTIDEEGFITIKGRAKRFAK 1037
Query: 455 SGGENLSSVEVESVLYSNPAVNEA------AVVARPDEFWGETPCAFVSLKEGSKSKPTE 508
GE +S VE E A V+ PD GE + + +++
Sbjct: 1038 IAGEMISLAAVEE------LAAELWPDALHAAVSIPDARKGERIILLTTASDATRA---- 1087
Query: 509 KEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557
+ + + MVP ++ +DE+P TGKI + ++AE +
Sbjct: 1088 -AFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAAK 1136
|
Length = 1140 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-20
Identities = 154/602 (25%), Positives = 224/602 (37%), Gaps = 169/602 (28%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA------------VPF 86
TYT+ H ++A+ L S+G+ RG V + P + E FA V F
Sbjct: 84 TYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIA---EAAFAMLACARIGAIHSVVF 140
Query: 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA--------LVREAVSLFPPDLKP 138
+++ R+D L+ V D SR L+ EA++L
Sbjct: 141 GGFASHSLAARIDDAKPVLI--------VSADAGSRGGKVVPYKPLLDEAIALAQ---HK 189
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPR-------TEW- 190
P VL+ D A + VA D ++ +R + EW
Sbjct: 190 PRHVLLVDRGLAP-------------------MARVAGRDVDYATLRAQHLGARVPVEWL 230
Query: 191 ---DPIVLNYTSGTTMSPKGVVHCHR--GIFIVAVNTLSDWSVPTQP--VYLWTLPMFHS 243
+P + YTSGTT PKGV R G + VA+ T D + + S
Sbjct: 231 ESNEPSYILYTSGTTGKPKGV---QRDTGGYAVALATSMDTIFGGKAGETFFCA-----S 282
Query: 244 N-GWCFPWAMAAVGGTNIC-----------------IRKFDASIIFDLIRRHGVTHMCGA 285
+ GW VG + I R DA I + ++ ++ V M A
Sbjct: 283 DIGW-------VVGHSYIVYAPLLAGMATIMYEGLPTRP-DAGIWWRIVEKYKVNRMFSA 334
Query: 286 PVVLNMLSNYRDP------DKKPLKLAKPVHLVTAGAP---PPAAVLLRTESLGFKVSHG 336
P + +L DP D L+ L AG P P A+ + +E+LG V
Sbjct: 335 PTAIRVLKKQ-DPALLRKHDLSSLR-----ALFLAGEPLDEPTASWI--SEALGVPVIDN 386
Query: 337 YGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA-RQGVKTTALT--EVDVLDPKSGVSAKR 393
Y TETG W +L A + + R G + V +L+ +G
Sbjct: 387 YWQTETG-----------WPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGP 435
Query: 394 DGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT----DDGWF---Y----------TGDVGV 436
+ G +V+ G P G CM DD F Y T D G+
Sbjct: 436 N--EKGVLVIEGPL--------PPG---CMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGI 482
Query: 437 MHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFV 496
+DGY I R+ DVI G L + E+E + S+PAV E AVV D G+ AFV
Sbjct: 483 RDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFV 542
Query: 497 SLKEGS------KSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
K+ EKE++ +L P V F+ LPKT +GK+ + ++ I
Sbjct: 543 VPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAI 602
Query: 551 AE 552
AE
Sbjct: 603 AE 604
|
Length = 629 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-20
Identities = 97/409 (23%), Positives = 161/409 (39%), Gaps = 65/409 (15%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMFHSNGW-C 247
D + ++SG+T PKGV+ H+ + I A+ ++ + ++ V+L +P+ H G
Sbjct: 107 DIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEIT--SEDVFLSWMPLTHDMGLIG 164
Query: 248 FPWAMAAVG------GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK 301
F A+G T + IR+ + D +H T + L + +K
Sbjct: 165 FHLTPTALGINQYLMPTRLFIRR--PLLWLDKASQHRATILSSPNFGYKYLLKHFKTEKI 222
Query: 302 PLKLAKPVHLVTAGAPPPAAVLLR--TESLG-FKVSH-----GYGLTETGGIVVSCAWKR 353
V L+ GA P +A L E + F + YGL E + VS
Sbjct: 223 IDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEAT-LAVSFP--- 278
Query: 354 NWNLLPAAEKAK--------LKARQGVKTTALTE------VDVLDPKSGVSAK---RDGS 396
E K LK + V+V P G + G
Sbjct: 279 -----KPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGE 333
Query: 397 -----TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKD 451
T+G I ++G + GY +P T+K +T DGW TGD+G + +G L I R+KD
Sbjct: 334 VLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKD 392
Query: 452 VIISGGENLSSVEVESVLYSNPAVNEAAVVA---RPDEFWGETPCAFVSLKEGSKS-KPT 507
+II G+N ++E V + V A ++ E FV ++ P
Sbjct: 393 IIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQSLDDFTPL 452
Query: 508 EKEM---IEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
++ + G +++P +PKT++GKIQ++ L + N
Sbjct: 453 ALKIKRHVNKKMGLNIDHVIPVR-----SIPKTTSGKIQRYKLAQQFLN 496
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 5e-20
Identities = 64/290 (22%), Positives = 109/290 (37%), Gaps = 39/290 (13%)
Query: 5 KPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRG 64
P S E AA + D P++++ + + ++++ + R + A + G+ +G
Sbjct: 32 TPDSKRSLGDV----FEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKG 87
Query: 65 HVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHC----QSKLVFVDFH 120
VV+++ N P + AV+ +NT+ +L H +K + V
Sbjct: 88 DVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQ----RGAVLAHSLNLVDAKHLIVG-- 141
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
+ EA DL PP + ++ D P +D + + +P
Sbjct: 142 --EELVEAFEEARADLARPPRLWVAGGDTLD------DPEGYED--LAAAAAGAPTTNPA 191
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHR------GIFIVAVNTLSDWSVPTQPVY 234
T D YTSGTT PK V H G F + P +Y
Sbjct: 192 --SRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLR-----LTPDDVLY 244
Query: 235 LWTLPMFHSNGWCFPWAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHMC 283
LP++H+ G W+ G + + RKF AS +D +RR+ T
Sbjct: 245 C-CLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQ 293
|
Length = 600 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-19
Identities = 105/390 (26%), Positives = 142/390 (36%), Gaps = 85/390 (21%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250
D + YTSG+T PKGV HR A L W +F +
Sbjct: 106 DLAYVIYTSGSTGRPKGVAIEHRN----AAALLQ-----------WAAAVFSAE------ 144
Query: 251 AMAAV-GGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVL--NMLSNYRDPDKKPLKLAK 307
+A V T+IC FD S+ F++ V G VVL N L+ P K + L
Sbjct: 145 ELAGVLAATSIC---FDLSV-FEIF----VPLSTGGRVVLADNALALPDLPAKAEVTLIN 196
Query: 308 PV-----HLVTAGAPPPAA--VLLRTESL-------------GFKVSHGYGLTETGGIVV 347
V L+ A P + V L E L +V + YG +E
Sbjct: 197 TVPSAARELLRHDALPSSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYST 256
Query: 348 SCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPK-----SGVSAKRDGSTLGEIV 402
+ P A + R A T+ VLD GV GE+
Sbjct: 257 YAE------VEPGASRTPSIGR----PLAGTQAYVLDAHLQPVPVGVP--------GELY 298
Query: 403 LRGGCIMLGYLKDPIGT-------RKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKDVII 454
+ G + GYL P T + Y TGD+ +DG LE R D +
Sbjct: 299 IGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVK 358
Query: 455 SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEY 514
G + E+E+ L S P V EA VVA D A++ G+ +++
Sbjct: 359 VRGFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAA--IDIEDLRAR 416
Query: 515 CRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
RLP YMVP V +D LP T GKI +
Sbjct: 417 LATRLPAYMVPSRFVRLDALPLTPNGKIDR 446
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 4e-19
Identities = 120/499 (24%), Positives = 183/499 (36%), Gaps = 88/499 (17%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDA 100
T+ + + LQ+ S+L + G G V + N P A + + + L
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGP 137
Query: 101 RTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160
V ++ H + VFV ++E L PD K + + +S +
Sbjct: 138 GAVDYIVDHAEIDFVFV---QDKKIKE---LLEPDCKSAKRLKAIVSFTSVTEEESDKAS 191
Query: 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRG--IFIV 218
+ +S + + G P D + YTSGT+ PKGVV H F+
Sbjct: 192 QIGVKTYS-WIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVR 250
Query: 219 AVNTLSDW---SVPTQPVYLWTLPMFH----SNGWCFPWAMAAVGGTNICIRKFDASIIF 271
V+ + + VYL LP+ H F A+VG D + +
Sbjct: 251 GVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVG-----YYHGDLNALR 305
Query: 272 DLIRRHGVTHMCGAPVVL-------------------------------NMLSNYRDPDK 300
D + T + G P V M Y
Sbjct: 306 DDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKA 365
Query: 301 KPL-----------KLAKPVHLVTAGAPPPAAVL---LRTESLGFKVSHGYGLTETGGIV 346
P+ KL + L+ +G P + + LR S F V GYGLTET G
Sbjct: 366 SPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAF-VVQGYGLTETLGPT 424
Query: 347 VSCAWKRNWNLLPAAEKAKLKARQGVKTT----ALTEVDVLDPKSGVSAKRDGSTLGEIV 402
P ++ + G L EV P+ G + GEI
Sbjct: 425 TLG--------FP--DEMCMLGTVGAPAVYNELRLEEV----PEMGYDPLGEPPR-GEIC 469
Query: 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVI-ISGGENLS 461
+RG C+ GY K+P T + M DGWF+TGD+G + +G L+I DR K++I +S GE ++
Sbjct: 470 VRGKCLFSGYYKNPELTEEVMK-DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVA 528
Query: 462 SVEVESVLYSNPAVNEAAV 480
+E+V NP V + V
Sbjct: 529 LEYLENVYGQNPIVEDIWV 547
|
Length = 660 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-18
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 30/239 (12%)
Query: 315 GAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKT 374
GAP ++L + L +++ YG+TET + + L P L
Sbjct: 239 GAPAWPSLLEQARQLQLRLAPTYGMTETASQIAT--------LKPDD---FLAGNNSSGQ 287
Query: 375 TALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDV 434
VL P + ++ + G I ++ + LGY + ++ F T D+
Sbjct: 288 -------VL-PHAQITIPA--NQTGNITIQAQSLALGYYPQILDSQGI------FETDDL 331
Query: 435 GVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCA 494
G + + GYL I R+ II+GGEN+ EVE+ + + V + V+ PD WGE A
Sbjct: 332 GYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTA 391
Query: 495 FVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
K+ S S K I + +L + PK + + +LP+ GKI + L++IA
Sbjct: 392 IYVPKDPSISLEELKTAI---KDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQ 447
|
Length = 452 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-18
Identities = 50/155 (32%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 399 GEIVLRGGCIMLGYLKDPIGT--RKCMTDDG--WFYTGDVGVMHSDGYLEIKDRSKD--V 452
GE+ + G + LGY DP T R G + TGD+G DG +E R D V
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGR-ADHQV 385
Query: 453 IISG-----GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPT 507
I G GE +E+ L +P V A VV D + AFV ++G+
Sbjct: 386 KIRGYRVELGE------IEAALARHPGVQRAVVVVVGDG-GAKALAAFVVAEDGAAVDAA 438
Query: 508 EKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
+ LP YMVP V +D LP T+ GK+
Sbjct: 439 V--LRAALAELLPAYMVPSRFVVLDALPLTANGKV 471
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 4e-18
Identities = 91/460 (19%), Positives = 164/460 (35%), Gaps = 64/460 (13%)
Query: 20 LERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79
E A D+ +++ T+++ R +LA L+S+G+ G V++++ L
Sbjct: 233 FEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVV 292
Query: 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPP 139
AV A A ++ A ++ +L+ + L+ H R L D
Sbjct: 293 ALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPGLALDD---- 348
Query: 140 PLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTS 199
L I D D + + YTS
Sbjct: 349 ALSEIPDTDPIPQALLGDALAY---------------------------------IIYTS 375
Query: 200 GTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGG 257
G+T PKGV HR + + + + L +L F ++ + A+ G
Sbjct: 376 GSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLS-FDASVFEIFGALLE-GA 433
Query: 258 TNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTA 314
+ D + + +L+ G+T + P++L +L + L++
Sbjct: 434 RLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSG 493
Query: 315 GAPPPAAVLLRTESLGFK---VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQG 371
G P A++ R L + + YG TE + + ++ A ++++ +
Sbjct: 494 GEALPLALVQRLLQLAALARRLLNLYGPTEA--TLDAPSFPI-----SAELESRVPIGRP 546
Query: 372 VKTTALTEVD-VLDPKS-GVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWF 429
V T L +D L P GV GE+ + G + LGYL P T + +
Sbjct: 547 VANTQLYILDQGLRPLPLGVP--------GELYIAGLGLALGYLNRPDLTAERFIALRLY 598
Query: 430 YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVL 469
TGD+ +DG LE R + G + E+E+ L
Sbjct: 599 RTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAAL 638
|
Length = 642 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 1e-17
Identities = 98/365 (26%), Positives = 153/365 (41%), Gaps = 33/365 (9%)
Query: 197 YTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAA 254
YTSG+T PKGV H + A + S P + F +G W
Sbjct: 2153 YTSGSTGLPKGVAVSHGALVAHCQAAGERYELS-PADCELQFM--SFSFDGAHEQWFHPL 2209
Query: 255 VGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311
+ G + IR +D ++D + RHGVT + PV L L+ + + D +P + V+
Sbjct: 2210 LNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRPPAVR--VYC 2267
Query: 312 VTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQ 370
A P A++ L E+L + +GYG TE +V WK A +
Sbjct: 2268 FGGEAVPAASLRLAWEALRPVYLFNGYGPTEA--VVTPLLWKCRPQDPCGAAYVPIGRAL 2325
Query: 371 GVKTTALTEVDV-LDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGW- 428
G + + + D+ L GE+ L G + GYL P T + D +
Sbjct: 2326 GNRRAYILDADLNLLAPGMA---------GELYLGGEGLARGYLNRPGLTAERFVPDPFS 2376
Query: 429 ------FYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482
+ TGD+ +DG +E R + G + E+E+ L ++PAV EA VVA
Sbjct: 2377 ASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVA 2436
Query: 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
+ D G+ A+V + ++ E+ + RLP YMVP V ++ LP GK+
Sbjct: 2437 Q-DGASGKQLVAYVVPDDAAEDLL--AELRAWLAARLPAYMVPAHWVVLERLPLNPNGKL 2493
Query: 543 QKFVL 547
+ L
Sbjct: 2494 DRKAL 2498
|
Length = 5163 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-16
Identities = 45/145 (31%), Positives = 61/145 (42%), Gaps = 8/145 (5%)
Query: 411 GYLKDPIGTRKCMTD-----DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465
GY D +K + D D +F TGD+ GY DR D GEN+S+ EV
Sbjct: 297 GYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEV 356
Query: 466 ESVLYSNPAVNEAAVVARPDE-FWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMV 524
E VL +P V EA V G A ++L G+ P + + +LP Y
Sbjct: 357 EEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDP--QAFAAHLDEQLPAYAR 414
Query: 525 PKTVVFMDELPKTSTGKIQKFVLRE 549
P + + T T K QK LR+
Sbjct: 415 PLFLRVQAAMETTGTFKYQKTDLRK 439
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 44/217 (20%)
Query: 300 KKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359
K L L + + AP P A++ LG + GYG+TE A+
Sbjct: 269 LKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTEN------FAY-------- 314
Query: 360 AAEKAKLKARQGVKTTALTEVD------VLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413
+ L V P GV K GEI++R +M GY
Sbjct: 315 ---------------STLNYPGDRRIGTVGKPIPGVELKISED--GEILIRSPGLMSGYY 357
Query: 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVI-ISGGENLSSVEVESVLYSN 472
KDP T + T+DGW +TGD G + DG+L+I R K++ S G+ ++ +E++L +N
Sbjct: 358 KDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSAN 417
Query: 473 PAVNEAAVVARPDEFWGET-PCAFVSLKEGSKSKPTE 508
P V + VV G P A V L E + E
Sbjct: 418 PHVEQVCVVGS-----GLPQPVALVVLSEAADPLERE 449
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 8e-16
Identities = 64/243 (26%), Positives = 94/243 (38%), Gaps = 44/243 (18%)
Query: 315 GAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKT 374
G P PA VL + G V YG++ET G C + GV
Sbjct: 160 GGPAPAPVLDAAAAAGINVVRTYGMSETSG---GCVY------------------DGV-- 196
Query: 375 TALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDV 434
P GV + + G I L G + GY + GWF T D+
Sbjct: 197 ----------PLDGVRVRVED---GRIALGGPTLAKGYRNPV--DPDPFAEPGWFRTDDL 241
Query: 435 GVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCA 494
G + DG L + R+ D I +GG + VE+ L ++PAV + AV PD+ G+ A
Sbjct: 242 GALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVA 300
Query: 495 FVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554
V G PT + + + L P+ + +DELP+ GK+ + R +
Sbjct: 301 AVVGDGG--PAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDR---RALVRRF 355
Query: 555 GSS 557
Sbjct: 356 AGE 358
|
Length = 358 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 8e-16
Identities = 96/351 (27%), Positives = 138/351 (39%), Gaps = 67/351 (19%)
Query: 161 ISDDQFFSTYESLVAKGDPEFE--WIRPRTEWDPIV-----LNYTSGTTMSPKGVVHCHR 213
ISDD ++ E +RP + + YTSG+T PKGV
Sbjct: 76 ISDDPDAASALHTPFATLGEDLYIALRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAA 135
Query: 214 GIFIVAVNTLSDWSVPTQPV-YLWTLP-------------MFHSNGWCFPWAMAAVG--G 257
+ VA +L++ +P +L LP +A +G G
Sbjct: 136 ALETVA-QSLAEAIAILEPERHLCLLPLATLLENIAGVYAPLLMGATVILVPLAELGLSG 194
Query: 258 TNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAP 317
+ D + + R + P +L L ++ + + V G
Sbjct: 195 S----SGLDPAQFVAALSRWQPHSLILVPQLLMALVAAV---EQGPLPPESLRFVAVGGA 247
Query: 318 PPAAVLL-RTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTA 376
+ LL R +LG V GYGL+E VVS N P A+ R G
Sbjct: 248 RVSPSLLQRARALGLPVYEGYGLSE-CASVVSL----N---TPGAD------RPGSVGKP 293
Query: 377 LTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGV 436
L V VS D GEI++RG +MLGYL +P T D W+ TGD+G
Sbjct: 294 LPHVQ-------VSIAND----GEILVRGS-LMLGYLGEPPAT------DDWWATGDLGH 335
Query: 437 MHSDGYLEIKDRSKDVIISG-GENLSSVEVESVLYSNPAVNEAAVV--ARP 484
+ +GYL I R K++II+ G N+S VES L PA+ +A V A+P
Sbjct: 336 LDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFGDAQP 386
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 1e-15
Identities = 99/394 (25%), Positives = 156/394 (39%), Gaps = 43/394 (10%)
Query: 178 DPEFEWIRPRTEWDPIV---------LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV 228
D + +W DP V + YTSG+T PKGV H + T + +
Sbjct: 4674 DRDEDW-EGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYEL 4732
Query: 229 -PTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCG 284
P V + F + + G ++ IR +D ++ I H VT +
Sbjct: 4733 TPDDRVLQFMSFSFDGSHEGLYHPLIN--GASVVIRDDSLWDPERLYAEIHEHRVTVLVF 4790
Query: 285 APVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSH-GYGLTETG 343
PV L L+ + + D +P L V+ A A+ L +L GYG TET
Sbjct: 4791 PPVYLQQLAEHAERDGEPPSLR--VYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTET- 4847
Query: 344 GIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403
V WK A + G ++ + + + GV+ GE+ L
Sbjct: 4848 -TVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVA--------GELYL 4898
Query: 404 RGGCIMLGYLKDPIGTRKCMTDD------GWFY-TGDVGVMHSDGYLEIKDRSKDVIISG 456
G + GYL+ P T + D G Y TGD+ +DG ++ R +
Sbjct: 4899 GGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIR 4958
Query: 457 GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEK------E 510
G + E+E+ L +PAV EA V+A+ G+ +V ++ + + E E
Sbjct: 4959 GFRIELGEIEARLREHPAVREAVVIAQEGAV-GKQLVGYVVPQDPALADADEAQAELRDE 5017
Query: 511 MIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
+ R RLP YMVP +VF+ +P T GK+ +
Sbjct: 5018 LKAALRERLPEYMVPAHLVFLARMPLTPNGKLDR 5051
|
Length = 5163 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 430 YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489
+T D+G G L R DVI G N+ +EVE V+ P V EA V D G
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAG 353
Query: 490 ETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
E A V S + ++ E+C L Y VP + + E+PK + GK+ + L E
Sbjct: 354 ERVKAKVI----SHEEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSR-KLLE 408
Query: 550 IAE 552
+ E
Sbjct: 409 LGE 411
|
Length = 414 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 80/324 (24%), Positives = 123/324 (37%), Gaps = 58/324 (17%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD-WSVPTQPVYLWTLPMFHSNGWCFP 249
DP + +TSG+T PKGVV+ HR F ++ L + + L P F G
Sbjct: 86 DPAAILFTSGSTGPPKGVVYTHR-TFAAQIDALRSLYGIREGDRDLAAFPPFALFG---- 140
Query: 250 WAMAAVGGTNI-------CIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKP 302
A+G T + D + + IR G + + G+P +L ++ Y + +
Sbjct: 141 ---PALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEENGIQ 197
Query: 303 LKLAKPVHLVTAGAPPPAAVL---LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359
L + V ++AGAP P +L + ++ YG TE LP
Sbjct: 198 LPSLRRV--LSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEA---------------LP 240
Query: 360 AA--EKAKLKARQGVKTTALTEVDVLDPKSGVSAK----RDGST-------------LGE 400
A E ++ A A V V P G+ + DG +GE
Sbjct: 241 VASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGE 300
Query: 401 IVLRGGCIMLGYLKDPIGTRKCMTDDG---WFYTGDVGVMHSDGYLEIKDRSKDVIISGG 457
I++ G + Y P T+ DG W GD+G G L R + + G
Sbjct: 301 IIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAG 360
Query: 458 ENLSSVEVESVLYSNPAVNEAAVV 481
L +V VE V +P V +A+V
Sbjct: 361 GTLFTVPVEQVFNRHPGVRRSALV 384
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-15
Identities = 110/567 (19%), Positives = 202/567 (35%), Gaps = 73/567 (12%)
Query: 1 MEQLKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIG 60
+ + P +E A + + P++++ ++++ + + +LA L++ G
Sbjct: 499 LVRWNAPATEYAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAG 558
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
+ +V + + AV A ++ ++ +L +L+ H
Sbjct: 559 VGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSH 618
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
A + L + + + D H+P ++ D
Sbjct: 619 LLAQLPVPAGL--------RSLCLDEPADLLCGYSGHNPEVALD---------------- 654
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS--VPTQPVYLWTL 238
P I YTSG+T PKGV H + V +++ + + +
Sbjct: 655 -----PDNLAYVI---YTSGSTGQPKGVAISHGAL-ANYVCVIAERLQLAADDSMLMVST 705
Query: 239 PMFHSNGWCFPWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNY 295
F A+A+ G T + DA L+ GVT + P L L
Sbjct: 706 FAFDLGVTELFGALAS-GATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQAL--L 762
Query: 296 RDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNW 355
+ + + + +R G ++ + YG TET V ++
Sbjct: 763 QASRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTET--TVGVSTYE--- 817
Query: 356 NLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLK- 414
L E+ G L + +LD +GE+ + G + GY +
Sbjct: 818 --LSDEERDFGNVPIGQPLANLG-LYILD---HYLNPVPVGVVGELYIGGAGLARGYHRR 871
Query: 415 ----------DPIGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKDVIISGGENLSSV 463
DP G D G Y TGD+ +DG +E R + G +
Sbjct: 872 PALTAERFVPDPFGA-----DGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELG 926
Query: 464 EVESVLYSNPAVNEAAVVARPDEFWGETPCAFV---SLKEGSKSKPTEKEMIEYCRGRLP 520
E+E+ L + P V EA V+A+P + G A++ ++ +G++ + T E+ R LP
Sbjct: 927 EIEARLLAQPGVREAVVLAQPGDA-GLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLP 985
Query: 521 HYMVPKTVVFMDELPKTSTGKIQKFVL 547
YMVP ++ +D LP T GK+ + L
Sbjct: 986 DYMVPAHLLLLDSLPLTPNGKLDRKAL 1012
|
Length = 3956 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 427 GWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDE 486
G++++GD DGY + R DVI G + + EVES L S+P EAAVV E
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHE 572
Query: 487 FWGETPCAFVSLKEG-SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKF 545
G+ AFV+L EG S+ K +I R ++ + P + + LPKT +GKI +
Sbjct: 573 VKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRR 632
Query: 546 VLREIA----ENMGSSSS 559
+LR+IA + +G +S+
Sbjct: 633 ILRKIASRQLDELGDTST 650
|
Length = 666 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 5e-15
Identities = 120/501 (23%), Positives = 187/501 (37%), Gaps = 98/501 (19%)
Query: 40 YTW---SDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINT 96
Y W + + +++ S++ S G++ G + N P A +
Sbjct: 75 YVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYD 134
Query: 97 RLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQS 156
L A V ++ H + + FV + + + +LK ++S D + S Q
Sbjct: 135 TLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLK----TIVSFGDVS--SEQK 188
Query: 157 HHPNISDDQFFSTYE-SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI 215
FS E SL+ D E + P+ + D + YTSGTT PKGV+ +R I
Sbjct: 189 EEAEELGVSCFSWEEFSLMGSLDCE---LPPKQKTDICTIMYTSGTTGEPKGVILTNRAI 245
Query: 216 FIVAVNT-----LSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASII 270
++T ++D + Y LP+ H + + CI K ASI
Sbjct: 246 IAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH----VYDQVIE-----TYCISK-GASIG 295
Query: 271 F---------DLIRRHGVTHMCGAPVVL-------------------------------N 290
F + ++ T CG P V N
Sbjct: 296 FWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGN 355
Query: 291 MLSNYRDPDKKPL-----------KLAKPVHLVTAGAPP-PAAV--LLRTESLGFKVSHG 336
+ + + P L V L+ +GA P P V LR S +S G
Sbjct: 356 LRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCS-VLSQG 414
Query: 337 YGLTET-GGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDG 395
YGLTE+ GG S A N+ + GV T + P+ G A D
Sbjct: 415 YGLTESCGGCFTSIA-----NVFS------MVGTVGVPMTTIEARLESVPEMGYDALSD- 462
Query: 396 STLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVI-I 454
GEI LRG + GY K T + + D GWF+TGD+G +G ++I DR K++ +
Sbjct: 463 VPRGEICLRGNTLFSGYHKRQDLTEEVLID-GWFHTGDIGEWQPNGAMKIIDRKKNIFKL 521
Query: 455 SGGENLSSVEVESVLYSNPAV 475
S GE ++ +E+ P +
Sbjct: 522 SQGEYVAVENLENTYSRCPLI 542
|
Length = 660 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-14
Identities = 96/408 (23%), Positives = 152/408 (37%), Gaps = 69/408 (16%)
Query: 178 DPEFEWIRPRTEWDPIV---------LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV 228
D E +W+ ++ +P V + YTSG+T PKG + H A+
Sbjct: 1697 DQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHG-----ALVNRLCA-- 1749
Query: 229 PTQPVY------LWTLPM---FHSNGWCFPWAMAAVGGTNICIRKFDASI----IFDLIR 275
TQ Y + F + W W + + G + I A + LI
Sbjct: 1750 -TQEAYQLSAADVVLQFTSFAFDVSVWELFWPL--INGARLVIAPPGAHRDPEQLIQLIE 1806
Query: 276 RHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG-APPPAAVLLRTESLGFK-V 333
R VT + P +L L + + PL L +V G A A+ E L +
Sbjct: 1807 RQQVTTLHFVPSMLQQLLQMDEQVEHPLSLR---RVVCGGEALEVEALRPWLERLPDTGL 1863
Query: 334 SHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKR 393
+ YG TET V +W + + G L+ +LD
Sbjct: 1864 FNLYGPTETAVDVT------HWTCRRKDLEGRDSVPIGQPIANLSTY-ILDASLNPVPIG 1916
Query: 394 DGSTLGEIVLRGGCIMLGYLK-----------DPIGTRKCMTDDGWFYTGDVGVMHSDGY 442
GE+ L G + GYL DP GT + TGD+ +DG
Sbjct: 1917 ---VAGELYLGGVGLARGYLNRPALTAERFVADPFGT----VGSRLYRTGDLARYRADGV 1969
Query: 443 LEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFV-----S 497
+E R + G + E+E+ L V EA V+A+ D G+ A+V
Sbjct: 1970 IEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQ-DGANGKQLVAYVVPTDPG 2028
Query: 498 LKEGSKSKPTEKEMI-EYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
L + +++ + ++ + + LP YMVP +VF+ +P T GK+ +
Sbjct: 2029 LVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDR 2076
|
Length = 3956 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 7e-14
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 390 SAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS 449
+A G +GEI +RG +M GYL D WF TGD+G + DG L + R+
Sbjct: 364 AAGVAGREIGEIEIRGASMMSGYLGQAPIDP-----DDWFPTGDLGYL-VDGGLVVCGRA 417
Query: 450 KDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLK-EGSKSKPTE 508
K++I G N+ E+E V V E AVVA P ++ + G
Sbjct: 418 KELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGAR 477
Query: 509 KEMIEYCRGRLPHYMVPKTVVFMD--ELPKTSTGKIQKFVLR 548
E+++ R +VP VVF+ LP+TS+GK+++ ++
Sbjct: 478 SEVVQ--RVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVK 517
|
Length = 525 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 127/574 (22%), Positives = 198/574 (34%), Gaps = 138/574 (24%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSV-------VSPNVPALYELHFAVPFAAAVLNT 93
TW + H R ++A L + G+ G V+V ++P L+ A L
Sbjct: 31 TWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLW-------MRGASLTM 83
Query: 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVS 153
++ L + + V + V++ + AA
Sbjct: 84 LHQ--PTPRTDLAVWAEDTLRVI------------------GMIGAKAVVVGEPFLAAAP 123
Query: 154 SQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHR 213
T L+A + E D ++ TSG+T SPK V H
Sbjct: 124 VLEEKGIRVL-----TVADLLAADPID---PVETGEDDLALMQLTSGSTGSPKAVQITHG 175
Query: 214 GIF--IVAVNTLSDWSVPTQPVYLWTLPMFHSNG----WCFPWAMAAVGGTNICIRKFD- 266
++ A+ +++ V T + W LP+FH G P M G + + D
Sbjct: 176 NLYANAEAMFVAAEFDVETDVMVSW-LPLFHDMGMVGFLTVP--MY-FGAELVKVTPMDF 231
Query: 267 -ASIIF--DLIRRHGVTHMCGAPVVLNMLSN--YRDPDKKPLKL---------AKPV--- 309
+ +LI ++ T +L+ R L A+P+
Sbjct: 232 LRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPA 291
Query: 310 ---HLVTAGAP---PPAAVLLRTESLGFKVSHGYGLTET----------GGIVVS--CAW 351
L+ AGA P A+L YG+ E G+VV A
Sbjct: 292 DVEDLLDAGARFGLRPEAIL-----------PAYGMAEATLAVSFSPCGAGLVVDEVDA- 339
Query: 352 KRNWNLLPAAEKAKLKARQGVKTTAL-------TEVDVLDPKSGVSAKRDGSTL-----G 399
+LL A +A + + A EV V+D DG L G
Sbjct: 340 ----DLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD--------EDGQVLPPRGVG 387
Query: 400 EIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGEN 459
I LRG + GYL G DGW TGD+G + +G + + R KDVII G N
Sbjct: 388 VIELRGESVTPGYL-TMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRN 446
Query: 460 LSSVEVESVLYSNPAVNEAAVVA-RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR 518
+ ++E V VA R D G + F E S + E + R +
Sbjct: 447 IYPTDIERAAARVEGVRPGNAVAVRLDA--GHSREGFAVAVE-SNAFEDPAE-VRRIRHQ 502
Query: 519 LPHYMV------PKTVVFMD--ELPKTSTGKIQK 544
+ H +V P+ VV + +PKT +GK+++
Sbjct: 503 VAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRR 536
|
Length = 545 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 15/192 (7%)
Query: 372 VKTTALTEVDVLDPKSG--VSAKRD--GSTLGEIVLRGGCIMLGYLKDPIGT-RKCMTD- 425
VK T++ + DPK+G V A G LG + + + GYLK+ T K + D
Sbjct: 273 VKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDV 332
Query: 426 ----DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV- 480
D W+ TGD+ +DG DR D EN+S+ EV VL + P+V EA V
Sbjct: 333 FRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVY 392
Query: 481 -VARPDEFWGETPCAFVSLKEGS--KSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKT 537
V P + G CA ++L+E S +++ T+ + + R RLP Y VP + +E+ T
Sbjct: 393 GVKVPG-YDGRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYAVPLFLRLTEEVATT 451
Query: 538 STGKIQKFVLRE 549
K QK VLR+
Sbjct: 452 GNHKQQKGVLRK 463
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 4e-13
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 22/205 (10%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
YTW+ + ++A++L S+G+ G ++++S N A+ A V + L
Sbjct: 6 EYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTL 65
Query: 99 DARTVSLLLQHCQSKLVFVDFH-SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSH 157
A T+ +L+H +K +FV ++ V P L L S D
Sbjct: 66 TAETIRYVLEHSDAKALFVGKLDDWDAMKAGV---PEGLPTIILFPYSTLKD-------- 114
Query: 158 HPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFI 217
++ L+A +P P E D + YTSGTT PKGV+
Sbjct: 115 ---------HYKWDDLLAATEPLQGRPLPEPE-DLATIVYTSGTTGQPKGVMLSFGAFAF 164
Query: 218 VAVNTLSDWSVPTQPVYLWTLPMFH 242
A T+ + L LP+ H
Sbjct: 165 AAQGTIEIIGLTPNDRLLSYLPLAH 189
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-13
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDG----WFYTGDVGVMHSDGYLEIKDRSKDVI- 453
GEIV+ G + LGY K+ T + D WFYTGD+G H DG LEI DR KD++
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVK 562
Query: 454 ISGGENLSSVEVESVLYSNPAVNEAAVVARP 484
+ GE +S +VE+ L +P V+ V A P
Sbjct: 563 LQHGEYVSLGKVEAALSVSPYVDNIMVHADP 593
|
Length = 696 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 7e-13
Identities = 90/440 (20%), Positives = 153/440 (34%), Gaps = 42/440 (9%)
Query: 123 ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFE 182
A+++ + P D + P L +D+ ++ + +GD +
Sbjct: 3126 AILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDLDRGDENYA 3185
Query: 183 WIRPRTEWDPIVLNY---TSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239
P P L Y TSG+T PKGV H + + + L
Sbjct: 3186 EANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTT 3245
Query: 240 M-FHSNGWCFPWAMAA-----VGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLS 293
F W + + + G D +++ +LI GV + P +L
Sbjct: 3246 FSFDVFVEELFWPLMSGARVVLAGPEDWR---DPALLVELINSEGVDVLHAYPSMLQAF- 3301
Query: 294 NYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKR 353
+ D K + P L + G + + YG TE
Sbjct: 3302 -LEEEDAHRCTSLKRIVCGGEALPAD---LQQQVFAGLPLYNLYGPTEA------TITVT 3351
Query: 354 NWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413
+W + + A R L+P V A LGE+ L G + GY
Sbjct: 3352 HWQCVEEGKDAVPIGRPIANRACYILDGSLEP-VPVGA------LGELYLGGEGLARGYH 3404
Query: 414 KDPIGTRKCMTDDGW------FYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVES 467
P T + D + + TGD+ +DG +E R + G + E+E+
Sbjct: 3405 NRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEA 3464
Query: 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKT 527
L +P V EA V+A G A+V ++ + + + + + LP YMVP
Sbjct: 3465 RLLEHPWVREAVVLAVD----GRQLVAYVVPEDEAGDLR--EALKAHLKASLPEYMVPAH 3518
Query: 528 VVFMDELPKTSTGKIQKFVL 547
++F++ +P T GK+ + L
Sbjct: 3519 LLFLERMPLTPNGKLDRKAL 3538
|
Length = 5163 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 7e-13
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCH-RGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP 249
DP YTSGTT PK + H R + AV P +YL LP++HSN
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYL-CLPLYHSNALTVG 140
Query: 250 WAMA-AVGGTNICIRKFDASIIFDLIRRHGVTHMC 283
W+ A A G + RKF AS + +RR+G T
Sbjct: 141 WSSALAAGASLALRRKFSASQFWPDVRRYGATAFQ 175
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 7e-13
Identities = 92/428 (21%), Positives = 152/428 (35%), Gaps = 88/428 (20%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN-----VPALYELHFAVPFAA-----AV 90
T+++ + +A +LL +G+S + ++S N + AL ++ VP A ++
Sbjct: 27 TYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYSL 86
Query: 91 LNTINTRLDARTVSLLLQHCQSKLVFVD---FHSRALVREAVSLFPPDLKPPPLVLISDD 147
L+ +L + VF + +RAL +L V+
Sbjct: 87 LSKDFAKLRH-----IFDLLTPGAVFAEDGAAFARALA----ALGLAG----VPVVAVRG 133
Query: 148 DDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNY--TSGTTMSP 205
P I+ +T + A D F + P T V Y TSG+T P
Sbjct: 134 APGG-------PAIAFAALLATPPT--AAVDAAFAAVGPDT-----VAKYLFTSGSTGLP 179
Query: 206 KGVVHCHRGIFIVAVNTLSDWSVPTQ--PVYLWTLPMFHSNGWCFPWAMAAVGGTNICI- 262
K V++ HR + W T+ PV + LP H+ G + M G + I
Sbjct: 180 KAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYID 239
Query: 263 ------RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY--RDPDKKPLKLAKPVHLVTA 314
F+ ++ +R T P ML + RD + + L A
Sbjct: 240 DGKPVPGLFEETL--RNLREVSPTVYFNVPKGFEMLVDALERDAALRRRFFKRLRLLFYA 297
Query: 315 GAPPPAAVLLRTESLGFKV-------SHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
GA P V R ++L + + G G TET W
Sbjct: 298 GAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPT-------------- 343
Query: 368 ARQGVKTTALTEVDVLDPKSGVSAK--RDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD 425
R GV + + P G K +G L E+ ++G + GY +DP T + +
Sbjct: 344 DRSGV-------IGL--PAPGTELKLVPNGGKL-EVRVKGPNVTPGYWRDPELTAEAFDE 393
Query: 426 DGWFYTGD 433
+G++ GD
Sbjct: 394 EGFYRIGD 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 84/368 (22%), Positives = 134/368 (36%), Gaps = 46/368 (12%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT------QPVYLWTLPMFHSNGWCFPW 250
YTSG+T PKG + HR A++ W V T F + W F W
Sbjct: 662 YTSGSTGKPKGAGNRHR-----ALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFW 716
Query: 251 AMAAVGGTNICIRK--FDASIIFDLIRRHGVTHMCGAPVVLN-MLSNYRDPDKKPLKLAK 307
+ + + D + + +LI R GV + P +L L + L+
Sbjct: 717 PLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVASCTSLRR-- 774
Query: 308 PVHLVTAGAPPPAAVLLRTESLGFK--VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAK 365
+V +G PA + + + + + YG TE V +
Sbjct: 775 ---IVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPI 831
Query: 366 LKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD 425
+ L V V GV GE+ L G + GY P T +
Sbjct: 832 ANLACYILDANLEPVPV-----GVL--------GELYLAGRGLARGYHGRPGLTAERFVP 878
Query: 426 DGW------FYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479
+ + TGD+ +DG +E R + G + E+E+ L +P V EAA
Sbjct: 879 SPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAA 938
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTST 539
V+A G+ +V L+ S+ + + + LP YMVP + ++ LP T
Sbjct: 939 VLAVD----GKQLVGYVVLE--SEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPN 992
Query: 540 GKIQKFVL 547
GK+ + L
Sbjct: 993 GKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-12
Identities = 84/366 (22%), Positives = 136/366 (37%), Gaps = 36/366 (9%)
Query: 197 YTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAA 254
YTSG+T PKGV H + + + + + V L+ F F W +
Sbjct: 3244 YTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDR-VLLFMSFSFDGAQERFLWTLIC 3302
Query: 255 VGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP-DKKPLKLAKPVH 310
G + +R +D ++ I H ++ C P L + D L
Sbjct: 3303 --GGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGADCASLD-----I 3355
Query: 311 LVTAGAPPPAAVLLRTESLGFKVS--HGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA 368
V G P A + + +GYG TE +V WK + + A A +
Sbjct: 3356 YVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEA--VVTVTLWKCGGDAVCEAPYAPI-- 3411
Query: 369 RQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDD-- 426
G + VLD + GE+ + G + GY + P T + D
Sbjct: 3412 --GRPVAGRSIY-VLDGQLNPVPV---GVAGELYIGGVGLARGYHQRPSLTAERFVADPF 3465
Query: 427 ----GWFY-TGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481
G Y TGD+ +DG +E R + G + E+E+ L +P+V EA V+
Sbjct: 3466 SGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVL 3525
Query: 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGK 541
AR G+ A+V + + ++ LP YMVP ++ + +P GK
Sbjct: 3526 ARDGA-GGKQLVAYVVPA--DPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGK 3582
Query: 542 IQKFVL 547
+ + L
Sbjct: 3583 VDRKAL 3588
|
Length = 3956 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 379 EVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMH 438
E+++ + +R +G I +RG +M GY +D D GW TGD+G +
Sbjct: 395 EIEIRNEAGMPLPER---VVGHICVRGPSLMSGYFRDEESQDVLAAD-GWLDTGDLGYL- 449
Query: 439 SDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVN--EAAVVARPDEFWGETPCAFV 496
DGYL I R+KD+II G N+ ++E + P + +AA + E GE V
Sbjct: 450 LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLV 508
Query: 497 SLKEGSKSKPTEKEMIEYCRGRLPHYM--VPKTVVFM--DELPKTSTGKIQKFVLRE 549
+ + + + L V V + LP+TS+GK+ + ++
Sbjct: 509 QCRISD---EERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKK 562
|
Length = 579 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 6e-12
Identities = 114/595 (19%), Positives = 204/595 (34%), Gaps = 86/595 (14%)
Query: 13 PLTPLVFLERAATVYGDSPSIIYNNITY-----TWSDTHHRCLQLASSLLSIGISRGHVV 67
P L + E G P+++Y + T+ TW++ + LA++L ++G+ G V
Sbjct: 83 PGARLNYAENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRV 142
Query: 68 SVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV---------- 117
S PN+P A A+ ++ + AR V Q + KL+F
Sbjct: 143 SGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKE 202
Query: 118 ---DFHSRALVREAVSLFPPDLKPP---PLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171
+ +E P L+ P + + + P I +
Sbjct: 203 HDRRDKVAEVRKEL-----PTLRAVVHIPYLGPRETEA---------PKIDGALDLEDFT 248
Query: 172 SLVAKGDPEFEWIRPRTEWD-PIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS-DWSVP 229
+ + FE + +D P+ + ++SGTT PK +VH G + + +
Sbjct: 249 AAAQAAELVFE----QLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLG 304
Query: 230 TQPVYLWTLPMFHSNGWCFPWAMAAVG---GTNICIRKFDAS-------IIFDLIRRHGV 279
+ + + GW W G G + + +D S +++D+ R G
Sbjct: 305 PGDRLFY----YTTTGWMM-WNWLVSGLATGATLVL--YDGSPGFPATNVLWDIAERTGA 357
Query: 280 THMCGAPVVLNMLSNYRDPDKKPLKL--AKPVHLVTAGAPPPAAVLLRTESLGFKVSHGY 337
T + + R P + + V + P R K
Sbjct: 358 TLFGTSAKYVMAC---RKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWL 414
Query: 338 GLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST 397
G + SC N LP +++A G+ T V DP K
Sbjct: 415 ASISGGTDICSCFAGAN-PTLP-VHIGEIQAP-GLG----TAVQSWDP----EGKPVTGE 463
Query: 398 LGEIVLRGG--CIMLGYLKDPIGT--RKCMTD--DGWFYTGDVGVMHSDGYLEIKDRSKD 451
+GE+V + + + DP G+ R D G + GD + G + I RS
Sbjct: 464 VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDS 523
Query: 452 VIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPT-EKE 510
+ G + S E+ + + V E+ + + G FV L G+
Sbjct: 524 TLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDR 583
Query: 511 MIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI-----AENMGSSSSP 560
+ R L VP ++ + +P T TGK + ++ + +N G+ +P
Sbjct: 584 IKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGTPVDNPGAIDNP 638
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 30/176 (17%)
Query: 304 KLAKPVHLVTAGAPPPAA-VL--LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLL-- 358
KL V +++GA P + V+ LR G +V GYG+TET ++ NL
Sbjct: 373 KLGGRVRFMSSGASPLSPDVMEFLRI-CFGGRVLEGYGMTETSCVISGM--DEGDNLSGH 429
Query: 359 -----PAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413
PA E KL VDV P+ +++ GEI +RG I GY
Sbjct: 430 VGSPNPACE-VKL-------------VDV--PEMNYTSEDQPYPRGEICVRGPIIFKGYY 473
Query: 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVI-ISGGENLSSVEVESV 468
KD + TR+ + +DGW +TGD+G+ G L+I DR K++ ++ GE ++ ++E+V
Sbjct: 474 KDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENV 529
|
Length = 651 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-11
Identities = 117/579 (20%), Positives = 219/579 (37%), Gaps = 111/579 (19%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
+W++ + +LA++L +G+ G V+ PNVP A A+ ++ +
Sbjct: 86 EISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDF 145
Query: 99 DARTVSLLLQHCQSKLVFVD---------FHSRALVRE-AVSLFPPDLKPPPLV--LISD 146
V + K++F R + E L P L+ +V L SD
Sbjct: 146 GVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGL--PSLEAVVVVPYLSSD 203
Query: 147 DDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWD-PIVLNYTSGTTMSP 205
AA+ + +S L E+ R +D P+ + Y+SGTT P
Sbjct: 204 AQPAAL------KFSALTLLWS----LAGDRAAPLEF--ERLPFDHPLWILYSSGTTGLP 251
Query: 206 KGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWC-FPWAMAAVG-GTNI 260
K +VH G + + D + + + + GW + W ++ + G +
Sbjct: 252 KCIVHGAGGTLLQHLKEHGLHCD--LRPGDRLFY----YTTTGWMMWNWLVSGLLSGATL 305
Query: 261 CIRKFDAS-------IIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313
+ +D S +++ L + G+T + L+ L + L+ +++
Sbjct: 306 VL--YDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILS 363
Query: 314 AGAP-PPAA-----------VLLRTESLGFKVSHGYGLTE-TGGIVVSCAWKRNWNLLPA 360
G+P PP V L + S G T+ G V LP
Sbjct: 364 TGSPLPPEGFDWVYSHVKSDVWLASIS---------GGTDICGCFVGGNPT------LP- 407
Query: 361 AEKAKLKARQ-GVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG--CIMLGYLKDPI 417
+ +++ R G+ V+ D G + +GE+V + L + DP
Sbjct: 408 VYRGEIQCRGLGMA------VEAFDE-EGKPVIGE---VGELVCTKPFPSMPLYFWNDPD 457
Query: 418 GTRKCMTD------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYS 471
G+R D G + GD + G + I RS + GG + + E+ V+
Sbjct: 458 GSR--YRDAYFDTFPGVWRHGDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEK 515
Query: 472 NPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL-----PHYMVPK 526
P V ++ VV + + E FV L+EG + +++ R + P + VP
Sbjct: 516 IPEVEDSLVVGQEVDDGDERMPLFVKLREG---VTLDDALVKRIRSAIRAALSPRH-VPA 571
Query: 527 TVVFMDELPKTSTGK-----IQKFVLREIAENMGSSSSP 560
++ + ++P T +GK ++K +L + EN+ + ++P
Sbjct: 572 EIIAVPDIPYTLSGKKVEVAVKKILLGKPVENVAALANP 610
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 90/400 (22%), Positives = 159/400 (39%), Gaps = 75/400 (18%)
Query: 184 IRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMF 241
+ D ++ +TSG+ PKGVVH H+ + + + T++D++ ++ LP+F
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFT--PNDRFMSALPLF 416
Query: 242 HSNGWCFPWAMAAVGGTNICI--RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD 299
HS G + G + + I+ +L+ T + G L NY
Sbjct: 417 HSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLG---NYA--- 470
Query: 300 KKPLKLAKP-----VHLVTAGAPP--PAAVLLRTESLGFKVSHGYGLTETGGIV---VSC 349
+ A P + V AGA + L + G ++ GYG+TE +V V
Sbjct: 471 ----RFANPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPM 526
Query: 350 AWKRNW--NLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407
A K +LP + A+L + G++ G G + L+G
Sbjct: 527 AAKPGTVGRILPGMD-ARLLSVPGIE--------------------QG---GRLQLKGPN 562
Query: 408 IMLGYLK-------------DPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVII 454
IM GYL+ + G + GW+ TGD+ G+++I+ R+K
Sbjct: 563 IMNGYLRVEKPGVLEVPTAENARGEM----ERGWYDTGDIVRFDEQGFVQIQGRAKRFAK 618
Query: 455 SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEY 514
GE +S VE + + A + D GE F + S+ T +++ +Y
Sbjct: 619 IAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFT-----TDSELTREKLQQY 673
Query: 515 CRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
R +P VP+ + ++ +LP +GK L+ + +
Sbjct: 674 AREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713
|
Length = 718 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 6e-11
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 522 YMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
Y VP+ V F+DELPKT +GKI + +LR IA
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIALG 32
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-11
Identities = 124/584 (21%), Positives = 203/584 (34%), Gaps = 129/584 (22%)
Query: 9 ANSTPLTPLV-FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVV 67
A P T L + + A D+P++ +++ + + + LA+ L G+ G V
Sbjct: 452 AVEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSV 511
Query: 68 SVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLL-QHCQSKLVFVDFHSRALVR 126
+V A+P R+V L L H A+V
Sbjct: 512 AV-------------ALP---------------RSVFLTLALH-------------AIVE 530
Query: 127 EAVSLFPPDLKPP------------PLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174
+ P D P P +LI+ D ++ D Y + +
Sbjct: 531 AGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQ-----LPRFADVPDLTSL-CYNAPL 584
Query: 175 AKGDPEFEWI-RPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL----SDWSVP 229
A + +P + +TSG+T PKGV+ I VN L + + +
Sbjct: 585 APQGAAPLQLSQPH---HTAYIIFTSGSTGRPKGVMVGQTAI----VNRLLWMQNHYPLT 637
Query: 230 TQPVYLWTLPM-FHSNGWCFPWAMAAVGGTNICIRKFDA----SIIFDLIRRHGVTHMCG 284
V L P F + W F W A G + + + +A + +GVT
Sbjct: 638 ADDVVLQKTPCSFDVSVWEFFWPFIA--GAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHF 695
Query: 285 APVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHG-YGLTETG 343
P +L P+ A + +G PA + + L H YG TE
Sbjct: 696 VPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAA 755
Query: 344 GIVVSCAWKRNWNLLPAAEKAKLKARQG-------VKTTALTEVDVLDPK-----SGVSA 391
V +W + PA + R V T L +LD + GV+
Sbjct: 756 ---VDVSW---Y---PAFGEELAAVRGSSVPIGYPVWNTGLR---ILDARMRPVPPGVA- 802
Query: 392 KRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGW------FYTGDVGVMHSDGYLEI 445
G++ L G + GYL P T D + + TGDV DG +E
Sbjct: 803 -------GDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEY 855
Query: 446 KDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP------CAFVSLK 499
RS D + G+ + E++ + + P V +A A T ++ +
Sbjct: 856 LGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQ 915
Query: 500 EGSKSKPTEKEMI-EYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
G P + + R RLP +MVP ++ +D+LP ++ GK+
Sbjct: 916 SGL---PLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKL 956
|
Length = 1296 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 86/327 (26%), Positives = 135/327 (41%), Gaps = 75/327 (22%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTL-SDWSVPTQPVYLWTLPMF--HSNGWCFPWAMA 253
+TSG+T +PKGVV+ H G+F + L D+ + + L T P+F
Sbjct: 181 FTSGSTGTPKGVVYTH-GMFEAQIEALREDYGIEPGEIDLPTFPLFALFG---------P 230
Query: 254 AVGGTNICIRKFDAS--------IIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKL 305
A+G T++ I D + +F I R+GVT++ G+P +L L Y + + L
Sbjct: 231 ALGMTSV-IPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPS 289
Query: 306 AKPVHLVTAGAPPPAAVLLRTESL---GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAE 362
+ V ++AGAP P AV+ R ++ ++ YG TE LP +
Sbjct: 290 LRRV--ISAGAPVPIAVIERFRAMLPPDAEILTPYGATEA---------------LPISS 332
Query: 363 ---KAKLKARQGVKTTALTE----VDVLDPKSGVSAK------------RDGSTL----- 398
+ L A T A T+ + V P GV + D L
Sbjct: 333 IESREILFA-----TRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI 387
Query: 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDG----WFYTGDVGVMHSDGYLEIKDRSKDVII 454
GEIV+ G + Y P TR DG W GD+G + + G L R +
Sbjct: 388 GEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVE 447
Query: 455 SGGENLSSVEVESVLYSNPAVNEAAVV 481
+ G L ++ E + ++P V +A+V
Sbjct: 448 TAGGTLYTIPCERIFNTHPGVKRSALV 474
|
Length = 552 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 33/128 (25%)
Query: 333 VSHGYGLTET---GGIVVSCAWKRNWNLLPAA-------EKAKLKARQGVKTTALTEVDV 382
V G+GLTET GGI +R +L P A + KL + K T D
Sbjct: 455 VIQGWGLTETVCCGGI------QRTGDLEPNAVGQLLKGVEMKLLDTEEYKHT-----DT 503
Query: 383 LDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGY 442
+P+ GEI+LRG + GY K TR+ + +DGWF+TGDVG + ++G
Sbjct: 504 PEPR------------GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGT 551
Query: 443 LEIKDRSK 450
L I R K
Sbjct: 552 LRIIGRVK 559
|
Length = 700 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 83/360 (23%), Positives = 141/360 (39%), Gaps = 30/360 (8%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA-AV 255
YTSG+T +PKGV H + L+D+ + +L F + A
Sbjct: 148 YTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFL-NQAPFSFDLSVMDLYPCLAS 206
Query: 256 GGTNICIRKF---DASIIFDLIRRHGVTHMCGAP--VVLNMLSNYRDPDKKPLKLAKPVH 310
GGT C+ K + ++F+ + + G+ P V + +L + + P H
Sbjct: 207 GGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYP----HLTH 262
Query: 311 LVTAGA--PPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA 368
+ G P A L + + YG TE V S + +L + +
Sbjct: 263 FLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQE--ILDQYPRLPI-- 318
Query: 369 RQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM-TDDG 427
G + ++D + GEIV+ G + GYL +P T + + +G
Sbjct: 319 --GF-AKPDMNLFIMDEEG---EPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEG 372
Query: 428 -WFY-TGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR-P 484
Y TGD G + +DG L + R I G + ++E L + + A VV +
Sbjct: 373 QPAYRTGDAGTI-TDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYN 431
Query: 485 DEFWGETPCAFVSLKEG--SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
+ E A + + K K + + + LP YM+P+ ++ D+LP T+ GKI
Sbjct: 432 KDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKI 491
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 8e-10
Identities = 96/368 (26%), Positives = 145/368 (39%), Gaps = 48/368 (13%)
Query: 197 YTSGTTMSPKGVVHCHRGIF-IVAVNTLSDWSVPTQPVYLWTLPMFHSNG-----WCFPW 250
YTSGTT PK +H H V + + L + M+ + G W FP
Sbjct: 152 YTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVW-FP- 209
Query: 251 AMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK-KPLKLAKPV 309
+A G I L R G + + G P + + PD + L+
Sbjct: 210 -LATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPDSFRSLRC---- 264
Query: 310 HLVTAG-APPPAAVLLRTESLG-FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
+V+AG A E G + G G TE G VS W
Sbjct: 265 -VVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD-EW------------ 310
Query: 368 ARQGV--KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD 425
R G + E+ V+ P G +A G++ +RG I GY P + +
Sbjct: 311 -RLGTLGRVLPPYEIRVVAP-DGTTAGPGVE--GDLWVRGPAIAKGYWNRP---DSPVAN 363
Query: 426 DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485
+GW T D + SDG++ + R+ D + GG N+ EVE ++ + AV EAAVVA +
Sbjct: 364 EGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRE 423
Query: 486 EFWGETPCAFV-----SLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
T AF+ + +GS + + ++ RL + VP +D LP+T G
Sbjct: 424 STGASTLQAFLVATSGATIDGSVMRDLHRGLLN----RLSAFKVPHRFAVVDRLPRTPNG 479
Query: 541 KIQKFVLR 548
K+ + LR
Sbjct: 480 KLVRGALR 487
|
Length = 705 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 399 GEIVLRGGCIMLGYLKDPIGTRKCM-TDDG-WFY-TGDVGVMHSDGYLEIKDRSKDVIIS 455
GEIV+ G + GYL +P T + T DG Y TGD G + DG L + R I
Sbjct: 345 GEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKL 403
Query: 456 GGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE--KEMIE 513
G + E+E L + V A VV + + A+V KE + E K + +
Sbjct: 404 NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKK 463
Query: 514 YCRGRLPHYMVPKTVVFMDELPKTSTGKI-QKFVLREI 550
+ RL YM+P+ ++ D LP T GKI +K ++ E+
Sbjct: 464 ELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEV 501
|
Length = 503 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 49/153 (32%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 410 LGYLKDPIGTRKCMTD-----DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVE 464
GY+ + +K D D F +GDV VM GYL KDR+ D GEN+S+ E
Sbjct: 327 DGYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTE 386
Query: 465 VESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEG-----SKSKPTEKEMIEY----C 515
VE +L SN E VV +G V EG + P K ++
Sbjct: 387 VEGIL-SNVLGLEDVVV------YGVE----VPGVEGRAGMAAIVDPERKVDLDRFSAVL 435
Query: 516 RGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548
LP Y P+ + + E+ KT T K+QK L+
Sbjct: 436 AKSLPPYARPQFIRLLPEVDKTGTFKLQKTDLQ 468
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 329 LGFKVSHGYGLTETGG-IVVSCAWKRNWNLL--PAAEKAKLKARQGVKTTALTEVDVLDP 385
L GYGLTET G I V A N + P + K K R A D L P
Sbjct: 485 LNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKA---TDTL-P 540
Query: 386 KSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEI 445
K GE++++ I GY + T+ T+DG+F TGD+ ++ +G L
Sbjct: 541 K------------GELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTF 588
Query: 446 KDRSKDVI-ISGGE 458
DRSK ++ +S GE
Sbjct: 589 LDRSKGLVKLSQGE 602
|
Length = 746 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 65/296 (21%), Positives = 101/296 (34%), Gaps = 48/296 (16%)
Query: 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSP 72
PLT +L A P+II+ T+++ + A+ L G+ G V+V P
Sbjct: 34 PLTE--YLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLP 91
Query: 73 NVPALYELHFAVPFAAAVLNTINT---------RLDARTVSLLLQHCQSKLVFV--DFHS 121
N P + + F + AV ++ L+ +LL +L V +
Sbjct: 92 NCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLL--ALDQLAPVVEQVRA 149
Query: 122 RALVREAVS-----LFP--PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174
+R + + P P L P + P ++ +L
Sbjct: 150 ETSLRHVIVTSLADVLPAEPTLPLPDSLRA--------------PRLAAAGAIDLLPALR 195
Query: 175 AKGDPEFEWIRPRTEWD-PIVLNYTSGTTMSPKGVVHCHRG-IFIVAVNTLSDWSVPTQP 232
A P P D LNYT GTT PKG H R ++ A
Sbjct: 196 ACTAPVPL---PPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDS 252
Query: 233 VYLWTLPMF----HSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCG 284
V+L LP F + G FP G T + + ++DA + R+ VT
Sbjct: 253 VFLSFLPEFWIAGENFGLLFP---LFSGATLVLLARWDAVAFMAAVERYRVTRTVM 305
|
Length = 567 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 84/331 (25%), Positives = 128/331 (38%), Gaps = 69/331 (20%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL-----SDWSVPTQPVYLWTLPMFHSNG 245
D + YTSGTT PKGV+ + I + + ++ ++ + VYL LP+ H
Sbjct: 224 DICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFD 283
Query: 246 WCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVL---------------- 289
G I + D ++ + + T C P VL
Sbjct: 284 RVIEECFIQHGAA-IGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGF 342
Query: 290 ---------------NMLSNYRDPDKKPL-----------KLAKPVHLVTAGAPPPAA-- 321
NM + PL L V ++ +GA P A+
Sbjct: 343 LKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV 402
Query: 322 -VLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEV 380
LR + V GYGLTE SCA + LP E L G + V
Sbjct: 403 ESFLRVVAC-CHVLQGYGLTE------SCA--GTFVSLPD-ELDML----GTVGPPVPNV 448
Query: 381 DV-LDPKSGVSAKRDGSTL-GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMH 438
D+ L+ + ST GEI +RG + GY K T++ + D GW +TGDVG
Sbjct: 449 DIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLID-GWLHTGDVGEWQ 507
Query: 439 SDGYLEIKDRSKDVI-ISGGENLSSVEVESV 468
+G ++I DR K++ +S GE ++ +E++
Sbjct: 508 PNGSMKIIDRKKNIFKLSQGEYVAVENIENI 538
|
Length = 666 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 426 DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV--VAR 483
D WF TGD+ G+ + DR D GEN+++ EVE+ L P V EA V V
Sbjct: 438 DAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEV 497
Query: 484 PD-EFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
P + G A + L +G++ + + RLP Y VP V + EL T T K
Sbjct: 498 PGTD--GRAGMAAIVLADGAEFDL--AALAAHLYERLPAYAVPLFVRLVPELETTGTFKY 553
Query: 543 QKFVLRE 549
+K LR+
Sbjct: 554 RKVDLRK 560
|
Length = 600 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 379 EVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD-DG--WFYTGDVG 435
V ++DP+S + +GEI G I GY ++P + K + DG W TGD+G
Sbjct: 380 AVLIVDPQSLEVL--GDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLG 437
Query: 436 VMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN-PAVNEAAVVARPDEFWGETP-- 492
+ DG L + R KD++I G NL ++E + V + V A GE
Sbjct: 438 FLR-DGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQGEEGIG 496
Query: 493 -CAFVSLKEGSKSKPTEKEMIEYCRGRLP--HYMVPKTVVFMD--ELPKTSTGKIQKFVL 547
A +S + K P + +I+ R + P V+ ++ LPKTS+GK+Q+
Sbjct: 497 IAAEIS-RSVQKILPPQ-ALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQRSAC 554
Query: 548 R 548
R
Sbjct: 555 R 555
|
Length = 4334 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 82/385 (21%), Positives = 145/385 (37%), Gaps = 52/385 (13%)
Query: 192 PIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWC---- 247
P+ + YTSGTT + K VV + G +V + W + + S GW
Sbjct: 256 PLYILYTSGTTGNSKAVVRSN-GPHLVGLKYY--WRSIIEKDIPTVVFSHSSIGWVSFHG 312
Query: 248 FPWAMAAVGGT------NICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK 301
F + ++G T I K +++ I +H VTH P + L DP+
Sbjct: 313 FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKT-DPEAT 371
Query: 302 PLK----LAKPVHLVTAGAPPPAAVLLRTES-LGFKVSHGYGLTETGGIVVSCAWKRNWN 356
++ L+ + G ++ E+ L K S GYG TE G + +
Sbjct: 372 IIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIG-----ITYLYCYG 426
Query: 357 LLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLR---GGCI 408
+ A +K + L+E DG L GE+ +
Sbjct: 427 HINIPYNATGVPSIFIKPSILSE--------------DGKELNVNEIGEVAFKLPMPPSF 472
Query: 409 MLGYLKDPIGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVES 467
+ K+ ++ + +Y +GD+G +GY I RS D I G + +E+
Sbjct: 473 ATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIET 532
Query: 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE-----KEMIEYCRGRLPHY 522
+ +P V E + D P + LK+ ++ + E+ +
Sbjct: 533 SILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESL 592
Query: 523 MVPKTVVFMDELPKTSTGKIQKFVL 547
V + ++ +++LPKT TGKI + ++
Sbjct: 593 AVLRKIIIVNQLPKTKTGKIPRQII 617
|
Length = 647 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
YT+++ R +LA+ LL++G+ G V+++ N P FA+ AV INT L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 99 DARTVSLLLQHCQSKLVFVD 118
++ +L H ++L+ VD
Sbjct: 63 RGEELAHILDHSGARLIVVD 82
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 95/381 (24%), Positives = 154/381 (40%), Gaps = 55/381 (14%)
Query: 195 LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWA--- 251
L YTSG+T PKGVV H I + + + + L F+S F A
Sbjct: 2338 LIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCEL----HFYSIN--FDAASER 2391
Query: 252 --MAAVGGTNICIR---KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLA 306
+ + G + +R ++ A I LIR V+ + P + L+ + + L
Sbjct: 2392 LLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAGQGEQL--- 2448
Query: 307 KPVHLVTAGAPPPAAVLLRTESLGFKVS---HGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
PV + G L+ F + YG TET VV +P A
Sbjct: 2449 -PVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTET---VV----------MPLACL 2494
Query: 364 AKLKARQGVKTTALTEV------DVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417
A + +G + + V +LD + ++ G+T GE+ + G + GY P
Sbjct: 2495 APEQLEEGAASVPIGRVVGARVAYILD--ADLALVPQGAT-GELYVGGAGLAQGYHDRPG 2551
Query: 418 GTRK------CMTDDGWFY-TGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470
T + D G Y TGD+ + +DG +E R + G + E+ES L
Sbjct: 2552 LTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLL 2611
Query: 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIE----YCRGRLPHYMVPK 526
+PAV EA V+A D G+ ++ + + + E + + +LP YMVP
Sbjct: 2612 EHPAVREAVVLAL-DTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPA 2670
Query: 527 TVVFMDELPKTSTGKIQKFVL 547
++ +D LP T+ GK+ + L
Sbjct: 2671 HLILLDSLPLTANGKLDRRAL 2691
|
Length = 4334 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 36/254 (14%)
Query: 39 TYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTR 97
T T+++ R Q+A +LL+ G+ G V+++ N PA + + +NT
Sbjct: 3 TVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTN 62
Query: 98 LDARTVSLL--LQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQ 155
+ R+ SLL + C ++++ D + EAV P L+ + + +S
Sbjct: 63 I--RSGSLLHCFRCCGARVLVAD----PELLEAVEEILPALRAMGVRVF------YLSHT 110
Query: 156 SHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI 215
S + + ++ + P + + YTSGTT PK H +
Sbjct: 111 SPPEGVIS--LLAKVDAASDEPVPA-SLRSGVSIRSTALYIYTSGTTGLPKAARISHLRV 167
Query: 216 FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICI---------RKFD 266
+ LS V V TLP++HS+G A+ + G CI KF
Sbjct: 168 -LQCSGMLSLCGVTADDVVYTTLPLYHSSG-----ALLGIVG---CIGLGATLVLKPKFS 218
Query: 267 ASIIFDLIRRHGVT 280
AS +D R++ VT
Sbjct: 219 ASQFWDDCRKYNVT 232
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 9e-07
Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 17/163 (10%)
Query: 410 LGYLKDPIGT-RKCMTD-----DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSV 463
LGY T +K + D D +F TGD+ V +L DR+ D GEN+++
Sbjct: 361 LGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATT 420
Query: 464 EVESVLYSNPAVNEAAV--VARPDEFWGETPCAFVSLKEGSKSKPTE---KEMIEYCRGR 518
EV +L + E V V P G A V LK G TE +++ ++ R
Sbjct: 421 EVADILTMVDFIQEVNVYGVTVPG-HEGRAGMAAVILKPG-----TEFDLEKLYQHVREF 474
Query: 519 LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSSSSPL 561
LP Y P+ + D + T T K QK L E N S PL
Sbjct: 475 LPAYARPRFLRIQDSMEVTGTFKQQKVRLVEEGFNPSIISDPL 517
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 399 GEIVLRGGCIMLGYLKDPIGTRK-----CMTDDG--WFYTGDVGVMHSDGYLEIKDRSKD 451
GE+ + G + GYL P T + + +DG + TGD ++DG LE R
Sbjct: 1470 GELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQ 1529
Query: 452 VIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEM 511
+ G + E+++ L + P V +AAV+ R + G + + + G +++ + +
Sbjct: 1530 QVKLRGFRVEPEEIQARLLAQPGVAQAAVLVR-EGAAGAQLVGYYTGEAGQEAEA--ERL 1586
Query: 512 IEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
LP YMVP ++ +D++P +GK+ + L E
Sbjct: 1587 KAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPE 1624
|
Length = 4334 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGW-------FYTGDVGVMHSDGYLEIKDRSKD 451
GE+ + G + GY+ DP+ T + + TGD+ SDG LE R
Sbjct: 4067 GELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDH 4126
Query: 452 VIISGGENLSSVEVESVLYSNPAVNEAAV--VARPDEFWGETPCAFVSLKEGSKSKPTEK 509
+ G + E+E+ L+ V EAAV + G+ ++ + + +
Sbjct: 4127 QVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVN---GKHLVGYLVPHQTVLA---QG 4180
Query: 510 EMIEYCRGRL----PHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550
++E + RL P YMVP +++D LP + GK+ + L +
Sbjct: 4181 ALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225
|
Length = 4334 |
| >gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 88/359 (24%), Positives = 120/359 (33%), Gaps = 88/359 (24%)
Query: 198 TSGTTMSPKGVVHCHRGIFIVA---VNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM-A 253
TSG+T +PK V H + A L + P + V +P H G+ F + +
Sbjct: 103 TSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISC-VPAHHLYGFLFSCLLPS 161
Query: 254 AVGGTNICIRKFDASIIF------DLIRRHGVTHMCGAPVVLNML--SNYRDPDKKPLKL 305
G + AS I DLI G P + L +YR P
Sbjct: 162 RRGLEAKQLAAAPASGIMRHARPGDLI--------VGTPFIWEQLADLDYRLPG------ 207
Query: 306 AKPVHLVTAGAPPPAAVLLRTESLGF-KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKA 364
V V++GAP AA + G ++ YG TETGGI + A + LLP
Sbjct: 208 ---VVGVSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREAPDDPFRLLPDLACF 264
Query: 365 KLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT 424
A +D+ D R
Sbjct: 265 ---ADTLSSAGLARRLDLQD-----------------------------------RLAWD 286
Query: 425 DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484
DG F I R +++ GG N+S V +L NP V AAV R
Sbjct: 287 KDGGF--------------TILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAV--RL 330
Query: 485 DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543
D G AF+ + E + E E+ LP P F ELP+T GK+
Sbjct: 331 D---GRRLKAFIVVAEDADEAELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386
|
This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 58/266 (21%), Positives = 88/266 (33%), Gaps = 57/266 (21%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAV---NTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253
+TSG+T PK V++ R + P PV L +P H+ G +
Sbjct: 227 FTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGL 286
Query: 254 AVGGTNICI-------RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK------ 300
GG + I F+ +I +R T P ML+ + D
Sbjct: 287 LWGGGTLYIDDGKPLPGMFEETI--RNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSF 344
Query: 301 -KPLKLAKPVHLVTAGAPPPAAVLLRTESLGFK-------VSHGYGLTETGGIVVSCAWK 352
K L+L + GA + R ++L + GYG TET W
Sbjct: 345 FKNLRL-----MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW- 398
Query: 353 RNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKR--DGSTLGEIVLRGGCIML 410
E+ L + P GV K G E+ ++G +
Sbjct: 399 -------DTERVGL---------------IGLPLPGVELKLAPVGDKY-EVRVKGPNVTP 435
Query: 411 GYLKDPIGTRKCMTDDGWFYTGDVGV 436
GY KDP T ++G++ GD
Sbjct: 436 GYHKDPELTAAAFDEEGFYRLGDAAR 461
|
Length = 624 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 93/488 (19%), Positives = 155/488 (31%), Gaps = 135/488 (27%)
Query: 10 NSTPLTPLV-----FLERAATVYGDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLSI 59
++ PL L A D + T+++ R +A +LL
Sbjct: 30 SAEPLGDYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDR 89
Query: 60 GISRGHVVSVVSPN-----VPALYELHFAVPFAA-----AVLNTINTRLDARTVSLLLQH 109
G+S + ++S N + AL ++ VP+A ++++ +L R V L+
Sbjct: 90 GLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKL--RHV---LEL 144
Query: 110 CQSKLVFVD---FHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQF 166
LVF D +RAL AV P D +V +
Sbjct: 145 LTPGLVFADDGAAFARAL--AAV--VPAD---VEVVAVRGAVPG-------RAATPFAAL 190
Query: 167 FSTYESLVAKGDPEFEWIRPRTEWDPI--VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS 224
+T + A D + P D I L +TSG+T PK V++ HR +
Sbjct: 191 LATPPT--AAVDAAHAAVGP----DTIAKFL-FTSGSTGLPKAVINTHRMLCANQQMLAQ 243
Query: 225 DWSVPTQ--PVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHM 282
+ + PV + LP H+ F + ++ +G T
Sbjct: 244 TFPFLAEEPPVLVDWLPWNHT---------------------FGGNHNLGIVLYNGGTLY 282
Query: 283 C--GAPV-------VLN-----------------MLSNY--RDPDKKPLKLAKPVHLVTA 314
G P + N ML RD + ++ L A
Sbjct: 283 IDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYA 342
Query: 315 GAPPPAAVLLRTESLGFKV-------SHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
GA V R + + G G+TET +
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLS------------- 389
Query: 368 ARQGVKTTALTEVDVLDPKSGVSAK--RDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD 425
R G + + P G K G L E+ ++G + GY + P T + +
Sbjct: 390 -RAGN-------IGL--PAPGCEVKLVPVGGKL-EVRVKGPNVTPGYWRAPELTAEAFDE 438
Query: 426 DGWFYTGD 433
+G++ +GD
Sbjct: 439 EGYYRSGD 446
|
Length = 614 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 60/215 (27%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDA 100
T+S+ R QLA+ L +G+ +G V + +P L EL A+ A A + +++
Sbjct: 122 TYSELLDRVCQLANYLKDVGVKKGDAVVIY---LPMLMELPIAM-LACARIGAVHS---- 173
Query: 101 RTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP------------PPLVLISDDD 148
+VF F + +L + V D KP P + + D
Sbjct: 174 -------------VVFAGFSAESLAQRIV-----DCKPKVVITCNAVKRGPKTINLKDIV 215
Query: 149 DAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEW------------------ 190
DAA+ +S +S TYE+ +A + +W R W
Sbjct: 216 DAALD-ESAKNGVSVGICL-TYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVD 273
Query: 191 --DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL 223
DP+ L YTSG+T PKGV+H G + T
Sbjct: 274 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTF 308
|
Length = 666 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV----PTQP--VYLWTLPMFH 242
YTSGTT PKGV+H H + + L D P + Y LP+ H
Sbjct: 271 YTSGTTGDPKGVMHTHGSL-TAGILALEDRLNDLIGPPEEDETYCSYLPLAH 321
|
Length = 700 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 73/299 (24%), Positives = 111/299 (37%), Gaps = 32/299 (10%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW--C- 247
D V+ +TSGT PKGV H + L +S V + LP FH+ G+ C
Sbjct: 184 DVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCT 243
Query: 248 -FPWAMA--AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLK 304
FP V N I ++I VT + PV + + KK
Sbjct: 244 LFPLLSGVPVVFAYN----PLYPKKIVEMIDEAKVTFLGSTPVFFDYILK---TAKKQES 296
Query: 305 LAKPVHLVTAGAPPPAAVLLRTESLGF----KVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
+ V G L E+L ++ GYG TE ++ N P
Sbjct: 297 CLPSLRFVVIGGDAFKDSL-YQEALKTFPHIQLRQGYGTTECSPVITI-----NTVNSPK 350
Query: 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL-KDPIGT 419
E +G+ ++E + SG + G ++ RG + GYL +D
Sbjct: 351 HESCVGMPIRGMDVLIVSEETKVPVSSGET--------GLVLTRGTSLFSGYLGEDFGQG 402
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
+ + W+ TGD+G + G L +K R + G E +S +ES+L N A
Sbjct: 403 FVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAA 461
|
Length = 539 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWT-LPMFHSNGWCFP 249
DP L YTSGTT PKG R V N LS P +T +P++H
Sbjct: 88 DPAALIYTSGTTGLPKGCAISWRRTL-VTSNPLSHDLNLQFPDRTYTCMPLYHGTAAFLG 146
Query: 250 WAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHM 282
G +C+ RKF AS + +R T +
Sbjct: 147 LCYCLGSGGTLCLSRKFSASQFWKDVRDSEATII 180
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 397 TLGEIVLRGGCIMLGYLKDPIGTRKCM----------TDDG-WFYTGDVGVMHSDGYLEI 445
T+GEI + G + GY + P T + T +G W TGD+G + S+G L I
Sbjct: 396 TVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFI-SEGELFI 454
Query: 446 KDRSKDVIISGGEN 459
R KD++I G N
Sbjct: 455 VGRIKDLLIVDGRN 468
|
Length = 578 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 67/288 (23%), Positives = 113/288 (39%), Gaps = 61/288 (21%)
Query: 28 GDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82
D P+II+ +W++ + LA++L ++G+ G V+ PN+P
Sbjct: 98 DDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIP-----ET 152
Query: 83 AVPF-AAAVLNTI--NTRLDARTVSLL--LQHCQSKLVFV---------DFHSRALVRE- 127
V A A L I + D +L + K++ F RA V E
Sbjct: 153 VVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAEL 212
Query: 128 AVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD-DQFFSTYESLVAKGDPEFEWIRP 186
+L P L+ +V++ AA ++ P + F + E+ + EFE +
Sbjct: 213 RAAL--PSLEH--VVVVPYLGPAAAAA--ALPGALLWEDFLAPAEA----AELEFEPVPF 262
Query: 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL---SDWSVPTQPVYLWTLPMFHS 243
P+ + Y+SGTT PK +VH H GI + + L D + + W + +
Sbjct: 263 D---HPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCD--LGPGDRFFW----YTT 313
Query: 244 NGWCFPWAMAAVG---GTNICIRKFDAS-------IIFDLIRRHGVTH 281
GW W G G + + +D S +++DL GVT
Sbjct: 314 CGWMM-WNWLVSGLLVGATLVL--YDGSPFYPDPNVLWDLAAEEGVTV 358
|
Length = 655 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 382 VLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM------------------ 423
++DP +G DG +GEI L G I GY P T +
Sbjct: 415 IVDPDTGAEL-PDG-EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAA 472
Query: 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVE-SVLYSNPAVNEAAVVA 482
D W TGD+GV + DG L I R D+I+ G N ++E +V ++P V V A
Sbjct: 473 DDGTWLRTGDLGV-YLDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTA 531
|
Length = 612 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 17/80 (21%), Positives = 37/80 (46%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98
++++ + + A +L ++G+ +G VV+++ N P A+ AV INT
Sbjct: 3 RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQ 62
Query: 99 DARTVSLLLQHCQSKLVFVD 118
++ + ++ V VD
Sbjct: 63 RGEVLAHCINVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 53/247 (21%), Positives = 86/247 (34%), Gaps = 61/247 (24%)
Query: 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVV---SPNVPALYELHFAVPFAAAVLNTIN 95
T+ + + ++A+ + G G VV++ AL+ + A++N+ N
Sbjct: 5 TFRELNEY--SNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS-N 61
Query: 96 TRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQ 155
RL++ + + ++ LI + D ++
Sbjct: 62 LRLESLLHCITVSKAKA------------------------------LIFNLLDPLLTQS 91
Query: 156 SHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCH-RG 214
S P DD F D + YTSGTT PK V H R
Sbjct: 92 STEPPSQDDVNFR----------------------DKLFYIYTSGTTGLPKAAVIVHSRY 129
Query: 215 IFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIR-KFDASIIFDL 273
I A + P VY LP++HS G A + G+ + IR KF AS +D
Sbjct: 130 YRIAAGAYYAFGMRPEDVVYD-CLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDD 188
Query: 274 IRRHGVT 280
++ T
Sbjct: 189 CVKYNCT 195
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 382 VLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM-----------------T 424
++DP++ S DG +GEI L G I GY P T
Sbjct: 404 IVDPETA-SELPDGQ-IGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPD 461
Query: 425 DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVE-SVLYSNPAVNEAAVVA 482
D W TGD GV DG L I R KD++I G N ++E + + A+ V A
Sbjct: 462 DALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAA 519
|
Length = 631 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDA 100
T+ + R ++A L + GI +G V ++ P L L FA+ AV I+ +
Sbjct: 4 TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMGR 63
Query: 101 RTVSLLLQ 108
+ + L+
Sbjct: 64 KHLGRCLE 71
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRG-IFIVAVNTLSDWS 227
TY L+A+G + RP D + YTSGTT +PKGVV H I VA ++LS
Sbjct: 200 TYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKF 259
Query: 228 VPTQPVYLWTLPMFH 242
P+ V++ LP+ H
Sbjct: 260 YPSD-VHISYLPLAH 273
|
Length = 651 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 569 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.97 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.87 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.85 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.8 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.28 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.95 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.5 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 98.02 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.87 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.72 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.58 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.78 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 88.37 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.16 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-82 Score=635.49 Aligned_cols=524 Identities=44% Similarity=0.716 Sum_probs=453.3
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHcCCC-CeEEeCC---eeeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCc
Q 044926 1 MEQLKPSPANSTPLTPLVFLERAATVYGDS-PSIIYNN---ITYTWSDTHHRCLQLASSLLSIG--ISRGHVVSVVSPNV 74 (569)
Q Consensus 1 ~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~-~al~~~~---~~~Ty~el~~~v~~~A~~L~~~g--~~~gd~V~i~~~n~ 74 (569)
++++.....+..+.+....+.+.+..++++ ..+++.. +.+||+|+.+++.++|..|.+.| +++||+|++++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs 82 (537)
T KOG1176|consen 3 MEKLWKGPANNTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNT 82 (537)
T ss_pred ccccccCcccCccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCC
Confidence 355666667777888888888888777777 7777755 89999999999999999999875 89999999999999
Q ss_pred hHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccc
Q 044926 75 PALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSS 154 (569)
Q Consensus 75 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (569)
++++.+++||+..|++..++||.+.+.++.+.++.++++++|++....+.+.+...... ..++++.......
T Consensus 83 ~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~-----~~i~~l~~~~~~~--- 154 (537)
T KOG1176|consen 83 PEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA-----LKIIVLTGDEGVI--- 154 (537)
T ss_pred HHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC-----CceEEEecccCcc---
Confidence 99999999999999999999999999999999999999999999999998877765543 4555555431100
Q ss_pred cCCCCCCCCCcc-cchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCE
Q 044926 155 QSHHPNISDDQF-FSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPV 233 (569)
Q Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~ 233 (569)
....... ...+.++...+.+.. ..+...+|++.++|||||||.||||.+||++++.+.......+.++..|+
T Consensus 155 -----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v 227 (537)
T KOG1176|consen 155 -----SISDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDV 227 (537)
T ss_pred -----ccccccccccchhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCce
Confidence 0000000 111444444443333 45567799999999999999999999999999998887777788888999
Q ss_pred EEEecCchhhhhhhHHHHHHHhCceEEEe-ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEE
Q 044926 234 YLWTLPMFHSNGWCFPWAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLV 312 (569)
Q Consensus 234 ~~~~~pl~~~~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~ 312 (569)
.++.+|++|.+|+...+.+.+.|++.++. +.+++..+++.+++|++|++.++|.++..+++.+.....+++ +++.+.
T Consensus 228 ~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~--sl~~v~ 305 (537)
T KOG1176|consen 228 YLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLS--SLRSVL 305 (537)
T ss_pred EEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCC--ccEEEE
Confidence 99999999999999988866665555555 567999999999999999999999999999999866666776 999999
Q ss_pred EeCCCCcHHHHHHHH-hcC-CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcc
Q 044926 313 TAGAPPPAAVLLRTE-SLG-FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVS 390 (569)
Q Consensus 313 ~~g~~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~ 390 (569)
+||+++++++.++++ +++ ..+.++||+||+++.++.+.+.++ ....++|.+.++. ...+.+ ++|..
T Consensus 306 ~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e----------~k~~svG~~~~g~-~~~v~~-e~g~~ 373 (537)
T KOG1176|consen 306 SGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE----------RKPGSVGRLLPGV-RVKVLD-ETGVS 373 (537)
T ss_pred ecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc----------CcccccCccccce-EEEeeC-CCCCC
Confidence 999999999999998 666 899999999999988888764432 4567899999965 555555 59999
Q ss_pred cCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHH
Q 044926 391 AKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470 (569)
Q Consensus 391 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~ 470 (569)
++++ +.||||++|+.++.||+++|+.|+..|+++|||+|||+|++|+||+|++.+|++|+||.+|+.|+|.|||++|.
T Consensus 374 l~~~--~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~ 451 (537)
T KOG1176|consen 374 LGPN--QTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLL 451 (537)
T ss_pred CCCC--CceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHH
Confidence 9988 88999999999999999999999999997799999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 471 ~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
+||.|.||+|++.+++.+|+.++|+|+.+++.. ..+++|++++++++++|++|..++|+++||+|++|||+|+.|++.
T Consensus 452 ~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~--lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~ 529 (537)
T KOG1176|consen 452 THPDVLEAAVVGIPDEVWGETPAAFVVLKKGST--LTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDI 529 (537)
T ss_pred hCCCccEEEEEcccccccCCcceEEEEecCCCc--CCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999766 899999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q 044926 551 AENMGSS 557 (569)
Q Consensus 551 ~~~~~~~ 557 (569)
+.++...
T Consensus 530 ~~~~~~~ 536 (537)
T KOG1176|consen 530 AKKLGSK 536 (537)
T ss_pred HHhcccC
Confidence 9987653
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-79 Score=567.49 Aligned_cols=517 Identities=28% Similarity=0.401 Sum_probs=447.1
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFA 87 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 87 (569)
+-...|+.++++..+++.||+.|+++. +.++||+||...++++|.+|...|+++||+|++..||+.+|+..++||+++
T Consensus 46 pl~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~A 125 (596)
T KOG1177|consen 46 PLDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARA 125 (596)
T ss_pred CcccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHh
Confidence 346679999999999999999999874 357999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCCHHHHHHHHhhcCCeEEEEcccc-----HHHHHHHHhcCCCCCC----------CCCEEEEeCCCcccc
Q 044926 88 AAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS-----RALVREAVSLFPPDLK----------PPPLVLISDDDDAAV 152 (569)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 152 (569)
|.+.+++||++..++++..|++.+++++|+-+.+ .+.+.+...+...... +.+++..+++...
T Consensus 126 G~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~-- 203 (596)
T KOG1177|consen 126 GLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPL-- 203 (596)
T ss_pred ceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcC--
Confidence 9999999999999999999999999999997643 3444454444332221 2234444422110
Q ss_pred cccCCCCCCCCCcccchhhHhhhcCCCCcc----cC-CCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC
Q 044926 153 SSQSHHPNISDDQFFSTYESLVAKGDPEFE----WI-RPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS 227 (569)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~ 227 (569)
+ ....+++++........ .. .-..++|++-|.|||||||.|||+.+||.++++++......++
T Consensus 204 ------~------Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g 271 (596)
T KOG1177|consen 204 ------P------GAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG 271 (596)
T ss_pred ------C------CceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC
Confidence 0 13556666655443211 11 1245689999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCchhhhhhhH-HHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCc
Q 044926 228 VPTQPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKL 305 (569)
Q Consensus 228 ~~~~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~ 305 (569)
++..+++++..|++|.+|... .+.++..|++++++. .+++.+.++.|+++++|.++++|+++..+++.++....+++
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s- 350 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLS- 350 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchh-
Confidence 999999999999999999765 677788899988864 59999999999999999999999999999999888877777
Q ss_pred CCCceEEEeCCCCcHHHHHHHH-hcCCe-eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEe
Q 044926 306 AKPVHLVTAGAPPPAAVLLRTE-SLGFK-VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVL 383 (569)
Q Consensus 306 ~~l~~~~~~g~~l~~~~~~~~~-~~~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 383 (569)
++|..++||+++++++.+.+. ..+.. +...||+||+++..+....+ +.......++|...+.. +..|+
T Consensus 351 -~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~--------D~~~~~~ksVG~~m~h~-Ea~iv 420 (596)
T KOG1177|consen 351 -SLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLG--------DPPEERIKSVGHLMDHY-EAAIV 420 (596)
T ss_pred -hhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCC--------CCHHHHHhhhhhccccc-ccccc
Confidence 999999999999999999987 55543 77799999999887765433 33444556788877777 99999
Q ss_pred CCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHH
Q 044926 384 DPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSV 463 (569)
Q Consensus 384 d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~ 463 (569)
| +.|..++.+ ..||||++|.+.|.|||++++.+......|.||+|||+|.++++|.+++.||++|+|+.+|++|+|.
T Consensus 421 ~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ 497 (596)
T KOG1177|consen 421 D-KDGSEVPLG--TKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPT 497 (596)
T ss_pred c-CCCCccccC--CCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChH
Confidence 9 589999998 6799999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCccc
Q 044926 464 EVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543 (569)
Q Consensus 464 ~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~ 543 (569)
+||+.|.+||.|.++.|++++++..|+.++++|.+.++.+-....++|+.+|+.++.++++|+.|++++++|+|.+|||+
T Consensus 498 ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIq 577 (596)
T KOG1177|consen 498 ELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQ 577 (596)
T ss_pred HHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccch
Confidence 99999999999999999999999999999999999988764468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 044926 544 KFVLREIAENM 554 (569)
Q Consensus 544 r~~l~~~~~~~ 554 (569)
|.+++++++..
T Consensus 578 KFeir~~~k~~ 588 (596)
T KOG1177|consen 578 KFEIREMSKGH 588 (596)
T ss_pred hHHHHHHHHhh
Confidence 99999999854
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-77 Score=619.22 Aligned_cols=515 Identities=35% Similarity=0.513 Sum_probs=441.2
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeCCee--eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYNNIT--YTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~--~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
......++++.++|.+++..+|+++|+++.++. +||+||.++++++|..|.+.|+++||+|+|+++|++++++++|||
T Consensus 4 ~~~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~ 83 (534)
T COG0318 4 LMRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAA 83 (534)
T ss_pred cccccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 345567899999999999999999999998877 999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+++|++++|++|.+..+++.++++.++++.++++.+..+........... ...+..........
T Consensus 84 ~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------- 147 (534)
T COG0318 84 LRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPV---VLVVLLVGDADDRL------------- 147 (534)
T ss_pred HhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCc---ceEEEecccccccc-------------
Confidence 99999999999999999999999999999999998855555554433210 11122211111100
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC--CCCCCEEEEecCchh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS--VPTQPVYLWTLPMFH 242 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~--~~~~d~~~~~~pl~~ 242 (569)
...+++...............+++|+++++|||||||.||||++||++++.+.......++ ++..|++++.+|++|
T Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 225 (534)
T COG0318 148 --PITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFH 225 (534)
T ss_pred --cccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHH
Confidence 0234555333322222222367889999999999999999999999999999888888888 899999999999999
Q ss_pred hhhhhHHHHH-HHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCc
Q 044926 243 SNGWCFPWAM-AAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPP 319 (569)
Q Consensus 243 ~~g~~~~~~~-~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~ 319 (569)
.+|+...+.+ ++.|++.++.+ .+++..++..+.++++|++.++|+++..+++.......+... ++|.+++||++++
T Consensus 226 ~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~-~lr~~~~gg~~~~ 304 (534)
T COG0318 226 IFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSS-SLRLVLSGGAPLP 304 (534)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcccccc-ceEEEEecCCcCC
Confidence 9999987666 67777777776 599999999999999999999999999999988776665552 3999999999999
Q ss_pred HHHHHHHH-hcC-CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCc
Q 044926 320 AAVLLRTE-SLG-FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST 397 (569)
Q Consensus 320 ~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~ 397 (569)
++++++++ +++ ..+++.||+||+++.++...... . ......+|.|.+++ +++|+|++++...+ | +
T Consensus 305 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~--------~~~~~~~G~~~pg~-~v~Ivd~~~~~~~p-g--~ 371 (534)
T COG0318 305 PELLERFEERFGPIAILEGYGLTETSPVVTINPPDD-L--------LAKPGSVGRPLPGV-EVRIVDPDGGEVLP-G--E 371 (534)
T ss_pred HHHHHHHHHHhCCCceEEeecccccCceeecCCCch-h--------hhcCCcccccCCCc-EEEEEeCCCCccCC-C--C
Confidence 99999998 666 57999999999987777654322 0 23345568999998 99999997775555 5 7
Q ss_pred eeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcce
Q 044926 398 LGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477 (569)
Q Consensus 398 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~ 477 (569)
+|||+++||+++.|||++|+.+...|.++|||+|||+|++|+||++++.||.+|+|+.+|++|+|.+||+++.+||.|.+
T Consensus 372 vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~ 451 (534)
T COG0318 372 VGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAE 451 (534)
T ss_pred ceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcce
Confidence 99999999999999999999999888856999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 478 AAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 478 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
++|++.+++.+|+.++++|+..++.....+.++|.++++++++.+++|+.++++++||+|++||++|+.|++.+..
T Consensus 452 aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 452 AAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred EEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 9999999999999999999998763222588999999999999999999999999999999999999999999887
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=582.64 Aligned_cols=495 Identities=27% Similarity=0.357 Sum_probs=416.5
Q ss_pred HHHHHHHHH-cCCCCeEEeCC-----eeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 18 VFLERAATV-YGDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 18 ~~l~~~a~~-~p~~~al~~~~-----~~~Ty~el~~~v~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
+.++++... .+|+.|+++.+ +.+||+||.+.++++|+.|++ .|+ +||+|++++|+.++.++++|||+++|++
T Consensus 13 n~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI 91 (528)
T COG0365 13 NALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAI 91 (528)
T ss_pred hhhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 356777663 46899999864 679999999999999999997 578 9999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
.+|+.+.++++.+...+++++++++|+.+.....................+++..... ..|
T Consensus 92 ~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~-------------------~~~ 152 (528)
T COG0365 92 PAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG-------------------LWY 152 (528)
T ss_pred EeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc-------------------ccH
Confidence 9999999999999999999999999998765443221110000000011123222221 456
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhh-ccCCCCCCCEEEEecCchhhhhhhH-
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL-SDWSVPTQPVYLWTLPMFHSNGWCF- 248 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~-~~~~~~~~d~~~~~~pl~~~~g~~~- 248 (569)
.+..+......+... .+.+|+++++|||||||+||||+++|..++....... ..+.+.++|++++..++.|++|..+
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~ 231 (528)
T COG0365 153 DEAVEKASEKFEFEP-LPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYS 231 (528)
T ss_pred HHHhhccCCCCCccc-cCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHH
Confidence 666555444443332 7788999999999999999999999998776665544 4677889999999999999999988
Q ss_pred HHHHHHhCceEEEecc--C-CHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 249 PWAMAAVGGTNICIRK--F-DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 249 ~~~~~~~g~~~~~~~~--~-~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
.+++++.|++.++.+. + ++..+++.++++++|.+++.|+.+++|++.....+.+++ +||.+.+.||+++++.+++
T Consensus 232 v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dls--sLr~~~SaGEPLnpe~~~w 309 (528)
T COG0365 232 VFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLS--SLRVLGSAGEPLNPEAFEW 309 (528)
T ss_pred HHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccch--hheeeeccCCCCCHHHHHH
Confidence 7888999999988853 3 499999999999999999999999999998763444455 9999999999999999999
Q ss_pred HH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEe
Q 044926 326 TE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404 (569)
Q Consensus 326 ~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 404 (569)
+. .+|++|.+.||+||++++...... ...+.+.|.|.||. ++.|+|++ |++++.+ + |+|+++
T Consensus 310 ~~~~~g~~i~d~~gqTEtg~~~~~~~~------------~~~~g~~g~p~pG~-~~~vvdd~-g~~~~~~--~-G~Lvi~ 372 (528)
T COG0365 310 FYSALGVWILDIYGQTETGMGFIAGRP------------PVKNGSSGLPLPGY-AVRRVDDE-GNPVPPG--V-GELVVR 372 (528)
T ss_pred HHHHhCCCEeccccccccCccccCCCC------------CcCCCCCCCCCCCc-eeEEECCC-CCcCCCC--c-eEEEEe
Confidence 98 569999999999999955554321 22344559999999 99999997 9999988 7 999999
Q ss_pred cC--cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 405 GG--CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 405 ~~--~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
.+ .++++||++++.+.+.+-+. ||.|||.+++|+||++|+.||.||+||++|+++.+.|||++|.+||.|.||+|++
T Consensus 373 ~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg 451 (528)
T COG0365 373 LPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVG 451 (528)
T ss_pred CCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEe
Confidence 87 89999999999988888734 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
.+++..|+.+++||+++++.......++|++++++.+.++..|+.|.++++||+|.||||.|+.||+.+.+
T Consensus 452 ~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 452 VPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred ccCCCCCcEEEEEEEecCCCChHHHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence 99999999999999999986533456778888888888899999999999999999999999999999985
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-74 Score=523.30 Aligned_cols=507 Identities=26% Similarity=0.379 Sum_probs=448.7
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
=|...|+.++|.++|.++||++|+++.++.+||+||+++++++|.+|++.|+++||+|.+..+|..+|++++||++++|+
T Consensus 24 yW~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv 103 (542)
T COG1021 24 YWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV 103 (542)
T ss_pred cccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEcccc-----HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHS-----RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
.+|.--|+....++.+....++++.+|++... .+...+....... ++.+++.++.+..
T Consensus 104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~t---lr~v~v~ge~~~~-------------- 166 (542)
T COG1021 104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPT---LRHVIVAGEAEHP-------------- 166 (542)
T ss_pred chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCc---ceEEEEccCCCCc--------------
Confidence 99999999999999999999999999998643 3344444443332 4566666443321
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~ 244 (569)
......+........+..+.+++++++...+.||||.||.+..||.....+...-.+..+++..+++++.+|..|.+
T Consensus 167 ---~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNf 243 (542)
T COG1021 167 ---SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNF 243 (542)
T ss_pred ---chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCC
Confidence 12222333333333444557788999999999999999999999999988888888888999999999999999999
Q ss_pred hhhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHH
Q 044926 245 GWCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 245 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
-+.. .++.++.||++|+.++.+++..+.+|+++++|+...+|.....|++..+....+++ |||.+-.||..+++..
T Consensus 244 plssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~Ls--SLrllQVGGarl~~~~ 321 (542)
T COG1021 244 PLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLS--SLRLLQVGGARLSATL 321 (542)
T ss_pred CCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCch--heeEEeecCcccCHHH
Confidence 8876 78889999999999999999999999999999999999999999999988888887 9999999999999999
Q ss_pred HHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 323 LLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 323 ~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
.+++. .+||.+.+.+||.|.-...+ .. ++..+......|.|+.+..+++|+|. +|+++++| |+|+|
T Consensus 322 Arrv~~~lgC~LQQVFGMAEGLvnyT--RL--------DDp~E~i~~TQGrPlsP~DEvrvvD~-dg~pv~pG--E~G~L 388 (542)
T COG1021 322 ARRVPAVLGCQLQQVFGMAEGLVNYT--RL--------DDPPEIIIHTQGRPLSPDDEVRVVDA-DGNPVAPG--EVGEL 388 (542)
T ss_pred HhhchhhhCchHHHHhhhhhhhhccc--cc--------CCchHheeecCCCcCCCcceeEEecC-CCCCCCCC--Cccee
Confidence 99998 67999999999999532222 21 13345566789999999999999997 89999998 99999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
.++||...+||++.|+.+...|+.+|+|+|||++++++||++.+.||.+|+|+.+|++|-.+|||+.|..||.|.++++|
T Consensus 389 ltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlV 468 (542)
T COG1021 389 LTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALV 468 (542)
T ss_pred eecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
..+++..|++.++||+.++.. ....++++++++. +..|++|+.|.+++++|.|+-|||++++|++.+...
T Consensus 469 ampDelLGEksCAfiv~~~~~---~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 469 AMPDELLGEKSCAFIVVKEPP---LRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR 539 (542)
T ss_pred cCchhhcCcceeEEEEecCCC---CCHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence 999999999999999998654 5778999999775 789999999999999999999999999999987654
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-72 Score=590.63 Aligned_cols=527 Identities=25% Similarity=0.327 Sum_probs=423.2
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFA 87 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 87 (569)
+++..+.|+.++|++++..+|+++|+++.++.+||+||.++++++|.+|.+.|+++||+|+|+++|+++++++++||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~ 80 (563)
T PLN02860 1 MANHSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACA 80 (563)
T ss_pred CcchhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence 45678999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHh-cCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcc
Q 044926 88 AAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVS-LFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQF 166 (569)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (569)
|++++|+++.++.+++.++++++++++++++.+.......... ... ....++...+..... . .....
T Consensus 81 Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--------~-~~~~~ 148 (563)
T PLN02860 81 GGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLP---SLMWQVFLESPSSSV--------F-IFLNS 148 (563)
T ss_pred cEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCC---ceeEEEEecCccccc--------c-cchhh
Confidence 9999999999999999999999999999998765333322211 111 012233332211000 0 00000
Q ss_pred cchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhh
Q 044926 167 FSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW 246 (569)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~ 246 (569)
....+++...............++++++++|||||||.||+|.++|+++..++......+++.++|+++...|++|..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 228 (563)
T PLN02860 149 FLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL 228 (563)
T ss_pred ccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccH
Confidence 01111111110000111112456899999999999999999999999998877776677889999999999999999999
Q ss_pred hHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHH
Q 044926 247 CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT 326 (569)
Q Consensus 247 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~ 326 (569)
...+.+++.|+++++.+++++..+++.|+++++|++.++|+++..|.+..........+.++|.+++||+++++.+.+.+
T Consensus 229 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~ 308 (563)
T PLN02860 229 SSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDA 308 (563)
T ss_pred HHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHH
Confidence 88888899999999998999999999999999999999999999998765332222233499999999999999999998
Q ss_pred Hh-c-CCeeeecccccccccceeecccccc-cccCc-----------HHHHhhhhcccCcccccceeeEEeCCCCCcccC
Q 044926 327 ES-L-GFKVSHGYGLTETGGIVVSCAWKRN-WNLLP-----------AAEKAKLKARQGVKTTALTEVDVLDPKSGVSAK 392 (569)
Q Consensus 327 ~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~ 392 (569)
++ + ++++++.||+||+++.+........ ..... .........++|.|.+++ +++|++++
T Consensus 309 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~~~~------ 381 (563)
T PLN02860 309 KKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV-ELKIGLDE------ 381 (563)
T ss_pred HHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc-EEEEecCC------
Confidence 84 4 7899999999999765543221110 00000 000011123679999998 99999875
Q ss_pred CCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 393 RDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 393 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
.+ +.|||+++|+.++.||+++++.+...+..+|||+|||+|++++||++++.||.+|+||.+|++|+|.+||++|.++
T Consensus 382 ~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 459 (563)
T PLN02860 382 SS--RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQH 459 (563)
T ss_pred CC--ceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhC
Confidence 23 7899999999999999999999988888799999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCCCCCceeEEEEEecCCCC------------CCCCHHHHHHHHhc-cCCCCccccEEEEe-cccCCCC
Q 044926 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSK------------SKPTEKEMIEYCRG-RLPHYMVPKTVVFM-DELPKTS 538 (569)
Q Consensus 473 ~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~~l~~~l~~-~l~~~~~p~~~~~~-~~iP~t~ 538 (569)
|+|.+++|++.+++..++.++++|++.++.. .....+++++++++ +|+.|++|..++++ ++||+|+
T Consensus 460 p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~ 539 (563)
T PLN02860 460 PGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTT 539 (563)
T ss_pred CCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCc
Confidence 9999999999999888899999999876521 12456789999987 59999999988765 6799999
Q ss_pred CCcccHHHHHHHHHhcC
Q 044926 539 TGKIQKFVLREIAENMG 555 (569)
Q Consensus 539 ~GKi~r~~l~~~~~~~~ 555 (569)
+||++|++|++++.+..
T Consensus 540 ~GKi~r~~L~~~~~~~~ 556 (563)
T PLN02860 540 TGKIRRDEVRREVLSHL 556 (563)
T ss_pred ccchhHHHHHHHHHHHH
Confidence 99999999999886654
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=588.40 Aligned_cols=499 Identities=26% Similarity=0.348 Sum_probs=422.6
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
-|+.++|+++++.+||++|+++.++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL 128 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++.++.+++.+++++++++++|++.+....+........ ....+........ ........++++
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 193 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLG----RLRAWGGNPDDDE-----------PSGSTDETLDDL 193 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccc----cceEEEEecCccc-----------cCCcCcccHHHH
Confidence 9999999999999999999999999877665544322111 1111211111100 000113456666
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~ 253 (569)
+....... .+...+++++++|||||||.||+|.++|+++..........+++..+|++++..|++|.+|+...+.++
T Consensus 194 ~~~~~~~~---~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l 270 (549)
T PRK07788 194 IAGSSTAP---LPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAM 270 (549)
T ss_pred hcCCCCCC---CCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHH
Confidence 55433221 123456889999999999999999999999998878777788889999999999999999998777888
Q ss_pred HhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCe
Q 044926 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFK 332 (569)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~ 332 (569)
..|+++++...+++..+++.++++++|++.++|+++..+++..........+.++|.+++||+++++++.+++. .++..
T Consensus 271 ~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 350 (549)
T PRK07788 271 ALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPV 350 (549)
T ss_pred HhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCcc
Confidence 89999988888999999999999999999999999999998765422222234999999999999999999988 57889
Q ss_pred eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccc
Q 044926 333 VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGY 412 (569)
Q Consensus 333 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 412 (569)
+++.||+||++..+..+. ........++|.|.++. +++|+|+ ++.+++.| +.|||+++|+.++.||
T Consensus 351 l~~~YG~TE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~~gY 416 (549)
T PRK07788 351 LYNLYGSTEVAFATIATP----------EDLAEAPGTVGRPPKGV-TVKILDE-NGNEVPRG--VVGRIFVGNGFPFEGY 416 (549)
T ss_pred ceeccCcchhchhhccCh----------hhhhhcCCCcccCCCCc-EEEEECC-CcCCCCCC--CeEEEEEeCCCccccc
Confidence 999999999876544321 11122345789999998 9999997 67778776 8999999999999999
Q ss_pred cCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCcee
Q 044926 413 LKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492 (569)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~ 492 (569)
++++.. ... +|||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.+
T Consensus 417 ~~~~~~---~~~-~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~ 492 (549)
T PRK07788 417 TDGRDK---QII-DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRL 492 (549)
T ss_pred cCCCcc---ccc-CCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEE
Confidence 988765 222 7899999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 493 CAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 493 ~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
+++|+..++.. .+.++++++++++|+.+++|..++++++||+|++||++|++|+++
T Consensus 493 ~a~vv~~~~~~--~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 493 RAFVVKAPGAA--LDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EEEEEeCCCCC--CCHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 99999887654 678999999999999999999999999999999999999999763
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-71 Score=585.30 Aligned_cols=535 Identities=50% Similarity=0.899 Sum_probs=428.6
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFA 87 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 87 (569)
.+..+|.|+.++|.++++.+|+++|+.+.+.++||+||.++++++|..|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~ 87 (579)
T PLN03102 8 EANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA 87 (579)
T ss_pred ccccccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCC--CCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 88 AAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDL--KPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
|++++|++|.++.+++.++++.++++++|++++..+.+.+......... ....++.++...... .. ..
T Consensus 88 G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~ 157 (579)
T PLN03102 88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-------RP---SS 157 (579)
T ss_pred CcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-------CC---cc
Confidence 9999999999999999999999999999999887766655543322110 012344443221100 00 00
Q ss_pred ccchhhHhhhcCCCCcc----cCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCch
Q 044926 166 FFSTYESLVAKGDPEFE----WIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
....+.+++........ ......++++++|+|||||||.||+|.++|+++..........+.+...+++++.+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 237 (579)
T PLN03102 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMF 237 (579)
T ss_pred cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChh
Confidence 01234444433322111 01123567999999999999999999999999765554444445667778999999999
Q ss_pred hhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHH
Q 044926 242 HSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAA 321 (569)
Q Consensus 242 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~ 321 (569)
|..++...+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......... +++.+++||+++++.
T Consensus 238 h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~~~~~~~gg~~~~~~ 315 (579)
T PLN03102 238 HCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRS--GPVHVLTGGSPPPAA 315 (579)
T ss_pred hhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcc--cceEEEECCCCCCHH
Confidence 999988877888899999998888999999999999999999999999999987543332333 678899999999999
Q ss_pred HHHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 322 VLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 322 ~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
+.++++++++++++.||+||+++.+..+.....|...+...........|.+..+...+.+.|.+.+..++.++++.|||
T Consensus 316 ~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl 395 (579)
T PLN03102 316 LVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEI 395 (579)
T ss_pred HHHHHHHcCCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEE
Confidence 99998888999999999999987665443322222221111111112234444444467788877777776544468999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++|+.++.||+++++.+...|. +|||+|||+|++++||++++.||.+|+|+.+|++|+|.+||.+|.++|.|.+++|+
T Consensus 396 ~v~g~~~~~GY~~~~~~t~~~f~-~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv 474 (579)
T PLN03102 396 VIKGSSIMKGYLKNPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVV 474 (579)
T ss_pred EEECcchhhhhcCChhhhHhhhc-cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEE
Confidence 99999999999999999988887 89999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCC--------CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSK--------PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
+.+++..++.++++|+..++.... ....+++++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 475 ~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~ 554 (579)
T PLN03102 475 AMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG 554 (579)
T ss_pred eccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence 999998888999999887653310 135789999999999999999999999999999999999999999877
Q ss_pred cC
Q 044926 554 MG 555 (569)
Q Consensus 554 ~~ 555 (569)
+.
T Consensus 555 ~~ 556 (579)
T PLN03102 555 LV 556 (579)
T ss_pred hh
Confidence 54
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-71 Score=589.92 Aligned_cols=523 Identities=19% Similarity=0.243 Sum_probs=409.1
Q ss_pred chHHHHHHHHHH--cCCCCeEEeC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 15 TPLVFLERAATV--YGDSPSIIYN------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 15 tl~~~l~~~a~~--~p~~~al~~~------~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
+..++|++++.. +|+++|+++. .+++||+||.++++++|..|++.|+++||+|+++++|++++++++|||++
T Consensus 60 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~ 139 (647)
T PTZ00237 60 TCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCAR 139 (647)
T ss_pred HHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 346788888764 7999999873 36899999999999999999999999999999999999999999999999
Q ss_pred ccceEeeccCCCCHHHHHHHHhhcCCeEEEEccc---------cHHHHHHHHhcCCCCCCCCCEEEEeCCCcc-cccccC
Q 044926 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH---------SRALVREAVSLFPPDLKPPPLVLISDDDDA-AVSSQS 156 (569)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 156 (569)
+|++++|+++.++.+++.+++++++++++|+++. ..+.+.++...... ....++++...... ......
T Consensus 140 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~~~~~~~~~~ 217 (647)
T PTZ00237 140 IGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTF--KPSNVITLFRNDITSESDLKK 217 (647)
T ss_pred hCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccC--CCCEEEEEEcCCccccccccc
Confidence 9999999999999999999999999999999752 22333333321111 12344444221100 000000
Q ss_pred CCCCCCCCcccchhhHhhhcCC----CCcccCCCCCCCCceEEEecCCCCCCCceEEEchHH-HHHHHhhhhccCCCCCC
Q 044926 157 HHPNISDDQFFSTYESLVAKGD----PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRG-IFIVAVNTLSDWSVPTQ 231 (569)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~-l~~~~~~~~~~~~~~~~ 231 (569)
. ...........|++++.... ..........++|+++|+|||||||.||||+++|.+ +..........+....+
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~ 296 (647)
T PTZ00237 218 I-ETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIP 296 (647)
T ss_pred c-cccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCC
Confidence 0 00000001234555544211 111112235678999999999999999999999998 44433333444567788
Q ss_pred CEEEEecCchhhhhhhHHHHHHHhCceEEEecc--CC----HHHHHHHHHHhCcceeechhHHHHHHHcCCCCC---CCC
Q 044926 232 PVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK--FD----ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD---KKP 302 (569)
Q Consensus 232 d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~--~~----~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~---~~~ 302 (569)
|++++..|+.|+.+....+.+++.|+++++.+. +. +..+++.++++++|++.++|+++..|++..... ...
T Consensus 297 d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 376 (647)
T PTZ00237 297 TVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSK 376 (647)
T ss_pred cEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccc
Confidence 999999999998776677888999999988753 22 688999999999999999999999998753221 122
Q ss_pred CCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeE
Q 044926 303 LKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVD 381 (569)
Q Consensus 303 ~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 381 (569)
..++++|.++++|+++++++.++++ .+++++++.||+||+++.+..... .......++|.|.++. +++
T Consensus 377 ~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~----------~~~~~~~s~G~p~~g~-~~~ 445 (647)
T PTZ00237 377 YDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYG----------HINIPYNATGVPSIFI-KPS 445 (647)
T ss_pred cCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCC----------CCCCCCCCCccCcCCc-eEE
Confidence 2344999999999999999999988 579999999999999865443211 0111235789999998 999
Q ss_pred EeCCCCCcccCCCCCceeEEEEecC---cccccccCCccccccccCC-CCeeeecceEEEecCCcEEEeccCCCeEEeCc
Q 044926 382 VLDPKSGVSAKRDGSTLGEIVLRGG---CIMLGYLKDPIGTRKCMTD-DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGG 457 (569)
Q Consensus 382 i~d~~~~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~-~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G 457 (569)
|+|+ +|.+++.| +.|||++++| +++.|||++++.+...|.. +|||+|||+|++++||++++.||+||+||++|
T Consensus 446 i~d~-~g~~~~~g--e~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G 522 (647)
T PTZ00237 446 ILSE-DGKELNVN--EIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISG 522 (647)
T ss_pred EECC-CCCCCCCC--CceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECC
Confidence 9997 78888877 8999999986 7899999999888776653 68999999999999999999999999999999
Q ss_pred eeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCC-CCCC----HHHHHHHHhccCCCCccccEEEEec
Q 044926 458 ENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-SKPT----EKEMIEYCRGRLPHYMVPKTVVFMD 532 (569)
Q Consensus 458 ~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~----~~~l~~~l~~~l~~~~~p~~~~~~~ 532 (569)
++|+|.+||++|.+||.|.+++|++.+++..|+.++++|++.++.. ...+ .++|+++++++|+++++|+.|++++
T Consensus 523 ~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~ 602 (647)
T PTZ00237 523 NKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVN 602 (647)
T ss_pred EEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcC
Confidence 9999999999999999999999999999988999999999875421 1123 2567888899999999999999999
Q ss_pred ccCCCCCCcccHHHHHHHHHhc
Q 044926 533 ELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 533 ~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+||+|++||++|+.|++++.+.
T Consensus 603 ~lP~T~sGKi~R~~Lr~~~~~~ 624 (647)
T PTZ00237 603 QLPKTKTGKIPRQIISKFLNDS 624 (647)
T ss_pred CCCCCCCccEeHHHHHHHHcCC
Confidence 9999999999999999997543
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-70 Score=584.33 Aligned_cols=522 Identities=22% Similarity=0.278 Sum_probs=412.2
Q ss_pred Cch-HHHHHHHHH-HcCCCCeEEeC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q 044926 14 LTP-LVFLERAAT-VYGDSPSIIYN------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVP 85 (569)
Q Consensus 14 ~tl-~~~l~~~a~-~~p~~~al~~~------~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~ 85 (569)
+++ .++|++++. .+|+++|+++. .+.+||+||.++++++|..|++.|+++||+|+++++|++++++++|||+
T Consensus 87 ~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~ 166 (666)
T PLN02654 87 TNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACA 166 (666)
T ss_pred eeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 444 678887776 48999999874 2689999999999999999999999999999999999999999999999
Q ss_pred hccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHH---------HHHHHHhcCCC-CCCCCCEEEEeCCCccccccc
Q 044926 86 FAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA---------LVREAVSLFPP-DLKPPPLVLISDDDDAAVSSQ 155 (569)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 155 (569)
++|++++|+++.++.+++.+++++++++++|+++.... .+......... ......++....... ..
T Consensus 167 ~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 242 (666)
T PLN02654 167 RIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA--MK-- 242 (666)
T ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccc--cc--
Confidence 99999999999999999999999999999999876421 22222221110 000111222111100 00
Q ss_pred CCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHH-HhhhhccCCCCCCCEE
Q 044926 156 SHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIV-AVNTLSDWSVPTQPVY 234 (569)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~-~~~~~~~~~~~~~d~~ 234 (569)
......... ....++++....... ........+|+++|+|||||||.||||+++|.+++.. .......++++++|++
T Consensus 243 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~ 320 (666)
T PLN02654 243 REDTKWQEG-RDVWWQDVVPNYPTK-CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVY 320 (666)
T ss_pred ccccccccC-CcccHHHHhhcCCCC-CCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEE
Confidence 000000000 012244444322111 1112246789999999999999999999999997643 3445566789999999
Q ss_pred EEecCchhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCc
Q 044926 235 LWTLPMFHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV 309 (569)
Q Consensus 235 ~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~ 309 (569)
++..|+.|..+..+ .+.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|.+..........++++|
T Consensus 321 ~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr 400 (666)
T PLN02654 321 WCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLR 400 (666)
T ss_pred EEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhhee
Confidence 99999999998765 5677899999998853 579999999999999999999999999998754323333345999
Q ss_pred eEEEeCCCCcHHHHHHHH-hcC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCC
Q 044926 310 HLVTAGAPPPAAVLLRTE-SLG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDP 385 (569)
Q Consensus 310 ~~~~~g~~l~~~~~~~~~-~~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~ 385 (569)
.++++|+++++++.+++. .+| +++.+.||+||+++........ .......++|.|.+++ +++|+|+
T Consensus 401 ~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~i~d~ 470 (666)
T PLN02654 401 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---------AWPQKPGSATFPFFGV-QPVIVDE 470 (666)
T ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCC---------CCCCCCCccCCCCCCc-eEEEECC
Confidence 999999999999999887 556 7899999999998766532210 0112345789999999 9999997
Q ss_pred CCCcccCCCCCceeEEEEec--CcccccccCCccccccccC--CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeee
Q 044926 386 KSGVSAKRDGSTLGEIVLRG--GCIMLGYLKDPIGTRKCMT--DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLS 461 (569)
Q Consensus 386 ~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~ 461 (569)
+|..++.+ +.|||++++ |+++.|||++++.+...+- .+|||+|||+|++|+||+++++||.||+||++|++|+
T Consensus 471 -~g~~~~~~--~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~ 547 (666)
T PLN02654 471 -KGKEIEGE--CSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIG 547 (666)
T ss_pred -CCCCCCCC--CceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEEC
Confidence 67777655 789999999 7899999999987765542 2789999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC-CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCC
Q 044926 462 SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540 (569)
Q Consensus 462 ~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~G 540 (569)
|.+||.+|.+||+|.+++|++.+++..|+.++++|++.++... +...++|+++++++|+.+++|+.++++++||+|.+|
T Consensus 548 p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sG 627 (666)
T PLN02654 548 TAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSG 627 (666)
T ss_pred HHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCc
Confidence 9999999999999999999999999889999999999877541 112357889999999999999999999999999999
Q ss_pred cccHHHHHHHHHhc
Q 044926 541 KIQKFVLREIAENM 554 (569)
Q Consensus 541 Ki~r~~l~~~~~~~ 554 (569)
|++|+.|++.+.+.
T Consensus 628 Ki~r~~l~~~~~~~ 641 (666)
T PLN02654 628 KIMRRILRKIASRQ 641 (666)
T ss_pred CchHHHHHHHHcCC
Confidence 99999999998763
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-70 Score=582.04 Aligned_cols=517 Identities=22% Similarity=0.282 Sum_probs=414.1
Q ss_pred HHHHHHHHHHcCCCCeEEe------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 17 LVFLERAATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 17 ~~~l~~~a~~~p~~~al~~------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.++|++++..+|+++|+++ ..+.+||+||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|++
T Consensus 55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav 134 (628)
T TIGR02316 55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI 134 (628)
T ss_pred HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 5788888888999999987 2368999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCC
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
++|+++.++.+++.+++++++++++|+++.. ...+.++...... ....+++++...... ..
T Consensus 135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~~~~--------~~ 204 (628)
T TIGR02316 135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQH--PPPHVLLVDRGLAPM--------RL 204 (628)
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCC--CCCEEEEEeCCCCCc--------Cc
Confidence 9999999999999999999999999997642 2223333322211 134555554321100 00
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHH-HhhhhccCCCCCCCEEEEecCc
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIV-AVNTLSDWSVPTQPVYLWTLPM 240 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~-~~~~~~~~~~~~~d~~~~~~pl 240 (569)
... ....+.++...............++++++|+|||||||.||||.++|.+++.. .......++++++|++++..|+
T Consensus 205 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 283 (628)
T TIGR02316 205 IPG-RDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDV 283 (628)
T ss_pred ccC-ccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 000 01345554443221111112245789999999999999999999999997543 3445556788999999999999
Q ss_pred hhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeC
Q 044926 241 FHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG 315 (569)
Q Consensus 241 ~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g 315 (569)
.|..++.+ .+.+++.|+++++.+. .++..+++.|+++++|+++++|+++..|.+..........++++|.+++||
T Consensus 284 ~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG 363 (628)
T TIGR02316 284 GWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAG 363 (628)
T ss_pred CeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEec
Confidence 99998754 6778889999988753 578999999999999999999999999987643322222334999999999
Q ss_pred CCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCC
Q 044926 316 APPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRD 394 (569)
Q Consensus 316 ~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~ 394 (569)
+++++.+.++++ .++..+++.||+||++..+....... . .......++|.|.+++ +++|+|+++|++++.+
T Consensus 364 e~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~--~-----~~~~~~gs~G~p~~g~-~v~i~d~~~g~~~~~g 435 (628)
T TIGR02316 364 EPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGL--D-----LKPVKLGSPGLPMYGY-HLRVLDEATGRPCGPN 435 (628)
T ss_pred CCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCC--C-----cCCCCCCCcccCcCCc-eEEEEECCCCCCCCCC
Confidence 999999999887 56899999999999985544322110 0 0012235779999999 9999998888888877
Q ss_pred CCceeEEEEecC---cccccccCCcccccccc---CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHH
Q 044926 395 GSTLGEIVLRGG---CIMLGYLKDPIGTRKCM---TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESV 468 (569)
Q Consensus 395 ~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~ 468 (569)
+.|||+++|| ..+.||+++++.+...+ ..++||+|||+|++++||+++++||.||+||++|++|+|.+||.+
T Consensus 436 --~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~ 513 (628)
T TIGR02316 436 --EKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEES 513 (628)
T ss_pred --CcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHH
Confidence 8899999998 46789999887665443 136799999999999999999999999999999999999999999
Q ss_pred HHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC------CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcc
Q 044926 469 LYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS------KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542 (569)
Q Consensus 469 l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi 542 (569)
|.+||+|.+++|++.+++..|+.++++|++.++... ....++|+++++++|+.+++|+.++++++||+|++||+
T Consensus 514 l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi 593 (628)
T TIGR02316 514 VSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKL 593 (628)
T ss_pred HHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHH
Confidence 999999999999999999889999999998765321 02357899999999999999999999999999999999
Q ss_pred cHHHHHHHHHhc
Q 044926 543 QKFVLREIAENM 554 (569)
Q Consensus 543 ~r~~l~~~~~~~ 554 (569)
+|+.|++.+...
T Consensus 594 ~r~~L~~~~~~~ 605 (628)
T TIGR02316 594 LRRSIQALAEGR 605 (628)
T ss_pred HHHHHHHHHcCC
Confidence 999999987644
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=576.76 Aligned_cols=519 Identities=27% Similarity=0.374 Sum_probs=418.6
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEe--------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIY--------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~--------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 82 (569)
..|.|+.++|.++++.+|+++|+++ ..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4678999999999999999999986 34789999999999999999999999999999999999999999999
Q ss_pred HhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEcccc-----HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCC
Q 044926 83 AVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS-----RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSH 157 (569)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (569)
||+++| +++|+++.++.+++.+++++++++++|++... .+........... .+.++.++............
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~ 177 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPE---LRTVVEVDLARYLPGPKRLA 177 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCc---ceeEEEecCccccccccccc
Confidence 999999 56999999999999999999999999997643 2333333332221 34455444321100000000
Q ss_pred CCCC-C-CCcccchhhHhhhcCCCCc-ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEE
Q 044926 158 HPNI-S-DDQFFSTYESLVAKGDPEF-EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY 234 (569)
Q Consensus 158 ~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~ 234 (569)
.+.. . .......+.+.+....... .......++++++++|||||||.||+|.++|+++..++......+++.++|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~ 257 (632)
T PRK07529 178 VPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTV 257 (632)
T ss_pred ccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEE
Confidence 0000 0 1111344555554432221 11122467899999999999999999999999999888777777888999999
Q ss_pred EEecCchhhhhhhH-HHHHHHhCceEEEeccC---C---HHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCC
Q 044926 235 LWTLPMFHSNGWCF-PWAMAAVGGTNICIRKF---D---ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAK 307 (569)
Q Consensus 235 ~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~---~---~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 307 (569)
++..|++|.+++.. .+.++..|+++++.++. + ...+++.++++++|++.++|+++..|++.... ..+++ +
T Consensus 258 l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~--s 334 (632)
T PRK07529 258 FCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-GHDIS--S 334 (632)
T ss_pred EEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-CCCcc--c
Confidence 99999999988865 56778889988887531 1 36789999999999999999999999986532 22344 9
Q ss_pred CceEEEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEe--C
Q 044926 308 PVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVL--D 384 (569)
Q Consensus 308 l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~--d 384 (569)
+|.+++||+++++++.++++ .+++++++.||+||++..+..+... ......++|.|.++. .++|+ |
T Consensus 335 lr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~----------~~~~~~svG~~~p~~-~v~i~~~d 403 (632)
T PRK07529 335 LRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPD----------GERRIGSVGLRLPYQ-RVRVVILD 403 (632)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCcc----------ccccCCCcccccCCc-eEEEEEcC
Confidence 99999999999999999998 5799999999999998665443211 112345789999988 88875 5
Q ss_pred CCCC---cccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeee
Q 044926 385 PKSG---VSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLS 461 (569)
Q Consensus 385 ~~~~---~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~ 461 (569)
+ +| ..++.| +.|||+++||+++.||++++. +...+..++||+|||+|++++||++++.||.+|+||.+|++|+
T Consensus 404 ~-~g~~~~~~~~g--~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~ 479 (632)
T PRK07529 404 D-AGRYLRDCAVD--EVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNID 479 (632)
T ss_pred C-CCcccccCCCC--CceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEEC
Confidence 4 34 566766 899999999999999998754 4455555899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCC-CCccccEEEEecccCCCCCC
Q 044926 462 SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLP-HYMVPKTVVFMDELPKTSTG 540 (569)
Q Consensus 462 ~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~~~~~~iP~t~~G 540 (569)
|.+||+.|.+||+|.+++|++.+++..|+.++++|++.++.. .+.++++++++++++ .+++|..++++++||+|++|
T Consensus 480 p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~--~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~G 557 (632)
T PRK07529 480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS--ATEAELLAFARDHIAERAAVPKHVRILDALPKTAVG 557 (632)
T ss_pred HHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC--CCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCC
Confidence 999999999999999999999999988999999999988765 678899999999997 47999999999999999999
Q ss_pred cccHHHHHHHHHh
Q 044926 541 KIQKFVLREIAEN 553 (569)
Q Consensus 541 Ki~r~~l~~~~~~ 553 (569)
|++|++|++.+..
T Consensus 558 Ki~r~~Lr~~~~~ 570 (632)
T PRK07529 558 KIFKPALRRDAIR 570 (632)
T ss_pred cccHHHHHHHHHH
Confidence 9999999987765
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-69 Score=570.41 Aligned_cols=528 Identities=27% Similarity=0.361 Sum_probs=438.4
Q ss_pred CCCCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 6 PSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 6 ~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
+.+...++.|+.++|.+++..+|+++|+++.++.+||+||.+++.++|..|.+. |+++||+|+++++|+++++++++||
T Consensus 2 ~~~~~~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 81 (546)
T PRK08314 2 PKSLTLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAI 81 (546)
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 345667889999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccc-------cccCC
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAV-------SSQSH 157 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 157 (569)
+++|++++|++|..+.+++.++++.++++++|++.+....+........ ...++.......... .....
T Consensus 82 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 82 LRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLR----LRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred HHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccC----cceEEEecchhhcccccccCccccccc
Confidence 9999999999999999999999999999999999887766655433321 233333221110000 00000
Q ss_pred CCCC--CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEE
Q 044926 158 HPNI--SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYL 235 (569)
Q Consensus 158 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~ 235 (569)
.... ........+++.+..... .......++++++++|||||||.||+|.++|++++.++......+++..+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l 235 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVL 235 (546)
T ss_pred ccccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEE
Confidence 0000 000112345554443221 112235678999999999999999999999999999888877778889999999
Q ss_pred EecCchhhhhhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEe
Q 044926 236 WTLPMFHSNGWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTA 314 (569)
Q Consensus 236 ~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 314 (569)
+..|++|..|+.. .+.++..|+++++.+.+++..+++.++++++|++.++|.++..+.+........+. ++|.+++|
T Consensus 236 ~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~--~l~~~~~g 313 (546)
T PRK08314 236 AVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLS--SLRYIGGG 313 (546)
T ss_pred EEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCch--hhheeeec
Confidence 9999999999865 56778899999999889999999999999999999999999998876544444444 89999999
Q ss_pred CCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCC
Q 044926 315 GAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKR 393 (569)
Q Consensus 315 g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~ 393 (569)
|+++++.+.+++. .+++++++.||+||++......... .....++|.|.++. +++|+|++++..++.
T Consensus 314 G~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~~~i~d~~~~~~~~~ 381 (546)
T PRK08314 314 GAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPD-----------RPKLQCLGIPTFGV-DARVIDPETLEELPP 381 (546)
T ss_pred cccCCHHHHHHHHHHcCCcEEecccccccccceecCCCc-----------CCCCCccCcccCCe-EEEEEeCCCCcCCCC
Confidence 9999999999987 5799999999999998665432210 11235789999998 999999888888888
Q ss_pred CCCceeEEEEecCcccccccCCccccccccC---CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHH
Q 044926 394 DGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT---DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470 (569)
Q Consensus 394 ~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~ 470 (569)
+ +.|||+++|++++.||+++++.+...|. +++||+|||+|+++++|.+++.||.+|+|+++|++|+|.+||++|.
T Consensus 382 g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~ 459 (546)
T PRK08314 382 G--EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY 459 (546)
T ss_pred C--CceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH
Confidence 7 7899999999999999999988877763 2459999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 471 ~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
++|+|.+++|++.++...++.++++++..++.....+.++++++++++++++++|..++++++||+|.+||++|++|++.
T Consensus 460 ~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~ 539 (546)
T PRK08314 460 KHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQ 539 (546)
T ss_pred hCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHH
Confidence 99999999999999988888999999987765433567899999999999999999999999999999999999999887
Q ss_pred HHhcC
Q 044926 551 AENMG 555 (569)
Q Consensus 551 ~~~~~ 555 (569)
.+...
T Consensus 540 ~~~~~ 544 (546)
T PRK08314 540 EKARA 544 (546)
T ss_pred Hhhhc
Confidence 76543
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-70 Score=585.69 Aligned_cols=520 Identities=22% Similarity=0.263 Sum_probs=410.8
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEe----CC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIY----NN-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELH 81 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~----~~-----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~ 81 (569)
....|+.++|+++++.+|+++|+.+ .+ +.+||+||.++++++|.+|++.|+++||+|+|+++|+++|++++
T Consensus 41 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~ 120 (651)
T PLN02736 41 PEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD 120 (651)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence 3456899999999999999999953 11 46999999999999999999999999999999999999999999
Q ss_pred HHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCC
Q 044926 82 FAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
+||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+. .+.++.++...... .... .
T Consensus 121 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~---l~~ii~~~~~~~~~-~~~~----~ 192 (651)
T PLN02736 121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPL-PSLP----S 192 (651)
T ss_pred HHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCC---ceEEEEECCCchhh-hhhh----c
Confidence 99999999999999999999999999999999999998776665554433321 34455443221100 0000 0
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCch
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
..+.....++++++.............++|+++|+|||||||.||||.+||+++...+......+++.++|++++.+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~ 272 (651)
T PLN02736 193 GTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLA 272 (651)
T ss_pred cCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHH
Confidence 00111345666665433221122235678999999999999999999999999999888888888899999999999999
Q ss_pred hhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCC------------------------
Q 044926 242 HSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD------------------------ 297 (569)
Q Consensus 242 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~------------------------ 297 (569)
|.+++...+.+++.|+++++.+. ++..+++.|++++||+++++|.++..+.+...
T Consensus 273 h~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (651)
T PLN02736 273 HIYERVNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQA 351 (651)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999887888888998877654 88899999999999999999999988765310
Q ss_pred -----CCCC------------CCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCc
Q 044926 298 -----PDKK------------PLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359 (569)
Q Consensus 298 -----~~~~------------~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~ 359 (569)
.... .+ .+++|.+++||+++++++.+.+. .+++++++.||+||+++.++.....
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l-g~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~------- 423 (651)
T PLN02736 352 LENGKNPSPMWDRLVFNKIKAKL-GGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEG------- 423 (651)
T ss_pred HHcCCCCCchHHHHHHHHHHHHh-cCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCC-------
Confidence 0000 01 03799999999999999999988 5799999999999997665543211
Q ss_pred HHHHhhhhcccCcccccceeeEEeCCCCCcccCCC-CCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEe
Q 044926 360 AAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRD-GSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMH 438 (569)
Q Consensus 360 ~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~-~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 438 (569)
.....++|.|.+++ +++|+|.+++.....+ ..+.|||+++||+++.||+++++.+...|..+|||+|||+|+++
T Consensus 424 ----~~~~~~vG~p~pg~-~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d 498 (651)
T PLN02736 424 ----DNLSGHVGSPNPAC-EVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWL 498 (651)
T ss_pred ----CCCCCccCCccCce-EEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEc
Confidence 11345789999999 9999985443211111 11469999999999999999999999999779999999999999
Q ss_pred cCCcEEEeccCCCeEEe-CceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCC------CCCCHHHH
Q 044926 439 SDGYLEIKDRSKDVIIS-GGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK------SKPTEKEM 511 (569)
Q Consensus 439 ~dg~l~~~GR~~~~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~l 511 (569)
+||++++.||.+|+||+ +|++|+|.+||.+|.++|.|.+|+|++. .+++.++++|++.++.- ......++
T Consensus 499 ~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~ 575 (651)
T PLN02736 499 PGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDL 575 (651)
T ss_pred CCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCH
Confidence 99999999999999995 7999999999999999999999999984 24678999998865310 00111223
Q ss_pred HHHHh------------------ccCCCCccccEEEEecccC------CCCCCcccHHHHHHHHHhcC
Q 044926 512 IEYCR------------------GRLPHYMVPKTVVFMDELP------KTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 512 ~~~l~------------------~~l~~~~~p~~~~~~~~iP------~t~~GKi~r~~l~~~~~~~~ 555 (569)
.++++ +.|+.+++|+.++++++.| +|++||++|+++++.|++..
T Consensus 576 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i 643 (651)
T PLN02736 576 KQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAI 643 (651)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHH
Confidence 22222 3699999999999999876 79999999999999987653
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=578.31 Aligned_cols=515 Identities=25% Similarity=0.347 Sum_probs=417.4
Q ss_pred chHHHHHHHHHHcCCCCeEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 15 TPLVFLERAATVYGDSPSIIYNN------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
...++|+++++.+|+++|+++.+ +.+||+||.+++.++|..|++.|+++||+|+++++|+++++++++||+++|
T Consensus 58 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 137 (625)
T TIGR02188 58 VSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIG 137 (625)
T ss_pred HHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 45678888888999999998743 489999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
++++|+++.++.+++.+++++++++++|+++.. ...+.+.....+. ....++++.......
T Consensus 138 av~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------- 207 (625)
T TIGR02188 138 AIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPV--SVEHVLVVRRTGNPV-------- 207 (625)
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCC--CccEEEEEcCCCCCc--------
Confidence 999999999999999999999999999998753 2333333332221 134455543321100
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHh-hhhccCCCCCCCEEEEec
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV-NTLSDWSVPTQPVYLWTL 238 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~~~ 238 (569)
..... ....+.+++....... ......++++++|+|||||||.||||+++|.+++.... .....+++.++|++++..
T Consensus 208 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 285 (625)
T TIGR02188 208 PWVEG-RDVWWHDLMAKASAYC-EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTA 285 (625)
T ss_pred Ccccc-ccccHHHHHhhcCCCC-CceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECC
Confidence 00000 0133555544322211 12235678999999999999999999999999765443 344456888999999999
Q ss_pred CchhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 239 PMFHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 239 pl~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
|+.|..+..+ .+.+++.|+++++.+. .++..+++.++++++|++.++|+++..|.+..........++++|.+++
T Consensus 286 ~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~ 365 (625)
T TIGR02188 286 DVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGS 365 (625)
T ss_pred CchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEE
Confidence 9999988755 6777889999988753 4799999999999999999999999999987644333333459999999
Q ss_pred eCCCCcHHHHHHHH-hcC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCc
Q 044926 314 AGAPPPAAVLLRTE-SLG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGV 389 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~ 389 (569)
+|+++++++.+++. .++ +++++.||+||+++.++..... .......++|.|.+++ +++|+|+ +|.
T Consensus 366 ~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~---------~~~~~~~~~G~p~~g~-~~~i~d~-~g~ 434 (625)
T TIGR02188 366 VGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG---------ATPTKPGSATLPFFGI-EPAVVDE-EGN 434 (625)
T ss_pred ecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCC---------CCCcCCCcccCCcCCc-eEEEECC-CCC
Confidence 99999999999887 443 8899999999998776543211 0112345789999998 9999995 777
Q ss_pred ccC-CCCCceeEEEEec--CcccccccCCccccccccC--CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHH
Q 044926 390 SAK-RDGSTLGEIVLRG--GCIMLGYLKDPIGTRKCMT--DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVE 464 (569)
Q Consensus 390 ~~~-~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~ 464 (569)
.++ .+ +.|||+++| |+++.|||++++.+...+. .+|||+|||+|++++||++++.||.||+||++|++|+|.+
T Consensus 435 ~~~~~g--~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~e 512 (625)
T TIGR02188 435 PVEGPG--EGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAE 512 (625)
T ss_pred CCCCCC--CeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHH
Confidence 777 66 899999999 6899999999987666553 3789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCC-CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCccc
Q 044926 465 VESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK-PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543 (569)
Q Consensus 465 iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~ 543 (569)
||++|.++|+|.+++|++.+++..|+.++++|++.++.... ...++|+++++++|+.+++|+.|+++++||+|++||++
T Consensus 513 IE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~ 592 (625)
T TIGR02188 513 IESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIM 592 (625)
T ss_pred HHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccch
Confidence 99999999999999999999998899999999988765411 13478999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 044926 544 KFVLREIAENM 554 (569)
Q Consensus 544 r~~l~~~~~~~ 554 (569)
|+.|++++...
T Consensus 593 r~~l~~~~~~~ 603 (625)
T TIGR02188 593 RRLLRKIAAGE 603 (625)
T ss_pred HHHHHHHHcCC
Confidence 99999998754
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=563.89 Aligned_cols=508 Identities=31% Similarity=0.464 Sum_probs=427.1
Q ss_pred CCCCCCCCCchHHHHHHHHHHcCCCCeEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH
Q 044926 6 PSPANSTPLTPLVFLERAATVYGDSPSIIYNN------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79 (569)
Q Consensus 6 ~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~ 79 (569)
.....|++.|+.++|++.++.+|+++|+++.+ +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++
T Consensus 16 ~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~ 95 (547)
T PRK13295 16 IAAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTV 95 (547)
T ss_pred hcCCCCcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHH
Confidence 34556888899999999999999999999865 899999999999999999999999999999999999999999
Q ss_pred HHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCCCCCCCCEEEEeCCCcccccc
Q 044926 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPPDLKPPPLVLISDDDDAAVSS 154 (569)
Q Consensus 80 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (569)
++|||+++|++++|++|.++.+++.++++.++++++|+++... +...+...... ....++.++....
T Consensus 96 ~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----- 167 (547)
T PRK13295 96 LYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELP---ALRHVVVVGGDGA----- 167 (547)
T ss_pred HHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCC---CcceEEEecCCCc-----
Confidence 9999999999999999999999999999999999999987642 22222222221 1334444433211
Q ss_pred cCCCCCCCCCcccchhhHhhhcC-----CC--CcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC
Q 044926 155 QSHHPNISDDQFFSTYESLVAKG-----DP--EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS 227 (569)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~ 227 (569)
..+.+++... .. ..........+++++++|||||||.||+|.++|++++..+......++
T Consensus 168 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~ 234 (547)
T PRK13295 168 -------------DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLG 234 (547)
T ss_pred -------------cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhC
Confidence 1222222111 00 000111245689999999999999999999999999988888777888
Q ss_pred CCCCCEEEEecCchhhhhhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcC
Q 044926 228 VPTQPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLA 306 (569)
Q Consensus 228 ~~~~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~ 306 (569)
+..++++++..|++|..++.. .+.++..|+++++.+.+++..+++.++++++|++.++|.++..+..........++
T Consensus 235 ~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~-- 312 (547)
T PRK13295 235 LGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVS-- 312 (547)
T ss_pred CCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcc--
Confidence 999999999999999998765 66778899999888888999999999999999999999999999887655444555
Q ss_pred CCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCC
Q 044926 307 KPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDP 385 (569)
Q Consensus 307 ~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~ 385 (569)
++|.+++||+++++.+.++++ .+++++++.||+||++.....+.... .......+|.|.+++ .++|+|+
T Consensus 313 ~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~v~i~d~ 382 (547)
T PRK13295 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDP---------DERASTTDGCPLPGV-EVRVVDA 382 (547)
T ss_pred cceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCc---------chhccCccccccCCc-EEEEECC
Confidence 899999999999999999987 57999999999999976554432111 111234679999988 9999997
Q ss_pred CCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHH
Q 044926 386 KSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465 (569)
Q Consensus 386 ~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~i 465 (569)
++.+++.| +.|||+++|+.++.||+++++.+... .+|||+|||+|+++++|++++.||.+|+++.+|++|+|.+|
T Consensus 383 -~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~I 457 (547)
T PRK13295 383 -DGAPLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEI 457 (547)
T ss_pred -CCCCCCCC--CCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHH
Confidence 57777777 89999999999999999999887765 47899999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccH
Q 044926 466 ESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQK 544 (569)
Q Consensus 466 E~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r 544 (569)
|++|.++++|.+++|++.+++..|+.++++|++.++.. ...+++++++++ .++.+++|..++++++||+|.+||++|
T Consensus 458 E~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r 535 (547)
T PRK13295 458 EALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQS--LDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQK 535 (547)
T ss_pred HHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCC--CCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccH
Confidence 99999999999999999998888888999999876644 677899999986 799999999999999999999999999
Q ss_pred HHHHHHHHh
Q 044926 545 FVLREIAEN 553 (569)
Q Consensus 545 ~~l~~~~~~ 553 (569)
++|++++.+
T Consensus 536 ~~L~~~~~~ 544 (547)
T PRK13295 536 FRLREMLRG 544 (547)
T ss_pred HHHHHHHhc
Confidence 999998866
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-69 Score=565.95 Aligned_cols=499 Identities=18% Similarity=0.231 Sum_probs=403.2
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCC-eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNN-ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~-~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
+...++.+.|.+.++.+|+++|+.+.+ +.+||+||.++++++|..|.+ .+||+|+|+++|++++++++|||+++|+
T Consensus 16 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~ 92 (539)
T PRK06334 16 RSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGK 92 (539)
T ss_pred CcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCC
Confidence 566889999999999999999998765 689999999999999999987 3899999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|+++..+.+++.++++.++++++|++.+....+.+....... . ...++.+.+... . ..
T Consensus 93 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~-~----------------~~ 153 (539)
T PRK06334 93 IPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAE-Y-PFSLIYMEEVRK-E----------------LS 153 (539)
T ss_pred eeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhcccc-c-cccEEEEehhhh-h----------------cc
Confidence 999999999999999999999999999987766554443221000 0 122333322100 0 00
Q ss_pred hhHhhh-----c-CCC---CcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCc
Q 044926 170 YESLVA-----K-GDP---EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240 (569)
Q Consensus 170 ~~~~~~-----~-~~~---~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl 240 (569)
+.+... . ... .........++++++++|||||||.||+|.++|+++..........++++.+|++++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~ 233 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP 233 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence 000000 0 000 0000112457899999999999999999999999999888777777888999999999999
Q ss_pred hhhhhhhH-HHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCC
Q 044926 241 FHSNGWCF-PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPP 318 (569)
Q Consensus 241 ~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l 318 (569)
+|.+++.. .+.+++.|+++++.. .+++..+++.|+++++|++.++|+++..|++........++ ++|.+++||+++
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~i~~gG~~l 311 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLP--SLRFVVIGGDAF 311 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccc--cccEEEECCccC
Confidence 99999865 567788899887765 47999999999999999999999999999887644444444 999999999999
Q ss_pred cHHHHHHHH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCC
Q 044926 319 PAAVLLRTE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGS 396 (569)
Q Consensus 319 ~~~~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~ 396 (569)
++.+.+++. .+ ++.+++.||+||++.++...... ......++|.|.+++ +++|+|++++.+++.|
T Consensus 312 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~----------~~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g-- 378 (539)
T PRK06334 312 KDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVN----------SPKHESCVGMPIRGM-DVLIVSEETKVPVSSG-- 378 (539)
T ss_pred CHHHHHHHHHHCCCCeEEecccccccCceEEeccCC----------CCCCCCcCceecCCC-EEEEEcCCCCccCCCC--
Confidence 999999988 45 68999999999998666543211 011234689999998 9999998788888887
Q ss_pred ceeEEEEecCcccccccCCcccccccc-CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCc
Q 044926 397 TLGEIVLRGGCIMLGYLKDPIGTRKCM-TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAV 475 (569)
Q Consensus 397 ~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i 475 (569)
+.|||+++|++++.||+++++.+.... ..++||+|||+|+++++|++++.||.+|+||++|++|+|.+||++|.+||+|
T Consensus 379 ~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v 458 (539)
T PRK06334 379 ETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQ 458 (539)
T ss_pred ceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCC
Confidence 899999999999999999987654322 3467999999999999999999999999999999999999999999999999
Q ss_pred ce------eEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 476 NE------AAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 476 ~~------~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
.+ ++|++.+++. ..++++++. . .+.++++++++++ ++.|+.|..++++++||+|++||++|++|+
T Consensus 459 ~~~~~~~~~~v~~~~~~~--~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~ 530 (539)
T PRK06334 459 NAADHAGPLVVCGLPGEK--VRLCLFTTF--P----TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLN 530 (539)
T ss_pred ccccccCceEEEcCCCCc--eEEEEEEec--c----CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHH
Confidence 97 7777776432 234444442 1 2457899999886 788999999999999999999999999999
Q ss_pred HHHHhc
Q 044926 549 EIAENM 554 (569)
Q Consensus 549 ~~~~~~ 554 (569)
+....+
T Consensus 531 ~~~~~~ 536 (539)
T PRK06334 531 ALAKSL 536 (539)
T ss_pred HHHHHh
Confidence 987764
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=561.27 Aligned_cols=494 Identities=27% Similarity=0.360 Sum_probs=415.6
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
+.++.++|.++++++|+++|+++.++.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 47899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|+++.++.+++.++++.++++++|++.+....+......... ...++.+.+... ...++.
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----------------~~~~~~ 181 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQ---ATRIVAWTDEDH-----------------DLTVEV 181 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccc---cceEEEecCCcc-----------------cccHHH
Confidence 999999999999999999999999998776655444322111 122222221100 012333
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
+....... . ....+++.++++|||||||.||+|.++|++++.........+.+..+++++...|++|.+++...+.+
T Consensus 182 ~~~~~~~~-~--~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 258 (537)
T PRK13382 182 LIAAHAGQ-R--PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLA 258 (537)
T ss_pred HhhccCcC-C--CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHH
Confidence 33221111 1 11345789999999999999999999999888877777777788899999999999999999878888
Q ss_pred HHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCC
Q 044926 253 AAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGF 331 (569)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~ 331 (569)
+..|+++++...+++..+++.|+++++|++.++|+++..+.+............++|.+++||+++++.+.+.+. .++.
T Consensus 259 l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 338 (537)
T PRK13382 259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGD 338 (537)
T ss_pred HhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCC
Confidence 889999888888999999999999999999999999999987653322222233899999999999999999987 5788
Q ss_pred eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccccc
Q 044926 332 KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLG 411 (569)
Q Consensus 332 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 411 (569)
++++.||+||++.++..+. ........++|.|.+++ .++|+|+ ++.+++.| +.|||+++|++++.|
T Consensus 339 ~i~~~YG~TE~~~~~~~~~----------~~~~~~~~~vG~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~~g 404 (537)
T PRK13382 339 VIYNNYNATEAGMIATATP----------ADLRAAPDTAGRPAEGT-EIRILDQ-DFREVPTG--EVGTIFVRNDTQFDG 404 (537)
T ss_pred cEEecccccccCcceecCh----------hHhccCCCCccccCcCc-EEEEECC-CCCCCCCC--CeeEEEEEcCCcccC
Confidence 9999999999987655432 11122345789999998 9999998 67778777 899999999999999
Q ss_pred ccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCce
Q 044926 412 YLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGET 491 (569)
Q Consensus 412 y~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~ 491 (569)
|+ ++.+. .+. ++||+|||++++++||++++.||.+|+||.+|++|++.+||..|.++|+|.+++|++.+++..|+.
T Consensus 405 Y~--~~~~~-~~~-~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~ 480 (537)
T PRK13382 405 YT--SGSTK-DFH-DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQR 480 (537)
T ss_pred cc--ccchh-hcc-CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCE
Confidence 98 33332 344 789999999999999999999999999999999999999999999999999999999999888888
Q ss_pred eEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 492 PCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
++++|++.++.. ...++++++++++|+.+++|..++++++||+|++||++|++|++
T Consensus 481 ~~a~vv~~~~~~--~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 481 LAAFVVLKPGAS--ATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred EEEEEEECCCCC--CCHHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 999999876654 67789999999999999999999999999999999999999864
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=561.38 Aligned_cols=507 Identities=27% Similarity=0.394 Sum_probs=426.9
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
..+|+.+++.+++..+|+++|+++. ++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~ 100 (537)
T PLN02246 21 NHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGA 100 (537)
T ss_pred CCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCE
Confidence 4568999999999999999999875 47899999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|++|..+.+++.++++.++++++|++....+.+.+..... ...++.++.... ....
T Consensus 101 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~----------------~~~~ 159 (537)
T PLN02246 101 VTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDD-----GVTVVTIDDPPE----------------GCLH 159 (537)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcC-----CceEEEeCCCCC----------------Ccee
Confidence 9999999999999999999999999999987766655443211 123333332110 0133
Q ss_pred hhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc----cCCCCCCCEEEEecCchhhhh
Q 044926 170 YESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS----DWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~~~~g 245 (569)
+.++........ ......++++++++|||||||.||+|.++|+++......... .+++..+|++++..|++|.++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~ 238 (537)
T PLN02246 160 FSELTQADENEL-PEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS 238 (537)
T ss_pred HHHHhcCCCCCC-CCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHH
Confidence 444333222111 112345789999999999999999999999999876654432 467889999999999999999
Q ss_pred hhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHH
Q 044926 246 WCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLL 324 (569)
Q Consensus 246 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~ 324 (569)
+.. .+.++..|+++++.+.+++..+++.|+++++|++.++|.++..|++........++ ++|.+++||+.+++++.+
T Consensus 239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~--~lr~~~~gg~~l~~~~~~ 316 (537)
T PLN02246 239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLS--SIRMVLSGAAPLGKELED 316 (537)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCcc--ceeEEEEecCcCCHHHHH
Confidence 865 55667889999999889999999999999999999999999999887654444444 899999999999999999
Q ss_pred HHHh-c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEE
Q 044926 325 RTES-L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIV 402 (569)
Q Consensus 325 ~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 402 (569)
.+++ + ++.+++.||+||++.++..+..... ........++|.|.++. +++|+|++++.+++.| +.|||+
T Consensus 317 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~ 387 (537)
T PLN02246 317 AFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK------EPFPVKSGSCGTVVRNA-ELKIVDPETGASLPRN--QPGEIC 387 (537)
T ss_pred HHHHHcCCCeEeccccccccCcccccccccCC------CCccccCCccccccCCc-EEEEecCCCCCcCCCC--CceEEE
Confidence 9884 4 7889999999999876554321100 00111234689999998 9999998889888887 889999
Q ss_pred EecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 403 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
++|+.++.||+++++.+...+..++||+|||+|+++++|++++.||.+|+|+.+|++|++.+||+.|.++|+|.+++|++
T Consensus 388 v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~ 467 (537)
T PLN02246 388 IRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVP 467 (537)
T ss_pred EECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEc
Confidence 99999999999999999888877899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
.++...++.++++++..++.. ...++++++++++++.++.|..++++++||+|++||++|++|++++.+
T Consensus 468 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 468 MKDEVAGEVPVAFVVRSNGSE--ITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ccCccCCceeEEEEEeCCCCC--CCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 998888888899988876654 677899999999999999999999999999999999999999998754
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=571.29 Aligned_cols=512 Identities=26% Similarity=0.355 Sum_probs=413.8
Q ss_pred HHHHHHHHHHcCCCCeEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 17 LVFLERAATVYGDSPSIIYNN------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 17 ~~~l~~~a~~~p~~~al~~~~------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.++|+++++.+|+++|+++.+ +.+||+||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 577888888999999999743 47999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccH---------HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCC
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSR---------ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
++|++|.++.+++.+++++++++++|+++... +.+.+...... ....++.+....... ..
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~ 218 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCP---SVEKVIVVRRTGGDV--------DW 218 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCC---CccEEEEEcCCCCCc--------Cc
Confidence 99999999999999999999999999976532 22333332222 134455444321100 00
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHh-hhhccCCCCCCCEEEEecCc
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV-NTLSDWSVPTQPVYLWTLPM 240 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl 240 (569)
.. .....+.++....... .......++++++|+|||||||.||||.++|++++.... .....+++..+|++++..|+
T Consensus 219 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 296 (637)
T PRK00174 219 VE-GRDLWWHELVAGASDE-CEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADV 296 (637)
T ss_pred CC-CCcccHHHHHhhcCCC-CCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCc
Confidence 00 0013345544332211 112235578999999999999999999999999865443 33445688889999999999
Q ss_pred hhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeC
Q 044926 241 FHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG 315 (569)
Q Consensus 241 ~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g 315 (569)
+|..+..+ .+.+++.|+++++.+. .++..+++.|+++++|++.++|+++..|++..........+.++|.++++|
T Consensus 297 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G 376 (637)
T PRK00174 297 GWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVG 376 (637)
T ss_pred hHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeC
Confidence 99988754 6777889999888752 479999999999999999999999999988754333333344999999999
Q ss_pred CCCcHHHHHHHH-hcC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCccc
Q 044926 316 APPPAAVLLRTE-SLG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSA 391 (569)
Q Consensus 316 ~~l~~~~~~~~~-~~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~ 391 (569)
+++++++.+++. .++ +++++.||+||+++.+....... ......++|.|.+++ +++|+|+ +|..+
T Consensus 377 e~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~~vG~p~~g~-~~~i~d~-~g~~~ 445 (637)
T PRK00174 377 EPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA---------TPLKPGSATRPLPGI-QPAVVDE-EGNPL 445 (637)
T ss_pred CCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC---------CCcCCCcccCCCCCc-eEEEECC-CCCCC
Confidence 999999998887 444 78999999999987665322110 011235789999998 9999997 67788
Q ss_pred CCCCCceeEEEEec--CcccccccCCcccccccc--CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHH
Q 044926 392 KRDGSTLGEIVLRG--GCIMLGYLKDPIGTRKCM--TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVES 467 (569)
Q Consensus 392 ~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~ 467 (569)
+.| +.|||+++| |++++|||++++.+...+ ..+|||+|||+|++++||++++.||.||+||++|++|+|.+||+
T Consensus 446 ~~g--~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~ 523 (637)
T PRK00174 446 EGG--EGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIES 523 (637)
T ss_pred CCC--CcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHH
Confidence 777 889999999 689999999998766654 23789999999999999999999999999999999999999999
Q ss_pred HHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC-CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHH
Q 044926 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFV 546 (569)
Q Consensus 468 ~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~ 546 (569)
+|.++|+|.+++|++.+++..|+.++++|++.++... +...++|+++++++|+.++.|..++++++||+|++||++|+.
T Consensus 524 ~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~ 603 (637)
T PRK00174 524 ALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRI 603 (637)
T ss_pred HHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHH
Confidence 9999999999999999998889999999998876541 112578999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 044926 547 LREIAENM 554 (569)
Q Consensus 547 l~~~~~~~ 554 (569)
|++...+.
T Consensus 604 L~~~~~~~ 611 (637)
T PRK00174 604 LRKIAEGE 611 (637)
T ss_pred HHHHHcCC
Confidence 99987655
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=557.20 Aligned_cols=491 Identities=28% Similarity=0.443 Sum_probs=419.7
Q ss_pred chHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 15 TPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
.+.++|+++|+.+||++|+++.++.+||+||.++++++|..|++ .|+++|++|+++++|+++++++++||+++|++++|
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 47889999999999999999999999999999999999999986 69999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++..+.+++.++++.++++.++++++....+.+...... ...++.+.+ +.+.
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----------------------~~~~ 135 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY----VQRVISITS-----------------------LKEI 135 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC----cceEEEecc-----------------------hHhh
Confidence 9999999999999999999999999876655544332211 122332221 1111
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWAM 252 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~~ 252 (569)
...... ...+...+++++++|||||||.||+|.++|+++..........+++..+|++++..|++|.+|+.. .+.+
T Consensus 136 ~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~ 212 (496)
T PRK06839 136 EDRKID---NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPT 212 (496)
T ss_pred hccCCC---CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHH
Confidence 111111 111244578999999999999999999999998877666666778899999999999999999866 4566
Q ss_pred HHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCe
Q 044926 253 AAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFK 332 (569)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~ 332 (569)
+..|+++++.+.+++..+++.++++++|++.++|.++..+++........+. ++|.+++||+++++++.+.+++.+++
T Consensus 213 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gG~~~~~~~~~~~~~~g~~ 290 (496)
T PRK06839 213 LFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQ--SVRWFYNGGAPCPEELMREFIDRGFL 290 (496)
T ss_pred HhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCc--ccceEEECCCCCCHHHHHHHHHhCCe
Confidence 7888888888889999999999999999999999999999987654444444 99999999999999999999877999
Q ss_pred eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccc
Q 044926 333 VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGY 412 (569)
Q Consensus 333 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 412 (569)
+++.||+||++..+..+... .......++|.|.++. .++|+|+ .+..++.| +.|||+++|+.++.||
T Consensus 291 ~~~~YG~tE~~~~~~~~~~~---------~~~~~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy 357 (496)
T PRK06839 291 FGQGFGMTETSPTVFMLSEE---------DARRKVGSIGKPVLFC-DYELIDE-NKNKVEVG--EVGELLIRGPNVMKEY 357 (496)
T ss_pred eEeeccCCCCCcceEecccc---------cccccCCCCcccCCCc-eEEEECC-CcCCCCCC--CceEEEEECCCcchhh
Confidence 99999999998765443211 1112245789999998 9999998 45557777 8999999999999999
Q ss_pred cCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCcee
Q 044926 413 LKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492 (569)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~ 492 (569)
+++++.+...+. +|||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||++|.++|+|.+++|++.+++..|+.+
T Consensus 358 ~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 436 (496)
T PRK06839 358 WNRPDATEETIQ-DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIP 436 (496)
T ss_pred cCChHHHHHHHc-CCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceE
Confidence 999998887776 8999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 493 CAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 493 ~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
+++|+..++.. ...++++++++++++.+++|..++++++||+|.+||++|++|+++.++
T Consensus 437 ~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 437 IAFIVKKSSSV--LIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred EEEEEECCCCC--CCHHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 99999887655 677899999999999999999999999999999999999999988764
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=563.98 Aligned_cols=508 Identities=27% Similarity=0.404 Sum_probs=414.4
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCC--eeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNN--ITYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~--~~~Ty~el~~~v~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
.+++.+.+... ..+|+++|+++.. ..+||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++|+
T Consensus 39 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 117 (560)
T PLN02574 39 NLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGG 117 (560)
T ss_pred CCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCe
Confidence 34444444433 5789999999854 379999999999999999999 8999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|++|..+.+++.++++.++++++|++.+..+.+... ...++.+....... .. ......
T Consensus 118 v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~--------~~~~~~ 178 (560)
T PLN02574 118 IVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL---------GVPVIGVPENYDFD--SK--------RIEFPK 178 (560)
T ss_pred EEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc---------CCcEEecCcccccc--cC--------ccCccc
Confidence 999999999999999999999999999987765544321 11222222110000 00 001233
Q ss_pred hhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc----cCCC-CCCCEEEEecCchhhh
Q 044926 170 YESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS----DWSV-PTQPVYLWTLPMFHSN 244 (569)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~----~~~~-~~~d~~~~~~pl~~~~ 244 (569)
+.+++....... ......++++++++|||||||.||+|.++|+++...+..... .+.. ...++++..+|++|.+
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 257 (560)
T PLN02574 179 FYELIKEDFDFV-PKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIY 257 (560)
T ss_pred HHHHhhcCCccc-ccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHH
Confidence 454444332211 112245689999999999999999999999999877665432 2222 3567889999999999
Q ss_pred hhhHH-HHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCC-CCCCCCcCCCceEEEeCCCCcHHH
Q 044926 245 GWCFP-WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP-DKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 245 g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~-~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
|+... +..+..|+++++.+.+++..+++.|+++++|++.++|+++..+.+.... ....+. ++|.+++||+++++..
T Consensus 258 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~--~lr~~~~gg~~l~~~~ 335 (560)
T PLN02574 258 GLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLK--SLKQVSCGAAPLSGKF 335 (560)
T ss_pred HHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccc--cceEEEEecccCCHHH
Confidence 98764 4556779998888889999999999999999999999999999887533 223344 8999999999999999
Q ss_pred HHHHH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeE
Q 044926 323 LLRTE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400 (569)
Q Consensus 323 ~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 400 (569)
.+++. .+ ++.+++.||+||++.++...... .......++|.+.+++ +++|+|++++.+++.| +.||
T Consensus 336 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~---------~~~~~~~~vG~~~~~~-~v~i~d~~~g~~~~~g--~~Ge 403 (560)
T PLN02574 336 IQDFVQTLPHVDFIQGYGMTESTAVGTRGFNT---------EKLSKYSSVGLLAPNM-QAKVVDWSTGCLLPPG--NCGE 403 (560)
T ss_pred HHHHHHHCCCCcEEecccccccCceeecCCCc---------cccCCCCceeeeCCCc-EEEEEeCCCCcCCCCC--CCeE
Confidence 99887 45 78999999999997654421111 0112245789999998 9999998889888887 8999
Q ss_pred EEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEE
Q 044926 401 IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480 (569)
Q Consensus 401 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 480 (569)
||++|++++.||+++++.+...|..+|||+|||+|++++||++++.||.+|+||++|++|++.+||.+|.+||+|.+++|
T Consensus 404 i~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v 483 (560)
T PLN02574 404 LWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAV 483 (560)
T ss_pred EEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 99999999999999999998888779999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 481 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
++.+++..|+.++++|+..++.. .+.+++.++++++++.++.|+.++++++||+|++||++|+.|++++.+...+
T Consensus 484 ~~~~~~~~g~~~~a~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~~~ 558 (560)
T PLN02574 484 TAVPDKECGEIPVAFVVRRQGST--LSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVSS 558 (560)
T ss_pred EccccCCCCcceEEEEEeCCCCC--CCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhcccc
Confidence 99999888888899998876554 6778999999999999999999999999999999999999999998765543
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-68 Score=557.07 Aligned_cols=527 Identities=30% Similarity=0.473 Sum_probs=430.4
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeC--C--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYN--N--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~--~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 82 (569)
.++...+.++.++|++++..+|+..++.+. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~l 82 (539)
T PRK07008 3 GQMMDMPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYY 82 (539)
T ss_pred cccccCCCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 456667789999999999999999888752 2 689999999999999999999999999999999999999999999
Q ss_pred HhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCC
Q 044926 83 AVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNIS 162 (569)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (569)
||+++|++++|++|..+.+++.++++.+++++++++.+..+.+.+....... ...++.+.+..... ..
T Consensus 83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------~~- 150 (539)
T PRK07008 83 GVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPN---VKGWVAMTDAAHLP--------AG- 150 (539)
T ss_pred HHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCC---ceEEEEEccCCccc--------cC-
Confidence 9999999999999999999999999999999999998877665555443321 23333333221100 00
Q ss_pred CCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHH--hhhhccCCCCCCCEEEEecCc
Q 044926 163 DDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVA--VNTLSDWSVPTQPVYLWTLPM 240 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~--~~~~~~~~~~~~d~~~~~~pl 240 (569)
......++++......... .....++++++++|||||||.||+|.+||++++.+. ......+++..+|++++..|+
T Consensus 151 -~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 228 (539)
T PRK07008 151 -STPLLCYETLVGAQDGDYD-WPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPM 228 (539)
T ss_pred -CcccccHHHHhcccCCCcC-cccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCch
Confidence 0113445555443322211 123456789999999999999999999999986543 233346778899999999999
Q ss_pred hhhhhhhHHHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCc
Q 044926 241 FHSNGWCFPWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPP 319 (569)
Q Consensus 241 ~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~ 319 (569)
+|.+++...+.++..|+++++.+ .+++..+++.++++++|++.++|+++..+.+........+. ++|.++++|++++
T Consensus 229 ~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~--~l~~~~~~G~~l~ 306 (539)
T PRK07008 229 FHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFS--TLRRTVIGGSACP 306 (539)
T ss_pred HHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcc--cceEEEEcCCCCC
Confidence 99988877778888999988874 47899999999999999999999999999987655544444 9999999999999
Q ss_pred HHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCce
Q 044926 320 AAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL 398 (569)
Q Consensus 320 ~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~ 398 (569)
+.+.+++. .+++++++.||+||++..+..+.........+..........+|.|.+++ .++|+|+ ++..++.++++.
T Consensus 307 ~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~-~~~i~d~-~~~~~~~~~~~~ 384 (539)
T PRK07008 307 PAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGV-DMKIVGD-DGRELPWDGKAF 384 (539)
T ss_pred HHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccce-EEEEECC-CCCccCCCCCcc
Confidence 99999986 67999999999999987665443222111111111122345789999998 9999997 677776654467
Q ss_pred eEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCccee
Q 044926 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478 (569)
Q Consensus 399 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~ 478 (569)
|||+++|++++.||++++. ..+. ++||+|||+|++++||++++.||.+|+|+.+|.+++|.+||..|.++|.|.++
T Consensus 385 Gei~v~g~~~~~gy~~~~~---~~~~-~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~ 460 (539)
T PRK07008 385 GDLQVRGPWVIDRYFRGDA---SPLV-DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEA 460 (539)
T ss_pred eEEEEeCCccchhhcCChh---hhhc-CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEE
Confidence 9999999999999999873 2344 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 479 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
++++.+++.+++.++++|+..++.. .+.++++++++++++++++|..++++++||+|.+||++|++|++++.+...+
T Consensus 461 ~v~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~~~~ 537 (539)
T PRK07008 461 ACIACAHPKWDERPLLVVVKRPGAE--VTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDYVLP 537 (539)
T ss_pred EEEecCCchhccceEEEEEeCCCCc--cCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhhccc
Confidence 9999999887888888888776654 6788999999999999999999999999999999999999999999886543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-68 Score=556.84 Aligned_cols=507 Identities=33% Similarity=0.503 Sum_probs=434.7
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
...++.++|.+.+..+|+++|+++.++++||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~ 82 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV 82 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|+++..+.+++.+++++++++++++++............... ...++......... .......++
T Consensus 83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----------~~~~~~~~~ 148 (513)
T PRK07656 83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPA---LEHVVICETEEDDP-----------HTEKMKTFT 148 (513)
T ss_pred EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCC---ccEEEEEcCccccc-----------CccccccHH
Confidence 9999999999999999999999999998876655544332221 33444443322110 000124556
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PW 250 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~ 250 (569)
+++...... .......++++++++|||||||.||+|.++|.++...+......++++.+|++++..|++|.+++.. .+
T Consensus 149 ~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (513)
T PRK07656 149 DFLAAGDPA-ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVN 227 (513)
T ss_pred HHHhcCCCC-CCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHH
Confidence 655443321 1222356789999999999999999999999999988888888889999999999999999999876 56
Q ss_pred HHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hc
Q 044926 251 AMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL 329 (569)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~ 329 (569)
.++..|+++++.+..++..+++.|+++++|++.++|.++..+++........+. ++|.+++||+++++++.+++. .+
T Consensus 228 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~--~l~~v~~~g~~~~~~~~~~~~~~~ 305 (513)
T PRK07656 228 APLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLS--SLRLAVTGAASMPVALLERFESEL 305 (513)
T ss_pred HHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCcc--ceeeEEecCCCCCHHHHHHHHHHc
Confidence 778888888888888999999999999999999999999999998765554555 999999999999999999987 67
Q ss_pred CC-eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcc
Q 044926 330 GF-KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCI 408 (569)
Q Consensus 330 ~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 408 (569)
++ .+++.||+||+++++..+...... .....++|.|.++. +++|+|+ .+..++.| +.|||+++|+.+
T Consensus 306 ~~~~~~~~YG~tE~~~~~~~~~~~~~~--------~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~ 373 (513)
T PRK07656 306 GVDIVLTGYGLSEASGVTTFNRLDDDR--------KTVAGTIGTAIAGV-ENKIVNE-LGEEVPVG--EVGELLVRGPNV 373 (513)
T ss_pred CCCceEeEEccccCCCceeecCccccc--------cccCCCccccCCCc-EEEEECC-CCCCCCCC--CceEEEEEcchh
Confidence 88 899999999998887765432211 11245789999998 9999997 67888877 889999999999
Q ss_pred cccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCC
Q 044926 409 MLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFW 488 (569)
Q Consensus 409 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~ 488 (569)
+.||++++..+...+..++||+|||+|+++++|.+++.||.+|+++++|.++++.+||+.|.++++|.+++|++.+++..
T Consensus 374 ~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~ 453 (513)
T PRK07656 374 MKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERL 453 (513)
T ss_pred hhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCccc
Confidence 99999999888888877899999999999999999999999999999999999999999999999999999999998888
Q ss_pred CceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 489 GETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
|+.++++|+..++.. .+.++++++++++|+++++|..++++++||+|++||++|++|++
T Consensus 454 g~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 454 GEVGKAYVVLKPGAE--LTEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred CceEEEEEEECCCCC--CCHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 888889998876444 67889999999999999999999999999999999999999975
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-68 Score=560.67 Aligned_cols=518 Identities=25% Similarity=0.322 Sum_probs=418.3
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
.|+.++|+++++.+|+++|++..++.+||+||.++++++|..|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v 103 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 589999999999999999999999999999999999999999997 5999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCccccccc---C-----CCC--CCC
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQ---S-----HHP--NIS 162 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~--~~~ 162 (569)
|++|..+.+++.+++++++++++|++.+..+.+.+...... .+.++.....+....... . ... ...
T Consensus 104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK05677 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTG----VKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAY 179 (562)
T ss_pred ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccC----cceeEEecccccccchhhhhcccchhhcccccccc
Confidence 99999999999999999999999998876665544432211 233333221110000000 0 000 000
Q ss_pred CCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC--CC-CCCEEEEecC
Q 044926 163 DDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS--VP-TQPVYLWTLP 239 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~--~~-~~d~~~~~~p 239 (569)
.......+.+.+..............++++++++|||||||.||+|.++|+++..........+. +. ..+++++.+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 259 (562)
T PRK05677 180 HLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLP 259 (562)
T ss_pred CCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCc
Confidence 00012234444433222111122346789999999999999999999999999876655444333 33 3468899999
Q ss_pred chhhhhhhH-HHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCC
Q 044926 240 MFHSNGWCF-PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAP 317 (569)
Q Consensus 240 l~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~ 317 (569)
++|.+++.. .+..+..|+..++.+ ..++..+++.++++++|.+.++|+++..+.+........+. ++|.+++||++
T Consensus 260 l~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~--~lr~v~~gG~~ 337 (562)
T PRK05677 260 LYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFS--ALKLTLSGGMA 337 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChh--hceEEEEcCcc
Confidence 999999865 445566677666654 47899999999999999999999999999876533333334 89999999999
Q ss_pred CcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCC
Q 044926 318 PPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGS 396 (569)
Q Consensus 318 l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~ 396 (569)
+++.+.+.+. .+++++++.||+||++.++..+... .....++|.|.++. +++|+|+ ++..++.|
T Consensus 338 ~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~v~i~d~-~~~~~~~g-- 402 (562)
T PRK05677 338 LQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQ-----------AIQVGTIGIPVPST-LCKVIDD-DGNELPLG-- 402 (562)
T ss_pred CCHHHHHHHHHHcCCCeeccCCccccCcceeecCcc-----------CCCCCccCccCCCC-EEEEECC-CCCCCCCC--
Confidence 9999999888 4699999999999998766543211 11234689999998 9999997 57788877
Q ss_pred ceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcc
Q 044926 397 TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVN 476 (569)
Q Consensus 397 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~ 476 (569)
+.|||+++|+.++.||+++++.+...|..++||+|||+|++++||.+++.||.+|+|+.+|.+|+|.+||+.|.++++|.
T Consensus 403 ~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~ 482 (562)
T PRK05677 403 EVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVL 482 (562)
T ss_pred CCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCcc
Confidence 89999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 477 EAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 477 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+++|++.+++..++.++++++..++.. .+.++++++++++++.+++|..++++++||+|++||++|++|++++.+.
T Consensus 483 ~~~v~g~~~~~~g~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~ 558 (562)
T PRK05677 483 QCAAIGVPDEKSGEAIKVFVVVKPGET--LTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKK 558 (562)
T ss_pred EEEEEeccCccCCceEEEEEEeCCCCC--CCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHh
Confidence 999999999888888889988776644 6788999999999999999999999999999999999999998866543
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-68 Score=553.20 Aligned_cols=481 Identities=29% Similarity=0.447 Sum_probs=414.1
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
+|+.++|++++..+||++|+++.++.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
++++.+.+++.+++++++++.+|++............ ..++++
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-------------------------------------~~~~~~ 124 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-------------------------------------VKFAEL 124 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-------------------------------------ccHHHH
Confidence 9999999999999999999999998765443322100 001111
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~ 253 (569)
................+++++++|||||||.||+|.++|.++...+......++++.+|++++.+|++|.+++...+.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 204 (483)
T PRK03640 125 MNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSV 204 (483)
T ss_pred hhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHH
Confidence 11111111111224567899999999999999999999999988777777778899999999999999999998888889
Q ss_pred HhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCee
Q 044926 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKV 333 (569)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i 333 (569)
..|+++++.+..++..+++.++++++|++.++|+++..+.+..... .... ++|.+++||+++++...+.+++.++++
T Consensus 205 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~--~lr~~~~~g~~~~~~~~~~~~~~~~~~ 281 (483)
T PRK03640 205 IYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPS--SFRCMLLGGGPAPKPLLEQCKEKGIPV 281 (483)
T ss_pred hcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCC--cceEEEEcCCCCCHHHHHHHHHhCCCe
Confidence 9999999998899999999999999999999999999998765433 2223 899999999999999999888789999
Q ss_pred eecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccccccc
Q 044926 334 SHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413 (569)
Q Consensus 334 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~ 413 (569)
++.||+||++..+..... ........++|.|.+++ +++|.|+ +.+++.+ +.|||+++|+.++.||+
T Consensus 282 ~~~YG~tE~~~~~~~~~~---------~~~~~~~~~vG~p~~~~-~~~i~~~--~~~~~~g--~~Gel~v~g~~~~~gy~ 347 (483)
T PRK03640 282 YQSYGMTETASQIVTLSP---------EDALTKLGSAGKPLFPC-ELKIEKD--GVVVPPF--EEGEIVVKGPNVTKGYL 347 (483)
T ss_pred eeeeccCcccccccccCc---------ccccccCCCcccccCCc-EEEEecC--CCcCCCC--CceEEEEECcchhhhhc
Confidence 999999998754433221 11122345789999998 9999985 3566666 89999999999999999
Q ss_pred CCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeE
Q 044926 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPC 493 (569)
Q Consensus 414 ~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~ 493 (569)
++++.+...|. ++||+|||++++++||.+++.||.+|++|.+|.+|++.+||+.+.++++|.++++++.+++..++.++
T Consensus 348 ~~~~~~~~~~~-~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~ 426 (483)
T PRK03640 348 NREDATRETFQ-DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPV 426 (483)
T ss_pred CCHHHHHHHHh-cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceE
Confidence 99998888886 89999999999999999999999999999999999999999999999999999999998887777777
Q ss_pred EEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 494 AFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 494 ~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
++++.... .+.++++++++++++++++|..++++++||+|++||++|++|++++++
T Consensus 427 ~~~~~~~~----~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 427 AFVVKSGE----VTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EEEEeCCC----CCHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 87775432 677899999999999999999999999999999999999999999875
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=556.75 Aligned_cols=505 Identities=28% Similarity=0.386 Sum_probs=424.4
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
+..+.|+.++|+++++.+|+++|+++.++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 17 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~ 96 (542)
T PRK06155 17 PPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGA 96 (542)
T ss_pred CccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCC
Confidence 44778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|+++.++.+++.++++++++++++++.+....+.+..... .....++.++.... . ..... ..
T Consensus 97 ~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~--------~~~~~---~~ 161 (542)
T PRK06155 97 IAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD---LPLPAVWLLDAPAS-V--------SVPAG---WS 161 (542)
T ss_pred EEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc---cCcceEEEecCccc-c--------ccccc---cc
Confidence 9999999999999999999999999999987766655433221 11234444443211 0 00000 00
Q ss_pred hhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHH
Q 044926 170 YESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP 249 (569)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~ 249 (569)
..++.... .........++++++++|||||||.||+|.++|+++..........+++..++++++..|++|..++...
T Consensus 162 ~~~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~ 239 (542)
T PRK06155 162 TAPLPPLD--APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAF 239 (542)
T ss_pred hhhhcccC--CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHH
Confidence 00010000 0111123456899999999999999999999999998887777778889999999999999999999888
Q ss_pred HHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......... +++.++.+| +++.+.+.++ .
T Consensus 240 ~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~--~l~~~~~g~--~~~~~~~~~~~~ 315 (542)
T PRK06155 240 FQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAH--RVRVALGPG--VPAALHAAFRER 315 (542)
T ss_pred HHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccC--ceEEEEEcC--CCHHHHHHHHHH
Confidence 8889999999998889999999999999999999999999999987655544444 788777555 5677777776 6
Q ss_pred cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC--
Q 044926 329 LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG-- 406 (569)
Q Consensus 329 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~-- 406 (569)
+++++++.||+||++.++..+.. ......+|.+.++. +++|+|+ .+.+++.| +.|||+++|+
T Consensus 316 ~~~~v~~~YG~tE~~~~~~~~~~------------~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gei~v~~~~~ 379 (542)
T PRK06155 316 FGVDLLDGYGSTETNFVIAVTHG------------SQRPGSMGRLAPGF-EARVVDE-HDQELPDG--EPGELLLRADEP 379 (542)
T ss_pred cCCCEEeeecccccCccccCCCC------------CCCCCCcCccCCCc-eEEEECC-CCCCCCCC--CceEEEEecCCc
Confidence 79999999999999876553211 12335788888888 9999997 57888877 8999999998
Q ss_pred -cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCC
Q 044926 407 -CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485 (569)
Q Consensus 407 -~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 485 (569)
.++.||+++++.+...|. ++||+|||+|++++||++++.||.+|+|+++|.+++|.+||++|.++|+|.+++|++.++
T Consensus 380 ~~~~~GY~~~~~~~~~~~~-~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~ 458 (542)
T PRK06155 380 FAFATGYFGMPEKTVEAWR-NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPS 458 (542)
T ss_pred cccchhhcCCHHHHHHhhc-CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecc
Confidence 699999999988888776 899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 486 EFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 486 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+..++.+.++++..++.. .+..+++++++++++.+++|..++++++||+|++||++|++|++++...
T Consensus 459 ~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~~ 525 (542)
T PRK06155 459 ELGEDEVMAAVVLRDGTA--LEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVTA 525 (542)
T ss_pred cccCceEEEEEEECCCCC--CCHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccCC
Confidence 877788888888876655 6789999999999999999999999999999999999999999877543
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=554.67 Aligned_cols=519 Identities=34% Similarity=0.544 Sum_probs=446.4
Q ss_pred CCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 9 ANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
|.+.+.|+.++|.++++.+|+++|+.+.++.+||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|
T Consensus 1 ~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G 80 (521)
T PRK06187 1 MQDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIG 80 (521)
T ss_pred CCcccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccc
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (569)
++++++++..+.+++.++++.++++.++++.+..+.+.+....... .+.++.+++.... .......
T Consensus 81 ~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----------~~~~~~~ 146 (521)
T PRK06187 81 AVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPT---VRTVIVEGDGPAA-----------PLAPEVG 146 (521)
T ss_pred eEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCC---ccEEEEecCcccc-----------ccccccc
Confidence 9999999999999999999999999999999887777666554432 3455555443211 0001134
Q ss_pred hhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH
Q 044926 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF 248 (569)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~ 248 (569)
.+.+++........ ......+++++++|||||||.||+|.++|+++..........++++.+|++++..|++|..++..
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 225 (521)
T PRK06187 147 EYEELLAAASDTFD-FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL 225 (521)
T ss_pred cHHHHhhcCCccCC-CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH
Confidence 55555544332222 22355678999999999999999999999999988888888889999999999999999999988
Q ss_pred HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh
Q 044926 249 PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES 328 (569)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~ 328 (569)
.+.++..|+++++.+..++..+++.++++++|.++++|+++..+.+........+. ++|.+++||+.++..+++.+.+
T Consensus 226 ~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~--~l~~v~~~Ge~l~~~~~~~~~~ 303 (521)
T PRK06187 226 PYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFS--SLRLVIYGGAALPPALLREFKE 303 (521)
T ss_pred HHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcc--hhhEEEEcCcCCCHHHHHHHHH
Confidence 77889999999998888999999999999999999999999999998766444555 9999999999999999999884
Q ss_pred -cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 -LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 -~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+++++++.||+||+++++..+........ ........|.|.++. .++|+|+ ++.+++.+.++.|||+++|+.
T Consensus 304 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~-----~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~~~g~~Gel~v~~~~ 376 (521)
T PRK06187 304 KFGIDLVQGYGMTETSPVVSVLPPEDQLPG-----QWTKRRSAGRPLPGV-EARIVDD-DGDELPPDGGEVGEIIVRGPW 376 (521)
T ss_pred HhCcchheeeccCccCcccccCCccccccc-----ccccCCccccccCCe-EEEEECC-CCCCCCCCCCCeeEEEEECcc
Confidence 59999999999999876665432211000 012346788899988 9999997 567777733489999999999
Q ss_pred ccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCC
Q 044926 408 IMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEF 487 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 487 (569)
++.||+++++.+...|. ++||+|||+++++++|.+++.||.+|+++.+|.++++.+||+.|.++++|.+++|++.+++.
T Consensus 377 ~~~~y~~~~~~~~~~~~-~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~ 455 (521)
T PRK06187 377 LMQGYWNRPEATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEK 455 (521)
T ss_pred hhhhhcCCHHHHHHHhh-CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCC
Confidence 99999999988888887 77999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 488 WGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 488 ~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
.++.++++++..++.. .+.++++++++++++.+++|..++++++||+|++||++|+.|+++|.+.
T Consensus 456 ~~~~~~~~v~~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~ 520 (521)
T PRK06187 456 WGERPVAVVVLKPGAT--LDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG 520 (521)
T ss_pred cCceEEEEEEECCCCC--CCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence 8888999999877655 6788999999999999999999999999999999999999999999864
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=554.86 Aligned_cols=536 Identities=54% Similarity=0.950 Sum_probs=438.0
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Q 044926 4 LKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 4 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
+.+-+...-++|+.++|++.++.+|+++|+++.+..+||+||.++++++|..|.+.|+++||+|+++++|+++++++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA 87 (545)
T PRK08162 8 LDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFG 87 (545)
T ss_pred cCccccccccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence 33444455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|++++|++++.+.+++.++++.++++.++++.+..+.+.+....... ...+.+....... .. ..
T Consensus 88 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~-~~ 155 (545)
T PRK08162 88 VPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPG----PKPLVIDVDDPEY-------PG-GR 155 (545)
T ss_pred HHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCC----CceEEEecCcccc-------cc-CC
Confidence 999999999999999999999999999999999999887766655433321 2233333221100 00 00
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhh
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHS 243 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~ 243 (569)
......+++++....+......+.+.+++++++|||||||.||+|.++|+++...+......+.+..++++++.+|++|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~ 235 (545)
T PRK08162 156 FIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHC 235 (545)
T ss_pred CcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhh
Confidence 00123455555443322222223345689999999999999999999999987766666666778888999999999999
Q ss_pred hhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 244 NGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 244 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
.++...+...+.|++.++...+++..+++.++++++|++.++|.++..|.+........+. +.+.++++|+.+++...
T Consensus 236 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~ 313 (545)
T PRK08162 236 NGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGID--HPVHAMVAGAAPPAAVI 313 (545)
T ss_pred hhHHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCc--cceEEEECCCCCCHHHH
Confidence 9988777677788888888889999999999999999999999999999987544333333 56778899999999999
Q ss_pred HHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEE
Q 044926 324 LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403 (569)
Q Consensus 324 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 403 (569)
+.++++++++++.||+||+++.+..+.....+..++...........|.+.+....+.|+|++++.+++.++++.|||++
T Consensus 314 ~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v 393 (545)
T PRK08162 314 AKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMF 393 (545)
T ss_pred HHHHHhCCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEE
Confidence 98887799999999999997766665444444333322222233456666665557889998788887764435799999
Q ss_pred ecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEec
Q 044926 404 RGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483 (569)
Q Consensus 404 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 483 (569)
+|+.++.||+++++.+...|. ++||+|||+|++++||.+++.||.+|+++.+|++|++.+||.+|.++|+|.+++|++.
T Consensus 394 ~g~~~~~gY~~~~~~~~~~~~-~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~ 472 (545)
T PRK08162 394 RGNIVMKGYLKNPKATEEAFA-GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAK 472 (545)
T ss_pred ecCcchhhhcCChhhhHHHhh-CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEee
Confidence 999999999999999998887 7899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 484 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
+++..++.+++++++.++.. .+.+++++++++.++.+++|..+++ .+||+|++||++|+.|++++.++...
T Consensus 473 ~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l~~~ 543 (545)
T PRK08162 473 PDPKWGEVPCAFVELKDGAS--ATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSLKAI 543 (545)
T ss_pred eccccCceEEEEEEeCCCCC--CCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhhhhh
Confidence 88877888999998877654 5788999999999999999998875 68999999999999999998887643
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=554.49 Aligned_cols=515 Identities=28% Similarity=0.409 Sum_probs=426.5
Q ss_pred CCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 9 ANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
+...++|+.++|.++++.+|+++|+++.++.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 2 ~~~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 81 (528)
T PRK07470 2 MSRRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLG 81 (528)
T ss_pred CcccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccc
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (569)
++++++++..+.+++.++++.++++.++++.+..+........... ...++.+..... ..
T Consensus 82 ~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----------------~~ 141 (528)
T PRK07470 82 AVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPD---LTHVVAIGGARA-----------------GL 141 (528)
T ss_pred eEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCc---CceEEEeCCCcc-----------------cc
Confidence 9999999999999999999999999999998766555444332211 233444332110 13
Q ss_pred hhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc--CCCCCCCEEEEecCchhhhhh
Q 044926 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD--WSVPTQPVYLWTLPMFHSNGW 246 (569)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~--~~~~~~d~~~~~~pl~~~~g~ 246 (569)
.+.+++..............++++++++|||||||.||+|.++|.++...+...... .+....|+++...|++|..++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~ 221 (528)
T PRK07470 142 DYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGI 221 (528)
T ss_pred cHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHH
Confidence 344444332211111223456899999999999999999999999986554432222 256788999999999999998
Q ss_pred hHHHHHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHH
Q 044926 247 CFPWAMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLL 324 (569)
Q Consensus 247 ~~~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~ 324 (569)
...+ .++.|++.++++ .+++..+++.|+++++|++.++|+++..+++........+. ++|.+++||+++++....
T Consensus 222 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gG~~l~~~~~~ 298 (528)
T PRK07470 222 HQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHS--SLRYVIYAGAPMYRADQK 298 (528)
T ss_pred HHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCc--ceEEEEEcCCCCCHHHHH
Confidence 6544 567777777664 47899999999999999999999999999887654444454 999999999999999998
Q ss_pred HHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEE
Q 044926 325 RTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403 (569)
Q Consensus 325 ~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 403 (569)
++. .++..+++.||+||+++.+..+..... ... ........++|.|.+++ .++++|+ ++.+++.| +.|||++
T Consensus 299 ~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~--~~~-~~~~~~~~~~G~~~~g~-~~~i~d~-~~~~~~~g--~~Gel~i 371 (528)
T PRK07470 299 RALAKLGKVLVQYFGLGEVTGNITVLPPALH--DAE-DGPDARIGTCGFERTGM-EVQIQDD-EGRELPPG--ETGEICV 371 (528)
T ss_pred HHHHHhCcHHHHhCCCcccCCceeecchhhc--ccc-ccccceeeccCcccCCc-EEEEECC-CCCCCCCC--CceEEEE
Confidence 876 578899999999999876654321100 000 00122345789999998 9999997 67788877 8999999
Q ss_pred ecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEec
Q 044926 404 RGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483 (569)
Q Consensus 404 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 483 (569)
+|+.++.||+++++.+...|. ++||+|||+|++++||++++.||.+|+|+++|++++|.+||..|.++++|.+++|++.
T Consensus 372 ~~~~~~~gy~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~ 450 (528)
T PRK07470 372 IGPAVFAGYYNNPEANAKAFR-DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGV 450 (528)
T ss_pred eCCccchhhcCCHHHHHhhhc-CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEec
Confidence 999999999999998888776 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 484 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
+++..|+..+++++..++.. .+.++++++++++|+++++|..++++++||+|++||++|+.|++++++...
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 521 (528)
T PRK07470 451 PDPVWGEVGVAVCVARDGAP--VDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERGL 521 (528)
T ss_pred cCcccCceeEEEEEECCCCC--CCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhccc
Confidence 99887888888888776644 678899999999999999999999999999999999999999999888764
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=570.56 Aligned_cols=516 Identities=18% Similarity=0.209 Sum_probs=394.2
Q ss_pred CchHHHHHHHHHHcCCCCeEEeC----C-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 14 LTPLVFLERAATVYGDSPSIIYN----N-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
.|+.++|+++++.+||++|+.+. + +.+||+||.++++++|.+|.+.|+++||+|+|+++|+++|++++|||
T Consensus 45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999842 1 35899999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+++|+++||+++.++.+++.+++++++++++|++.+....+........ ..++.++.++....... . .....+
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~--~~l~~vi~~~~~~~~~~---~--~~~~~~ 197 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNST--EYMKTVVSFGGVSREQK---E--EAETFG 197 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhccccc--ccceEEEEeCCCChHHh---h--hhhhcC
Confidence 9999999999999999999999999999999998765443322211110 01344555543210000 0 000001
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccC-----CCCCCCEEEEecC
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW-----SVPTQPVYLWTLP 239 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~p 239 (569)
.....+++++..............++|+++|+|||||||.||||.+||+++...+......+ ++..+|++++.+|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lP 277 (666)
T PLN02614 198 LVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLP 277 (666)
T ss_pred cEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEecc
Confidence 11245666554332211111224578999999999999999999999999988776554433 5788999999999
Q ss_pred chhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCC----C----------------
Q 044926 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP----D---------------- 299 (569)
Q Consensus 240 l~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~----~---------------- 299 (569)
++|.+++...+..+..|+++++.+ .++..+++.|++++||+++++|+++..+.+.... .
T Consensus 278 l~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 356 (666)
T PLN02614 278 LAHIFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKF 356 (666)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999876666677888877764 6899999999999999999999999987642100 0
Q ss_pred -----------CC-------------CCCcCCCceEEEeCCCCcHHHHHHHHhc-CCeeeecccccccccceeecccccc
Q 044926 300 -----------KK-------------PLKLAKPVHLVTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRN 354 (569)
Q Consensus 300 -----------~~-------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~ 354 (569)
.. .+ .+++|.+++||+++++.+.+.++.+ +++++++||+||+++..+.... .
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-g~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~- 433 (666)
T PLN02614 357 GNMKKGQSHVEASPLCDKLVFNKVKQGL-GGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLP-D- 433 (666)
T ss_pred HHHHcCCCCcccchHHHHHHHHHHHHHh-CCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeecc-c-
Confidence 00 00 1489999999999998765544555 5899999999998754432211 0
Q ss_pred cccCcHHHHhhhhcccCcccccceeeEEeCCCC--CcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeec
Q 044926 355 WNLLPAAEKAKLKARQGVKTTALTEVDVLDPKS--GVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTG 432 (569)
Q Consensus 355 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~--~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 432 (569)
......++|.|.+++ +++|+|.++ +..++.| +.|||+|+||+++.|||++|+.+...|. +|||+||
T Consensus 434 --------~~~~~gsvG~p~pg~-evki~d~~~~~~~~~~~g--~~GEl~vrGp~v~~GY~~~pe~T~~~f~-dGw~~TG 501 (666)
T PLN02614 434 --------ELDMLGTVGPPVPNV-DIRLESVPEMEYDALAST--PRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHTG 501 (666)
T ss_pred --------cCCcCCcccCcCCce-EEEEeeecccCcccCCCC--CCceEEEcCCcccccccCCHHHhhhhhc-cCCcccc
Confidence 011245799999998 999998433 3556655 8899999999999999999999999996 8999999
Q ss_pred ceEEEecCCcEEEeccCCCeEE-eCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCC---------
Q 044926 433 DVGVMHSDGYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGS--------- 502 (569)
Q Consensus 433 D~~~~~~dg~l~~~GR~~~~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~--------- 502 (569)
|+|++|+||+|++.||.+|+|| .+|++|+|.+||++|.+||.|.+++|++..+. ..++++|++....
T Consensus 502 Dlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~~~~~~~~~~~~ 578 (666)
T PLN02614 502 DVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQQILERWAAENG 578 (666)
T ss_pred eEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCHHHHHHHHHhcC
Confidence 9999999999999999999999 57999999999999999999999999998642 3477887765321
Q ss_pred -CC--------CCCHHHHHHHH-----hccCCCCccccEEEEec-cc-----CCCCCCcccHHHHHHHHHhcC
Q 044926 503 -KS--------KPTEKEMIEYC-----RGRLPHYMVPKTVVFMD-EL-----PKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 503 -~~--------~~~~~~l~~~l-----~~~l~~~~~p~~~~~~~-~i-----P~t~~GKi~r~~l~~~~~~~~ 555 (569)
.. ....+.+.+.+ ++.|+.+.+++.|.++. ++ -+|+++|+.|..+.+.|++.-
T Consensus 579 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i 651 (666)
T PLN02614 579 VSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI 651 (666)
T ss_pred CCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHH
Confidence 00 00112233333 35699999999998875 33 389999999999999888754
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=555.18 Aligned_cols=511 Identities=26% Similarity=0.388 Sum_probs=422.7
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
...|+.++|.+++..+|+++|+++. ++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 26 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 105 (546)
T PLN02330 26 DKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGG 105 (546)
T ss_pred CCCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCc
Confidence 4578999999999999999999874 57899999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|+++..+.+++.++++.++++++|+++.....+... ...++.+...... ....
T Consensus 106 ~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~i~~~~~~~~---------------~~~~ 161 (546)
T PLN02330 106 VFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL---------GLPVIVLGEEKIE---------------GAVN 161 (546)
T ss_pred EeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc---------CCcEEEecCCCCC---------------Cccc
Confidence 999999999999999999999999999998776654321 1223333322100 0133
Q ss_pred hhHhhhcCCCCc--ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC--CCCCCEEEEecCchhhhh
Q 044926 170 YESLVAKGDPEF--EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS--VPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 170 ~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~--~~~~d~~~~~~pl~~~~g 245 (569)
+.++++...... .......++++++++|||||||.||+|.++|+++..+.......++ ....++++...|++|.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g 241 (546)
T PLN02330 162 WKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYG 241 (546)
T ss_pred HHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHH
Confidence 444444322111 1112245679999999999999999999999998776543221121 224567899999999998
Q ss_pred hhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHH
Q 044926 246 WCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLL 324 (569)
Q Consensus 246 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~ 324 (569)
+.. .+.++..|+++++.+.+++..+++.++++++|.+.++|+++..+.+........+...++|.+++||+++++.+++
T Consensus 242 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~ 321 (546)
T PLN02330 242 ITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLT 321 (546)
T ss_pred HHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHH
Confidence 764 5667788999888888999999999999999999999999999988654333333322578999999999999999
Q ss_pred HHH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEE
Q 044926 325 RTE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIV 402 (569)
Q Consensus 325 ~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 402 (569)
++. .+ ++++++.||+||++.+...+..... ........++|.|.+++ +++|+|++++..++.| +.|||+
T Consensus 322 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~~~vG~~~~~~-~v~i~d~~~~~~~p~g--~~Gel~ 392 (546)
T PLN02330 322 AFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK------GHGIAKKNSVGFILPNL-EVKFIDPDTGRSLPKN--TPGELC 392 (546)
T ss_pred HHHHHcCCCeEEecccccccccceecCCCccc------cccccccCccccccCCc-EEEEEeCCCCccCCCC--CceEEE
Confidence 998 55 8999999999999765543321110 00111235789999998 9999998888888888 899999
Q ss_pred EecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 403 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
++|+.++.||++++..+...++.++||+|||+|++++||++++.||.+|+|+.+|++|++.+||.+|.+++.|.+++|++
T Consensus 393 v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 472 (546)
T PLN02330 393 VRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVP 472 (546)
T ss_pred EecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEe
Confidence 99999999999999988888877899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
.+++..|+.++++|+..++.. .+.++++++++++++.++.|..++++++||+|++||++|++|++++.....+
T Consensus 473 ~~~~~~g~~~~a~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~~~~ 545 (546)
T PLN02330 473 LPDEEAGEIPAACVVINPKAK--ESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSINKA 545 (546)
T ss_pred ccccccCceeEEEEEECCCCC--CCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhhhcC
Confidence 999888888999998876654 5678999999999999999999999999999999999999999999877543
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=557.72 Aligned_cols=521 Identities=27% Similarity=0.372 Sum_probs=427.1
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
.++|+.++|+++++.+|+++|+++.++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 30 ~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 109 (573)
T PRK05605 30 GDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV 109 (573)
T ss_pred CcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccc-ccc---------CC--CC
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAV-SSQ---------SH--HP 159 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~--~~ 159 (569)
+|++|.++.+++.+++.+++++++|+++.....+.+...... ...++.+........ ... .. ..
T Consensus 110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (573)
T PRK05605 110 VEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTP----LETIVSVNMIAAMPLLQRLALRLPIPALRKARAA 185 (573)
T ss_pred eecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccc----cceeEeeecccccccccccccccccccccccccc
Confidence 999999999999999999999999998876665544432221 233433321110000 000 00 00
Q ss_pred CCCCCcccchhhHhhhcCCCCc---ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC-C-CCCCEE
Q 044926 160 NISDDQFFSTYESLVAKGDPEF---EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS-V-PTQPVY 234 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~-~-~~~d~~ 234 (569)
..........|.++........ ........+++++++|||||||.||+|.++|+++...+......+. + ...+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 265 (573)
T PRK05605 186 LTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERV 265 (573)
T ss_pred cccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEE
Confidence 0000111234555444322110 1112245789999999999999999999999999876654433222 2 347899
Q ss_pred EEecCchhhhhhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 235 LWTLPMFHSNGWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 235 ~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
++..|++|.+|+.. .+.+++.|+++++.+..++..+++.++++++|++.++|.++..|.+........+. ++|.+++
T Consensus 266 ~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~i~~ 343 (573)
T PRK05605 266 LAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLS--GVRNAFS 343 (573)
T ss_pred EEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCch--hccEEEE
Confidence 99999999998865 45567889998888888999999999999999999999999999987655555555 9999999
Q ss_pred eCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCC-Cccc
Q 044926 314 AGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKS-GVSA 391 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~-~~~~ 391 (569)
||+.+++.+.+.+. .++.++++.||+||+++++..+.... ......+|.+.++. .++|+|+++ +..+
T Consensus 344 gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~ 412 (573)
T PRK05605 344 GAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSD----------DRRPGYVGVPFPDT-EVRIVDPEDPDETM 412 (573)
T ss_pred CCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCccc----------CCcCCccccCCCCC-EEEEEcCCCCCccC
Confidence 99999999999887 46899999999999987765443211 11234789999998 999999876 6777
Q ss_pred CCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHc
Q 044926 392 KRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYS 471 (569)
Q Consensus 392 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~ 471 (569)
+.+ +.|||+++|+.++.||++++..+...|. ++||+|||+|+++++|++++.||.+|+++.+|++|+|.+||+++.+
T Consensus 413 ~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~ 489 (573)
T PRK05605 413 PDG--EEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLRE 489 (573)
T ss_pred CCC--CeeEEEEecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHh
Confidence 776 8999999999999999999999988887 6799999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 472 NPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 472 ~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
++.|.+++|++.+++..++.+++++++.++.. .+.++|+++++++++.+++|..++++++||+|.+||++|++|++++
T Consensus 490 ~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~ 567 (573)
T PRK05605 490 HPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA--LDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREEL 567 (573)
T ss_pred CcccceEEEEeeecccCCeEEEEEEEECCCCC--CCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHH
Confidence 99999999999998888888999998887654 6789999999999999999999999999999999999999999988
Q ss_pred Hhc
Q 044926 552 ENM 554 (569)
Q Consensus 552 ~~~ 554 (569)
.+.
T Consensus 568 ~~~ 570 (573)
T PRK05605 568 LEK 570 (573)
T ss_pred HHH
Confidence 764
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=559.42 Aligned_cols=507 Identities=24% Similarity=0.369 Sum_probs=418.9
Q ss_pred CchH-HHHHHHHH-HcCCCCeEEeCC----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q 044926 14 LTPL-VFLERAAT-VYGDSPSIIYNN----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFA 87 (569)
Q Consensus 14 ~tl~-~~l~~~a~-~~p~~~al~~~~----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 87 (569)
+++. ++++++++ .+|+++|+.+.+ +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~ 121 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN 121 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 3444 68888877 479999998753 68999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCccc
Q 044926 88 AAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFF 167 (569)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (569)
|++++|+++.++.+++.++++.++++++|++......... ...+ ..+.++.++..... ....
T Consensus 122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-------------~~~~ 183 (570)
T PRK04319 122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLP---SLKHVLLVGEDVEE-------------GPGT 183 (570)
T ss_pred CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCC---CceEEEEECCCcCC-------------CcCc
Confidence 9999999999999999999999999999998765443221 1111 12344444322110 0012
Q ss_pred chhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhh
Q 044926 168 STYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWC 247 (569)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~ 247 (569)
..+.+++....... ...+..++++++++|||||||.||+|.++|++++.........+++.++|++++..|++|.+|..
T Consensus 184 ~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~ 262 (570)
T PRK04319 184 LDFNALMEQASDEF-DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTS 262 (570)
T ss_pred cCHHHHHhhcCCcC-CccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCch
Confidence 34555544332221 11234567999999999999999999999999998887777788899999999999999998875
Q ss_pred H-HHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 248 F-PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 248 ~-~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
. .+.+++.|+++++.. .+++..+++.|+++++|+++++|+++..+.+..........++++|.+++||+++++++.++
T Consensus 263 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~ 342 (570)
T PRK04319 263 YGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRW 342 (570)
T ss_pred HHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHH
Confidence 5 667788899888875 58999999999999999999999999999876533222233449999999999999999998
Q ss_pred HH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEe
Q 044926 326 TE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404 (569)
Q Consensus 326 ~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 404 (569)
++ .++.++++.||+||+++.+...... ......++|.|.++. +++|+|+ ++..++.| +.|||+++
T Consensus 343 ~~~~~g~~i~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~p~~g~-~~~i~d~-~~~~~~~g--~~Gel~i~ 408 (570)
T PRK04319 343 GMKVFGLPIHDNWWMTETGGIMIANYPA----------MDIKPGSMGKPLPGI-EAAIVDD-QGNELPPN--RMGNLAIK 408 (570)
T ss_pred HHHHhCCCeEeceeecccCCEEEecCCC----------CCCCCCcCcCCCCCC-EEEEECC-CCCCCCCC--CceEEEEc
Confidence 88 5799999999999998765432111 011235789999998 9999997 66677776 89999999
Q ss_pred c--CcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 405 G--GCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 405 ~--~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
| +.++.||+++++.+...|. ++||+|||+|+++++|++++.||.+|+|+.+|++|+|.+||+.|.++|.|.+++|++
T Consensus 409 ~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g 487 (570)
T PRK04319 409 KGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIG 487 (570)
T ss_pred CCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceec
Confidence 7 8999999999999988888 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCC-CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 483 RPDEFWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
.+++..|+.++++++..++... +...++++++++++++.|++|..++++++||+|++||++|+.|+++..+.
T Consensus 488 ~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 560 (570)
T PRK04319 488 KPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELGL 560 (570)
T ss_pred ccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhCC
Confidence 9998889999999998775431 12236899999999999999999999999999999999999999987554
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=554.95 Aligned_cols=515 Identities=21% Similarity=0.246 Sum_probs=407.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHcCCCCeEEeCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q 044926 5 KPSPANSTPLTPLVFLERAATVYGDSPSIIYNN--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82 (569)
Q Consensus 5 ~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 82 (569)
+.-++..-+.|+.+.|.++|+++|+++|+++.+ +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|
T Consensus 5 ~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~l 84 (540)
T PRK05857 5 KFQAMPQLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL 84 (540)
T ss_pred cccccccCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHH
Confidence 445677788899999999999999999998643 689999999999999999999999999999999999999999999
Q ss_pred HhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCC
Q 044926 83 AVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNIS 162 (569)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (569)
||+++|++++|+++.++.+++.++++.++++++|+++.............. ...++.++......
T Consensus 85 A~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------- 149 (540)
T PRK05857 85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALH----SIPVIAVDIAAVTR----------- 149 (540)
T ss_pred HHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccccccc----ccceeEeecccccc-----------
Confidence 999999999999999999999999999999999998765322111111000 11222222111000
Q ss_pred CCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhh----ccCCCCCCCEEEEec
Q 044926 163 DDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL----SDWSVPTQPVYLWTL 238 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~----~~~~~~~~d~~~~~~ 238 (569)
.+......... ........+++++++|||||||.||+|.++|+++..+..... ..+....++++++.+
T Consensus 150 ------~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (540)
T PRK05857 150 ------ESEHSLDAASL--AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPL 221 (540)
T ss_pred ------ccccccccccc--ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecC
Confidence 00000000000 001224567999999999999999999999999976654322 123456778999999
Q ss_pred CchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCC
Q 044926 239 PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPP 318 (569)
Q Consensus 239 pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l 318 (569)
|++|..++...+.+++.|+++++ ...++..+++.|+++++|.++++|.++..+.+........+. ++|.+++||+++
T Consensus 222 p~~h~~~l~~~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gG~~~ 298 (540)
T PRK05857 222 PATHIGGLWWILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVP--SLRLVGYGGSRA 298 (540)
T ss_pred CccccchHHHHHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCc--cceEEEEcCccC
Confidence 99999999888888888988765 556889999999999999999999999999887654444555 999999999999
Q ss_pred cHHHHHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCC---CC
Q 044926 319 PAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKR---DG 395 (569)
Q Consensus 319 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~---~~ 395 (569)
+....+.+..+++++++.||+||++.....+..... ........++|.+.+++ +++|+|++...+.+. ..
T Consensus 299 ~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~g~-~v~i~d~~~~~~~~~~~~~~ 371 (540)
T PRK05857 299 IAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDG------SIVKIEAGAVGRPYPGV-DVYLAATDGIGPTAPGAGPS 371 (540)
T ss_pred CchhHHHHHHhCCeeecccCCCcCCceeeecccccc------cccccccCCcCcccCCc-EEEEECccccCccccccCCC
Confidence 888876666779999999999999754443221110 00011235789999998 999999854433332 12
Q ss_pred CceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCc
Q 044926 396 STLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAV 475 (569)
Q Consensus 396 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i 475 (569)
++.|||+++|++++.||+++++.+...|. +|||+|||+|+++++|++++.||.+|+||++|.+|+|.+||.+|..||+|
T Consensus 372 ~~~Gel~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V 450 (540)
T PRK05857 372 ASFGTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGV 450 (540)
T ss_pred CCcceEEEeCcchhhhhhCCccchhhhcC-CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCe
Confidence 37899999999999999999999888887 89999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCCCCceeEEEEEecCCCCCCCCH----HHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 476 NEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE----KEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 476 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
.+++|++.++...++.++++++..+.... ... +.+.+.++++++.+++|..++++++||+|++||++|++|++.+
T Consensus 451 ~~~~v~~~~~~~~~~~~~~~vv~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~ 529 (540)
T PRK05857 451 REAACYEIPDEEFGALVGLAVVASAELDE-SAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAA 529 (540)
T ss_pred eEEEEEecCccccccceEEEEEeCCCCCh-hhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhh
Confidence 99999999988777777777776543221 112 3445566778999999999999999999999999999999988
Q ss_pred Hhc
Q 044926 552 ENM 554 (569)
Q Consensus 552 ~~~ 554 (569)
...
T Consensus 530 ~~~ 532 (540)
T PRK05857 530 TAD 532 (540)
T ss_pred hhc
Confidence 753
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-67 Score=554.50 Aligned_cols=543 Identities=51% Similarity=0.902 Sum_probs=429.5
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
.++...++++..+|.+.+..+|+++|+++.++.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~ 92 (567)
T PLN02479 13 NAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPM 92 (567)
T ss_pred ccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 34455678899999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred ccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCC----CCCCCCEEEEeCCCcccccccCCCCCCC
Q 044926 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPP----DLKPPPLVLISDDDDAAVSSQSHHPNIS 162 (569)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (569)
+|++++|+++.++.+++.++++.++++.+|+++...+...+....... ....+.++.++.......... ...
T Consensus 93 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 168 (567)
T PLN02479 93 AGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQ---YAL- 168 (567)
T ss_pred CCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccc---ccc-
Confidence 999999999999999999999999999999998776655444332111 001223444433211000000 000
Q ss_pred CCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchh
Q 044926 163 DDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFH 242 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~ 242 (569)
......+.+++....+..........+++++++|||||||.||+|.++|++++..+......+++..++++++..|++|
T Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h 247 (567)
T PLN02479 169 -GKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFH 247 (567)
T ss_pred -ccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhh
Confidence 0112345665554332221112233457788999999999999999999998776665556678889999999999999
Q ss_pred hhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHH
Q 044926 243 SNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 243 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
.+++...+...+.++..+++..+++..+++.++++++|++.++|.++..|.+....... ..+.+++.++++|+.+++.+
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-~~~~~l~~~~~~G~~~~~~~ 326 (567)
T PLN02479 248 CNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI-LPLPRVVHVMTAGAAPPPSV 326 (567)
T ss_pred hhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc-ccccceeEEEEcCCCCCHHH
Confidence 99987766555556666667788999999999999999999999999999876432221 12338899999999999999
Q ss_pred HHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEE
Q 044926 323 LLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIV 402 (569)
Q Consensus 323 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 402 (569)
.+++++.++++++.||+||+++.+..+.....|...+...........|.+.++...++|+|++++.+++.++++.|||+
T Consensus 327 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~ 406 (567)
T PLN02479 327 LFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIV 406 (567)
T ss_pred HHHHHhcCCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEE
Confidence 99988778999999999999765554432222222211111122235677777764488999878887776544689999
Q ss_pred EecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 403 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
++|++++.||+++++.+...|. ++||+|||+|+++++|++++.||.+|+|+.+|++|++.+||.+|.++|.|.+++|++
T Consensus 407 v~g~~~~~GY~~~~~~t~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~ 485 (567)
T PLN02479 407 MRGNMVMKGYLKNPKANEEAFA-NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVA 485 (567)
T ss_pred EeccchhhhhhcCcccccchhc-CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEe
Confidence 9999999999999999999887 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCC---CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 483 RPDEFWGETPCAFVSLKEGSKS---KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~---~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
.+++..++.+++++++.++... ....++++++++++++.++.|+.+++ .+||+|++||++|+.|++.+...+.+
T Consensus 486 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~~~~~ 562 (567)
T PLN02479 486 RPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKEMGPV 562 (567)
T ss_pred ccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHhhCCc
Confidence 9888778889999988765321 13457899999999999999998776 78999999999999999988875543
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=562.59 Aligned_cols=518 Identities=23% Similarity=0.277 Sum_probs=411.3
Q ss_pred hHHHHHHHHHHcCCCCeEEeC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 16 PLVFLERAATVYGDSPSIIYN------NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 16 l~~~l~~~a~~~p~~~al~~~------~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
..++|++++..+|+++|+++. .+.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 377888888889999999872 36899999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCC
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (569)
+++|++|.++.+++.+++++++++++|+++.. .+.+.++....... ...++++....... .
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~~~~~~~~~--------~ 204 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHK--PRHVLLVDRGLAPM--------A 204 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCC--CCEEEEEeCCCCCc--------C
Confidence 99999999999999999999999999997642 23344443322111 34555554321100 0
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHH-hhhhccCCCCCCCEEEEecC
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVA-VNTLSDWSVPTQPVYLWTLP 239 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~-~~~~~~~~~~~~d~~~~~~p 239 (569)
... .....+.++...............++++++++|||||||.||||.++|.+++... ......+++.++|++++..|
T Consensus 205 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 283 (629)
T PRK10524 205 RVA-GRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASD 283 (629)
T ss_pred ccc-CCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence 000 0012344444332211111122456899999999999999999999999875443 33444567889999999999
Q ss_pred chhhhhhhH-HHHHHHhCceEEEec----cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEe
Q 044926 240 MFHSNGWCF-PWAMAAVGGTNICIR----KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTA 314 (569)
Q Consensus 240 l~~~~g~~~-~~~~~~~g~~~~~~~----~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 314 (569)
+.|..+..+ .+.+++.|+++++.+ ..++..+++.++++++|++.++|+++..+.+..........+.++|.+++|
T Consensus 284 ~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~ 363 (629)
T PRK10524 284 IGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLA 363 (629)
T ss_pred CCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEe
Confidence 999888654 667788899988875 357899999999999999999999999988764322222233499999999
Q ss_pred CCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCC
Q 044926 315 GAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKR 393 (569)
Q Consensus 315 g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~ 393 (569)
|+++++++.+++. .+++++++.||+||++..+....... ........++|.|.++. +++|+|+++|.+++.
T Consensus 364 Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~~G~p~~g~-~~~i~d~~~g~~~~~ 435 (629)
T PRK10524 364 GEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGV-------EDRPTRLGSPGVPMYGY-NVKLLNEVTGEPCGP 435 (629)
T ss_pred CCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCc-------ccCcCCCCCcccCcCCc-eEEEEeCCCCCCCCC
Confidence 9999999999887 57999999999999975443321110 00112235789999998 999999878888887
Q ss_pred CCCceeEEEEecC---cccccccCCcccccccc---CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHH
Q 044926 394 DGSTLGEIVLRGG---CIMLGYLKDPIGTRKCM---TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVES 467 (569)
Q Consensus 394 ~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~ 467 (569)
| +.|||+++|| .++.||+++++.....+ ..++||+|||+|++++||++++.||.||+||++|++|+|.+||.
T Consensus 436 g--~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~ 513 (629)
T PRK10524 436 N--EKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEE 513 (629)
T ss_pred C--CcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHH
Confidence 7 8999999998 57889999887655432 13689999999999999999999999999999999999999999
Q ss_pred HHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCC------CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCc
Q 044926 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK------PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGK 541 (569)
Q Consensus 468 ~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GK 541 (569)
+|.++|+|.+++|++.+++..|+.++++|++.++.... ...++|+++++++++.+++|..++++++||+|++||
T Consensus 514 ~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGK 593 (629)
T PRK10524 514 SISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGK 593 (629)
T ss_pred HHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcc
Confidence 99999999999999999988889999999987653210 134689999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhc
Q 044926 542 IQKFVLREIAENM 554 (569)
Q Consensus 542 i~r~~l~~~~~~~ 554 (569)
++|+.|++.+.+.
T Consensus 594 i~R~~L~~~~~~~ 606 (629)
T PRK10524 594 LLRRAIQAIAEGR 606 (629)
T ss_pred hHHHHHHHHHcCC
Confidence 9999999987644
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-67 Score=550.48 Aligned_cols=499 Identities=24% Similarity=0.353 Sum_probs=416.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
|...|+.++|+++++.+|+++|+++.++.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 20 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 99 (527)
T TIGR02275 20 WQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIA 99 (527)
T ss_pred ccCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeE
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHH-----HHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA-----LVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
++++++..+.+++.++++.+++++++++..... ........... ...++.......
T Consensus 100 ~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------- 160 (527)
T TIGR02275 100 PVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPT---LRNIIVAGQTRV---------------- 160 (527)
T ss_pred EeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCc---ceEEEEecCCCC----------------
Confidence 999999999999999999999999999865421 11111111111 222333221100
Q ss_pred ccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhh
Q 044926 166 FFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g 245 (569)
.......++..... .......++++++++|||||||.||+|.++|.++..........+.++.+|++++.+|++|.++
T Consensus 161 -~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~ 238 (527)
T TIGR02275 161 -EAELFLWLESPAEP-VKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYP 238 (527)
T ss_pred -cchhhHHhhCcCcc-ccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhh
Confidence 00111111111111 1112345789999999999999999999999999988888777888999999999999999998
Q ss_pred hhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 246 WCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 246 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
+.. .+.++..|+++++.+.+++..+++.++++++|++.++|.++..+.+........+. ++|.+++||+++++.+.
T Consensus 239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~--~lr~~~~gG~~l~~~~~ 316 (527)
T TIGR02275 239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLS--SLKLLQVGGAKFSEAAA 316 (527)
T ss_pred hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCcc--ceEEEEEcCCCCCHHHH
Confidence 864 57778889998888888999999999999999999999999999887765555555 99999999999999999
Q ss_pred HHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEE
Q 044926 324 LRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIV 402 (569)
Q Consensus 324 ~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 402 (569)
+++. .+++++++.||+||++....... . .......++|.|.++...++|+|+ ++..++.| +.|||+
T Consensus 317 ~~~~~~~g~~~~~~YG~tE~~~~~~~~~-~---------~~~~~~~~~G~~~~~~~~v~i~d~-~g~~~~~g--~~Gei~ 383 (527)
T TIGR02275 317 RRVPAVFGCQLQQVFGMAEGLVNYTRLD-D---------PAEIIFTTQGRPMSPDDEVRVVDD-HGNPVAPG--ETGMLL 383 (527)
T ss_pred HHHHHHhCCeEEeeeccCccCccccCCC-C---------ccccccccCCCCCCCCceEEEECC-CCCCCCCC--CceEEE
Confidence 9987 57999999999999643322111 0 011123467888864448999997 67777777 899999
Q ss_pred EecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 403 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
++|++++.||+++++.+...+..++||+|||+|++++||++++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|++
T Consensus 384 v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~ 463 (527)
T TIGR02275 384 TRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVS 463 (527)
T ss_pred ecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEe
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
.+++..++.++++|+..++. .+.++|+++++++ ++.+++|..++++++||+|++||++|+.|+
T Consensus 464 ~~~~~~~~~~~a~vv~~~~~---~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 464 MPDELLGEKSCAFIVVRDPA---LKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred cCCcccccEEEEEEEECCCC---CCHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 99988888899998876553 5778999999985 999999999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=548.26 Aligned_cols=525 Identities=28% Similarity=0.478 Sum_probs=430.7
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEEe--CC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSIIY--NN--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~~--~~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
-+...|+|+.++|+++|+.+|++++++. .+ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la 83 (542)
T PRK06018 4 LMQDWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYG 83 (542)
T ss_pred hhhcCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Confidence 3566789999999999999999999984 23 6899999999999999999999999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|++++|++|..+.+++.++++.++++.++++.+..+.+.+....... ...++.+.+..... . ..
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------~-~~ 151 (542)
T PRK06018 84 IMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPS---VERYVVLTDAAHMP--------Q-TT 151 (542)
T ss_pred HHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCC---ccEEEEeccccccc--------c-cC
Confidence 999999999999999999999999999999999998887777665543321 34444443321100 0 00
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHH--HhhhhccCCCCCCCEEEEecCch
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIV--AVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~--~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
......+.+++........ .....++++++++|||||||.||+|.+||++++.. .......+++..+|+++...|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 230 (542)
T PRK06018 152 LKNAVAYEEWIAEADGDFA-WKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLF 230 (542)
T ss_pred ccccccHHHHhccCCcccC-cccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHH
Confidence 0012345555544332211 12345678999999999999999999999975322 22334456788999999999999
Q ss_pred hhhhhhHHHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcH
Q 044926 242 HSNGWCFPWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPA 320 (569)
Q Consensus 242 ~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~ 320 (569)
|.+++...+.++..|+++++.. .+++..+++.++++++|++.++|+++..+.+.......+++ ++|.++++|+++++
T Consensus 231 h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~--~lr~~~~~G~~l~~ 308 (542)
T PRK06018 231 HANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLP--HLKMVVCGGSAMPR 308 (542)
T ss_pred HHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcc--cceEEEEcCCCCCH
Confidence 9999887778888998887764 57899999999999999999999999999887655444444 89999999999999
Q ss_pred HHHHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeE
Q 044926 321 AVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400 (569)
Q Consensus 321 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 400 (569)
.+.++++++++++++.||+||++.++..+.....+..............+|.|.+++ +++|+|+ ++..++.+++..||
T Consensus 309 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~i~v~d~-~~~~~~~~~~~~Ge 386 (542)
T PRK06018 309 SMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV-EMKITDD-AGKELPWDGKTFGR 386 (542)
T ss_pred HHHHHHHHhCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCc-EEEEECC-CCCCCCCCCCceeE
Confidence 999999888999999999999987766554333322222222222235689899888 9999997 67777765446899
Q ss_pred EEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEE
Q 044926 401 IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480 (569)
Q Consensus 401 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 480 (569)
|+++|++++.||++.. ...+..++||+|||+++++++|++++.||.+|+|+.+|.++++.+||..+.++|+|.+++|
T Consensus 387 l~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v 463 (542)
T PRK06018 387 LKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAV 463 (542)
T ss_pred EEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEE
Confidence 9999999999999842 2334458999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 481 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
++.+++.+++.+.++|+..++.. .+.++++++++++++.+++|..++++++||+|++||++|++|+++|.+.
T Consensus 464 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~ 535 (542)
T PRK06018 464 IGVYHPKWDERPLLIVQLKPGET--ATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDY 535 (542)
T ss_pred EeccCCCcCceeEEEEEeCCCCC--CCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhcc
Confidence 99999888888888888877654 6778999999999999999999999999999999999999999999874
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-67 Score=550.07 Aligned_cols=512 Identities=30% Similarity=0.433 Sum_probs=434.5
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
.....|+.++|.++++.+|+++|+++.++.+||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+++|+
T Consensus 7 ~~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~ 86 (523)
T PRK08316 7 RARRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGA 86 (523)
T ss_pred cccCCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|+++..+.+++.++++.+++++++++.+....+.+....... ..+........ .........
T Consensus 87 ~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----------~~~~~~~~~ 151 (523)
T PRK08316 87 VHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV----DTLILSLVLGG-----------REAPGGWLD 151 (523)
T ss_pred EEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc----cceeeeecccc-----------cccccchhh
Confidence 999999999999999999999999999998877766554433221 11111111000 000011234
Q ss_pred hhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHH
Q 044926 170 YESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP 249 (569)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~ 249 (569)
+.++....... ........+++++++|||||||.||+|.++|++++.........+++..+|++++.+|++|..++...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~ 230 (523)
T PRK08316 152 FADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVF 230 (523)
T ss_pred HHHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHH
Confidence 44444332221 12233567899999999999999999999999999888877778889999999999999999998664
Q ss_pred -HHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh
Q 044926 250 -WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES 328 (569)
Q Consensus 250 -~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~ 328 (569)
+..+..|+++++.+..++..+++.++++++|++.++|.++..+.+........+. ++|.+++||+.++..+.+.+++
T Consensus 231 ~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~l~~~~~gg~~~~~~~~~~~~~ 308 (523)
T PRK08316 231 LGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLS--SLRKGYYGASIMPVEVLKELRE 308 (523)
T ss_pred HHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcc--cceEEEEcCCcCCHHHHHHHHH
Confidence 4457789999888888999999999999999999999999999987655544555 9999999999999999999884
Q ss_pred -c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 329 -L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 329 -~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
+ ++++++.||+||++.++..+... .......++|.+.++. +++|+|+ ++..++.| +.|||+++|+
T Consensus 309 ~~~~~~~~~~YG~tE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g--~~Gei~v~~~ 375 (523)
T PRK08316 309 RLPGLRFYNCYGQTEIAPLATVLGPE---------EHLRRPGSAGRPVLNV-ETRVVDD-DGNDVAPG--EVGEIVHRSP 375 (523)
T ss_pred HcCCCceeeeecccccCccccccCcc---------ccccccCCcccCCCCc-EEEEEcC-CCCCCCCC--CcceEEEECC
Confidence 4 78999999999998766553211 1112345789999998 9999996 67888877 8999999999
Q ss_pred cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCC
Q 044926 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDE 486 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 486 (569)
+++.||+++++.+...|. ++||+|||+|++++||.+++.||.+|+|+.+|++|+|.+||+.|.++++|.+++|++.+++
T Consensus 376 ~~~~~y~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~ 454 (523)
T PRK08316 376 QLMLGYWDDPEKTAEAFR-GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDP 454 (523)
T ss_pred chhhhhcCCHHHHHHHhh-CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCc
Confidence 999999999998888887 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 487 FWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 487 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
..++.++++++..++.. ...+++.++++++++.+++|..+++++++|+|++||++|++|+++|.+..
T Consensus 455 ~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~ 521 (523)
T PRK08316 455 KWIEAVTAVVVPKAGAT--VTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF 521 (523)
T ss_pred ccCCeEEEEEEECCCCC--CCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence 88888999999877654 67789999999999999999999999999999999999999999998754
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=547.41 Aligned_cols=484 Identities=20% Similarity=0.326 Sum_probs=411.6
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
|++.++|.++++.+|+++|+.+.++.+||.||.++++++|++|.+.| .+|++|+|+++|+++++++++||+++|++++|
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~-~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 67899999999999999999999999999999999999999999988 48999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++.++.+++.++++.++++.+|++......+... ...++.+.. +.+.
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~---------~~~~~~~~~-----------------------~~~~ 127 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPDE---------EGRVIEIDE-----------------------WKRM 127 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccchhhc---------cceEEEehh-----------------------hhhh
Confidence 99999999999999999999999987654332210 112222211 1111
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~ 253 (569)
+....... .......+++++++|||||||.||+|.++|+++..+.......+++..+|+++...|++|..++...+.++
T Consensus 128 ~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l 206 (487)
T PRK07638 128 IEKYLPTY-APIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTL 206 (487)
T ss_pred hhhccccc-cccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHH
Confidence 11111110 01113346789999999999999999999999998888888888899999999999999998877778889
Q ss_pred HhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh-c-CC
Q 044926 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES-L-GF 331 (569)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~-~-~~ 331 (569)
+.|+++++.+.+++..+++.++++++|++.++|+++..+.+... ... +.+.++++|+.++....+++.+ + ++
T Consensus 207 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~--~~~~~~~~G~~l~~~~~~~~~~~~~~~ 280 (487)
T PRK07638 207 YVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIE--NKMKIISSGAKWEAEAKEKIKNIFPYA 280 (487)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCC--ceeEEEEcCCCCCHHHHHHHHHHcCCC
Confidence 99999999888999999999999999999999999999987622 122 5667788999999999998884 4 78
Q ss_pred eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccccc
Q 044926 332 KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLG 411 (569)
Q Consensus 332 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 411 (569)
++++.||+||++.++..+... ......++|.|.++. .++|+|+ +|.+++.| +.|||+++|+.++.|
T Consensus 281 ~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~Gel~v~~~~~~~g 346 (487)
T PRK07638 281 KLYEFYGASELSFVTALVDEE----------SERRPNSVGRPFHNV-QVRICNE-AGEEVQKG--EIGTVYVKSPQFFMG 346 (487)
T ss_pred eEEEEecCCccCceEEecccc----------cCCCCCCCCcccCCc-EEEEECC-CCCCCCCC--CCeEEEEecccceee
Confidence 999999999998765543211 122345789999998 9999997 67888877 899999999999999
Q ss_pred ccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCce
Q 044926 412 YLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGET 491 (569)
Q Consensus 412 y~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~ 491 (569)
|++++..+...+. ++||+|||+|+++++|++++.||.+|+|+.+|.+|+|.+||++|.++|+|.+++|++.+++..|+.
T Consensus 347 y~~~~~~~~~~~~-~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~ 425 (487)
T PRK07638 347 YIIGGVLARELNA-DGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEK 425 (487)
T ss_pred ecCCHHHHhhhcc-CCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCe
Confidence 9999877665554 899999999999999999999999999999999999999999999999999999999999888888
Q ss_pred eEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCCC
Q 044926 492 PCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSSS 558 (569)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 558 (569)
++++++. . ...+++++++++.++.+++|..++++++||+|++||++|++|++++.+.+..+
T Consensus 426 ~~~~v~~----~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~ 486 (487)
T PRK07638 426 PVAIIKG----S--ATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEKIY 486 (487)
T ss_pred eEEEEEC----C--CCHHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcccccc
Confidence 8888763 1 56789999999999999999999999999999999999999999999887653
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=558.59 Aligned_cols=511 Identities=22% Similarity=0.255 Sum_probs=398.8
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCe----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHH
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNI----------TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYEL 80 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~----------~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~ 80 (569)
...+|+.++|.+.++.+|+++|+++.+. .+||+||.++++++|.+|.+.|+++||+|+++++|+++++++
T Consensus 3 ~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~ 82 (552)
T PRK09274 3 ASMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL 82 (552)
T ss_pred hhhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence 4567899999999999999999998654 899999999999999999999999999999999999999999
Q ss_pred HHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCC
Q 044926 81 HFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160 (569)
Q Consensus 81 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (569)
++||+++|++++|++|.++.+++.+++++++++++|++.+.. +.......... ....++.++.....
T Consensus 83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~-~~~~~i~~~~~~~~---------- 149 (552)
T PRK09274 83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH--LARRLFGWGKP-SVRRLVTVGGRLLW---------- 149 (552)
T ss_pred HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH--HHHHHhccCcc-chhheecccccccc----------
Confidence 999999999999999999999999999999999999975211 11111111000 02223322211000
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCc
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl 240 (569)
....+.++...............++++++++|||||||.||+|.++|+++...+......+++.++|+.++..|+
T Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl 224 (552)
T PRK09274 150 -----GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPL 224 (552)
T ss_pred -----CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCH
Confidence 012233333111111111122456899999999999999999999999999888888888899999999999999
Q ss_pred hhhhhhhHHHHHHHhCceEEEec-------cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 241 FHSNGWCFPWAMAAVGGTNICIR-------KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 241 ~~~~g~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
+|.+++ ..|++.++.+ .+++..+++.|+++++|+++++|+++..|.+.......++. ++|.+++
T Consensus 225 ~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~ 295 (552)
T PRK09274 225 FALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLP--SLRRVIS 295 (552)
T ss_pred HHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCc--hhhEEEe
Confidence 876442 4577766643 36789999999999999999999999999987654444555 9999999
Q ss_pred eCCCCcHHHHHHHHh-c--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCC----
Q 044926 314 AGAPPPAAVLLRTES-L--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPK---- 386 (569)
Q Consensus 314 ~g~~l~~~~~~~~~~-~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~---- 386 (569)
||+++++.+.+++++ + ++++++.||+||+++++....... ..............++|.|.+++ +++|+|+.
T Consensus 296 gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~-~~~ivd~~~~~~ 373 (552)
T PRK09274 296 AGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREI-LFATRAATDNGAGICVGRPVDGV-EVRIIAISDAPI 373 (552)
T ss_pred cCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhh-hccccccccCCCCcccCccCCCc-eEEEEecccccc
Confidence 999999999999984 5 579999999999987654322110 00000000011123689999998 99999863
Q ss_pred ----CCcccCCCCCceeEEEEecCcccccccCCccccccccC--CCC--eeeecceEEEecCCcEEEeccCCCeEEeCce
Q 044926 387 ----SGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT--DDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGE 458 (569)
Q Consensus 387 ----~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~ 458 (569)
++..++.| +.|||+++|++++.||+++++.+...+. .++ ||+|||+|++++||++++.||.+|+|+++|+
T Consensus 374 ~~~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~ 451 (552)
T PRK09274 374 PEWDDALRLATG--EIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGG 451 (552)
T ss_pred ccccccccCCCC--CeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCE
Confidence 35566666 8999999999999999999988877652 355 9999999999999999999999999999999
Q ss_pred eeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCC---CCccccEEEEecccC
Q 044926 459 NLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLP---HYMVPKTVVFMDELP 535 (569)
Q Consensus 459 ~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~---~~~~p~~~~~~~~iP 535 (569)
+|+|.+||++|.+||+|.+++|++.+++. ++.++++|++.++.. ...+++.+.+++.+. ..+.|..++++++||
T Consensus 452 ~v~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP 528 (552)
T PRK09274 452 TLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVA--CSKSALYQELRALAAAHPHTAGIERFLIHPSFP 528 (552)
T ss_pred EECcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCccc--cchHHHhhhhHHHHHhcCCCcceeEEeccCCCC
Confidence 99999999999999999999999998764 567888888877654 445556666655544 445778899999999
Q ss_pred CC--CCCcccHHHHHHHHHhcC
Q 044926 536 KT--STGKIQKFVLREIAENMG 555 (569)
Q Consensus 536 ~t--~~GKi~r~~l~~~~~~~~ 555 (569)
+| ++||++|++|++++.+..
T Consensus 529 ~t~~~~GKi~r~~L~~~~~~~~ 550 (552)
T PRK09274 529 VDIRHNAKIFREKLAVWAAKQL 550 (552)
T ss_pred ccccccccccHHHHHHHHHHhh
Confidence 99 799999999999887654
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=549.67 Aligned_cols=515 Identities=26% Similarity=0.392 Sum_probs=428.4
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeCC-eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYNN-ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVP 85 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~-~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~ 85 (569)
.+..|.+.|+.++|+++++.+|+++|+++.+ +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++||+
T Consensus 16 ~~~~~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~ 95 (547)
T PRK06087 16 QQGYWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACL 95 (547)
T ss_pred hcCCCCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3446788899999999999999999999875 799999999999999999999999999999999999999999999999
Q ss_pred hccceEeeccCCCCHHHHHHHHhhcCCeEEEEcccc-----HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCC
Q 044926 86 FAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS-----RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160 (569)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (569)
++|++++|++|.++.+++.++++.+++++++++... .+.+......... ...++.++......
T Consensus 96 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------- 163 (547)
T PRK06087 96 KVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQ---LQQIVGVDKLAPAT--------- 163 (547)
T ss_pred HcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCC---CcEEEEeCCcCCCc---------
Confidence 999999999999999999999999999999997642 2333333332221 23444443321000
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCc
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM 240 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl 240 (569)
....+.+++....... .......+++++++|||||||.||+|.++|.++..........+++..+|++++..|+
T Consensus 164 -----~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl 237 (547)
T PRK06087 164 -----SSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPL 237 (547)
T ss_pred -----CccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecch
Confidence 0123444443322211 1123456799999999999999999999999998888777777888999999999999
Q ss_pred hhhhhhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCc
Q 044926 241 FHSNGWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPP 319 (569)
Q Consensus 241 ~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~ 319 (569)
+|.+++.. .+.+++.|+++++.+.+++..+++.|+++++++++++|..+..+++........++ ++|.+++||++++
T Consensus 238 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~--~lr~i~~gG~~~~ 315 (547)
T PRK06087 238 GHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLS--ALRFFLCGGTTIP 315 (547)
T ss_pred HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCC--CeEEEEEcCCCCC
Confidence 99999765 55667789999888889999999999999999999888877777776544444444 9999999999999
Q ss_pred HHHHHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCcee
Q 044926 320 AAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLG 399 (569)
Q Consensus 320 ~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~G 399 (569)
+.+.+.+.+.++++++.||+||++++....... .......++|.+.++. .++++|+ ++.+++.| +.|
T Consensus 316 ~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~G 382 (547)
T PRK06087 316 KKVARECQQRGIKLLSVYGSTESSPHAVVNLDD---------PLSRFMHTDGYAAAGV-EIKVVDE-ARKTLPPG--CEG 382 (547)
T ss_pred HHHHHHHHHcCCcEEEEecccccCCccccCCCc---------chhhcCCcCCccCCCc-eEEEEcC-CCCCCcCC--Ccc
Confidence 999998887799999999999998765543211 0111234678899988 9999996 67778777 899
Q ss_pred EEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 400 EIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 400 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
||+++|+.++.||+++++.+...+..++||+|||+++++++|.+++.||.+|+|+.+|++++|.+||++|.++++|.+++
T Consensus 383 el~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~ 462 (547)
T PRK06087 383 EEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDAC 462 (547)
T ss_pred eEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEE
Confidence 99999999999999999988888877899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHh-ccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 480 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+++.+++..|+.++++++..+.. .....+++.++++ +.++.+++|..+.++++||+|.+||++|++|++++.+..
T Consensus 463 v~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~ 538 (547)
T PRK06087 463 VVAMPDERLGERSCAYVVLKAPH-HSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL 538 (547)
T ss_pred EEecCCCCcCceEEEEEEECCCC-CCCCHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence 99999888889999999887532 2256788888875 679999999999999999999999999999998887753
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=547.99 Aligned_cols=510 Identities=26% Similarity=0.383 Sum_probs=431.6
Q ss_pred CCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 9 ANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
-...-+++.+.|.+++..+|+++|+.+.++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 12 ~~~~~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G 91 (542)
T PRK07786 12 YLARRQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLG 91 (542)
T ss_pred CcccccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccc
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (569)
++++|+++..+.+++.+++++++++.+|++....+.+.......+. ...++...+.... ...
T Consensus 92 ~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------~~~ 153 (542)
T PRK07786 92 AIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPL---LSTVVVAGGSSDD---------------SVL 153 (542)
T ss_pred eEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCc---cceEEEecCCCcc---------------ccc
Confidence 9999999999999999999999999999998776655443322221 2344444322110 023
Q ss_pred hhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCC-CCCCEEEEecCchhhhhhh
Q 044926 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV-PTQPVYLWTLPMFHSNGWC 247 (569)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~-~~~d~~~~~~pl~~~~g~~ 247 (569)
.+.+++....... .......+++++++|||||||.||+|.++|+++...+......+++ ..++++++..|++|.+|+.
T Consensus 154 ~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 232 (542)
T PRK07786 154 GYEDLLAEAGPAH-APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG 232 (542)
T ss_pred CHHHHhhccCCCC-CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHH
Confidence 4555444332221 1123456789999999999999999999999998888777777776 6788999999999999998
Q ss_pred HHHHHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 248 FPWAMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 248 ~~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
..+.++..|+++++.+ .+++..+++.++++++|.++++|+++..++.........+ ++|.+++||+++++.+++.
T Consensus 233 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~---~lr~i~~gg~~~~~~~~~~ 309 (542)
T PRK07786 233 SMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDL---ALRVLSWGAAPASDTLLRQ 309 (542)
T ss_pred HHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccCc---ceEEEEECCCCCCHHHHHH
Confidence 8888899999998865 5799999999999999999999999999988754433332 7899999999999999999
Q ss_pred HH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEE
Q 044926 326 TE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403 (569)
Q Consensus 326 ~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 403 (569)
+. .+ +.++++.||+||++++...+.... ......++|.|+++. .++|+|+ ++..++.+ +.|||++
T Consensus 310 ~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v 376 (542)
T PRK07786 310 MAATFPEAQILAAFGQTEMSPVTCMLLGED---------AIRKLGSVGKVIPTV-AARVVDE-NMNDVPVG--EVGEIVY 376 (542)
T ss_pred HHHHcCCCeEEeeecccccccceEecCccc---------ccccCCCccccCCCc-eEEEECC-CCCCCcCC--CceEEEE
Confidence 88 45 789999999999987655432211 112335789999998 9999996 67777776 8999999
Q ss_pred ecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEec
Q 044926 404 RGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483 (569)
Q Consensus 404 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 483 (569)
+|+.+++||+++++.+...|. ++||+|||+++++++|.+++.||.+|+|+++|.++++.+||.+|.++++|.+++|++.
T Consensus 377 ~g~~~~~gy~~~~~~~~~~f~-~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~ 455 (542)
T PRK07786 377 RAPTLMSGYWNNPEATAEAFA-GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGR 455 (542)
T ss_pred EChhhhhhhcCCHHHHHHHhh-CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEec
Confidence 999999999999999988887 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 484 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+.+..++.++++++..+... ....+++.++++++++.+++|..++++++||+|++||++|++|++++.+..
T Consensus 456 ~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~ 526 (542)
T PRK07786 456 ADEKWGEVPVAVAAVRNDDA-ALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACV 526 (542)
T ss_pred cCcccCceEEEEEEECCCCC-CCCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhh
Confidence 88877888888888765432 256789999999999999999999999999999999999999999999887
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-67 Score=551.53 Aligned_cols=516 Identities=24% Similarity=0.340 Sum_probs=410.9
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYNN--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
++......|+.++|.+++..+|+++|+++.+ +.+||+||.++++++|.+|.+.|+++||+|+|+++|+++++++++||
T Consensus 9 ~~~~~~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 88 (534)
T PRK05852 9 PMASDFGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAA 88 (534)
T ss_pred chhhhhcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 3344556679999999999999999998744 57999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+++|+++++++|.++.+++.++++.++++++|++........... .. .....+.+....... . .
T Consensus 89 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~-------~----~ 152 (534)
T PRK05852 89 SRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPT--TR---WWPLTVNVGGDSGPS-------G----G 152 (534)
T ss_pred HHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccc--cc---ccceeeeeccccccc-------c----c
Confidence 999999999999999999999999999999999864322111000 00 011111111111000 0 0
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~ 244 (569)
.....+...... ...........++.++++|||||||.||+|.++|+++...+......+++..+|++++..|++|..
T Consensus 153 ~~~~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 230 (534)
T PRK05852 153 TLSVHLDAATEP--TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGH 230 (534)
T ss_pred ccccccccccCC--CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhH
Confidence 000000000000 000001112246889999999999999999999999998888888888899999999999999999
Q ss_pred hhhH-HHHHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHH
Q 044926 245 GWCF-PWAMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAA 321 (569)
Q Consensus 245 g~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~ 321 (569)
++.. .+.+++.|+++++.+ .+++..+++.++++++|+++++|.++..+.+............++|.++++|+++++.
T Consensus 231 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~ 310 (534)
T PRK05852 231 GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAE 310 (534)
T ss_pred HHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHH
Confidence 9876 445556666666543 4789999999999999999999999999988764332222233899999999999999
Q ss_pred HHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcc--cccceeeEEeCCCCCcccCCCCCce
Q 044926 322 VLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVK--TTALTEVDVLDPKSGVSAKRDGSTL 398 (569)
Q Consensus 322 ~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~i~d~~~~~~~~~~~~~~ 398 (569)
+++.+. .++.++++.||+||++..+..+....... ... ....+|.+ .+++ +++|+|+ ++..++.+ +.
T Consensus 311 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~---~~~---~~~~~g~~g~~~g~-~~~i~d~-~g~~~~~g--~~ 380 (534)
T PRK05852 311 TAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQ---TEN---PVVSTGLVGRSTGA-QIRIVGS-DGLPLPAG--AV 380 (534)
T ss_pred HHHHHHHHhCCChhhccCccccchhhhcCCcccccc---ccC---cccccccCCCCCCC-eEEEECC-CCCCCCCC--Cc
Confidence 999988 57999999999999987665432110000 000 01123333 5777 9999997 57778777 89
Q ss_pred eEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCccee
Q 044926 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478 (569)
Q Consensus 399 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~ 478 (569)
|||+++|+.+++||+++++.+...|. ++||+|||+|++++||++++.||.+|+|+.+|.+|++.+||++|.++|+|.++
T Consensus 381 Gel~v~g~~v~~gY~~~~~~t~~~~~-~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~ 459 (534)
T PRK05852 381 GEVWLRGTTVVRGYLGDPTITAANFT-DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEA 459 (534)
T ss_pred eEEEEecCcccchhcCCcccchhhhc-CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeE
Confidence 99999999999999999999988887 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 479 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
+|++.+++..++.++++|+..+... .+.+++.++++++++.+++|..++++++||+|++||++|++|+++|..
T Consensus 460 ~v~g~~~~~~g~~~~~~vv~~~~~~--~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 460 AVFGVPDQLYGEAVAAVIVPRESAP--PTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred EEEecCCcCcCceEEEEEEECCCCC--CCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence 9999999888888999988766544 678999999999999999999999999999999999999999998853
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=550.19 Aligned_cols=520 Identities=29% Similarity=0.475 Sum_probs=428.1
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEe--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~--~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
..+...+.|+.++|.+.++.+|+++|+++ .++.+||+||.++++++|..|.+.|+++||+|+++++|++++++++|||
T Consensus 9 ~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~ 88 (559)
T PRK08315 9 TDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFAT 88 (559)
T ss_pred CcCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHH
Confidence 34456788999999999999999999988 4578999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHH-----HHHHHHhcCCC--------C--CCCCCEEEEeCCCc
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA-----LVREAVSLFPP--------D--LKPPPLVLISDDDD 149 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~--------~--~~~~~~~~~~~~~~ 149 (569)
+++|++++|++|..+.+++.++++.++++.+|++.+... .+.+....... . .....++.......
T Consensus 89 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (559)
T PRK08315 89 AKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKH 168 (559)
T ss_pred HHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCC
Confidence 999999999999999999999999999999999875421 12221111100 0 00122222221110
Q ss_pred ccccccCCCCCCCCCcccchhhHhhhcCCCC-----cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc
Q 044926 150 AAVSSQSHHPNISDDQFFSTYESLVAKGDPE-----FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS 224 (569)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~ 224 (569)
.....+.++....... ........++++++++|||||||.||+|.++|+++..++.....
T Consensus 169 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~ 233 (559)
T PRK08315 169 ---------------PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGE 233 (559)
T ss_pred ---------------cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHH
Confidence 0013344433322100 01112245678999999999999999999999999988888888
Q ss_pred cCCCCCCCEEEEecCchhhhhhhH-HHHHHHhCceEEEe-ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCC
Q 044926 225 DWSVPTQPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKP 302 (569)
Q Consensus 225 ~~~~~~~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~ 302 (569)
.+++..+|+++...|++|..++.. .+.++..|+++++. ..+++..+++.++++++|++.++|+++..+..........
T Consensus 234 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~ 313 (559)
T PRK08315 234 AMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFD 313 (559)
T ss_pred hcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCC
Confidence 889999999999999999999866 55667778887744 4589999999999999999999999999888765544444
Q ss_pred CCcCCCceEEEeCCCCcHHHHHHHH-hcCC-eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceee
Q 044926 303 LKLAKPVHLVTAGAPPPAAVLLRTE-SLGF-KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEV 380 (569)
Q Consensus 303 ~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 380 (569)
+. ++|.+++||++++..+.+.+. .++. ++++.||+||++.++..+..... ......++|.|.++. .+
T Consensus 314 ~~--~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v 382 (559)
T PRK08315 314 LS--SLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDP--------LEKRVTTVGRALPHL-EV 382 (559)
T ss_pred ch--hhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccc--------hhhccCCCCccCCCc-EE
Confidence 44 999999999999999998887 5554 49999999999876654432211 112346789999998 99
Q ss_pred EEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceee
Q 044926 381 DVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENL 460 (569)
Q Consensus 381 ~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v 460 (569)
+|+|++++..++.| +.|||+++|++++.||++++..+...+..++||+|||+|++++||.+++.||.+|+++.+|.++
T Consensus 383 ~i~d~~~~~~~~~g--~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v 460 (559)
T PRK08315 383 KIVDPETGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENI 460 (559)
T ss_pred EEEcCccCCcCCCC--CceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEE
Confidence 99999878888887 8999999999999999999998888886689999999999999999999999999999999999
Q ss_pred eHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCC
Q 044926 461 SSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540 (569)
Q Consensus 461 ~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~G 540 (569)
++.+||++|.++++|.+++|++..++..++.++++|+..++.. ...++++++++++++.+++|..++++++||+|++|
T Consensus 461 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~G 538 (559)
T PRK08315 461 YPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGAT--LTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTG 538 (559)
T ss_pred cHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCC--CCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCC
Confidence 9999999999999999999999998877788888888876654 67789999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcCC
Q 044926 541 KIQKFVLREIAENMGS 556 (569)
Q Consensus 541 Ki~r~~l~~~~~~~~~ 556 (569)
|++|.+|++++.++..
T Consensus 539 K~~r~~L~~~~~~~~~ 554 (559)
T PRK08315 539 KIQKFKMREMMIEELG 554 (559)
T ss_pred ceeHHHHHHHHHhhhc
Confidence 9999999999887654
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=556.85 Aligned_cols=503 Identities=18% Similarity=0.220 Sum_probs=392.6
Q ss_pred HcCCCCeEEeCC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCH
Q 044926 26 VYGDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDA 100 (569)
Q Consensus 26 ~~p~~~al~~~~-----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~ 100 (569)
.+++++|+++.+ +.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.
T Consensus 96 ~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~ 175 (652)
T TIGR01217 96 AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA 175 (652)
T ss_pred cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCH
Confidence 467899998743 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 101 RTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 101 ~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+++.+++++++++++|+++.. .+.+.++....+. .+.++++......... . .. .. ....++
T Consensus 176 ~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~--~--~~-~~--~~~~~~ 245 (652)
T TIGR01217 176 RGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPT---LRAVVHIPYLGPRETE--A--PK-ID--GALDLE 245 (652)
T ss_pred HHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCC---ccEEEEEeCCCCcccc--c--cc-cc--CcccHH
Confidence 999999999999999998653 3344444433321 3445554322110000 0 00 00 123456
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHH-HHhhhhccCCCCCCCEEEEecCchhhhhhhHHH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFI-VAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~-~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~ 250 (569)
+++...............+++++|+|||||||.||||+++|.+++. ........+++.++|++++..|+.|... ...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~ 324 (652)
T TIGR01217 246 DFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWLV 324 (652)
T ss_pred HHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHHH
Confidence 6554321111111234568999999999999999999999998654 3444455678899999999999998753 3456
Q ss_pred HHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHH
Q 044926 251 AMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT 326 (569)
Q Consensus 251 ~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~ 326 (569)
.+++.|+++++.+. .++..++++++++++|++...|.++..+............++++|.+++||+++++++.+++
T Consensus 325 ~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~ 404 (652)
T TIGR01217 325 SGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWV 404 (652)
T ss_pred HHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHH
Confidence 78899999998752 37889999999999999988888887776542221122234499999999999999999988
Q ss_pred H-hcC--CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEE
Q 044926 327 E-SLG--FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403 (569)
Q Consensus 327 ~-~~~--~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 403 (569)
. .++ +.+.+.||+||+++...... . . .......+|.|.++. +++|+|+ +|.++ .| +.|||++
T Consensus 405 ~~~~~~~~~~~~~yG~TE~~~~~~~~~--~-------~-~~~~~g~~g~p~~g~-~v~ivd~-~g~~~-~g--~~GEl~v 469 (652)
T TIGR01217 405 YDEIKADVWLASISGGTDICSCFAGAN--P-------T-LPVHIGEIQAPGLGT-AVQSWDP-EGKPV-TG--EVGELVC 469 (652)
T ss_pred HHHhCCCceEEeccCHHHHhccccCCC--C-------C-CCCcCCccCCCcCCC-ceEEECC-CCCCC-CC--CccEEEE
Confidence 7 443 56788999999753332211 0 0 011234678889998 9999997 56666 35 8999999
Q ss_pred ecC--cccccccCCccccc--cc-cC-CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcce
Q 044926 404 RGG--CIMLGYLKDPIGTR--KC-MT-DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477 (569)
Q Consensus 404 ~~~--~~~~gy~~~~~~~~--~~-~~-~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~ 477 (569)
+|| +++.|||++++.+. .. |. .+|||+|||+|++++||++++.||.||+|+++|++|+|.+||.+|.+||+|.+
T Consensus 470 ~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~e 549 (652)
T TIGR01217 470 TNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRE 549 (652)
T ss_pred ecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcce
Confidence 996 68999999998654 11 22 26789999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCceeEEEEEecCCCCCC-CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 478 AAVVARPDEFWGETPCAFVSLKEGSKSK-PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 478 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
++|++.+++.+|+.++++|++.++.... ...++|+++++++|+.+++|+.|+++++||+|++||++|+.|++.+...
T Consensus 550 aavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~ 627 (652)
T TIGR01217 550 SLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGT 627 (652)
T ss_pred EEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCC
Confidence 9999999998899999999998765411 1236899999999999999999999999999999999999999987543
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=550.88 Aligned_cols=533 Identities=26% Similarity=0.414 Sum_probs=429.7
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEEeCC---eeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHH
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSIIYNN---ITYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~---~~~Ty~el~~~v~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
...+.|+|+.++|++++..+|++.|+++.+ +.+||+||.+++.++|.+|.+ .|+++||+|+++++|+++++++++|
T Consensus 4 ~~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA 83 (576)
T PRK05620 4 TMQDVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFA 83 (576)
T ss_pred hhhcCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 456788999999999999999999998753 789999999999999999997 7999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|+++++++|+.+.+++.++++.++++++|++....+.+.+....... ...++.++...... .. .....
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~---~~--~~~~~ 155 (576)
T PRK05620 84 VACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPC---VRAVVFIGPSDADS---AA--AHMPE 155 (576)
T ss_pred HHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCcc---ccEEEEecCccccc---ch--hcccc
Confidence 999999999999999999999999999999999998877776666544332 23444443221110 00 00011
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhh--hccCCCCCCCEEEEecCch
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNT--LSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~--~~~~~~~~~d~~~~~~pl~ 241 (569)
.....++.++++....... .....++++++++|||||||.||+|.++|+++....... ...+++..++++++..|++
T Consensus 156 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 234 (576)
T PRK05620 156 GIKVYSYEALLDGRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIY 234 (576)
T ss_pred ccccccHHHHhhcCCCcCC-CCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChH
Confidence 1123457777654322211 123456899999999999999999999999986554432 2346788999999999999
Q ss_pred hhhhhhHHHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcH
Q 044926 242 HSNGWCFPWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPA 320 (569)
Q Consensus 242 ~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~ 320 (569)
|.+++...+.++..|+++++.+ .+++..+++.++++++|+++++|+++..++........... ++|.+++||+.+++
T Consensus 235 h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~l~~~~~gG~~~~~ 312 (576)
T PRK05620 235 HVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERM--SLQEIYVGGSAVPP 312 (576)
T ss_pred HhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccC--ceeEEEEcCCCCCH
Confidence 9999988888888999888765 47999999999999999999999999988765432322333 79999999999999
Q ss_pred HHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCcee
Q 044926 321 AVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLG 399 (569)
Q Consensus 321 ~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~G 399 (569)
.+.++++ .+++++++.||+||++..+......... ..........++|.+.++. +++++|+ +..++..+++.|
T Consensus 313 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~~~-~~~i~~~--g~~~~~~~~~~G 386 (576)
T PRK05620 313 ILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGV---SGEARWAYRVSQGRFPASL-EYRIVND--GQVMESTDRNEG 386 (576)
T ss_pred HHHHHHHHHhCCceeeeccccccccceeeeccCCcc---ccccccccccccCCcCCce-eEEEecC--CccccCCCCCce
Confidence 9999987 5689999999999998765543211100 0000001123678888887 8999985 555543333789
Q ss_pred EEEEecCcccccccCCcccc----------------ccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHH
Q 044926 400 EIVLRGGCIMLGYLKDPIGT----------------RKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSV 463 (569)
Q Consensus 400 el~v~~~~~~~gy~~~~~~~----------------~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~ 463 (569)
||+++|++++.||+++++.+ ...+..++||+|||+|++++||.+++.||.+|+|+.+|.+|++.
T Consensus 387 el~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~ 466 (576)
T PRK05620 387 EIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSA 466 (576)
T ss_pred EEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHH
Confidence 99999999999999998877 23344578999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCC-CCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcc
Q 044926 464 EVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542 (569)
Q Consensus 464 ~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi 542 (569)
+||.+|.++|.|.+++|++.+++..|+.++++++..++.. .+...++|+++++++|+.+++|+.++++++||+|.+||+
T Consensus 467 eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv 546 (576)
T PRK05620 467 QLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKF 546 (576)
T ss_pred HHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccC
Confidence 9999999999999999999999988888888888877643 124678999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCC
Q 044926 543 QKFVLREIAENMGSS 557 (569)
Q Consensus 543 ~r~~l~~~~~~~~~~ 557 (569)
+|++|++++.+....
T Consensus 547 ~r~~L~~~~~~~~~~ 561 (576)
T PRK05620 547 DKKDLRQHLADGDFE 561 (576)
T ss_pred cHHHHHHHHhcCCcc
Confidence 999999999987643
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=558.69 Aligned_cols=512 Identities=20% Similarity=0.226 Sum_probs=401.8
Q ss_pred chHHHHHHHHHHcCCCCeEEeCC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 15 TPLVFLERAATVYGDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~-----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
++.+.+.++ .+|+++|+++.+ +.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Ga 164 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence 444444332 579999999854 6899999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCC
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (569)
+++|+++.++.+++.++++.++++++|+++.. .+.+.+....... ...++.+........ .
T Consensus 165 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~------~- 234 (655)
T PRK03584 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPS---LEHVVVVPYLGPAAA------A- 234 (655)
T ss_pred EEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCC---ccEEEEEecCCCccc------c-
Confidence 99999999999999999999999999998653 2233333332221 344555443211000 0
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHH-HhhhhccCCCCCCCEEEEecC
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIV-AVNTLSDWSVPTQPVYLWTLP 239 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~-~~~~~~~~~~~~~d~~~~~~p 239 (569)
........|++++...............+++++|+|||||||.||||+++|.+++.. .......+++.++|++++..+
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 313 (655)
T PRK03584 235 -AALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTT 313 (655)
T ss_pred -cccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence 000012345565542222111223356789999999999999999999999987543 455556678899999999999
Q ss_pred chhhhhhhHHHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeC
Q 044926 240 MFHSNGWCFPWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG 315 (569)
Q Consensus 240 l~~~~g~~~~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g 315 (569)
+.|... ...+.+++.|+++++.+. .++..++++++++++|++.++|+++..+.+..........++++|.+++||
T Consensus 314 ~~~~~~-~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~G 392 (655)
T PRK03584 314 CGWMMW-NWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTG 392 (655)
T ss_pred chHHhH-HHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEec
Confidence 888754 345678889999988752 579999999999999999999999999876532222222334999999999
Q ss_pred CCCcHHHHHHHH-hc--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccC
Q 044926 316 APPPAAVLLRTE-SL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAK 392 (569)
Q Consensus 316 ~~l~~~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~ 392 (569)
+++++++.+++. .+ ++.+++.||+||+++.+..... .......++|.|.+++ +++|+|+ +|..+
T Consensus 393 e~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~----------~~~~~~g~~g~p~~g~-~~~ivd~-~g~~~- 459 (655)
T PRK03584 393 SPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNP----------LLPVYRGEIQCRGLGM-AVEAWDE-DGRPV- 459 (655)
T ss_pred CCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCC----------CCCcCCCccCCCcCCc-eeEEECC-CCCCC-
Confidence 999999999987 44 5889999999998644332110 0011235678899998 9999997 56666
Q ss_pred CCCCceeEEEEecC--cccccccCCcccccc--c-cC-CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHH
Q 044926 393 RDGSTLGEIVLRGG--CIMLGYLKDPIGTRK--C-MT-DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVE 466 (569)
Q Consensus 393 ~~~~~~Gel~v~~~--~~~~gy~~~~~~~~~--~-~~-~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE 466 (569)
.+ +.|||+++|| +++.||+++++.+.. . |. .++||+|||+|++++||++++.||.||+||++|++|++.+||
T Consensus 460 ~g--~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE 537 (655)
T PRK03584 460 VG--EVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIY 537 (655)
T ss_pred CC--CceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHH
Confidence 45 8899999996 799999999875431 1 11 257899999999999999999999999999999999999999
Q ss_pred HHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCC-CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHH
Q 044926 467 SVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK-PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKF 545 (569)
Q Consensus 467 ~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~ 545 (569)
.+|.+||+|.+++|++.+++..++.++++|++.++.... ...++|+++++++|+.+++|..++++++||+|++||++|+
T Consensus 538 ~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~ 617 (655)
T PRK03584 538 RQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVEL 617 (655)
T ss_pred HHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHH
Confidence 999999999999999999988889999999998764311 1236899999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 044926 546 VLREIAENMG 555 (569)
Q Consensus 546 ~l~~~~~~~~ 555 (569)
.|++++.+..
T Consensus 618 ~lr~~~~~~~ 627 (655)
T PRK03584 618 PVKKLLHGRP 627 (655)
T ss_pred HHHHHHcCCC
Confidence 9999987654
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=542.37 Aligned_cols=498 Identities=27% Similarity=0.395 Sum_probs=423.8
Q ss_pred CCchHHHHHHHHHHcCCCCeEEe-CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 13 PLTPLVFLERAATVYGDSPSIIY-NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~-~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
.-++.++|.+++ .+|+++|+.+ .++.+||.||.++++++|..|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 357899999999 9999999987 56789999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|+++..+.+++.++++.++++++|+++...+.+........ ...++.++.... ..+.
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------------------~~~~ 138 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAG----APHVETLDADGT------------------GSLL 138 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccC----CceEEEecCCCc------------------ccHH
Confidence 999999999999999999999999999887665554433221 222443332211 0111
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PW 250 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~ 250 (569)
+....... ........++++++++|||||||.||+|.++|+++...+......+++..+|++++..|++|..++.. .+
T Consensus 139 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 217 (504)
T PRK07514 139 EAAAAAPD-DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATN 217 (504)
T ss_pred HhhhhcCc-ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHH
Confidence 11111111 11112345789999999999999999999999999988888777888999999999999999998865 56
Q ss_pred HHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hc
Q 044926 251 AMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL 329 (569)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~ 329 (569)
..++.|+++++.+..++..+++.+. ++|++.++|.++..+++........++ ++|.+++||+++++.+.+.+. .+
T Consensus 218 ~~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gg~~~~~~~~~~~~~~~ 293 (504)
T PRK07514 218 VALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAA--HMRLFISGSAPLLAETHREFQERT 293 (504)
T ss_pred HHHhcCcEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCccccc--ceeeEEecCCCCCHHHHHHHHHHh
Confidence 6788899999888889999999994 699999999999999887654444454 899999999999999999988 56
Q ss_pred CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccc
Q 044926 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIM 409 (569)
Q Consensus 330 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 409 (569)
+.++++.||+||++....... ........+|.|.++. +++|+|++++.+++.| +.|||+++|+.++
T Consensus 294 ~~~~~~~YG~tE~~~~~~~~~-----------~~~~~~~~~G~~~~~~-~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~ 359 (504)
T PRK07514 294 GHAILERYGMTETNMNTSNPY-----------DGERRAGTVGFPLPGV-SLRVTDPETGAELPPG--EIGMIEVKGPNVF 359 (504)
T ss_pred CCcceeecccccccccccCCc-----------cccccCcccccCCCCc-EEEEEECCCCCCCCCC--CceEEEEecCCcc
Confidence 899999999999875443211 0111235788999998 9999998899998877 8999999999999
Q ss_pred ccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCC
Q 044926 410 LGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489 (569)
Q Consensus 410 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~ 489 (569)
.||+++++.+...|..++||+|||+|+++++|.+++.||.+|+|+.+|+++++.+||+.+.++++|.+++|++.+++..+
T Consensus 360 ~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~ 439 (504)
T PRK07514 360 KGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFG 439 (504)
T ss_pred ccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcC
Confidence 99999999998888878999999999999999999999999999999999999999999999999999999999988778
Q ss_pred ceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 490 ETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+.++++++..++.. .+.+++++.++++++++++|..++++++||+|++||++|++|+++++++
T Consensus 440 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 440 EGVTAVVVPKPGAA--LDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502 (504)
T ss_pred ceEEEEEEECCCCC--CCHHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 88899998876654 5788999999999999999999999999999999999999999998865
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=542.93 Aligned_cols=490 Identities=23% Similarity=0.287 Sum_probs=406.8
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.+.|+.++|++++. ++++|+++.++.+||+||.++++++|.+|.+. |++++++|+++++|+++++++++||+++|++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 80 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIV 80 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 45679999998885 78999999999999999999999999999997 8899999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|+++..+.+++.+++++++++++|++++....+.... . ...++.+.. ..+
T Consensus 81 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~----~~~~~~~~~---------------------~~~ 132 (529)
T PRK07867 81 PVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---P----GVRVINVDS---------------------PAW 132 (529)
T ss_pred EEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---c----CceEEEecc---------------------ccH
Confidence 999999999999999999999999999987665433321 0 112222211 113
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHH-
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP- 249 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~- 249 (569)
.+.+..............++++++++|||||||.||+|.++|+++..........+++..+|++++..|++|..++...
T Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~ 212 (529)
T PRK07867 133 ADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGW 212 (529)
T ss_pred HHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHH
Confidence 3322221111111123456899999999999999999999999998888888888899999999999999999988664
Q ss_pred HHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhc
Q 044926 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL 329 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~ 329 (569)
+..+..|+++++.+.+++..+++.++++++|++.++|+.+..++...+...... .++| +++||+.+++......+.+
T Consensus 213 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~--~~lr-~~~gg~~~~~~~~~~~~~~ 289 (529)
T PRK07867 213 AVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDAD--NPLR-IVYGNEGAPGDIARFARRF 289 (529)
T ss_pred HHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccc--cceE-EEecCCCChHHHHHHHHHh
Confidence 456778888888788899999999999999999999999999887654332222 2666 4568888887654444477
Q ss_pred CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCc------------
Q 044926 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST------------ 397 (569)
Q Consensus 330 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~------------ 397 (569)
++++++.||+||++..+..+. . ....++|.+.++ ++++|++++..++.+ +
T Consensus 290 g~~l~~~YG~TE~~~~~~~~~---~----------~~~~~~g~~~~~---~~i~~~~~~~~~~~g--~~~~~~~~~~~~~ 351 (529)
T PRK07867 290 GCVVVDGFGSTEGGVAITRTP---D----------TPPGALGPLPPG---VAIVDPDTGTECPPA--EDADGRLLNADEA 351 (529)
T ss_pred CCcEEEeecccccccccccCC---C----------CCCCCcCCCCCC---EEEEECCCCCCCCCC--ccccccccccCCc
Confidence 999999999999975543221 0 112457888776 677887778777776 5
Q ss_pred eeEEEE-ecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcc
Q 044926 398 LGEIVL-RGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVN 476 (569)
Q Consensus 398 ~Gel~v-~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~ 476 (569)
.|||++ +|++++.||+++++.+...+. +|||+|||+|+++++|.+++.||.+|+|+.+|++|+|.+||++|.++|+|.
T Consensus 352 ~Gel~i~~g~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~ 430 (529)
T PRK07867 352 IGELVNTAGPGGFEGYYNDPEADAERMR-GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDAT 430 (529)
T ss_pred ceEEEEecCCcccccccCChHhhhhhhc-CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCee
Confidence 899999 999999999999999888887 899999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc--CCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 477 EAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR--LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 477 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+++|++.+++..|+.++++++..++.. .+.++++++++++ |+.+++|..++++++||+|++||++|++|+++....
T Consensus 431 ~~~V~g~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~ 508 (529)
T PRK07867 431 EVAVYAVPDPVVGDQVMAALVLAPGAK--FDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDC 508 (529)
T ss_pred EEEEEeccCCCCCeeEEEEEEECCCCC--CCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCC
Confidence 999999999988999999999887655 6889999999875 999999999999999999999999999999987554
Q ss_pred C
Q 044926 555 G 555 (569)
Q Consensus 555 ~ 555 (569)
.
T Consensus 509 ~ 509 (529)
T PRK07867 509 A 509 (529)
T ss_pred C
Confidence 4
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=541.49 Aligned_cols=492 Identities=31% Similarity=0.456 Sum_probs=416.9
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
+++.++|.++++.+|+++|+++.++.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++..+.+++.++++.++++.++++.+....... ....+.++.... ..+..+
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~------------------~~~~~~ 133 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL----------ETPKIVIDAAAQ------------------ADSRRL 133 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEccchhhhhhc----------ccceEEecCccc------------------chhHHH
Confidence 9999999999999999999999998765432110 112222221110 001111
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWAM 252 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~~ 252 (569)
... ...........++++++++|||||||.||+|.++|+++...+......+++..+++++...|++|.+++.. .+..
T Consensus 134 ~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 212 (497)
T PRK06145 134 AQG-GLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAV 212 (497)
T ss_pred hcc-CCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHH
Confidence 100 00111112345679999999999999999999999999877666666778999999999999999998865 4667
Q ss_pred HHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hc-C
Q 044926 253 AAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL-G 330 (569)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~-~ 330 (569)
++.|+++++.+.+++..+++.++++++|++.++|+++..++.........++ ++|.+++||+++++.+++.+. .+ +
T Consensus 213 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~--~l~~~~~gG~~~~~~~~~~~~~~~~~ 290 (497)
T PRK06145 213 LWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLD--SLAWCIGGGEKTPESRIRDFTRVFTR 290 (497)
T ss_pred HhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccc--cceEEEecCCCCCHHHHHHHHHHcCC
Confidence 7889998888889999999999999999999999999999987655444444 899999999999999999887 44 6
Q ss_pred CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccc
Q 044926 331 FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIML 410 (569)
Q Consensus 331 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 410 (569)
.++++.||+||+++.++...... ......++|.+.++. .++++|+ ++..++.+ +.|||+++|++++.
T Consensus 291 ~~v~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~~--~~Gel~v~g~~~~~ 357 (497)
T PRK06145 291 ARYIDAYGLTETCSGDTLMEAGR---------EIEKIGSTGRALAHV-EIRIADG-AGRWLPPN--MKGEICMRGPKVTK 357 (497)
T ss_pred CceEEeecCcccCCcceeccCcc---------ccccCCCcccCCCCc-eEEEECC-CCCCCCCC--CceEEEEECcchhh
Confidence 88999999999987654332111 111234689999998 9999997 67777776 89999999999999
Q ss_pred cccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCc
Q 044926 411 GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGE 490 (569)
Q Consensus 411 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~ 490 (569)
||+++++.+...|. ++||+|||+|++++||++++.||.+|+|+.+|.++++.+||..|.++++|.+++|++.+++..|+
T Consensus 358 Gy~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 436 (497)
T PRK06145 358 GYWKDPEKTAEAFY-GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGE 436 (497)
T ss_pred hhcCChHHHHHHHh-CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCc
Confidence 99999999888886 89999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHH
Q 044926 491 TPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~ 552 (569)
.+++++++.+... ...++++++++++++.+++|..++++++||+|++||++|++|++++.
T Consensus 437 ~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 437 RITAVVVLNPGAT--LTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred eEEEEEEECCCCC--CCHHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 8999988876544 57889999999999999999999999999999999999999998764
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=546.47 Aligned_cols=520 Identities=26% Similarity=0.326 Sum_probs=419.5
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
.....++.++|.+++..+|+++|++..++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 85 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCc
Confidence 34556899999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHH-HHHHHHhcCCCC--CCCCCEEEEeCCCcccccccCCCCCCCCCcc
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA-LVREAVSLFPPD--LKPPPLVLISDDDDAAVSSQSHHPNISDDQF 166 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (569)
+++|+++..+.+++.+++++++++++|++.+... .+.......... ...+.++.++...... +...
T Consensus 86 ~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---- 154 (540)
T PRK06164 86 TVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT-------PAPA---- 154 (540)
T ss_pred EEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC-------CCCC----
Confidence 9999999999999999999999999999876421 111111111110 0123444443211100 0000
Q ss_pred cchhhHhhhcCCCCc--c-cCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhh
Q 044926 167 FSTYESLVAKGDPEF--E-WIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHS 243 (569)
Q Consensus 167 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~ 243 (569)
...+........... . ......++++++++|||||||.||+|.++|+++..+.......+++..++++++.+|++|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 234 (540)
T PRK06164 155 PGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGV 234 (540)
T ss_pred cccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhH
Confidence 000001111000000 0 0112346789999999999999999999999999988888888899999999999999999
Q ss_pred hhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeC-CCCcHHH
Q 044926 244 NGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG-APPPAAV 322 (569)
Q Consensus 244 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g-~~l~~~~ 322 (569)
+|+...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+.. .....++ +++.+.++| .......
T Consensus 235 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~--~l~~~~~~~~~~~~~~~ 311 (540)
T PRK06164 235 FGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFP--SARLFGFASFAPALGEL 311 (540)
T ss_pred HHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCc--ceeeeeeccCCcchHHH
Confidence 99988888899999998888899999999999999999999999999998872 2333444 888876665 4555666
Q ss_pred HHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCccc-ccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 323 LLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKT-TALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 323 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
.+++...++++++.||+||+++.+..+..... ........|.+. +++ .++|+|++++..++.| +.|||
T Consensus 312 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~-~~~i~d~~~~~~~~~g--~~Gel 380 (540)
T PRK06164 312 AALARARGVPLTGLYGSSEVQALVALQPATDP--------VSVRIEGGGRPASPEA-RVRARDPQDGALLPDG--ESGEI 380 (540)
T ss_pred HHHHhhcCCceecceeeccccceeeccCCCCC--------CcceeccCccccCCCe-EEEEecCCCCcCCCCC--CeeEE
Confidence 66666568999999999999876554332110 011123456665 455 8999999889888877 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
|++|++++.||+++++.+...|..++||+|||+|++++||.+++.||.+|+|+.+|++|+|.+||+.|.++++|.+++|+
T Consensus 381 ~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~ 460 (540)
T PRK06164 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVV 460 (540)
T ss_pred EEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEE
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCC---cccHHHHHHHHHhcCCC
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG---KIQKFVLREIAENMGSS 557 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~G---Ki~r~~l~~~~~~~~~~ 557 (569)
+.+. ..+..++++++..++.. .+.++++++++++++++++|+.++++++||+|++| |++|+.|++++++..+.
T Consensus 461 ~~~~-~~~~~~~~~vv~~~~~~--~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~ 536 (540)
T PRK06164 461 GATR-DGKTVPVAFVIPTDGAS--PDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAA 536 (540)
T ss_pred ecCC-CCceeEEEEEEeCCCCC--CCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhh
Confidence 9874 34567888888876654 67899999999999999999999999999999998 99999999998877654
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-66 Score=543.74 Aligned_cols=498 Identities=30% Similarity=0.449 Sum_probs=414.0
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEe------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
+.+.|+.++|++++..+|+++|++. .++.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus 19 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 19 WRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred cccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 4567899999999999999999986 2368999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHH-----HHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA-----LVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
+++|++++|++|..+.+++.++++.++++++|+++.... ...+....... ...++..+....
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------- 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPA---LRQVVVIDGDGD---------- 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCc---ceEEEEecCCCC----------
Confidence 999999999999999999999999999999999876421 11121111111 233444432110
Q ss_pred CCCCCcccchhhHhhhcCCCC--c-----ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCC
Q 044926 160 NISDDQFFSTYESLVAKGDPE--F-----EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP 232 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d 232 (569)
..++.++...... . .......++++++++|||||||.||+|.++|+++...+......+++..+|
T Consensus 166 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d 237 (538)
T TIGR03208 166 --------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGD 237 (538)
T ss_pred --------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCC
Confidence 1122222111000 0 001124568999999999999999999999999998888888888889999
Q ss_pred EEEEecCchhhhhhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceE
Q 044926 233 VYLWTLPMFHSNGWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311 (569)
Q Consensus 233 ~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~ 311 (569)
++++..|++|..++.. .+.+++.|+++++.+.+++..+++.++++++|++.++|.++..+..........++ ++|.+
T Consensus 238 ~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~--~l~~~ 315 (538)
T TIGR03208 238 VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVP--SLFTF 315 (538)
T ss_pred eEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCC--cceEE
Confidence 9999999999988755 66778889988888888999999999999999999999999998876543334444 89999
Q ss_pred EEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcc
Q 044926 312 VTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVS 390 (569)
Q Consensus 312 ~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~ 390 (569)
++||+++++.+.++++ .+++++++.||+||++++...+.... .......+|.|.+++ .++|+|+ ++..
T Consensus 316 ~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~g~-~v~i~~~-~~~~ 384 (538)
T TIGR03208 316 LCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDA---------LEKASTTDGRPLPGV-EVKVIDA-NGAK 384 (538)
T ss_pred EEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccc---------hhhccCcccccCCCC-EEEEECC-CCCC
Confidence 9999999999999887 57999999999999987655432110 111234679999998 9999997 6777
Q ss_pred cCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHH
Q 044926 391 AKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470 (569)
Q Consensus 391 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~ 470 (569)
++.| +.|||+++|+.++.||+++++.+. +..++||+|||+|+++++|.+++.||.+|+|+.+|++|+|.+||.+|.
T Consensus 385 ~~~g--~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~ 460 (538)
T TIGR03208 385 LSQG--ETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLY 460 (538)
T ss_pred CcCC--CCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHh
Confidence 7776 889999999999999999987764 345899999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 471 ~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
++++|.+++|++.+++..|+.+.++++..++.. .+.+++.+++++ +++.+++|..++++++||+|++||++|++|+
T Consensus 461 ~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~--~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 461 QHPAVAQVAIVAYPDERLGERACAVVVPKPGCT--LDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred cCcceeeEEEEeccCCCCCceEEEEEEECCCCC--CCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 999999999999998888888999999876654 677899999985 7999999999999999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=543.42 Aligned_cols=503 Identities=24% Similarity=0.351 Sum_probs=416.4
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~-----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
...|+.++|+++++++|+++|+++.+ +.+||.||.++++++|.+|.+.|+++||+|+++++|+.+++++++||++
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~ 84 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK 84 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 44689999999999999999998754 6899999999999999999999999999999999999999999999999
Q ss_pred ccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcc
Q 044926 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQF 166 (569)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (569)
+|+++++++|..+.+++.+++++++++.+|++.+..+.+.+........ .+.++......... ..
T Consensus 85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~ 149 (517)
T PRK08008 85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATP--LRHICLTRVALPAD-------------DG 149 (517)
T ss_pred cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcccc--CcEEEEecCCCccc-------------cc
Confidence 9999999999999999999999999999999988777666554332211 33444443321100 00
Q ss_pred cchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhh
Q 044926 167 FSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW 246 (569)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~ 246 (569)
...+.+.............+..++++++++|||||||.||+|.++|.++............+..++++++..|++|..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 229 (517)
T PRK08008 150 VSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQ 229 (517)
T ss_pred ccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHH
Confidence 23344433332222122223456899999999999999999999999998665444444567889999999999998766
Q ss_pred hH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 247 CF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 247 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
.. .+.++..|+++++.+.+++..+++.++++++|++.++|.++..++........... .++.+.+++ .+++.....
T Consensus 230 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~l~~~~~~~-~~~~~~~~~ 306 (517)
T PRK08008 230 CTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQH--CLREVMFYL-NLSDQEKDA 306 (517)
T ss_pred HHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccc--cceeeEEec-CCCHHHHHH
Confidence 55 56667788888888889999999999999999999999999998876543333333 677777754 788888877
Q ss_pred HH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEe
Q 044926 326 TE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404 (569)
Q Consensus 326 ~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 404 (569)
+. .+++++++.||+||+++.+....... .....++|.|.++. +++|+|+ ++..++.| +.|||+++
T Consensus 307 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~g~-~~~i~d~-~~~~~~~g--~~Gel~v~ 372 (517)
T PRK08008 307 FEERFGVRLLTSYGMTETIVGIIGDRPGD----------KRRWPSIGRPGFCY-EAEIRDD-HNRPLPAG--EIGEICIK 372 (517)
T ss_pred HHHHhCCeEEeeccccccccccccCCccc----------cccCCccccCCCCc-EEEEECC-CCCCCCCC--CcceEEEe
Confidence 76 56999999999999986555432111 12235789999998 9999996 67888877 89999999
Q ss_pred c---CcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 405 G---GCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 405 ~---~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
| ++++.||+++++.+...|..++||+|||+|++++||.+++.||.+|+|+.+|++|+|.+||.++.+++.|.+++|+
T Consensus 373 g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~ 452 (517)
T PRK08008 373 GVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVV 452 (517)
T ss_pred CCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEE
Confidence 8 6899999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
+.+++..++.+.++|+..++.. .+.++++++++++++++++|..++++++||+|++||++|+.|+
T Consensus 453 g~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 453 GIKDSIRDEAIKAFVVLNEGET--LSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred ccCCCCCCceEEEEEEECCCCC--CCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 9998887888999999887654 6778999999999999999999999999999999999999874
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=543.20 Aligned_cols=501 Identities=26% Similarity=0.358 Sum_probs=422.2
Q ss_pred chHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeec
Q 044926 15 TPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI 94 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (569)
++.++|++.++.+|+++|+.+.++.+||+||.+++.++|.+|.+.|+.+||+|+++++|+.+++++++||+++|++++|+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhh
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
++..+.+++.++++.++++++|++.+..+.+........ ....++.++....... .......|+++.
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 147 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCH---DLRTLILVGEPAHASE----------GGGESPSWPKLL 147 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhccc---ccceEEEecCcccccC----------CccccccHHHhh
Confidence 999999999999999999999998876665544433322 1344555543321110 011123445444
Q ss_pred hcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHH
Q 044926 175 AKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAA 254 (569)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~ 254 (569)
...... ...+...+++++++|||||||.||+|.+||+++...+......+++..+|++++..|++|.+++...+.++.
T Consensus 148 ~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~ 225 (515)
T TIGR03098 148 ALGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFY 225 (515)
T ss_pred cccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHH
Confidence 332211 112234578999999999999999999999999988888777888899999999999999999988889999
Q ss_pred hCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh-c-CCe
Q 044926 255 VGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES-L-GFK 332 (569)
Q Consensus 255 ~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~-~-~~~ 332 (569)
.|+++++.+.+++..+++.++++++|++.++|+++..+.+..... .... ++|.++++|+++++.+.+.+++ + ++.
T Consensus 226 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~--~l~~~~~~g~~l~~~~~~~~~~~~~~~~ 302 (515)
T TIGR03098 226 VGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE-SAAP--SLRYLTNSGGAMPRATLSRLRSFLPNAR 302 (515)
T ss_pred cCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC-CCcc--ceEEEEecCCcCCHHHHHHHHHHCCCCe
Confidence 999999988899999999999999999999999999998753221 2333 8999999999999999999884 5 789
Q ss_pred eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccc
Q 044926 333 VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGY 412 (569)
Q Consensus 333 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 412 (569)
+++.||+||++....... .........+|.+.+++ +++|+|+ ++..++.+ +.|||+++|+.++.||
T Consensus 303 ~~~~YG~tE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~~~-~~~~~~~~--~~Gel~v~g~~~~~gy 368 (515)
T TIGR03098 303 LFLMYGLTEAFRSTYLPP----------EEVDRRPDSIGKAIPNA-EVLVLRE-DGSECAPG--EEGELVHRGALVAMGY 368 (515)
T ss_pred EeeeeccccccceEeccc----------ccccCCCCCcceecCCC-EEEEECC-CCCCCCCC--CceEEEEcCchhhccc
Confidence 999999999875443211 11122345789999998 9999996 67777766 8999999999999999
Q ss_pred cCCccccccccCC-----------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 413 LKDPIGTRKCMTD-----------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 413 ~~~~~~~~~~~~~-----------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
++++..+...|.. ++||+|||+|++++||++++.||.+|+|+.+|.+|+|.+||+++.++|.|.+++|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~ 448 (515)
T TIGR03098 369 WNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAF 448 (515)
T ss_pred cCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEE
Confidence 9998877665532 34899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
+.+++..|+.++++++..++.. .+.++++++++++++++++|..++++++||+|.+||++|++|++
T Consensus 449 ~~~~~~~g~~~~~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 449 GVPDPTLGQAIVLVVTPPGGEE--LDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred eccCcccCceEEEEEEeCCCCC--CCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 9999888999988888765544 67889999999999999999999999999999999999999974
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-66 Score=543.05 Aligned_cols=504 Identities=23% Similarity=0.337 Sum_probs=418.8
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
|...++.++|+++++ |+++|+++.++.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 22 ~~~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v 99 (536)
T PRK10946 22 WQDLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA 99 (536)
T ss_pred ecCccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeE
Confidence 667899999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
++++.+.....++.++++.++++.++++.... ........... ....+.+.....
T Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~---------------- 159 (536)
T PRK10946 100 PVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHS----SLRVVLLLNDDG---------------- 159 (536)
T ss_pred EecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCC----CceEEEEecCCC----------------
Confidence 88877778888899999999999999986531 11111211111 122222222100
Q ss_pred ccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhh
Q 044926 166 FFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g 245 (569)
...+.+++....... ......++++++++|||||||.||+|.++|+++...+......+++..+|++++..|++|.++
T Consensus 160 -~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~ 237 (536)
T PRK10946 160 -EHSLDDAINHPAEDF-TATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYP 237 (536)
T ss_pred -CccHHHHhhCccccc-ccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCcccccc
Confidence 122333333322211 122345789999999999999999999999999998888888889999999999999999988
Q ss_pred hhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 246 WCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 246 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
+.. .+.++..|+++++.+.+++..++++++++++|++.++|.++..+++..........+.+++.+++||+++++.+.
T Consensus 238 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~ 317 (536)
T PRK10946 238 MSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLA 317 (536)
T ss_pred chhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHH
Confidence 764 577788999998888889999999999999999999999999998764332222233489999999999999999
Q ss_pred HHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCccc-ccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 324 LRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKT-TALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 324 ~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
+.+. .+++++++.||+||++.... .... .......++|.|+ +++ .++|+|+ +++.++.| +.|||
T Consensus 318 ~~~~~~~g~~~~~~YG~tE~~~~~~-~~~~---------~~~~~~~~~G~p~~~~~-~v~i~d~-~~~~~~~g--~~Gel 383 (536)
T PRK10946 318 RRIPAELGCQLQQVFGMAEGLVNYT-RLDD---------SDERIFTTQGRPMSPDD-EVWVADA-DGNPLPQG--EVGRL 383 (536)
T ss_pred HHHHHhcCCeEEEeecccccceeee-cCCC---------ccccccccCCcccCCCc-eEEEECC-CCCCCCCC--CccEE
Confidence 9987 57999999999999643322 1111 1112345788888 455 8999996 67888877 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++|+.++.||+++++.+...|..++||+|||+|++++||++++.||.+|+++.+|+++++.+||..|.++++|.+++++
T Consensus 384 ~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~ 463 (536)
T PRK10946 384 MTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALV 463 (536)
T ss_pred EEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEE
Confidence 99999999999999999999898799999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
+.+++..|+.++++++..++ ...+++++++++. ++.|++|..++++++||+|++||++|++|++++.+...
T Consensus 464 ~~~~~~~g~~~~a~vv~~~~----~~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~~ 535 (536)
T PRK10946 464 SMEDELMGEKSCAFLVVKEP----LKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRAS 535 (536)
T ss_pred cCCCcccCceEEEEEEeCCC----CCHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhcc
Confidence 99998888888999887654 5678999999886 99999999999999999999999999999999887653
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-67 Score=555.33 Aligned_cols=519 Identities=17% Similarity=0.195 Sum_probs=398.9
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeC--C---eeeeHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEEcCC
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYN--N---ITYTWSDTHHRCLQLASSLLSI---GISRG-----------HVVSVVSPN 73 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~--~---~~~Ty~el~~~v~~~A~~L~~~---g~~~g-----------d~V~i~~~n 73 (569)
.-|+.++|.++++.+|+++|+.+. + +.+||+||.++++++|.+|.+. |+++| |+|+|+++|
T Consensus 60 ~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 60 YKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred cchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 568999999999999999999873 2 6899999999999999999974 99998 999999999
Q ss_pred chHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCccccc
Q 044926 74 VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVS 153 (569)
Q Consensus 74 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (569)
+++|+++++||+++|++.||+++.++.+++.++|++++++++|++.+..+.+.+.....+. ++.++.++........
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~---l~~ii~~~~~~~~~~~ 216 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPH---LKKLIILDTLIKSKEI 216 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCC---ceEEEEECCCCccccc
Confidence 9999999999999999999999999999999999999999999987777666555443332 4667776542110000
Q ss_pred c-------------cCCCC-----------------------CC----------------CCCcccchhhHhhhcCCCCc
Q 044926 154 S-------------QSHHP-----------------------NI----------------SDDQFFSTYESLVAKGDPEF 181 (569)
Q Consensus 154 ~-------------~~~~~-----------------------~~----------------~~~~~~~~~~~~~~~~~~~~ 181 (569)
. ..... .. ..+.....++++.+.... .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 295 (746)
T PTZ00342 217 NINKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT-N 295 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc-C
Confidence 0 00000 00 000011123333222111 1
Q ss_pred ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccC--CCCCCCEEEEecCchhhhhhhHHHHHHHhCceE
Q 044926 182 EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW--SVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTN 259 (569)
Q Consensus 182 ~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~--~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~ 259 (569)
....+..++|++.|+|||||||.||||++||++++..+....... .....|++++.+|++|++++...+.+++.|+++
T Consensus 296 ~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i 375 (746)
T PTZ00342 296 YKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTI 375 (746)
T ss_pred CCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEE
Confidence 112235678999999999999999999999999988776544321 223568999999999999998878888899998
Q ss_pred EEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcC--------CCCCC-------------------------------
Q 044926 260 ICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY--------RDPDK------------------------------- 300 (569)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~--------~~~~~------------------------------- 300 (569)
++.+. ++..+++.|.+++||+++++|.+++.|.+. ....+
T Consensus 376 ~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~k 454 (746)
T PTZ00342 376 NIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSK 454 (746)
T ss_pred EEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 88765 899999999999999999999999988752 10000
Q ss_pred --CCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCccc-cc
Q 044926 301 --KPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKT-TA 376 (569)
Q Consensus 301 --~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 376 (569)
..+ .+++|.+++||+++++++.+.++ .+|++++++||+||+++.++..... .....++|.|. ++
T Consensus 455 ir~~l-g~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~-----------~~~~gsvG~p~~pg 522 (746)
T PTZ00342 455 IKDKV-NPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHAD-----------DNNTESIGGPISPN 522 (746)
T ss_pred HHHhh-CCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCC-----------CCCcccccCcCCCc
Confidence 000 14899999999999999999998 5799999999999997665543211 12346889998 88
Q ss_pred ceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEE-e
Q 044926 377 LTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVII-S 455 (569)
Q Consensus 377 ~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~-~ 455 (569)
+ +++|+|.+++.....+ ..|||+++||+++.|||++|+.|...|..+|||+|||+|++++||++++.||.+|+|| .
T Consensus 523 ~-e~ki~d~~~~~~~~~~--~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls 599 (746)
T PTZ00342 523 T-KYKVRTWETYKATDTL--PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLS 599 (746)
T ss_pred E-EEEEecccccccCCCC--CceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeC
Confidence 7 9999986544333333 4699999999999999999999999998899999999999999999999999999999 5
Q ss_pred CceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCC----------------CCCCC----------HH
Q 044926 456 GGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGS----------------KSKPT----------EK 509 (569)
Q Consensus 456 ~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~----------------~~~~~----------~~ 509 (569)
+|++|+|.+||+++.++|.|.+++|++.+.. ..++++|++.... ..... ..
T Consensus 600 ~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 676 (746)
T PTZ00342 600 QGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNN 676 (746)
T ss_pred CCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccH
Confidence 8999999999999999999999999997432 3577888765410 00000 01
Q ss_pred HHHH----HH-----hccCCCCccccEEEEec-cc----CCCCCCcccHHHHHHHHHhc
Q 044926 510 EMIE----YC-----RGRLPHYMVPKTVVFMD-EL----PKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 510 ~l~~----~l-----~~~l~~~~~p~~~~~~~-~i----P~t~~GKi~r~~l~~~~~~~ 554 (569)
++++ .+ +..|..+.+++.|.++. ++ -+|++-|+.|+.+.+.|+..
T Consensus 677 ~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~ 735 (746)
T PTZ00342 677 IYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFF 735 (746)
T ss_pred HHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHH
Confidence 1122 22 23688999999888874 33 28999999999999988854
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=542.37 Aligned_cols=513 Identities=28% Similarity=0.452 Sum_probs=420.3
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEe--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~--~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
...|+.++|.+.++++|+++|+++ .++.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 16 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~ 95 (558)
T PRK12583 16 LTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA 95 (558)
T ss_pred ccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCC
Confidence 456899999999999999999988 457899999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCC-------CC---CCCCEEEEeCCCcccccc
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPP-------DL---KPPPLVLISDDDDAAVSS 154 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~ 154 (569)
+++++++..+.+++.+++++++++++|+++... ..+.+....... .. ....++........
T Consensus 96 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 171 (558)
T PRK12583 96 ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPP---- 171 (558)
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCc----
Confidence 999999999999999999999999999986532 112222111100 00 01122222111100
Q ss_pred cCCCCCCCCCcccchhhHhhhcCCCC-----cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCC
Q 044926 155 QSHHPNISDDQFFSTYESLVAKGDPE-----FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVP 229 (569)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~ 229 (569)
....+++........ ........++++++++|||||||.||+|.++|+++..++......+++.
T Consensus 172 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 240 (558)
T PRK12583 172 -----------GFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT 240 (558)
T ss_pred -----------cccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC
Confidence 012333333222111 1111224567899999999999999999999999998888888888999
Q ss_pred CCCEEEEecCchhhhhhhH-HHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCC
Q 044926 230 TQPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAK 307 (569)
Q Consensus 230 ~~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 307 (569)
.+|++++..|++|.+|... .+.++..|+++++.. .+++..+++.++++++|++.++|+++..+.+.......++. +
T Consensus 241 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~--~ 318 (558)
T PRK12583 241 EHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLS--S 318 (558)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCch--h
Confidence 9999999999999999876 455566677766543 57899999999999999999999999988876544444444 9
Q ss_pred CceEEEeCCCCcHHHHHHHH-hcC-CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCC
Q 044926 308 PVHLVTAGAPPPAAVLLRTE-SLG-FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDP 385 (569)
Q Consensus 308 l~~~~~~g~~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~ 385 (569)
+|.+++||+++++.+.+++. +++ ..+++.||+||+++++..+..... ......++|.|.++. .++|+|+
T Consensus 319 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~~~i~d~ 389 (558)
T PRK12583 319 LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADD--------LERRVETVGRTQPHL-EVKVVDP 389 (558)
T ss_pred heEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccc--------cccccCCCCccCCCC-eEEEECC
Confidence 99999999999999999887 554 579999999999887665432211 112345789999998 9999998
Q ss_pred CCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHH
Q 044926 386 KSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465 (569)
Q Consensus 386 ~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~i 465 (569)
+ +..++.| +.|||+++|+.++.||++++..+...+..++||+|||+|++++||++++.||.+|+|+++|.+|++.+|
T Consensus 390 ~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~I 466 (558)
T PRK12583 390 D-GATVPRG--EIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREI 466 (558)
T ss_pred C-CCCCCCC--CeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHH
Confidence 6 8888877 899999999999999999999888877668999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHH
Q 044926 466 ESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKF 545 (569)
Q Consensus 466 E~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~ 545 (569)
|+.|.++++|.+++|++.+++..++.++++++..++.. ...++++++++++|+.+++|..++++++||+|++||++|+
T Consensus 467 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~ 544 (558)
T PRK12583 467 EEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA--ASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKF 544 (558)
T ss_pred HHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC--CCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHH
Confidence 99999999999999999998887888899998876654 5778999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 044926 546 VLREIAENMG 555 (569)
Q Consensus 546 ~l~~~~~~~~ 555 (569)
+|+++..+..
T Consensus 545 ~L~~~~~~~~ 554 (558)
T PRK12583 545 RMREISIEEL 554 (558)
T ss_pred HHHHHHHhhc
Confidence 9999876643
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=562.71 Aligned_cols=477 Identities=23% Similarity=0.308 Sum_probs=396.6
Q ss_pred chHHHHHHHHHH--cCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 15 TPLVFLERAATV--YGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 15 tl~~~l~~~a~~--~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
|+.++|.+++.. +||++|++.. +.+||+||+++++++|..|.+.|+++||+|+|+++|+++++++++||+++|++++
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~v 83 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAF 83 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEE
Confidence 789999999886 7999999875 4899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|++|.++.+++.+++++++++++|++.+..+.+.. ..+. . ..+
T Consensus 84 pi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-----------~~~~--~------------------------~~~ 126 (705)
T PRK06060 84 LANPELHRDDHALAARNTEPALVVTSDALRDRFQP-----------SRVA--E------------------------AAE 126 (705)
T ss_pred ecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc-----------cccc--h------------------------hhh
Confidence 99999999999999999999999998654432211 0000 0 000
Q ss_pred hhhcCC-CCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhh-ccCCCCCCCEEEEecCchhhhhhhH-H
Q 044926 173 LVAKGD-PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL-SDWSVPTQPVYLWTLPMFHSNGWCF-P 249 (569)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~-~~~~~~~~d~~~~~~pl~~~~g~~~-~ 249 (569)
++.... .......+..++++++++|||||||.||+|.++|+++........ ..+++...|++++..|++|.+++.. .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 206 (705)
T PRK06060 127 LMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSV 206 (705)
T ss_pred hhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHH
Confidence 000000 000011124567899999999999999999999999987765553 4577889999999999999988754 5
Q ss_pred HHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-
Q 044926 250 WAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE- 327 (569)
Q Consensus 250 ~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~- 327 (569)
+.++..|+++++.+ .+++..++..+.++++|+++++|+++..+++.... ..++ ++|.+++||+++++++.+++.
T Consensus 207 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~--slr~i~~gGe~l~~~~~~~~~~ 282 (705)
T PRK06060 207 WFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP--DSFR--SLRCVVSAGEALELGLAERLME 282 (705)
T ss_pred HHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc--cccc--ceeEEEEecCcCCHHHHHHHHH
Confidence 67788899988876 47888999999999999999999999999875432 2334 899999999999999999887
Q ss_pred hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 328 SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 328 ~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
.+ ++++++.||+||++..+..+... .....++|.|.+++ +++|+|+ ++..++.| +.||||++|+
T Consensus 283 ~~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~iG~p~~~~-~v~i~d~-~g~~~~~g--~~GEl~i~g~ 347 (705)
T PRK06060 283 FFGGIPILDGIGSTEVGQTFVSNRVD-----------EWRLGTLGRVLPPY-EIRVVAP-DGTTAGPG--VEGDLWVRGP 347 (705)
T ss_pred HcCCCceEeeeeccccCceEEeccCC-----------CCCcCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEccc
Confidence 45 58999999999997655433211 11235689999998 9999998 57777777 8999999999
Q ss_pred cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCC
Q 044926 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDE 486 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 486 (569)
.++.||+++++.+. ..++||+|||+|++++||++++.||.+|+||++|++|++.+||.+|.+++.|.+++|++.+++
T Consensus 348 ~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~ 424 (705)
T PRK06060 348 AIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRES 424 (705)
T ss_pred hhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCc
Confidence 99999999987643 347899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEecCCCCC-CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 487 FWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 487 ~~~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
..++.++++|+..++... .....+++++++++|+.|++|..++++++||+|++||++|++|++.+
T Consensus 425 ~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 425 TGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred cCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 878888999887655331 11235788999999999999999999999999999999999999875
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=556.72 Aligned_cols=517 Identities=20% Similarity=0.252 Sum_probs=396.7
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeC-------C--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYN-------N--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~-------~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
..|+.++|.++++.+|+++|+... + +.+||+||.++++++|.+|.+.|+++||+|+|+++|+++|+++++|
T Consensus 42 ~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 121 (660)
T PLN02861 42 IDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (660)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 358999999999999999999641 1 4799999999999999999999999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|+++||+++.++.+++.+++++++++++|++.+..+.+......... .++.++.+++...... .. . ...
T Consensus 122 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~--~~--~-~~~ 194 (660)
T PLN02861 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVSFGDVSSEQK--EE--A-EEL 194 (660)
T ss_pred HHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCC--CCEEEEEECCCChhhh--hh--h-hcC
Confidence 999999999999999999999999999999999987655544433322211 1345555543211000 00 0 000
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC-----CCCCCEEEEec
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS-----VPTQPVYLWTL 238 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~-----~~~~d~~~~~~ 238 (569)
......+.+++....... ...+..++|+++|+|||||||.||||.+||++++..+......++ +..+|++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~-~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~l 273 (660)
T PLN02861 195 GVSCFSWEEFSLMGSLDC-ELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYL 273 (660)
T ss_pred CcEEEEHHHHHHhCcccC-CCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEEC
Confidence 111245666554332211 112346789999999999999999999999999887766554443 46789999999
Q ss_pred CchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCC---------------------
Q 044926 239 PMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD--------------------- 297 (569)
Q Consensus 239 pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~--------------------- 297 (569)
|++|.+++...+.+++.|+++++. ..++..+++.|++++||+++++|.++..+.+...
T Consensus 274 Pl~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~ 352 (660)
T PLN02861 274 PLAHVYDQVIETYCISKGASIGFW-QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYK 352 (660)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 999999987766678888888776 4689999999999999999999999998864100
Q ss_pred --------CC---CCCC----------Cc-CCCceEEEeCCCCcHHHHHHHHhcC-Ceeeecccccccccceeecccccc
Q 044926 298 --------PD---KKPL----------KL-AKPVHLVTAGAPPPAAVLLRTESLG-FKVSHGYGLTETGGIVVSCAWKRN 354 (569)
Q Consensus 298 --------~~---~~~~----------~~-~~l~~~~~~g~~l~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~~ 354 (569)
.. .... .+ +++|.+++||+++++++.+.++.++ ..++++||+||+++.++.....
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-- 430 (660)
T PLN02861 353 LGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIAN-- 430 (660)
T ss_pred HHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccc--
Confidence 00 0000 01 3789999999999999866555565 4799999999997655432111
Q ss_pred cccCcHHHHhhhhcccCcccccceeeEEeCC-CCCc-ccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeec
Q 044926 355 WNLLPAAEKAKLKARQGVKTTALTEVDVLDP-KSGV-SAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTG 432 (569)
Q Consensus 355 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~-~~~~-~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 432 (569)
......++|.|.+++ +++|+|. +.|. ....+ +.|||+++||+++.|||++|+.+...|. +|||+||
T Consensus 431 --------~~~~~gsvG~p~p~~-ev~i~d~~~~g~~~~~~~--~~GEi~vrGp~v~~GY~~~pe~T~~~f~-dGw~~TG 498 (660)
T PLN02861 431 --------VFSMVGTVGVPMTTI-EARLESVPEMGYDALSDV--PRGEICLRGNTLFSGYHKRQDLTEEVLI-DGWFHTG 498 (660)
T ss_pred --------cCCCCCCccCccCce-EEEEEEccccCcccCCCC--CceeEEEcCCcccccccCCHHHHHhhhh-ccCcccC
Confidence 011235789999998 9999983 3332 22223 5799999999999999999999999996 8999999
Q ss_pred ceEEEecCCcEEEeccCCCeEEe-CceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCC------CC-
Q 044926 433 DVGVMHSDGYLEIKDRSKDVIIS-GGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGS------KS- 504 (569)
Q Consensus 433 D~~~~~~dg~l~~~GR~~~~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~------~~- 504 (569)
|+|++|+||++++.||.+|+||. +|++|+|.+||++|.++|.|.+++|++.+. ++.++++|++.... ..
T Consensus 499 Dlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~ 575 (660)
T PLN02861 499 DIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNN 575 (660)
T ss_pred ceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcC
Confidence 99999999999999999999995 899999999999999999999999999863 45688888875320 00
Q ss_pred -CCCH----------HHHHHHHhc-----cCCCCccccEEEEec-cc-----CCCCCCcccHHHHHHHHHhcC
Q 044926 505 -KPTE----------KEMIEYCRG-----RLPHYMVPKTVVFMD-EL-----PKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 505 -~~~~----------~~l~~~l~~-----~l~~~~~p~~~~~~~-~i-----P~t~~GKi~r~~l~~~~~~~~ 555 (569)
.... ..+.+.+++ .++.+..++.+.+++ .+ .+|+++|+.|+.+.+.|++..
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I 648 (660)
T PLN02861 576 KTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCI 648 (660)
T ss_pred CCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHH
Confidence 0011 224444432 488899999888865 56 799999999999999988754
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=554.88 Aligned_cols=510 Identities=21% Similarity=0.259 Sum_probs=403.9
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNN---------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~---------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 82 (569)
...|+.++|+++++.+|+++|+++.+ +.+||+||.++++++|.+|.+. +++||+|+++++|++++++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 44789999999999999999998732 5799999999999999999987 8999999999999999999999
Q ss_pred HhhhccceEeec-cCCCC--HHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 83 AVPFAAAVLNTI-NTRLD--ARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 83 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
||+++|++++|+ ++..+ .+++.+++++++++++|++.+..+.+........... ...++.++....
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------- 166 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKE-RPRVIAVDAVPD---------- 166 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccc-cceEEEcccccc----------
Confidence 999999999999 55554 6789999999999999999876655544332221100 123332221100
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecC
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p 239 (569)
. ... . ....+..++++++|+|||||||.||||.++|+++...+......+++..+|++++.+|
T Consensus 167 ---------~----~~~---~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~P 229 (631)
T PRK07769 167 ---------E----VGA---T-WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLP 229 (631)
T ss_pred ---------c----ccc---c-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCC
Confidence 0 000 0 0001245679999999999999999999999999988877777788899999999999
Q ss_pred chhhhhhhHHHHHHHhCceEEEecc--C--CHHHHHHHHHHhCc---ceeechhHHHHHHHcC---CCCCCCCCCcCCCc
Q 044926 240 MFHSNGWCFPWAMAAVGGTNICIRK--F--DASIIFDLIRRHGV---THMCGAPVVLNMLSNY---RDPDKKPLKLAKPV 309 (569)
Q Consensus 240 l~~~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~l~~~~~---t~~~~~P~~l~~l~~~---~~~~~~~~~~~~l~ 309 (569)
++|.+|+...+.+++.|++++++++ + ++..+++.+.++++ +++..+|.++..+... .........++++|
T Consensus 230 l~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr 309 (631)
T PRK07769 230 FFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVK 309 (631)
T ss_pred CcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhhee
Confidence 9999999887788888999888753 4 88999999999886 7889999887766543 11111122344999
Q ss_pred eEEEeCCCCcHHHHHHHHh-c---C---Ceeeecccccccccceeeccccccccc--CcHHH-------------H-hhh
Q 044926 310 HLVTAGAPPPAAVLLRTES-L---G---FKVSHGYGLTETGGIVVSCAWKRNWNL--LPAAE-------------K-AKL 366 (569)
Q Consensus 310 ~~~~~g~~l~~~~~~~~~~-~---~---~~i~~~YG~tE~~~~~~~~~~~~~~~~--~~~~~-------------~-~~~ 366 (569)
.+++||+++++++.+++.+ + | ..+++.||+||+++.+........... ..... . ...
T Consensus 310 ~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 389 (631)
T PRK07769 310 GLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVA 389 (631)
T ss_pred eEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCcee
Confidence 9999999999999998874 4 3 359999999998765554322111000 00000 0 011
Q ss_pred hcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCC-----------------CCee
Q 044926 367 KARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD-----------------DGWF 429 (569)
Q Consensus 367 ~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-----------------~~~~ 429 (569)
..++|.+.++. .++|+|++++..++.| +.|||+++||+++.||+++++.+...|.. ++||
T Consensus 390 ~~s~G~~~~~~-~~~ivd~~~g~~~~~g--e~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~ 466 (631)
T PRK07769 390 QVSAGKVGVSE-WAVIVDPETASELPDG--QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWV 466 (631)
T ss_pred EEeCCCcCCCc-EEEEEcCCCCcCCCCC--CEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCee
Confidence 24789999888 9999998888888887 89999999999999999999988877742 4899
Q ss_pred eecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHc-CCCcce--eEEEecCC-------------------CC
Q 044926 430 YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYS-NPAVNE--AAVVARPD-------------------EF 487 (569)
Q Consensus 430 ~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~-~~~i~~--~~v~~~~~-------------------~~ 487 (569)
+|||+|+++ ||+++++||.+|+||++|++|+|.+||++|.+ ||.|.+ ++|++.++ +.
T Consensus 467 ~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~ 545 (631)
T PRK07769 467 RTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPED 545 (631)
T ss_pred eccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCC
Confidence 999999995 99999999999999999999999999999996 899998 88888887 55
Q ss_pred CCceeEEEEEecCCCCCCCCHHHHHHHHhccCCC-Cc-cccEEEEec--ccCCCCCCcccHHHHHHHHHhcC
Q 044926 488 WGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH-YM-VPKTVVFMD--ELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 488 ~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~-~~-~p~~~~~~~--~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+|+.++++|++.++.. ..+.++|.+++++++.. +. .|..+++++ +||+|++|||+|++|++.+.+..
T Consensus 546 ~ge~~~a~v~~~~~~~-~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~ 616 (631)
T PRK07769 546 TSEQLVIVAERAPGAH-KLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGS 616 (631)
T ss_pred CCccEEEEEEecCccc-cccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCC
Confidence 7888999999887632 15778999999999985 56 588888886 69999999999999999887654
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-66 Score=536.29 Aligned_cols=480 Identities=28% Similarity=0.383 Sum_probs=401.9
Q ss_pred HHHHHHcCCCCeEEe--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCC
Q 044926 21 ERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98 (569)
Q Consensus 21 ~~~a~~~p~~~al~~--~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 98 (569)
+.++..+||++|+.+ .++.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 81 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence 457788999999987 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcCC
Q 044926 99 DARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGD 178 (569)
Q Consensus 99 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
+.+++.+++++++++++|+++...... ...+ .++++.....
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~-------------~~~~--------------------------~~~~~~~~~~ 122 (488)
T PRK09088 82 SASELDALLQDAEPRLLLGDDAVAAGR-------------TDVE--------------------------DLAAFIASAD 122 (488)
T ss_pred CHHHHHHHHHhCCCCEEEEcchhhccc-------------cccc--------------------------chhhhhhhcc
Confidence 999999999999999999986532200 0000 0011100000
Q ss_pred CC-cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHH-HHHHhC
Q 044926 179 PE-FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW-AMAAVG 256 (569)
Q Consensus 179 ~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~-~~~~~g 256 (569)
.. .........+++++++|||||||.||+|.++|+++...+........+..+|++++..|++|.+++...+ ..+..|
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g 202 (488)
T PRK09088 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVG 202 (488)
T ss_pred ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcC
Confidence 00 0001123457899999999999999999999999988777777667788999999999999999987644 456677
Q ss_pred ceEEEeccCCHHHHHHHHH--HhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCeee
Q 044926 257 GTNICIRKFDASIIFDLIR--RHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVS 334 (569)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~--~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i~ 334 (569)
+++++.+.+++..++..+. ++++|+++++|.++..+.+........++ +++.+++||++++....+.+.+.+++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~l~~~~~gG~~~~~~~~~~~~~~g~~v~ 280 (488)
T PRK09088 203 GSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALR--HLTALFTGGAPHAAEDILGWLDDGIPMV 280 (488)
T ss_pred CEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccc--cceEEEecCCCCCHHHHHHHHHhCCcee
Confidence 7777777788999998886 48999999999999999876543344444 8999999999999988888776689999
Q ss_pred ecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccC
Q 044926 335 HGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLK 414 (569)
Q Consensus 335 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 414 (569)
+.||+||++++......+ ........++|.+.+++ +++|+|+ ++..++.+ +.|||+++|++++.||++
T Consensus 281 ~~YG~TE~~~~~~~~~~~--------~~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gY~~ 348 (488)
T PRK09088 281 DGFGMSEAGTVFGMSVDC--------DVIRAKAGAAGIPTPTV-QTRVVDD-QGNDCPAG--VPGELLLRGPNLSPGYWR 348 (488)
T ss_pred eeecccccccccccCCCc--------ccccccCCccccCCCCc-EEEEECC-CCCCCcCC--CceEEEEECCccchhhcC
Confidence 999999998654321110 00111235789999998 9999996 67777776 889999999999999999
Q ss_pred CccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEE
Q 044926 415 DPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCA 494 (569)
Q Consensus 415 ~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~ 494 (569)
+++.+...+..++||+|||+|+++++|.+++.||.+|+|+.+|.+++|.+||++|.++++|.+++|++.+++..|+..++
T Consensus 349 ~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 428 (488)
T PRK09088 349 RPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYL 428 (488)
T ss_pred ChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEE
Confidence 99988888877899999999999999999999999999999999999999999999999999999999998877888888
Q ss_pred EEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 495 FVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 495 ~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+|++.++.. .+.+++.++++++++.+++|..++++++||+|++||++|++|++++.+..
T Consensus 429 ~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~~ 487 (488)
T PRK09088 429 AIVPADGAP--LDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAGR 487 (488)
T ss_pred EEEECCCCC--CCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhcC
Confidence 888876544 57789999999999999999999999999999999999999999987653
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=537.69 Aligned_cols=509 Identities=27% Similarity=0.365 Sum_probs=426.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.++.|+.++|.++++++|+++|+++.++.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 88 (524)
T PRK06188 9 HSGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR 88 (524)
T ss_pred cCCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccc-cHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFH-SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++++|..+.+++.++++.++++.+++++. .............. ..+++.+..... ...
T Consensus 89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----------------~~~ 148 (524)
T PRK06188 89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPS---LKHVLTLGPVPD-----------------GVD 148 (524)
T ss_pred EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCC---ceEEEEeCCccc-----------------hhh
Confidence 999999999999999999999999999876 33333322221111 223333332110 011
Q ss_pred hhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHH
Q 044926 170 YESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP 249 (569)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~ 249 (569)
+.+....... ........++++++++|||||||.||+|.++|.++...+......+++..+|++++..|++|.+++. .
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~ 226 (524)
T PRK06188 149 LLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-F 226 (524)
T ss_pred HHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-H
Confidence 1111111111 1111123455799999999999999999999999999888888888999999999999999998875 4
Q ss_pred HHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
+..++.|+++++.+.+++..+++.++++++|++.++|+++..+++........+. ++|.+++||+++++.....+. .
T Consensus 227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~--~lr~~~~gg~~~~~~~~~~~~~~ 304 (524)
T PRK06188 227 LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLS--SLETVYYGASPMSPVRLAEAIER 304 (524)
T ss_pred HHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCc--ceeEEEEcCCCCCHHHHHHHHHH
Confidence 6778899999999989999999999999999999999999999988755555555 999999999999999887766 6
Q ss_pred cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcc
Q 044926 329 LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCI 408 (569)
Q Consensus 329 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 408 (569)
++..+++.||+||++..+..+..... .........++|.|.+++ .++|+|+ ++.+++.| +.|||+++|+.+
T Consensus 305 ~~~~~~~~YG~tE~~~~~~~~~~~~~-----~~~~~~~~~~~G~p~~g~-~v~i~~~-~~~~~~~g--~~Gel~v~~~~~ 375 (524)
T PRK06188 305 FGPIFAQYYGQTEAPMVITYLRKRDH-----DPDDPKRLTSCGRPTPGL-RVALLDE-DGREVAQG--EVGEICVRGPLV 375 (524)
T ss_pred hCchhhheeCccccCCceeecCchhc-----cccccccCCccccccCCc-EEEEEcC-CCCCCCCC--CeeEEEEECcch
Confidence 78889999999999766554322111 001122345689999998 9999997 58888877 899999999999
Q ss_pred cccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCC
Q 044926 409 MLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFW 488 (569)
Q Consensus 409 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~ 488 (569)
+.||++++..+...+. ++||+|||+|++++||.+++.||.+++++.+|++++|.+||.+|.++++|.+++|++.+++..
T Consensus 376 ~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~ 454 (524)
T PRK06188 376 MDGYWNRPEETAEAFR-DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKW 454 (524)
T ss_pred hhhhcCChHHhhhhhc-CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCc
Confidence 9999999988888886 899999999999999999999999999999999999999999999999999999999988887
Q ss_pred CceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 489 GETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
++.+++++++.+... ...+++++++++.++.+++|..++++++||+|++||++|++|+++|.+..
T Consensus 455 ~~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~~ 519 (524)
T PRK06188 455 GEAVTAVVVLRPGAA--VDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEGR 519 (524)
T ss_pred CceEEEEEEECCCCC--CCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhhc
Confidence 888999998876544 56789999999999999999999999999999999999999999986654
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=549.72 Aligned_cols=512 Identities=19% Similarity=0.189 Sum_probs=396.5
Q ss_pred Cch-HHHHHHHHHHcCCCCeEEeCC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 14 LTP-LVFLERAATVYGDSPSIIYNN--------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 14 ~tl-~~~l~~~a~~~p~~~al~~~~--------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
+++ .++|++++..+|+++|+++.+ +.+||+||.++++++|+.|++.|+++||+|+++++|++++++++|||
T Consensus 174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~ 253 (728)
T PLN03052 174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI 253 (728)
T ss_pred eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 444 346777666789999999854 37999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccH------HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCC
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR------ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHH 158 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (569)
+++|++++|++|.++.+++.+++++++++++|+++... +......... ...++++....... .
T Consensus 254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~-----~~~~iv~~~~~~~~----~-- 322 (728)
T PLN03052 254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK-----APKAIVLPADGKSV----R-- 322 (728)
T ss_pred HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc-----CCcEEEEeCCCCcc----c--
Confidence 99999999999999999999999999999999986532 1122221111 12344443221000 0
Q ss_pred CCCCCCcccchhhHhhhcCCCC---c-ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEE
Q 044926 159 PNISDDQFFSTYESLVAKGDPE---F-EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY 234 (569)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~ 234 (569)
..... ....|++++...... . ........+++++|+|||||||.||||+++|.+++.........+++.++|++
T Consensus 323 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~ 400 (728)
T PLN03052 323 VKLRE--GDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIV 400 (728)
T ss_pred ccccc--CCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEE
Confidence 00000 013466655432111 0 01111345899999999999999999999999987766655556788999999
Q ss_pred EEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 235 LWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 235 ~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
++..|+.|+++....+.+++.|+++++.+. .++..++++++++++|++.++|+++..|.+.......+++ ++|.+++
T Consensus 401 ~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dls--sLr~i~s 478 (728)
T PLN03052 401 CWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWS--SIRCFGS 478 (728)
T ss_pred EECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChh--heeEEEe
Confidence 999999999998777788999999999864 4567899999999999999999999999876533344444 9999999
Q ss_pred eCCCCcHHHHHHHH-hcC-CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCccc
Q 044926 314 AGAPPPAAVLLRTE-SLG-FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSA 391 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~ 391 (569)
+|++++++...++. .++ .++++.||+||+++.+...... .......+|.|.++. +++|+|+ +|+++
T Consensus 479 ~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~----------~~~~~g~~g~p~~g~-~v~v~d~-~g~~v 546 (728)
T PLN03052 479 TGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLL----------QPQAFAAFSTPAMGC-KLFILDD-SGNPY 546 (728)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCC----------CCCCCCccccCCCCc-eEEEECC-CCCCC
Confidence 99999999887776 344 5799999999997654432110 011235688999999 9999996 78888
Q ss_pred CCCCCceeEEEEecCc--ccccccCCccccccccC------CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHH
Q 044926 392 KRDGSTLGEIVLRGGC--IMLGYLKDPIGTRKCMT------DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSV 463 (569)
Q Consensus 392 ~~~~~~~Gel~v~~~~--~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~ 463 (569)
+.|..+.|||++.++. ...+|+++.. ....|. +..||+|||++++++||+++++||+||+||++|++|++.
T Consensus 547 ~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~ 625 (728)
T PLN03052 547 PDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSV 625 (728)
T ss_pred CCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHH
Confidence 7763347999998652 3356666532 222221 233899999999999999999999999999999999999
Q ss_pred HHHHHHH-cCCCcceeEEEecCCCCCC-ceeEEEEEec--CCCCCCCCHHHHHH----HHhccCCCCccccEEEEecccC
Q 044926 464 EVESVLY-SNPAVNEAAVVARPDEFWG-ETPCAFVSLK--EGSKSKPTEKEMIE----YCRGRLPHYMVPKTVVFMDELP 535 (569)
Q Consensus 464 ~iE~~l~-~~~~i~~~~v~~~~~~~~~-~~~~~~v~~~--~~~~~~~~~~~l~~----~l~~~l~~~~~p~~~~~~~~iP 535 (569)
|||++|. .+|.|.+++|++.+++..| +.++++|++. ++.. .+.++|++ ++++++++++.|..|+++++||
T Consensus 626 EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~--~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP 703 (728)
T PLN03052 626 EIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN--PDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFP 703 (728)
T ss_pred HHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCC--CCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCC
Confidence 9999995 7899999999999988766 7899999987 4433 34445554 5677888999999999999999
Q ss_pred CCCCCcccHHHHHHHHHhcC
Q 044926 536 KTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 536 ~t~~GKi~r~~l~~~~~~~~ 555 (569)
+|.+||++|+.|++++.+..
T Consensus 704 ~T~sGKi~Rr~Lr~~~~~~~ 723 (728)
T PLN03052 704 RTASNKVMRRVLRQQLAQEL 723 (728)
T ss_pred CCCchHHHHHHHHHHHHhhh
Confidence 99999999999999887665
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=536.03 Aligned_cols=513 Identities=24% Similarity=0.334 Sum_probs=409.9
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
.++.++|.+++..+|+++|+.+.++.+||.||.++++++|..|.+. |+++||+|+++++|+++++++++||+++|++++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v 103 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 5899999999999999999999889999999999999999999985 999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCC-ccccc---c-------cCCCCCC
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDD-DAAVS---S-------QSHHPNI 161 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~-------~~~~~~~ 161 (569)
++++..+.+++.+++++++++++++++.....+........ ...++.....+ ..... . ....+..
T Consensus 104 ~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK12492 104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTG----IEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAY 179 (562)
T ss_pred ccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccC----ceEEEeechhhccccccchhccccccccccccccc
Confidence 99999999999999999999999998765544433322110 11111110000 00000 0 0000000
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC---------CCC-C
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS---------VPT-Q 231 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~---------~~~-~ 231 (569)
.. .....+++.............+...+++++++|||||||.||+|.++|+++..+.......+. +.. .
T Consensus 180 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (562)
T PRK12492 180 HL-PQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQ 258 (562)
T ss_pred CC-cccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCC
Confidence 00 011334444433222111112345679999999999999999999999999776655444332 223 3
Q ss_pred CEEEEecCchhhhhhhHH-HHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCc
Q 044926 232 PVYLWTLPMFHSNGWCFP-WAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV 309 (569)
Q Consensus 232 d~~~~~~pl~~~~g~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~ 309 (569)
+++++.+|++|.+++... +..+..|+..++.. +.++..+++.++++++|++.++|+++..+.+........+. ++|
T Consensus 259 ~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~--~lr 336 (562)
T PRK12492 259 EVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS--ALK 336 (562)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccccc--cee
Confidence 567889999999998653 44456677666553 46899999999999999999999999999887654444444 999
Q ss_pred eEEEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCC
Q 044926 310 HLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSG 388 (569)
Q Consensus 310 ~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~ 388 (569)
.+++||+++++.+.+.++ .+++++++.||+||+++++..+.... ......+|.|.++. .++|+|+ ++
T Consensus 337 ~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~p~~~~-~v~ivd~-~~ 404 (562)
T PRK12492 337 LTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGE----------LARLGTVGIPVPGT-ALKVIDD-DG 404 (562)
T ss_pred EEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcc----------cccCCccceecCCC-EEEEECC-CC
Confidence 999999999999999887 56999999999999987665443211 11235789999998 9999997 67
Q ss_pred cccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHH
Q 044926 389 VSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESV 468 (569)
Q Consensus 389 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~ 468 (569)
.+++.| +.|||+++|+.++.||+++++.+...|..++||+|||+|+++++|.+++.||.+|+|+.+|++|++.+||..
T Consensus 405 ~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~ 482 (562)
T PRK12492 405 NELPLG--ERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDV 482 (562)
T ss_pred CCCCCC--CceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHH
Confidence 778777 899999999999999999999998888778999999999999999999999999999999999999999999
Q ss_pred HHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 469 LYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 469 l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
|.+++.|.+++|++.++...++.++++++..+.. ...++++++++++++.+++|..++++++||+|++||++|++|+
T Consensus 483 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~ 559 (562)
T PRK12492 483 VMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG---LSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELR 559 (562)
T ss_pred HHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC---CCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHH
Confidence 9999999999999999887788888888765432 4678999999999999999999999999999999999999998
Q ss_pred HH
Q 044926 549 EI 550 (569)
Q Consensus 549 ~~ 550 (569)
++
T Consensus 560 ~~ 561 (562)
T PRK12492 560 DI 561 (562)
T ss_pred hh
Confidence 75
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=542.87 Aligned_cols=513 Identities=22% Similarity=0.245 Sum_probs=400.6
Q ss_pred CCCCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q 044926 6 PSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVP 85 (569)
Q Consensus 6 ~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~ 85 (569)
....+..+.|+.++|.+++..+|+++|+++.++.+||+||.++++++|..|.+.|+++||+|+++++|+.+++++++||+
T Consensus 29 ~~~~~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~ 108 (600)
T PRK08279 29 ALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLA 108 (600)
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 33455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 86 FAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
++|++++++++.++.+++.++++.++++++|++.+..+.+.+....... ...+...+...... ..
T Consensus 109 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~ 173 (600)
T PRK08279 109 KLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLAR----PPRLWVAGGDTLDD-----------PE 173 (600)
T ss_pred hcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcc----cceEEEecCccccc-----------cc
Confidence 9999999999999999999999999999999998877766555433221 22233322211000 00
Q ss_pred ccchhhHhhhcCCCC-cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhh
Q 044926 166 FFSTYESLVAKGDPE-FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~ 244 (569)
....+.+........ .........+++++++|||||||.||+|.++|+++..++......++++++|++++..|++|.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~ 253 (600)
T PRK08279 174 GYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNT 253 (600)
T ss_pred cHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhh
Confidence 011222211111111 1111234568999999999999999999999999999998888889999999999999999999
Q ss_pred hhhHHHHH-HHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 245 GWCFPWAM-AAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 245 g~~~~~~~-~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
++...+.+ +..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......... +++. ++|+.+++.++
T Consensus 254 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~--~l~~--~~g~~l~~~~~ 329 (600)
T PRK08279 254 GGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDH--RLRL--MIGNGLRPDIW 329 (600)
T ss_pred hHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCc--ceeE--EecCCCCHHHH
Confidence 99876554 5566666776779999999999999999999999999999876543333332 5664 34778999999
Q ss_pred HHHH-hcCC-eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccc----cceeeEEeCCCC--------Cc
Q 044926 324 LRTE-SLGF-KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTT----ALTEVDVLDPKS--------GV 389 (569)
Q Consensus 324 ~~~~-~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~i~d~~~--------~~ 389 (569)
+++. .++. .+++.||+||++..+.... ....++|.+.. +. .+...+.+. +.
T Consensus 330 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~--------------~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 394 (600)
T PRK08279 330 DEFQQRFGIPRILEFYAASEGNVGFINVF--------------NFDGTVGRVPLWLAHPY-AIVKYDVDTGEPVRDADGR 394 (600)
T ss_pred HHHHHHhCcceeeeeecccccceeecccC--------------CCCcccccccccccccc-eeeeeccCcCceeeCCCCc
Confidence 8887 5665 5999999999875332110 01123444333 22 222222212 22
Q ss_pred --ccCCCCCceeEEE--EecCcccccccCCccccccccC------CCCeeeecceEEEecCCcEEEeccCCCeEEeCcee
Q 044926 390 --SAKRDGSTLGEIV--LRGGCIMLGYLKDPIGTRKCMT------DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGEN 459 (569)
Q Consensus 390 --~~~~~~~~~Gel~--v~~~~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~ 459 (569)
.++.+ +.|||+ +.|+.++.|| +++..+...|. .++||+|||+|++++||.+++.||.+|+||++|++
T Consensus 395 ~~~~~~g--~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~ 471 (600)
T PRK08279 395 CIKVKPG--EVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGEN 471 (600)
T ss_pred cccCCCC--CceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcc
Confidence 23444 789998 7799999999 88777765542 35799999999999999999999999999999999
Q ss_pred eeHHHHHHHHHcCCCcceeEEEecCCCCC-CceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCC
Q 044926 460 LSSVEVESVLYSNPAVNEAAVVARPDEFW-GETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538 (569)
Q Consensus 460 v~~~~iE~~l~~~~~i~~~~v~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~ 538 (569)
|+|.+||+.|.++|+|.+|+|++.+.+.. +...+++++..++.. .+.++++++++++|+.|++|..++++++||+|.
T Consensus 472 i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 549 (600)
T PRK08279 472 VATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAE--FDLAALAAHLYERLPAYAVPLFVRLVPELETTG 549 (600)
T ss_pred cCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCcc--CCHHHHHHHHHhhCccccCCeEEEeecCCCCCc
Confidence 99999999999999999999999876543 344556666554433 678999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHhcCCC
Q 044926 539 TGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 539 ~GKi~r~~l~~~~~~~~~~ 557 (569)
+||++|++|++++.+....
T Consensus 550 ~GKi~r~~L~~~~~~~~~~ 568 (600)
T PRK08279 550 TFKYRKVDLRKEGFDPSKV 568 (600)
T ss_pred chhhhHHHHhhcCCCcccc
Confidence 9999999999988887433
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=554.81 Aligned_cols=499 Identities=20% Similarity=0.294 Sum_probs=395.5
Q ss_pred CCCchHHHHHHHHHHcCC-CCeEEeCC-eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 12 TPLTPLVFLERAATVYGD-SPSIIYNN-ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~-~~al~~~~-~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
+..|+.++|.++++++|+ ++|+.+.+ +.+||+||.++++++|.+|.+. +++||+|+++++|++++++++|||+++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 567899999999999998 57877633 7899999999999999999987 59999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|+++.++.+++.+++++++++++|++.+..+... . ............+.+.+... . ... ......
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~-~-------~~~--~~~~~~ 348 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGK-L-WHLPEQLTQVRWVYLEDLKD-D-------VTT--ADKLWI 348 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhcc-C-CChhhhhccccEEEhhhhhh-h-------cch--hHHHHH
Confidence 9999999999999999999999999999876543210 0 00000000012222221100 0 000 000000
Q ss_pred hhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-
Q 044926 170 YESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF- 248 (569)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~- 248 (569)
..+.... . .......++|+++++|||||||.||||.++|+++..........++++.+|++++.+|++|.+++..
T Consensus 349 ~~~~~~~---~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~ 424 (718)
T PRK08043 349 FAHLLMP---R-LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVG 424 (718)
T ss_pred HHHHhCC---c-cccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHH
Confidence 0000000 0 0011245689999999999999999999999999988887777788999999999999999999865
Q ss_pred HHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH
Q 044926 249 PWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE 327 (569)
Q Consensus 249 ~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~ 327 (569)
.+.++..|+++++.+. +++..+++.+.++++|++.++|+++..+.+.. ...+++ ++|.+++||+++++++.+.++
T Consensus 425 ~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~--~lr~i~~gg~~l~~~~~~~~~ 500 (718)
T PRK08043 425 LFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFA--RLRYVVAGAEKLQESTKQLWQ 500 (718)
T ss_pred HHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Cccccc--ceEEEEEeCccCCHHHHHHHH
Confidence 5677888999888764 57788899999999999999999998887642 222334 899999999999999999888
Q ss_pred -hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 328 -SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 328 -~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
.+++++++.||+||+++.+...... .....++|.|.++. +++|+|.+ +. + +.|||+++|+
T Consensus 501 ~~~g~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~~~i~d~~-~~----~--~~Gel~v~g~ 561 (718)
T PRK08043 501 DKFGLRILEGYGVTECAPVVSINVPM-----------AAKPGTVGRILPGM-DARLLSVP-GI----E--QGGRLQLKGP 561 (718)
T ss_pred HHcCCCeecccCcccccceEEecCCc-----------ccCCCCCCCcCCCC-eeEEecCC-CC----C--CceEEEEecC
Confidence 5799999999999997665432110 11346899999998 99999863 31 2 5699999999
Q ss_pred cccccccCC--ccc-------cccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcce
Q 044926 407 CIMLGYLKD--PIG-------TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477 (569)
Q Consensus 407 ~~~~gy~~~--~~~-------~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~ 477 (569)
+++.||+++ ++. +...+..+|||+|||+|++++||++++.||.+|+|+++|++|+|.+||+++.+++.+.+
T Consensus 562 ~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~ 641 (718)
T PRK08043 562 NIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQ 641 (718)
T ss_pred CccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccce
Confidence 999999984 332 11122347899999999999999999999999999999999999999999999998999
Q ss_pred eEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 478 AAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 478 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
++|++.+++.+|+.+++++. +.. .+.++++++++++ ++.|++|..++++++||+|++||++|++|++++.+.+
T Consensus 642 ~avv~~~~~~~ge~~v~~~~---~~~--~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 715 (718)
T PRK08043 642 HATAIKSDASKGEALVLFTT---DSE--LTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDEPE 715 (718)
T ss_pred EEEEEccCCCCCceEEEEEc---Ccc--cCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhccc
Confidence 99999988888887777653 222 5678899999987 9999999999999999999999999999999887643
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=550.70 Aligned_cols=520 Identities=23% Similarity=0.267 Sum_probs=397.9
Q ss_pred CchHHHHHHHHHHcCCCCeEEeC------------C-----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 044926 14 LTPLVFLERAATVYGDSPSIIYN------------N-----------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVV 70 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~------------~-----------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~ 70 (569)
.|+.++|+++++.+||++|+.+. + +.+||+||.++++++|.+|.+.|+++||+|+|+
T Consensus 58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~ 137 (696)
T PLN02387 58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF 137 (696)
T ss_pred CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 58999999999999999999431 1 248999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcc
Q 044926 71 SPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDA 150 (569)
Q Consensus 71 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (569)
++|+++|+++++||+++|+++||+++.++.+++.++|++++++++|++.+....+......... ++.++.+++....
T Consensus 138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~---l~~ii~~~~~~~~ 214 (696)
T PLN02387 138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLET---VKRVIYMDDEGVD 214 (696)
T ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCC---ceEEEEECCCCch
Confidence 9999999999999999999999999999999999999999999999998776666555443322 4666766543211
Q ss_pred cccccCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccC-CCC
Q 044926 151 AVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW-SVP 229 (569)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~-~~~ 229 (569)
..... ..........++++.+.+...........++|+++|+|||||||.||||.+||+++...+......+ ++.
T Consensus 215 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~ 290 (696)
T PLN02387 215 SDSSL----SGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLG 290 (696)
T ss_pred hhhhh----hccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCC
Confidence 00000 0001112345666655443222222234678999999999999999999999999988877665543 578
Q ss_pred CCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccC------C--HHHHHHHHHHhCcceeechhHHHHHHHcCCCCC--
Q 044926 230 TQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKF------D--ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD-- 299 (569)
Q Consensus 230 ~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~------~--~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~-- 299 (569)
.+|++++.+|++|.+++...+.++..|+++...... + +..++..+++++||++.++|.++..+.+.....
T Consensus 291 ~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~ 370 (696)
T PLN02387 291 KNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVD 370 (696)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHh
Confidence 899999999999999998766667777776554321 1 234567899999999999999999886532100
Q ss_pred -----------------------------CCC--------------CCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeee
Q 044926 300 -----------------------------KKP--------------LKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSH 335 (569)
Q Consensus 300 -----------------------------~~~--------------~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~ 335 (569)
... ...+++|.+++||+++++++.+.++ .+|+++++
T Consensus 371 ~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~ 450 (696)
T PLN02387 371 AKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQ 450 (696)
T ss_pred cccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeE
Confidence 000 0014899999999999999988877 47999999
Q ss_pred cccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCC-cccCCCCCceeEEEEecCcccccccC
Q 044926 336 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSG-VSAKRDGSTLGEIVLRGGCIMLGYLK 414 (569)
Q Consensus 336 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~-~~~~~~~~~~Gel~v~~~~~~~gy~~ 414 (569)
+||+||+++.++.+... .....++|.|.+++ +++|+|.+++ ..........|||+|+||+++.|||+
T Consensus 451 ~YG~TEt~~~~~~~~~~-----------~~~~gsvG~p~p~~-evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~ 518 (696)
T PLN02387 451 GYGLTETCAGATFSEWD-----------DTSVGRVGPPLPCC-YVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFK 518 (696)
T ss_pred eechhhcccceeecCcc-----------cCCCCccCCCCCce-EEEEeeccccCcccCCCCCCCceEEeccCcccchhcC
Confidence 99999998666543211 11235799999999 9999994343 32211112469999999999999999
Q ss_pred CccccccccC--CCC--eeeecceEEEecCCcEEEeccCCCeEEe-CceeeeHHHHHHHHHcCCCcceeEEEecCCCCCC
Q 044926 415 DPIGTRKCMT--DDG--WFYTGDVGVMHSDGYLEIKDRSKDVIIS-GGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489 (569)
Q Consensus 415 ~~~~~~~~~~--~~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~ 489 (569)
+|+.+...|. ++| ||+|||+|++++||++++.||.+|+||. +|++|+|.+||++|.++|.|.+++|++.+..
T Consensus 519 ~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~--- 595 (696)
T PLN02387 519 NQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH--- 595 (696)
T ss_pred CHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---
Confidence 9999998883 345 9999999999999999999999999996 7999999999999999999999999987642
Q ss_pred ceeEEEEEecCCCC-----------C--------CCCHHHHHHHH-----hccCCCCccccEEEEecccC------CCCC
Q 044926 490 ETPCAFVSLKEGSK-----------S--------KPTEKEMIEYC-----RGRLPHYMVPKTVVFMDELP------KTST 539 (569)
Q Consensus 490 ~~~~~~v~~~~~~~-----------~--------~~~~~~l~~~l-----~~~l~~~~~p~~~~~~~~iP------~t~~ 539 (569)
..++++|++.+..- . ....+++.+.+ +++|..+.+|+.|.++.+-. +|++
T Consensus 596 ~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t 675 (696)
T PLN02387 596 SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAA 675 (696)
T ss_pred ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChh
Confidence 44677777654210 0 00112222223 34699999999998886532 7788
Q ss_pred CcccHHHHHHHHHhcC
Q 044926 540 GKIQKFVLREIAENMG 555 (569)
Q Consensus 540 GKi~r~~l~~~~~~~~ 555 (569)
.|+.|+.+++.|++.-
T Consensus 676 ~K~~R~~i~~~y~~~i 691 (696)
T PLN02387 676 LKLKREQIRKKFKDDL 691 (696)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 8999999999998753
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-65 Score=532.48 Aligned_cols=480 Identities=25% Similarity=0.320 Sum_probs=401.8
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
.+.++.+.|.+++..+|+++|+++.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 57889999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|+++.++.+++.++++.++++.+|+++...+.+.... ..++.+..... ...
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---------~~~~~~~~~~~-------------------~~~ 164 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD---------DAVAVIDPATA-------------------GAE 164 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh---------cceEEeccchh-------------------hhh
Confidence 99999999999999999999999999887655433211 12222221100 000
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHH--HHHhhhhccCCCCCCCEEEEecCchhhhhhhHH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP 249 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~--~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~ 249 (569)
... ..+...++.++++|||||||.||+|.++|.... .........+++..+|+++...|++|.+++...
T Consensus 165 ---~~~------~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~ 235 (516)
T PRK13383 165 ---ESG------GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGML 235 (516)
T ss_pred ---cCC------CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHH
Confidence 000 011223467899999999999999999997432 111222344678889999999999999999888
Q ss_pred HHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
+.++..|++++....+++..+++.++++++|.+.++|.++..+.+..........+.++|.+++||+++++.+++++. .
T Consensus 236 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 315 (516)
T PRK13383 236 MLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDT 315 (516)
T ss_pred HHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 888889999988888999999999999999999999999999987654322222234899999999999999999988 5
Q ss_pred cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcc
Q 044926 329 LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCI 408 (569)
Q Consensus 329 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 408 (569)
++..+++.||+||++..+..+.. .......++|.|.++. .++|+|+ ++.+++.+ +.|||+++|+++
T Consensus 316 ~g~~v~~~YG~tE~~~~~~~~~~----------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~ 381 (516)
T PRK13383 316 YGDILYNGYGSTEVGIGALATPA----------DLRDAPETVGKPVAGC-PVRILDR-NNRPVGPR--VTGRIFVGGELA 381 (516)
T ss_pred cCchhhhcccccccccceecccc----------ccccCCCcccCCCCCc-EEEEECC-CCCCCCCC--CceEEEEecCcc
Confidence 79999999999999865543321 1112345789999998 9999996 67777777 899999999999
Q ss_pred cccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCC
Q 044926 409 MLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFW 488 (569)
Q Consensus 409 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~ 488 (569)
+.||++.+.. .+. +|||+|||+|+++++|++++.||.+|+|+++|.+|++.+||+.|.++|+|.++++++.++...
T Consensus 382 ~~~Y~~~~~~---~~~-~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~ 457 (516)
T PRK13383 382 GTRYTDGGGK---AVV-DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERF 457 (516)
T ss_pred cccccCCchh---hee-cCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEecccccc
Confidence 9999987542 233 799999999999999999999999999999999999999999999999999999999998888
Q ss_pred CceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 489 GETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
|+.+.++|+..++.. ...++++++++++++.+++|..++++++||+|.+||++|++|+
T Consensus 458 g~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 458 GHRLAAFVVLHPGSG--VDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred CceEEEEEEECCCCC--CCHHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 889999999876654 5778999999999999999999999999999999999999874
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-65 Score=532.96 Aligned_cols=488 Identities=25% Similarity=0.346 Sum_probs=394.9
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGI-SRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
.|+.++|.+++ .|+++|+++.+..+||.||.++++++|..|.+.|+ .+||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v 80 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLV 80 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEE
Confidence 47888888765 79999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|++|.++.+++.+++++++++++|++++....+.+.. .. ...++.+... .+.+
T Consensus 81 ~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~----~~~~i~~~~~---------------------~~~~ 133 (540)
T PRK13388 81 GLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LP----GVRVLDVDTP---------------------AYAE 133 (540)
T ss_pred EecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--cc----CceEEEccch---------------------hhhh
Confidence 9999999999999999999999999877655443321 00 1122222211 1222
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHH-H
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW-A 251 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~-~ 251 (569)
++..... ..+.....++++++++|||||||.||+|.++|+++..........+++..+|+++...|++|.+++...+ .
T Consensus 134 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 212 (540)
T PRK13388 134 LVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAP 212 (540)
T ss_pred hhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHH
Confidence 2211111 1111224568999999999999999999999999988888778888999999999999999999887654 4
Q ss_pred HHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcC
Q 044926 252 MAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLG 330 (569)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~ 330 (569)
++..|+++++.+.+++..+++.++++++|++..+|..+..++........... +++ +.+ |+.+.+.....+. .++
T Consensus 213 ~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~--~l~-~~~-G~~~~~~~~~~~~~~~~ 288 (540)
T PRK13388 213 AVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADN--PLR-VAF-GNEASPRDIAEFSRRFG 288 (540)
T ss_pred HHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCcccccc--ceE-EEE-CCCCCHHHHHHHHHHhC
Confidence 57788888877778999999999999999999999999998876543221112 445 333 5566777777766 679
Q ss_pred CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeE-----------EeCCCCCcccCCCCCcee
Q 044926 331 FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVD-----------VLDPKSGVSAKRDGSTLG 399 (569)
Q Consensus 331 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------i~d~~~~~~~~~~~~~~G 399 (569)
+++++.||+||++.++.... . ....++|.|.+++ .+. ++|. +|..+..+ ++.|
T Consensus 289 ~~l~~~YG~tE~~~~~~~~~---~----------~~~~~vG~p~~g~-~i~~~~~~~~~~~~~~d~-~g~~~~~~-~~~G 352 (540)
T PRK13388 289 CQVEDGYGSSEGAVIVVREP---G----------TPPGSIGRGAPGV-AIYNPETLTECAVARFDA-HGALLNAD-EAIG 352 (540)
T ss_pred CceecccccccccceeecCC---C----------CCCCCCCCCCCCc-EEEcCCCCccccceeccC-ccccccCC-Ccce
Confidence 99999999999986654321 0 1134678888765 331 2332 33333221 2689
Q ss_pred EEEEe-cCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCccee
Q 044926 400 EIVLR-GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478 (569)
Q Consensus 400 el~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~ 478 (569)
||+++ |+.++.||+++++.+...|. +|||+|||+|++++||++++.||.+|+|+.+|++|+|.+||.+|.++|+|.+|
T Consensus 353 El~v~~g~~~~~gY~~~~~~t~~~~~-~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~ 431 (540)
T PRK13388 353 ELVNTAGAGFFEGYYNNPEATAERMR-HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRV 431 (540)
T ss_pred EEEEecCCcccccccCChHHHHHHhh-cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEE
Confidence 99998 99999999999999888886 79999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc--cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG--RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 479 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~--~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+|++.+++..|+.+++++++.++.. .+.++++++++. .|+.+++|..++++++||+|++||++|++|+++..+.
T Consensus 432 ~v~g~~~~~~g~~~~~~v~~~~~~~--~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 432 AVYAVPDERVGDQVMAALVLRDGAT--FDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred EEEEccCCCCCceeEEEEEECCCCc--CCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence 9999999888888888888876655 677889999976 4999999999999999999999999999999976544
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=532.26 Aligned_cols=527 Identities=24% Similarity=0.285 Sum_probs=420.4
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.+..++.++|+++++.+|+++|+.+.++.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus 30 ~~~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 109 (567)
T PRK06178 30 HGERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAV 109 (567)
T ss_pred cCcccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc--ccc
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ--FFS 168 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 168 (569)
++|++|..+..++.++++.++++++++++...+.+.+...... ...+++....+..........+...... ...
T Consensus 110 ~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (567)
T PRK06178 110 HVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETS----LRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAA 185 (567)
T ss_pred EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCC----cceEEEecccccccccccccccccccccccccc
Confidence 9999999999999999999999999999887776665543321 2344433321110000000000000000 000
Q ss_pred hhhHhhhcCC--CCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc-cCCCCCCCEEEEecCchhhhh
Q 044926 169 TYESLVAKGD--PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS-DWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 169 ~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~-~~~~~~~d~~~~~~pl~~~~g 245 (569)
.+.++++... ...........+++++++|||||||.||+|.+||.+++........ ...+..+|++++.+|++|..|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 265 (567)
T PRK06178 186 GAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAG 265 (567)
T ss_pred ccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHH
Confidence 1111111111 1111112345789999999999999999999999998876544433 356788999999999999999
Q ss_pred hhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE--eCCCCcHHH
Q 044926 246 WCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT--AGAPPPAAV 322 (569)
Q Consensus 246 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~--~g~~l~~~~ 322 (569)
+.. .+.++..|+++++.+++++..++..++++++|.+.++|..+..+++........+. +++.+.. .++.+++..
T Consensus 266 ~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~--~l~~~~~~~~~~~~~~~~ 343 (567)
T PRK06178 266 ENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLS--SLRQVRVVSFVKKLNPDY 343 (567)
T ss_pred HHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcc--hheeeeeccccccCCHHH
Confidence 854 66778899999999889999999999999999999999999998876543333443 6777544 458999999
Q ss_pred HHHHH-hcCCeeee-cccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeE
Q 044926 323 LLRTE-SLGFKVSH-GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400 (569)
Q Consensus 323 ~~~~~-~~~~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 400 (569)
.+.++ .++..++. .||+||+++.+......... ..........+|.|.+++ +++|+|++++..++.| +.||
T Consensus 344 ~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~----~~~~~~~~~~vG~p~~g~-~v~v~d~~~~~~~~~g--~~Ge 416 (567)
T PRK06178 344 RQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDD----DFDLLSQPVFVGLPVPGT-EFKICDFETGELLPLG--AEGE 416 (567)
T ss_pred HHHHHHHhCCcccccccccccccccceeccccccC----ccccccCCcccccccCCc-EEEEEcCCCCCcCCCC--CceE
Confidence 99988 45776665 79999987654432211000 000112335689999998 9999998789988887 8999
Q ss_pred EEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEE
Q 044926 401 IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480 (569)
Q Consensus 401 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 480 (569)
|+++|++++.||+++++.+...+. +|||+|||+|++++||++++.||.+|+|+.+|+++++.+||+++.++++|.++++
T Consensus 417 l~v~g~~v~~gY~~~~~~~~~~~~-dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v 495 (567)
T PRK06178 417 IVVRTPSLLKGYWNKPEATAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAV 495 (567)
T ss_pred EEEECCcccccccCChhhhhhccc-CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence 999999999999999998888887 7899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 481 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
++.+++..|+.++++|+..++.. .+.++++++++++++.+++|. ++++++||+|++||++|++|++++++.
T Consensus 496 ~~~~~~~~g~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 496 VGRPDPDKGQVPVAFVQLKPGAD--LTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL 566 (567)
T ss_pred EcCcCcccCcceEEEEEeCCCCc--CCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence 99988877888999998876654 678899999999999999996 888999999999999999999999775
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=533.52 Aligned_cols=516 Identities=29% Similarity=0.352 Sum_probs=413.9
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
..+.++.++|.++++.+|+++|+++.++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 20 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 99 (557)
T PRK07059 20 SQYPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYV 99 (557)
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccc----------cCCCCC
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSS----------QSHHPN 160 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 160 (569)
++|++|..+.+++.++++.++++++|+++.....+........ ...+++........... ......
T Consensus 100 ~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (557)
T PRK07059 100 VVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTA----VKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPA 175 (557)
T ss_pred EeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccC----CceeEEecccccccccccccccccccccccccc
Confidence 9999999999999999999999999998876655544433211 23333322111000000 000000
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccC----CC---CCCCE
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW----SV---PTQPV 233 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~----~~---~~~d~ 233 (569)
. .......+.+.+..............++++++++|||||||.||+|.++|.+++.++......+ .. .....
T Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (557)
T PRK07059 176 W-SLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN 254 (557)
T ss_pred c-CCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence 0 0000123444443332222222335678999999999999999999999999876654332211 11 12456
Q ss_pred EEEecCchhhhhhhH-HHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceE
Q 044926 234 YLWTLPMFHSNGWCF-PWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311 (569)
Q Consensus 234 ~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~ 311 (569)
+++.+|++|.+++.. .+..+..|++.++.+. .++..+++.++++++|.+.++|.++..+.+........++ +++.+
T Consensus 255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~--~l~~~ 332 (557)
T PRK07059 255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFS--KLIVA 332 (557)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCch--hheEE
Confidence 788899999988754 4566777887776653 6889999999999999999999999999887654444444 89999
Q ss_pred EEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcc
Q 044926 312 VTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVS 390 (569)
Q Consensus 312 ~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~ 390 (569)
+.||+.+++.+.+++. .+++++++.||+||++.++..+... ......++|.|.++. .++|+|+ ++..
T Consensus 333 ~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~vG~p~~g~-~v~i~d~-~~~~ 400 (557)
T PRK07059 333 NGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVD----------ATEFSGTIGLPLPST-EVSIRDD-DGND 400 (557)
T ss_pred EeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCC----------CCCcCCcccCccCCc-EEEEECC-CCCC
Confidence 9999999999998887 5799999999999998766543211 112235789999998 9999997 6777
Q ss_pred cCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHH
Q 044926 391 AKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470 (569)
Q Consensus 391 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~ 470 (569)
++.| +.|||+++|+.++.||+++++.+...+..+|||+|||+|++++||.+++.||.+|+++++|++|+|.+||++|.
T Consensus 401 ~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~ 478 (557)
T PRK07059 401 LPLG--EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVA 478 (557)
T ss_pred CCCC--CceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHH
Confidence 8877 88999999999999999999998888877899999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 471 ~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
++++|.+++|++.++...|+.++++++..+.. .+.++++++++++++.+++|..++++++||+|++||++|+.|+++
T Consensus 479 ~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~---~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 479 SHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA---LTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG 555 (557)
T ss_pred hCCceeEEEEEecccCCCCeeEEEEEEeCCCC---CCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence 99999999999998888788888888865432 567899999999999999999999999999999999999999864
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=535.31 Aligned_cols=521 Identities=29% Similarity=0.412 Sum_probs=416.0
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
.++.++|.+.+..+|+++|+++.++.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 103 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQ 103 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCccccccc-------CCCCC----CC
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQ-------SHHPN----IS 162 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~ 162 (569)
++|..+.+++.++++.++++++++++.....+........ ...++............. ....+ ..
T Consensus 104 i~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
T PRK06710 104 TNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATK----IEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179 (563)
T ss_pred cCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhc----cceeEEeccccccccccccccchhhccccccccccc
Confidence 9999999999999999999999998865544332221111 122222111100000000 00000 00
Q ss_pred CCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc-cCCCC-CCCEEEEecCc
Q 044926 163 DDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS-DWSVP-TQPVYLWTLPM 240 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~-~~~~~-~~d~~~~~~pl 240 (569)
.......++.+....... ........+++++++|||||||.||+|.++|+++..++..... .++.. ..+++++..|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~ 258 (563)
T PRK06710 180 ESETIHLWNSVEKEVNTG-VEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPF 258 (563)
T ss_pred ccchhhhhhhhhhccccc-cccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCch
Confidence 000000112211111110 0011123578999999999999999999999998755433322 23333 34678999999
Q ss_pred hhhhhhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCc
Q 044926 241 FHSNGWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPP 319 (569)
Q Consensus 241 ~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~ 319 (569)
+|.+++.. .+.+++.|+++++.+++++..+++.|+++++|++.++|+++..+.+........++ ++|.+++||++++
T Consensus 259 ~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~v~~gg~~~~ 336 (563)
T PRK06710 259 FHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDIS--SIRACISGSAPLP 336 (563)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChh--hhhheeeCCCcCC
Confidence 99998865 44567789998888889999999999999999999999999999886544444444 8999999999999
Q ss_pred HHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCce
Q 044926 320 AAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL 398 (569)
Q Consensus 320 ~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~ 398 (569)
+++.++++ .+++++++.||+||++..+...... .......+|.+.++. .++++|++++..++.| +.
T Consensus 337 ~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~~~~~~~~~~~g--~~ 403 (563)
T PRK06710 337 VEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLW----------EKRVPGSIGVPWPDT-EAMIMSLETGEALPPG--EI 403 (563)
T ss_pred HHHHHHHHHhhCCCEecccccccCccccccCccc----------ccccCCccCCCCCCC-eEEEEECCCCccCCCC--Cc
Confidence 99999988 4689999999999998755432110 011234678898887 8999998888888887 88
Q ss_pred eEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCccee
Q 044926 399 GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478 (569)
Q Consensus 399 Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~ 478 (569)
|||+++|+.++.||+++++.+...+. ++||+|||+++++++|.+++.||.+|+|+.+|.+|+|.+||++|.++++|.++
T Consensus 404 Gel~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~ 482 (563)
T PRK06710 404 GEIVVKGPQIMKGYWNKPEETAAVLQ-DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEV 482 (563)
T ss_pred eEEEEecCccchhhhCChHHHhhhcc-cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeE
Confidence 99999999999999999998888776 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 479 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
+|++.+++..|+.++++++..++.. .+.++++++++++++.+++|..++++++||+|++||++|++|++++.....+
T Consensus 483 ~v~~~~~~~~g~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~~ 559 (563)
T PRK06710 483 VTIGVPDPYRGETVKAFVVLKEGTE--CSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNED 559 (563)
T ss_pred EEEccccCCcCceeEEEEEECCCCC--CCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCcc
Confidence 9999999888888899998887654 6788999999999999999999999999999999999999999988776543
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-65 Score=590.89 Aligned_cols=517 Identities=20% Similarity=0.212 Sum_probs=405.9
Q ss_pred CCchHHHHHHHHHHcCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Q 044926 13 PLTPLVFLERAATVYGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
..++.++|+++++.+|+++|+++ .++.+||+||.++++++|.+|.+.|+++|++|+|+++|+++++++++|
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA 314 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMG 314 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHH
Confidence 35799999999999999999985 347899999999999999999999999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccH---HHHHHHHhc-CCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR---ALVREAVSL-FPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
|+++|++++|++|.++.+++.++++.++++++|++.... ..+...... .......+.+. +........ .. .
T Consensus 315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~--~ 389 (1389)
T TIGR03443 315 VLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSLVG--GS--L 389 (1389)
T ss_pred HHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-ecccccccc--cc--c
Confidence 999999999999999999999999999999999976421 111111110 00000011111 111100000 00 0
Q ss_pred CCCCCcccchhhHhhhcCC--CCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEe
Q 044926 160 NISDDQFFSTYESLVAKGD--PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWT 237 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~ 237 (569)
. ....+.+.... ..........++++++|+|||||||.||||.++|+++...+.+....+++..+|+++..
T Consensus 390 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~ 462 (1389)
T TIGR03443 390 E-------GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTML 462 (1389)
T ss_pred c-------cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 0 00000000000 00001112456899999999999999999999999999988888888999999999999
Q ss_pred cCchhhhhhhHHHHHHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEe
Q 044926 238 LPMFHSNGWCFPWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTA 314 (569)
Q Consensus 238 ~pl~~~~g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 314 (569)
.|++|..++...+.+++.|+++++.+. .++..+++.|+++++|++.++|+++..|.... ...++ ++|.+++|
T Consensus 463 ~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~--~lr~~~~g 537 (1389)
T TIGR03443 463 SGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIP--SLHHAFFV 537 (1389)
T ss_pred cCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCC--CccEEEEe
Confidence 999999988888999999999988764 36889999999999999999999999987543 22344 89999999
Q ss_pred CCCCcHHHHHHHHhc--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCC-Cccc
Q 044926 315 GAPPPAAVLLRTESL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKS-GVSA 391 (569)
Q Consensus 315 g~~l~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~-~~~~ 391 (569)
|+.+++...+++.+. ++++++.||+||++..+.......................+|.|.+++ ++.|+|++. +.++
T Consensus 538 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~ 616 (1389)
T TIGR03443 538 GDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNV-QLLVVNRNDRTQTC 616 (1389)
T ss_pred cccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCC-EEEEECCccCCCcC
Confidence 999999999888753 789999999999976665432211100000000011235689999998 999999743 4667
Q ss_pred CCCCCceeEEEEecCcccccccCCccccccccC----------------------------CCCeeeecceEEEecCCcE
Q 044926 392 KRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT----------------------------DDGWFYTGDVGVMHSDGYL 443 (569)
Q Consensus 392 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------------------~~~~~~TGD~~~~~~dg~l 443 (569)
+.| +.|||+|+|+.+++||+++|+.+...|. .++||+|||+|++++||.+
T Consensus 617 ~~G--~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l 694 (1389)
T TIGR03443 617 GVG--EVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNV 694 (1389)
T ss_pred CCC--CceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCE
Confidence 777 8999999999999999999999988773 2579999999999999999
Q ss_pred EEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC-------------------
Q 044926 444 EIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS------------------- 504 (569)
Q Consensus 444 ~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~------------------- 504 (569)
++.||.||+||++|++|+|.+||.+|.++|.|.+++|++.+++..+..++++++...+...
T Consensus 695 ~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1389)
T TIGR03443 695 ECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVK 774 (1389)
T ss_pred EEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchh
Confidence 9999999999999999999999999999999999999988887767788999887622110
Q ss_pred -----CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 505 -----KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 505 -----~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
....++++++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 775 ~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 775 GLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred hhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 012468999999999999999999999999999999999999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=533.05 Aligned_cols=514 Identities=24% Similarity=0.300 Sum_probs=412.1
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLL-SIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~-~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
..++.++|.+++..+|+++|+++.++.+||+||.+++.++|..|. +.|+++||+|+++++|+++++++++||+++|+++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 468999999999999999999999999999999999999999997 5799999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCccc--cc-------c--cCCCCC
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAA--VS-------S--QSHHPN 160 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~--~~~~~~ 160 (569)
+|++|.++.+++.++++.++++++|+++.....+........ ...++......... .. . ....+.
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP----VKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPE 179 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC----ccEEEEechhhhcccccchhhhhhhhhhhccccc
Confidence 999999999999999999999999999877665555443322 22333221100000 00 0 000000
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC----CCCC-CEEE
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS----VPTQ-PVYL 235 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~----~~~~-d~~~ 235 (569)
... .....+.+.+...............+++++++|||||||.||+|.++|.++..........+. +..+ ++++
T Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (560)
T PRK08751 180 YRI-NGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVI 258 (560)
T ss_pred cCC-CccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEE
Confidence 000 001223333332221111122345689999999999999999999999999877765544433 3333 5678
Q ss_pred EecCchhhhhhhH-HHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 236 WTLPMFHSNGWCF-PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 236 ~~~pl~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
+..|++|.+++.. .+..+..|++.++.. .+++..+++.++++++|++.++|.++..+.+.......+++ ++|.+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~--~lr~v~~ 336 (560)
T PRK08751 259 TALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFS--SLKMTLG 336 (560)
T ss_pred EecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchh--hheeeee
Confidence 8899999999865 455566777776654 57899999999999999999999999999987544444444 9999999
Q ss_pred eCCCCcHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccC
Q 044926 314 AGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAK 392 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~ 392 (569)
||+++++.+.+.++ .+++++++.||+||+++.+..+.... .....++|.+.++. .++++|+ ++..++
T Consensus 337 gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~vG~~~~~~-~v~i~d~-~~~~~~ 404 (560)
T PRK08751 337 GGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTL----------KEYNGSIGLPIPST-DACIKDD-AGTVLA 404 (560)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccc----------cccCCCcCccCCCc-eEEEECC-CCCCCC
Confidence 99999999999888 46899999999999987665433110 11234689999988 9999996 778887
Q ss_pred CCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 393 RDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 393 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
.+ +.|||+++|+.++.||+++++.+...+..+|||+|||+|+++++|++++.||.+|+|+.+|.+|+|.+||..|.++
T Consensus 405 ~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~ 482 (560)
T PRK08751 405 IG--EIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMM 482 (560)
T ss_pred CC--CceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhC
Confidence 77 8899999999999999999999988887789999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 473 ~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
++|.+++|++.++...|+.++++++... .. ...+++++.++++++.+++|..++++++||+|++||++|++|++.
T Consensus 483 ~~v~~~~v~~~~~~~~ge~~~~~v~~~~-~~--~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 483 PGVLEVAAVGVPDEKSGEIVKVVIVKKD-PA--LTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDA 557 (560)
T ss_pred cCeeeeEEEecCCCCCCceEEEEEEcCC-CC--CCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence 9999999999998877777777776543 22 577899999999999999999999999999999999999999876
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=579.33 Aligned_cols=518 Identities=21% Similarity=0.231 Sum_probs=421.1
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeC-CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYN-NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~-~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
....|+.++|.++++++|+++|+++. ++.+||+||.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|+
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 690 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGK 690 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence 34567999999999999999999874 5799999999999999999987 479999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|++|..+.+++.+++++++++.++++++..+.+......... .....++..++..... . ....
T Consensus 691 v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~---~~~~ 756 (1146)
T PRK08633 691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLEL-PENVKVIYLEDLKAKI----------S---KVDK 756 (1146)
T ss_pred EEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhc-ccCceEEEeehhcccc----------c---hhHH
Confidence 999999999999999999999999999987665544321000000 0023344333211000 0 0011
Q ss_pred hhHhhhcCC-CC----cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhh
Q 044926 170 YESLVAKGD-PE----FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 170 ~~~~~~~~~-~~----~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~ 244 (569)
+.+...... +. ........++|+++++|||||||.||+|.++|+++..........+++.++|++++.+|++|..
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 836 (1146)
T PRK08633 757 LTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSF 836 (1146)
T ss_pred HHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHH
Confidence 222211110 00 0001235678999999999999999999999999999888888888899999999999999999
Q ss_pred hhhH-HHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHH
Q 044926 245 GWCF-PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 245 g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
++.. .+.++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.......+++ ++|.+++||+++++++
T Consensus 837 g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gg~~~~~~~ 914 (1146)
T PRK08633 837 GLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFA--SLRLVVAGAEKLKPEV 914 (1146)
T ss_pred hHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCC--CeeeEEEcCCcCCHHH
Confidence 9876 677788898888776 47899999999999999999999999999886544444555 9999999999999999
Q ss_pred HHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 323 LLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 323 ~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
.++++ .+++++++.||+||+++.+..+.......... ........++|.|.+++ +++|+|++++++++.| +.|||
T Consensus 915 ~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~Gel 990 (1146)
T PRK08633 915 ADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK-RQTGSKEGSVGMPLPGV-AVRIVDPETFEELPPG--EDGLI 990 (1146)
T ss_pred HHHHHHHhCCCeecccccccCcceEEEecCcccccccc-cccCCCCCCccccCCCC-EEEEEcCCCCccCCCC--CceEE
Confidence 99988 57999999999999987665432211000000 01112346789999998 9999999889999887 89999
Q ss_pred EEecCcccccccCCccccccccCC---CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCC--Ccc
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTD---DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNP--AVN 476 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~---~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~--~i~ 476 (569)
+++|++++.||+++++.+...+.+ ++||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.++| .+.
T Consensus 991 ~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~ 1070 (1146)
T PRK08633 991 LIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEV 1070 (1146)
T ss_pred EEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCc
Confidence 999999999999999988877762 389999999999999999999999999999999999999999999998 466
Q ss_pred eeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 477 EAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 477 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+++|++.+++..|+.++++++.. . .+.+++++++++ +++.+++|..++++++||+|++||++|++|+++..++
T Consensus 1071 ~~~v~~~~~~~~g~~~~~~v~~~---~--~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1071 VFAVTAVPDEKKGEKLVVLHTCG---A--EDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred eEEEEeccCCCCCcEEEEEEecC---c--cCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 89999999998888888888762 1 466889998874 6999999999999999999999999999999987765
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=632.36 Aligned_cols=492 Identities=19% Similarity=0.235 Sum_probs=419.9
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
...|+.++|+++++++|+++|+++.++++||+||.++++++|..|.+.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 3093 ~~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~ 3172 (3956)
T PRK12467 3093 SERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAY 3172 (3956)
T ss_pred ccccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEe
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|++|.++.+++.+++++++++++|++....+.+... . ...++.++....
T Consensus 3173 vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~----~~~~~~~~~~~~---------------------- 3222 (3956)
T PRK12467 3173 VPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----A----GDTALTLDRLDL---------------------- 3222 (3956)
T ss_pred ecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----c----CCceeeecchhh----------------------
Confidence 9999999999999999999999999987654332110 0 112222221100
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWA 251 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~ 251 (569)
.......+.....++++++++|||||||.||||.++|+++...+.+....++++.+|+++...|++|..+....+.
T Consensus 3223 ----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 3298 (3956)
T PRK12467 3223 ----NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLW 3298 (3956)
T ss_pred ----cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHH
Confidence 0000111112356789999999999999999999999999999999989999999999999999999999888999
Q ss_pred HHHhCceEEEecc--CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh-
Q 044926 252 MAAVGGTNICIRK--FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES- 328 (569)
Q Consensus 252 ~~~~g~~~~~~~~--~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~- 328 (569)
+++.|+++++.+. +++..+++.|+++++|++.++|+++..+++... ...+. ++|.+++|||++++++.+++.+
T Consensus 3299 ~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~--~lr~~~~gGe~~~~~~~~~~~~~ 3374 (3956)
T PRK12467 3299 TLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GADCA--SLDIYVFGGEAVPPAAFEQVKRK 3374 (3956)
T ss_pred HHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--ccCCC--CceEEEEecCCCCHHHHHHHHHh
Confidence 9999999988875 789999999999999999999999999986532 23344 8999999999999999999874
Q ss_pred c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++.+++.||+||++..++......+ ........++|.|+++. +++|+|. .+.+++.| +.|||+|+|+.
T Consensus 3375 ~~~~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~v~d~-~~~~vp~G--~~GEL~i~G~~ 3444 (3956)
T PRK12467 3375 LKPRGLTNGYGPTEAVVTVTLWKCGGD------AVCEAPYAPIGRPVAGR-SIYVLDG-QLNPVPVG--VAGELYIGGVG 3444 (3956)
T ss_pred CCCCEEEeCcccchhEeeeEEEecccc------cccCCCCCCCccccCCC-EEEEECC-CCCCCCCC--CCceEEEcchh
Confidence 4 6889999999999876654432111 11112235789999999 9999996 68888888 89999999999
Q ss_pred ccccccCCccccccccCCCC-------eeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEE
Q 044926 408 IMLGYLKDPIGTRKCMTDDG-------WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~~~~-------~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 480 (569)
+++||+++++.+..+|..++ ||+|||+|++++||.+++.||.|++||++|.+|++.+||.+|.++|+|.+++|
T Consensus 3445 v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v 3524 (3956)
T PRK12467 3445 LARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVV 3524 (3956)
T ss_pred hhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEE
Confidence 99999999999999986543 69999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 481 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
++.+.. .++.++++|+...... ...++++++++++|+.|++|..++++++||+|++||++|++|++.....
T Consensus 3525 ~~~~~~-~~~~lva~v~~~~~~~--~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~~ 3595 (3956)
T PRK12467 3525 LARDGA-GGKQLVAYVVPADPQG--DWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAKG 3595 (3956)
T ss_pred EEecCC-CCcEEEEEEeCCCCCc--ccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCccc
Confidence 988543 4778999998876543 5778999999999999999999999999999999999999998765443
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-65 Score=541.22 Aligned_cols=508 Identities=21% Similarity=0.281 Sum_probs=396.6
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNN---------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~---------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 82 (569)
+.+|+.++++++++.+|+++|+++.+ +.+||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l 110 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF 110 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence 44799999999999999999998632 4899999999999999999986 8999999999999999999999
Q ss_pred HhhhccceEeec-cCCCC--HHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 83 AVPFAAAVLNTI-NTRLD--ARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 83 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
||+++|++++|+ ++.++ .+++.+++++++++++|++++..+.+.......... ....++.++....
T Consensus 111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~---------- 179 (612)
T PRK12476 111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRL-RRPRVIAIDAIPD---------- 179 (612)
T ss_pred HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccc-cCceEEEeccccc----------
Confidence 999999999999 57776 789999999999999999987766554443322110 0123333321100
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC-CCCCCEEEEec
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS-VPTQPVYLWTL 238 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~-~~~~d~~~~~~ 238 (569)
..... .......++++++|+|||||||.||||.++|+++..++......++ +.+++++++.+
T Consensus 180 ----------------~~~~~-~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~ 242 (612)
T PRK12476 180 ----------------SAGES-FVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWL 242 (612)
T ss_pred ----------------ccccc-ccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeC
Confidence 00000 0011235679999999999999999999999999877766666677 78889999999
Q ss_pred CchhhhhhhHHHHHHHhCceEEEecc--C--CHHHHHHHHH--HhCcceeechhHHHHHHHcCCCC--CCCCCCcCCCce
Q 044926 239 PMFHSNGWCFPWAMAAVGGTNICIRK--F--DASIIFDLIR--RHGVTHMCGAPVVLNMLSNYRDP--DKKPLKLAKPVH 310 (569)
Q Consensus 239 pl~~~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~l~--~~~~t~~~~~P~~l~~l~~~~~~--~~~~~~~~~l~~ 310 (569)
|++|..|+...+.+++.|++.+++.+ + ++..+++.++ +++++++.++|.++..+...... ......+.++|
T Consensus 243 Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr- 321 (612)
T PRK12476 243 PLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV- 321 (612)
T ss_pred CcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-
Confidence 99999999877777777887777653 3 8899999995 58999999999988877653211 11222344889
Q ss_pred EEEeCCCCcHHHHHHHHh-c---CC---eeeecccccccccceeeccccccc--ccCcHHH--------------Hhhhh
Q 044926 311 LVTAGAPPPAAVLLRTES-L---GF---KVSHGYGLTETGGIVVSCAWKRNW--NLLPAAE--------------KAKLK 367 (569)
Q Consensus 311 ~~~~g~~l~~~~~~~~~~-~---~~---~i~~~YG~tE~~~~~~~~~~~~~~--~~~~~~~--------------~~~~~ 367 (569)
+++||+++++.+.+++.+ + |+ .+++.||+||++..+......... ....... .....
T Consensus 322 ~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 401 (612)
T PRK12476 322 LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAH 401 (612)
T ss_pred EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCccee
Confidence 999999999999998874 3 43 489999999987554332111000 0000000 00012
Q ss_pred cccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccC------------------CCCee
Q 044926 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT------------------DDGWF 429 (569)
Q Consensus 368 ~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------~~~~~ 429 (569)
.++|.|.++. +++|+|++++.+++.| +.|||+++|++++.||+++++.+...|. .++||
T Consensus 402 ~~~G~~~~g~-~v~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~ 478 (612)
T PRK12476 402 VSCGQVARSQ-WAVIVDPDTGAELPDG--EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWL 478 (612)
T ss_pred EeCCCcCCCC-EEEEEeCCCCcCCCCC--CEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCee
Confidence 4789999998 9999998768888887 8999999999999999999998877773 13599
Q ss_pred eecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHc-CCCcce--eEEEecCCCCCCceeEEEEEecCCCCCCC
Q 044926 430 YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYS-NPAVNE--AAVVARPDEFWGETPCAFVSLKEGSKSKP 506 (569)
Q Consensus 430 ~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~-~~~i~~--~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 506 (569)
+|||+|+++ ||+++++||.+|+||++|++|+|.+||++|.+ ||.|.+ +++++.+++. ++.++++++..++.. ..
T Consensus 479 ~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~-~~ 555 (612)
T PRK12476 479 RTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTS-RA 555 (612)
T ss_pred eccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcc-cc
Confidence 999999985 99999999999999999999999999999985 899999 6777777776 788889888876532 14
Q ss_pred CHHHHHHHHhccCC-CCcc-ccEEEEec--ccCCCCCCcccHHHHHHHHHhcC
Q 044926 507 TEKEMIEYCRGRLP-HYMV-PKTVVFMD--ELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 507 ~~~~l~~~l~~~l~-~~~~-p~~~~~~~--~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+.++|.+++++++. .+++ |..+.+++ +||+|++||++|++|++++.+..
T Consensus 556 ~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~~ 608 (612)
T PRK12476 556 DPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGR 608 (612)
T ss_pred cHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcCC
Confidence 66788888888876 4777 67788886 69999999999999999987654
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-65 Score=532.61 Aligned_cols=486 Identities=22% Similarity=0.266 Sum_probs=378.3
Q ss_pred hHHHHHHHHHHcCCCCeEEeCC----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 16 PLVFLERAATVYGDSPSIIYNN----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 16 l~~~l~~~a~~~p~~~al~~~~----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
+.+.|+++++.+|+++|+++.+ +++||+||.++++++|.+|.+. ++||+|+|+++|++++++++|||+++|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~ 81 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV 81 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence 7889999999999999999876 7899999999999999999998 799999999999999999999999999986
Q ss_pred eeccCC--------CCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 92 NTINTR--------LDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 92 v~l~~~--------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
++ ++. ...+++.+++..++++++|++......+...... + .+.+..
T Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---------~-~~~~~~--------------- 135 (525)
T PRK05851 82 SI-LPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS---------V-TVHDLA--------------- 135 (525)
T ss_pred cC-CCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc---------c-cccccc---------------
Confidence 53 332 2234566778999999999987655443322110 0 000000
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCC-CCCEEEEecCchh
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVP-TQPVYLWTLPMFH 242 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~-~~d~~~~~~pl~~ 242 (569)
........ .......++++++|+|||||||.||||.++|+++...+......+++. .+|++++..|++|
T Consensus 136 --------~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 205 (525)
T PRK05851 136 --------TAAHTNRS--ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYH 205 (525)
T ss_pred --------cccccccc--ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCcc
Confidence 00000000 000123567999999999999999999999999999888888888888 8999999999999
Q ss_pred hhhhhHHHHHHHhCceEEEecc--C--CHHHHHHHHHHhCcceeechhHHHHHHHcCCCC-CCCCCCcCCCceEEEeCCC
Q 044926 243 SNGWCFPWAMAAVGGTNICIRK--F--DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP-DKKPLKLAKPVHLVTAGAP 317 (569)
Q Consensus 243 ~~g~~~~~~~~~~g~~~~~~~~--~--~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~-~~~~~~~~~l~~~~~~g~~ 317 (569)
.+++...+.+++.|+++++.+. + ++..+++.++++++|++...|.++..+.+.... ....+ .++|.+++||++
T Consensus 206 ~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l--~~lr~~~~gG~~ 283 (525)
T PRK05851 206 DMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDL--GALRVALNGGEP 283 (525)
T ss_pred CccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCH--HHhheeEecccc
Confidence 9999888888999999988763 3 678899999999999886655555555443221 12233 489999999999
Q ss_pred CcHHHHHHHHh----cCC---eeeecccccccccceeecccccccc--cCc--HHHHhhhhcccCcccccceeeEEeCCC
Q 044926 318 PPAAVLLRTES----LGF---KVSHGYGLTETGGIVVSCAWKRNWN--LLP--AAEKAKLKARQGVKTTALTEVDVLDPK 386 (569)
Q Consensus 318 l~~~~~~~~~~----~~~---~i~~~YG~tE~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~g~~~~~~~~~~i~d~~ 386 (569)
+++++.+++.+ +++ .+++.||+||++..+.......... ... .........++|.|.++. +++|+|++
T Consensus 284 l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~ 362 (525)
T PRK05851 284 VDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM-EVRISPGD 362 (525)
T ss_pred CCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCc-EEEEECCC
Confidence 99999888763 354 4999999999976554322110000 000 000112235789999998 99999986
Q ss_pred CCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHH
Q 044926 387 SGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVE 466 (569)
Q Consensus 387 ~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE 466 (569)
.+..++.| +.|||+++|++++.||+++++.+ .++||+|||+|+++ +|.++++||.+|+||++|++|+|.+||
T Consensus 363 ~~~~~~~g--~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE 434 (525)
T PRK05851 363 GAAGVAGR--EIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIE 434 (525)
T ss_pred CCccCCCC--CeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHH
Confidence 66667776 89999999999999999988643 37899999999997 899999999999999999999999999
Q ss_pred HHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCC--ccccEEEEec--ccCCCCCCcc
Q 044926 467 SVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHY--MVPKTVVFMD--ELPKTSTGKI 542 (569)
Q Consensus 467 ~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~~~~--~iP~t~~GKi 542 (569)
.+|.+||+|.+++|++.+++.+++.+.++|+.... . .+.+++.++++++++.+ ++|..+++++ +||+|++||+
T Consensus 435 ~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~-~--~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi 511 (525)
T PRK05851 435 RVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFR-G--PDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKL 511 (525)
T ss_pred HHHHhCCCcccceEEEEEecCCCCceeEEEEEEec-C--cchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHH
Confidence 99999999999999999888777776666654321 1 34456677777777666 8999999998 8999999999
Q ss_pred cHHHHHHHHHh
Q 044926 543 QKFVLREIAEN 553 (569)
Q Consensus 543 ~r~~l~~~~~~ 553 (569)
+|++|++.+++
T Consensus 512 ~r~~L~~~~~~ 522 (525)
T PRK05851 512 RRLAVKRSLEA 522 (525)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-64 Score=526.07 Aligned_cols=490 Identities=19% Similarity=0.252 Sum_probs=405.3
Q ss_pred chHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeec
Q 044926 15 TPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI 94 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (569)
++.+.|.+.+..+|+++|+.+.++.+||+||.+++.++|.+|.+.|+++|++|+++++|+.+++++++||+++|++++|+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhh
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
++.++.+++.++++..+++.++++.+...... ...++.+.. .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~~~~~~~~-----------------------~~~~~ 126 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAV-----------GTQIITLSA-----------------------LEQAE 126 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEEEeccccccccc-----------CCceEEchH-----------------------hhhhh
Confidence 99999999999999999999999876432210 011221111 01111
Q ss_pred hcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHH
Q 044926 175 AKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAA 254 (569)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~ 254 (569)
....+ ........+++.++++|||||||.||+|.++|+++.....+....+++..++++++..|++|..++...+.+++
T Consensus 127 ~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~ 205 (502)
T TIGR01734 127 TSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLA 205 (502)
T ss_pred hhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHH
Confidence 11110 11112245678999999999999999999999999988888888888999999999999999999988889999
Q ss_pred hCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hc-
Q 044926 255 VGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL- 329 (569)
Q Consensus 255 ~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~- 329 (569)
.|+++++.++ .++..+++.+++++++.+.++|.++..+..........++ +++.++++|++++..+.+++. ++
T Consensus 206 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~--~l~~~~~~G~~~~~~~~~~~~~~~~ 283 (502)
T TIGR01734 206 SGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYP--HLTHFLFCGEELPVKTAKALLERFP 283 (502)
T ss_pred CCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCC--cccEEEEcCCcCCHHHHHHHHHHCC
Confidence 9999988865 5889999999999999999999999887765433334444 899999999999999999987 44
Q ss_pred CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccc
Q 044926 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIM 409 (569)
Q Consensus 330 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 409 (569)
++.+++.||+||+++.+.......+ .........+|.+.+++ +++|+|+ ++..++.| +.|||+++|+.++
T Consensus 284 ~~~~~~~yG~tE~~~~~~~~~~~~~------~~~~~~~~~vg~~~~~~-~~~i~~~-~~~~~~~g--~~Gel~v~g~~~~ 353 (502)
T TIGR01734 284 KATIYNTYGPTEATVAVTSVKITQE------ILDQYPRLPIGFAKPDM-NLFIMDE-EGEPLPEG--EKGEIVIVGPSVS 353 (502)
T ss_pred CcEEEeCccCCcceEEEEEEEcccc------ccccCCccccccccCCC-EEEEECC-CCCCCCCC--CeeEEEEcccccc
Confidence 8899999999999765543321111 01112234689999998 9999998 57777777 8999999999999
Q ss_pred ccccCCccccccccC---CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecC-C
Q 044926 410 LGYLKDPIGTRKCMT---DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP-D 485 (569)
Q Consensus 410 ~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~-~ 485 (569)
.||+++++.+...|. ..+||+|||+|+++++ ++++.||.+|+|+.+|++|+|.+||+.+.++|+|.++++++.. .
T Consensus 354 ~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~ 432 (502)
T TIGR01734 354 KGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNK 432 (502)
T ss_pred ccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcC
Confidence 999999988877653 2359999999999966 9999999999999999999999999999999999999999865 3
Q ss_pred CCCCceeEEEEEecCCCCC--CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHH
Q 044926 486 EFWGETPCAFVSLKEGSKS--KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 486 ~~~~~~~~~~v~~~~~~~~--~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~ 552 (569)
...++.++++|+..+.... .....++++.++++++.+++|+.++++++||+|++||++|++|++++.
T Consensus 433 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 433 DHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred CCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 4446778888887654321 112377899999999999999999999999999999999999999864
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=523.68 Aligned_cols=513 Identities=26% Similarity=0.356 Sum_probs=408.1
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
++-|+.++|+++++.+|+++|+.+.++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 98 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV 98 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 36699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEcccc--HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHS--RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+|++|..+.+++.++++.++++++|+++.. .....+..... ....+++........ .... ............
T Consensus 99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~ 172 (541)
T TIGR03205 99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKG----LLDRLIVCEDDNWGK-VGTP-QAPIPADPRIVT 172 (541)
T ss_pred EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcc----cceEEEEeccccccc-cccc-ccccCCCccccc
Confidence 999999999999999999999999998632 11122211110 023333333221000 0000 000001111244
Q ss_pred hhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc-----cCCCCCCCEEEEecCchhhh
Q 044926 170 YESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS-----DWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~-----~~~~~~~d~~~~~~pl~~~~ 244 (569)
++++++....... .....++++++++|||||||.||+|.++|+++......... .......+++++..|++|.+
T Consensus 173 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 251 (541)
T TIGR03205 173 YADFVKGAAAPAE-WPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIY 251 (541)
T ss_pred HHHHHhcCCCCCC-CCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHH
Confidence 5555543222211 12245679999999999999999999999998754432111 11223457899999999998
Q ss_pred hhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 245 GWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 245 g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
++.. .+.++..|++++....+++..+++.|+++++|++.++|+++..+++........+. +++.++.||+++++.+.
T Consensus 252 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~l~~i~~gg~~~~~~~~ 329 (541)
T TIGR03205 252 ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLS--SLATIGSGGAPLPVEVA 329 (541)
T ss_pred HHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCcc--ccceEEEccccCCHHHH
Confidence 8766 55667788888777778999999999999999999999999999875433333444 89999999999999999
Q ss_pred HHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeC-CCCCcccCCCCCceeEE
Q 044926 324 LRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLD-PKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 324 ~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d-~~~~~~~~~~~~~~Gel 401 (569)
++++ .++.++++.||+||++..+..+.... .....++|.+.++. .++|.+ .+.+..++.+ +.|||
T Consensus 330 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~v~~~d~~~~~~~~g--~~Gel 396 (541)
T TIGR03205 330 NFFERKTGLKLKSGWGMTETCSPGTGHPPEG----------PDKPGSIGLMLPGI-ELDVVSLDDPTKVLPPG--EVGEL 396 (541)
T ss_pred HHHHHHhCCCeecccccccCCcccccCCCCC----------CCCCCCcceeccCc-eeEEEecCCCCccCCCC--CeeEE
Confidence 8887 46899999999999987665443111 11234688888887 877764 2466777766 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++|++++.||+++++.+...|. ++||+|||++++++||++++.||.+|+|+.+|+++++.+||.++.++++|.+++|+
T Consensus 397 ~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~ 475 (541)
T TIGR03205 397 RIRGPNVTRGYWNRPEESAEAFV-GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVI 475 (541)
T ss_pred EEecCCccccccCChhhhHhhhc-cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEE
Confidence 99999999999999998888887 78999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
+.+++..++.+++++++.++.. ..+.++++++++++|+.+++|..++++++||+|++||++|++|+
T Consensus 476 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 476 GIPDQYRGEAAKAFVKLRPGAK-PFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred ecCCcccCceEEEEEEECCCCC-cCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 9998877888889888876532 14678999999999999999999999999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=539.41 Aligned_cols=519 Identities=22% Similarity=0.255 Sum_probs=393.8
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeC----C-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYN----N-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 82 (569)
...|+.++|.+.++.+|+++|+.+. + +.+||+||.++++++|.+|.+.|+++||+|+|+++|+++|+++++
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4458999999999999999998642 1 357999999999999999999999999999999999999999999
Q ss_pred HhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHH-HHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCC
Q 044926 83 AVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA-LVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
||+++|+++||+++.++.+++.++++.++++++|++..... .+....... ..+..++.++........ ...
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~---~~l~~ii~~~~~~~~~~~-----~~~ 191 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSA---KRLKAIVSFTSVTEEESD-----KAS 191 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccC---CCceEEEEECCCChHHhh-----hhh
Confidence 99999999999999999999999999999999999865322 221111111 114455555432110000 000
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc-----CCCCCCCEEEE
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD-----WSVPTQPVYLW 236 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~-----~~~~~~d~~~~ 236 (569)
..+.....+++++..+........+..++|+++++|||||||.||||.+||+++...+...... .+++.+|++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls 271 (660)
T PLN02430 192 QIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLS 271 (660)
T ss_pred cCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEE
Confidence 0111134566666544322222223457899999999999999999999999998776654321 24678999999
Q ss_pred ecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCC-----C------------
Q 044926 237 TLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP-----D------------ 299 (569)
Q Consensus 237 ~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~-----~------------ 299 (569)
.+|++|.++....+.++..|+++.+... ++..+++.|.+++||++.++|.+++.+.+.... .
T Consensus 272 ~lPl~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 350 (660)
T PLN02430 272 FLPLAHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYK 350 (660)
T ss_pred eCcHHHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 9999999998876667788888777654 788999999999999999999999887642100 0
Q ss_pred ------------C--CCC------------CcCCCceEEEeCCCCcHHHHHHHHhcC-Ceeeecccccccccceeecccc
Q 044926 300 ------------K--KPL------------KLAKPVHLVTAGAPPPAAVLLRTESLG-FKVSHGYGLTETGGIVVSCAWK 352 (569)
Q Consensus 300 ------------~--~~~------------~~~~l~~~~~~g~~l~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~ 352 (569)
. ..+ ..+++|.+++||+++++++.+.++.++ +.++++||+||+++.++.....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 430 (660)
T PLN02430 351 YKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPD 430 (660)
T ss_pred HHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccc
Confidence 0 000 014899999999999999877777665 6899999999998766543211
Q ss_pred cccccCcHHHHhhhhcccCcccccceeeEEeCC-CCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeee
Q 044926 353 RNWNLLPAAEKAKLKARQGVKTTALTEVDVLDP-KSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYT 431 (569)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~-~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T 431 (569)
......++|.|.+++ ++++.|. +.+. .+.+.+..|||+|+||+++.||+++++.+...|. +|||+|
T Consensus 431 ----------~~~~~gsvG~p~~~~-evki~d~~~~g~-~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~-dGw~~T 497 (660)
T PLN02430 431 ----------EMCMLGTVGAPAVYN-ELRLEEVPEMGY-DPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMK-DGWFHT 497 (660)
T ss_pred ----------cCCCCCCccCCCCce-EEEEEEcCCcCc-ccCCCCCcceEEecCCCccccccCChHHhhhhhh-ccceec
Confidence 011246789999998 9999873 2332 2223235799999999999999999999998886 999999
Q ss_pred cceEEEecCCcEEEeccCCCeEE-eCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCC-------
Q 044926 432 GDVGVMHSDGYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK------- 503 (569)
Q Consensus 432 GD~~~~~~dg~l~~~GR~~~~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~------- 503 (569)
||+|++++||++++.||.+|+|| .+|++|+|.+||.++.++|.|.+++|++.. .+..++++|++.+..-
T Consensus 498 GDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~ 574 (660)
T PLN02430 498 GDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDN 574 (660)
T ss_pred cceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhC
Confidence 99999999999999999999999 579999999999999999999999999853 2467888888764210
Q ss_pred -CCCC----------HHHHHHHH-----hccCCCCccccEEEEecc-c-----CCCCCCcccHHHHHHHHHhcC
Q 044926 504 -SKPT----------EKEMIEYC-----RGRLPHYMVPKTVVFMDE-L-----PKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 504 -~~~~----------~~~l~~~l-----~~~l~~~~~p~~~~~~~~-i-----P~t~~GKi~r~~l~~~~~~~~ 555 (569)
.... .+.+.+.+ ++.|+.+..++.+.+.++ + .+|+++|+.|+.+.+.|++.-
T Consensus 575 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i 648 (660)
T PLN02430 575 GFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEI 648 (660)
T ss_pred CCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHH
Confidence 0000 11222222 245999999999988753 3 489999999999998887654
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=585.64 Aligned_cols=495 Identities=19% Similarity=0.203 Sum_probs=412.1
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
..+..|+.++|.++++.+|+++|+++.++.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 454 ~~~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~ 533 (1296)
T PRK10252 454 EIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGA 533 (1296)
T ss_pred CCCcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+++|++|+.+.+++.++++.++++++|++......+... . ...+.....
T Consensus 534 ~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~----~~~~~~~~~----------------------- 582 (1296)
T PRK10252 534 AWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----P----DLTSLCYNA----------------------- 582 (1296)
T ss_pred EEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----C----Cceeeeccc-----------------------
Confidence 999999999999999999999999999987654432110 0 000110000
Q ss_pred hhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHH
Q 044926 170 YESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFP 249 (569)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~ 249 (569)
...... ........++++++++|||||||.||||.++|+++.....+....++++.+|+++...|++|..++...
T Consensus 583 ---~~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 657 (1296)
T PRK10252 583 ---PLAPQG--AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEF 657 (1296)
T ss_pred ---cccccc--CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHH
Confidence 000000 001112356799999999999999999999999999999999889999999999999999999998888
Q ss_pred HHHHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHH
Q 044926 250 WAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT 326 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~ 326 (569)
+.+++.|+++++.++ .++..+++.++++++|++.++|+++..+++..........+.++|.+++||+.+++.+.+.+
T Consensus 658 ~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~ 737 (1296)
T PRK10252 658 FWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREW 737 (1296)
T ss_pred HHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHH
Confidence 999999999998763 68999999999999999999999999998764333221122389999999999999999998
Q ss_pred Hh-cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEec
Q 044926 327 ES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRG 405 (569)
Q Consensus 327 ~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 405 (569)
.+ +++++++.||+||++..++......... .........+|.|.++. .++|+|+ .+.+++.| +.|||+++|
T Consensus 738 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~----~~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~~~g--~~Gel~i~g 809 (1296)
T PRK10252 738 QQLTGAPLHNLYGPTEAAVDVSWYPAFGEEL----AAVRGSSVPIGYPVWNT-GLRILDA-RMRPVPPG--VAGDLYLTG 809 (1296)
T ss_pred HhcCCCEEEeCCCcchhhheeeeeecccccc----cccCCCCCCcccccCCC-EEEEECC-CCCCCCCC--CceEEEecc
Confidence 84 5899999999999986665443221100 00011235789999998 9999996 78888888 899999999
Q ss_pred CcccccccCCccccccccCC------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 406 GCIMLGYLKDPIGTRKCMTD------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 406 ~~~~~gy~~~~~~~~~~~~~------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
+.+++||+++++.+...|.. ++||+|||+|++++||.++++||.|++||++|++|++.+||.+|.++|+|.+++
T Consensus 810 ~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~ 889 (1296)
T PRK10252 810 IQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAV 889 (1296)
T ss_pred cccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceE
Confidence 99999999999999888853 349999999999999999999999999999999999999999999999999997
Q ss_pred EEecC----CCCCC--ceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 480 VVARP----DEFWG--ETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 480 v~~~~----~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
|+... +...| ..++++|+...+.. .+.++|+++++++|+.|++|..++.+++||+|++||++|++|++.
T Consensus 890 v~~~~~~~~~~~~~~~~~lva~v~~~~~~~--~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 890 THACVINQAAATGGDARQLVGYLVSQSGLP--LDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred EEEEeccccccCCCCccEEEEEEEcCCCCC--CCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence 76542 11112 36888888776543 678899999999999999999999999999999999999999753
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=521.97 Aligned_cols=486 Identities=26% Similarity=0.383 Sum_probs=389.7
Q ss_pred HHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCC
Q 044926 21 ERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98 (569)
Q Consensus 21 ~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 98 (569)
..+|..+|+++|+.+. ++.+||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|++++++++.+
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~ 83 (501)
T PRK13390 4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL 83 (501)
T ss_pred chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCC
Confidence 4577889999999874 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcCC
Q 044926 99 DARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGD 178 (569)
Q Consensus 99 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
+.+++.++++.+++++++++............. ....+.+..... . ...+++......
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~---------------~~~~~~~~~~~~ 141 (501)
T PRK13390 84 TAPEADYIVGDSGARVLVASAALDGLAAKVGAD------LPLRLSFGGEID-G---------------FGSFEAALAGAG 141 (501)
T ss_pred CHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc------cceEEEecCccc-c---------------cccHHHHhcccC
Confidence 999999999999999999987654332221111 111121111100 0 122332222111
Q ss_pred CCcccCCCCCCCCceEEEecCCCCCCCceEEE--chHHHHHHH----hhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 179 PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVH--CHRGIFIVA----VNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 179 ~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~--t~~~l~~~~----~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
+. .....++++++|||||||.||+|.+ +|.++.... ......+.+..+|+++...|++|..++...+..
T Consensus 142 ~~-----~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~ 216 (501)
T PRK13390 142 PR-----LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMV 216 (501)
T ss_pred CC-----CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHH
Confidence 10 0122357999999999999999996 455443321 112234677889999999999999988665566
Q ss_pred HHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCC
Q 044926 253 AAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGF 331 (569)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~ 331 (569)
+..|+++++.+.+++..+++.|+++++|++.++|+++..+.+..........+.++|.++.||++++..+.+.++ .++.
T Consensus 217 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~ 296 (501)
T PRK13390 217 HALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGP 296 (501)
T ss_pred HhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCC
Confidence 678999988888899999999999999999999999999887643322222234899999999999999999887 4688
Q ss_pred eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccccc
Q 044926 332 KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLG 411 (569)
Q Consensus 332 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 411 (569)
++++.||+||+++++.... .........+|.|.++ .++|+|+ ++.+++.| +.|||+++|++++.|
T Consensus 297 ~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~~~~g--~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~g 361 (501)
T PRK13390 297 IVYEYYSSTEAHGMTFIDS----------PDWLAHPGSVGRSVLG--DLHICDD-DGNELPAG--RIGTVYFERDRLPFR 361 (501)
T ss_pred ceeeeecccccCceEEecc----------hhhccCCCCcCCcccc--eEEEECC-CCCCCCCC--CceEEEEecCCcccc
Confidence 9999999999976543221 1111233578888887 5888986 77888877 899999999999999
Q ss_pred ccCCccccccccCC--CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCC
Q 044926 412 YLKDPIGTRKCMTD--DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489 (569)
Q Consensus 412 y~~~~~~~~~~~~~--~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~ 489 (569)
|+++++.+...+.. ++|++|||+|++++||.+++.||.+++|+.+|.+|+|.+||++|.++++|.+++|++.+++..+
T Consensus 362 y~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~ 441 (501)
T PRK13390 362 YLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMG 441 (501)
T ss_pred ccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccC
Confidence 99999988877643 5799999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceeEEEEEecCCCC-CCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 490 ETPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 490 ~~~~~~v~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
+.+++++++.++.. .+...++++++++++|+.+++|..++++++||+|++||++|++|+
T Consensus 442 e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 442 EQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred ceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 89999888776532 112356899999999999999999999999999999999999874
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=518.58 Aligned_cols=496 Identities=25% Similarity=0.339 Sum_probs=410.3
Q ss_pred hHHHHHHH-HHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeec
Q 044926 16 PLVFLERA-ATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI 94 (569)
Q Consensus 16 l~~~l~~~-a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (569)
-.++|.++ ++.+||++|+++.++.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|+
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred HHHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence 35666776 66799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhh
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
++..+.+++.++++.++++++|++.+..+.+.+....... ...++........ ...+.+..
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------------~~~~~~~~ 146 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPH---LEHRVVVGRPEAG----------------EVQLAELL 146 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCC---ccEEEEeCCCCcc----------------cccHHHHh
Confidence 9999999999999999999999998877666555433321 2334433321100 12333333
Q ss_pred hcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhh-hhccCCCCCCCEEEEecCchhhhhhhH-HHHH
Q 044926 175 AKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN-TLSDWSVPTQPVYLWTLPMFHSNGWCF-PWAM 252 (569)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~~ 252 (569)
........ .....++++++++|||||||.||+|.++|+++...+.. ....+++..+|+++...|++|.+++.. .+.+
T Consensus 147 ~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~ 225 (508)
T TIGR02262 147 ATESEQFK-PAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFP 225 (508)
T ss_pred hcCCCccC-CCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHH
Confidence 22221111 12244679999999999999999999999999876655 345568899999999999999998865 4456
Q ss_pred HHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcC
Q 044926 253 AAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLG 330 (569)
Q Consensus 253 ~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~ 330 (569)
+..|++.++.++ +++..+++.|+++++|++.++|.++..+.+......... .++|.++++|+.+++.+.+.+. .++
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~--~~l~~~~~~G~~l~~~~~~~~~~~~~ 303 (508)
T TIGR02262 226 MSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQ--VRLRLCTSAGEALPAEVGQRWQARFG 303 (508)
T ss_pred HHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccccccc--ccceeEEEcCCCCCHHHHHHHHHHhC
Confidence 778888877754 689999999999999999999999988876543322333 3899999999999999999888 579
Q ss_pred CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccc
Q 044926 331 FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIML 410 (569)
Q Consensus 331 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 410 (569)
+++++.||+||+++++..+... ......+|.|.++. .++|+| +++.+++.+ +.|||+++|+.++.
T Consensus 304 ~~v~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~v~i~d-~~~~~~~~g--~~Gel~i~~~~~~~ 368 (508)
T TIGR02262 304 VDIVDGIGSTEMLHIFLSNLPG-----------DVRYGTSGKPVPGY-RLRLVG-DGGQDVAAG--EPGELLISGPSSAT 368 (508)
T ss_pred CchhhCccccccCceeecCCcc-----------CCCCCCcCCCCCCc-EEEEEC-CCCCCCCCC--CeeEEEEecCcccc
Confidence 9999999999998765543211 01134678899987 999999 578888877 89999999999999
Q ss_pred cccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCc
Q 044926 411 GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGE 490 (569)
Q Consensus 411 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~ 490 (569)
||+++++.+...|. ++||+|||+++++++|.+++.||.+|+|+.+|.++++.+||+.|.++++|.++++++.++...++
T Consensus 369 gY~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~ 447 (508)
T TIGR02262 369 MYWNNRAKTRDTFQ-GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLI 447 (508)
T ss_pred ccCCCHHHhHhhhh-cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCc
Confidence 99999998888786 79999999999999999999999999999999999999999999999999999999988777777
Q ss_pred eeEEEEEecCCCC-CCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 491 TPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 491 ~~~~~v~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
.+.++++..++.. .+...+++++.++++++++++|..++++++||+|++||++|++|++
T Consensus 448 ~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 448 KPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred eeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence 8888888766542 1245788999999999999999999999999999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=509.39 Aligned_cols=506 Identities=26% Similarity=0.338 Sum_probs=384.7
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYN----NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFA 87 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~----~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 87 (569)
...++..++.++++.+|+.+++.+. .+.+||+|+.+++.++|.+|+..|+.+||+|+|++.|+++|+++.+||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~ 93 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILAL 93 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 4567899999999999998898853 378999999999999999999999977999999999999999999999999
Q ss_pred cceEeeccCCCCHHHHHHHHhhcCCeEEEEcccc-HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcc
Q 044926 88 AAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS-RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQF 166 (569)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (569)
|++.||+.++.+++++.++|++++++++|++... .+.........+. ........+....................
T Consensus 94 g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (613)
T COG1022 94 GAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPK---VVDLIVIIDLVREAVEAKALVLEVFPDEG 170 (613)
T ss_pred CCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccc---hhhhhhhhhhhhhccchhhcccccccccc
Confidence 9999999999999999999999999999999754 3333333332211 01111111100000000000000000000
Q ss_pred cchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC-CCCCCEEEEecCchhhhh
Q 044926 167 FSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS-VPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~-~~~~d~~~~~~pl~~~~g 245 (569)
...+ . ...........+..++|.|.|+|||||||.||||.+||+|+++++....+... ++++|+.++.+|+.|++.
T Consensus 171 ~~~~-~--~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~E 247 (613)
T COG1022 171 ISLF-L--IDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFE 247 (613)
T ss_pred chhh-h--hcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHH
Confidence 1111 0 11111112224577899999999999999999999999999999999999997 999999999999999999
Q ss_pred hhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCC----CC----------------------
Q 044926 246 WCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD----PD---------------------- 299 (569)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~----~~---------------------- 299 (569)
..+.....+. +........++..++..+..++||++.++|.+|+.+-+-.. ..
T Consensus 248 r~~~~~~~~~-~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~ 326 (613)
T COG1022 248 RAFEGGLALY-GGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRA 326 (613)
T ss_pred HHHHHHHHhh-cceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence 9875333333 33334445699999999999999999999999997654310 00
Q ss_pred ---------------------CCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCeeeecccccccccceeecccccccccC
Q 044926 300 ---------------------KKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLL 358 (569)
Q Consensus 300 ---------------------~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 358 (569)
+..+ ..++|.+++||+++++++...++..|+++.++||+||+.+.++.++..
T Consensus 327 ~~~~~~~~~~~~~d~LVf~Kir~~l-Ggri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~------ 399 (613)
T COG1022 327 LLGGGPLSWLLVADRLVFRKIRDAL-GGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPD------ 399 (613)
T ss_pred hcccCCcchhhhhhHHHHHHHHHHh-CCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEcccc------
Confidence 0011 258999999999999999999999999999999999998888775422
Q ss_pred cHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEe
Q 044926 359 PAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMH 438 (569)
Q Consensus 359 ~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 438 (569)
.....++|.|+|++ +++|.|. |||+|+||++|+|||++|+.|.+.|+.||||+|||+|.++
T Consensus 400 -----~~~~gtvG~p~p~~-evKI~d~-------------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d 460 (613)
T COG1022 400 -----RFVLGTVGKPLPGI-EVKIADD-------------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELD 460 (613)
T ss_pred -----CcccCCcCCcCCCc-eEEEccC-------------ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEc
Confidence 22456789999999 9999994 9999999999999999999999999999999999999999
Q ss_pred cCCcEEEeccCCCeEE-eCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC--------C--CC
Q 044926 439 SDGYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS--------K--PT 507 (569)
Q Consensus 439 ~dg~l~~~GR~~~~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--------~--~~ 507 (569)
++|+|.+.||.+|+|+ .+|+.|.|+.||..+.++|.|.+.+|++..+ ..+.++|++..+.-. . .+
T Consensus 461 ~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k----~~~~AlIvp~~~~l~~~a~~~~~~~~~~ 536 (613)
T COG1022 461 EDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDK----KFLVALIVPDFDALEKWAESLNKVISAS 536 (613)
T ss_pred CCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCC----cceEEEEeCCHHHHHHHHHhccccccCC
Confidence 9999999999999999 8999999999999999999999999999433 346677776653211 0 01
Q ss_pred H------HHHHHHH-------hccCCCCccccEEEEec-ccC-----CCCCCcccHHHHHHHHHhc
Q 044926 508 E------KEMIEYC-------RGRLPHYMVPKTVVFMD-ELP-----KTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 508 ~------~~l~~~l-------~~~l~~~~~p~~~~~~~-~iP-----~t~~GKi~r~~l~~~~~~~ 554 (569)
. .++++.+ ...+..+..+..+++.. ++. .|++=|+.|..+.+.+++.
T Consensus 537 ~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~ 602 (613)
T COG1022 537 REELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDE 602 (613)
T ss_pred HHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhH
Confidence 1 1122211 11234455666565542 333 6788999999988777654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=532.11 Aligned_cols=503 Identities=18% Similarity=0.163 Sum_probs=391.1
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~-----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
...+.|+.++|++++..+|+++|+++.+ +.+||+||.++++++|.+|.+.|+++||+|+++++|+++|++++|||
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 114 (614)
T PRK08180 35 GDYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAA 114 (614)
T ss_pred CCcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 3467899999999999999999998742 68999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCC-----HHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 85 PFAAAVLNTINTRLD-----ARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
+++|++++|++|.++ .+++.+++++++++++|++.... +.......... ...++.......
T Consensus 115 ~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~~--~~~~i~~~~~~~---------- 180 (614)
T PRK08180 115 MYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA--FARALAAVVPA--DVEVVAVRGAVP---------- 180 (614)
T ss_pred HHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH--HHHHHhhhccC--CceEEEecCCCC----------
Confidence 999999999999998 79999999999999999975421 11111111110 122232221100
Q ss_pred CCCCCcccchhhHhhhcCCCCc--ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCC--CCCEEE
Q 044926 160 NISDDQFFSTYESLVAKGDPEF--EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVP--TQPVYL 235 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~--~~d~~~ 235 (569)
......+.+++....... .......++|+++|+|||||||.||||.+||+++..........+++. ..++++
T Consensus 181 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l 256 (614)
T PRK08180 181 ----GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLV 256 (614)
T ss_pred ----CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEE
Confidence 000134555544322111 111124568999999999999999999999999988877776666653 568999
Q ss_pred EecCchhhhhhhH-HHHHHHhCceEEEecc-CCH---HHHHHHHHHhCcceeechhHHHHHHHcCCCCCC--CCCCcCCC
Q 044926 236 WTLPMFHSNGWCF-PWAMAAVGGTNICIRK-FDA---SIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK--KPLKLAKP 308 (569)
Q Consensus 236 ~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~-~~~---~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~--~~~~~~~l 308 (569)
+.+|++|.+++.. .+.++..|+++++.+. +++ ..+++.++++++|+++++|.++..|.+...... ....++++
T Consensus 257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l 336 (614)
T PRK08180 257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRL 336 (614)
T ss_pred EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccce
Confidence 9999999998755 5567788999888653 443 467889999999999999999999887532211 11123499
Q ss_pred ceEEEeCCCCcHHHHHHHHh-----c--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeE
Q 044926 309 VHLVTAGAPPPAAVLLRTES-----L--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVD 381 (569)
Q Consensus 309 ~~~~~~g~~l~~~~~~~~~~-----~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 381 (569)
|.+++||+++++++.+++.+ + ++++++.||+||+++++...... .....++|.|.+++ +++
T Consensus 337 r~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~ 404 (614)
T PRK08180 337 KLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP-----------LSRAGNIGLPAPGC-EVK 404 (614)
T ss_pred eEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc-----------cCCCCcccCccCCc-EEE
Confidence 99999999999999998874 2 37899999999998766543211 11345889999998 999
Q ss_pred EeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEE----ecCCcEEEeccCCCeEE-eC
Q 044926 382 VLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVM----HSDGYLEIKDRSKDVII-SG 456 (569)
Q Consensus 382 i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~----~~dg~l~~~GR~~~~i~-~~ 456 (569)
|+|+. ..|||+++|++++.||+++++.+...|..+|||+|||+|++ ++||++++.||.+|+|+ .+
T Consensus 405 i~d~~----------~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~ 474 (614)
T PRK08180 405 LVPVG----------GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSS 474 (614)
T ss_pred EecCC----------CCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCC
Confidence 99851 45999999999999999999999988877899999999999 46899999999999888 68
Q ss_pred ceeee--HHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCC-------------CCCCHHHHHHHHhccCCC
Q 044926 457 GENLS--SVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-------------SKPTEKEMIEYCRGRLPH 521 (569)
Q Consensus 457 G~~v~--~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~l~~~l~~~l~~ 521 (569)
|++++ +.++|.++.+||.|.+++|++.+++ .+.++|++.++.. ...+.++|+++++++|..
T Consensus 475 G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 550 (614)
T PRK08180 475 GTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLAR 550 (614)
T ss_pred CcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHH
Confidence 98777 7788899999999999999999875 3567777765410 012446788888777766
Q ss_pred Cc--------cccEEEEecccCCCC------CCcccHHHHHHHHHhcCC
Q 044926 522 YM--------VPKTVVFMDELPKTS------TGKIQKFVLREIAENMGS 556 (569)
Q Consensus 522 ~~--------~p~~~~~~~~iP~t~------~GKi~r~~l~~~~~~~~~ 556 (569)
++ +|..+++++++|+++ +||+.|+++.+.|++.-.
T Consensus 551 ~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~ 599 (614)
T PRK08180 551 LNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVE 599 (614)
T ss_pred HHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHH
Confidence 66 899999999999774 567899999888887653
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=512.73 Aligned_cols=458 Identities=25% Similarity=0.343 Sum_probs=387.5
Q ss_pred HHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHH
Q 044926 24 ATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTV 103 (569)
Q Consensus 24 a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 103 (569)
++..++++|+++.++.+||+||.++++++|..|. ++|+|+++++|+++++++++||+++|++++|+++..+.+++
T Consensus 10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l 84 (471)
T PRK07787 10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAER 84 (471)
T ss_pred hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHH
Confidence 4456889999999999999999999999999996 47999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcCCCCccc
Q 044926 104 SLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEW 183 (569)
Q Consensus 104 ~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (569)
.++++++++++++++.+... .. ...+...... ..+. .
T Consensus 85 ~~~l~~~~~~~il~~~~~~~------~~------~~~~~~~~~~--------------------~~~~-----------~ 121 (471)
T PRK07787 85 RHILADSGAQAWLGPAPDDP------AG------LPHVPVRLHA--------------------RSWH-----------R 121 (471)
T ss_pred HHHHHhcCCCEEEecCCccc------cc------ccceeeeccc--------------------cccc-----------c
Confidence 99999999999999863100 00 1111000000 0000 0
Q ss_pred CCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHHHHHhCceEEEe
Q 044926 184 IRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICI 262 (569)
Q Consensus 184 ~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~ 262 (569)
.....++++++++|||||||.||+|.++|+++...+......+++..+|++++.+|++|..|+.. .+.++..|++++..
T Consensus 122 ~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 201 (471)
T PRK07787 122 YPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHT 201 (471)
T ss_pred CCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEec
Confidence 01134679999999999999999999999999998888878888999999999999999999876 66778899999888
Q ss_pred ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccc
Q 044926 263 RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTE 341 (569)
Q Consensus 263 ~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE 341 (569)
+.+++..+++.++ +++|++.++|.++..+.+.... ...+. ++|.+++||+++++.+.+++. .++.++++.||+||
T Consensus 202 ~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~--~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 277 (471)
T PRK07787 202 GRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-ARALR--GARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTE 277 (471)
T ss_pred CCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-ccccc--ceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccc
Confidence 8899999999999 9999999999999999875322 22333 899999999999999999988 47899999999999
Q ss_pred cccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccc
Q 044926 342 TGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 421 (569)
++........ ......++|.|.++. .++|+|++ +.+++.+.++.|||+++|++++.||+++++.+..
T Consensus 278 ~~~~~~~~~~-----------~~~~~~~vG~~~~g~-~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~ 344 (471)
T PRK07787 278 TLITLSTRAD-----------GERRPGWVGLPLAGV-ETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAA 344 (471)
T ss_pred cCcceecCCC-----------CcccCCcccccCCCc-EEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchh
Confidence 9765433211 011235789999998 99999984 6666643225899999999999999999999998
Q ss_pred ccCCCCeeeecceEEEecCCcEEEeccC-CCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecC
Q 044926 422 CMTDDGWFYTGDVGVMHSDGYLEIKDRS-KDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKE 500 (569)
Q Consensus 422 ~~~~~~~~~TGD~~~~~~dg~l~~~GR~-~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~ 500 (569)
.|..++||+|||+|++++||++++.||. +++++.+|++|++.+||++|.+++.|.+++|++.+++..++.++++++..+
T Consensus 345 ~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~ 424 (471)
T PRK07787 345 AFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGAD 424 (471)
T ss_pred cccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCC
Confidence 8887899999999999999999999996 899999999999999999999999999999999998888888999888732
Q ss_pred CCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 501 GSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 501 ~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
. .+.+++.++++++++++++|..++++++||+|.+||++|++|+++
T Consensus 425 ~----~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~ 470 (471)
T PRK07787 425 D----VAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE 470 (471)
T ss_pred C----CCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence 2 577899999999999999999999999999999999999999763
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=515.94 Aligned_cols=505 Identities=26% Similarity=0.331 Sum_probs=407.0
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
.+|+.++|.++++++|+++|+.+.++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 2 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v 81 (533)
T PRK07798 2 AWNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPV 81 (533)
T ss_pred cccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
++++.++.+++.++++++++++++++.+....+.+....... ...++.++....... ......+++
T Consensus 82 ~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~ 147 (533)
T PRK07798 82 NVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPK---LRTLVVVEDGSGNDL-----------LPGAVDYED 147 (533)
T ss_pred ecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCC---ccEEEEecCCccccc-----------CCccccHHH
Confidence 999999999999999999999999998776666555332221 334555543321110 001245666
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---------CCC------CCCCEEEEe
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---------WSV------PTQPVYLWT 237 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---------~~~------~~~d~~~~~ 237 (569)
+++........ .....+.++++|||||||.||+|+++|+++.......... ..+ ..+++++..
T Consensus 148 ~~~~~~~~~~~--~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 148 ALAAGSPERDF--GERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHhccCCcCCC--CCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 65543322111 1223456799999999999999999999987654332211 111 567889999
Q ss_pred cCchhhhhhhHHHHHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHH-HHHcCCC-CCCCCCCcCCCceEEE
Q 044926 238 LPMFHSNGWCFPWAMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLN-MLSNYRD-PDKKPLKLAKPVHLVT 313 (569)
Q Consensus 238 ~pl~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~-~l~~~~~-~~~~~~~~~~l~~~~~ 313 (569)
.|++|..++...+.+++.|+++++.+ .+++..+++.++++++|.+.++|..+. .+.+... .....+ .++|.+++
T Consensus 226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~--~~l~~i~~ 303 (533)
T PRK07798 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDL--SSLFAIAS 303 (533)
T ss_pred cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCC--CceEEEEE
Confidence 99999999988889999999999998 789999999999999999999986543 3333322 222233 49999999
Q ss_pred eCCCCcHHHHHHHHh-c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccC--cccccceeeEEeCCCCCc
Q 044926 314 AGAPPPAAVLLRTES-L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQG--VKTTALTEVDVLDPKSGV 389 (569)
Q Consensus 314 ~g~~l~~~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~i~d~~~~~ 389 (569)
||+.+++.+.+++.+ + +..+++.||+||++.......... ....| .+.++. .++|+|+ ++.
T Consensus 304 gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-------------~~~~g~~~~~~~~-~~~i~~~-~~~ 368 (533)
T PRK07798 304 GGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG-------------AVHTGGPRFTIGP-RTVVLDE-DGN 368 (533)
T ss_pred CCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC-------------CccCCCCccCCCc-eEEEECC-CCC
Confidence 999999999999884 5 789999999999965544321110 11222 455665 8999997 566
Q ss_pred ccCCCCCceeEEEEecCcccccccCCccccccccCC---CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHH
Q 044926 390 SAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD---DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVE 466 (569)
Q Consensus 390 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~---~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE 466 (569)
+++.|....|+++ .++.++.||++++..+...|.. ++||+|||++++++||++++.||.+++++.+|++|++.+||
T Consensus 369 ~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE 447 (533)
T PRK07798 369 PVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVE 447 (533)
T ss_pred CCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHH
Confidence 7777632237666 4568999999999988877742 35999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHH
Q 044926 467 SVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFV 546 (569)
Q Consensus 467 ~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~ 546 (569)
++|.++++|.+++|++.+++..++.+.+++++.++.. .+.++++++++++++.+++|..++++++||+|.+||++|+.
T Consensus 448 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~ 525 (533)
T PRK07798 448 EALKAHPDVADALVVGVPDERWGQEVVAVVQLREGAR--PDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRW 525 (533)
T ss_pred HHHHhCccceeEEEEeccCcccCceEEEEEEECCCCC--CCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHH
Confidence 9999999999999999988877888888888876654 68899999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 044926 547 LREIAEN 553 (569)
Q Consensus 547 l~~~~~~ 553 (569)
|+++.++
T Consensus 526 ~~~~~~~ 532 (533)
T PRK07798 526 AKEQAAE 532 (533)
T ss_pred Hhhhhcc
Confidence 9998764
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=515.22 Aligned_cols=492 Identities=21% Similarity=0.264 Sum_probs=408.1
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
|++.++|++++..+|+++++...++.+||+||.++++++|.+|.+.|+.+|++|+++++|+.+++++++||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++.++.+++.++++..+++++|++.+... ... ....+... .+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~-----------------------~~~~~ 127 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLIIATEELPL--------EIL---GIPVITLD-----------------------ELKDI 127 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEEEecccccc--------ccc---CCcEEehH-----------------------Hhhhh
Confidence 999999999999999999999999875410 000 01111110 01111
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~ 253 (569)
..... .........++++++++|||||||.||+|.++|+++.....+....+++..+++++...|++|..++...+.++
T Consensus 128 ~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l 206 (503)
T PRK04813 128 FATGN-PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTL 206 (503)
T ss_pred hhccc-cccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHH
Confidence 10000 01111224567899999999999999999999999998888888888899999999999999999988888889
Q ss_pred HhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hc
Q 044926 254 AVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL 329 (569)
Q Consensus 254 ~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~ 329 (569)
..|+++++.+. .++..+++.+++++++++..+|+++..+..........+. ++|.++++|+++++.+.+++. .+
T Consensus 207 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~--~l~~i~~~G~~l~~~~~~~~~~~~ 284 (503)
T PRK04813 207 ASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLP--NLTHFLFCGEELPHKTAKKLLERF 284 (503)
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCC--CceEEEEecCcCCHHHHHHHHHHC
Confidence 99999988865 5889999999999999999999999887655433344444 899999999999999999987 45
Q ss_pred -CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcc
Q 044926 330 -GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCI 408 (569)
Q Consensus 330 -~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 408 (569)
++.+++.||+||++..+.......+ ........++|.+.++. +++|+|. ++..++.+ +.|||+++|+++
T Consensus 285 ~~~~~~~~yG~tE~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~ 354 (503)
T PRK04813 285 PSATIYNTYGPTEATVAVTSIEITDE------MLDQYKRLPIGYAKPDS-PLLIIDE-EGTKLPDG--EQGEIVISGPSV 354 (503)
T ss_pred CCceEEeCcccchheeEEEEEEeccc------ccccCCCCcccccCCCC-EEEEECC-CCCCCCCC--CceEEEEecccc
Confidence 7899999999999765544322211 01112234688899998 9999996 77777777 889999999999
Q ss_pred cccccCCccccccccC---CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCC
Q 044926 409 MLGYLKDPIGTRKCMT---DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485 (569)
Q Consensus 409 ~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 485 (569)
+.||+++++.+...|. +.+||+|||+|++ ++|++++.||.+|+|+.+|+++++.+||+.+.++|+|.+++|++.++
T Consensus 355 ~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 433 (503)
T PRK04813 355 SKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNK 433 (503)
T ss_pred ccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeC
Confidence 9999999988887763 2359999999999 89999999999999999999999999999999999999999999877
Q ss_pred CCCCceeEEEEEecCCCCC--CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 486 EFWGETPCAFVSLKEGSKS--KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 486 ~~~~~~~~~~v~~~~~~~~--~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
...++.++++++..++... ....++++++++++++.+++|..++++++||+|++||++|++|++++++
T Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 503 (503)
T PRK04813 434 DHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK 503 (503)
T ss_pred CCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence 7667788888887654211 1233679999999999999999999999999999999999999998753
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=514.70 Aligned_cols=517 Identities=27% Similarity=0.376 Sum_probs=411.3
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
..++.++|+++++.+|+++|+++.++.+||.||.++++++|..|.+ .|+++|++|+++++|+++++++++||+++|+++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 101 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIV 101 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 3579999999999999999999999999999999999999999985 799999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccc-----------cCCCCC
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSS-----------QSHHPN 160 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 160 (569)
+|++|..+.+++.++++.++++.++++.+..+.+.+...... ...++............ ....+.
T Consensus 102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (560)
T PRK08974 102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTP----VKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPK 177 (560)
T ss_pred eccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcC----cceEEEecccccccccccccccchhhhccccccc
Confidence 999999999999999999999999998776655554433221 12222211110000000 000000
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC---CCCCCEEEEe
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS---VPTQPVYLWT 237 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~---~~~~d~~~~~ 237 (569)
.. ......+.+....+............+++++++|||||||.||+|.++|.++..+.......+. ....+.++..
T Consensus 178 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08974 178 YH-LPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA 256 (560)
T ss_pred cc-CCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEe
Confidence 00 0001122222222211111112245789999999999999999999999999876654433332 3446678889
Q ss_pred cCchhhhhhhH-HHHHHHhCceEEEec-cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeC
Q 044926 238 LPMFHSNGWCF-PWAMAAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG 315 (569)
Q Consensus 238 ~pl~~~~g~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g 315 (569)
+|++|.+++.. .+..+..|++.++.. ..++..+++.++++++|.+.++|+++..+.+........++ ++|.+++||
T Consensus 257 ~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~--~lr~~~~gg 334 (560)
T PRK08974 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFS--SLKLSVGGG 334 (560)
T ss_pred CcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCcc--ceeEEEecC
Confidence 99999988755 455567788776654 46888999999999999999999999999887644444444 899999999
Q ss_pred CCCcHHHHHHHHh-cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCC
Q 044926 316 APPPAAVLLRTES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRD 394 (569)
Q Consensus 316 ~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~ 394 (569)
+++++.+.+++++ +++++++.||+||++..+..+.... .....++|.|.+++ .++|+|+ ++..++.|
T Consensus 335 ~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g 402 (560)
T PRK08974 335 MAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDL----------DYYSGSIGLPVPST-EIKLVDD-DGNEVPPG 402 (560)
T ss_pred ccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCC----------cccCCccccCcCCC-EEEEECC-CCCCCCCC
Confidence 9999999998884 6899999999999987766543211 11235789999998 9999997 67778777
Q ss_pred CCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCC
Q 044926 395 GSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPA 474 (569)
Q Consensus 395 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~ 474 (569)
+.|||+++|+.++.||+++++.+...|. ++||+|||+++++++|.+++.||.+|+|+++|.++++.+||++|.++++
T Consensus 403 --~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~ 479 (560)
T PRK08974 403 --EPGELWVKGPQVMLGYWQRPEATDEVIK-DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPK 479 (560)
T ss_pred --CceEEEEecCCcchhhcCChhhhhhhhh-cCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCC
Confidence 8999999999999999999988888785 8999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 475 VNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 475 i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
|.+++|++.+++..|+.++++++..+.. ...++++++++++++.+++|..+.++++||+|.+||++|++|+++..+.
T Consensus 480 v~~~~v~~~~~~~~g~~~~~~v~~~~~~---~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 556 (560)
T PRK08974 480 VLEVAAVGVPSEVSGEAVKIFVVKKDPS---LTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK 556 (560)
T ss_pred eeEEEEEeeecCCcceEEEEEEECCCCC---CCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence 9999999999888787777777654422 4678899999999999999999999999999999999999999877653
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=533.93 Aligned_cols=512 Identities=21% Similarity=0.253 Sum_probs=385.7
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeC---------------------------CeeeeHHHHHHHHHHHHHHHHHcCCCCC
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYN---------------------------NITYTWSDTHHRCLQLASSLLSIGISRG 64 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~---------------------------~~~~Ty~el~~~v~~~A~~L~~~g~~~g 64 (569)
...|+.++|.++++.+||++|+.+. .+.+||+||.++++++|.+|.+.|+++|
T Consensus 67 ~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~g 146 (700)
T PTZ00216 67 YGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKG 146 (700)
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3458999999999999999999873 4789999999999999999999999999
Q ss_pred CEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEE
Q 044926 65 HVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLI 144 (569)
Q Consensus 65 d~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (569)
|+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++......+.......... ...++.+
T Consensus 147 d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~--~~~ii~~ 224 (700)
T PTZ00216 147 SNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMP--NTTIIYL 224 (700)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCC--ceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999876555443333221110 1234444
Q ss_pred eCCCcccccccCCCCCCCCCcccchhhHhhhcCC---CCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhh
Q 044926 145 SDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGD---PEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN 221 (569)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~ 221 (569)
+...... .........++++++.+. .......+..++|+++++|||||||.||||.+||+++...+..
T Consensus 225 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~ 295 (700)
T PTZ00216 225 DSLPASV---------DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILA 295 (700)
T ss_pred CCCcccc---------ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHH
Confidence 3211100 001112356777665541 1111122346789999999999999999999999999887766
Q ss_pred hhccC----C-CCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHH-------HHHHhCcceeechhHHH
Q 044926 222 TLSDW----S-VPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFD-------LIRRHGVTHMCGAPVVL 289 (569)
Q Consensus 222 ~~~~~----~-~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~l~~~~~t~~~~~P~~l 289 (569)
....+ + +..+|++++.+|++|.+++......+..|+.+.+. ++..+++ .+++++||++.++|.++
T Consensus 296 ~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~ 372 (700)
T PTZ00216 296 LEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIF 372 (700)
T ss_pred HHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHH
Confidence 55433 2 46789999999999999987655555566655442 4555554 68899999999999999
Q ss_pred HHHHcCCCCC-------------------------CCCC--------------CcCCCceEEEeCCCCcHHHHHHHHh-c
Q 044926 290 NMLSNYRDPD-------------------------KKPL--------------KLAKPVHLVTAGAPPPAAVLLRTES-L 329 (569)
Q Consensus 290 ~~l~~~~~~~-------------------------~~~~--------------~~~~l~~~~~~g~~l~~~~~~~~~~-~ 329 (569)
+.+.+..... .... ..+++|.+++||+++++++.+.++. +
T Consensus 373 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~ 452 (700)
T PTZ00216 373 DTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF 452 (700)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 8876431100 0000 0147999999999999999987774 4
Q ss_pred CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCc-ccCCCCCceeEEEEecCcc
Q 044926 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGV-SAKRDGSTLGEIVLRGGCI 408 (569)
Q Consensus 330 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~-~~~~~~~~~Gel~v~~~~~ 408 (569)
+ +++++||+||+++.++..... .....++|.|.+++ +++|+|.++.. ...++ ..|||+|+|+++
T Consensus 453 ~-~l~~~YG~TEt~~~~~~~~~~-----------~~~~~svG~p~~g~-evkI~d~~~~~~~~~~~--~~GEL~vrG~~v 517 (700)
T PTZ00216 453 G-MVIQGWGLTETVCCGGIQRTG-----------DLEPNAVGQLLKGV-EMKLLDTEEYKHTDTPE--PRGEILLRGPFL 517 (700)
T ss_pred h-hHhhccCcccccccccccCCC-----------CCCCCCcCCcCCCe-EEEEeechhhccCCCCC--CCceEEEcCCcc
Confidence 6 999999999997655432110 11246899999999 99999975422 12223 579999999999
Q ss_pred cccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEE-eCceeeeHHHHHHHHHcCCCccee--EEEecCC
Q 044926 409 MLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEA--AVVARPD 485 (569)
Q Consensus 409 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~-~~G~~v~~~~iE~~l~~~~~i~~~--~v~~~~~ 485 (569)
+.||+++|+.+...|..+|||+|||+|++++||++++.||.+|+|| .+|++|+|.+||.++.++|.|.++ +|++.++
T Consensus 518 ~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~ 597 (700)
T PTZ00216 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA 597 (700)
T ss_pred cchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC
Confidence 9999999999999998899999999999999999999999999999 899999999999999999999973 4444432
Q ss_pred CCCCceeEEEEEecCCC--------CCCCC----------HHHHHHHH-----hccCCCCccccEEEEecc------cCC
Q 044926 486 EFWGETPCAFVSLKEGS--------KSKPT----------EKEMIEYC-----RGRLPHYMVPKTVVFMDE------LPK 536 (569)
Q Consensus 486 ~~~~~~~~~~v~~~~~~--------~~~~~----------~~~l~~~l-----~~~l~~~~~p~~~~~~~~------iP~ 536 (569)
...++++|++.... .-... .+.+.+.+ ++.+..+..++.|.++.+ =-+
T Consensus 598 ---~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~l 674 (700)
T PTZ00216 598 ---RSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVL 674 (700)
T ss_pred ---CceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCC
Confidence 24577887764310 00000 11222222 245778889998888742 237
Q ss_pred CCCCcccHHHHHHHHHhcC
Q 044926 537 TSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 537 t~~GKi~r~~l~~~~~~~~ 555 (569)
|+++|+.|+.+++.|++.-
T Consensus 675 T~t~K~~R~~i~~~y~~~i 693 (700)
T PTZ00216 675 TAAMKLKRRVIDERYADLI 693 (700)
T ss_pred ChhhccchHHHHHHHHHHH
Confidence 9999999999999998754
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-62 Score=509.31 Aligned_cols=497 Identities=26% Similarity=0.361 Sum_probs=404.1
Q ss_pred HHHHHHHcCCCCeEEe--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCC
Q 044926 20 LERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTR 97 (569)
Q Consensus 20 l~~~a~~~p~~~al~~--~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 97 (569)
...+++.+|+++|+++ .++.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.
T Consensus 3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 3577889999999987 46789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcC
Q 044926 98 LDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKG 177 (569)
Q Consensus 98 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
.+.+++.++++.++++.++++........+....... ....+.+....... ....+.+.....
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 145 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPG---VRHRLVLDGDGELE--------------GFVGYAEAVAGL 145 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCC---ceEEEEecCCCCCc--------------ccccHHHHhcCC
Confidence 9999999999999999999998776655544433221 12233332211000 012233322211
Q ss_pred CCCcccCCCCCCCCceEEEecCCCCCCCceEEEc--hHHHHH---HHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 178 DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHC--HRGIFI---VAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 178 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t--~~~l~~---~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
.. ......++.++++|||||||.||+|.++ |.++.. ........+++...+++++..|++|..++...+..
T Consensus 146 ~~----~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~ 221 (511)
T PRK13391 146 PA----TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLV 221 (511)
T ss_pred CC----CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHH
Confidence 11 0112344678999999999999999964 555432 22334455677889999999999999998888888
Q ss_pred HHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCC
Q 044926 253 AAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGF 331 (569)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~ 331 (569)
+..|+++++.+.+++..+++.++++++|++.++|+++..+.+..........+.+++.+++||+++++++.+++. .++.
T Consensus 222 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~ 301 (511)
T PRK13391 222 IRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGP 301 (511)
T ss_pred HHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCC
Confidence 899999999988999999999999999999999999998887643333232344999999999999999999988 4688
Q ss_pred eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccccc
Q 044926 332 KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLG 411 (569)
Q Consensus 332 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 411 (569)
.+++.||+||++++...... ........+|.+.++ .++|+|. ++..++.| +.|||+++|+ ++.|
T Consensus 302 ~v~~~YG~tE~~~~~~~~~~----------~~~~~~~~vG~~~~g--~~~i~d~-~~~~~~~g--~~Gel~~~g~-~~~g 365 (511)
T PRK13391 302 IIHEYYAATEGLGFTACDSE----------EWLAHPGTVGRAMFG--DLHILDD-DGAELPPG--EPGTIWFEGG-RPFE 365 (511)
T ss_pred ceeeeeccccccceEEecCc----------cccccCCCcCCcccc--eEEEECC-CCCCCCCC--CceEEEEecC-cceE
Confidence 99999999999876543211 011223577888887 5888996 67777776 8899999999 8999
Q ss_pred ccCCccccccccCCC-CeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCc
Q 044926 412 YLKDPIGTRKCMTDD-GWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGE 490 (569)
Q Consensus 412 y~~~~~~~~~~~~~~-~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~ 490 (569)
|+++++.+...+..+ +||+|||+|+++++|.+++.||.+|+++.+|.++++.+||++|.++|.|.+++|++.++...|+
T Consensus 366 y~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~ 445 (511)
T PRK13391 366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGE 445 (511)
T ss_pred EcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCc
Confidence 999998888777644 8999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eeEEEEEecCCCC-CCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 491 TPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 491 ~~~~~v~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
.++++++..++.. .+...++++++++++++.+++|..+.+++++|+|++||++|+.|++.+.+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 446 EVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred eeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 8888888765432 12345889999999999999999999999999999999999999998865
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=507.92 Aligned_cols=498 Identities=24% Similarity=0.350 Sum_probs=401.1
Q ss_pred CeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhc
Q 044926 31 PSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHC 110 (569)
Q Consensus 31 ~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 110 (569)
.|+...++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++++++|..+.+++.++++.+
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCC-CCCCcccchhhHhhhcCCCCcccCCCCCC
Q 044926 111 QSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN-ISDDQFFSTYESLVAKGDPEFEWIRPRTE 189 (569)
Q Consensus 111 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (569)
+++++|++......+.+.... ...++......... ......+. .........+++++..... ......
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 151 (509)
T PRK12406 83 GARVLIAHADLLHGLASALPA------GVTVLSVPTPPEIA-AAYRISPALLTPPAGAIDWEGWLAQQEP----YDGPPV 151 (509)
T ss_pred CCcEEEEccchhhhhhhhhhc------ccceeecccccccc-cccccccccccCCCCccCHHHHhcccCc----cCCCCC
Confidence 999999988766544332211 01111111110000 00000000 0001112345544432211 112356
Q ss_pred CCceEEEecCCCCCCCceEEEchHH---HHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCC
Q 044926 190 WDPIVLNYTSGTTMSPKGVVHCHRG---IFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFD 266 (569)
Q Consensus 190 ~~~a~i~~TSGtTG~pk~v~~t~~~---l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~ 266 (569)
+++++++|||||||.||+|.++|.. +..........+++..++++++..|++|..+....+.++..|+++++.+.++
T Consensus 152 ~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 231 (509)
T PRK12406 152 PQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFD 231 (509)
T ss_pred CCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCC
Confidence 7999999999999999999987654 3333444455678899999999999999988877777888899998888889
Q ss_pred HHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh-cCCeeeecccccccccc
Q 044926 267 ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES-LGFKVSHGYGLTETGGI 345 (569)
Q Consensus 267 ~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~ 345 (569)
+..+++.++++++|.+.++|.++..+++..........+.++|.+++||+++++++++++.+ +++.+++.||+||++.+
T Consensus 232 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 311 (509)
T PRK12406 232 PEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAV 311 (509)
T ss_pred HHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCce
Confidence 99999999999999999999999999876543222233349999999999999999999884 68999999999999876
Q ss_pred eeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccc-cccCCccccccccC
Q 044926 346 VVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIML-GYLKDPIGTRKCMT 424 (569)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~-gy~~~~~~~~~~~~ 424 (569)
+..+.. ........+|.+.++. .++++|+ ++..++.| +.|||+++|+.++. ||+++++.+...+.
T Consensus 312 ~~~~~~----------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~~~y~~~~~~~~~~~~ 377 (509)
T PRK12406 312 TFATSE----------DALSHPGTVGKAAPGA-ELRFVDE-DGRPLPQG--EIGEIYSRIAGNPDFTYHNKPEKRAEIDR 377 (509)
T ss_pred EecCcc----------cccccCCCcCccCCCc-EEEEECC-CCCCCCCC--CceEEEEECCccccccccCCchhcccccC
Confidence 553321 1111234689999988 9999997 67878777 89999999998875 99998887776665
Q ss_pred CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC
Q 044926 425 DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS 504 (569)
Q Consensus 425 ~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 504 (569)
++||+|||++++++||.+++.||.+|+||++|.+|++.+||+.|.++++|.++++++.++...++.+++++++.++..
T Consensus 378 -~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~- 455 (509)
T PRK12406 378 -GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGAT- 455 (509)
T ss_pred -CCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCC-
Confidence 899999999999999999999999999999999999999999999999999999999998877888888888876544
Q ss_pred CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 505 KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 505 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
...+++++.++++++++++|..++++++||+|.+||++|++|++.+.+...
T Consensus 456 -~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~~~ 506 (509)
T PRK12406 456 -LDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWANAG 506 (509)
T ss_pred -CCHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhhcc
Confidence 578999999999999999999999999999999999999999998887653
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=621.45 Aligned_cols=485 Identities=20% Similarity=0.222 Sum_probs=414.8
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
+.++.++|.++++.+|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|++++
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~v 589 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYV 589 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|++|.++.+++.+++++++++++|++......+. ... ...++.++....
T Consensus 590 pld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~-------~~~-~~~~~~~~~~~~----------------------- 638 (5163)
T PRK12316 590 PLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP-------LAA-GVQVLDLDRPAA----------------------- 638 (5163)
T ss_pred ccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC-------ccc-CceEEEecCcch-----------------------
Confidence 9999999999999999999999999876433211 000 122222221100
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
.+.... .........++++++|+|||||||.||||.++|+++...+.+....++++.+|+++...|++|..++...+.+
T Consensus 639 ~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~ 717 (5163)
T PRK12316 639 WLEGYS-EENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWP 717 (5163)
T ss_pred hhccCC-CCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHH
Confidence 000000 0111122457899999999999999999999999999999999899999999999999999999999889999
Q ss_pred HHhCceEEEec---cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 253 AAVGGTNICIR---KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 253 ~~~g~~~~~~~---~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
++.|+++++.+ .+++..+++.++++++|++.++|+++..|.+... ...+. ++|.+++||+++++++.+.+. .
T Consensus 718 L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~--~l~~~~~gGe~l~~~~~~~~~~~ 793 (5163)
T PRK12316 718 LMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCT--SLRRIVCSGEALPADAQEQVFAK 793 (5163)
T ss_pred HhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCC--CccEEEEeeccCCHHHHHHHHHh
Confidence 99999999985 3789999999999999999999999999987532 22344 899999999999999999886 3
Q ss_pred c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++++++.||+||++..++..... ........+|.|.+++ +++|+|+ ++.+++.| +.|||+|+|+.
T Consensus 794 ~~~~~l~n~YG~TE~~~~~~~~~~~---------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~ 860 (5163)
T PRK12316 794 LPQAGLYNLYGPTEAAIDVTHWTCV---------EEGGDSVPIGRPIANL-ACYILDA-NLEPVPVG--VLGELYLAGRG 860 (5163)
T ss_pred CCCCeEEeCcCcChheeeeeEEecc---------cccCCCCCCccccCCC-EEEEECC-CCCCCCCC--CceEEEecccc
Confidence 3 78999999999997554433211 0112235789999998 9999997 67888887 89999999999
Q ss_pred ccccccCCccccccccC------CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 408 IMLGYLKDPIGTRKCMT------DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++||+++++.+...|. +++||+|||+|++++||.+++.||.||+||++|++|+|.+||.+|.++|+|.+++|+
T Consensus 861 v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~ 940 (5163)
T PRK12316 861 LARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVL 940 (5163)
T ss_pred cChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEE
Confidence 99999999999988874 245999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHH
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~ 552 (569)
+.+ ++.++++|+..++.. ...++++++++++|+.|++|..++++++||+|++||++|++|.+...
T Consensus 941 ~~~----~~~lva~vv~~~~~~--~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 941 AVD----GKQLVGYVVLESEGG--DWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred EcC----CCeEEEEEEccCCCC--CCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCccc
Confidence 986 577999999876654 67889999999999999999999999999999999999999976543
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=505.51 Aligned_cols=453 Identities=25% Similarity=0.307 Sum_probs=385.4
Q ss_pred chHHHH-HHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 15 TPLVFL-ERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 15 tl~~~l-~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
++.+++ ..+++.+|+++|+++.++.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~ 82 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLP 82 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEee
Confidence 344444 5668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++..+.+++.++++++++++++++++.... .. ..... . . .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~----------~~~~~-~-----------------------~---~- 123 (458)
T PRK09029 83 LNPQLPQPLLEELLPSLTLDFALVLEGENTF-SA----------LTSLH-L-----------------------Q---L- 123 (458)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcCcccch-hh----------ccccc-c-----------------------c---c-
Confidence 9999999999999999999999998764321 00 00000 0 0 0
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~ 253 (569)
.. ........++++++++|||||||.||+|.++|++++..+......+++..+|+++...|++|.+++...+.++
T Consensus 124 --~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l 198 (458)
T PRK09029 124 --VE---GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWL 198 (458)
T ss_pred --cc---ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHH
Confidence 00 0000124567899999999999999999999999999988888888999999999999999999988777788
Q ss_pred HhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCee
Q 044926 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKV 333 (569)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i 333 (569)
+.|+++++.+. ..+++.+. ++|.+..+|+++..+...... .. ++|.+++||+.+++.+.+.+.++++++
T Consensus 199 ~~G~~v~~~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----~~--~l~~i~~gG~~~~~~~~~~~~~~g~~~ 267 (458)
T PRK09029 199 YAGATLVVRDK---QPLEQALA--GCTHASLVPTQLWRLLDNRSE----PL--SLKAVLLGGAAIPVELTEQAEQQGIRC 267 (458)
T ss_pred hCCceEEeCCh---HHHHHHHh--hceeeecChHHHHHHHhcccc----CC--cceEEEECCCCCCHHHHHHHHHcCCcE
Confidence 89998887654 55677774 789999999999998876432 22 789999999999999999988889999
Q ss_pred eecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccccccc
Q 044926 334 SHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413 (569)
Q Consensus 334 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~ 413 (569)
++.||+||++........ ....++|.|.+++ .++|.+ |||+++|+.++.||+
T Consensus 268 ~~~YG~tE~~~~~~~~~~-------------~~~~~~G~~~~~~-~~~i~~--------------gel~v~g~~~~~gY~ 319 (458)
T PRK09029 268 WCGYGLTEMASTVCAKRA-------------DGLAGVGSPLPGR-EVKLVD--------------GEIWLRGASLALGYW 319 (458)
T ss_pred eccccccccCcceeccCC-------------CCCCCCCCCCCCC-EEEEeC--------------CEEEEecCceeeeee
Confidence 999999999765432210 1124588999888 888765 899999999999999
Q ss_pred CCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeE
Q 044926 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPC 493 (569)
Q Consensus 414 ~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~ 493 (569)
++++.+.... .++||+|||+|+++ ||.+++.||.+|+|+++|.+|+|.+||+.|.++|+|.+++|++.+++.+|+.++
T Consensus 320 ~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 397 (458)
T PRK09029 320 RQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPV 397 (458)
T ss_pred cCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEE
Confidence 9887765443 37899999999999 999999999999999999999999999999999999999999999998889999
Q ss_pred EEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 494 AFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 494 ~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
++|+.... .+.++|+++++++++.|++|..+++++++|+|.+||++|+.|++++.+...
T Consensus 398 a~v~~~~~----~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~~ 456 (458)
T PRK09029 398 AVVESDSE----AAVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQLG 456 (458)
T ss_pred EEEEcCcc----cCHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhccC
Confidence 98887632 577899999999999999999999999999999999999999999987653
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-63 Score=504.79 Aligned_cols=429 Identities=19% Similarity=0.232 Sum_probs=358.0
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEE
Q 044926 39 TYTWSDTHHRCLQLASSLLSIGI-SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV 117 (569)
Q Consensus 39 ~~Ty~el~~~v~~~A~~L~~~g~-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 117 (569)
.+.|+||.++++++|.+|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 47899999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred ccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEe
Q 044926 118 DFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNY 197 (569)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 197 (569)
+.+..... . .. .. .. .....++++++++|
T Consensus 99 ~~~~~~~~------------------~--~~-------------------~~------~~------~~~~~~~~~~~i~~ 127 (452)
T PRK07445 99 LDQLKLSH------------------P--PP-------------------LP------SQ------GILPNLETGWIMIP 127 (452)
T ss_pred cCcccccc------------------C--CC-------------------CC------cc------ccCCCCCCcEEEEe
Confidence 76532100 0 00 00 00 00124578999999
Q ss_pred cCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHh
Q 044926 198 TSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRH 277 (569)
Q Consensus 198 TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 277 (569)
||||||.||+|.+||+++...+......+++.. ++.++.+|++|.+|+...+.+++.|+++++.+............++
T Consensus 128 TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~ 206 (452)
T PRK07445 128 TGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNP 206 (452)
T ss_pred CCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhc
Confidence 999999999999999999888777766666654 4678899999999998888889999999887643222223444578
Q ss_pred CcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCeeeecccccccccceeeccccccccc
Q 044926 278 GVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNL 357 (569)
Q Consensus 278 ~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~ 357 (569)
+++++.++|+++..+.+.. ...+. ++|.+++||+++++...+.+.++++++++.||+||++..+.....
T Consensus 207 ~~t~~~~vP~~l~~l~~~~---~~~l~--~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~------ 275 (452)
T PRK07445 207 SDFFLSLVPTQLQRLLQLR---PQWLA--QFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKP------ 275 (452)
T ss_pred CceEEEehHHHHHHHHhhC---hhhhh--cceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCc------
Confidence 8999999999999988631 22333 899999999999999999888779999999999998765443210
Q ss_pred CcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEE
Q 044926 358 LPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVM 437 (569)
Q Consensus 358 ~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~ 437 (569)
........++|.|.++. +++|+ .+ +.|||+++|+.++.||++++. ..++||+|||+|++
T Consensus 276 ---~~~~~~~~~~G~~~p~~-~v~i~---------~g--~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~ 334 (452)
T PRK07445 276 ---DDFLAGNNSSGQVLPHA-QITIP---------AN--QTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYL 334 (452)
T ss_pred ---hhhccCCCcCCccCCCC-eEEEc---------CC--CcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEE
Confidence 11111234689999988 88887 12 679999999999999997532 23789999999999
Q ss_pred ecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc
Q 044926 438 HSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG 517 (569)
Q Consensus 438 ~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~ 517 (569)
++||++++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|++.+++..|+.++++++..++. .+.+++++++++
T Consensus 335 d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~---~~~~~l~~~~~~ 411 (452)
T PRK07445 335 DAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPS---ISLEELKTAIKD 411 (452)
T ss_pred cCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCC---CCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999998876552 467899999999
Q ss_pred cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 518 RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 518 ~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+++.+++|..++++++||+|++||++|++|++++.+.
T Consensus 412 ~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 448 (452)
T PRK07445 412 QLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQR 448 (452)
T ss_pred hCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHh
Confidence 9999999999999999999999999999999988764
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=620.69 Aligned_cols=490 Identities=20% Similarity=0.228 Sum_probs=415.3
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
+.++.++|.++++.+|+++|+++.++.+||+||+++++++|..|.+.|+++|++|+|+++|+++++++++||+++|+++|
T Consensus 2002 ~~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~v 2081 (5163)
T PRK12316 2002 GPGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYV 2081 (5163)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|++|.++.+++.+++++++++++|++.+....+.. .. ....+.+.... .+.
T Consensus 2082 pld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-------~~-~~~~~~~~~~~--------------------~~~- 2132 (5163)
T PRK12316 2082 PLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL-------PA-GVARLPLDRDA--------------------EWA- 2132 (5163)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc-------cc-ccceEeccchh--------------------hhh-
Confidence 99999999999999999999999998765432210 00 01111111100 000
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
... ...+.....++++++|+|||||||.||||.++|+++...+......++++.+|+++...|++|..++...+.+
T Consensus 2133 --~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~ 2208 (5163)
T PRK12316 2133 --DYP--DTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHP 2208 (5163)
T ss_pred --ccC--ccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHH
Confidence 000 0011123567899999999999999999999999999999998889999999999999999999988888999
Q ss_pred HHhCceEEEecc--CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh-c
Q 044926 253 AAVGGTNICIRK--FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES-L 329 (569)
Q Consensus 253 ~~~g~~~~~~~~--~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~-~ 329 (569)
++.|+++++.+. +++..+++.++++++|++.++|+++..+.+....... .. ++|.+++|||+++++..+++.+ +
T Consensus 2209 L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-~~--~lr~~~~gGe~l~~~~~~~~~~~~ 2285 (5163)
T PRK12316 2209 LLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR-PP--AVRVYCFGGEAVPAASLRLAWEAL 2285 (5163)
T ss_pred HhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcccC-Cc--ceeEEEEecccCCHHHHHHHHHhC
Confidence 999999966653 6899999999999999999999999999876533222 22 8999999999999999999874 3
Q ss_pred -CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcc
Q 044926 330 -GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCI 408 (569)
Q Consensus 330 -~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 408 (569)
+..+++.||+||++..++....... ........++|.|.++. .++|+|+ ++..++.| ++|||+|+|+.+
T Consensus 2286 ~~~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~i~d~-~~~~vp~g--~~GEl~i~G~~v 2355 (5163)
T PRK12316 2286 RPVYLFNGYGPTEAVVTPLLWKCRPQ------DPCGAAYVPIGRALGNR-RAYILDA-DLNLLAPG--MAGELYLGGEGL 2355 (5163)
T ss_pred CCcEEEECccchhheeeeeeeecccc------cccCCCcCCcccccCCC-EEEEECC-CCCCCCCC--CeeEEEecchhh
Confidence 6889999999999766554321110 00011124689999998 9999997 67888888 899999999999
Q ss_pred cccccCCccccccccCC-------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 409 MLGYLKDPIGTRKCMTD-------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 409 ~~gy~~~~~~~~~~~~~-------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
++||+++|+.+...|.. ++||+|||+|++++||.++++||.|++||++|++|++.+||.+|.++|+|.+++|+
T Consensus 2356 ~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~ 2435 (5163)
T PRK12316 2356 ARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVV 2435 (5163)
T ss_pred cccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEE
Confidence 99999999999988842 35999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
+.++. .++.++++|+..++.. ...++++++++++||.|++|..++.+++||+|++||++|++|++..
T Consensus 2436 ~~~~~-~~~~l~a~v~~~~~~~--~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316 2436 AQDGA-SGKQLVAYVVPDDAAE--DLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred EEecC-CCeEEEEEEEecCCCc--cCHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCCc
Confidence 98766 5788999999877654 6789999999999999999999999999999999999999997653
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=488.79 Aligned_cols=506 Identities=26% Similarity=0.378 Sum_probs=418.6
Q ss_pred HHHHHHHHc-CCCCeEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 19 FLERAATVY-GDSPSIIYNN------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 19 ~l~~~a~~~-p~~~al~~~~------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
.+.++.+.. ++.+++++.+ ..+||.|+.+++.++|..|.+.|+++||+|++++|+.++++++++||+++|++.
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~ 148 (626)
T KOG1175|consen 69 CLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIH 148 (626)
T ss_pred hhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEE
Confidence 344443333 8889998853 459999999999999999998899999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccH---------HHHHHHHhcCCCCCC-CCCEEEEeCCCcccccccCCCCCC
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSR---------ALVREAVSLFPPDLK-PPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
+++-..+++.++...++.++++++|+.+... ....++......... ....+.+.....
T Consensus 149 ~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------ 216 (626)
T KOG1175|consen 149 SSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNR------------ 216 (626)
T ss_pred EEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccc------------
Confidence 9999999999999999999999999976432 222222222221110 011111111110
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHH-HHHHHhhhhccCCCCCCCEEEEecCc
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRG-IFIVAVNTLSDWSVPTQPVYLWTLPM 240 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~-l~~~~~~~~~~~~~~~~d~~~~~~pl 240 (569)
...+++.+....+... +...+.+|+.+|+|||||||.||++.+++.. ++..+......+.++++|++++....
T Consensus 217 -----d~~~~~~~~~a~~~~~-~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~ 290 (626)
T KOG1175|consen 217 -----DLFWSLELKKASPEHP-CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDL 290 (626)
T ss_pred -----cccHHHHhhhcCCCCC-ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEeccc
Confidence 1344555444444443 4557788999999999999999999999876 45555666667889999999999999
Q ss_pred hhhhhhhH-HHHHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCC
Q 044926 241 FHSNGWCF-PWAMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAP 317 (569)
Q Consensus 241 ~~~~g~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~ 317 (569)
-|+.+.++ .++.++.|+++++.+ ++++..+++.+.++++|++++.|+.++.|.+.........++.+||.+.+.||+
T Consensus 291 GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gep 370 (626)
T KOG1175|consen 291 GWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEP 370 (626)
T ss_pred CeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCcc
Confidence 99998887 566899999999885 469999999999999999999999999888887666555555589999999999
Q ss_pred CcHHHHHHHH-hcCC-eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCC
Q 044926 318 PPAAVLLRTE-SLGF-KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDG 395 (569)
Q Consensus 318 l~~~~~~~~~-~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~ 395 (569)
+.++...++. .++. +|++.||+||+|+.++.+..... ...+.+.+.|.++. .+.|+|+ +|+.++.++
T Consensus 371 i~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~---------p~~pg~~~~p~~g~-~v~i~de-~g~~~~~~~ 439 (626)
T KOG1175|consen 371 INPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL---------PIKPGSAGKPFPGY-DVQILDE-NGNELPPST 439 (626)
T ss_pred CCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC---------CcCccccCCCCCCc-ceEEECC-CCCCcCCCC
Confidence 9999999998 5666 69999999999999998754321 34567889999999 9999998 788887765
Q ss_pred CceeEEEEecC---cccccccCCccccccccC--CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHH
Q 044926 396 STLGEIVLRGG---CIMLGYLKDPIGTRKCMT--DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470 (569)
Q Consensus 396 ~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~ 470 (569)
+.|+|+++.+ +.+++||++++..+.... -.|+|.|||.+++|+||+++++||.||+|+++|.++++.|||+++.
T Consensus 440 -~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~ 518 (626)
T KOG1175|consen 440 -GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALV 518 (626)
T ss_pred -ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHh
Confidence 7899999984 679999999984444433 2789999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEecCCCCCCceeEEEEEecCCCCC-CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 471 ~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
+||.|.|++||+.+++..|+.+++||+++++... +...++|+.++|+.+.++..|+.|.++++||+|.+||+.|+.||+
T Consensus 519 ~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrk 598 (626)
T KOG1175|consen 519 EHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRK 598 (626)
T ss_pred hCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHH
Confidence 9999999999999999999999999999998542 234477888999999999999999999999999999999999999
Q ss_pred HHHhc
Q 044926 550 IAENM 554 (569)
Q Consensus 550 ~~~~~ 554 (569)
.....
T Consensus 599 i~~g~ 603 (626)
T KOG1175|consen 599 IASGK 603 (626)
T ss_pred HhccC
Confidence 88776
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-63 Score=606.82 Aligned_cols=496 Identities=21% Similarity=0.262 Sum_probs=416.1
Q ss_pred CCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 9 ANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
....+.++.++|+++++.+|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|
T Consensus 507 ~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lail~aG 586 (3956)
T PRK12467 507 TEYAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAG 586 (3956)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 33466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccc
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (569)
++++|++|.++.+++.+++++++++++|++.+....+ .... ...++.+.....
T Consensus 587 ~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~-------~~~~-~~~~~~~~~~~~------------------- 639 (3956)
T PRK12467 587 GAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQL-------PVPA-GLRSLCLDEPAD------------------- 639 (3956)
T ss_pred cEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhc-------cccc-CccEEEeccccc-------------------
Confidence 9999999999999999999999999999987433221 1000 112222221110
Q ss_pred hhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH
Q 044926 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF 248 (569)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~ 248 (569)
..... ....+.....++++++++|||||||.||||.++|+++...+.+....+++..+|+++...|++|..+...
T Consensus 640 ----~~~~~-~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~ 714 (3956)
T PRK12467 640 ----LLCGY-SGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTE 714 (3956)
T ss_pred ----ccccc-CCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHH
Confidence 00000 0011112356789999999999999999999999999999988888899999999999999999999988
Q ss_pred HHHHHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 249 PWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 249 ~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
.+.+++.|+++++.+. .++..+++.|+++++|++.++|+++..+.+..... ... ++|.+++|||++++++.+.
T Consensus 715 ~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~--~lr~i~~gGe~l~~~~~~~ 790 (3956)
T PRK12467 715 LFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA--LPR--PQRALVCGGEALQVDLLAR 790 (3956)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc--cCC--cccEEEEEeecCCHHHHHH
Confidence 9999999999999864 68999999999999999999999999998754322 223 7799999999999999999
Q ss_pred HHhc--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEE
Q 044926 326 TESL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403 (569)
Q Consensus 326 ~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 403 (569)
+.+. +++++|.||+||++..++....... ........+|.|.++. .++|+|+ .+.+++.| +.|||+|
T Consensus 791 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~vp~G--~~GEL~i 859 (3956)
T PRK12467 791 VRALGPGARLINHYGPTETTVGVSTYELSDE-------ERDFGNVPIGQPLANL-GLYILDH-YLNPVPVG--VVGELYI 859 (3956)
T ss_pred HHHhCCCCEEEeCcCCChhhhheeeEecccc-------cccCCCCcccCCcCCC-EEEEECC-CCCCCCCC--CceEEEe
Confidence 8853 6899999999999877665432211 0011135689999998 9999997 67888887 8999999
Q ss_pred ecCcccccccCCccccccccCC-------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcc
Q 044926 404 RGGCIMLGYLKDPIGTRKCMTD-------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVN 476 (569)
Q Consensus 404 ~~~~~~~gy~~~~~~~~~~~~~-------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~ 476 (569)
+|+.+++||+++|+.+..+|.. .+||+|||+|++++||.++++||.|++||++|++|++.+||..|.++|+|.
T Consensus 860 ~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~ 939 (3956)
T PRK12467 860 GGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVR 939 (3956)
T ss_pred cccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcc
Confidence 9999999999999999988842 349999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCceeEEEEEecCC---CCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHH
Q 044926 477 EAAVVARPDEFWGETPCAFVSLKEG---SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 477 ~~~v~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~ 552 (569)
+++|++.+.. .+..++++++.... .......++++++++++|+.|++|..++++++||+|++||++|++|++...
T Consensus 940 ~a~v~~~~~~-~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 1017 (3956)
T PRK12467 940 EAVVLAQPGD-AGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPDA 1017 (3956)
T ss_pred eEEEEEEcCC-CCcEEEEEEEecccccccccccCHHHHHHHHHhhCchhcCCceEeeecccCCCCCCCcCHhhcCCccc
Confidence 9999996544 36678888885432 122256789999999999999999999999999999999999999987543
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=507.08 Aligned_cols=488 Identities=28% Similarity=0.385 Sum_probs=400.5
Q ss_pred CeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhc
Q 044926 31 PSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHC 110 (569)
Q Consensus 31 ~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 110 (569)
+++.+.++.+||.||.+.++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++++
T Consensus 3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~ 82 (502)
T PRK08276 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDS 82 (502)
T ss_pred eEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcC
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCC
Q 044926 111 QSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEW 190 (569)
Q Consensus 111 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (569)
+++.+|+++.......+........ ...++....... ....+++........ .....+
T Consensus 83 ~~~~ii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~~~ 140 (502)
T PRK08276 83 GAKVLIVSAALADTAAELAAELPAG--VPLLLVVAGPVP----------------GFRSYEEALAAQPDT----PIADET 140 (502)
T ss_pred CCCEEEEccchhhHHHHHhhhcccc--ccEEEEeCCCCC----------------ccccHHHHHhcCCCC----CCCCCC
Confidence 9999999988776665544333211 233333321110 023344443322111 123456
Q ss_pred CceEEEecCCCCCCCceEEEchHHHHHHH------hhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc
Q 044926 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVA------VNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK 264 (569)
Q Consensus 191 ~~a~i~~TSGtTG~pk~v~~t~~~l~~~~------~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~ 264 (569)
+.++++|||||||.||+|.++|.++.... ............+++++..|++|..++...+.++..|+++++.+.
T Consensus 141 ~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 220 (502)
T PRK08276 141 AGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEK 220 (502)
T ss_pred cceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCC
Confidence 78999999999999999999987754322 112222223567899999999999998888888889999988888
Q ss_pred CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccccc
Q 044926 265 FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETG 343 (569)
Q Consensus 265 ~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~ 343 (569)
+++..+++.++++++|++.++|+++..+.+..........+.++|.++++|++++.++++++. .++..+++.||+||++
T Consensus 221 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~ 300 (502)
T PRK08276 221 FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGG 300 (502)
T ss_pred CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhccccccc
Confidence 999999999999999999999999999988764433333445999999999999999999988 4688899999999998
Q ss_pred cceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccccc
Q 044926 344 GIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423 (569)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~ 423 (569)
++++..... .......+|.|. +. .++|+|+ ++.+++.| +.|||+++|++++.||+++++.+...+
T Consensus 301 ~~~~~~~~~----------~~~~~~~~G~~~-~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~ 365 (502)
T PRK08276 301 GVTVITSED----------WLAHPGSVGKAV-LG-EVRILDE-DGNELPPG--EIGTVYFEMDGYPFEYHNDPEKTAAAR 365 (502)
T ss_pred ceeEecCcc----------ccccCCCcceec-cc-EEEEECC-CCCCCcCC--CceEEEEECCCccchhcCCHHHHHHHh
Confidence 765543211 111235678888 66 9999996 67777776 899999999999999999999998888
Q ss_pred CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCC
Q 044926 424 TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK 503 (569)
Q Consensus 424 ~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 503 (569)
.+++||+|||+|+++++|.+++.||.+++++.+|.++++.+||.++.++|+|.++++++..++..++.++++|+..++..
T Consensus 366 ~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 445 (502)
T PRK08276 366 NPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGAD 445 (502)
T ss_pred cCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCC
Confidence 86799999999999999999999999999999999999999999999999999999999999888899999999876543
Q ss_pred -CCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 504 -SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 504 -~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
.+...+++++.++++++.+++|..++++++||+|++||++|++|++.+....
T Consensus 446 ~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 498 (502)
T PRK08276 446 AGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGR 498 (502)
T ss_pred CChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhh
Confidence 1123458999999999999999999999999999999999999999976543
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=536.30 Aligned_cols=493 Identities=17% Similarity=0.190 Sum_probs=379.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.+.+|+.++|.++++.+||++|+++.++.+||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++|++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav 523 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV 523 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|. +++.++++.++++++|++.+..+.+.+ . ...+++++....... ..........+
T Consensus 524 ~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~----~-----~~~iiv~~~~~~~~~-------~~~~~~~~~~~ 584 (994)
T PRK07868 524 AVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQ----L-----PGRVLVLGGGESRDL-------DLPDDADVIDM 584 (994)
T ss_pred EEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHh----c-----CceEEEecCCccccc-------cCCcchhhhhh
Confidence 9999985 578999999999999998766554322 1 234555432211000 00000000111
Q ss_pred hHhhhcCCCCcc--cCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH
Q 044926 171 ESLVAKGDPEFE--WIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF 248 (569)
Q Consensus 171 ~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~ 248 (569)
++.......... ...+..++|+++|+|| ||||.||++.++|.++..........+++..+|++++..|++|.+++..
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~ 663 (994)
T PRK07868 585 EKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLV 663 (994)
T ss_pred hhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHH
Confidence 111111000000 0011235799999998 6888888888888776655555556678899999999999999999987
Q ss_pred HHHHHHhCceEEE-eccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH
Q 044926 249 PWAMAAVGGTNIC-IRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE 327 (569)
Q Consensus 249 ~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~ 327 (569)
.+..++.|++.++ .+.++++.+++.|+++++|++.++|+++..|++........+. ++|.++ |+.+++.+.+++.
T Consensus 664 ~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~--slr~~~--g~gl~~~l~~~~~ 739 (994)
T PRK07868 664 SLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNH--PVRLFI--GSGMPTGLWERVV 739 (994)
T ss_pred HHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCC--ceEEEe--cCCCCHHHHHHHH
Confidence 6666666666554 4568999999999999999999999999999876433333343 788765 3448999998887
Q ss_pred -hcC-CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEe--CC--------CCC--cccCC
Q 044926 328 -SLG-FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVL--DP--------KSG--VSAKR 393 (569)
Q Consensus 328 -~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~--d~--------~~~--~~~~~ 393 (569)
.++ +++++.||+||++...... . .....++|.|.++..+++|. |+ ++| ..++.
T Consensus 740 ~~~~~~~l~~~YG~TE~~~~~~~~---~----------~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ 806 (994)
T PRK07868 740 EAFAPAHVVEFFATTDGQAVLANV---S----------GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEV 806 (994)
T ss_pred HHhCchheeeeeeccccccccccc---C----------CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCC
Confidence 454 8899999999986433211 0 11235789999986445543 22 234 33444
Q ss_pred CCCceeEEEEecCcccccccCCcccc--ccccC-CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHH
Q 044926 394 DGSTLGEIVLRGGCIMLGYLKDPIGT--RKCMT-DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470 (569)
Q Consensus 394 ~~~~~Gel~v~~~~~~~gy~~~~~~~--~~~~~-~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~ 470 (569)
| +.|||+++++.. + +++.+ ...|. .+|||+|||+|++|+||+|+++||.||+||++|.+|+|.+||++|.
T Consensus 807 g--e~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~ 879 (994)
T PRK07868 807 N--EVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALG 879 (994)
T ss_pred C--CceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHh
Confidence 5 899999999753 2 23222 11232 3799999999999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 471 ~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
+||+|.+++|++.+++. ++.++++|++.++.. .+.++|++++++ ++.|++|+.|+++++||+|++||++|++|++.
T Consensus 880 ~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~--~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~ 955 (994)
T PRK07868 880 RIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAA--ITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAA 955 (994)
T ss_pred cCCCeeEEEEEeecCCC-CceEEEEEEeCCCCc--CCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhc
Confidence 99999999999998875 577889999887654 678999999986 99999999999999999999999999999866
Q ss_pred H
Q 044926 551 A 551 (569)
Q Consensus 551 ~ 551 (569)
.
T Consensus 956 ~ 956 (994)
T PRK07868 956 G 956 (994)
T ss_pred C
Confidence 3
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=486.56 Aligned_cols=522 Identities=22% Similarity=0.254 Sum_probs=415.9
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNN--------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELH 81 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~--------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~ 81 (569)
...+.|+++.|.+.+..+|+.+++-... +.+||+|..+++..++..|+..|+++++.|+|+..|++||+++.
T Consensus 71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~ 150 (691)
T KOG1256|consen 71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE 150 (691)
T ss_pred CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence 4688999999999999999999996533 68999999999999999999999999999999999999999999
Q ss_pred HHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEcc-ccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCC
Q 044926 82 FAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF-HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160 (569)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (569)
.||...|.++||+..+++++.+.+++++++.+++|++. +....+.+..... ....++.++.++...... ....
T Consensus 151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~-~~~~LK~iI~~~~~~~~~-----~~~~ 224 (691)
T KOG1256|consen 151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKEND-SLPSLKAIIQLDEPSDEL-----KEKA 224 (691)
T ss_pred HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccc-cCccceeEEEecCCchhh-----hhhh
Confidence 99999999999999999999999999999999999994 3444433333211 122267788887765322 1122
Q ss_pred CCCCcccchhhHhhhcCCCCcccC-CCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cC---CCCCCCE
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWI-RPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DW---SVPTQPV 233 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~---~~~~~d~ 233 (569)
...+..+.+|+++++.+....... .+..++|.|.|.|||||||.||||.+||+|+...+..... .. .....|+
T Consensus 225 ~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv 304 (691)
T KOG1256|consen 225 ENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDV 304 (691)
T ss_pred hcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCce
Confidence 334456889999999886554444 4788999999999999999999999999999875543211 11 2234799
Q ss_pred EEEecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCC----C----------
Q 044926 234 YLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP----D---------- 299 (569)
Q Consensus 234 ~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~----~---------- 299 (569)
+++.+|+.|++....-...+..|+.+.+.. -|+..+.+.|+..+||++.++|.+|+++-+-... .
T Consensus 305 ~lSyLPLAHi~er~~~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~ 383 (691)
T KOG1256|consen 305 YLSYLPLAHIFERVVELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNF 383 (691)
T ss_pred EEEeCcHHHHHHHHHHHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999998888888899888876 4899999999999999999999999987553210 0
Q ss_pred ------------CCCC---C--------------cCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccccccceeec
Q 044926 300 ------------KKPL---K--------------LAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGIVVSC 349 (569)
Q Consensus 300 ------------~~~~---~--------------~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~ 349 (569)
+... . ..++|.+++|++++++++...++ .++++|+++||+||+.+.++..
T Consensus 384 A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~ 463 (691)
T KOG1256|consen 384 AMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLT 463 (691)
T ss_pred HHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEec
Confidence 0010 0 26899999999999999999999 5689999999999998444443
Q ss_pred ccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCee
Q 044926 350 AWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWF 429 (569)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 429 (569)
..+ .....++|.|.|++ +++++|..+-..-..+ ..|||+|+|++++.||+++|+.|.+.+++|||+
T Consensus 464 ~~~-----------d~~lgsvG~p~p~~-~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWL 529 (691)
T KOG1256|consen 464 LPG-----------DNVLGSVGPPVPGN-EVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWL 529 (691)
T ss_pred cCC-----------CCCCCCcCCcccCc-eEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccccc
Confidence 211 11457899999999 9999988776666666 579999999999999999999999999999999
Q ss_pred eecceEEEecCCcEEEeccCCCeEE-eCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC----
Q 044926 430 YTGDVGVMHSDGYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS---- 504 (569)
Q Consensus 430 ~TGD~~~~~~dg~l~~~GR~~~~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---- 504 (569)
+|||+|+++++|.+.+.||.+++|| ..|+.|.|+.||++..+.+.|.+.+|.+.... ..++++|++++....
T Consensus 530 hTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e~~~~~a~ 606 (691)
T KOG1256|consen 530 HTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPEVLKSWAA 606 (691)
T ss_pred ccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChhhchhhHH
Confidence 9999999999999999999999999 89999999999999999999999999988653 458888888654221
Q ss_pred -CCCH-----------------HHHHHHHh-ccCCCCccccEEEEec---ccC---CCCCCcccHHHHHHHHHhcC
Q 044926 505 -KPTE-----------------KEMIEYCR-GRLPHYMVPKTVVFMD---ELP---KTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 505 -~~~~-----------------~~l~~~l~-~~l~~~~~p~~~~~~~---~iP---~t~~GKi~r~~l~~~~~~~~ 555 (569)
.... +++.+.-+ +.+..+.....+.+.. ++. +||+=|+.|..+.+.|++..
T Consensus 607 ~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~I 682 (691)
T KOG1256|consen 607 KDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQI 682 (691)
T ss_pred HccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHH
Confidence 0011 11111111 2344555566565542 122 67899999999999998764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=548.44 Aligned_cols=499 Identities=22% Similarity=0.256 Sum_probs=400.2
Q ss_pred CCCchHHHHHHHHHHcCC-CCeEEe-CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 12 TPLTPLVFLERAATVYGD-SPSIIY-NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~-~~al~~-~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
.+.++.+.|.++++++|+ +.++.+ .++.+||+||.++++++|+.|.+ |+++||+|+++++|+++++++++||+++|+
T Consensus 629 ~~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 707 (1140)
T PRK06814 629 YDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGR 707 (1140)
T ss_pred ccCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCC
Confidence 457788999999999975 566665 35799999999999999999976 999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHH--HHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCccc
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALV--REAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFF 167 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (569)
++++++|..+.+++.+++++++++++|++++..+.. ......... ...++.+++..... ...
T Consensus 708 v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~-------------~~~ 771 (1140)
T PRK06814 708 VPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEF---GIRIIYLEDVRAQI-------------GLA 771 (1140)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhcc---CceEEEehHhhccC-------------ChH
Confidence 999999999999999999999999999987654321 111111111 23344433211000 000
Q ss_pred chhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhh
Q 044926 168 STYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWC 247 (569)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~ 247 (569)
..+.+......+... .....++|+++++|||||||.||+|.++|+++..........++++.+|++++.+|++|..++.
T Consensus 772 ~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 850 (1140)
T PRK06814 772 DKIKGLLAGRFPLVY-FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLT 850 (1140)
T ss_pred HHHHHHhhccCCccc-cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHH
Confidence 111222211111111 1124678999999999999999999999999998888888888999999999999999999984
Q ss_pred H-HHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 248 F-PWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 248 ~-~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
. .+.++..|+++++.+. .+...+.+.++++++|++.++|+++..+.+.. ...++. ++|.+++||+++++++.+.
T Consensus 851 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~--~lr~v~~gg~~l~~~~~~~ 926 (1140)
T PRK06814 851 GGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFR--SLRYVFAGAEKVKEETRQT 926 (1140)
T ss_pred HHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--cccccc--ceeEEEEcCCcCCHHHHHH
Confidence 4 6677888999888764 56778899999999999999999999988753 223344 8999999999999999998
Q ss_pred HH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEe
Q 044926 326 TE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404 (569)
Q Consensus 326 ~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 404 (569)
+. .+++++++.||+||++..+..+... .....++|.|.+++ ++++.+.+ + .+ +.|||+++
T Consensus 927 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~g~-~~~~~~~~-~----~~--~~Gel~v~ 987 (1140)
T PRK06814 927 WMEKFGIRILEGYGVTETAPVIALNTPM-----------HNKAGTVGRLLPGI-EYRLEPVP-G----ID--EGGRLFVR 987 (1140)
T ss_pred HHHHhCCcEEeccccccccceEEecCCC-----------CCCCCcCCccCCCC-eEEEeecC-C----CC--CceEEEEe
Confidence 87 5799999999999998766543211 11235789999998 89987753 2 12 67999999
Q ss_pred cCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecC
Q 044926 405 GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484 (569)
Q Consensus 405 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 484 (569)
|++++.||+++++........+|||+|||+|++|+||++++.||.||+||.+|++|+|.+||+++.+++++.+++|++.+
T Consensus 988 g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~ 1067 (1140)
T PRK06814 988 GPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIP 1067 (1140)
T ss_pred CCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcc
Confidence 99999999987654332223489999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 485 DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 485 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
++..|+.+++++. ..+ .+.++++++++++ ++.+++|..++++++||+|++||++|++|+++..+...
T Consensus 1068 ~~~~g~~~~~~~~---~~~--~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 1135 (1140)
T PRK06814 1068 DARKGERIILLTT---ASD--ATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAA 1135 (1140)
T ss_pred cCCCCceEEEEEc---CCC--cCHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhc
Confidence 9888887766654 222 5678899999864 99999999999999999999999999999999887654
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-62 Score=604.02 Aligned_cols=495 Identities=17% Similarity=0.201 Sum_probs=415.4
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
...+++++|.+++.++|+++|+++.+..+||+||+++++++|+.|.+.|+++|++|+|+++++++++++++|++++|+.+
T Consensus 3718 ~~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~ 3797 (4334)
T PRK05691 3718 LEQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGY 3797 (4334)
T ss_pred cccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
||++|+++.+++.+++++++++++|++.................. .+.++...+...
T Consensus 3798 vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------- 3854 (4334)
T PRK05691 3798 LPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCAN-RPRLLVWEEVQA---------------------- 3854 (4334)
T ss_pred eCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhccccccc-ccceeeeccccc----------------------
Confidence 999999999999999999999999999876554433332221110 112222111100
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWA 251 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~ 251 (569)
.............+++.|+|+|||||||.||||+++|+++.+.+.+....+++++.|+++...++++..++...+.
T Consensus 3855 ----~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~ 3930 (4334)
T PRK05691 3855 ----GEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLA 3930 (4334)
T ss_pred ----ccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHH
Confidence 0000011112246789999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh
Q 044926 252 MAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES 328 (569)
Q Consensus 252 ~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~ 328 (569)
+++.|+++++++. .++..+++.++++++|++..+|+++..++... ...+. ++|.+++|||.+++.+.++|.+
T Consensus 3931 ~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~--~lr~~~~gGe~l~~~~~~~~~~ 4005 (4334)
T PRK05691 3931 APLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALD--GLRWMLPTGEAMPPELARQWLQ 4005 (4334)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCC--CceEEEecCCcCCHHHHHHHHH
Confidence 9999999998864 57899999999999999999999999887542 22344 8999999999999999998874
Q ss_pred --cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 329 --LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 329 --~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
.+++++|.||+||++..++....... ........+|.|.++. .+.|+|. .+..++.| ..|||+|+|+
T Consensus 4006 ~~~~~~l~n~YG~TE~t~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~v~d~-~~~~~p~g--~~GEL~i~G~ 4074 (4334)
T PRK05691 4006 RYPQIGLVNAYGPAECSDDVAFFRVDLA-------STRGSYLPIGSPTDNN-RLYLLDE-ALELVPLG--AVGELCVAGT 4074 (4334)
T ss_pred hCCCCeEEeCccCccceeEEEEEEcccc-------cccCCcCCCCCccCCC-EEEEECC-CCCCCCCC--CceEEEEecc
Confidence 37899999999999876654432211 1111234689999998 9999996 78888888 8999999999
Q ss_pred cccccccCCccccccccC-------CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 407 CIMLGYLKDPIGTRKCMT-------DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~-------~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
.+++||+++|+.+..+|. +++||+|||+|++++||.++++||.|++||++|.+|.+.|||..|.++|+|.+++
T Consensus 4075 ~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~ 4154 (4334)
T PRK05691 4075 GVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAA 4154 (4334)
T ss_pred cccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEE
Confidence 999999999999999884 2469999999999999999999999999999999999999999999999999988
Q ss_pred EEecCCCCCCceeEEEEEecCCCCC-CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 480 VVARPDEFWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 480 v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
|+.... ..++.++++++....... ....++++.+++++||.|++|..++.+++||+|++||+||++|++.
T Consensus 4155 v~~~~~-~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4155 VAVQEG-VNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred EEEecC-CCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence 876644 346788899887654321 1235789999999999999999999999999999999999999764
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-62 Score=604.65 Aligned_cols=491 Identities=19% Similarity=0.240 Sum_probs=414.8
Q ss_pred CCCCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q 044926 6 PSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVP 85 (569)
Q Consensus 6 ~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~ 85 (569)
.......+.++.++|+++++.+|+++|+.+.++.+||+||.++++++|..|.+.|+++|++|+|+++|+++++++++||+
T Consensus 1123 ~~~~~~~~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lail 1202 (4334)
T PRK05691 1123 QAPCAPAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAIL 1202 (4334)
T ss_pred CCCCCCccCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 33344456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 86 FAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
++|++++|++|.++.+++.+++++++++++|++......+... . ....+.+.....
T Consensus 1203 kaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~----~----~~~~~~~~~~~~---------------- 1258 (4334)
T PRK05691 1203 KAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA----E----GVSAIALDSLHL---------------- 1258 (4334)
T ss_pred HhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc----c----CceEEeeccccc----------------
Confidence 9999999999999999999999999999999987654322110 0 011111111000
Q ss_pred ccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhh
Q 044926 166 FFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g 245 (569)
..+ ....+.....++++++++|||||||.||||.++|+++...+.+....++++++|+++...|++|..+
T Consensus 1259 --~~~--------~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691 1259 --DSW--------PSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred --ccc--------CCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHH
Confidence 000 0001111245679999999999999999999999999998888888899999999999999999999
Q ss_pred hhHHHHHHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHH
Q 044926 246 WCFPWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
+...+.+++.|+++++.++ .++..+++.++++++|++.++|+++..+.+... ...+. ++|.+++||+++++.+
T Consensus 1329 ~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~--~lr~~~~gGe~l~~~~ 1404 (4334)
T PRK05691 1329 VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACT--SLRRLFSGGEALPAEL 1404 (4334)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCC--cccEEEEeecCCCHHH
Confidence 8888999999999999753 689999999999999999999999999986532 22344 8999999999999999
Q ss_pred HHHHH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeE
Q 044926 323 LLRTE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400 (569)
Q Consensus 323 ~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 400 (569)
.+++. .+ +++++|.||+||++..++...... .......+|.|.++. .++|+|. .+..++.| +.||
T Consensus 1405 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---------~~~~~~~iG~p~~~~-~~~i~d~-~~~~vp~G--~~GE 1471 (4334)
T PRK05691 1405 RNRVLQRLPQVQLHNRYGPTETAINVTHWQCQA---------EDGERSPIGRPLGNV-LCRVLDA-ELNLLPPG--VAGE 1471 (4334)
T ss_pred HHHHHHhCCCcEEEeCCCcChheeeeeeeeccc---------ccCCCCcccceeCCC-EEEEECC-CCCCCCCC--CceE
Confidence 99887 44 789999999999976655322110 111234689999998 9999997 67888888 8999
Q ss_pred EEEecCcccccccCCccccccccCC-------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCC
Q 044926 401 IVLRGGCIMLGYLKDPIGTRKCMTD-------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNP 473 (569)
Q Consensus 401 l~v~~~~~~~gy~~~~~~~~~~~~~-------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~ 473 (569)
|+|+|+.+++||+++++.+...|.. .+||+|||+|++++||.++++||.|++||++|++|++.+||.+|.++|
T Consensus 1472 L~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~ 1551 (4334)
T PRK05691 1472 LCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQP 1551 (4334)
T ss_pred EEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCC
Confidence 9999999999999999999988842 359999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 474 AVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 474 ~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
+|.+++|++..+.. +..++++++...+.. ...++++++++++|+.|++|..++.+++||+|++||++|++|++.
T Consensus 1552 ~V~~a~v~~~~~~~-~~~lva~~~~~~~~~--~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1552 GVAQAAVLVREGAA-GAQLVGYYTGEAGQE--AEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred CcceEEEEEeeCCC-CCEEEEEEEeCCCCC--CCHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence 99999999776543 577888888776544 567899999999999999999999999999999999999999764
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=500.79 Aligned_cols=457 Identities=17% Similarity=0.149 Sum_probs=346.2
Q ss_pred cCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEcccc------HHHHHHHHhcCCCCCCCCCEEEE
Q 044926 71 SPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS------RALVREAVSLFPPDLKPPPLVLI 144 (569)
Q Consensus 71 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 144 (569)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.. .+.+.+..... ....+++
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~ 75 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAA-----PAKAIVL 75 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcc-----cceEEEE
Confidence 589999999999999999999999999999999999999999999998642 12222221111 1122222
Q ss_pred eCCCcccccccCCCCCCCCCcccchhhHhhhcCCC------CcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHH
Q 044926 145 SDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP------EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIV 218 (569)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~ 218 (569)
....... ..........+.++++.... .........++|+++|+|||||||.||||.+||++++..
T Consensus 76 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~ 147 (499)
T PLN03051 76 PAAGEPV--------AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRC 147 (499)
T ss_pred eccCccc--------CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHH
Confidence 2111000 00000001235554421110 000011134689999999999999999999999998776
Q ss_pred HhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCC
Q 044926 219 AVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD 297 (569)
Q Consensus 219 ~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~ 297 (569)
+......+++..+|++++..|++|..++...+.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|++...
T Consensus 148 ~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~ 227 (499)
T PLN03051 148 ASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGA 227 (499)
T ss_pred HHHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCc
Confidence 6555566788899999999999999998777788899999988864 788999999999999999999999999987542
Q ss_pred --CCCCCCCcCCCceEEEeCCCCcHHHHHHHHh-c--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCc
Q 044926 298 --PDKKPLKLAKPVHLVTAGAPPPAAVLLRTES-L--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV 372 (569)
Q Consensus 298 --~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~-~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 372 (569)
....+++ ++|.+++||++++++..+++++ . ++.+++.||+||+++.+...... ......++|.
T Consensus 228 ~~~~~~~~~--~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~ 295 (499)
T PLN03051 228 FAMEGLDWS--KLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLL----------QPQAPGAFST 295 (499)
T ss_pred cccccCCch--hheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccccc----------CCCCCccccC
Confidence 2223344 9999999999999999887765 3 47899999999986543321100 0112357899
Q ss_pred ccccceeeEEeCCCCCcccCCCCCceeEEEEecCcc--cccccCCccccccccCC--------CCeeeecceEEEecCCc
Q 044926 373 KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCI--MLGYLKDPIGTRKCMTD--------DGWFYTGDVGVMHSDGY 442 (569)
Q Consensus 373 ~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~--------~~~~~TGD~~~~~~dg~ 442 (569)
|.++. +++|+|+ +|.+++.|+++.|||+++||.+ +.||++++. +...+.+ .+||+|||+|++|+||+
T Consensus 296 p~~~~-~~~ivd~-~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~ 372 (499)
T PLN03051 296 ASLGT-RFVLLND-NGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGY 372 (499)
T ss_pred CCCCc-eEEEECC-CCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCc
Confidence 99998 9999996 6777877644589999999976 589998653 3222211 12799999999999999
Q ss_pred EEEeccCCCeEEeCceeeeHHHHHHHHHc-CCCcceeEEEecCCCCCC-ceeEEEE---EecCCCCCCCCHHHHHHHH--
Q 044926 443 LEIKDRSKDVIISGGENLSSVEVESVLYS-NPAVNEAAVVARPDEFWG-ETPCAFV---SLKEGSKSKPTEKEMIEYC-- 515 (569)
Q Consensus 443 l~~~GR~~~~i~~~G~~v~~~~iE~~l~~-~~~i~~~~v~~~~~~~~~-~~~~~~v---~~~~~~~~~~~~~~l~~~l-- 515 (569)
+++.||.+|+||++|++|+|.|||++|.+ ||+|.+++|++.+++.+| +.++++| +++++.. ....++++++|
T Consensus 373 l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~-~~~~~~l~~~~~~ 451 (499)
T PLN03051 373 FCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFD-QARPEALQKKFQE 451 (499)
T ss_pred EEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceeccccc-ccchHHHHHHHHH
Confidence 99999999999999999999999999996 999999999999999888 5788888 6665531 14556676665
Q ss_pred --hccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 516 --RGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 516 --~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
+++|+.+..|..++++++||+|++||++|++|++.+.+...
T Consensus 452 ~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 494 (499)
T PLN03051 452 AIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKELS 494 (499)
T ss_pred HHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhhc
Confidence 45677766667799999999999999999999998877765
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=516.01 Aligned_cols=501 Identities=19% Similarity=0.190 Sum_probs=376.4
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNN------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
..+.|+.++|+++++.+||++|+++.+ +.+||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++||
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 125 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAA 125 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 457789999999999999999998743 68999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCH-----HHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 85 PFAAAVLNTINTRLDA-----RTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
+++|++++|++|.++. +++.++++.++++++|++.... +.......... ...++.+......
T Consensus 126 ~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~--~~~~i~~~~~~~~--------- 192 (624)
T PRK12582 126 MQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP--FARALAALDLL--DVTVVHVTGPGEG--------- 192 (624)
T ss_pred HHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH--HHHHHHhhhhc--CceEEEEcCCCcc---------
Confidence 9999999999999874 8999999999999999986421 11111111110 1223333221100
Q ss_pred CCCCCcccchhhHhhhcCCCCc--ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCC---CCEE
Q 044926 160 NISDDQFFSTYESLVAKGDPEF--EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT---QPVY 234 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~---~d~~ 234 (569)
.....+.++........ .......++++++|+|||||||.||||.+||+++..+.......+.... .+++
T Consensus 193 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (624)
T PRK12582 193 -----IASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVS 267 (624)
T ss_pred -----cccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceE
Confidence 00133444443222110 0111245689999999999999999999999999877665544444433 5799
Q ss_pred EEecCchhhhhhhHH-HHHHHhCceEEEecc-CCH---HHHHHHHHHhCcceeechhHHHHHHHcCCCCCCC--CCCcCC
Q 044926 235 LWTLPMFHSNGWCFP-WAMAAVGGTNICIRK-FDA---SIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK--PLKLAK 307 (569)
Q Consensus 235 ~~~~pl~~~~g~~~~-~~~~~~g~~~~~~~~-~~~---~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~--~~~~~~ 307 (569)
+..+|++|.+|+... +..+..|+++++.+. +++ ..+++.++++++|++.++|.++..|++....... ...+++
T Consensus 268 l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~s 347 (624)
T PRK12582 268 LDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKN 347 (624)
T ss_pred EEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhh
Confidence 999999999998664 456677888877642 333 4567778899999999999999988764322211 111338
Q ss_pred CceEEEeCCCCcHHHHHHHHhc-------CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceee
Q 044926 308 PVHLVTAGAPPPAAVLLRTESL-------GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEV 380 (569)
Q Consensus 308 l~~~~~~g~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 380 (569)
+|.+++||+++++++.+++.+. ++++++.||+||++.++...... .....++|.|.+++ ++
T Consensus 348 lr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v 415 (624)
T PRK12582 348 LRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-----------TERVGLIGLPLPGV-EL 415 (624)
T ss_pred eeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-----------CCCCCCCCcCCCCc-EE
Confidence 9999999999999999998753 36899999999997665422110 12245789999998 89
Q ss_pred EEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEE-e---cCCcEEEeccCCCeEE-e
Q 044926 381 DVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVM-H---SDGYLEIKDRSKDVII-S 455 (569)
Q Consensus 381 ~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~-~---~dg~l~~~GR~~~~i~-~ 455 (569)
+|++. | +.|||+++|++++.||+++++.+...|..+|||+|||+|++ + ++|++++.||.+|+|+ .
T Consensus 416 ~i~~~--------G--~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~ 485 (624)
T PRK12582 416 KLAPV--------G--DKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLS 485 (624)
T ss_pred EEccC--------C--CceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecC
Confidence 88642 3 68999999999999999999999988977999999999998 4 4699999999999999 6
Q ss_pred CceeeeHHHHH--HHHHcCCCcceeEEEecCCCCCCceeEEEEEecC--------CCCC----CCCHHHHHHHHhccC--
Q 044926 456 GGENLSSVEVE--SVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKE--------GSKS----KPTEKEMIEYCRGRL-- 519 (569)
Q Consensus 456 ~G~~v~~~~iE--~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~--------~~~~----~~~~~~l~~~l~~~l-- 519 (569)
+|++|++.+|| .++.+||.|.+++|++.+++..| ++|++.. .... ....+++++++++++
T Consensus 486 ~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g----~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 561 (624)
T PRK12582 486 TGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIG----LLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSA 561 (624)
T ss_pred CCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEE----EEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHH
Confidence 89999999885 68889999999999999876544 3333211 1000 012345666655544
Q ss_pred -----CCCc-cccEEEEecccCC------CCCCcccHHHHHHHHHhcC
Q 044926 520 -----PHYM-VPKTVVFMDELPK------TSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 520 -----~~~~-~p~~~~~~~~iP~------t~~GKi~r~~l~~~~~~~~ 555 (569)
+.+. .|..+.+++++|+ |++||+.|+.+.+.|++.-
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i 609 (624)
T PRK12582 562 HNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALV 609 (624)
T ss_pred HHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHH
Confidence 4444 9999999988774 4678889999988887654
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=504.54 Aligned_cols=505 Identities=21% Similarity=0.290 Sum_probs=375.3
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNN---------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~---------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
|++.++|++++..+|+++|+++.+ +.+||+||.++++++|..|.+.| .+||+|+++++|+++++++++||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 578999999999999999998642 68999999999999999999999 68999999999999999999999
Q ss_pred hhccceEeeccC---CCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCC
Q 044926 85 PFAAAVLNTINT---RLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 85 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
+++|++++|+++ ..+.+++.++++.+++++++++++..+.+.+........ ....++.++....
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------ 146 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQ-SAPPVIEVDLLDL------------ 146 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccc-cccceEeeccccc------------
Confidence 999999999997 457899999999999999999987766554432211100 0122222211000
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccC-C-----CCCCCEEE
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW-S-----VPTQPVYL 235 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~-~-----~~~~d~~~ 235 (569)
..... .......++++++++|||||||.||+|.++|++++.++......+ . ...+++++
T Consensus 147 ------------~~~~~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (578)
T PRK05850 147 ------------DSPRG---SDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVV 211 (578)
T ss_pred ------------ccCCc---cccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEE
Confidence 00000 001123567999999999999999999999999987765544322 2 35678999
Q ss_pred EecCchhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHH-HHHHHcCCCC-CCCCCCcCCC
Q 044926 236 WTLPMFHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVV-LNMLSNYRDP-DKKPLKLAKP 308 (569)
Q Consensus 236 ~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~-l~~l~~~~~~-~~~~~~~~~l 308 (569)
+.+|++|..|+.. .+.+++.|+++++.++ .++..+++.+++++++.. .+|.+ +..+...... ......+.++
T Consensus 212 ~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~l 290 (578)
T PRK05850 212 SWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGV 290 (578)
T ss_pred EECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhh
Confidence 9999999999865 6777888998888764 278999999999999865 45554 4434332211 1112223489
Q ss_pred ceEEEeCCCCcHHHHHHHH-hc---C---Ceeeecccccccccceeecccccccc--cCcHHHH------------hhhh
Q 044926 309 VHLVTAGAPPPAAVLLRTE-SL---G---FKVSHGYGLTETGGIVVSCAWKRNWN--LLPAAEK------------AKLK 367 (569)
Q Consensus 309 ~~~~~~g~~l~~~~~~~~~-~~---~---~~i~~~YG~tE~~~~~~~~~~~~~~~--~~~~~~~------------~~~~ 367 (569)
|.+++||+++++.+.+++. .+ + ..+++.||+||++..+.......... ....... ....
T Consensus 291 r~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ 370 (578)
T PRK05850 291 LGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPL 370 (578)
T ss_pred eeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceE
Confidence 9999999999999998876 33 2 36899999999875444321110000 0000000 0001
Q ss_pred cccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccC-----------CCCeeeecceEE
Q 044926 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT-----------DDGWFYTGDVGV 436 (569)
Q Consensus 368 ~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~ 436 (569)
...|.|. +. +++|+|++++..++.| +.|||+++|++++.||+++++.+...|. .++||+|||+|+
T Consensus 371 ~~~g~p~-~~-~~~ivd~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~ 446 (578)
T PRK05850 371 VSYGSPR-SP-TVRIVDPDTCIECPAG--TVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGF 446 (578)
T ss_pred EeccCCC-CC-EEEEEcCCCCcCCCCC--CEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceee
Confidence 1233332 34 8999998788888887 8999999999999999999999887773 257999999999
Q ss_pred EecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCC----CHHHHH
Q 044926 437 MHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKP----TEKEMI 512 (569)
Q Consensus 437 ~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~l~ 512 (569)
++ ||++++.||.+|+|+++|++|+|.+||.+|.+++.+ +++|++++++ .++.++++|++.++..... ....++
T Consensus 447 ~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~ 523 (578)
T PRK05850 447 IS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVK 523 (578)
T ss_pred EE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHH
Confidence 98 999999999999999999999999999999999985 5778888776 6788999998876543111 124556
Q ss_pred HHHhccCCC--CccccEEEEec--ccCCCCCCcccHHHHHHHHHhcC
Q 044926 513 EYCRGRLPH--YMVPKTVVFMD--ELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 513 ~~l~~~l~~--~~~p~~~~~~~--~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+.+...+.. ...|..+++++ +||+|++||++|++|+++|.+..
T Consensus 524 ~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~~ 570 (578)
T PRK05850 524 REVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQDE 570 (578)
T ss_pred HHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcCC
Confidence 665554432 23566666664 89999999999999999998764
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-60 Score=502.90 Aligned_cols=504 Identities=21% Similarity=0.246 Sum_probs=391.1
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCC---eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNN---ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~---~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
-.|+.++|+..++.+|+..++...+ +.+||+||..++.++|.+|++.|+++||+|+++++|+++++++++||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 99 (579)
T PRK09192 20 FPTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGL 99 (579)
T ss_pred hhhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCC
Confidence 3589999999999988776654332 6799999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCC-------HHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCC
Q 044926 90 VLNTINTRLD-------ARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNIS 162 (569)
Q Consensus 90 ~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (569)
+++|+++..+ .+++.++++.++++++|+++...+.+.+..... ..+....
T Consensus 100 ~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~------~~~~~~~----------------- 156 (579)
T PRK09192 100 VPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN------PLLHVLS----------------- 156 (579)
T ss_pred eeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc------cccceee-----------------
Confidence 9999987543 588999999999999999987766555432111 1111111
Q ss_pred CCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc-cCCCCCCCEEEEecCch
Q 044926 163 DDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS-DWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~-~~~~~~~d~~~~~~pl~ 241 (569)
+.++....... .......++++++++|||||||.||+|.++|++++..+..... .+++..+|+++...|++
T Consensus 157 -------~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 228 (579)
T PRK09192 157 -------HAWFKALPEAD-VALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY 228 (579)
T ss_pred -------hhhhcccCCCc-cccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCC
Confidence 11111111000 0111245678999999999999999999999999988877776 78899999999999999
Q ss_pred hhhhhhHH-HHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCC-CCCCCcCCCceEEEeC
Q 044926 242 HSNGWCFP-WAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD-KKPLKLAKPVHLVTAG 315 (569)
Q Consensus 242 ~~~g~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~-~~~~~~~~l~~~~~~g 315 (569)
|.+++... +..+..|+++++.+. .++..+++.+.++++++++..|..+..+....... .....+.++|.+++||
T Consensus 229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG 308 (579)
T PRK09192 229 HDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGA 308 (579)
T ss_pred CcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecC
Confidence 99998764 445677777766642 36889999999999998877665555554332111 1223344899999999
Q ss_pred CCCcHHHHHHHHh-c---C---Ceeeecccccccccceeeccccccccc--CcHH-------------H--HhhhhcccC
Q 044926 316 APPPAAVLLRTES-L---G---FKVSHGYGLTETGGIVVSCAWKRNWNL--LPAA-------------E--KAKLKARQG 371 (569)
Q Consensus 316 ~~l~~~~~~~~~~-~---~---~~i~~~YG~tE~~~~~~~~~~~~~~~~--~~~~-------------~--~~~~~~~~g 371 (569)
+++++.+.+.+.+ + + ..+++.||+||+++.+........... .... . ......++|
T Consensus 309 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG 388 (579)
T PRK09192 309 DMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCG 388 (579)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecC
Confidence 9999999988874 3 2 348999999999766554322111000 0000 0 001124689
Q ss_pred cccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCC
Q 044926 372 VKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKD 451 (569)
Q Consensus 372 ~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~ 451 (569)
.+.++. +++|+|+ ++..++.+ +.|||+++|+.++.||+++ ..+...+..++||+|||+|++ ++|++++.||.+|
T Consensus 389 ~~~p~~-~v~i~d~-~~~~~~~g--~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd 462 (579)
T PRK09192 389 KALPGH-EIEIRNE-AGMPLPER--VVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKD 462 (579)
T ss_pred CcCCCc-EEEEECC-CCCCCCCC--CEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEecccc
Confidence 999998 9999996 57777776 8999999999999999999 556666666899999999999 8999999999999
Q ss_pred eEEeCceeeeHHHHHHHHHcCCCcc--eeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCC-CCccccEE
Q 044926 452 VIISGGENLSSVEVESVLYSNPAVN--EAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLP-HYMVPKTV 528 (569)
Q Consensus 452 ~i~~~G~~v~~~~iE~~l~~~~~i~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~~~ 528 (569)
+|+++|++|+|.+||++|.++|+|. ++++++.+++. +..++++++..++.. .+.+++++++++.+. .++.|..+
T Consensus 463 ~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~~~~~i 539 (579)
T PRK09192 463 LIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDE--ERRGQLIHALAALVRSEFGVEAAV 539 (579)
T ss_pred EEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCCh--HHHHHHHHHHHHHHHHHhCCCceE
Confidence 9999999999999999999999998 89999988875 457777777665433 567889999998874 67888888
Q ss_pred EEec--ccCCCCCCcccHHHHHHHHHhcCC
Q 044926 529 VFMD--ELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 529 ~~~~--~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
+++. +||+|.+||++|++|++++.+...
T Consensus 540 ~~~~~~~lP~t~~GKv~R~~l~~~~~~~~~ 569 (579)
T PRK09192 540 ELVPPHSLPRTSSGKLSRAKAKKRYLSGAF 569 (579)
T ss_pred EEeCCCCcCCCCCcchhHHHHHHHHHcCCC
Confidence 8875 899999999999999999888664
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=487.39 Aligned_cols=436 Identities=28% Similarity=0.453 Sum_probs=367.0
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccc
Q 044926 41 TWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120 (569)
Q Consensus 41 Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (569)
||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.+++++++++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCC
Q 044926 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSG 200 (569)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 200 (569)
..... +.. ..+..+................+++++++||||
T Consensus 81 ~~~~~----------------~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 121 (436)
T TIGR01923 81 LEEKD----------------FQA-----------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSG 121 (436)
T ss_pred ccccc----------------eee-----------------------cchHhhhhcccccccccccCCcCceEEEEeCCC
Confidence 32100 000 000000000000001112245678999999999
Q ss_pred CCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcc
Q 044926 201 TTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVT 280 (569)
Q Consensus 201 tTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t 280 (569)
|||.||+|.++|+++...+......+++.++|++++..|++|.+++...+.++..|+++++.+.++ .+++.++++++|
T Consensus 122 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t 199 (436)
T TIGR01923 122 TTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QLLEMIANERVT 199 (436)
T ss_pred CCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HHHHHHHHhCCe
Confidence 999999999999999998888888889999999999999999999988888899999988886553 899999999999
Q ss_pred eeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCeeeecccccccccceeecccccccccCcH
Q 044926 281 HMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360 (569)
Q Consensus 281 ~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~ 360 (569)
++.++|+++..+++..... . ++|.++++|+++++.+.+.+.+.++++++.||+||++..+.......
T Consensus 200 ~~~~~P~~l~~l~~~~~~~----~--~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~------- 266 (436)
T TIGR01923 200 HISLVPTQLNRLLDEGGHN----E--NLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEM------- 266 (436)
T ss_pred EEEeHHHHHHHHHhCcCCC----C--ceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccc-------
Confidence 9999999999999865322 3 89999999999999999988878999999999999987655432111
Q ss_pred HHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecC
Q 044926 361 AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD 440 (569)
Q Consensus 361 ~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d 440 (569)
......+|.+.+++ ++++.+...+ +.|||+++|+.++.||++++..+...+. ++||+|||++++++|
T Consensus 267 ---~~~~~~~G~~~~~~-~~~i~~~~~~--------~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~d 333 (436)
T TIGR01923 267 ---LHARPDVGRPLAGR-EIKIKVDNKE--------GHGEIMVKGANLMKGYLYQGELTPAFEQ-QGWFNTGDIGELDGE 333 (436)
T ss_pred ---cccccCCCccCCCc-EEEEEeCCCC--------CceEEEEECCccchhhCCChhhhhhhhc-CCCeeccceEEEcCC
Confidence 11122478888887 8888432222 5699999999999999998777665554 799999999999999
Q ss_pred CcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCC
Q 044926 441 GYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLP 520 (569)
Q Consensus 441 g~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~ 520 (569)
|.+++.||.+|+||++|+++++.+||++|.+++.|.+++|++.++...+..+.++++..++ .+.+++.++++++++
T Consensus 334 g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----~~~~~l~~~l~~~l~ 409 (436)
T TIGR01923 334 GFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD----ISQAKLIAYLTEKLA 409 (436)
T ss_pred CCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC----CCHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999887777778888887653 567899999999999
Q ss_pred CCccccEEEEecccCCCCCCcccHHHH
Q 044926 521 HYMVPKTVVFMDELPKTSTGKIQKFVL 547 (569)
Q Consensus 521 ~~~~p~~~~~~~~iP~t~~GKi~r~~l 547 (569)
.+++|..++++++||+|++||++|++|
T Consensus 410 ~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 410 KYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred CCCCCeEEEEecCCCCCCCCceecccC
Confidence 999999999999999999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=444.24 Aligned_cols=524 Identities=21% Similarity=0.255 Sum_probs=417.0
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCC-----------------------eeeeHHHHHHHHHHHHHHHHHcCCCCCCE-E
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNN-----------------------ITYTWSDTHHRCLQLASSLLSIGISRGHV-V 67 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~-----------------------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~-V 67 (569)
.-.|+.+++++.++.+.++.++-..+ ..+||.|+.+++.++|++|.+.|++++++ |
T Consensus 39 g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~ 118 (678)
T KOG1180|consen 39 GASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKI 118 (678)
T ss_pred CcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeE
Confidence 34689999999999999999985421 57999999999999999999999997776 9
Q ss_pred EEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCC
Q 044926 68 SVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDD 147 (569)
Q Consensus 68 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (569)
+|+++.+.+|+.+++||++-+..+|.+..++..+.+.|-|++++++++|++.++.+.+...++.... .+.++..+..
T Consensus 119 ~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~---vk~II~~d~i 195 (678)
T KOG1180|consen 119 AIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKT---VKHIIYFDPI 195 (678)
T ss_pred EEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCc---eeEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999988876666555443 5677777743
Q ss_pred CcccccccCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccC-
Q 044926 148 DDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW- 226 (569)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~- 226 (569)
+-.. ......+....+..+.+|++++..+.....+..+..++|+|.|+|||||||.||||+++|+|+++....+....
T Consensus 196 d~~~-~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~ 274 (678)
T KOG1180|consen 196 DYDA-AKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVP 274 (678)
T ss_pred CCcc-chhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCc
Confidence 3111 01111111224456789999999887775444455789999999999999999999999999999888877765
Q ss_pred CCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCCH--------HHHHHHHHHhCcceeechhHHHHHHHcCCCC
Q 044926 227 SVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDA--------SIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP 298 (569)
Q Consensus 227 ~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~ 298 (569)
.+++.|+++..+|+.|+..+.+-+.++.-|+.+-.-++.+. ...-..+..++||++.++|..|+++.+-...
T Consensus 275 ~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~ 354 (678)
T KOG1180|consen 275 ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLS 354 (678)
T ss_pred ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999998866543221 1122345678999999999999987553210
Q ss_pred C--------------------------C--------------CCCCcCCCceEEEeCCCCcHHHHHHHHh-cCCeeeecc
Q 044926 299 D--------------------------K--------------KPLKLAKPVHLVTAGAPPPAAVLLRTES-LGFKVSHGY 337 (569)
Q Consensus 299 ~--------------------------~--------------~~~~~~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~Y 337 (569)
+ . +.+-.+++|.+++||++++++..+.+.- +.+++.++|
T Consensus 355 kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGY 434 (678)
T KOG1180|consen 355 KVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGY 434 (678)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccc
Confidence 0 0 0111379999999999999999998884 577999999
Q ss_pred cccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcc
Q 044926 338 GLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI 417 (569)
Q Consensus 338 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~ 417 (569)
|.||+++..+.... .+ -....+|.|++.. +++++|-+++-..+.+..-.||||++|+++..||+++++
T Consensus 435 GLTEtca~~tv~e~---------~d--~~~g~vG~pl~c~-eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~e 502 (678)
T KOG1180|consen 435 GLTETCAAATVLEP---------ED--FSTGRVGAPLPCC-EIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEE 502 (678)
T ss_pred cccchhcccEecCh---------hh--cccccccCCccce-EEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChh
Confidence 99999776665321 11 1234788888888 999999887766665533479999999999999999999
Q ss_pred ccccccCC-CC--eeeecceEEEecCCcEEEeccCCCeEE-eCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeE
Q 044926 418 GTRKCMTD-DG--WFYTGDVGVMHSDGYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPC 493 (569)
Q Consensus 418 ~~~~~~~~-~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~ 493 (569)
.+...|.. +| ||+|||+|++++||.|.+..|.+|++| -+|+.|+++.+|.+++..|.|...+|.+.... ..++
T Consensus 503 kT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~---s~~V 579 (678)
T KOG1180|consen 503 KTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK---SKPV 579 (678)
T ss_pred hhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEeccccc---ceeE
Confidence 99999987 88 999999999999999999999999999 89999999999999999999999999887664 4578
Q ss_pred EEEEecCCCCC------CCCH-----------------HHHHHHH-hccCCCCccccEEEEecc-c-C----CCCCCccc
Q 044926 494 AFVSLKEGSKS------KPTE-----------------KEMIEYC-RGRLPHYMVPKTVVFMDE-L-P----KTSTGKIQ 543 (569)
Q Consensus 494 ~~v~~~~~~~~------~~~~-----------------~~l~~~l-~~~l~~~~~p~~~~~~~~-i-P----~t~~GKi~ 543 (569)
++|++..+.-. .... ++|.++- ..+|..+.+|..|++.++ + | .|..-|+.
T Consensus 580 aiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLK 659 (678)
T KOG1180|consen 580 AIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLK 659 (678)
T ss_pred EEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhh
Confidence 88887653210 0111 1222222 346888999999988754 1 3 34567899
Q ss_pred HHHHHHHHHhc
Q 044926 544 KFVLREIAENM 554 (569)
Q Consensus 544 r~~l~~~~~~~ 554 (569)
|+.++..|++-
T Consensus 660 Rk~I~~~~k~e 670 (678)
T KOG1180|consen 660 RKEILAAYKKE 670 (678)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-58 Score=482.87 Aligned_cols=495 Identities=20% Similarity=0.202 Sum_probs=378.0
Q ss_pred chHHHHHHHHHHcCCCCeEEeCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 15 TPLVFLERAATVYGDSPSIIYNN--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
++.+.|...|..+|+.+++...+ +.+||.||+++++++|.+|.+.|+++||+|+|+++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 47888889999999999997655 6899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHH-------HHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 93 TINTRLDARTV-------SLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 93 ~l~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
++++..+.+++ .++++.++++.+++++........... . ...
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~-----~~~------------------------- 131 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-K-----GIR------------------------- 131 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-c-----CCc-------------------------
Confidence 99998775543 556788899999998765433221110 0 000
Q ss_pred ccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCC-CEEEEecCchhhh
Q 044926 166 FFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQ-PVYLWTLPMFHSN 244 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~-d~~~~~~pl~~~~ 244 (569)
...++++...... ......++++++++|||||||.||+|.++|+++...+......+++..+ |++++.+|++|..
T Consensus 132 -~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 207 (545)
T PRK07768 132 -VLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDM 207 (545)
T ss_pred -eeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccch
Confidence 1222232221111 1123456899999999999999999999999999888877777888776 8999999999999
Q ss_pred hhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCC----CCCCCCCcCCCceEEEeC
Q 044926 245 GWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRD----PDKKPLKLAKPVHLVTAG 315 (569)
Q Consensus 245 g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~----~~~~~~~~~~l~~~~~~g 315 (569)
++.. ...++..|+++++.++ .++..+++.+++++++++.+.|..+..+.+... ....++ .++|.++++|
T Consensus 208 g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~lr~~~~~g 285 (545)
T PRK07768 208 GMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDL--SSLRFALNGA 285 (545)
T ss_pred HHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCc--hheeeEEecc
Confidence 9875 4456788888887754 367889999999999999888877766654321 112334 4999999999
Q ss_pred CCCcHHHHHHHHh----cCC---eeeecccccccccceeeccccccccc-C-cHHH-------------HhhhhcccCcc
Q 044926 316 APPPAAVLLRTES----LGF---KVSHGYGLTETGGIVVSCAWKRNWNL-L-PAAE-------------KAKLKARQGVK 373 (569)
Q Consensus 316 ~~l~~~~~~~~~~----~~~---~i~~~YG~tE~~~~~~~~~~~~~~~~-~-~~~~-------------~~~~~~~~g~~ 373 (569)
+++++...+++.+ ++. .+++.||+||++..+........... . .... ......++|.|
T Consensus 286 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 365 (545)
T PRK07768 286 EPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPP 365 (545)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCC
Confidence 9999999988864 444 49999999999876544322111100 0 0000 01123578999
Q ss_pred cccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeE
Q 044926 374 TTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVI 453 (569)
Q Consensus 374 ~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i 453 (569)
.++. .++|+|+ ++..++.+ +.|||+++|+.++.||++.+..... +..++||+|||+|++++||.++++||.+|+|
T Consensus 366 ~~g~-~~~i~~~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i 440 (545)
T PRK07768 366 LPGL-EVRVVDE-DGQVLPPR--GVGVIELRGESVTPGYLTMDGFIPA-QDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440 (545)
T ss_pred CCCC-EEEEECC-CCCCCCCC--CEEEEEEccCcccccccCCCCCccc-ccCCCeeeccceEEEecCCEEEEEccccceE
Confidence 9998 9999995 67778777 8999999999999999986544333 3347899999999999999999999999999
Q ss_pred EeCceeeeHHHHHHHHHcCCCcceeEEEecC--CCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCC--ccccEEE
Q 044926 454 ISGGENLSSVEVESVLYSNPAVNEAAVVARP--DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHY--MVPKTVV 529 (569)
Q Consensus 454 ~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~ 529 (569)
+.+|++|++.+||..|.++|+|.+++|++.. +...++..+++++...... +....++.+.+++.+..+ ..|..+.
T Consensus 441 ~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~~~l~~~~~~~p~~v~ 519 (545)
T PRK07768 441 IMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFED-PAEVRRIRHQVAHEVVAEVGVRPRNVV 519 (545)
T ss_pred EECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEeccccc-HHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 9999999999999999999999998777654 3333445555554433221 123345777777766443 5788888
Q ss_pred Eec--ccCCCCCCcccHHHHHHHHH
Q 044926 530 FMD--ELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 530 ~~~--~iP~t~~GKi~r~~l~~~~~ 552 (569)
+++ +||+|++||++|++|+++|.
T Consensus 520 ~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 520 VLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred EeCCCcCCCCCchhHHHHHHHHhcC
Confidence 886 89999999999999999874
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=463.56 Aligned_cols=407 Identities=22% Similarity=0.257 Sum_probs=352.4
Q ss_pred eEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcC
Q 044926 32 SIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQ 111 (569)
Q Consensus 32 al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 111 (569)
++++.++.+||.||.++++++|..|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..++++++
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 46788899999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCC
Q 044926 112 SKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWD 191 (569)
Q Consensus 112 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (569)
++.+++++.... .... ....+++
T Consensus 80 ~~~~i~~~~~~~--------------------~~~~-------------------------------------~~~~~~~ 102 (414)
T PRK08308 80 CHGLLYGESDFT--------------------KLEA-------------------------------------VNYLAEE 102 (414)
T ss_pred CCEEEecCcccc--------------------cccC-------------------------------------CCCCCCC
Confidence 999999753100 0000 0134568
Q ss_pred ceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHHHHHhCceEEEeccCCHHHH
Q 044926 192 PIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIRKFDASII 270 (569)
Q Consensus 192 ~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~ 270 (569)
+++++|||||||.||+|.++|+++..........+.+..+|+++...|++|.+|+.. .+.++..|+++++.+.+++..+
T Consensus 103 ~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~ 182 (414)
T PRK08308 103 PSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFA 182 (414)
T ss_pred ceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHH
Confidence 999999999999999999999999988888777888889999999999999999854 6777889999999888999999
Q ss_pred HHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCeeeecccccccccceeecc
Q 044926 271 FDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCA 350 (569)
Q Consensus 271 ~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 350 (569)
++.++++++|++.++|.++..+.+..... . +++.++.+|+.+++.+.+++++.+.++++.||+||++.+.....
T Consensus 183 ~~~l~~~~~t~~~~~P~~~~~l~~~~~~~----~--~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 256 (414)
T PRK08308 183 LNILRNTPQHILYAVPLMLHILGRLLPGT----F--QFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICPD 256 (414)
T ss_pred HHHHHHhCCeEEEcCHHHHHHHHhcCCcc----c--cccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecCC
Confidence 99999999999999999999998764321 2 67889999999999999999876789999999999975433211
Q ss_pred cccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeee
Q 044926 351 WKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFY 430 (569)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 430 (569)
......+|.|.+++ ++++.+.+ + +.||+++++. ++||+
T Consensus 257 -------------~~~~~~~G~p~~~~-~~~~~~~~-------~--~~gel~v~~~-------------------~~~~~ 294 (414)
T PRK08308 257 -------------MKSHLDLGNPLPHV-SVSAGSDE-------N--APEEIVVKMG-------------------DKEIF 294 (414)
T ss_pred -------------CCCCCccCccCCCe-EEEEecCC-------C--CCceEEEEcC-------------------CceEE
Confidence 01234689999988 88886531 2 5799999751 67999
Q ss_pred ecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHH
Q 044926 431 TGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKE 510 (569)
Q Consensus 431 TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 510 (569)
|||+|++++||++++.||.+|+||.+|++|+|.+||+++.++++|.+++|++.+++..++.++++++..+. .+.++
T Consensus 295 TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~----~~~~~ 370 (414)
T PRK08308 295 TKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEE----IDPVQ 370 (414)
T ss_pred CCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC----CCHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888888876542 57789
Q ss_pred HHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHH
Q 044926 511 MIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548 (569)
Q Consensus 511 l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~ 548 (569)
++++++++++.+++|..++++++||+|++||++|+.|+
T Consensus 371 l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 371 LREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 99999999999999999999999999999999999543
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=428.56 Aligned_cols=521 Identities=22% Similarity=0.224 Sum_probs=413.7
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNN--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
....|+.++|.++|+++|+++|+++.+ +++||+|+++.++++|+.|..+|++.||.||++|+|.++++.+.+|++++|
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlG 153 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLG 153 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhC
Confidence 467899999999999999999999987 699999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccc
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (569)
++...||+++..+.|.|.++.++++++|++.+..+.+.+..+..... .-.++..+.....+ ...
T Consensus 154 v~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~--~i~~~~~~~~~~~~--------------g~~ 217 (649)
T KOG1179|consen 154 VITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKN--GIHVFSLGPTSVPD--------------GIE 217 (649)
T ss_pred ceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhc--cceEEecCCCCCCc--------------hHH
Confidence 99999999999999999999999999999999888777764433321 12233332221110 123
Q ss_pred hhhHhhhcCCCCc---ccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhh
Q 044926 169 TYESLVAKGDPEF---EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 169 ~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g 245 (569)
++...++....++ ......+-.++++.+|||||||.||+.+++|...+..+..+...++++..|+++..+|+||+.+
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa 297 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAA 297 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHH
Confidence 3444443333332 2223355679999999999999999999999998888777888899999999999999999988
Q ss_pred hhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHH
Q 044926 246 WCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLL 324 (569)
Q Consensus 246 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~ 324 (569)
... .-.++..|+++++-.+|+...+|+...+|++|++.-.-.+.+.|++.+..+.+... ++| +.-|..+.++.++
T Consensus 298 ~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~H--kVR--la~GNGLR~diW~ 373 (649)
T KOG1179|consen 298 GILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQH--KVR--LAYGNGLRPDIWQ 373 (649)
T ss_pred HHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCc--eEE--EEecCCCCchHHH
Confidence 877 45567788888888999999999999999999999999999999998766554433 444 4557788899999
Q ss_pred HHH-hcCCe-eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCC--------C
Q 044926 325 RTE-SLGFK-VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKR--------D 394 (569)
Q Consensus 325 ~~~-~~~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~--------~ 394 (569)
.+. ++|+. |.+.||+||...........-+..... +...+.+.+. ++--+|+++|++... .
T Consensus 374 ~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~--------~~~~~~l~p~-~LIk~D~~t~E~iRd~~G~Ci~~~ 444 (649)
T KOG1179|consen 374 QFVKRFGIIKIGEFYGATEGNSNLVNYDGRVGACGFM--------SRLLKLLYPF-RLIKVDPETGEPIRDSQGLCIPCP 444 (649)
T ss_pred HHHHHcCCCeEEEEeccccCcceeeeecCccccccch--------hhhhhhccce-EEEEecCCCCceeecCCceEEECC
Confidence 987 78765 999999999765444332221111111 0112223333 444456666655432 2
Q ss_pred CCceeEEEE--ecCcc---cccccCCcccccccc------CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHH
Q 044926 395 GSTLGEIVL--RGGCI---MLGYLKDPIGTRKCM------TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSV 463 (569)
Q Consensus 395 ~~~~Gel~v--~~~~~---~~gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~ 463 (569)
.+|.|.++- ....- +.||.+....++... .+|-||+|||+-.+|+.|++|+..|.+|.+...|++|+..
T Consensus 445 ~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTt 524 (649)
T KOG1179|consen 445 PGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTT 524 (649)
T ss_pred CCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHH
Confidence 358886652 22333 889999776665553 2466999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcceeEEEecCCCCCCce-eEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcc
Q 044926 464 EVESVLYSNPAVNEAAVVARPDEFWGET-PCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542 (569)
Q Consensus 464 ~iE~~l~~~~~i~~~~v~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi 542 (569)
|||++|.....+.|+.|.|+.-+....+ =.|.|+..+... .+.+.+..++++.||.|.+|..+.+.++|++|.+-|.
T Consensus 525 EVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~--~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl 602 (649)
T KOG1179|consen 525 EVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTE--KDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKL 602 (649)
T ss_pred HHHHHHhhhccccceeEEEEecCCccCccceEEEEecCccc--chHHHHHHHHHhhCccccchHHHHHHhhhhcccchhh
Confidence 9999999999999999999977654322 245555666655 8999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCcCc
Q 044926 543 QKFVLREIAENMGSSSSPLS 562 (569)
Q Consensus 543 ~r~~l~~~~~~~~~~~~~~~ 562 (569)
.+.+|+++-.+....++|++
T Consensus 603 ~K~~L~~egf~p~~~~dply 622 (649)
T KOG1179|consen 603 QKTELQKEGFNPAIISDPLY 622 (649)
T ss_pred HHHHHHHccCCccccCCceE
Confidence 99999999888888888764
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=453.90 Aligned_cols=399 Identities=28% Similarity=0.415 Sum_probs=317.6
Q ss_pred HHHHHHHcCCCCeEEe-CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCC
Q 044926 20 LERAATVYGDSPSIIY-NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRL 98 (569)
Q Consensus 20 l~~~a~~~p~~~al~~-~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 98 (569)
|+++|+++||++|+++ .++.+||+||+++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|++|++
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 6899999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEEE----ccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhh
Q 044926 99 DARTVSLLLQHCQSKLVFV----DFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174 (569)
Q Consensus 99 ~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
+.+++.+++++++++++|+ +......+......... ...++.++...... ...+...
T Consensus 81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---------------~~~~~~~- 141 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDP---SSSIIILDRDDLPK---------------KEALKSA- 141 (417)
T ss_dssp SHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTT---TEEEEEESHSSCTT---------------CHHHHHH-
T ss_pred ccccccccccccceeEEEEeccccccccccchhhhccccc---cccccccccccccc---------------ccccccc-
Confidence 9999999999999999997 22222222232222111 23344444332111 0000000
Q ss_pred hcCCCCcccCCC-CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhh--ccCCCCCCCEEEEecCchhhhhh-hHHH
Q 044926 175 AKGDPEFEWIRP-RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL--SDWSVPTQPVYLWTLPMFHSNGW-CFPW 250 (569)
Q Consensus 175 ~~~~~~~~~~~~-~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~--~~~~~~~~d~~~~~~pl~~~~g~-~~~~ 250 (569)
....... .+ ..++++++++|||||||.||+|.++|++++..+..+. ..++++ |++++..|++|.+|+ ...+
T Consensus 142 ~~~~~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~ 216 (417)
T PF00501_consen 142 SLSDEPQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALL 216 (417)
T ss_dssp HHCHCSH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHH
T ss_pred ccccccc---cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccc
Confidence 0000000 00 0457999999999999999999999999988877754 223333 699999999999999 6788
Q ss_pred HHHHhCceEEEeccCC---HHHHHHHHHHhCcceeechhHHHHHHHcCCCCC----CCCCCcCCCceEEEeCCCCcHHHH
Q 044926 251 AMAAVGGTNICIRKFD---ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD----KKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 251 ~~~~~g~~~~~~~~~~---~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~----~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
.++..|+++++++... ++.+++.++++++|++.++|+++..+++..... ...++ ++|.++++|+++++++.
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~--~lr~v~~~G~~l~~~~~ 294 (417)
T PF00501_consen 217 AALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLS--SLRTVISGGEPLPPDLL 294 (417)
T ss_dssp HHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGT--T-SEEEEESST-CHHHH
T ss_pred ccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccc--cccccccccccCChhhc
Confidence 8999999999988644 477899999999999999999999999832221 23444 89999999999999999
Q ss_pred HHHHh-cCC-eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 324 LRTES-LGF-KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 324 ~~~~~-~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
+++++ ++. +|++.||+||++++++.... ........++|.|.+++ +++|+|++++.+++.| +.|||
T Consensus 295 ~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~---------~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~g--~~Gei 362 (417)
T PF00501_consen 295 RRLRKAFGNAPIINLYGSTETGSIATIRPP---------EDDIEKPGSVGKPLPGV-EVKIVDPNTGEPLPPG--EPGEI 362 (417)
T ss_dssp HHHHHHHTTSEEEEEEEEGGGSSEEEEEET---------TTHHSSTTSEBEESTTE-EEEEECTTTSSBESTT--SEEEE
T ss_pred cccccccccccceecccccccceeeecccc---------ccccccccccccccccc-cccccccccccccccc--ccccc
Confidence 99984 565 89999999999988875420 11122345689999988 9999999889999888 88999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeC
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISG 456 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~ 456 (569)
+++||+++.||+++++.+...|.++|||+|||+|++++||+++++||.+|+||++
T Consensus 363 ~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 363 VIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred cccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 9999999999999999999989866899999999999999999999999999964
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=417.30 Aligned_cols=394 Identities=22% Similarity=0.230 Sum_probs=326.5
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEcc
Q 044926 41 TWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119 (569)
Q Consensus 41 Ty~el~~~v~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 119 (569)
||+||.+.++++|..|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecC
Q 044926 120 HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTS 199 (569)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 199 (569)
+....+... ............ ..................+++++++|||
T Consensus 81 ~~~~~~~~~---------~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~i~~TS 129 (408)
T TIGR01733 81 ALASRLAGL---------VLPIILVDPLEL----------------------AALDDAPAPPPPDAPSGPDDLAYVIYTS 129 (408)
T ss_pred chhhhcccc---------CCceEEechhhh----------------------hhcccccccccccCCCCCCCcEEEEEcC
Confidence 765433221 112222111100 0000000000000113467999999999
Q ss_pred CCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCC---HHHHHHHHHH
Q 044926 200 GTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFD---ASIIFDLIRR 276 (569)
Q Consensus 200 GtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~ 276 (569)
||||.||+|.++|+++...+......+.+..+|++++..|++|.+++...+.++..|+++++.++.. +..+.+.+++
T Consensus 130 GTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (408)
T TIGR01733 130 GSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAE 209 (408)
T ss_pred CCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHH
Confidence 9999999999999999999988888888999999999999999999988899999999999887643 6889999999
Q ss_pred hCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcC-Ceeeecccccccccceeecccccc
Q 044926 277 HGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLG-FKVSHGYGLTETGGIVVSCAWKRN 354 (569)
Q Consensus 277 ~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~~~~ 354 (569)
+++|.+.++|.+++.+.+... ..+. ++|.+++||+++++.+.+.+. .++ +.+++.||+||+++++........
T Consensus 210 ~~~t~l~~~p~~~~~l~~~~~---~~~~--~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~ 284 (408)
T TIGR01733 210 HPVTVLNLTPSLLALLAAALP---PALA--SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDAD 284 (408)
T ss_pred cCceEEEeCHHHHHHHHHhhh---hccc--CceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCcc
Confidence 999999999999999998754 3344 999999999999999999988 565 899999999999877753322211
Q ss_pred cccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCC------C-
Q 044926 355 WNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDD------G- 427 (569)
Q Consensus 355 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------~- 427 (569)
.... . ...++|.+.++. +++|+|++ +..++.| +.|||+++|++++.||+++++.+...|..+ +
T Consensus 285 ~~~~-----~-~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 354 (408)
T TIGR01733 285 DAPR-----E-SPVPIGRPLANT-RLYVLDDD-LRPVPVG--VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGA 354 (408)
T ss_pred ccCC-----c-cccccCcccCCc-eEEEECCC-CCCCCCC--CceEEEecCccccccccCChhhhhcceeeCCCCCCCCc
Confidence 1100 0 156789999998 99999986 7778777 899999999999999999998888777432 2
Q ss_pred -eeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEE
Q 044926 428 -WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480 (569)
Q Consensus 428 -~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 480 (569)
||+|||+|+++++|++++.||.+|+++.+|++++|.+||+++.+++.|.+++|
T Consensus 355 ~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 355 RLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred eEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 99999999999999999999999999999999999999999999999998764
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=381.88 Aligned_cols=321 Identities=27% Similarity=0.380 Sum_probs=274.7
Q ss_pred CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEe---c
Q 044926 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICI---R 263 (569)
Q Consensus 187 ~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~---~ 263 (569)
..++|+++++|||||||.||+|.++|+++..........+ ...++++..+|++|..++...+..++.|++.+++ .
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 3467999999999999999999999999988776655443 3557889999999999998888888889988873 3
Q ss_pred cCCHHHHHHHHHHhC--cceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCeeeecccccc
Q 044926 264 KFDASIIFDLIRRHG--VTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTE 341 (569)
Q Consensus 264 ~~~~~~~~~~l~~~~--~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE 341 (569)
.+++..+++.+++++ .++...+|..+..++..... ...+. +++.+++||+++++.+.+++.+.++++++.||+||
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~--~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE 186 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALA--ELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSE 186 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcc--cceEEEECCCCCCHHHHHHHHhcCCcEEecccCCc
Confidence 478999999999998 55666788888777664332 22344 89999999999999999998888999999999999
Q ss_pred cccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccc
Q 044926 342 TGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 421 (569)
+++.+. ..|.|.++. ++++.| |||+++|+.++.||++++...
T Consensus 187 ~~~~~~---------------------~~G~~~~g~-~v~i~~--------------Gei~v~g~~~~~gY~~~~~~~-- 228 (358)
T PRK07824 187 TSGGCV---------------------YDGVPLDGV-RVRVED--------------GRIALGGPTLAKGYRNPVDPD-- 228 (358)
T ss_pred cCCCcC---------------------cCceeCCCC-EEEecC--------------CEEEEecCccccccCCCcccc--
Confidence 865432 236677776 777722 999999999999999988643
Q ss_pred ccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCC
Q 044926 422 CMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEG 501 (569)
Q Consensus 422 ~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~ 501 (569)
.+..++||+|||+|++ ++|.+++.||.+|+|+.+|++|+|.+||.+|.++|+|.+++|++.+++..|+.++++++..++
T Consensus 229 ~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~ 307 (358)
T PRK07824 229 PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGG 307 (358)
T ss_pred cccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCC
Confidence 3445789999999999 799999999999999999999999999999999999999999999998888888998877665
Q ss_pred CCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 502 SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 502 ~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
.. ...++++++++++++.+++|..++++++||+|++||++|++|+++|.+
T Consensus 308 ~~--~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 308 PA--PTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred CC--cCHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 44 688999999999999999999999999999999999999999998864
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=406.48 Aligned_cols=489 Identities=17% Similarity=0.099 Sum_probs=356.3
Q ss_pred CCCCCCCCCCchHHHHHHHHHHcCCCCeEEeC---C--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH
Q 044926 5 KPSPANSTPLTPLVFLERAATVYGDSPSIIYN---N--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79 (569)
Q Consensus 5 ~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~---~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~ 79 (569)
++......-.|+.++|.+.++++|+++|+... + +.+||+|+.++++++|.+|.+.|+++||+|+|+++|+++|++
T Consensus 418 ~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvi 497 (1452)
T PTZ00297 418 REYNPLAGVRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVI 497 (1452)
T ss_pred hcCCCcccCCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence 34444444468999999999999999999742 3 689999999999999999999999999999999999999999
Q ss_pred HHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 80 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
+.+||+.+|++.||+++ ..+++.+++++++++++|++.+....+.+... . .++.+++++...... ... .
T Consensus 498 a~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~--~Lr~IIv~d~~~~~~--~~~--~ 566 (1452)
T PTZ00297 498 LEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---R--KLETVVYTHSFYDED--DHA--V 566 (1452)
T ss_pred HHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---c--CCcEEEEECCCcccc--ccc--c
Confidence 99999999999999975 46789999999999999999777665544322 1 367888875321100 000 0
Q ss_pred CCCCCcccchhhHhhhcCCCCc-ccCCCCCCCCceEEEe---cCCCCCCCceEEEchHHHHHHHhhhhccC---CCCCCC
Q 044926 160 NISDDQFFSTYESLVAKGDPEF-EWIRPRTEWDPIVLNY---TSGTTMSPKGVVHCHRGIFIVAVNTLSDW---SVPTQP 232 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~---TSGtTG~pk~v~~t~~~l~~~~~~~~~~~---~~~~~d 232 (569)
....+....+|+++++.+.... .......++|++.|+| ||||||.||||++||++++.++....... ....+|
T Consensus 567 ~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D 646 (1452)
T PTZ00297 567 ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKH 646 (1452)
T ss_pred cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCC
Confidence 0001112456888887654211 1112346788998885 99999999999999999998887765432 356789
Q ss_pred EEEEecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCC------------
Q 044926 233 VYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK------------ 300 (569)
Q Consensus 233 ~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~------------ 300 (569)
++++.+|++|+++....+.++..|+++.. +++..+++.|++++||++.++|.+++.+.+......
T Consensus 647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~ 723 (1452)
T PTZ00297 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFE 723 (1452)
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999997777777888888753 478999999999999999999999997765321100
Q ss_pred -------------CC-C--------------CcCCCceEEEeCC--CCcHHHHHHHHhcCCeeeecccccccccceeecc
Q 044926 301 -------------KP-L--------------KLAKPVHLVTAGA--PPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCA 350 (569)
Q Consensus 301 -------------~~-~--------------~~~~l~~~~~~g~--~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 350 (569)
.. . -..++|.+++||. +++.. ...++++..+||+||+. +...
T Consensus 724 ~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~-----l~~~i~i~~g~glTE~~---~~~~ 795 (1452)
T PTZ00297 724 RAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFS-----LLEHISVCYVPCLREVF---FLPS 795 (1452)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChH-----HhCCceEEEecceEEee---eecC
Confidence 00 0 0257889998873 44422 23468899999999942 1111
Q ss_pred cccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeee
Q 044926 351 WKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFY 430 (569)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 430 (569)
.... ...|.|.|++ +++|.+....... + ..|||++++ +++|+.|... . ++|+
T Consensus 796 -~~~~------------~~~G~Plpgv-EvKI~~~~E~~~~--~--~~GEIlvr~-------~kdpe~T~e~-~-~gW~- 847 (1452)
T PTZ00297 796 -EGVF------------CVDGTPAPSL-QVDLEPFDEPSDG--A--GIGQLVLAK-------KGEPRRTLPI-A-AQWK- 847 (1452)
T ss_pred -CCCc------------ccCCeecCce-EEEEcccccccCC--C--CCCeEEEEE-------CCChHHHHHh-h-CcCc-
Confidence 1110 1239999999 9999874221111 1 359999964 4778777653 2 5664
Q ss_pred ecceEEEecCCcEEEeccCCCeEE-eCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC-----
Q 044926 431 TGDVGVMHSDGYLEIKDRSKDVII-SGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS----- 504 (569)
Q Consensus 431 TGD~~~~~~dg~l~~~GR~~~~i~-~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----- 504 (569)
+||+|+|.||.+|+|| .+|+.|.|+.||..+...|.|.+++|++..++. ++++|++....-.
T Consensus 848 --------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~ 915 (1452)
T PTZ00297 848 --------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQ 915 (1452)
T ss_pred --------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHH
Confidence 6999999999999999 899999999999999999999999999987643 7788776531110
Q ss_pred ------------CCCHHH--------HHHHH---h--ccCCCCccccEEEEe-ccc-----CCCCCCcccHHHHHHHHHh
Q 044926 505 ------------KPTEKE--------MIEYC---R--GRLPHYMVPKTVVFM-DEL-----PKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 505 ------------~~~~~~--------l~~~l---~--~~l~~~~~p~~~~~~-~~i-----P~t~~GKi~r~~l~~~~~~ 553 (569)
....++ +.+.+ . +.+..+.+++.+.++ +++ -+|++.|+.|+.+.+.|++
T Consensus 916 ~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~ 995 (1452)
T PTZ00297 916 SHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSS 995 (1452)
T ss_pred HcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHH
Confidence 012222 22222 1 225567788877665 345 3899999999999988877
Q ss_pred cC
Q 044926 554 MG 555 (569)
Q Consensus 554 ~~ 555 (569)
.-
T Consensus 996 ~I 997 (1452)
T PTZ00297 996 VI 997 (1452)
T ss_pred HH
Confidence 54
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=339.12 Aligned_cols=411 Identities=20% Similarity=0.219 Sum_probs=338.5
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
..++...|.+++...|+.+|+.+.+..+||+++..+++++|..|.+.|+.+++.|+++++++.+++++++|++++|+.++
T Consensus 226 ~~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yv 305 (642)
T COG1020 226 RLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYV 305 (642)
T ss_pred cchHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEe
Confidence 36799999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|++|..+.+++..++++++++.+++.......... ... +.+.... ..
T Consensus 306 P~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~-------------------~~--- 352 (642)
T COG1020 306 PLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG----------LPG-LALDDAL-------------------SE--- 352 (642)
T ss_pred cCCCCChHHHHHHHHhhcCccEEEecccccccccc----------CCc-ccccccc-------------------cc---
Confidence 99999999999999999999999998332210000 010 1111000 00
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
... .........+++.++++|||||||.||||..+|+++.....+....+.++..|+++...++.+.......+..
T Consensus 353 ---~~~-~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~ 428 (642)
T COG1020 353 ---IPD-TDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGA 428 (642)
T ss_pred ---CCc-cCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHH
Confidence 000 0000112345789999999999999999999999999878888777999999999999998888888888999
Q ss_pred HHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHh-
Q 044926 253 AAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTES- 328 (569)
Q Consensus 253 ~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~- 328 (569)
++.|+.+++.+. .++..+...+.++++|.+..+|.++..++..............++.+++||+.++..+...+..
T Consensus 429 l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~ 508 (642)
T COG1020 429 LLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQL 508 (642)
T ss_pred HhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHh
Confidence 999999999864 6899999999999999999999999999876322222222225899999999999999998764
Q ss_pred c--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 329 L--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 329 ~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
. ...+.+.||.||+...+........ . .. ...+|.|.++. .+.|+| +.+..++.+ ..||+++.|.
T Consensus 509 ~~~~~~l~~~ygpTe~~~~~~~~~~~~~-------~-~~-~~piG~p~~n~-~~~ild-~~~~~~p~g--v~gel~i~g~ 575 (642)
T COG1020 509 AALARRLLNLYGPTEATLDAPSFPISAE-------L-ES-RVPIGRPVANT-QLYILD-QGLRPLPLG--VPGELYIAGL 575 (642)
T ss_pred ccccceEeeccCccHHhhheeeEEcccc-------c-CC-CCCcceeeCCC-eEEEEC-CCCCcCCCC--CCeeeEECCc
Confidence 3 4689999999996554443322111 0 00 46789999986 999999 588888888 7899999999
Q ss_pred cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCC
Q 044926 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNP 473 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~ 473 (569)
.+.+||++.++.+..+|..+.+|+|||++++.+||.+.++||.|+++|++|.+|.+.+||..+.++|
T Consensus 576 ~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 576 GLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred chhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 9999999999999999984458999999999999999999999999999999999999999998765
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=314.68 Aligned_cols=287 Identities=26% Similarity=0.262 Sum_probs=226.2
Q ss_pred CceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCC--CCEEEEecCchhhhhhhH-HHHHHHhCceEEEeccCCH
Q 044926 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT--QPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIRKFDA 267 (569)
Q Consensus 191 ~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~--~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~~~ 267 (569)
..++++|||||||.||+|.++|+++...+......+++.. .|++++.+|++|.+|+.+ .+.++..|+++++.+.+++
T Consensus 96 ~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~ 175 (386)
T TIGR02372 96 TARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPA 175 (386)
T ss_pred CceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCCh
Confidence 5789999999999999999999999888877777777643 468999999999999855 5566778999888888888
Q ss_pred HHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCC-eeeecccccccccce
Q 044926 268 SIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGF-KVSHGYGLTETGGIV 346 (569)
Q Consensus 268 ~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~-~i~~~YG~tE~~~~~ 346 (569)
..+++.++.+ |++.++|.++..+.+.. ..++ +++. ++||+++++++.+.+++.+. .+++.||+||+++++
T Consensus 176 ~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~--slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~ 246 (386)
T TIGR02372 176 SGIMRHARPG--DLIVGTPFIWEQLADLD----YRLP--GVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIG 246 (386)
T ss_pred HHHHHhhccC--CEEEECcHHHHHHHhhC----cCCC--ccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccc
Confidence 8888887653 89999999999998653 2233 6665 68899999999999987664 699999999998755
Q ss_pred eecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCC
Q 044926 347 VSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDD 426 (569)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 426 (569)
..... ...+.+.++. ++.+ + ++. + .|+ .
T Consensus 247 ~~~~~----------------~~~~~~~p~~-~~~~-~--~~~----------~---~g~-------------------~ 274 (386)
T TIGR02372 247 LREAP----------------DDPFRLLPDL-ACFA-D--TLS----------S---AGL-------------------A 274 (386)
T ss_pred cccCC----------------CCCcccCCCc-cccC-C--Ccc----------C---CCc-------------------c
Confidence 43210 1123344433 2221 1 110 0 011 2
Q ss_pred CeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCC
Q 044926 427 GWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKP 506 (569)
Q Consensus 427 ~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 506 (569)
.|++|||+|+++++|++++.||.||+|+++|++|+|.+||++|.++|+|.+++|.. .|+.+.++|++.++.....
T Consensus 275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~ 349 (386)
T TIGR02372 275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAE 349 (386)
T ss_pred ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHH
Confidence 36899999999999999999999999999999999999999999999999998863 2567888888876543111
Q ss_pred CHHHHHHHHhccCCCCccccEEEEecccCCCCCCccc
Q 044926 507 TEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQ 543 (569)
Q Consensus 507 ~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~ 543 (569)
..++++++++++++.+++|..+.++++||+|++||++
T Consensus 350 ~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 350 LEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 2568999999999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=310.59 Aligned_cols=327 Identities=17% Similarity=0.120 Sum_probs=238.1
Q ss_pred CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhh---hccCCCCCCCEEEEecCchhh-hhhhHHHHHHHhCceEEEec
Q 044926 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNT---LSDWSVPTQPVYLWTLPMFHS-NGWCFPWAMAAVGGTNICIR 263 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~---~~~~~~~~~d~~~~~~pl~~~-~g~~~~~~~~~~g~~~~~~~ 263 (569)
+.++++.+++||||||.||++.++|.++..+.... ...+++.++|++++..+..+. .++...+.....|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 44578899999999999999999999986654332 234578899999887665432 23333455667888888777
Q ss_pred cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeeccccccc
Q 044926 264 KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTET 342 (569)
Q Consensus 264 ~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~ 342 (569)
..+++.+++.|++++||++.++|+++..|++.......+....++|.++++|+++++.+.+.++ .+++++++.||+||+
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~ 232 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEV 232 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhh
Confidence 7788999999999999999999999999987654333333223899999999999999999987 579999999999998
Q ss_pred ccceeecccccccccCcHHHHhhhhcccCccccc-ceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccc
Q 044926 343 GGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTA-LTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421 (569)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 421 (569)
++....+.+.. ...|.+... ...++|+|++++.+++.| +.|||++++. +..
T Consensus 233 ~~~~~~~~~~~--------------~~~g~~~~~~~~~~eivd~~~g~~v~~G--e~Gelvvt~~------------~~~ 284 (422)
T TIGR02155 233 IGPGVAMECVE--------------TQDGLHIWEDHFYPEIIDPHTGEVLPDG--EEGELVFTTL------------TKE 284 (422)
T ss_pred cCCceeecccc--------------cCCCceEecCeeEEEEECCCCCCCCCCC--CeeEEEEecC------------Ccc
Confidence 53222211100 011222221 127789998889999887 8999999973 233
Q ss_pred ccCCCCeeeecceEEEecC-C-----cEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEE
Q 044926 422 CMTDDGWFYTGDVGVMHSD-G-----YLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAF 495 (569)
Q Consensus 422 ~~~~~~~~~TGD~~~~~~d-g-----~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~ 495 (569)
.++ .+||+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||.+|.++|+|...+++........+.+.+.
T Consensus 285 ~~p-~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~ 363 (422)
T TIGR02155 285 ALP-VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLK 363 (422)
T ss_pred ccc-eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEE
Confidence 344 679999999999876 4 468999999999999999999999999999999984444444444434567777
Q ss_pred EEecCCCCCC---C----CHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHH
Q 044926 496 VSLKEGSKSK---P----TEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKF 545 (569)
Q Consensus 496 v~~~~~~~~~---~----~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~ 545 (569)
|+..++.... . ..++|++.+++++..+.. ..++.+++||+|+ ||+.|.
T Consensus 364 v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 364 VELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 7766443210 1 146677888887765532 2333347999988 998763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=285.81 Aligned_cols=516 Identities=15% Similarity=0.157 Sum_probs=359.6
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCC------eeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNN------ITYTWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~------~~~Ty~el~~~v~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
.|+.++|++.+..+||.+|+...+ .++||++|..+|.+++..|.+. -+++||.|++++++++|++++++||++
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 789999999999999999998744 6899999999999999999976 679999999999999999999999999
Q ss_pred ccceEeeccCCC------CHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCC-CCCEEEEeCCCcccccccCCCC
Q 044926 87 AAAVLNTINTRL------DARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLK-PPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 87 ~G~~~v~l~~~~------~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
+|.+++|+.|-. ....+..+++.+++.+|+++......++........+.+ .+.+.+..+.....
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~-------- 921 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETI-------- 921 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhh--------
Confidence 999999998843 345688999999999999998876655543222111111 12222222211000
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecC
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p 239 (569)
........+..... +.....++.+|++-+.--++|.-.++.++|.++++.++.......+.+..-++...+
T Consensus 922 -------~k~~~~~~k~~~~~--~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~ 992 (1363)
T KOG3628|consen 922 -------RKRKKNIKKLNTPT--PPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSS 992 (1363)
T ss_pred -------hhhhhhhhccCCCC--CccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEec
Confidence 01111111111111 112255678999999989999999999999999999999999888888877777777
Q ss_pred chhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCC----cCCCce
Q 044926 240 MFHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLK----LAKPVH 310 (569)
Q Consensus 240 l~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~----~~~l~~ 310 (569)
.+...|+.. ++...+.|...+++++ .++..++..++++++.-++.+-..++.+.+....+..++. ..+...
T Consensus 993 ~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~ 1072 (1363)
T KOG3628|consen 993 PYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSI 1072 (1363)
T ss_pred CccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccce
Confidence 777777654 7788889999888875 5789999999999999999988888877765444333322 001234
Q ss_pred EEEeCCCCcHHHHHHHHhc----CC---eeeecccccccccceeeccccccccc--CcH-HHHhhhh-------------
Q 044926 311 LVTAGAPPPAAVLLRTESL----GF---KVSHGYGLTETGGIVVSCAWKRNWNL--LPA-AEKAKLK------------- 367 (569)
Q Consensus 311 ~~~~g~~l~~~~~~~~~~~----~~---~i~~~YG~tE~~~~~~~~~~~~~~~~--~~~-~~~~~~~------------- 367 (569)
++..-++....+...+.+. |. .+-..|+..=--.++.....+.+-.. +.. .......
T Consensus 1073 vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L 1152 (1363)
T KOG3628|consen 1073 VVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLL 1152 (1363)
T ss_pred eeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCcccc
Confidence 5555677777777766532 22 23334443322222221111000000 000 0000000
Q ss_pred cccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcc-cccccc---------CCCCeeeecceEEE
Q 044926 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPI-GTRKCM---------TDDGWFYTGDVGVM 437 (569)
Q Consensus 368 ~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~-~~~~~~---------~~~~~~~TGD~~~~ 437 (569)
-..|..++++ ++.|++|++-.++..| +.||||+.|.+-+.+|+...+ .....| ...+|-||||+|++
T Consensus 1153 ~dSG~~~~~~-~i~IvnPEtk~pc~dg--e~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl 1229 (1363)
T KOG3628|consen 1153 YDSGKLPVYT-DIAIVNPETKGPCRDG--ELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFL 1229 (1363)
T ss_pred ccCCcccccc-eeEEeCCccccccccC--CcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeee
Confidence 1126666666 9999999999999888 999999999998888875321 111111 12459999999997
Q ss_pred ecC----------CcEEEeccCCCeEEeCceeeeHHHHHHHHHc-CCCcceeEEEecCCCCCCceeEEEEEecCCCCCCC
Q 044926 438 HSD----------GYLEIKDRSKDVIISGGENLSSVEVESVLYS-NPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKP 506 (569)
Q Consensus 438 ~~d----------g~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~-~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 506 (569)
+.. ..||++|-.++.+..+|.+.+|.+||..+.+ ||.|.+|+|+.+. ..+|++++.... .
T Consensus 1230 ~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~-----glvVvviE~~gq----~ 1300 (1363)
T KOG3628|consen 1230 RRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQAT-----GLVVVVIECHGQ----Q 1300 (1363)
T ss_pred eeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeC-----CeEEEEEEecCc----h
Confidence 521 3589999999999999999999999998885 8999999999884 456666666552 2
Q ss_pred CHHHHHHHH-hccCCCCc-cccEEEEec--ccCCCCCCcccHHHHHHHHHhcCCCC
Q 044926 507 TEKEMIEYC-RGRLPHYM-VPKTVVFMD--ELPKTSTGKIQKFVLREIAENMGSSS 558 (569)
Q Consensus 507 ~~~~l~~~l-~~~l~~~~-~p~~~~~~~--~iP~t~~GKi~r~~l~~~~~~~~~~~ 558 (569)
...+|.-.+ ...|.+|. +-+.+.+++ .+|+++.|..+|..+++.+.......
T Consensus 1301 ~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~~ 1356 (1363)
T KOG3628|consen 1301 ELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLDP 1356 (1363)
T ss_pred hHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccce
Confidence 333333333 33344454 444566664 69999999999999999887766543
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=285.37 Aligned_cols=502 Identities=21% Similarity=0.217 Sum_probs=334.6
Q ss_pred chHHHHHHHHHHcCCCCeEEeCC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 15 TPLVFLERAATVYGDSPSIIYNN--------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~--------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
++...+.+.+...|...+..+.- ..+||++....++.+++.|...|...|+.|++++..+.++++..+|+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 56778888899998887765521 5799999999999999999999999999999999999999999999999
Q ss_pred ccceEeeccCCCC----HHHHHH---HHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 87 AAAVLNTINTRLD----ARTVSL---LLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 87 ~G~~~v~l~~~~~----~~~l~~---~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
+|..+++++|+++ ++.+.. .+...... +... .+........... -..+...
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~--i~~~--l~i~~~~~~~~~~---~~sv~~~--------------- 174 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELE--IVRR--LNIIDILLNSLFP---KLSVETI--------------- 174 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhheeccce--ehhh--hhhHHHHhhcccc---ccchhhc---------------
Confidence 9999999999999 332221 11111111 1110 0000000000000 0000000
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecC
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p 239 (569)
...|..+...... ......-++..+.+.||||+||.||+|..+|..+.....+....+..+..+++-....
T Consensus 175 -------~~~f~~~~~~~~~--r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~ 245 (1032)
T KOG1178|consen 175 -------ADSFQMVLHNEDT--REIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTS 245 (1032)
T ss_pred -------cchhhhhhccCCC--cceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhhe
Confidence 0111111111111 1112244567999999999999999999999999999999998888888887622233
Q ss_pred chhhhhhhHHHHHHHhCceEEEec-c---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCC-----------CC
Q 044926 240 MFHSNGWCFPWAMAAVGGTNICIR-K---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKP-----------LK 304 (569)
Q Consensus 240 l~~~~g~~~~~~~~~~g~~~~~~~-~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~-----------~~ 304 (569)
.+........+.+++..+..+..+ . .++..+.+.+++++++..+.+|++.+.++......... -.
T Consensus 246 ~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~ 325 (1032)
T KOG1178|consen 246 VYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTK 325 (1032)
T ss_pred eecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhccccccc
Confidence 334444444566666666655543 2 34789999999999999999999988777765442111 11
Q ss_pred cCCCceEEEeCCCCcHHHHHHHHhc---CCeeeecccccccccceeecccccccccCcHHHHh---hhhcccCcccccce
Q 044926 305 LAKPVHLVTAGAPPPAAVLLRTESL---GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKA---KLKARQGVKTTALT 378 (569)
Q Consensus 305 ~~~l~~~~~~g~~l~~~~~~~~~~~---~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~ 378 (569)
...++....+|++....+...+... ++... -|+.++..+.+....+.+.-..+....-. .....+|.+.
T Consensus 326 ~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~-~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~---- 400 (1032)
T KOG1178|consen 326 RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGL-PYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLT---- 400 (1032)
T ss_pred chhheeeeecCCccchhhhhhhhhcccceeeee-cccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCc----
Confidence 2378889999999999888855532 22222 27888876666543322210000000000 0000011000
Q ss_pred eeEEeCCCCCcccCCC--CCceeEEEEecCcccccccCCcccccccc--C---CCCeeeecceEEEecCCcEEEeccCCC
Q 044926 379 EVDVLDPKSGVSAKRD--GSTLGEIVLRGGCIMLGYLKDPIGTRKCM--T---DDGWFYTGDVGVMHSDGYLEIKDRSKD 451 (569)
Q Consensus 379 ~~~i~d~~~~~~~~~~--~~~~Gel~v~~~~~~~gy~~~~~~~~~~~--~---~~~~~~TGD~~~~~~dg~l~~~GR~~~ 451 (569)
...+... .+.+...+ .++.|+-...++.+..|| ..++....++ . .+.+|+|||.|+..++|.+.+.||.|+
T Consensus 401 ~~~~~~~-~~~~~~~~v~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~ 478 (1032)
T KOG1178|consen 401 VLESLYR-AGGEGEGGVGKGCLGAEQNLSSWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADR 478 (1032)
T ss_pred ceeeeec-cCcccCCcccceeecccccccceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccc
Confidence 1122221 22222222 112222223334444452 2222222221 1 134799999999888999999999999
Q ss_pred eEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEe
Q 044926 452 VIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFM 531 (569)
Q Consensus 452 ~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 531 (569)
+||.+|.++...+|+..+..+|.|.++.+....+...++.+++||+....... .....|+.++.++|+.|++|..++.+
T Consensus 479 qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~-~~~~~i~~~l~~~La~y~vPs~~V~l 557 (1032)
T KOG1178|consen 479 QIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKS-VLIRDIRNYLKKELASYMLPSLVVPL 557 (1032)
T ss_pred eEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCc-hhHHHHHHhhcccccceecceEEEEh
Confidence 99999999999999999999999999999999998888999999998876543 45788999999999999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHhcC
Q 044926 532 DELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 532 ~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+++|+|++||+|+++|.+...+..
T Consensus 558 ~~vPl~~~GKvDkkaL~~~~s~~~ 581 (1032)
T KOG1178|consen 558 AKVPLNPNGKVDKKALLEYNSKLT 581 (1032)
T ss_pred hhCCcCCCCCcChhhhhhhhhhhc
Confidence 999999999999999998665554
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=258.04 Aligned_cols=324 Identities=19% Similarity=0.129 Sum_probs=218.9
Q ss_pred CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCEEEEecCchhhhhhhH-HHHHHHhCceEEEec
Q 044926 188 TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIR 263 (569)
Q Consensus 188 ~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~ 263 (569)
+.++++.+.+||||||.||++.+||+++..+....... .++.++|+++...|..+..+... .+++...|++++...
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 45688899999999999999999999987766554433 48899999999888766555433 345566777654333
Q ss_pred cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeeccccccc
Q 044926 264 KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTET 342 (569)
Q Consensus 264 ~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~ 342 (569)
.....++.|++++++.+.++|+.+..+++.+.....+....++|.+++||+++++.+++.++ .+|+++++.||+||+
T Consensus 164 --~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~ 241 (445)
T TIGR03335 164 --KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEG 241 (445)
T ss_pred --chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhh
Confidence 23467899999999999999999888877544333222223899999999999999998887 579999999999998
Q ss_pred ccceeecccccccccCcHHHHhhhhcccCccccc-ceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccc
Q 044926 343 GGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTA-LTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421 (569)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 421 (569)
+ ++..|.... |...+. ...++|+|++++.+++.| +.|||++++-...- ++.
T Consensus 242 ~-~~~~c~~~~-----------------g~h~~~d~~~vEIvDp~~~~~vp~G--e~GELvvT~L~~~~--------~r~ 293 (445)
T TIGR03335 242 T-MCGECQAVA-----------------GLHVPEDLVHLDVYDPRHQRFLPDG--ECGRIVLTTLLKPG--------ERC 293 (445)
T ss_pred h-heEEecCCC-----------------CccccCCceEEEEEcCCCCCCCcCC--CceEEEEEecCCCC--------ccC
Confidence 5 333432211 222221 127999999888888887 89999999732100 000
Q ss_pred ccCCCCeeeecceEEEec-C----C----cEEEeccCCCeEEeCceeeeHHHHHHHHHcC---CCcc-eeEEEecCCCCC
Q 044926 422 CMTDDGWFYTGDVGVMHS-D----G----YLEIKDRSKDVIISGGENLSSVEVESVLYSN---PAVN-EAAVVARPDEFW 488 (569)
Q Consensus 422 ~~~~~~~~~TGD~~~~~~-d----g----~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~---~~i~-~~~v~~~~~~~~ 488 (569)
.++ --.|+|||++++.. + | ++...||.||+++++|.+++|.+||++|.++ +++. +..++.......
T Consensus 294 ~~P-liRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (445)
T TIGR03335 294 GSL-LINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEG 372 (445)
T ss_pred Cce-EEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCC
Confidence 111 23599999999732 3 2 2445699999999999999999999999994 5554 333443333222
Q ss_pred CceeEEEEEecCCCCCCCCHHHHHHHHhcc----CC-------CCccccEEEEe--cccCCCC-CCcccH
Q 044926 489 GETPCAFVSLKEGSKSKPTEKEMIEYCRGR----LP-------HYMVPKTVVFM--DELPKTS-TGKIQK 544 (569)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~----l~-------~~~~p~~~~~~--~~iP~t~-~GKi~r 544 (569)
...+.+.|+..+... ...+++.+.+.+. ++ ...+...+.++ ..|||++ .||..|
T Consensus 373 ~~~~~v~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 373 EITLRVSLECEDKDN--CSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred CceEEEEEEecCccc--chHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 234555566654432 2333444333333 21 22233344444 4799984 688765
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=237.58 Aligned_cols=324 Identities=21% Similarity=0.216 Sum_probs=241.0
Q ss_pred CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccC---CCCCCCEEEEecCc-hhhhhhhHHHHHHHhCceEEEe
Q 044926 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW---SVPTQPVYLWTLPM-FHSNGWCFPWAMAAVGGTNICI 262 (569)
Q Consensus 187 ~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~---~~~~~d~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 262 (569)
...++...|..||||||+|+-+.+|+..+..++..+++.+ +...+|++...... .+..|+..-.++--.|++++-.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 4455777799999999999999999999988887777765 67889988766552 2233344445555577777776
Q ss_pred ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccc
Q 044926 263 RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTE 341 (569)
Q Consensus 263 ~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE 341 (569)
..-+.+..+.+++.+++|++.++|+.+..|++.+...+....-.++|.+++|+|+++++.+..++ ++|+.+++.||+||
T Consensus 167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE 246 (438)
T COG1541 167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTE 246 (438)
T ss_pred CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeecccccc
Confidence 66788999999999999999999999999999987765333334899999999999999999998 78999999999999
Q ss_pred cccc-eeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccc
Q 044926 342 TGGI-VVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420 (569)
Q Consensus 342 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 420 (569)
..+. +..|....+.+.+.+. ..++|+||++|+.++.| +.|||+++. +++
T Consensus 247 ~~g~g~~eC~~~~glhi~eD~----------------~~~Ei~dP~t~e~l~dg--e~GelV~T~------------L~~ 296 (438)
T COG1541 247 GFGPGAGECTERNGLHIWEDH----------------FIFEIVDPETGEQLPDG--ERGELVITT------------LTK 296 (438)
T ss_pred ccCCcccccccccCCCcchhh----------------ceeeeecCCcCccCCCC--CeeEEEEEe------------ccc
Confidence 9766 3555544433333332 28999999999999988 899999997 222
Q ss_pred cccCCCCeeeecceEEEecC----Cc-----EEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcc-eeEEEecCCCCCCc
Q 044926 421 KCMTDDGWFYTGDVGVMHSD----GY-----LEIKDRSKDVIISGGENLSSVEVESVLYSNPAVN-EAAVVARPDEFWGE 490 (569)
Q Consensus 421 ~~~~~~~~~~TGD~~~~~~d----g~-----l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~-~~~v~~~~~~~~~~ 490 (569)
..++ --.|+|||++.+.++ |+ ..+.||.||++++.|.+|+|..||.+|.+.+++. +.+++... ....+
T Consensus 297 ~~~P-lIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d 374 (438)
T COG1541 297 EGMP-LIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLD 374 (438)
T ss_pred cCcc-eEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCc
Confidence 2222 336999999999864 32 4589999999999999999999999999999999 66666665 44456
Q ss_pred eeEEEEEecCCCCCCCCHHHHHHHHhccCC-CCcccc--EEEEecccCCCCCCccc
Q 044926 491 TPCAFVSLKEGSKSKPTEKEMIEYCRGRLP-HYMVPK--TVVFMDELPKTSTGKIQ 543 (569)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p~--~~~~~~~iP~t~~GKi~ 543 (569)
.+.+.|+..+++.......++...+...+- ...... .++.+.++||+. ||..
T Consensus 375 ~L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~-~K~k 429 (438)
T COG1541 375 ELTVRVELENEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTE-GKAK 429 (438)
T ss_pred eEEEEEEecCcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceeccc-Ccee
Confidence 678888887653211122222233333322 122333 344446899995 4643
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=204.09 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=163.5
Q ss_pred HHHHHHHcCCCCeEEeC------CeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 20 LERAATVYGDSPSIIYN------NITYTWSDTHHRCLQLASSLLS-IGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 20 l~~~a~~~p~~~al~~~------~~~~Ty~el~~~v~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
|...++.+|+++|+++. ++++||+||.++++++|.+|++ .|+++||+|+|+++|+++++++++||+++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 56788899999999752 2369999999999999999998 6999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|++ .+++++++++++..+... . ...++.+........ .. .....+ ...+.+
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~---~~-~~~~~~--~~~~~~ 132 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAA-----G-----SGEVVALSLDPLGRR---VA-GELPPG--VIDFAP 132 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhcc-----c-----CCceEEEeccccccC---CC-CCCCCc--ccchhh
Confidence 995 789999999987766532 1 133333322110000 00 000011 134555
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWA 251 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~ 251 (569)
.+........+.....++|++.++||||+ +|.+++... ...+++++|+++ ..|++|.+|+.. .+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~ 198 (227)
T TIGR03089 133 EVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLA 198 (227)
T ss_pred hhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHH
Confidence 45432222221112456899999999986 566665544 456789999999 999999999965 678
Q ss_pred HHHhCceEEEeccCCHHHHHHHHHHhCcc
Q 044926 252 MAAVGGTNICIRKFDASIIFDLIRRHGVT 280 (569)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~t 280 (569)
++..|+++++.++|++..+++.|+++++|
T Consensus 199 ~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 199 PLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred HhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 88899999999999999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=187.85 Aligned_cols=121 Identities=25% Similarity=0.318 Sum_probs=111.2
Q ss_pred CCeeeecceEEE-ecCCcEEEeccCCCeEEeCc---eeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCC
Q 044926 426 DGWFYTGDVGVM-HSDGYLEIKDRSKDVIISGG---ENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEG 501 (569)
Q Consensus 426 ~~~~~TGD~~~~-~~dg~l~~~GR~~~~i~~~G---~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~ 501 (569)
+|||+|||+|++ |+||++++.||.+ +| ++|+|. ||++|.+||+|.+|+|++++++.+|+.++++|+...
T Consensus 208 dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~- 280 (365)
T PRK09188 208 RIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL- 280 (365)
T ss_pred CcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC-
Confidence 899999999998 6999999999998 78 799999 999999999999999999999999999999998763
Q ss_pred CCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 502 SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 502 ~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
. .+.++++++++++|+. ++|..+.++++||+|++||++|++|++.+.+....
T Consensus 281 -~--~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~~~ 332 (365)
T PRK09188 281 -P--ADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQIDE 332 (365)
T ss_pred -C--CCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhccccc
Confidence 2 5778999999999999 99999999999999999999999999987555433
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=183.06 Aligned_cols=506 Identities=15% Similarity=0.093 Sum_probs=324.3
Q ss_pred chHHHHHHHHHHcCCCCeEEeCC-----eeeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhh
Q 044926 15 TPLVFLERAATVYGDSPSIIYNN-----ITYTWSDTHHRCLQLAS-SLLSIGISRGHVVSVVSPNV--PALYELHFAVPF 86 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~-----~~~Ty~el~~~v~~~A~-~L~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~ 86 (569)
.+...++..-.+++.+.|.++-+ ..+||..+..++.++|+ .|.+.|+.++|+|.+++..+ +++++..++|..
T Consensus 95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l 174 (1363)
T KOG3628|consen 95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL 174 (1363)
T ss_pred chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence 35566666667788888888744 58999999999999999 66677999999999998774 899999999999
Q ss_pred ccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcc
Q 044926 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQF 166 (569)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (569)
.|.+++|+.+..+.+++..+++....+++++.......+........ ..+.
T Consensus 175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s----~~k~------------------------- 225 (1363)
T KOG3628|consen 175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVS----LAKA------------------------- 225 (1363)
T ss_pred cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCccc----HHHH-------------------------
Confidence 99999999999999999999999999999998765443322110000 0000
Q ss_pred cchhhHhhhcCCCC-cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhh---------------h-----hcc
Q 044926 167 FSTYESLVAKGDPE-FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN---------------T-----LSD 225 (569)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~---------------~-----~~~ 225 (569)
+.+|....-.+.-. .....+.-.-...+|-||.+++|.--|++++|. ++.+.+. + ...
T Consensus 226 v~~w~t~~~k~~~~~~k~~~P~~~~~~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v 304 (1363)
T KOG3628|consen 226 VAWWKTNDFKGNYTKDKIKKPRMQLPYGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV 304 (1363)
T ss_pred HHhhhcccccceeehhhccCCceeeeeEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence 00000000000000 000011111127899999999999999999998 4322221 1 112
Q ss_pred CCCCCCCEEEEecCchhhhhhhH-HHHHHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCC---
Q 044926 226 WSVPTQPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP--- 298 (569)
Q Consensus 226 ~~~~~~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~--- 298 (569)
+++...+.++.........|+.+ .+.+++.|.+.+-+++ ..|..+.+++.+++.+++..--..+.........
T Consensus 305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~ 384 (1363)
T KOG3628|consen 305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPK 384 (1363)
T ss_pred cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcc
Confidence 34456667777776666777765 5677889999988887 6778899999999999998776655544332211
Q ss_pred ------CCCCCCcCCCceEEEeCCCCcHHHHHHHH-----hcCC---ee---------------eecccccccccceeec
Q 044926 299 ------DKKPLKLAKPVHLVTAGAPPPAAVLLRTE-----SLGF---KV---------------SHGYGLTETGGIVVSC 349 (569)
Q Consensus 299 ------~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-----~~~~---~i---------------~~~YG~tE~~~~~~~~ 349 (569)
+.....++++|.+++....++.+...... ..|. ++ ...=+++|.+......
T Consensus 385 a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~ 464 (1363)
T KOG3628|consen 385 ATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRR 464 (1363)
T ss_pred cccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccC
Confidence 12223456999999999999987765443 1221 11 1111233443332222
Q ss_pred cccc---------------ccc---cCcH-HHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccc
Q 044926 350 AWKR---------------NWN---LLPA-AEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIML 410 (569)
Q Consensus 350 ~~~~---------------~~~---~~~~-~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~ 410 (569)
+... ... .... .......-.+|...++...+.++++++...|..+ ++|||||.+++...
T Consensus 465 p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~--eVGEIwVsS~~~~~ 542 (1363)
T KOG3628|consen 465 PEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTD--EVGEIWVSSNSLGK 542 (1363)
T ss_pred cccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccC--cceeEEEecCCccc
Confidence 2100 000 0001 1111122244666666668899999999999998 99999999999999
Q ss_pred cccCCccccccccC------------CCCeeeecceEEEecCCcEEEeccCCCeEE-eCceeeeHHHHH----------H
Q 044926 411 GYLKDPIGTRKCMT------------DDGWFYTGDVGVMHSDGYLEIKDRSKDVII-SGGENLSSVEVE----------S 467 (569)
Q Consensus 411 gy~~~~~~~~~~~~------------~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~-~~G~~v~~~~iE----------~ 467 (569)
+|+.-+..+...|. +..+.|||-+|++++++ ++++|-.+|.+. ..|..++..+|- .
T Consensus 543 ~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gk-i~vl~~k~d~llq~~~~~h~~d~iv~thya~~~ikt 621 (1363)
T KOG3628|consen 543 LFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGK-IYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKT 621 (1363)
T ss_pred ceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCe-EEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHH
Confidence 99987766666552 12378999999998554 666655555555 888887766643 4
Q ss_pred HHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCC-Ccc-cc--EEEEecccCCCCCCccc
Q 044926 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH-YMV-PK--TVVFMDELPKTSTGKIQ 543 (569)
Q Consensus 468 ~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~-~~~-p~--~~~~~~~iP~t~~GKi~ 543 (569)
+.+..+.|.++.++- .++++++++-.+.... .+.-+....+-+.+.. |++ +- .++..+.||||+-|-|.
T Consensus 622 V~R~v~~VF~~saf~------~E~~~Vv~~esP~a~e-~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~ 694 (1363)
T KOG3628|consen 622 VMRGVIAVFDVSAFE------DEHIVVVVLESPDATE-ENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIH 694 (1363)
T ss_pred HHhccceEEEEeeee------cceEEEEEEeCcchhh-hhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccc
Confidence 444567788888775 2445555554444321 1111111112122222 222 21 23334789999988899
Q ss_pred HHHHHHHHHhcCCCCCc
Q 044926 544 KFVLREIAENMGSSSSP 560 (569)
Q Consensus 544 r~~l~~~~~~~~~~~~~ 560 (569)
-.++++.|.+.....+-
T Consensus 695 ~~~~k~~F~~G~L~~~~ 711 (1363)
T KOG3628|consen 695 NNECKQAFLEGSLPPSY 711 (1363)
T ss_pred cHHHHHHHHcCCCCcce
Confidence 99999999998876653
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=164.67 Aligned_cols=256 Identities=14% Similarity=0.080 Sum_probs=166.1
Q ss_pred CceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCEEEEec-CchhhhhhhHHHHHHHhCceEEEeccCC
Q 044926 191 DPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTL-PMFHSNGWCFPWAMAAVGGTNICIRKFD 266 (569)
Q Consensus 191 ~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~-pl~~~~g~~~~~~~~~~g~~~~~~~~~~ 266 (569)
....+..||||||.|-.+..+.+....+....... .++..++++.... .-.+.+.. +..........-+. .+
T Consensus 100 ~~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~---~~~~~~~~~~~~l~-~~ 175 (430)
T TIGR02304 100 GNISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQS---VNNRWISLDFFDLL-AP 175 (430)
T ss_pred CcEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHH---HHhccceeeecCCC-cC
Confidence 35567889999999999999998765443322221 1455556554442 11111111 00000000111112 46
Q ss_pred HHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccccccc
Q 044926 267 ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTETGGI 345 (569)
Q Consensus 267 ~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE~~~~ 345 (569)
.+.+++.|++++|+++.++|+.+..|+++......+. .++.++++||.+++..++.++ .+|++|++.||+|| |.+
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~~---~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~l 251 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELTI---KPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFL 251 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCCC---CceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hhe
Confidence 8899999999999999999999999999765544332 789999999999999998888 67999999999999 666
Q ss_pred eeecccccccccCcHHHHhhhhcccCcccccceeeE--EeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccccc
Q 044926 346 VVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVD--VLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM 423 (569)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~ 423 (569)
+..|.. .+++...+. ..++ ++|++ +. +..++++ ..+..+
T Consensus 252 a~eC~~-g~lHl~ed~----------------~~vE~~ivD~~-~~---------~~~ViT~------------L~n~~~ 292 (430)
T TIGR02304 252 ASTCRC-GTLHLNEDL----------------VHIEKQYLDEH-KR---------FVPIITD------------FTRTTQ 292 (430)
T ss_pred EEecCC-CCEEEcccc----------------EEEEeeEECCC-Cc---------eEEEEec------------CCCccc
Confidence 666642 223322111 1344 78864 21 4456665 111112
Q ss_pred CCCCeeeecceEEEecC----Cc----E-EEeccCCCeEEe---Cce--eeeHHHHHHH-HHcCCCcceeEEEecCCCCC
Q 044926 424 TDDGWFYTGDVGVMHSD----GY----L-EIKDRSKDVIIS---GGE--NLSSVEVESV-LYSNPAVNEAAVVARPDEFW 488 (569)
Q Consensus 424 ~~~~~~~TGD~~~~~~d----g~----l-~~~GR~~~~i~~---~G~--~v~~~~iE~~-l~~~~~i~~~~v~~~~~~~~ 488 (569)
+ --.|+|||++.+.++ |. + .+.||.+|+++. +|. .++|..++.. +...++|.+..+++...
T Consensus 293 P-lIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~--- 368 (430)
T TIGR02304 293 P-IVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGS--- 368 (430)
T ss_pred e-EEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccC---
Confidence 1 235999999988644 32 3 388999999984 454 4599999887 44578999998887543
Q ss_pred CceeEEEEEe
Q 044926 489 GETPCAFVSL 498 (569)
Q Consensus 489 ~~~~~~~v~~ 498 (569)
..+.+.++.
T Consensus 369 -~~l~v~~~~ 377 (430)
T TIGR02304 369 -AQLELIADC 377 (430)
T ss_pred -CeEEEEEEe
Confidence 334455544
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-12 Score=93.52 Aligned_cols=70 Identities=56% Similarity=0.855 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccc--cEEEEecc-cCCCCCC
Q 044926 464 EVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVP--KTVVFMDE-LPKTSTG 540 (569)
Q Consensus 464 ~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p--~~~~~~~~-iP~t~~G 540 (569)
|||++|.++|+|.+|+|++.+++.+|+.+++++++ +.++|+++++++|+.|++| ..++.+++ ||+|++|
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~G 72 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSG 72 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCC
Confidence 79999999999999999999999889999999998 3389999999999999999 55555577 9999999
Q ss_pred c
Q 044926 541 K 541 (569)
Q Consensus 541 K 541 (569)
|
T Consensus 73 K 73 (73)
T PF13193_consen 73 K 73 (73)
T ss_dssp S
T ss_pred C
Confidence 8
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.3e-08 Score=94.48 Aligned_cols=226 Identities=18% Similarity=0.213 Sum_probs=133.4
Q ss_pred CCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccC----CCCCCC-EEEEecCchhh-hhhhH----HHHHHHhCce
Q 044926 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDW----SVPTQP-VYLWTLPMFHS-NGWCF----PWAMAAVGGT 258 (569)
Q Consensus 189 ~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~----~~~~~d-~~~~~~pl~~~-~g~~~----~~~~~~~g~~ 258 (569)
++++..++.||||||.|--+.+.+..+..+...+...+ +..... .++...|-... ..+.. .......+..
T Consensus 88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 167 (365)
T PF04443_consen 88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR 167 (365)
T ss_pred hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence 45677899999999998767777666554443333322 222222 23333343211 11111 1112222333
Q ss_pred EEEec--cCCHHHHHHHHH----HhCcceeechhHHHHHHHcCCCCCCCCCCcC-CCceEEEeC------CCCcH-HHHH
Q 044926 259 NICIR--KFDASIIFDLIR----RHGVTHMCGAPVVLNMLSNYRDPDKKPLKLA-KPVHLVTAG------APPPA-AVLL 324 (569)
Q Consensus 259 ~~~~~--~~~~~~~~~~l~----~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~-~l~~~~~~g------~~l~~-~~~~ 324 (569)
..+. .++.+.+...+. +.++..+++.|.++-.++...+.....+.+. ..+.+-.|| +.++. +...
T Consensus 168 -~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~ 246 (365)
T PF04443_consen 168 -FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA 246 (365)
T ss_pred -eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence 3333 256776666664 4578899999987776666655555555432 234444443 34554 4445
Q ss_pred HHHh-cCC----eeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCcee
Q 044926 325 RTES-LGF----KVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLG 399 (569)
Q Consensus 325 ~~~~-~~~----~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~G 399 (569)
.+++ +|+ .+++.||+||.......|.... .-.| + .+.|.|+++..+++.| +.|
T Consensus 247 ~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~----------------~~~p-~---wV~iRDp~tl~~~~~G--e~G 304 (365)
T PF04443_consen 247 RLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH----------------FHVP-P---WVIIRDPETLEPLPPG--ETG 304 (365)
T ss_pred HHHHHHCCCCHHHeeeeeeccccchhheeCCCCc----------------ccCC-C---eEEEECCCCCcCCCCC--Cee
Confidence 5554 787 6999999999876555542110 0111 1 3677799999988887 899
Q ss_pred EEEEecCcccccccCCccccccccCCCCeeeecceEEEecC--------CcEEEeccCCC
Q 044926 400 EIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD--------GYLEIKDRSKD 451 (569)
Q Consensus 400 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d--------g~l~~~GR~~~ 451 (569)
-|-+-++... .| .+.+-|.|+|.++.+ .++.++||.+.
T Consensus 305 li~vidl~~~-s~-------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 305 LIQVIDLANT-SY-------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred EEEEEccccc-CC-------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 9988765422 11 334789999988754 26889999874
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=88.44 Aligned_cols=177 Identities=17% Similarity=0.125 Sum_probs=96.8
Q ss_pred CCceEEEeCCCCcHHHHHHHHhc--CCe-eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEe
Q 044926 307 KPVHLVTAGAPPPAAVLLRTESL--GFK-VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVL 383 (569)
Q Consensus 307 ~l~~~~~~g~~l~~~~~~~~~~~--~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 383 (569)
+++.+.+.+..-......++++. +++ +..+|++||+ .+.+.. ... ...+...+...-.+.+
T Consensus 268 ~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg-~i~i~~-~~~--------------~~~~~l~~~~~ffEFi 331 (528)
T PF03321_consen 268 NLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG-FIGIPL-DPE--------------DPGYVLAPDSGFFEFI 331 (528)
T ss_dssp T--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE-EEEEES--CC--------------C--EEE-TTSSEEEEE
T ss_pred CCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce-EEEEec-CCC--------------CCceEeecCCeEEEEE
Confidence 88877766666555666666632 334 4568999995 333221 100 0111122222244444
Q ss_pred CCCCC--------cccCC---CCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEec--CC--cEEEecc
Q 044926 384 DPKSG--------VSAKR---DGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHS--DG--YLEIKDR 448 (569)
Q Consensus 384 d~~~~--------~~~~~---~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~--dg--~l~~~GR 448 (569)
+.++. ..+.. ..|+.-||++++.+ |.| .|+.||++++.. ++ .+.|+||
T Consensus 332 p~~~~~~~~~~~~~~l~~~ele~G~~YelviTt~~---GLy--------------RY~iGDvVrv~gf~~~~P~i~F~~R 394 (528)
T PF03321_consen 332 PVDEDEQNPSEQPKTLLLHELEVGEEYELVITTNS---GLY--------------RYRIGDVVRVTGFYNQTPRIEFVGR 394 (528)
T ss_dssp E-STT-------SSSEEGGG--TT-EEEEEEESTT---S-S--------------SEEECEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCcccccCCCceecHHHhcCCCeEEEEEeccc---cee--------------eeecCCEEEEeeccCCCcEEEEecc
Confidence 44332 11111 12377888888632 222 399999999752 23 7999999
Q ss_pred CCCeEEeCceeeeHHHHHHHHHcC-----CCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccC
Q 044926 449 SKDVIISGGENLSSVEVESVLYSN-----PAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL 519 (569)
Q Consensus 449 ~~~~i~~~G~~v~~~~iE~~l~~~-----~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l 519 (569)
.+.++.+.|++++-.+|+++|.+. -.+.+.++............+.++++... . .+.+.+.+.+.+.|
T Consensus 395 ~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~--~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 395 RGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-P--DDLEELAKALDESL 467 (528)
T ss_dssp TTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--H--HHHHHHHHHHHHCS
T ss_pred CCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-c--hHHHHHHHHHHHHh
Confidence 999999999999999999999874 34667777766322223445666666554 1 24556777776666
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00028 Score=73.53 Aligned_cols=44 Identities=7% Similarity=0.171 Sum_probs=39.0
Q ss_pred eeeecceEEEec----CCcEEEeccCCCeEEeCceeeeHHHHHHHHHc
Q 044926 428 WFYTGDVGVMHS----DGYLEIKDRSKDVIISGGENLSSVEVESVLYS 471 (569)
Q Consensus 428 ~~~TGD~~~~~~----dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~ 471 (569)
.|+.||++++.. -..+.|+||.+.++...|+++.-.+++.+|.+
T Consensus 409 RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 409 RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred EeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 499999999853 25689999999999999999999999998887
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0031 Score=65.19 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=38.8
Q ss_pred eeeecceEEEe----cCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 428 WFYTGDVGVMH----SDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 428 ~~~TGD~~~~~----~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
+|+.||+.++. ....+.|++|.+.+..+.|+|.+-.++..++.+.
T Consensus 422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred EEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 49999999874 3467999999999999999999999998888763
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0059 Score=63.34 Aligned_cols=134 Identities=10% Similarity=0.034 Sum_probs=81.9
Q ss_pred CCceEEEeCCCCcHHHHHHHHhc--CCeeee-cccccccccceeecccccccccCcHHHHhhhhc-ccCcccccceeeEE
Q 044926 307 KPVHLVTAGAPPPAAVLLRTESL--GFKVSH-GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA-RQGVKTTALTEVDV 382 (569)
Q Consensus 307 ~l~~~~~~g~~l~~~~~~~~~~~--~~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~i 382 (569)
+++.|.+.-..-.......++.. |++++. .|++||+..-+-..+..+ +. ......|....++.
T Consensus 294 ~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~-------------p~~~sy~L~p~~~yFEF 360 (606)
T PLN02247 294 RTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSD-------------PSDVSYTLLPNMAYFEF 360 (606)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCC-------------ccCCceeecCCcEEEEE
Confidence 77777766555555555666533 676555 899999632221111000 01 11122233335566
Q ss_pred eCCCCCc-----------------------------ccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecc
Q 044926 383 LDPKSGV-----------------------------SAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGD 433 (569)
Q Consensus 383 ~d~~~~~-----------------------------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD 433 (569)
++.+++. .+..| +.-||+|+.-+ |. -+|+.||
T Consensus 361 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G--~~YelVvTt~~---GL--------------YRYrlGD 421 (606)
T PLN02247 361 LPVDKNNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVG--HYYELVVTTFT---GL--------------YRYRVGD 421 (606)
T ss_pred eecCCCcccccccccccccccccccccccCceecHHHccCC--CeEEEEEEecC---ce--------------EEEecCC
Confidence 6433321 12233 67788887511 11 1499999
Q ss_pred eEEEe----cCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 434 VGVMH----SDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 434 ~~~~~----~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
+.++. ....+.|++|.+.+..+.|++.+-.++..++.+.
T Consensus 422 vv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 422 ILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 99874 3467999999999999999999999998888763
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.58 E-value=9e-05 Score=57.58 Aligned_cols=84 Identities=24% Similarity=0.311 Sum_probs=49.2
Q ss_pred ceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCC-----CCCHHHHHHHHhccCCCCccccEEEEe
Q 044926 457 GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKS-----KPTEKEMIEYCRGRLPHYMVPKTVVFM 531 (569)
Q Consensus 457 G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~l~~~l~~~l~~~~~p~~~~~~ 531 (569)
|.+++|..||++|.++|++.....+...+....+.+.+.|+..++... ....++|.+.+++++.- .| .+.++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~-~V~lv 77 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RP-EVELV 77 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eE-EEEEE
Confidence 789999999999999999994444444444446677888888876431 01124455555554422 23 45555
Q ss_pred --cccCCCCCCcccH
Q 044926 532 --DELPKTSTGKIQK 544 (569)
Q Consensus 532 --~~iP~t~~GKi~r 544 (569)
.+|||+ .||..|
T Consensus 78 ~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 78 PPGTLPRS-EGKAKR 91 (96)
T ss_dssp -TT-S----SSSS-S
T ss_pred CCCCccCC-CCcceE
Confidence 589998 688655
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.094 Score=52.09 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=76.7
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEE
Q 044926 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNV--PALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVF 116 (569)
Q Consensus 39 ~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (569)
.+|+.|....+..+|+.|...|..+||+|.++..-+ ..-+...+|+.++|+.++|+.+.. -+.-..++++.++.+|.
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI~ 187 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVIA 187 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEEE
Confidence 599999999999999999999999999998876611 111677899999999999998833 34557789999999999
Q ss_pred EccccHHHHHHHHhcC
Q 044926 117 VDFHSRALVREAVSLF 132 (569)
Q Consensus 117 ~~~~~~~~~~~~~~~~ 132 (569)
+.+...-.+.+.....
T Consensus 188 ~tps~~l~lae~~~~~ 203 (438)
T COG1541 188 ATPSYLLYLAEEAEEE 203 (438)
T ss_pred EChHHHHHHHHHHHHc
Confidence 9999887777766554
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=88.37 E-value=6.1 Score=40.60 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=64.6
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--HHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVP--ALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
..+|.+++...+...+..+...|+.+||++.++.+-+. ......+|+..+|+.+++... ......++++.++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 35899999999988998888889999999999876543 223445778889998776543 2345678899999999
Q ss_pred EEccccHHHHH
Q 044926 116 FVDFHSRALVR 126 (569)
Q Consensus 116 i~~~~~~~~~~ 126 (569)
+......-.+.
T Consensus 181 ~~~ps~ll~La 191 (445)
T TIGR03335 181 VASVFKLLRLA 191 (445)
T ss_pred EECHHHHHHHH
Confidence 88766544333
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.16 E-value=6.5 Score=40.07 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=68.4
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--HHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEE
Q 044926 39 TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVP--ALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVF 116 (569)
Q Consensus 39 ~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (569)
.+|..++......++..+...|+++||++........ ......+++...|+.++++++.. .+.+...|++.++++++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM 172 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence 4788888777777788888889999999887655432 22334567888999999887654 57788999999999999
Q ss_pred EccccHHHHHHHH
Q 044926 117 VDFHSRALVREAV 129 (569)
Q Consensus 117 ~~~~~~~~~~~~~ 129 (569)
+.+.....+.+..
T Consensus 173 ~~Ps~l~~L~~~~ 185 (422)
T TIGR02155 173 VTPSYMLNLLEEL 185 (422)
T ss_pred EcHHHHHHHHHHH
Confidence 9988776655443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 569 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 3e-58 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 2e-44 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-31 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 5e-29 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-26 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 9e-25 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-24 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 2e-24 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-24 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 2e-23 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 4e-23 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-22 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 7e-22 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 9e-22 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-21 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 9e-21 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-20 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-20 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 3e-20 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 3e-20 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 5e-20 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 6e-20 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-19 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-17 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 5e-16 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-15 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 2e-15 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 9e-15 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 2e-14 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 2e-14 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 3e-14 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 4e-14 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 6e-14 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 8e-14 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 3e-13 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 8e-13 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 5e-13 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 3e-12 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 4e-12 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 6e-11 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 6e-09 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 6e-09 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 6e-09 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 3e-08 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 3e-08 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 4e-08 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 1e-06 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 6e-05 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 569 | |||
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 0.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 1e-169 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 1e-165 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 1e-161 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 1e-146 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 1e-135 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 1e-134 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 1e-132 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 1e-128 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 1e-126 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 1e-125 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 1e-122 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 1e-118 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 1e-117 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 1e-116 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 1e-100 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 3e-92 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 2e-81 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 4e-41 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 3e-38 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 3e-27 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 1e-25 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 1e-25 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 2e-25 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 4e-25 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 6e-25 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 8e-25 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 2e-23 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 9e-23 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 1e-22 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 1e-13 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 7e-04 |
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 700 bits (1808), Expect = 0.0
Identities = 174/560 (31%), Positives = 263/560 (46%), Gaps = 35/560 (6%)
Query: 6 PSPANSTPLTPLVFLERAATVYGDSPSIIYNN----ITYTWSDTHHRCLQLASSLLSIGI 61
PS L FLERAA ++G + + T+++ + R +L L ++G+
Sbjct: 10 PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGV 69
Query: 62 SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS 121
G V+ + N E +FAVP AVL+T N RL + ++ +L H + K++ D +
Sbjct: 70 GVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL 129
Query: 122 RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEF 181
LV V++ + + YE + +
Sbjct: 130 LPLVEAIRGELK---TVQHFVVMDEKAPEGYLA---------------YEEALGEEADPV 171
Query: 182 EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFI--VAVNTLSDWSVPTQPVYLWTLP 239
E + YT+GTT PKGVV+ HR + + +A + + ++ + V L +P
Sbjct: 172 RV----PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 227
Query: 240 MFHSNGWCFPWAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP 298
MFH N WC P+A VG + + D + + +L GVT G P V L++Y
Sbjct: 228 MFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY--L 285
Query: 299 DKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLL 358
+ +L LV G+ P +++ R E +G +V GYGLTET +VV K + L
Sbjct: 286 ESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 345
Query: 359 PAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
EK LKA+ G+ L + V D G +DG LGE+ L+G I GY +
Sbjct: 346 SEEEKLTLKAKTGL-PIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 403
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
TR +T DG+F TGD+ V +GY+EIKDR KD+I SGGE +SSV++E+ L +P V EA
Sbjct: 404 TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA 463
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AVVA P W E P A V + + E+ + + +P VF +E+P+TS
Sbjct: 464 AVVAIPHPKWQERPLAVVVPRGEKPT--PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTS 521
Query: 539 TGKIQKFVLREIAENMGSSS 558
GK K LRE +N +
Sbjct: 522 AGKFLKRALREQYKNYYGGA 541
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 488 bits (1259), Expect = e-169
Identities = 127/531 (23%), Positives = 217/531 (40%), Gaps = 43/531 (8%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
+L + A G +I +YT+ + + LA L + V + N
Sbjct: 6 WLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSI 62
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP 138
L A A + INTRL ++ ++ +L+F + VSL D++
Sbjct: 63 ILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEF 120
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYT 198
+ ++ N Q+ ++ E++V K P D + +T
Sbjct: 121 AGRDITTNGLL---------DNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFT 171
Query: 199 SGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGT 258
SGTT K V R + A+ +L LP++H +G G T
Sbjct: 172 SGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231
Query: 259 NICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPP 318
+ KF+A I +I+ +TH+ P LN L + L+ ++ GA
Sbjct: 232 VRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQK-----ILLGGAKL 286
Query: 319 PAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALT 378
A ++ + + +G+TET ++ P A+ G +A
Sbjct: 287 SATMIETALQYNLPIYNSFGMTETCSQFLTAT--------PEMLHARPDT-VG-MPSANV 336
Query: 379 EVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMH 438
+V + +P + GE++++G +M GYL T ++G+F TGD+ +
Sbjct: 337 DVKIKNP--------NKEGHGELMIKGANVMNGYLYPTDLTGT--FENGYFNTGDIAEID 386
Query: 439 SDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSL 498
+GY+ I DR KD+IISGGEN+ ++E+V P +++A V PD+ WG+ P +
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446
Query: 499 KEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
+ ++ ++I Y L Y VPK +D LP TSTGK+Q+ L
Sbjct: 447 ESD----ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYR 493
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 478 bits (1234), Expect = e-165
Identities = 162/537 (30%), Positives = 240/537 (44%), Gaps = 54/537 (10%)
Query: 19 FLERAATVYGDSPSII--YNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76
L + ATV + + ++ T++ + + A L ++GI++G V+++ PN
Sbjct: 21 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 80
Query: 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDL 136
L + AV INTRL A VS +L SK+V S ++ + P
Sbjct: 81 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADP-- 138
Query: 137 KPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLN 196
P V D + + + + + D + +
Sbjct: 139 --PGTVTDWIGAD-------------------SLAERLRSAAADEPAVECGGD-DNLFIM 176
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVG 256
YTSGTT PKGVVH H + A + S V + L LPMFH A G
Sbjct: 177 YTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRG 236
Query: 257 GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGA 316
T I + +FDA+ ++ LI V P +LN + P+ L + +T GA
Sbjct: 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV--PEFAELDAPDFRYFITGGA 294
Query: 317 PPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTA 376
P P A++ + +V GY LTE+ G LL + + + G + T
Sbjct: 295 PMPEALIKIYAAKNIEVVQGYALTESCGGGT---------LLLSEDALRKAGSAG-RATM 344
Query: 377 LTEVDVLDPKSGVSAKRDGSTL----GEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTG 432
T+V V DG GE+V++ ++ Y P TR D+GWF TG
Sbjct: 345 FTDVAVRGD--------DGVIREHGEGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTG 395
Query: 433 DVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492
D+G + +GYL IKDR KD+IISGGEN+ E+ESV+ P V+E AV+ PDE WGE
Sbjct: 396 DIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Query: 493 CAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
A V + +E++++EYC RL Y +PK V+F + +P+ TGKI K VLRE
Sbjct: 456 AAIVVADQNE---VSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 467 bits (1205), Expect = e-161
Identities = 127/545 (23%), Positives = 202/545 (37%), Gaps = 62/545 (11%)
Query: 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN 73
T R A ++ D + + + + T D R +LAS LL G+ G V+++S N
Sbjct: 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65
Query: 74 VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFP 133
+ EL AV A+L +N RL+A ++ +L +V R +V +
Sbjct: 66 CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG 125
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI 193
I D ++ L + D
Sbjct: 126 ---GVKKAYAIGDGSGPFAP----------------FKDLASDTPFSAPEFGAA---DGF 163
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253
V+ +T+ P+G + + I + + W + V L LP+FH G +
Sbjct: 164 VIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQ 223
Query: 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313
GG ++ KFD + I H VT M +L + + L + VT
Sbjct: 224 QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILD--QAAPAQL---ASLRAVT 278
Query: 314 AGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKL--KARQG 371
P +G +ET G+ P ++ K +
Sbjct: 279 GLDTPETIERFEATCPNATFWATFGQSETSGLST---------FAPYRDRPKSAGRPLFW 329
Query: 372 VKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMTDD 426
V V+D + L GEIVLRG + GY + T+ +
Sbjct: 330 R------TVAVVDA--------EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RN 374
Query: 427 GWFYTGDVGVMHSDGYLEIKDRS--KDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484
GW +TGD+G +DGYL R+ K++I +GGEN+ EVE L +PA+ +A V+ P
Sbjct: 375 GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVP 434
Query: 485 DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
D W E A K G + E+ + Y PK VVF++ LPK + G I +
Sbjct: 435 DPQWSEAIKAVCVCKPG--ESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDR 492
Query: 545 FVLRE 549
++
Sbjct: 493 AAVKT 497
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 431 bits (1111), Expect = e-146
Identities = 126/541 (23%), Positives = 208/541 (38%), Gaps = 57/541 (10%)
Query: 19 FLERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76
L RAAT D ++ + T ++ R +A+ L + G+ V+VV+PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDL 136
+ A+ AV +N RL + ++ L++ + + +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF------QS 120
Query: 137 KPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLN 196
++ D S+ P I D R P +
Sbjct: 121 GSGARIIFLGDLVRDGEPYSYGPPIEDP---------------------QREPAQPAFIF 159
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTLPMFHSNGW-CFPWAMA 253
YTSGTT PK + R + + + V L +P++H G+ A
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313
A+ GT + + +F L+++ VT + P L+ L+ LKL H+
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279
Query: 314 AGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV 372
AGA P AVL + L + + YG TE + + + G
Sbjct: 280 AGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYM-----------------RQPKTGT 322
Query: 373 --KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG-CIMLGYLKDPIGTRKCMTDDGWF 429
+EV ++ GV GE+++ +GYL P T + + DGW+
Sbjct: 323 EMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWY 381
Query: 430 YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489
T DV V +G + I R D+IISGGEN+ E+E VL + P V E V+ D+ WG
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG 441
Query: 490 ETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 548
++ A V + G + + +CR L + PK +D+LPK + K+ + L
Sbjct: 442 QSVTACVVPRLG--ETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLV 499
Query: 549 E 549
+
Sbjct: 500 Q 500
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 403 bits (1037), Expect = e-135
Identities = 130/539 (24%), Positives = 208/539 (38%), Gaps = 51/539 (9%)
Query: 16 PLVFLERAATVYGDSPSIIY-NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNV 74
L +I ++++ R ++A+ L++ G+ G V+ +
Sbjct: 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63
Query: 75 PALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPP 134
L+ A A V +NT + + + K+V D R + +
Sbjct: 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAA---- 119
Query: 135 DLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIV 194
K V D + A F I + D
Sbjct: 120 --KVGATVETLGPDGRG-----------------SLTDAAAGASEAFATIDRGAD-DLAA 159
Query: 195 LNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGW-CFPWAMA 253
+ YTSGTT KG + H + ++ + W V + LP++H++G
Sbjct: 160 ILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219
Query: 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313
G+ I + KFD I DL+ R T + G P L P ++
Sbjct: 220 FARGSMIFLPKFDPDKILDLMAR--ATVLMGVPTFYTRLLQ--SPRLTKETTGHMRLFIS 275
Query: 314 AGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV 372
AP A + G V YG+TET N G
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGMTETNMNTS--------NPYDGDRVP------GA 321
Query: 373 KTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFY 430
AL V DP++G R +G I ++G + GY + P T+ DDG+F
Sbjct: 322 VGPALPGVSARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFI 379
Query: 431 TGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGE 490
TGD+G + GY+ I R KD++I+GG N+ E+ES + + P V E+AV+ P +GE
Sbjct: 380 TGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGE 439
Query: 491 TPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
A V +G + E +++ G+L + +PK V+F+D+LP+ + GK+QK VLRE
Sbjct: 440 GVTAVVVRDKG--ATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRE 496
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 403 bits (1038), Expect = e-134
Identities = 117/556 (21%), Positives = 207/556 (37%), Gaps = 60/556 (10%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L R A DS ++I ++ + + LA SL GI G V NV LY
Sbjct: 32 ILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY 89
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV-----DFHSRALVREAVSLFP 133
FA+ ++ + L+ F + V
Sbjct: 90 ITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFV---- 145
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI 193
+ +V + +D + + +F + +
Sbjct: 146 TEHSSIRVVQLLNDSGEH-----------------NLQDAINHPAEDFTATPSPAD-EVA 187
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253
+ GTT +PK + H + ++ Q YL +P H+ P ++
Sbjct: 188 YFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG 247
Query: 254 AV--GGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311
GGT + A++ F LI +H V P +++ + +LA L
Sbjct: 248 VFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLL 307
Query: 312 VTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQ 370
GA A + R +G ++ +G+ E G + + L + + + Q
Sbjct: 308 QVGGARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTR--------LDDSAEKII-HTQ 357
Query: 371 GVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKCMTD 425
G EV V D +G+ L G ++ RG GY K P
Sbjct: 358 GYPMCPDDEVWVADA--------EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA 409
Query: 426 DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485
+G++ +GD+ + +GY+ ++ R KD I GGE +++ E+E++L +PAV AA+V+ D
Sbjct: 410 NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMED 469
Query: 486 EFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQK 544
E GE CA++ +KE ++ + R + + + +P V +D LP T+ GK+ K
Sbjct: 470 ELMGEKSCAYLVVKEP----LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDK 525
Query: 545 FVLREIAENMGSSSSP 560
LR+ + S+
Sbjct: 526 KQLRQWLASRASAGRA 541
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 394 bits (1014), Expect = e-132
Identities = 125/550 (22%), Positives = 214/550 (38%), Gaps = 67/550 (12%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L A YGD +I N +++ + R +LA+ +GI + V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV-----DFHSRALVREAVSLFP 133
E+ FA+ A+ + ++ + ++ + F R+L R+
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ---- 145
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI 193
L ++++ + + F E L + + D
Sbjct: 146 SKLPTLKNIIVAGEAEE----------------FLPLEDLHTEPVK----LPEVKSSDVA 185
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253
L + G+T K + H ++ + VYL LPM H+ P +
Sbjct: 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLG 245
Query: 254 AV--GGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKP---LKLAKP 308
+ GG + F LI R VT P + + + + L++
Sbjct: 246 VLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQV--- 302
Query: 309 VHLVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
L GA A R G + +G+ E G+V L E+ +
Sbjct: 303 --LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE--GLVNYTR-------LDDPEEIIV- 350
Query: 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKC 422
QG + E V D + G ++ RG + GY K
Sbjct: 351 NTQGKPMSPYDESRVWDD--------HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAAS 402
Query: 423 MTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482
T+DG++ TGD+ + DGY+ ++ R+KD I GGE +++ EVE+ L ++PAV++AA+V+
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462
Query: 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGK 541
PD+F GE C F+ ++ + P E+ + R R L Y +P V F++ P+T GK
Sbjct: 463 MPDQFLGERSCVFIIPRDEA---PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGK 519
Query: 542 IQKFVLREIA 551
+ K LRE
Sbjct: 520 VSKKALREAI 529
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 385 bits (991), Expect = e-128
Identities = 111/556 (19%), Positives = 200/556 (35%), Gaps = 63/556 (11%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L + S +II ++ + LA+ L G+ +G V PNV Y
Sbjct: 35 ILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY 94
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFV-----DFHSRALVREAVSLFP 133
+ FA+ A V+ ++ ++ Q KL+ F + + +
Sbjct: 95 IVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL 154
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI 193
P ++L+ + F + + + ++ + +
Sbjct: 155 S----PEIILMLNHQAT---------------DFGLLDWIETPAETFVDFSSTPAD-EVA 194
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253
+ G+T +PK + H + + + L LP H+ P A+
Sbjct: 195 FFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALG 254
Query: 254 A--VGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKP---LKLAKP 308
GG + + F +I+RH V P + M K LKL
Sbjct: 255 VLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKL--- 311
Query: 309 VHLVTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
L GA P ++ + E L K+ +G+ E + L +++
Sbjct: 312 --LQVGGASFPESLARQVPEVLNCKLQQVFGMAEG----LVNY-----TRLDDSDEQIF- 359
Query: 368 ARQGVKTTALTEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRKC 422
QG ++ E+ ++D + G + RG GY + P +
Sbjct: 360 TTQGRPISSDDEIKIVDE--------QYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQV 411
Query: 423 MTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482
+D ++Y+GD+ DG L + R KD I GGE ++S E+E ++ +P V AA+VA
Sbjct: 412 FDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVA 471
Query: 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKTSTGK 541
DE +GE CAF+ + + + + Y +P + ++ LP T+ GK
Sbjct: 472 IVDEQFGEKSCAFIVSRNPE---LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGK 528
Query: 542 IQKFVLREIAENMGSS 557
+ K LR I +S
Sbjct: 529 VDKKQLRSILNTSTTS 544
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 380 bits (979), Expect = e-126
Identities = 127/549 (23%), Positives = 204/549 (37%), Gaps = 64/549 (11%)
Query: 18 VFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPAL 77
+L R + I + + T+ + R + AS+L ++G+ + +V + AL
Sbjct: 27 AYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL 86
Query: 78 YELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLK 137
+A V NT L +L H ++ V V +A+ +
Sbjct: 87 PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQAL----ESAE 142
Query: 138 PPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNY 197
LI + + + +E L+ P + + D Y
Sbjct: 143 HDGCQLIVSQPRES-----------EPRLAPLFEELIDAAAPAAKAAATGCD-DIAFWLY 190
Query: 198 TSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT-QPVYLWTLPMFHSNG-WC---FPWAM 252
+SG+T PKG VH H ++ A V +F + G FP +
Sbjct: 191 SSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLS- 249
Query: 253 AAVGGTNICIR-KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311
VG T I + + A IF + H T G P + + P+
Sbjct: 250 --VGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS--PNLPARADVAIRIC 305
Query: 312 VTAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQ 370
+AG P + R T G ++ G G TE I +S A
Sbjct: 306 TSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSN---------RAGA-----VEY 351
Query: 371 GVKTTAL----TEVDVLDPKSGVSAKRDGSTL-----GEIVLRGGCIMLGYLKDPIGTRK 421
G TT E+++ D G + G++ ++G + Y + +R
Sbjct: 352 G--TTGRPVPGYEIELRDE--------AGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRA 401
Query: 422 CMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481
W +GD +G RS D++ G+ +S VEVE VL + AV EAAVV
Sbjct: 402 TF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVV 460
Query: 482 ARPDEFWGETPCAFVSLKEG-SKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTG 540
AFV LK + S+ +E+ + + RL + P+ +VF+D+LPKT+TG
Sbjct: 461 GVDHGG-LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATG 519
Query: 541 KIQKFVLRE 549
KIQ+F LRE
Sbjct: 520 KIQRFKLRE 528
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 378 bits (973), Expect = e-125
Identities = 132/566 (23%), Positives = 234/566 (41%), Gaps = 57/566 (10%)
Query: 5 KPSPANSTPLTPLV-FLERAATVYGDSPSIIYNNI--------TYTWSDTHHRCLQLASS 55
P+ P L ++ AA +G+ +II + + + +LAS
Sbjct: 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASG 68
Query: 56 LLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115
+ G+ +G V V PN +A+ AA IN + + +L ++ +
Sbjct: 69 ISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTL 128
Query: 116 FVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVA 175
V + + + ++ + + + ++
Sbjct: 129 VVHSMLYENFKPVL----EKTGVERVFVVGGEVN-------------------SLSEVMD 165
Query: 176 KGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYL 235
G +FE ++ E D ++ YT GTT PKGV+ H + A+ + +
Sbjct: 166 SGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIV 225
Query: 236 WTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY 295
+PMFHS + M VG + + F+ ++ + I ++ T P LN+L N
Sbjct: 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 296 RDPDKKPLKLAKPVHLVTAGAPPPAAVL--------LRTESLGFKVSHGYGLTETGGIVV 347
+ K + T P A++ + + + + +G+TE +V
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT 345
Query: 348 SCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407
+ P K QGV + E+ V+ + G GEIV+RG
Sbjct: 346 TN---------PPLRLDKSTT-QGV-PMSDIELKVISLEDGRELGVG--ESGEIVIRGPN 392
Query: 408 IMLGYLKDPIGTRKCMTD----DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSV 463
I GY K ++C +F TGDVG + +G+L +DR K+VI G ++
Sbjct: 393 IFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPF 452
Query: 464 EVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYM 523
E+E++L + AV + AV+ +PDE GE P AF+ LK + K E+++IE+ R R+ Y
Sbjct: 453 ELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYK 512
Query: 524 VPKTVVFMDELPKTSTGKIQKFVLRE 549
+ V F++ELP+T++GK+ + +LRE
Sbjct: 513 RVREVEFVEELPRTASGKLLRRLLRE 538
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 370 bits (951), Expect = e-122
Identities = 123/551 (22%), Positives = 199/551 (36%), Gaps = 67/551 (12%)
Query: 6 PSPANSTPLTPL-VFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRG 64
P S + D P++ + + T+++ A I
Sbjct: 14 LVPRGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGA 68
Query: 65 HVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRAL 124
V+V + A A +N + + ++ +L LV
Sbjct: 69 GRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP------ 122
Query: 125 VREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWI 184
PD + PP + + D V ++ P
Sbjct: 123 ---------PDAELPPALGALERVDVDVRARGAVPE------------------------ 149
Query: 185 RPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244
+ DP ++ YTSGTT PKG V R + W + V + LP+FH +
Sbjct: 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVH 209
Query: 245 GW-CFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPL 303
G GG+ + +F + G T + G P + + ++ D +
Sbjct: 210 GLVLGILGPLRRGGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHRIAETLPADPELA 268
Query: 304 KLAKPVHL-VTAGAPPPAAVLLRTESL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAA 361
K L V+ A P R + G +V YG+TET
Sbjct: 269 KALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS--------VRADGE 320
Query: 362 EKAKLKARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGT 419
+A G L E+ +++ A DG ++GEI +RG + YL P T
Sbjct: 321 PRA------GTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 420 RKCMTDDGWFYTGDVGVMHSDGYLEIKDR-SKDVIISGGENLSSVEVESVLYSNPAVNEA 478
T+DG+F TGD+ V DGY+ I R + D+I SGG + + E+E+ L +P V EA
Sbjct: 375 AAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREA 434
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AV PD GE A++ + + P + ++ RL + P+ V ++D +P+
Sbjct: 435 AVTGEPDPDLGERIVAWIVPADPAAP-PALGTLADHVAARLAPHKRPRVVRYLDAVPRND 493
Query: 539 TGKIQKFVLRE 549
GKI K L
Sbjct: 494 MGKIMKRALNR 504
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 358 bits (922), Expect = e-118
Identities = 118/568 (20%), Positives = 209/568 (36%), Gaps = 52/568 (9%)
Query: 6 PSPANSTPLTPLV-FLERAATVYGDSPSIIY----NNITYTWSDTHHRCLQLASSLLSIG 60
P P L + Y +I + + Y++++ + L +L + G
Sbjct: 14 PKPFYPIEEGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYG 73
Query: 61 ISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFH 120
+ +++ S N + A F + N R + L + +VF
Sbjct: 74 LVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKK 133
Query: 121 SRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPE 180
V +V++ D + + F +
Sbjct: 134 GLDKVITVQKTVT---TIKTIVILDSKVDY-----RGYQCLDT---FIKRNTPPGFQASS 182
Query: 181 FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP----VYLW 236
F+ + + ++ +SG+T PKGV H I + + D Q L
Sbjct: 183 FKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENI-VTRFSHARDPIYGNQVSPGTAVLT 241
Query: 237 TLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYR 296
+P H G G + + KFD ++ + T + P + +L+
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301
Query: 297 DPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL--GFKVSHGYGLTETGGIVVSCAWKRN 354
+K L + + GAP V V GYGLTET ++ +
Sbjct: 302 LLNKYDLSNLVEI--ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDD 359
Query: 355 WN-----LLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIM 409
++P + V+D + S + GE+ ++G +M
Sbjct: 360 KPGASGKVVPL-----------------FKAKVIDLDTKKSLGPN--RRGEVCVKGPMLM 400
Query: 410 LGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVL 469
GY+ +P T++ + ++GW +TGD+G + + I DR K +I G + E+ESVL
Sbjct: 401 KGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVL 460
Query: 470 YSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL-PHYMVPKTV 528
+P++ +A V PD GE P A V L+ G TEKE+++Y ++ + V
Sbjct: 461 LQHPSIFDAGVAGVPDPVAGELPGAVVVLESG--KNMTEKEVMDYVASQVSNAKRLRGGV 518
Query: 529 VFMDELPKTSTGKIQKFVLREIAENMGS 556
F+DE+PK TGKI +REI + +
Sbjct: 519 RFVDEVPKGLTGKIDGRAIREILKKPVA 546
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-117
Identities = 139/545 (25%), Positives = 233/545 (42%), Gaps = 50/545 (9%)
Query: 19 FLERAATVYGDSPSII--YNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76
++ + + P +I N YT++D ++AS L IGI +G V+ + P+ P
Sbjct: 27 YVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE 86
Query: 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDL 136
A++ N ++ + ++KL+ V++
Sbjct: 87 FVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFA-----RE 141
Query: 137 KPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLN 196
++ + D + + L + E + + D + L
Sbjct: 142 SDVKVMCVDSAPDGCLH----------------FSELTQADENEAPQVDISPD-DVVALP 184
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP-----VYLWTLPMFHSNGW-CFPW 250
Y+SGTT PKGV+ H+G+ I +V D P V L LPMFH
Sbjct: 185 YSSGTTGLPKGVMLTHKGL-ITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIML 243
Query: 251 AMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVH 310
VG + + KF+ + LI ++ V+ P V+ ++ PD L+
Sbjct: 244 CGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK--SPDLDKHDLSSLRM 301
Query: 311 LVTAGAPPPAAVLLRTESL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA 368
+ + GAP + + ++ GYG+TE G ++ C A K
Sbjct: 302 IKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMC---------LAFAKEPFDI 352
Query: 369 RQG-V-KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDD 426
+ G E+ ++DP++G S R+ GEI +RG IM GYL DP T + + +
Sbjct: 353 KPGACGTVVRNAEMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKE 410
Query: 427 GWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDE 486
GW +TGD+G + D L I DR K++I G ++ E+E++L ++P +++AAVV DE
Sbjct: 411 GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDE 470
Query: 487 FWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFV 546
GE P AFV E S+ TE E+ +Y ++ Y K V F++ +PK +GKI +
Sbjct: 471 DAGEVPVAFVVKSEK--SQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKN 528
Query: 547 LREIA 551
L+E
Sbjct: 529 LKEKL 533
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 353 bits (908), Expect = e-116
Identities = 123/564 (21%), Positives = 211/564 (37%), Gaps = 53/564 (9%)
Query: 6 PSPANSTPLTPLV-FLERAATVYGDSPSII-----YNNITYTWSDTHHRCLQLASSLLSI 59
P+P L +A Y P I + + T+++ ++LA ++
Sbjct: 11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRY 70
Query: 60 GISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDF 119
G++ H + V S N + F + N + R + + Q +VFV
Sbjct: 71 GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSK 130
Query: 120 HSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDP 179
+ P K ++I D QS + ++ +
Sbjct: 131 KGLQKILNVQKKLPIIQK----IIIMDSKTDYQGFQSMYTFVTS-------HLPPGFNEY 179
Query: 180 EFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP----VYL 235
+F + ++ +SG+T PKGV HR V + D Q L
Sbjct: 180 DFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA-CVRFSHARDPIFGNQIIPDTAIL 238
Query: 236 WTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNY 295
+P H G G + + +F+ + ++ + + P + + +
Sbjct: 239 SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS 298
Query: 296 RDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL--GFKVSHGYGLTETGGIVVSCAWKR 353
DK L + + GAP V + GYGLTET ++
Sbjct: 299 TLIDKYDLSNLHEI--ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 356
Query: 354 NWN-----LLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCI 408
+ ++P E V+D +G + + GE+ +RG I
Sbjct: 357 DKPGAVGKVVPF-----------------FEAKVVDLDTGKTLGVN--QRGELCVRGPMI 397
Query: 409 MLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESV 468
M GY+ +P T + DGW ++GD+ D + I DR K +I G ++ E+ES+
Sbjct: 398 MSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
Query: 469 LYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL-PHYMVPKT 527
L +P + +A V PD+ GE P A V L+ G TEKE+++Y ++ +
Sbjct: 458 LLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG--KTMTEKEIVDYVASQVTTAKKLRGG 515
Query: 528 VVFMDELPKTSTGKIQKFVLREIA 551
VVF+DE+PK TGK+ +REI
Sbjct: 516 VVFVDEVPKGLTGKLDARKIREIL 539
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 325 bits (836), Expect = e-100
Identities = 133/563 (23%), Positives = 235/563 (41%), Gaps = 42/563 (7%)
Query: 19 FLERAATVYGDSPSII--YNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76
++ + + + P +I YT+SD H Q+A++ +G+++ VV ++ PN P
Sbjct: 66 YIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE 125
Query: 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDL 136
A F A N ++ + +KL+ + ++ +
Sbjct: 126 FVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQ-----ND 180
Query: 137 KPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLN 196
+V I D++ P F+ + + + + D + L
Sbjct: 181 DGVVIVCIDDNESV--------PIPEGCLRFTELTQSTTEASEVIDSVEISPD-DVVALP 231
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP-----VYLWTLPMFHSNG-WCFPW 250
Y+SGTT PKGV+ H+G+ + +V D P V L LPMFH
Sbjct: 232 YSSGTTGLPKGVMLTHKGL-VTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIML 290
Query: 251 AMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVH 310
VG + + KF+ +++ +LI+R VT P ++ ++ + + L+
Sbjct: 291 CGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAK--SSETEKYDLSSIRV 348
Query: 311 LVTAGAPPPAAVLLRTESL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKA 368
+ + AP + + K+ GYG+TE G ++ K
Sbjct: 349 VKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMS---------LGFAKEPFPV 399
Query: 369 RQGV--KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDD 426
+ G E+ ++DP +G S R + GEI +RG IM GYL +P T + + D
Sbjct: 400 KSGACGTVVRNAEMKIVDPDTGDSLSR--NQPGEICIRGHQIMKGYLNNPAATAETIDKD 457
Query: 427 GWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDE 486
GW +TGD+G++ D L I DR K++I G ++ E+E++L +P + + AVVA +E
Sbjct: 458 GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEE 517
Query: 487 FWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFV 546
GE P AFV + S+ +E ++ ++ ++ Y V F + +PK +GKI +
Sbjct: 518 AAGEVPVAFVVKSKD--SELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKD 575
Query: 547 LREIAENMGSSSSPLSRSLTSRM 569
LR N S +
Sbjct: 576 LRAKLANGLGSGMASVEEFRNAQ 598
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 3e-92
Identities = 128/557 (22%), Positives = 214/557 (38%), Gaps = 72/557 (12%)
Query: 28 GDSPSIIYNN-----ITYTWSDTHHRCLQLASSLL-SIGISRGHVVSVVSPNVPALYELH 81
SP++ + N + + + + Q A+ L + G+ RG V+VV P VP + +
Sbjct: 57 PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116
Query: 82 FAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPL 141
A + ++ + + LQ ++K + V S P L+
Sbjct: 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE-CPSLRI--K 173
Query: 142 VLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGT 201
+L+S+ + ++ L+ + + ++ + + +TSGT
Sbjct: 174 LLVSEKSCDGWLN---------------FKKLLNEASTTHHCVETGSQ-EASAIYFTSGT 217
Query: 202 TMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP-----MFHSNGWCFPWAMAAVG 256
+ PK H + + + A + + WT+ + PWA+ G
Sbjct: 218 SGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIM-WTISDTGWILNILCSLMEPWAL---G 273
Query: 257 GTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNML--SNYRDPDKKPLKLAKPVHLV 312
KFD +I + + + M GAP+V ML + L+ + V
Sbjct: 274 ACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQ-----NCV 328
Query: 313 TAGAPPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQG 371
T G L G + YG TETG + +K + G
Sbjct: 329 TVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKT--------------MKIKPG 374
Query: 372 VKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGG-----CIMLGYLKDPIGTRKCMT 424
TA +V ++D K G T G+I +R I GY+ +P T +
Sbjct: 375 YMGTAASCYDVQIIDDK-GNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR 431
Query: 425 DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484
++ GD G+ DGY + R+ D+I S G + EVE+ L +PAV E AV++ P
Sbjct: 432 G-DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSP 490
Query: 485 DEFWGETPCAFVSLKEGSKSKPTE---KEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGK 541
D GE AFV L S E KE+ ++ + Y P+ + F+ LPKT TGK
Sbjct: 491 DPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGK 550
Query: 542 IQKFVLREIAENMGSSS 558
IQ+ LR+ M +
Sbjct: 551 IQRAKLRDKEWKMSGKA 567
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 2e-81
Identities = 115/570 (20%), Positives = 212/570 (37%), Gaps = 88/570 (15%)
Query: 20 LERAATVYGDSPSIIYNN-----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNV 74
++ A + ++I+ + +T+ D + + A+ + GI +G V + +
Sbjct: 62 VDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121
Query: 75 PALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPP 134
+ + A+ L R + ++ K++ V E V
Sbjct: 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD--VPEQVDEAHA 179
Query: 135 DLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEW---D 191
+ PL D + + + P FE D
Sbjct: 180 ECGDIPLKKAKVGGDVLEGWID-------------FRKELEESSPIFERPTGEVSTKNED 226
Query: 192 PIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQP--VYLWTLPMFHSNGW--- 246
++ ++SGT PK V H + + + + + + ++ +T+ +GW
Sbjct: 227 ICLVYFSSGTAGFPKMVEHDNT--YPLGHILTAKYWQNVEDDGLH-YTVA---DSGWGKC 280
Query: 247 ---CF--PWAMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNML--SNYRD 297
W G +F+A + + ++GVT C P + L +
Sbjct: 281 VWGKLYGQWIA---GCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSH 337
Query: 298 PDKKPLKLAKPVHLVTAGAP-PPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWN 356
+ LK + V AG P P E G K+ G+G TET + + W
Sbjct: 338 YNFSTLK-----YAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPW----- 387
Query: 357 LLPAAEKAKLKARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTL-----GEIVLRGG--- 406
++ + G +++++D DG GEIV+
Sbjct: 388 ---------MEPKPGSIGKPTPGYKIELMDR--------DGRLCEVGEEGEIVINTMEGK 430
Query: 407 --CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVE 464
+ + Y KDP T + D G+++TGD+ M DGYL R+ D+I + G + E
Sbjct: 431 PVGLFVHYGKDPERTEETWHD-GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFE 489
Query: 465 VESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYM 523
VES L +PAV E A+ PD G+ A + L + S + E+ ++ + Y
Sbjct: 490 VESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYK 549
Query: 524 VPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
P+ + F+ ELPKT +GKI++ +R+ ++
Sbjct: 550 YPRIIEFVPELPKTISGKIRRVEIRDKDQS 579
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 4e-41
Identities = 96/586 (16%), Positives = 179/586 (30%), Gaps = 95/586 (16%)
Query: 20 LERAATVYGDSPSIIY----NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVP 75
+ A + S + T T+ +A++L + G G V ++
Sbjct: 17 VRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGL 76
Query: 76 ALYELHFAVPFAAAV---LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLF 132
L + +A + + ++ + + +V +
Sbjct: 77 PLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNT 136
Query: 133 PPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDP 192
P P + + + SS +I + D
Sbjct: 137 NPKFLKIP-AIALESIELNRSSSWQPTSIKSN--------------------------DI 169
Query: 193 IVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYL-WTLPMFH----SNGWC 247
L YTSG+TM PKGV+ H + + + + + + W LP H
Sbjct: 170 AFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSW-LPPHHDMGLIGCIL 228
Query: 248 FPWAMAAVGGTNICIRKFDASIIF--------DLIRRHGVTHMCGAPVVLNMLSNY-RDP 298
P G I + F F I ++ T + R+
Sbjct: 229 TPIY---GGIQAIMMSPFS----FLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE 281
Query: 299 DKKPLKLAKPVHLVTAGAPPPAAVLLR----TESLGFK---VSHGYGLTETGGIVVSCAW 351
K+ L L+ V P + + GF+ YGL E +V
Sbjct: 282 KKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTP 341
Query: 352 KRNWNLLP------AAEKAKLKARQGVKTTAL-------TEVDVLDPKSGVSAKRDGSTL 398
++ L + + L EV ++DP + + +
Sbjct: 342 GSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPC-DFD-QV 399
Query: 399 GEIVLRGGCIMLGYLKDPIGTRKCMT--------DDGWFYTGDVGVMHSDGYLEIKDRSK 450
GEI ++ + GY P TR + TGD+G +H + L + R K
Sbjct: 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIK 458
Query: 451 DVIISGGENLSSVEVE-SVLYSNPAV--NEAAVVARPDEFWGETPCAFVSLKEGSKSKPT 507
D+II G+N ++E S+++S + A +E +K
Sbjct: 459 DLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVA 517
Query: 508 EKEMIEYCRGRLP--HYMVPKTVVFMD--ELPKTSTGKIQKFVLRE 549
+ + + H + T+V + +P T++GKI++ R+
Sbjct: 518 QDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRK 563
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-27
Identities = 81/392 (20%), Positives = 127/392 (32%), Gaps = 88/392 (22%)
Query: 197 YTSGTTMSPKGVVHCHRGI--FIVAVNTLSDWSVPTQPVYLWTLPMFHSNG-----WCFP 249
+TSGTT PKGV H + F + + + VP QP L +
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQML----AQPPYSFDLSVMYWA 207
Query: 250 WAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLA 306
+A +GGT + K D +F I + V P +M D + +
Sbjct: 208 PTLA-LGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPAL 266
Query: 307 KPVHLVTAG-APPPAAVL-LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKA 364
H G + L K+ + YG TE V A +
Sbjct: 267 T--HFYFDGEELTVSTARKLFERFPSAKIINAYGPTEAT--VALSAI--------EITRE 314
Query: 365 KLKARQGV---KTTALTEVDVLDPK-----SGVSAKRDGSTLGEIVLRGGCIMLGYLK-- 414
+ + + ++D SG GEI++ G + GYL
Sbjct: 315 MVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--------GEIIVTGPAVSKGYLNNP 366
Query: 415 ---------DPIGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKD--VIISG-----G 457
G Y TGD+G + D L R D + +G
Sbjct: 367 EKTAEAFFTFK-GQP--A------YHTGDIGSLTEDNILLYGGRL-DFQIKYAGYRIELE 416
Query: 458 ENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP--CAFVSLKEGSKSKPTE-----KE 510
+ V L +P V A V R ++ + A++ +K+G K + K
Sbjct: 417 D------VSQQLNQSPMVASAVAVPRYNKE-HKVQNLLAYIVVKDGVKERFDRELELTKA 469
Query: 511 MIEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
+ + + YM+P ++ D LP T GKI
Sbjct: 470 IKASVKDHMMSYMMPSKFLYRDSLPLTPNGKI 501
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 84/499 (16%), Positives = 146/499 (29%), Gaps = 100/499 (20%)
Query: 6 PSPANSTPLTPLVFLERAATVYGDSPSIIYNN---------ITYTWSDTHHRCLQLASSL 56
P ++ + + L A + P+ + + IT TWS + R L +A L
Sbjct: 16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQEL 75
Query: 57 LSIGISRGHVVSVVSPNVPALYELHF--------AVPFAAAVLNTINTRLDARTVSLLLQ 108
G S G V + +P AVP + + R D+ +L
Sbjct: 76 SRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDS-----VLS 129
Query: 109 HCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168
+ + V + V+ P + PP ++ D D +
Sbjct: 130 DSSPVAILTTSSAVDDVVQHVARRPGE--SPPSIIEVDLLDLDAPNGYTFKEDEYP---- 183
Query: 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIF------IVAVNT 222
L YTSG+T +P GVV H+ + +
Sbjct: 184 ----------------------STAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFA 221
Query: 223 LSDWSVPTQPVYL-WTLPMFHSNGWCFPWAMAAVGGTNICI---RKF--DASIIFDLIRR 276
+D P + W LP +H G +GG + F + L+
Sbjct: 222 DTDGIPPPNSALVSW-LPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMAS 280
Query: 277 HGVTHMCGAPVVLNMLSNY-RDPDKKPLKLAKPVHLVTAGAPPPAAVLLR----TESLGF 331
+ + D D L + +++ AA + R
Sbjct: 281 DFHAFSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNL 340
Query: 332 K---VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTAL----------- 377
+ + Y L E V + + + + L A
Sbjct: 341 QERVIRPSYWLAEATVYVATSKPGQPPETVD-FDTESLSAGHAKPCAGGGATSLISYMLP 399
Query: 378 --TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCM-----------T 424
V ++D + + DG T+GEI + G + GY + P + +
Sbjct: 400 RSPIVRIVDSDTCIEC-PDG-TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTP 457
Query: 425 DDGWFYTGDVGVMHSDGYL 443
+ W TGD G + DG +
Sbjct: 458 EGPWLRTGDSGFVT-DGKM 475
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 84/387 (21%), Positives = 135/387 (34%), Gaps = 92/387 (23%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMFHSNG-----WCF 248
YTSGTT PKG + H I + + Q +L + + F
Sbjct: 614 YTSGTTGKPKGNITTHANI----QGLVKHVDYMAFSDQDTFL----SVSNYAFDAFTFDF 665
Query: 249 PWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKL 305
+M I + D + DLI + V M + N+L++ + K L+
Sbjct: 666 YASMLN-AARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLR- 723
Query: 306 AKPVHLVTAG--APPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
++ G A P K+ + YG TE V + +
Sbjct: 724 ----CILFGGERASVPHVRKALRIMGPGKLINCYGPTEG---TVFATA---HVVHDLPDS 773
Query: 364 AKLKARQGV---KTTALTEVDVLDPKS-----GVSAKRDGSTLGEIVLRGGCIMLGYLKD 415
+ K + V +L+ +S G GE+ + G + GY+
Sbjct: 774 I-----SSLPIGKPISNASVYILNEQSQLQPFGAV--------GELCISGMGVSKGYVNR 820
Query: 416 P-------------IGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKD-VIISG---- 456
G + Y TGD+ DG +E R D V I G
Sbjct: 821 ADLTKEKFIENPFKPGET--L------YRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIE 872
Query: 457 -GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYC 515
E +E L P V +A VVA E + A++ + + +++ +
Sbjct: 873 LEE------IEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ----LSAEDVKAHL 922
Query: 516 RGRLPHYMVPKTVVFMDELPKTSTGKI 542
+ +LP YMVP+T F+DELP T+ GK+
Sbjct: 923 KKQLPAYMVPQTFTFLDELPLTTNGKV 949
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 71/391 (18%), Positives = 125/391 (31%), Gaps = 93/391 (23%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVY------LWTLPMFHSNG----- 245
YTSG+T +PKGV + + DW + ++
Sbjct: 150 YTSGSTGNPKGVQISAANL----QSFT-DW---ICADFPVSGGKIFLN--QAPFSFDLSV 199
Query: 246 WCFPWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKP 302
+ + GGT C+ K ++F+ +++ G+ P + M +
Sbjct: 200 MDLYPCLQS-GGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL 258
Query: 303 LKLAKPVHLVTAG-APPPAAVL-LRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPA 360
L A + G P + L K+ + YG TE V + +
Sbjct: 259 LPHAD--TFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT--VAVTSVE-------- 306
Query: 361 AEKAKLKARQGV---KTTALTEVDVLDPK-----SGVSAKRDGSTLGEIVLRGGCIMLGY 412
+ + + + ++D + G GEIV+ G + GY
Sbjct: 307 ITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--------GEIVIAGPSVSRGY 358
Query: 413 LK-----------DPIGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKD--VIISG-- 456
L G Y TGD G + DG + + R D + + G
Sbjct: 359 LGEPELTEKAFFSHE-GQW--A------YRTGDAGFI-QDGQIFCQGRL-DFQIKLHGYR 407
Query: 457 ---GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE--KEM 511
E +E + + V A V+ E A + +E K + +
Sbjct: 408 MELEE------IEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAI 461
Query: 512 IEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
+ LP YM+P+ ++ D + T+ GKI
Sbjct: 462 KKELAASLPAYMIPRKFIYQDHIQMTANGKI 492
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-25
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 426 DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485
+++GD DGY I R DV+ G L + E+ES L ++P + EAAVV P
Sbjct: 493 KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPH 552
Query: 486 EFWGETPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544
G+ A+V+L G + S E+ + R + P + + D LPKT +GKI +
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612
Query: 545 FVLREIAEN 553
+LR+IA
Sbjct: 613 RILRKIAAG 621
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-25
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 426 DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485
G+++TGD DGY+ I R DV+ G LS+ E+E+ + +P V E AVV D
Sbjct: 502 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFND 561
Query: 486 EFWGETPCAFVSLKEGSKSKPTE--------KEMIEYCRGRLPHYMVPKTVVFMDELPKT 537
+ G+ AFV LK S K ++ R + + PK ++ +D+LPKT
Sbjct: 562 DLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKT 621
Query: 538 STGKIQKFVLREIAEN 553
+GKI + +LR+I
Sbjct: 622 RSGKIMRRILRKILAG 637
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-25
Identities = 72/389 (18%), Positives = 115/389 (29%), Gaps = 89/389 (22%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWT----LPMFHSNG-----WC 247
YTSG+T +PKGV + + V+ W +
Sbjct: 151 YTSGSTGNPKGVQITYNCL----VSFT-KW---AVEDFNLQTGQVFLNQAPFSFDLSVMD 202
Query: 248 FPWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLK 304
++ GGT I K +F + + + P M + L
Sbjct: 203 IYPSLVT-GGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLP 261
Query: 305 LAKPVHLVTAG-APPPAAV-LLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAE 362
K + G P L + + YG TE V
Sbjct: 262 NMK--TFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEAT--VAVTGIH--------VT 309
Query: 363 KAKLKARQGV---KTTALTEVDVLDPKS-----GVSAKRDGSTLGEIVLRGGCIMLGYLK 414
+ L + + + + ++ G GEIV+ G + +GYL
Sbjct: 310 EEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--------GEIVIVGPSVSVGYLG 361
Query: 415 -----------DPIGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKD--VIISG---- 456
G R Y TGD G + +G L R D + + G
Sbjct: 362 SPELTEKAFTMID-GER--A------YKTGDAGYV-ENGLLFYNGRL-DFQIKLHGYRME 410
Query: 457 -GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK--PTEKEMIE 513
E +E L + V A +V + A V E S K + +
Sbjct: 411 LEE------IEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKK 464
Query: 514 YCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
RLP+YM+P+ ++ +P T GK+
Sbjct: 465 ELNERLPNYMIPRKFMYQSSIPMTPNGKV 493
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 79/389 (20%), Positives = 126/389 (32%), Gaps = 81/389 (20%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPM--------FHSNG--- 245
YTSG+T +PKGV + + W V +L + S
Sbjct: 182 YTSGSTGTPKGVRVSRHNL----SSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV 237
Query: 246 --WCFPWAMAAVGGTNICIRKFDASI--IFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKK 301
A G + + + + R GVTH P +L+ P+
Sbjct: 238 HIGEMFLAWRF-GLC-AVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTG--LVPEDA 293
Query: 302 P-LKLAKPVHLVTAG-APPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLP 359
P L +L G P + + S + + YG TE I S +LP
Sbjct: 294 PHLV-----YLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVT-IGCSA-----GRILP 342
Query: 360 AAEKAKLKARQGVKTTALTEVDVLDPKS------GVSAKRDGSTLGEIVLRGGCIMLGYL 413
++ + G + VL P S G++ GE+V+ G + GYL
Sbjct: 343 DSDTRCI----G-HPLGDSVAHVLAPGSNEHVKKGMA--------GELVIEGSLVANGYL 389
Query: 414 KDPIGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKD-VIISG-----GENLSSVEVE 466
P C + Y TGD+ M +D + R + V + G GE V
Sbjct: 390 NRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGE------VS 443
Query: 467 SVLYSNPAVNEAAVVARPDEFWGETP--CAFV----------SLKEGSKSKPTEKEMIEY 514
V+ S + V + +FV K + +
Sbjct: 444 EVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQA 503
Query: 515 CRGRLPHYMVPKTVVFMDELP-KTSTGKI 542
C LP YMVP ++ + +P + ++ K
Sbjct: 504 CEQTLPAYMVPDFIIPISFIPLRDTSAKT 532
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-23
Identities = 85/391 (21%), Positives = 135/391 (34%), Gaps = 106/391 (27%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWT----LPMFHSNG-----WC 247
YTSGTT +PKG + H+GI N + + T + F S W
Sbjct: 189 YTSGTTGNPKGTMLEHKGI----SNLKV-F---FENSLNVTEKDRIGQFASISFDASVWE 240
Query: 248 FPWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPL 303
A+ G + + I D I + +T + P + L R +
Sbjct: 241 MFMALLT-GAS-LYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQ-- 296
Query: 304 KLAKPVHLVTAG-APPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAE 362
L+TAG A P+ L+ + YG TET + + W
Sbjct: 297 ------TLITAGSATSPS--LVNKWKEKVTYINAYGPTET--TICATTW----------- 335
Query: 363 KAKLKARQGVKTT------ALTEVDVLDPKS-----GVSAKRDGSTLGEIVLRGGCIMLG 411
+ T++ ++D G + GE+ + G + G
Sbjct: 336 --VATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--------GELCIGGEGLARG 385
Query: 412 YLKDP-------------IGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKD-VIISG 456
Y K P G + + Y TGD SDG +E R + V I G
Sbjct: 386 YWKRPELTSQKFVDNPFVPGEK--L------YKTGDQARWLSDGNIEYLGRIDNQVKIRG 437
Query: 457 -----GENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEM 511
E VES+L + ++E AV D CA+ ++ +++
Sbjct: 438 HRVELEE------VESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----IPLEQL 487
Query: 512 IEYCRGRLPHYMVPKTVVFMDELPKTSTGKI 542
++ LP YM+P + +D++P TS GKI
Sbjct: 488 RQFSSEELPTYMIPSYFIQLDKMPLTSNGKI 518
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 70/382 (18%), Positives = 114/382 (29%), Gaps = 86/382 (22%)
Query: 197 YTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG-----WCFPWA 251
++SGTT PK + H GI + + + + P + + A
Sbjct: 171 FSSGTTGRPKAIACTHAGITRLCLGQ--SF-LAFAPQMRFL--VNSPLSFDAATLEIWGA 225
Query: 252 MAAVGGTNICIRK--FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPV 309
+ GG + D ++ LI G + N L + L+
Sbjct: 226 LLN-GGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLR----- 279
Query: 310 HLVTAG--APPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLK 367
L+T G P + +GYG TE +C ++ + +
Sbjct: 280 QLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN--TTFTCCH-----VVTDDDLEEDD 332
Query: 368 ARQGVKTTALTEVDVLD------PKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDP----- 416
G K A T V +LD + + GEIV G + GY D
Sbjct: 333 IPIG-KAIAGTAVLLLDEHGQEIAEPDRA--------GEIVAFGAGLAQGYRNDAARTRA 383
Query: 417 ---------IGTRKCMTDDGWFY-TGDVGVMHSDGYLEIKDRSKD-VIISG-----GENL 460
R Y TGD G L R V ++G
Sbjct: 384 SFVELPYRGRLLR--A------YRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPA-- 433
Query: 461 SSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLP 520
+E P + + A++ R + CA+ + +LP
Sbjct: 434 ----LEQRFRRQPGILDCALLVRERNGVKQLLCAWT---------GKADASPQALLRQLP 480
Query: 521 HYMVPKTVVFMDELPKTSTGKI 542
+ P V ++ LP T+ GK+
Sbjct: 481 TWQRPHACVRVEALPLTAHGKL 502
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 1e-13
Identities = 37/307 (12%), Positives = 71/307 (23%), Gaps = 48/307 (15%)
Query: 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN 221
+D + FS + + + + + GTT +PK VV I +
Sbjct: 63 NDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISW 122
Query: 222 T---LSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASI--------- 269
L +P A G D
Sbjct: 123 RMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGD 182
Query: 270 --------------IFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG 315
+ + + + + P VL L + P+ + G
Sbjct: 183 TATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL--KRPEVVLQMKQSLAQITLGG 240
Query: 316 APPPAAVLLRTES---LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV 372
+ S + S YG T G+ S ++ +
Sbjct: 241 TELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSL-----------LITSESQQVIYD 289
Query: 373 KTTALTEVDVLDPKSGVSAKRDGSTLGEIV---LRGGCIMLGYLKDPIGTRKCMTDDGWF 429
+ DV+D + + + G G ++ L + R G+
Sbjct: 290 SFSPFITYDVVDSITAQTVE-YGER-GNVIVTHLSPWAFYPRVAERDTAIRL-PGVSGFA 346
Query: 430 YTGDVGV 436
+
Sbjct: 347 GDRLADI 353
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 58/342 (16%), Positives = 111/342 (32%), Gaps = 84/342 (24%)
Query: 248 FPWAMAAVGGTNICIRKFDASII----------FDLIRRHGVTHMCGAP-VVLNMLSNYR 296
F + G + ++ LIR + P +LN++
Sbjct: 148 FTGGLGIHYG----AERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMV 203
Query: 297 ----DPDKKPLKLAKPVHLVTAGAPPPAAVLLRT---ESLGFKVSHGYGLTETGGIVVSC 349
DP + LK+ + A A LR +G YGL+E G V+C
Sbjct: 204 RQGMDPAESSLKIG----IFGAEPWTQA---LRNEVETRVGIDALDIYGLSEVMGPGVAC 256
Query: 350 AWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL----RG 405
+ E +++DP +G DGS GE+V +
Sbjct: 257 ECVETKDGPVIWEDHFY-------------PEIIDPVTGEVLP-DGSQ-GELVFTSLTKE 301
Query: 406 GCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDG------YLEIKDRSKDVIISGGEN 459
++ R + T D+ + +I RS D++I G N
Sbjct: 302 AMPVI---------R--------YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVN 344
Query: 460 LSSVEVESVLYSNPAVNEAA--VVARPD-----EFWGETPCAFVSLKEGSKSKPTEKEMI 512
+ ++E ++ + P ++ ++R + E + + +E+
Sbjct: 345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQ 404
Query: 513 EYCRGRLPHYMVPKTVVFMD--ELPKTSTGKIQKFV-LREIA 551
+ + V V + +P T+TGK ++ + R+ A
Sbjct: 405 HRIKTMV---GVSSGVTVLAAGGIPATATGKARRVIDRRQAA 443
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 569 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.5 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.47 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.78 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.75 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.68 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.3 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 92.07 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.99 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 80.42 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 80.04 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-82 Score=662.37 Aligned_cols=514 Identities=25% Similarity=0.373 Sum_probs=408.4
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEEeCC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSIIYNN--------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYE 79 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~--------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~ 79 (569)
....+.+|+.++|+++++.+||++|+++.+ +++||+||.++++++|.+|.+.|+++||+|+|+++|++++++
T Consensus 13 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 92 (549)
T 3g7s_A 13 SLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92 (549)
T ss_dssp CCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 445688999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 80 LHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 80 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
++|||+++|++++|++|.++.+++.+++++++++++|++....+.+........ ...++..+..
T Consensus 93 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------ 156 (549)
T 3g7s_A 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG----VERVFVVGGE------------ 156 (549)
T ss_dssp HHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC----CCEEEEETCS------------
T ss_pred HHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC----CcEEEEeCCC------------
Confidence 999999999999999999999999999999999999999988887777665433 3445544322
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecC
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLP 239 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p 239 (569)
...+.+++..............++|+++|+|||||||.||||.++|+++...+......+++..+|++++..|
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSC
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCc
Confidence 2445555554433322222233489999999999999999999999999999988888899999999999999
Q ss_pred chhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCc
Q 044926 240 MFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPP 319 (569)
Q Consensus 240 l~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~ 319 (569)
++|.+++...+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++..........++++|.+++||++++
T Consensus 230 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 230 MFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVA 309 (549)
T ss_dssp TTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCC
Confidence 99999998878888999999999999999999999999999999999999999887544442233449999999999999
Q ss_pred HHHHHHHHh-----cC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCccc
Q 044926 320 AAVLLRTES-----LG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSA 391 (569)
Q Consensus 320 ~~~~~~~~~-----~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~ 391 (569)
+++.+++.+ ++ +++++.||+||++++++.+... ......++|.|.+++ +++|+|++++.++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~ 378 (549)
T 3g7s_A 310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDGREL 378 (549)
T ss_dssp HHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEE
T ss_pred HHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCCcCC
Confidence 999998874 45 8999999999998877654321 113456889999998 9999998899999
Q ss_pred CCCCCceeEEEEecCcccccccCCccccccccC--CCC--eeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHH
Q 044926 392 KRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT--DDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVES 467 (569)
Q Consensus 392 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~ 467 (569)
+.| +.|||+|+|++++.||+++++.+...|. .+| ||+|||+|++++||.+++.||.||+||++|++|+|.+||+
T Consensus 379 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~ 456 (549)
T 3g7s_A 379 GVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEA 456 (549)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHH
T ss_pred CCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHH
Confidence 988 8999999999999999999999999883 366 9999999999999999999999999999999999999999
Q ss_pred HHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHH
Q 044926 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVL 547 (569)
Q Consensus 468 ~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l 547 (569)
+|.++|+|.+++|++.+++..|+.++++|++.++.....+.++|+++++++|+.|++|..++++++||+|++||++|++|
T Consensus 457 ~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L 536 (549)
T 3g7s_A 457 LLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLL 536 (549)
T ss_dssp HHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC------------
T ss_pred HHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHH
Confidence 99999999999999999998899999999998774334788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC
Q 044926 548 REIAENMGSS 557 (569)
Q Consensus 548 ~~~~~~~~~~ 557 (569)
++++.+..+.
T Consensus 537 ~~~~~~~~~~ 546 (549)
T 3g7s_A 537 REKEAEGHHH 546 (549)
T ss_dssp ----------
T ss_pred HHHhhccccc
Confidence 9988765543
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-81 Score=656.37 Aligned_cols=506 Identities=26% Similarity=0.393 Sum_probs=438.0
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.+|+.++|.++++.+|+++|+++. ++.+||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 589999999999999999999985 589999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++....+.+.+...... ..++.++.... ....+
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------------~~~~~ 159 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD-----VKVMCVDSAPD----------------GCLHF 159 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT-----CEEEESSCCCT----------------TCEET
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC-----ceEEEecCCCC----------------CccCH
Confidence 9999999999999999999999999999887776666543321 23343332110 02344
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc----cCCCCCCCEEEEecCchhhhhh
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS----DWSVPTQPVYLWTLPMFHSNGW 246 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~~~~g~ 246 (569)
+++....... .+.....++|+++|+|||||||.||||.++|+++...+..... .+++..+|++++..|++|.+++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (536)
T 3ni2_A 160 SELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYAL 238 (536)
T ss_dssp HHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHH
T ss_pred HHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHH
Confidence 4544433221 1223356789999999999999999999999999887765543 4568899999999999999998
Q ss_pred hH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHH
Q 044926 247 CF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLR 325 (569)
Q Consensus 247 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~ 325 (569)
.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........++ ++|.+++||+++++++.++
T Consensus 239 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~gGe~l~~~~~~~ 316 (536)
T 3ni2_A 239 NSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS--SLRMIKSGGAPLGKELEDT 316 (536)
T ss_dssp HHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCT--TCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCc--cceEEEECCCCCCHHHHHH
Confidence 65 57778899999999999999999999999999999999999999988765555555 9999999999999999999
Q ss_pred HH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEE
Q 044926 326 TE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVL 403 (569)
Q Consensus 326 ~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 403 (569)
++ .+ ++++++.||+||++++++.+...... .......++|.|.++. +++|+|++++..++.| +.|||++
T Consensus 317 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v 387 (536)
T 3ni2_A 317 VRAKFPQARLGQGYGMTEAGPVLAMCLAFAKE------PFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICI 387 (536)
T ss_dssp HHHHCTTSEEEEEEECGGGSSEEEECGGGSSS------CCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCCccccccccccchhhhcccccCCc------cccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEE
Confidence 98 55 89999999999998777665322110 0112345789999999 9999999899999988 8999999
Q ss_pred ecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEec
Q 044926 404 RGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483 (569)
Q Consensus 404 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 483 (569)
+|+.++.||+++++.+...|..++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus 388 ~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~ 467 (536)
T 3ni2_A 388 RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGL 467 (536)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred eCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEee
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 484 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
+++..|+.++++|+..++.. .+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 468 ~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 468 KDEDAGEVPVAFVVKSEKSQ--ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EETTTEEEEEEEEEECTTCC--CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ecCCCCceeEEEEEecCCCC--CCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99888899999999887765 788999999999999999999999999999999999999999998865
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-81 Score=655.71 Aligned_cols=517 Identities=34% Similarity=0.534 Sum_probs=402.3
Q ss_pred CCCCCCchHHHHHHHHHHcCCCCeEEe----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q 044926 9 ANSTPLTPLVFLERAATVYGDSPSIIY----NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAV 84 (569)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~al~~----~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~ 84 (569)
+...++|+.++|+++++.+|+++|+++ .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||
T Consensus 13 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 345678999999999999999999994 4579999999999999999999999999999999999999999999999
Q ss_pred hhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 85 PFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+++|++++|++|.++.+++.+++++++++++|++.+..+.+......... ...++.++.....
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------- 155 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT---VQHFVVMDEKAPE-------------- 155 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSS---CCEEEESSSCCCT--------------
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCC---ccEEEEecCCCCc--------------
Confidence 99999999999999999999999999999999999887766665543321 2344444332100
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhh--hhccCCCCCCCEEEEecCchh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN--TLSDWSVPTQPVYLWTLPMFH 242 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~--~~~~~~~~~~d~~~~~~pl~~ 242 (569)
....+++++...... ....++++++|+|||||||.||||.++|+++...... ....++++++|++++..|++|
T Consensus 156 -~~~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 156 -GYLAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230 (541)
T ss_dssp -TCEEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTS
T ss_pred -ccccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchh
Confidence 023455554433221 2345689999999999999999999999999876655 334567889999999999999
Q ss_pred hhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHH
Q 044926 243 SNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAA 321 (569)
Q Consensus 243 ~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~ 321 (569)
.+++...+.+++.|+++++.+. +++..+++.++++++|++.++|+++..|++........++ ++|.+++||++++++
T Consensus 231 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~gG~~l~~~ 308 (541)
T 1v25_A 231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLK--TLRRLVVGGSAAPRS 308 (541)
T ss_dssp HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCS--SCCEEEECSSCCCHH
T ss_pred hhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcch--hccEEEECCCCCCHH
Confidence 9999777888999999998864 7999999999999999999999999999876543334444 999999999999999
Q ss_pred HHHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 322 VLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 322 ~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
+.++++.+++++++.||+||++++++.+.....+..++.........++|.|.+++ +++|+|+ ++..++.++++.|||
T Consensus 309 ~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl 386 (541)
T 1v25_A 309 LIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEV 386 (541)
T ss_dssp HHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEE
T ss_pred HHHHHHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEE
Confidence 99999778999999999999988777654333332233232334567899999998 9999997 677777543368999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++||+++.||+++++.+...|..+|||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.+||+|.+++|+
T Consensus 387 ~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv 466 (541)
T 1v25_A 387 QLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466 (541)
T ss_dssp EEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEE
T ss_pred EEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+.+++.+++.++++|+.. +.. .+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++.+.
T Consensus 467 ~~~~~~~~~~~~a~vv~~-~~~--~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 467 AIPHPKWQERPLAVVVPR-GEK--PTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp EEECSSSSEEEEECC----------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EecCCCcCceEEEEEEEC-CCC--CCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 999998889999998876 322 566889999999 8999999999999999999999999999999987654
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-80 Score=645.17 Aligned_cols=503 Identities=24% Similarity=0.334 Sum_probs=429.6
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
+++.|+.++|+++++.+|+++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
++|++|.++.+++.++++.++++++|++++.. ..........+. ...++..++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------- 161 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT---LKNIIVAGEAE----------------- 161 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTT---CCCEEEESCCT-----------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCC---ccEEEEcCCcc-----------------
Confidence 99999999999999999999999999987632 222333322221 34444433211
Q ss_pred ccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhh
Q 044926 166 FFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g 245 (569)
.+.++....... .......++|+++++|||||||.||||.++|+++...+......++++.+|++++..|++|.++
T Consensus 162 ---~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (539)
T 1mdb_A 162 ---EFLPLEDLHTEP-VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYP 237 (539)
T ss_dssp ---TSEEGGGCCCCC-CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred ---chhhhhhccccc-cccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccch
Confidence 011111111111 1112356789999999999999999999999999998888888889999999999999999999
Q ss_pred hhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 246 WCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 246 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
+.. .+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..+++.......+++ ++|.+++||+++++++.
T Consensus 238 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~~~~gG~~l~~~~~ 315 (539)
T 1mdb_A 238 LSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLS--SLQVLQVGGAKFSAEAA 315 (539)
T ss_dssp HHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCT--TCCEEEEESSCCCHHHH
T ss_pred hhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCcc--ceeEEEEcCCCCCHHHH
Confidence 874 77888999999999889999999999999999999999999999876543444555 99999999999999999
Q ss_pred HHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEE
Q 044926 324 LRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIV 402 (569)
Q Consensus 324 ~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 402 (569)
+++. .+++++++.||+||++..+. ... ........++|.|.++..+++|+|+ ++.+++.| +.|||+
T Consensus 316 ~~~~~~~~~~~~~~YG~TE~~~~~~-~~~---------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~ 382 (539)
T 1mdb_A 316 RRVKAVFGCTLQQVFGMAEGLVNYT-RLD---------DPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLL 382 (539)
T ss_dssp TTHHHHTCSEEEEEEECTTSCEEEC-CTT---------SCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEE
T ss_pred HHHHHHhCCcEEEEEcCCCCccccc-CCC---------CcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEE
Confidence 9987 57999999999999643222 110 0111234678999977658999997 78888887 899999
Q ss_pred EecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 403 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
|+||+++.||+++++.+...|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 383 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 462 (539)
T 1mdb_A 383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462 (539)
T ss_dssp EECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred eeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence 99999999999999999999987999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
.+++.+|+.++++|+..+. . .+.++++++++++ |+.|++|+.++++++||+|++||++|++|++++.+..
T Consensus 463 ~~~~~~g~~~~a~vv~~~~-~--~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 463 MPDQFLGERSCVFIIPRDE-A--PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp EEETTTEEEEEEEEEESSS-C--CCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred ccccccCceEEEEEEECCC-C--CCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 9998888889999988742 2 5789999999998 9999999999999999999999999999999887653
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-80 Score=640.54 Aligned_cols=493 Identities=25% Similarity=0.373 Sum_probs=426.3
Q ss_pred HHHHHHHHHcCCCCeEE---eCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeec
Q 044926 18 VFLERAATVYGDSPSII---YNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI 94 (569)
Q Consensus 18 ~~l~~~a~~~p~~~al~---~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (569)
++|.++++.+|++.++. ..++++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 57899999999999988 466899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHhh
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLV 174 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
+|.++.+++.+++++++++++|++.+..+.+........ ..+..+..... ..+.+..
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------------~~~~~~~ 140 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-----ATVETLGPDGR------------------GSLTDAA 140 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-----CEEEECCTTSC------------------SHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-----ceEEEecCCcc------------------cccchhh
Confidence 999999999999999999999999876554444333221 12333322110 1122222
Q ss_pred hcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHHHH
Q 044926 175 AKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWAMA 253 (569)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~~~ 253 (569)
..... ........++|+++|+|||||||.||||.++|+++...+......++++++|++++..|++|.+++.. .+.++
T Consensus 141 ~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l 219 (503)
T 4fuq_A 141 AGASE-AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219 (503)
T ss_dssp HTSCS-CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHH
T ss_pred hcCCC-CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHH
Confidence 11111 11122356789999999999999999999999999999998888899999999999999999999765 66788
Q ss_pred HhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCe
Q 044926 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFK 332 (569)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~ 332 (569)
+.|+++++.+.+++..+++.++ ++|++.++|+++..+++........+. ++|.+++||+++++++.+.+. .++++
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gg~~l~~~~~~~~~~~~~~~ 295 (503)
T 4fuq_A 220 FARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTG--HMRLFISGSAPLLADTHREWSAKTGHA 295 (503)
T ss_dssp HTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTT--TCCEEEECSSCCCHHHHHHHHHHHSCC
T ss_pred HhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchh--hcEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999998 899999999999999998765555555 999999999999999999988 56999
Q ss_pred eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccc
Q 044926 333 VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGY 412 (569)
Q Consensus 333 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy 412 (569)
+++.||+||++..+.... . ......++|.|.+++ +++|+|++++.+++.| +.|||+|+|++++.||
T Consensus 296 ~~~~YG~TE~~~~~~~~~-~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY 361 (503)
T 4fuq_A 296 VLERYGMTETNMNTSNPY-D----------GDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGY 361 (503)
T ss_dssp EEECCEETTTEECBCCCS-S----------SCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCB
T ss_pred ccceEcccccCcccccCC-C----------CCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhh
Confidence 999999999976543221 1 112335789999998 9999998899999988 8999999999999999
Q ss_pred cCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCcee
Q 044926 413 LKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492 (569)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~ 492 (569)
+++++.+...|..++||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.+
T Consensus 362 ~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~ 441 (503)
T 4fuq_A 362 WRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGV 441 (503)
T ss_dssp TTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCcee
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 493 CAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 493 ~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
+++|+..++.. .+.++++++++++|+.|++|..++++++||+|++||++|++|++++.++
T Consensus 442 ~a~v~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 442 TAVVVRDKGAT--IDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEEEECTTCC--CCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEEEeCCCCC--CCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 99999887765 7889999999999999999999999999999999999999999998765
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-79 Score=641.00 Aligned_cols=502 Identities=30% Similarity=0.430 Sum_probs=433.2
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCe--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNI--TYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFA 87 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~--~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 87 (569)
.....|+.++|+++++.+|+++|+++.++ ++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 35778999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred cceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCccc
Q 044926 88 AAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFF 167 (569)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (569)
|++++|++|.++.+++.+++++++++++|++......+.......... ..++.+.. .
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------------~ 148 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPP---GTVTDWIG--------------------A 148 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCC---TTCCEEEE--------------------H
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCc---cEEEEccC--------------------c
Confidence 999999999999999999999999999999998887776665543321 12221111 1
Q ss_pred chhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhh
Q 044926 168 STYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWC 247 (569)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~ 247 (569)
..+.+.+....... ......++|+++|+|||||||.||||.++|+++...+......+++..+|++++..|++|..++.
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 149 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH
T ss_pred ccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH
Confidence 22333333322211 22335678999999999999999999999999999999888889999999999999999999998
Q ss_pred HHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH
Q 044926 248 FPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE 327 (569)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~ 327 (569)
..+..++.|+++++.+.+++..+++.++++++|++.++|+++..+.+........++ ++|.+++||+++++++.+.+.
T Consensus 228 ~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~i~~gGe~l~~~~~~~~~ 305 (517)
T 3r44_A 228 TVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAP--DFRYFITGGAPMPEALIKIYA 305 (517)
T ss_dssp HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCT--TCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCC--cccEEEECCCCCCHHHHHHHH
Confidence 867777799999999999999999999999999999999999999887544444444 899999999999999999998
Q ss_pred hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 328 SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 328 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+.++++++.||+||+++.++..... .......++|.|.++. +++|+|+ ++..++.| .|||+++|+.
T Consensus 306 ~~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~ 371 (517)
T 3r44_A 306 AKNIEVVQGYALTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDI 371 (517)
T ss_dssp HTTCEEEEEEECGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETT
T ss_pred hcCCcEEEeecccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcc
Confidence 7799999999999998776654321 1123456789999988 9999997 67666654 6999999999
Q ss_pred ccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCC
Q 044926 408 IMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEF 487 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 487 (569)
++.||+++++.+...|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++.
T Consensus 372 v~~GY~~~p~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~ 450 (517)
T 3r44_A 372 LLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEK 450 (517)
T ss_dssp SCSEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred hhhhhCCChhhhHhhhc-CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccc
Confidence 99999999999999997 89999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 488 WGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 488 ~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+|+.++++| ..++.. .+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus 451 ~g~~~~a~v-~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 451 WGEIAAAIV-VADQNE--VSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp TEEEEEEEE-EECTTT--CCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred cCceEEEEE-ECCCCC--CCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 888888887 555444 68899999999999999999999999999999999999999999997653
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-80 Score=650.83 Aligned_cols=509 Identities=20% Similarity=0.274 Sum_probs=340.5
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
.+.++|+.++|+++++.+|+++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+++|+++.++.+++.+++++++++++|++.... ............ ...++.......
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------- 167 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLS---PEIILMLNHQAT--------------- 167 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCC---CSEEEEETCCTT---------------
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccC---cceEEEecCCcc---------------
Confidence 999999999999999999999999999987653 333333332221 233443332211
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~ 244 (569)
...+.++...............++++++|+|||||||.||||.++|+++...+......+++.++|++++.+|++|.+
T Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 245 (544)
T 3o83_A 168 --DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNF 245 (544)
T ss_dssp --SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHH
T ss_pred --ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEe
Confidence 022334443333222222345678999999999999999999999999999999988899999999999999999999
Q ss_pred hhhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHH
Q 044926 245 GWCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 245 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........++ ++|.+++||+++++++
T Consensus 246 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~i~~gG~~l~~~~ 323 (544)
T 3o83_A 246 MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQ--SLKLLQVGGASFPESL 323 (544)
T ss_dssp HHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHT--TCCEEEEESSCCCHHH
T ss_pred ecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCC--cceEEEEcCCCCCHHH
Confidence 8864 67888899999999999999999999999999999999999999887655544555 9999999999999999
Q ss_pred HHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 323 LLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 323 ~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
.+++. .+++++++.||+||++..+.... ........++|.|+.+..+++|+|+ ++.+++.| +.|||
T Consensus 324 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl 390 (544)
T 3o83_A 324 ARQVPEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDDEIKIVDE-QYREVPEG--EIGML 390 (544)
T ss_dssp HTHHHHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEE
T ss_pred HHHHHHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCcEEEEECC-CCCCCCCC--CeeEE
Confidence 99998 56999999999999874443221 1112334678999643339999995 78888888 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++||+++.||+++++.+...|..++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 391 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv 470 (544)
T 3o83_A 391 ATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALV 470 (544)
T ss_dssp EEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-------------------------------
T ss_pred EEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
+.+++..|+.++++|+..+. . .+.+++++++++ +|+.|++|..++++++||+|++||++|++|++++.+.+.
T Consensus 471 ~~~~~~~g~~~~a~vv~~~~-~--~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 543 (544)
T 3o83_A 471 AIVDEQFGEKSCAFIVSRNP-E--LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTSTT 543 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred eccCCCCCceEEEEEEeCCC-C--CCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhccC
Confidence 99999889999999987763 2 566789999998 799999999999999999999999999999999876544
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-78 Score=635.87 Aligned_cols=506 Identities=22% Similarity=0.318 Sum_probs=432.9
Q ss_pred CchHH-HHHHHHHHcCCCCeEEe--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 14 LTPLV-FLERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 14 ~tl~~-~l~~~a~~~p~~~al~~--~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
+|+.+ +|.++++.+ +++|+++ .++++||+||.++++++|..|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 58999 899999999 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++.+..+.+.......+. ...++.++..... .....+
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------~~~~~~ 166 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTT---IKTIVILDSKVDY--------------RGYQCL 166 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTT---CCEEEETTCSSCB--------------TTBCBH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCC---CCEEEEeCCcccc--------------cccccH
Confidence 99999999999999999999999999999887766655443321 2344443321100 012345
Q ss_pred hHhhhcCCCC-cccCCCC-----CCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCEEEEecCch
Q 044926 171 ESLVAKGDPE-FEWIRPR-----TEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPVYLWTLPMF 241 (569)
Q Consensus 171 ~~~~~~~~~~-~~~~~~~-----~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~ 241 (569)
++++...... ....... .++++++++|||||||.||+|.++|+++...+...... ++++++|++++..|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 246 (548)
T 2d1s_A 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFH 246 (548)
T ss_dssp HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHH
Confidence 5555443211 1110111 23899999999999999999999999999888777666 6788999999999999
Q ss_pred hhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHH
Q 044926 242 HSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAA 321 (569)
Q Consensus 242 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~ 321 (569)
|.+++...+...+.|+++++.+.+++..+++.|+++++|+++++|+++..|.+........++ ++|.+++||++++++
T Consensus 247 h~~g~~~~~~~~l~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~gG~~l~~~ 324 (548)
T 2d1s_A 247 HGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLS--NLVEIASGGAPLSKE 324 (548)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCT--TCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccccc--ceeEEEEcCccCCHH
Confidence 999987744444499999998889999999999999999999999999999987654444444 999999999999999
Q ss_pred HHHHHH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCcee
Q 044926 322 VLLRTE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLG 399 (569)
Q Consensus 322 ~~~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~G 399 (569)
+.+++. .+ ++.+++.||+||+++.++.+... .....++|.|.++. +++|+|++++..++.| +.|
T Consensus 325 ~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~G 390 (548)
T 2d1s_A 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRG 390 (548)
T ss_dssp HHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCE
T ss_pred HHHHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCe
Confidence 999998 55 68899999999998776653211 12345789999998 9999998789999887 899
Q ss_pred EEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 400 EIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 400 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
||+++|++++.||+++++.+...|..+|||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.+||+|.+++
T Consensus 391 El~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 470 (548)
T 2d1s_A 391 EVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470 (548)
T ss_dssp EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEE
T ss_pred EEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEE
Confidence 99999999999999999999999977999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCcccc-EEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPK-TVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 480 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
|++.+++.+|+.++++|++.++.. .+.++|+++++++|+.+++|. .++++++||+|++||++|++|++++.+..
T Consensus 471 V~~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 471 VAGVPDPVAGELPGAVVVLESGKN--MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCC--CCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred EEEEEcCCCCeeeEEEEEEcCCCC--CCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 999999888888999999877654 678999999999999999999 99999999999999999999999987643
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-80 Score=649.24 Aligned_cols=513 Identities=23% Similarity=0.322 Sum_probs=339.4
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEE---e--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSII---Y--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHF 82 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~---~--~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 82 (569)
..+.++.|+.++|.++++++|+++|++ + .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 14 FYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp SSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred CCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 345678899999999999999999976 3 45799999999999999999999999999999999999999999999
Q ss_pred HhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCC
Q 044926 83 AVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNIS 162 (569)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (569)
||+++|++++|++|.++.+++.++++.++++++|++.+..+.+......... ...++.++.....
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------ 158 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPI---IQKIIIMDSKTDY------------ 158 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTT---CCEEEETTCSSCB------------
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCC---cceEEEEcCCccc------------
Confidence 9999999999999999999999999999999999999988877776655443 3445544332110
Q ss_pred CCcccchhhHhhhcCCCC------cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CCCCCCCE
Q 044926 163 DDQFFSTYESLVAKGDPE------FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WSVPTQPV 233 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~~~~~d~ 233 (569)
.....+.+++...... ..+.....++++++|+|||||||.||+|.++|+++...+...... +++.++|+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~ 236 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence 0123444444322211 111122345789999999999999999999999998877766654 57889999
Q ss_pred EEEecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 234 YLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 234 ~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
+++..|++|.+++...+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..+++.......+++ ++|.+++
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~i~~ 314 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS--NLHEIAS 314 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCT--TCCEEEE
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcc--cccEEEE
Confidence 99999999999998888899999999999999999999999999999999999999999988655555555 9999999
Q ss_pred eCCCCcHHHHHHHH-hcCCe-eeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCccc
Q 044926 314 AGAPPPAAVLLRTE-SLGFK-VSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSA 391 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~ 391 (569)
||+++++++.+++. .++.. +++.||+||+++.++.+... .....++|.|.+++ +++|+|++++..+
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~ 382 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTL 382 (550)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBC
T ss_pred ecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCC
Confidence 99999999999998 56765 99999999998777654322 12345789999998 9999999899999
Q ss_pred CCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHc
Q 044926 392 KRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYS 471 (569)
Q Consensus 392 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~ 471 (569)
+.| +.|||+|+|++++.||+++++.+...|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+
T Consensus 383 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 383 GVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------
T ss_pred CCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 988 899999999999999999999999999779999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCcc-ccEEEEecccCCCCCCcccHHHHHHH
Q 044926 472 NPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMV-PKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 472 ~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~-p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
+|+|.+++|++.+++.+|+.++++|+..++.. .+.++++++++++++.++. |..++++++||+|++||++|++|+++
T Consensus 461 ~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT--MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEeecCCCCceEEEEEEecCCCC--CCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHH
Confidence 99999999999999988999999999887755 6778999999999988865 45799999999999999999999999
Q ss_pred HHhcC
Q 044926 551 AENMG 555 (569)
Q Consensus 551 ~~~~~ 555 (569)
+.+..
T Consensus 539 ~~~~~ 543 (550)
T 3rix_A 539 LIKAK 543 (550)
T ss_dssp -----
T ss_pred HHhhc
Confidence 87654
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-80 Score=642.13 Aligned_cols=500 Identities=25% Similarity=0.383 Sum_probs=334.9
Q ss_pred CCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 9 ANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
+.++++|+.++|+++++.+||++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 1 ms~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 80 (509)
T 3ivr_A 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIG 80 (509)
T ss_dssp -CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred CCCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccc
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFS 168 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (569)
++++|++|.++.+++.+++++++++++|++.+....+......... ...++.+++.. .
T Consensus 81 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------------------~ 138 (509)
T 3ivr_A 81 AILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG---VKKAYAIGDGS-------------------G 138 (509)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSS---CCEEEESSCCC-------------------S
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCC---ceEEEEcCCCC-------------------c
Confidence 9999999999999999999999999999999887765555443332 34444444321 1
Q ss_pred hhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH
Q 044926 169 TYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF 248 (569)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~ 248 (569)
.+.++...............++|+++|+|||||||.||+|.++|+++...+......++++++|++++..|++|.+++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~ 218 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL 218 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH
Confidence 11222221111111223456789999999999999999999999999999998888999999999999999999999988
Q ss_pred HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-
Q 044926 249 PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE- 327 (569)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~- 327 (569)
.+..++.|++.++...+++..+++.++++++|++.++|+++..+++.. ....+. ++|.++.+|++ ...+++.
T Consensus 219 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~--~lr~~~~~g~~---~~~~~~~~ 291 (509)
T 3ivr_A 219 MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLA--SLRAVTGLDTP---ETIERFEA 291 (509)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGT--TCCEEEEECCH---HHHHHHHH
T ss_pred HHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchh--hhheecccCCh---HHHHHHHH
Confidence 888888888888888899999999999999999999999999998875 233344 89999999987 6666666
Q ss_pred hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 328 SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 328 ~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
.+ ++++++.||+||++++++.+.... ....+|.|.++. +++|+|+ ++.+++.| +.|||+|+|+
T Consensus 292 ~~~~~~~~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~ 355 (509)
T 3ivr_A 292 TCPNATFWATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGP 355 (509)
T ss_dssp HCTTCEEEEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEEST
T ss_pred hcCCCeEEcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecC
Confidence 45 899999999999987776543221 123489999998 9999997 58888888 8999999999
Q ss_pred cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccC--CCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecC
Q 044926 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS--KDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~--~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 484 (569)
+++.||+++++.+...|. ++||+|||+|++++||++++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 356 ~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~ 434 (509)
T 3ivr_A 356 TVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVP 434 (509)
T ss_dssp TSCCEETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC-------------------------------------
T ss_pred CccccccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecc
Confidence 999999999999999998 899999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCC
Q 044926 485 DEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGS 556 (569)
Q Consensus 485 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 556 (569)
++.+++.++++|+..++.. .+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+...
T Consensus 435 ~~~~~~~~~a~v~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 435 DPQWSEAIKAVCVCKPGES--IAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccCcEEEEEEEeCCCCC--CCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 9988899999999887655 677899999999999999999999999999999999999999999987654
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-78 Score=626.62 Aligned_cols=485 Identities=26% Similarity=0.355 Sum_probs=411.4
Q ss_pred CchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 14 LTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
+|+.++|+++++.+||++|+++. ++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999988 8899999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEE--ccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccch
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFV--DFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFST 169 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (569)
+|++|.++.+++.+++++++++++|+ +.+..+.+.. ... ...++.+
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~----~~~~~~~------------------------- 129 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGS----GARIIFL------------------------- 129 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCC----CCEEEEG-------------------------
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccc----cceeEEe-------------------------
Confidence 99999999999999999999999999 7665443311 111 0112211
Q ss_pred hhHhhhcC-----CCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCC--CCCCEEEEecCchh
Q 044926 170 YESLVAKG-----DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSV--PTQPVYLWTLPMFH 242 (569)
Q Consensus 170 ~~~~~~~~-----~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~--~~~d~~~~~~pl~~ 242 (569)
.+++... .... ......++++++|+|||||||.||||.++|+++...+......+++ +.+|++++..|++|
T Consensus 130 -~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 207 (504)
T 1t5h_X 130 -GDLVRDGEPYSYGPPI-EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYH 207 (504)
T ss_dssp -GGTEETTEECCCSCCC-CCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTS
T ss_pred -cchhhcCcccccCCcc-CCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhh
Confidence 1111110 0000 1123457899999999999999999999999999888887777888 88999999999999
Q ss_pred hhhhh-HHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHH
Q 044926 243 SNGWC-FPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAA 321 (569)
Q Consensus 243 ~~g~~-~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~ 321 (569)
.+++. ..+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++..........+.++|.+++||++++++
T Consensus 208 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~ 287 (504)
T 1t5h_X 208 VVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDA 287 (504)
T ss_dssp HHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHH
T ss_pred cchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHH
Confidence 99984 47788899999999999999999999999999999999999999987653211222234999999999999999
Q ss_pred HHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCC--cccCCCCCce
Q 044926 322 VLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSG--VSAKRDGSTL 398 (569)
Q Consensus 322 ~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~--~~~~~~~~~~ 398 (569)
+.+++. .+++.+++.||+||++ ...... ......+|.|.++. +++|+|.+.+ ..++.| +.
T Consensus 288 ~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~ 350 (504)
T 1t5h_X 288 VLETVHQHLPGEKVNIYGTTEAM-NSLYMR-------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EE 350 (504)
T ss_dssp HHHHHHHHCCSEEEEEEEETTTE-EEEEEE-------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CC
T ss_pred HHHHHHHhcCcceeeeecccccc-cccccc-------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--Cc
Confidence 999998 5699999999999983 222111 11234678888888 9999997442 677777 89
Q ss_pred eEEEEe-cCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcce
Q 044926 399 GEIVLR-GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNE 477 (569)
Q Consensus 399 Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~ 477 (569)
|||+++ |+.++.||+++++.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||+|.+
T Consensus 351 GEl~v~gg~~~~~GY~~~~~~t~~~f~-~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 429 (504)
T 1t5h_X 351 GELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTE 429 (504)
T ss_dssp EEEEEECCTTSCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEE
T ss_pred ceEEEeCCceeeceecCCchhhhhhhc-CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcce
Confidence 999999 99999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHH
Q 044926 478 AAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 478 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~ 552 (569)
++|++.+++.+|+.++++|++.++.. .+.+++++++++ +|+.|++|+.++++++||+|++||++|++|+++++
T Consensus 430 a~Vv~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 430 VVVIGLADQRWGQSVTACVVPRLGET--LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEEEECSSSSEEEEEEEEECTTCC--CCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEEEeecCCCCcEEEEEEEecCCcC--cCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 99999999988999999999887654 678999999998 99999999999999999999999999999999873
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-78 Score=627.66 Aligned_cols=499 Identities=19% Similarity=0.198 Sum_probs=420.6
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
||+.++|+++++.+|+++|+++.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++.++.+++.++++.++++++|++..... .. ... ..... ..+.++
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~----------~~--~~~-~~~~~---------------------~~~~~~ 126 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTV----------TD--LPV-RIVSE---------------------DNLKDI 126 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCS----------SC--CSS-EEEET---------------------HHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCcccc----------cc--ccc-ceech---------------------hhhhhh
Confidence 999999999999999999999999754210 00 111 11111 112222
Q ss_pred hhcC-CCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 174 VAKG-DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
.... ...........++|+++++|||||||.||+|.++|+++...+......+++..+|++++..|++|..++...+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 206 (512)
T 3fce_A 127 FFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPS 206 (512)
T ss_dssp HHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHH
T ss_pred cccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHH
Confidence 1111 111112233567899999999999999999999999999999888888999999999999999999999888899
Q ss_pred HHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 253 AAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 253 ~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
++.|+++++.+. +++..+++.++++++|++.++|+++..++.........++ ++|.+++||+++++++.+++. .
T Consensus 207 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~~G~~l~~~~~~~~~~~ 284 (512)
T 3fce_A 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLP--NMKTFLFCGEVLPNEVARKLIER 284 (512)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTST--TCCEEEECSSCCCHHHHHHHHHH
T ss_pred HhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCc--cccEEEEecCcCCHHHHHHHHHH
Confidence 999999999876 7899999999999999999999999999887765555555 999999999999999999998 5
Q ss_pred c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++++++.||+||+++.++...... .........++|.|.+++ +++|+|+ +|..++.| +.|||+++||+
T Consensus 285 ~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~ 354 (512)
T 3fce_A 285 FPKATIMNTYGPTEATVAVTGIHVTE------EVLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPS 354 (512)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEECCH------HHHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTT
T ss_pred CCCCEEEeCcccChhhhheeeEEecc------ccccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccc
Confidence 5 899999999999987766543211 111223445789999998 9999996 78888887 89999999999
Q ss_pred ccccccCCcccccccc---CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecC
Q 044926 408 IMLGYLKDPIGTRKCM---TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 484 (569)
++.||+++++.+...| ++++||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 355 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 433 (512)
T 3fce_A 355 VSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIK 433 (512)
T ss_dssp SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEE
T ss_pred cChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEe
Confidence 9999999999998887 34679999999999 7999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEecCCCCCC--CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCCCC
Q 044926 485 DEFWGETPCAFVSLKEGSKSK--PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSSSS 559 (569)
Q Consensus 485 ~~~~~~~~~~~v~~~~~~~~~--~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~~ 559 (569)
++..++.++++|+..++.... ...++++++++++|+.|++|..++++++||+|++||++|++|++.+.+.....+
T Consensus 434 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 434 KGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp ETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred cCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 887788889999887654311 123679999999999999999999999999999999999999999998876543
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-77 Score=621.61 Aligned_cols=496 Identities=18% Similarity=0.214 Sum_probs=426.1
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
||+.++|+++|+.+|+++|+++.++++||+||.++++++|.+|.+. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999985 888999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|+++.++.+++.+++++++++++|++..... .... ..+ ....+.+
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~-----~~~------------------------~~~~~~~ 125 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVG-----QQI------------------------QTVSAEE 125 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCC-----CSS------------------------CEEEHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccc------hhcc-----ccc------------------------ceecHhh
Confidence 9999999999999999999999999754210 0000 000 0123344
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
+...............++++++|+|||||||.||+|.++|+++...+.+....+++..+|++++..|++|..++...+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 205 (511)
T 3e7w_A 126 LLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPC 205 (511)
T ss_dssp HHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHH
T ss_pred hhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHH
Confidence 44333222222233567899999999999999999999999999999988888999999999999999999998888889
Q ss_pred HHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 253 AAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 253 ~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
++.|+++++.+. +++..+++.++++++|++.++|+++..+++........++ ++|.+++||+++++++.+++. .
T Consensus 206 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~l~~~~~~G~~l~~~~~~~~~~~ 283 (511)
T 3e7w_A 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLP--HADTFMFCGEVLPVSVAKALLER 283 (511)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCT--TCCEEEECSSCCCHHHHHHHHHH
T ss_pred HhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCC--cccEEEEecCCCCHHHHHHHHHH
Confidence 999999998876 6899999999999999999999999999988765555555 999999999999999999998 4
Q ss_pred c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++++++.||+||+++.++.+.... .........++|.|.+++ +++|+|+ +|.+++.| +.|||+|+||+
T Consensus 284 ~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~ 353 (511)
T 3e7w_A 284 FPKAKIFNTYGPTEATVAVTSVEITN------DVISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPS 353 (511)
T ss_dssp CTTCEEEECCCCGGGSSCSEEEEECH------HHHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTT
T ss_pred CCCcEEEeCcccchheeeeeEEeccc------cccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCc
Confidence 5 899999999999987776543221 111122345689999998 9999997 68888888 89999999999
Q ss_pred ccccccCCccccccccC-CCC--eeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecC
Q 044926 408 IMLGYLKDPIGTRKCMT-DDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARP 484 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~-~~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 484 (569)
++.||+++++.+...|. .++ ||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 354 v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 432 (511)
T 3e7w_A 354 VSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQ 432 (511)
T ss_dssp SCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEC
T ss_pred cChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEc
Confidence 99999999999998883 123 7999999999 5999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCCCC--CHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCC
Q 044926 485 DEFWGETPCAFVSLKEGSKSKP--TEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSS 557 (569)
Q Consensus 485 ~~~~~~~~~~~v~~~~~~~~~~--~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~ 557 (569)
++..++.++++|+..++..... ..++++++++++|+.|++|..++++++||+|++||++|++|++.+.+....
T Consensus 433 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 507 (511)
T 3e7w_A 433 PNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH 507 (511)
T ss_dssp SSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTC
T ss_pred CCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccc
Confidence 8888889999999877654111 136799999999999999999999999999999999999999999876543
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-77 Score=629.45 Aligned_cols=505 Identities=21% Similarity=0.273 Sum_probs=408.7
Q ss_pred CCchH-HHHHHHHHHcCCCCeEEeC-----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 13 PLTPL-VFLERAATVYGDSPSIIYN-----NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 13 ~~tl~-~~l~~~a~~~p~~~al~~~-----~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
..++. ++|+++|+.+||++|+++. ++.+||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 34555 9999999999999999972 36899999999999999999999999999999999999999999999999
Q ss_pred ccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccH--HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR--ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
+|++++|+++.++.+++.+++++++++++|++.+.. ..+.+........ ...++.++.....
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------- 197 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDI--PLKKAKVGGDVLE-------------- 197 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSC--CCEEEEESSSCCT--------------
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCc--ceEEEEeCCcccc--------------
Confidence 999999999999999999999999999999987754 5555554433221 1334444332110
Q ss_pred cccchhhHhhhcCCCCcccC---CCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCch
Q 044926 165 QFFSTYESLVAKGDPEFEWI---RPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
....+.+.+.......... ....++|+++|+|||||||.||+|.++|.+++..+......+++..++++++..|+.
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (580)
T 3etc_A 198 -GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSG 276 (580)
T ss_dssp -TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTT
T ss_pred -ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChH
Confidence 0245555554443322211 235678999999999999999999999999888777766677889999999999999
Q ss_pred hhhhhhH-HHHHHHhCceEEEe--ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCC
Q 044926 242 HSNGWCF-PWAMAAVGGTNICI--RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPP 318 (569)
Q Consensus 242 ~~~g~~~-~~~~~~~g~~~~~~--~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l 318 (569)
|..+... .+.+++.|+++++. ..+++..+++.|+++++|++.++|+++..|.+.. ....+++ ++|.+++||+++
T Consensus 277 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~--~lr~i~~gGe~l 353 (580)
T 3etc_A 277 WGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFS--TLKYAVVAGEPL 353 (580)
T ss_dssp STHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCT--TCCEEEECSSCC
T ss_pred HHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCc--cceEEEEccCCC
Confidence 9887765 56777888888877 4689999999999999999999999999998863 2333444 999999999999
Q ss_pred cHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCc
Q 044926 319 PAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST 397 (569)
Q Consensus 319 ~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~ 397 (569)
++++.+++. .+++++++.||+||++..+...... .....++|.|.+++ +++|+|+ +|.+++.| +
T Consensus 354 ~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~ 418 (580)
T 3etc_A 354 NPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--E 418 (580)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECT-TSCBCCTT--C
T ss_pred CHHHHHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECC-CCCCCCCC--C
Confidence 999999998 5699999999999997766544321 12345789999999 9999998 68888888 8
Q ss_pred eeEEEEec-----CcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 398 LGEIVLRG-----GCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 398 ~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
.|||+++| +.++.||+++++.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||.+|.++
T Consensus 419 ~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~ 497 (580)
T 3etc_A 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQH 497 (580)
T ss_dssp CEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTS
T ss_pred ceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 99999997 7899999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCCCCCceeEEEEEecCCCCC-CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSKS-KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 473 ~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
|+|.+++|++.+++..|+.++++|++.++... +...++|+++++++|+.|++|..++++++||+|++||++|++|++++
T Consensus 498 p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~ 577 (580)
T 3etc_A 498 PAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKD 577 (580)
T ss_dssp TTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC------------------
T ss_pred CCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHh
Confidence 99999999999999889999999999877541 12347899999999999999999999999999999999999999987
Q ss_pred Hh
Q 044926 552 EN 553 (569)
Q Consensus 552 ~~ 553 (569)
.+
T Consensus 578 ~~ 579 (580)
T 3etc_A 578 QS 579 (580)
T ss_dssp --
T ss_pred hc
Confidence 64
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-76 Score=630.80 Aligned_cols=505 Identities=23% Similarity=0.325 Sum_probs=430.7
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
-++.+|+.++|++++. ||++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 4678999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEccccH-----HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCC
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR-----ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDD 164 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (569)
++||++|..+.+++.++++++++++++++.... ............ ...+........
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------- 162 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSS---IRVVQLLNDSGE--------------- 162 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTT---CCEEEEETCCST---------------
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCc---cceeeecccccc---------------
Confidence 999999999999999999999999999987653 223333222221 233333332211
Q ss_pred cccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhh
Q 044926 165 QFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~ 244 (569)
..+.+......... ...+..++++++|+|||||||.||||.++|+++...+......+++..+|++++..|++|.+
T Consensus 163 ---~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 238 (617)
T 3rg2_A 163 ---HNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238 (617)
T ss_dssp ---TBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred ---cchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhh
Confidence 22333333222211 12335678999999999999999999999999999998888889999999999999999998
Q ss_pred hhhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHH
Q 044926 245 GWCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAV 322 (569)
Q Consensus 245 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~ 322 (569)
++.. .+.+++.|+++++.+..++..+++.++++++|++.++|+++..+++..........+.++|.+++||+++++++
T Consensus 239 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 318 (617)
T 3rg2_A 239 AMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATL 318 (617)
T ss_dssp HHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHH
T ss_pred hhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHH
Confidence 8764 78889999999999889999999999999999999999999998876433333222339999999999999999
Q ss_pred HHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 323 LLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 323 ~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
.+++. .+++++++.||+||++..+.... .........+|.|..+...+.|+|+ ++.+++.| +.|||
T Consensus 319 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~GEl 385 (617)
T 3rg2_A 319 AARIPAEIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRL 385 (617)
T ss_dssp HHHHHHHTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEE
T ss_pred HHHHHHHhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCceEEEECC-CCCCCCCC--CceEE
Confidence 99987 56999999999999875443221 1112234578888755559999996 78889988 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+|+|+.+++||+++++.+...|..++||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 386 ~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv 465 (617)
T 3rg2_A 386 MTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV 465 (617)
T ss_dssp EEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEE
T ss_pred EecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhc-cCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRG-RLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+.+++..++.++++++..+. .+.+++++++++ .|+.|++|..++++++||+|++||++|++|++.+.+..
T Consensus 466 ~~~~~~~~~~~~a~vv~~~~----~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 466 SMEDELMGEKSCAYLVVKEP----LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEETTTEEEEEEEEEESSC----CCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred eccCcccCeeEEEEEEeCCC----CCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 99988888889999988763 578899999998 69999999999999999999999999999999887653
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-76 Score=633.36 Aligned_cols=516 Identities=22% Similarity=0.304 Sum_probs=427.4
Q ss_pred chHHHHHHHHHHcCCCCeEEe------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcc
Q 044926 15 TPLVFLERAATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAA 88 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 88 (569)
++.++|+++++.+||++|+++ .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 578899999999999999997 23789999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccCCCCHHHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCC
Q 044926 89 AVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHP 159 (569)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (569)
++++|+++.++.+++.+++++++++++|+++.. ...+.+....... .....++++.......
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~-------- 227 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNV-TSVEHVIVLKRTGSDI-------- 227 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTC-CSCCEEEEECSSCCCC--------
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCc-CCCCEEEEEeCCCCcc--------
Confidence 999999999999999999999999999998753 2334444432210 1134566554322100
Q ss_pred CCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHh-hhhccCCCCCCCEEEEec
Q 044926 160 NISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV-NTLSDWSVPTQPVYLWTL 238 (569)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~~~ 238 (569)
..... ....+.+++....... ......++|+++|+|||||||.||||+++|++++.... .....+++.++|++++..
T Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~ 305 (652)
T 1pg4_A 228 DWQEG-RDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 305 (652)
T ss_dssp CCCBT-TEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred cccCC-CceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEcc
Confidence 00000 1235666665433211 12234578999999999999999999999999876653 445568899999999999
Q ss_pred Cchhhhhhh-HHHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEE
Q 044926 239 PMFHSNGWC-FPWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313 (569)
Q Consensus 239 pl~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~ 313 (569)
|++|..++. ..+.+++.|+++++.+. +++..+++.++++++|+++++|+++..|++..........++++|.+++
T Consensus 306 ~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~ 385 (652)
T 1pg4_A 306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGS 385 (652)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEE
T ss_pred CCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEE
Confidence 999999984 47788999999999864 5899999999999999999999999999987543222233449999999
Q ss_pred eCCCCcHHHHHHHH-hcC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCc
Q 044926 314 AGAPPPAAVLLRTE-SLG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGV 389 (569)
Q Consensus 314 ~g~~l~~~~~~~~~-~~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~ 389 (569)
||+++++++.+++. .++ +++++.||+||+++.++...... ......++|.|.+++ +++|+|+ +|.
T Consensus 386 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~-~g~ 454 (652)
T 1pg4_A 386 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDN-EGH 454 (652)
T ss_dssp ESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECT-TCC
T ss_pred ecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECC-CCC
Confidence 99999999999988 567 89999999999987665432110 112346889999998 9999997 688
Q ss_pred ccCCCCCceeEEEEec--CcccccccCCccccccccC--CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHH
Q 044926 390 SAKRDGSTLGEIVLRG--GCIMLGYLKDPIGTRKCMT--DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465 (569)
Q Consensus 390 ~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~i 465 (569)
+++.| +.|||+++| |++++|||++++.+...+. .+|||+|||+|++++||+++++||.||+||++|++|++.+|
T Consensus 455 ~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 455 PQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp BCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred CcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 88877 899999999 7899999999987766652 37899999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCC-CCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccH
Q 044926 466 ESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK-PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544 (569)
Q Consensus 466 E~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r 544 (569)
|++|.+||+|.+++|++.+++..|+.++++|++.++.... ...++|+++++++|+.|++|+.++++++||+|++||++|
T Consensus 533 E~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R 612 (652)
T 1pg4_A 533 ESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612 (652)
T ss_dssp HHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCH
T ss_pred HHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchH
Confidence 9999999999999999999888889999999998765410 125789999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 044926 545 FVLREIAENM 554 (569)
Q Consensus 545 ~~l~~~~~~~ 554 (569)
++|++++.+.
T Consensus 613 ~~L~~~~~~~ 622 (652)
T 1pg4_A 613 RILRKIAAGD 622 (652)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhCC
Confidence 9999999875
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-76 Score=619.99 Aligned_cols=501 Identities=23% Similarity=0.300 Sum_probs=423.3
Q ss_pred chHHHHHHHHHH-----cCCCCeEEeC-----CeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHH
Q 044926 15 TPLVFLERAATV-----YGDSPSIIYN-----NITYTWSDTHHRCLQLASSLLSI-GISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 15 tl~~~l~~~a~~-----~p~~~al~~~-----~~~~Ty~el~~~v~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
++.++|+++++. +||++|+++. ++.+||+||.++++++|.+|.+. |+++||+|+|+++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 457999999999 9999999973 37899999999999999999999 999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|++++|++|.++.+++.+++++++++++|++.+..+.+.......+. .+.++.++.....
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------- 182 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD------------- 182 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTT---CCEEEEESSSCCT-------------
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCc---eeEEEEecccCcc-------------
Confidence 999999999999999999999999999999999999887776665544332 3345555432100
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHH--HHhhhhccCCCCCCCEEEEecCch
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFI--VAVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~--~~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
....+.+++........ .....++|+++|+|||||||.||||.++|+ ++. ..... ..++++.+|++++..|++
T Consensus 183 --~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~ 257 (570)
T 3c5e_A 183 --GWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTG 257 (570)
T ss_dssp --TSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTT
T ss_pred --ccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchH
Confidence 02345555544332211 123567899999999999999999999999 544 33433 667889999999999999
Q ss_pred hhhhhh-HHHHHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCC
Q 044926 242 HSNGWC-FPWAMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPP 318 (569)
Q Consensus 242 ~~~g~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l 318 (569)
|..++. ..+.++..|+++++.+ .+++..+++.|+++++|+++++|+++..+.+.. ....+++ ++|.+++||+++
T Consensus 258 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~--~lr~i~~gGe~l 334 (570)
T 3c5e_A 258 WILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFP--HLQNCVTVGESL 334 (570)
T ss_dssp SHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCT--TCCEEEEESSCC
T ss_pred HHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccc--cceEEEEcCCcC
Confidence 999987 4677888999998886 689999999999999999999999999999763 2222334 999999999999
Q ss_pred cHHHHHHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCc
Q 044926 319 PAAVLLRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGST 397 (569)
Q Consensus 319 ~~~~~~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~ 397 (569)
++++.+++. .+++++++.||+||++..+...... .....++|.|.+++ +++|+|+ ++.+++.| +
T Consensus 335 ~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~ 399 (570)
T 3c5e_A 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--T 399 (570)
T ss_dssp CHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--C
T ss_pred CHHHHHHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--C
Confidence 999999988 4799999999999998655433211 12345789999998 9999997 68888887 8
Q ss_pred eeEEEEe-----cCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 398 LGEIVLR-----GGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 398 ~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
.|||+++ |++++.||+++++.+...|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++
T Consensus 400 ~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~ 478 (570)
T 3c5e_A 400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEH 478 (570)
T ss_dssp CEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTS
T ss_pred CCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 9999999 99999999999999999997 89999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCCCCCceeEEEEEecCCCCC---CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSKS---KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 473 ~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
|+|.+++|++.+++..|+.++++|++.++... +...++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 479 p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 558 (570)
T 3c5e_A 479 PAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558 (570)
T ss_dssp TTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHH
T ss_pred CCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHH
Confidence 99999999999998888889999998765311 123578999999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 044926 550 IAENMG 555 (569)
Q Consensus 550 ~~~~~~ 555 (569)
.+.+..
T Consensus 559 ~~~~~s 564 (570)
T 3c5e_A 559 KEWKMS 564 (570)
T ss_dssp HHTC--
T ss_pred HHHhhh
Confidence 886554
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-77 Score=620.98 Aligned_cols=497 Identities=24% Similarity=0.340 Sum_probs=392.8
Q ss_pred CchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEee
Q 044926 14 LTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNT 93 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 93 (569)
||+.++|.++++++||++|+++.++++||+||.++++++|.+|++. +||+|+|+++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5788999999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 94 INTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
+++.++.+++.+++++++++++|++.+.......... ... ...+.......... ... .... ........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~--~~~--~~~~---~~~~~~~~ 146 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDD---IEFAGRDITTNGLL--DNT--MGIQ---YDTSNETV 146 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC---------------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-ccc---ceeeeeeccccccc--ccc--cccc---cccchhhc
Confidence 9999999999999999999999998764322110000 000 00000000000000 000 0000 00000111
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMA 253 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~ 253 (569)
...............++|+++++|||||||.||+|.++|+++...+......++++++|++++..|++|.+|+...+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp ---CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred cccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 11111111112235678999999999999999999999999999998888889999999999999999999999888899
Q ss_pred HhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCee
Q 044926 254 AVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKV 333 (569)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i 333 (569)
+.|+++++.+.+++..+++.++++++|++.++|+++..|++....... ++|.+++||+++++++.+++.++++++
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~lr~i~~gG~~l~~~~~~~~~~~~~~~ 301 (501)
T 3ipl_A 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY-----NLQKILLGGAKLSATMIETALQYNLPI 301 (501)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT-----TCCEEEECSSCCCHHHHHHHHHTTCCE
T ss_pred HcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC-----cccEEEEeCCCCCHHHHHHHHHhCCCE
Confidence 999999999999999999999999999999999999999987543321 789999999999999999998889999
Q ss_pred eecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccccccc
Q 044926 334 SHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYL 413 (569)
Q Consensus 334 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~ 413 (569)
++.||+||+++.+..+. .........++|.|.+++ +++|+|++. + +.|||+++|+.+++||+
T Consensus 302 ~~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~~------~--~~GEl~v~g~~~~~gY~ 363 (501)
T 3ipl_A 302 YNSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPNK------E--GHGELMIKGANVMNGYL 363 (501)
T ss_dssp EEEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCCS------S--CCEEEEEESTTSCSCCS
T ss_pred eccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCCC------C--CccEEEEeccchhhhhC
Confidence 99999999987655432 122233456889999998 999999852 2 67999999999999999
Q ss_pred CCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeE
Q 044926 414 KDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPC 493 (569)
Q Consensus 414 ~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~ 493 (569)
++++.+.. |. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++.+|+.++
T Consensus 364 ~~~~~t~~-~~-~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~ 441 (501)
T 3ipl_A 364 YPTDLTGT-FE-NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPK 441 (501)
T ss_dssp BSTTCCCS-EE-TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred cChhhcch-hc-CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEE
Confidence 99998877 65 89999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred EEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 494 AFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 494 ~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
++++.... .+.++|+++++++|+.|++|..++++++||+|++||++|++|++...+
T Consensus 442 a~v~~~~~----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 442 LYFVSESD----ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEEEESSC----CCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred EEEEeCCC----CCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 88886432 678999999999999999999999999999999999999999987654
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-77 Score=624.73 Aligned_cols=481 Identities=21% Similarity=0.242 Sum_probs=408.7
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEe
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLN 92 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 92 (569)
..|+.++|.++++.+|+++|+++.++++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhhH
Q 044926 93 TINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYES 172 (569)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (569)
|++|.++.+++.+++++++++++|++.+...... .... ...+..+..... .
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~----~~~~---~~~~~~~~~~~~---------------------~- 168 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIH----NIQF---NGQVEIFEEDTI---------------------K- 168 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHT----TSCC---CSEEEECCCSTT---------------------T-
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhh----hccc---cCceeeecchhh---------------------c-
Confidence 9999999999999999999999999987654322 1111 112222211100 0
Q ss_pred hhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHH
Q 044926 173 LVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAM 252 (569)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~ 252 (569)
... ......+..++|+++|+|||||||.||||.++|+++...+......++++++|++++..|++|..++...+.+
T Consensus 169 --~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 244 (563)
T 1amu_A 169 --IRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMA 244 (563)
T ss_dssp --TSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHH
T ss_pred --ccc--CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 000 0011123456799999999999999999999999999888888888899999999999999999998878888
Q ss_pred HHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhc
Q 044926 253 AAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESL 329 (569)
Q Consensus 253 ~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~ 329 (569)
++.|+++++.+. +++..+++.++++++|++.++|+++..+... .+. ++|.+++||+++++++.+++.+
T Consensus 245 l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~--~lr~~~~gG~~l~~~~~~~~~~- 315 (563)
T 1amu_A 245 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RIL--SIQTLITAGSATSPSLVNKWKE- 315 (563)
T ss_dssp HTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCC--SCSEEEEESSCCCHHHHHHHTT-
T ss_pred HHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccc--cccEEEEEEecCCHHHHHHHHh-
Confidence 999999998865 6899999999999999999999998877532 233 8999999999999999999876
Q ss_pred CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccc
Q 044926 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIM 409 (569)
Q Consensus 330 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 409 (569)
.+++++.||+||++..++.+...... .....++|.|.++. +++|+|+ ++..++.| +.|||+++|++++
T Consensus 316 ~~~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~ 383 (563)
T 1amu_A 316 KVTYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLA 383 (563)
T ss_dssp TSEEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCC
T ss_pred CCeEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhC
Confidence 48999999999998766654322110 01235789999998 9999996 78888887 8999999999999
Q ss_pred ccccCCccccccccCC------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEec
Q 044926 410 LGYLKDPIGTRKCMTD------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVAR 483 (569)
Q Consensus 410 ~gy~~~~~~~~~~~~~------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 483 (569)
.||+++++.+...|.+ ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus 384 ~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~ 463 (563)
T 1amu_A 384 RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVH 463 (563)
T ss_dssp CEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEE
T ss_pred hhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEe
Confidence 9999999998888742 4599999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 484 PDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 484 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
+++..++.++++|+.... .+.++|+++++++|+.|++|..++++++||+|++||++|++|++..
T Consensus 464 ~~~~~~~~~~a~vv~~~~----~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 464 KDHQEQPYLCAYFVSEKH----IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp ECTTSCEEEEEEEEESSC----CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred ecCCCCeEEEEEEEeCCC----CCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 998888889999887542 5788999999999999999999999999999999999999998754
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-76 Score=617.73 Aligned_cols=499 Identities=20% Similarity=0.230 Sum_probs=409.4
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
+..|+.++|+++++.+|+++|+.+.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|+++.++.+++.++++.++++++|++.+.... ...+..+. ...+.
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~-------------~~~~~~~~---------------------~~~~~ 127 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLT-------------IEGISLVS---------------------LSEIE 127 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSC-------------CTTSEEEE---------------------HHHHH
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccc-------------cccCcccc---------------------hhhhh
Confidence 999999999999999999999999998753211 01111110 01111
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc--CCCCCCCEEEEecCchhhhhhhHH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD--WSVPTQPVYLWTLPMFHSNGWCFP 249 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~--~~~~~~d~~~~~~pl~~~~g~~~~ 249 (569)
.......+ ........++|+++|+|||||||.||+|.++|+++...+.+.... +++...+++++..|++|..++...
T Consensus 128 ~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 206 (521)
T 3l8c_A 128 SAKLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206 (521)
T ss_dssp HHHHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHH
T ss_pred hcccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHH
Confidence 11111111 111223567899999999999999999999999998877766655 678899999999999999998888
Q ss_pred HHHHHhCceEEEeccC---CHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHH
Q 044926 250 WAMAAVGGTNICIRKF---DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRT 326 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~ 326 (569)
+.++..|+++++.+.. ++..+++.+.++++|++.++|+++..+..........++ ++|.+++||+++++++.+++
T Consensus 207 ~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gG~~l~~~~~~~~ 284 (521)
T 3l8c_A 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMP--ALTHFYFDGEELTVSTARKL 284 (521)
T ss_dssp HHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCT--TCCEEEECSSCCCHHHHHHH
T ss_pred HHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCc--cceEEEEecccCCHHHHHHH
Confidence 8889999999888763 899999999999999999999999999887665555555 99999999999999999998
Q ss_pred H-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEe
Q 044926 327 E-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLR 404 (569)
Q Consensus 327 ~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 404 (569)
. .+ ++++++.||+||+++.++.+.... .........++|.|.+++ +++|+|+ +|..++.| +.|||+|+
T Consensus 285 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~ 354 (521)
T 3l8c_A 285 FERFPSAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVT 354 (521)
T ss_dssp HHHCTTCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEE
T ss_pred HHHCCCceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEec
Confidence 7 55 899999999999987766543221 111222345789999998 9999997 68888888 89999999
Q ss_pred cCcccccccCCcccccccc---CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 405 GGCIMLGYLKDPIGTRKCM---TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 405 ~~~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
||+++.||+++++.+...| ..++||+|||+|++++||++++.||.+|+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 355 g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv 434 (521)
T 3l8c_A 355 GPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAV 434 (521)
T ss_dssp STTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEE
T ss_pred ccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEE
Confidence 9999999999999998887 4568999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC-CCceeEEEEEecCCCCCCC-----CHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 482 ARPDEF-WGETPCAFVSLKEGSKSKP-----TEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 482 ~~~~~~-~~~~~~~~v~~~~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
+..++. .++.++++|+..++..... ..++|+++++++|+.|++|..++++++||+|++||++|++|++++.+..
T Consensus 435 ~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 435 PRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp CCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred EeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 887543 3577899999887643111 1578999999999999999999999999999999999999999987765
Q ss_pred CC
Q 044926 556 SS 557 (569)
Q Consensus 556 ~~ 557 (569)
..
T Consensus 515 ~~ 516 (521)
T 3l8c_A 515 GH 516 (521)
T ss_dssp --
T ss_pred cc
Confidence 44
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-76 Score=629.67 Aligned_cols=518 Identities=23% Similarity=0.314 Sum_probs=424.4
Q ss_pred CchHHHHHHHHHHcCCCCeEEe------CCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q 044926 14 LTPLVFLERAATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLL-SIGISRGHVVSVVSPNVPALYELHFAVPF 86 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~------~~~~~Ty~el~~~v~~~A~~L~-~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 86 (569)
.++.++|+++++.+||++|+++ ..+++||+||.++++++|..|+ +.|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 4688999999999999999998 3478999999999999999999 99999999999999999999999999999
Q ss_pred ccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccH---------HHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCC
Q 044926 87 AAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSR---------ALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSH 157 (569)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (569)
+|++++|+++.++.+++.+++++++++++|+++... ..+.+.....+ ....++++.......
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~~~~~~~~~------ 232 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP---GVRHVLVYRKTNNPS------ 232 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT---TCCEEEEECSSCCSS------
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC---CCceEEEEecCCCCc------
Confidence 999999999999999999999999999999987642 23333333222 135566655331100
Q ss_pred CCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHh-hhhccCCCCCCCEEEE
Q 044926 158 HPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV-NTLSDWSVPTQPVYLW 236 (569)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~ 236 (569)
...... ....|.+++...... ....+..++|+++|+|||||||.||||.++|.+++..+. .....+++.++|++++
T Consensus 233 -~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~ 309 (663)
T 1ry2_A 233 -VAFHAP-RDLDWATEKKKYKTY-YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT 309 (663)
T ss_dssp -CCCCSS-SEEEHHHHHTTSCSC-CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEE
T ss_pred -cccCCC-ccccHHHHHhhcCCC-CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 000000 123466665543221 112235678999999999999999999999999876654 3445688999999999
Q ss_pred ecCchhhhhhh-HHHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceE
Q 044926 237 TLPMFHSNGWC-FPWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHL 311 (569)
Q Consensus 237 ~~pl~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~ 311 (569)
..|++|..++. ..+.+++.|+++++.+. +++..+++.|+++++|+++++|+++..|.+..........++++|.+
T Consensus 310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i 389 (663)
T 1ry2_A 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCL 389 (663)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEE
T ss_pred cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEE
Confidence 99999999984 46788999999999864 58999999999999999999999999999876532223334499999
Q ss_pred EEeCCCCcHHHHHHHH-hcC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCC
Q 044926 312 VTAGAPPPAAVLLRTE-SLG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKS 387 (569)
Q Consensus 312 ~~~g~~l~~~~~~~~~-~~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~ 387 (569)
++||+++++++++++. .++ +++++.||+||+++.++.+..... ......++|.|.++. +++|+|+++
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~v~i~d~~~ 460 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNT 460 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSS
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCC--------cccCCCccccCcCCC-eEEEEcCCC
Confidence 9999999999999998 466 899999999999876665421000 012346789999999 999999877
Q ss_pred CcccCC-CCCceeEEEEec--CcccccccCCccccccccC--CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeH
Q 044926 388 GVSAKR-DGSTLGEIVLRG--GCIMLGYLKDPIGTRKCMT--DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSS 462 (569)
Q Consensus 388 ~~~~~~-~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~ 462 (569)
|.+++. | +.|||+++| |++++|||++++.+...+. .+|||+|||+|++++||++++.||.||+||++|++|++
T Consensus 461 g~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~ 538 (663)
T 1ry2_A 461 GEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 538 (663)
T ss_dssp TTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCH
T ss_pred CCcCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCH
Confidence 888876 5 789999999 5899999999988777663 27899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCC-----CC---CCHHHHHHHHhccCCCCccccEEEEeccc
Q 044926 463 VEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSK-----SK---PTEKEMIEYCRGRLPHYMVPKTVVFMDEL 534 (569)
Q Consensus 463 ~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----~~---~~~~~l~~~l~~~l~~~~~p~~~~~~~~i 534 (569)
.+||++|.++|+|.+++|++.+++..|+.++++|++.++.. .+ ...++|+++++++|+.|++|+.|+++++|
T Consensus 539 ~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~l 618 (663)
T 1ry2_A 539 AEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDL 618 (663)
T ss_dssp HHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCC
T ss_pred HHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCC
Confidence 99999999999999999999999888899999999876542 10 22578999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHhc
Q 044926 535 PKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 535 P~t~~GKi~r~~l~~~~~~~ 554 (569)
|+|++||++|++|++++.+.
T Consensus 619 P~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 619 PKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CBCTTSCBCHHHHHHSCC--
T ss_pred CCCCccCchHHHHHHHHcCC
Confidence 99999999999999987664
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-75 Score=613.24 Aligned_cols=498 Identities=24% Similarity=0.289 Sum_probs=410.1
Q ss_pred chHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceEeec
Q 044926 15 TPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTI 94 (569)
Q Consensus 15 tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 94 (569)
++.++|+++++ +|+++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 38899999999 99999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCC-CCEEEEeCCCcccccccCCCCCCCCCcccchhhHh
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP-PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (569)
++.++.+++.+++++++++++|++.+..+.+......... . ..++..+..... ......++++
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~ 167 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH---DGCQLIVSQPRESE-------------PRLAPLFEEL 167 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC------CCEEEEECC-------------------CCCBHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccc---cCceEEEecccccc-------------cccccchhhh
Confidence 9999999999999999999999998877766555432221 2 334433322100 0001245555
Q ss_pred hhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHH-HHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-HHH
Q 044926 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI-FIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-PWA 251 (569)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l-~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~~~ 251 (569)
........ ......++|+++++|||||||.||+|.++|+++ ..........+++.++|++++..|++|.+++.. .+.
T Consensus 168 ~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 246 (529)
T 2v7b_A 168 IDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTF 246 (529)
T ss_dssp HHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHH
T ss_pred hccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHH
Confidence 54322211 122356789999999999999999999999999 666666666778999999999999999999875 566
Q ss_pred HHHhCceEEEe-ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hc
Q 044926 252 MAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL 329 (569)
Q Consensus 252 ~~~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~ 329 (569)
++..|+++++. +.+++..+++.++++++|++.++|+++..+++.......... ++|.+++||+++++++.+++. .+
T Consensus 247 ~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--~lr~~~~gGe~l~~~~~~~~~~~~ 324 (529)
T 2v7b_A 247 PLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADV--AIRICTSAGEALPREIGERFTAHF 324 (529)
T ss_dssp HHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGC--CCCEEEECSSCCCHHHHHHHHHHH
T ss_pred HHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCC--ceEEEEEcCCCCCHHHHHHHHHHh
Confidence 78889998887 568999999999999999999999999999886543332122 899999999999999999998 46
Q ss_pred CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCccc
Q 044926 330 GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIM 409 (569)
Q Consensus 330 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 409 (569)
++++++.||+||+++++..+.... ....++|.|.+++ +++|+|+ +|.+++.| +.|||+|+|++++
T Consensus 325 g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~ 389 (529)
T 2v7b_A 325 GCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAA 389 (529)
T ss_dssp SCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCC
T ss_pred CCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCcc
Confidence 999999999999976665442111 1235789999998 9999996 78888887 8999999999999
Q ss_pred ccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCC
Q 044926 410 LGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489 (569)
Q Consensus 410 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~ 489 (569)
.||+++++.+...|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..+
T Consensus 390 ~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~ 467 (529)
T 2v7b_A 390 VMYWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGL 467 (529)
T ss_dssp CCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTE
T ss_pred cccCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCc
Confidence 999999999999897 8999999999999999999999999999999999999999999999999999999999 55567
Q ss_pred ceeEEEEEecCCCC-CCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 490 ETPCAFVSLKEGSK-SKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 490 ~~~~~~v~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
+.++++|+..++.. .+...++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 468 ~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 468 VKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 78889998876542 1113468999999999999999999999999999999999999986
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-77 Score=631.12 Aligned_cols=484 Identities=22% Similarity=0.283 Sum_probs=319.0
Q ss_pred CCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 12 TPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
...|+.++|+++++++||++|+++.++++||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|++|.++.+++.+++++++++++|++......+ . ....+.+.+...
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~----~~~~~~~~~~~~---------------------- 199 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------T----GTTTLYVEDEAA---------------------- 199 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------C----SSEEEECCC-------------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------c----CCcceeeecccc----------------------
Confidence 9999999999999999999999999987543211 0 011111111000
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHH
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWA 251 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~ 251 (569)
.............++|+++|+|||||||.||||.++|+++...+.. ...++++++|++++..|++|..+....+.
T Consensus 200 ----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 274 (570)
T 4gr5_A 200 ----SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFG 274 (570)
T ss_dssp --------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHH
T ss_pred ----ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHH
Confidence 0000011112356789999999999999999999999999776654 45668899999999999998877777788
Q ss_pred HHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-h
Q 044926 252 MAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-S 328 (569)
Q Consensus 252 ~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~ 328 (569)
+++.|+++++.+ .+++..+++.++++++|++.++|+++..|++... ..+. ++|.+++||++++....+++. .
T Consensus 275 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~--~lr~~~~gG~~l~~~~~~~~~~~ 349 (570)
T 4gr5_A 275 ALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFE--GVRYAITGGEPASVPHVAKARRD 349 (570)
T ss_dssp HHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGT--TCSEEEEESSCCCHHHHHHHHHH
T ss_pred HHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCC--CceEEEEecccCCHHHHHHHHHh
Confidence 899999998886 4789999999999999999999999999987542 2344 899999999999999888887 4
Q ss_pred c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 329 L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 329 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++++++.||+||++++++.+.... ........++|.|.++. +++|+|+ ++.+++.| +.|||+|+|++
T Consensus 350 ~~~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~ 418 (570)
T 4gr5_A 350 HPALRLGNGYGPAESMGFTTHHAVVA-------GDLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAG 418 (570)
T ss_dssp CTTCEEEEEECCGGGCSCSEEEECCG-------GGTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETT
T ss_pred CCCcEEEEeechhhheeeeeeeeecc-------cccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecc
Confidence 4 899999999999987766543221 11112234689999998 9999996 68888887 89999999999
Q ss_pred ccccccCCccccccccCC--------CCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 408 IMLGYLKDPIGTRKCMTD--------DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~~~--------~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
++.||+++++.+...|.. ++||+|||+|++++||++++.||+||+||++|++|+|.+||++|.+||+|.+++
T Consensus 419 v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~ 498 (570)
T 4gr5_A 419 LAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAA 498 (570)
T ss_dssp CCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------
T ss_pred cchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEE
Confidence 999999999999888753 379999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHH
Q 044926 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREI 550 (569)
Q Consensus 480 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~ 550 (569)
|++.+++.+++.++++|+..+... ..+.++|+++|+++|+.|++|..++++++||+|++||++|++|++.
T Consensus 499 Vv~~~~~~~~~~~~a~vv~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 499 VLAQDSRLGDKQLVAYVVAERADA-PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEeeCCCCCeEEEEEEEecCCCC-CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 999998888888999988765421 1567899999999999999999999999999999999999999875
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-75 Score=620.02 Aligned_cols=481 Identities=19% Similarity=0.175 Sum_probs=396.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
..+.|+.++|+++|+++||++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++...... .. ......+.
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~-------~~----~~~~~~~~------------------------- 147 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP-------AN----GLPCVPVR------------------------- 147 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC-------CT----TSCEEEGG-------------------------
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCccccc-------cc----CCceeeec-------------------------
Confidence 9999999999999999999999999976542110 00 00011000
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHH
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~ 250 (569)
.... ...........++++++|+|||||||.||||.++|+++...+.. ...+++.++|+++...|++|..++...+
T Consensus 148 -~~~~--~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 148 -HLPA--APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp -GCCC--CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred -cCCc--CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 0000 00011112245789999999999999999999999999877665 4567889999999999999999998889
Q ss_pred HHHHhCceEEEec--cCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-
Q 044926 251 AMAAVGGTNICIR--KFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE- 327 (569)
Q Consensus 251 ~~~~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~- 327 (569)
.+++.|+++++.+ .+++..+++.++++++|++.++|+++..+.+.. ...+. ++|.+++||+++++...+++.
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~--~lr~v~~gGe~l~~~~~~~~~~ 298 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLG--GLRQLLTGGDILSVPHVRRALL 298 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGT--TCSEEEEESSCCCHHHHHHHHH
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCC--CccEEEEEeCcCCHHHHHHHHH
Confidence 9999999998864 479999999999999999999999999998642 22344 899999999999988888776
Q ss_pred hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecC
Q 044926 328 SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGG 406 (569)
Q Consensus 328 ~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~ 406 (569)
.+ ++++++.||+||++..++.+.... ........++|.|.++. +++|+|++....++.| +.|||+|+|+
T Consensus 299 ~~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~ 368 (620)
T 4dg8_A 299 RHPRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGA 368 (620)
T ss_dssp HCTTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEET
T ss_pred hCCCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEecc
Confidence 44 899999999999987765433221 12223346789999998 9999998555446777 8999999999
Q ss_pred cccccccCCccccccccCCC-------CeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeE
Q 044926 407 CIMLGYLKDPIGTRKCMTDD-------GWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~-------~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 479 (569)
.+++||+++++.+...|..+ +||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus 369 ~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~ 448 (620)
T 4dg8_A 369 GLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCA 448 (620)
T ss_dssp TCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEE
T ss_pred ccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEE
Confidence 99999999999999988643 79999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcC
Q 044926 480 VVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMG 555 (569)
Q Consensus 480 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~ 555 (569)
|++.+++..+. ++++++.... ++++.++++|+.|++|..++++++||+|++||++|++|++.+.+..
T Consensus 449 Vv~~~~~~~~~-lv~~~~~~~~--------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 515 (620)
T 4dg8_A 449 LLVRERNGVKQ-LLCAWTGKAD--------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPL 515 (620)
T ss_dssp EEEEEETTEEE-EEEEEEECTT--------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC
T ss_pred EEEEeCCCceE-EEEEEecChH--------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccccc
Confidence 99988774333 4444443211 2345567789999999999999999999999999999998876544
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-76 Score=659.12 Aligned_cols=517 Identities=25% Similarity=0.377 Sum_probs=345.0
Q ss_pred CCchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 13 PLTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
++|+.++|.++++++||++|+++. ++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 589999999999999999999986 689999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++.+..+.+....... ...++.++...... .......+
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~~~ 203 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-----GVVIVCIDDNESVP-----------IPEGCLRF 203 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-----CCEEEECCCCTTSC-----------CCTTEEEG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-----CceEEEeCCccccc-----------CCcccccH
Confidence 999999999999999999999999999988766655554322 12334333221100 00112344
Q ss_pred hHhhhcCCCC--cccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc----cCCCCCCCEEEEecCchhhh
Q 044926 171 ESLVAKGDPE--FEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS----DWSVPTQPVYLWTLPMFHSN 244 (569)
Q Consensus 171 ~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~~~~ 244 (569)
.++....... ........++|+++|+|||||||.||||.++|+++...+..... .+++.++|++++.+|++|.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 4444333221 11222356789999999999999999999999999887765543 45688999999999999999
Q ss_pred hhhH-HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 245 GWCF-PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 245 g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
++.. .+.++..|+++++.+++++..+++.++++++|++.++|+++..+++.......+++ ++|.+++||+++++++.
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~~~~gg~~l~~~~~ 361 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLS--SIRVVKSGAAPLGKELE 361 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCT--TCCEEEESSCCCCSSHH
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCcc--ceEEEEEcCCCCCHHHH
Confidence 9865 56778899999999999999999999999999999999999999988765555555 99999999999999999
Q ss_pred HHHH-hc-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEE
Q 044926 324 LRTE-SL-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEI 401 (569)
Q Consensus 324 ~~~~-~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel 401 (569)
+++. .+ ++++++.||+||++.+++.+..... ........++|.|.++. +++|+|++++.+++.| +.|||
T Consensus 362 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl 432 (979)
T 3tsy_A 362 DAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEI 432 (979)
T ss_dssp HHHHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEE
T ss_pred HHHHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEE
Confidence 9998 45 8999999999999877665432111 00112345789999998 9999999899999988 89999
Q ss_pred EEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 402 VLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 402 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+|+|+.+++||+++|+.+...|..++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 433 ~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv 512 (979)
T 3tsy_A 433 CIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVV 512 (979)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------
T ss_pred EEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhcCCCC
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENMGSSS 558 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~~~ 558 (569)
+.+++..|+.++++|+..++.. .+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+...+.
T Consensus 513 ~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 587 (979)
T 3tsy_A 513 AMKEEAAGEVPVAFVVKSKDSE--LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSG 587 (979)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EecccCCCcEEEEEEEECCCCC--CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCc
Confidence 9999888889999998877654 67789999999999999999999999999999999999999999998765443
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-75 Score=602.87 Aligned_cols=479 Identities=24% Similarity=0.322 Sum_probs=386.5
Q ss_pred CCCchHHHHHHHHHHcCC-CCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 12 TPLTPLVFLERAATVYGD-SPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~-~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.-+|+.++|.++++.+|+ ++|+++.++++||+||.++++++|.+|. .|++|+++++|++++++++|||+++|++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 346788899999999988 9999999999999999999999999874 3889999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|++|.++.+++.+++++++++++|++.+... ..... ....+.+...
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~----~~~~~~~~~~----------------------- 142 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALG----ALERVDVDVR----------------------- 142 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGT----TSEEEECCTT-----------------------
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhc----cccccccccc-----------------------
Confidence 999999999999999999999999999864210 00000 0111111100
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhH-H
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCF-P 249 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~-~ 249 (569)
...........++|+++|+|||||||.||||.++|+++...+......++++.+|++++..|++|..|+.. .
T Consensus 143 -------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 215 (505)
T 3nyq_A 143 -------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215 (505)
T ss_dssp -------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTT
T ss_pred -------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHH
Confidence 00001112356789999999999999999999999999999998888899999999999999999999865 7
Q ss_pred HHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCC-CCCCcCCCceEEEeCCCCcHHHHHHHH-
Q 044926 250 WAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDK-KPLKLAKPVHLVTAGAPPPAAVLLRTE- 327 (569)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~- 327 (569)
+.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+++...... ....+.++|.+++||+++++.+.+++.
T Consensus 216 ~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~ 294 (505)
T 3nyq_A 216 LGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA 294 (505)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHH
Confidence 8889999999999999999999999 8899999999999999987432211 111233889999999999999999988
Q ss_pred hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCC-CCCceeEEEEecC
Q 044926 328 SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKR-DGSTLGEIVLRGG 406 (569)
Q Consensus 328 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~-~~~~~Gel~v~~~ 406 (569)
.+++++++.||+||++..+...... .....++|.|.+++ +++|+|+ ++.+++. ++++.|||+|+|+
T Consensus 295 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g~ 361 (505)
T 3nyq_A 295 ATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRGP 361 (505)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEEST
T ss_pred hcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEecC
Confidence 5699999999999997655443211 12335789999998 9999997 5676665 2238999999999
Q ss_pred cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccC-CCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCC
Q 044926 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRS-KDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPD 485 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~-~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 485 (569)
.++.||+++++.+...|..++||+|||+|++++||.+++.||. |++||++|++|+|.+||++|.++|+|.+++|++.++
T Consensus 362 ~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~ 441 (505)
T 3nyq_A 362 NLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPD 441 (505)
T ss_dssp TSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEE
T ss_pred chhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeEC
Confidence 9999999999999999988999999999999999999999998 599999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 486 EFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 486 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
+.+|+.++++|+..+... ..+.++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 442 ~~~g~~l~a~vv~~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 442 PDLGERIVAWIVPADPAA-PPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TTTEEEEEEEEEESSTTS-CCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCcEEEEEEEECCCCC-CCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 988999999999876322 267899999999999999999999999999999999999999986
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-74 Score=608.79 Aligned_cols=520 Identities=17% Similarity=0.176 Sum_probs=417.9
Q ss_pred CCCCCchHHHHHHHHHHcCCCCeEEeC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q 044926 10 NSTPLTPLVFLERAATVYGDSPSIIYN----NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVP 85 (569)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~al~~~----~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~ 85 (569)
..+++|+.++|+++|+.+||++|+++. ++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~ 86 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL 86 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 347889999999999999999999874 4799999999999999999999999999999999999999999999999
Q ss_pred hccceEeeccCCC---CHHHHHHHHhhcCCeEEEEccccHHHHHHHH-hcCCCCCCCCCEEEEeCCCcccccccCCCCCC
Q 044926 86 FAAAVLNTINTRL---DARTVSLLLQHCQSKLVFVDFHSRALVREAV-SLFPPDLKPPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 86 ~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
++|++++|++|.. +.+++.++++.++++++|++.+....+.... ..... ...+..+....
T Consensus 87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------------- 150 (590)
T 3kxw_A 87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPK---FLKIPAIALES------------- 150 (590)
T ss_dssp HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCE---ETTEEEEEGGG-------------
T ss_pred HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccc---ccccceeechh-------------
Confidence 9999999999988 4578999999999999999877655432211 11100 11122111110
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCch
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~ 241 (569)
+.... ..........++|+++|+|||||||.||||.++|+++...+......++++++|++++.+|++
T Consensus 151 -----------~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 151 -----------IELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPH 218 (590)
T ss_dssp -----------CCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred -----------ccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCC
Confidence 00000 000111235678999999999999999999999999999999998899999999999999999
Q ss_pred hhhhhhH-HHHHHHhCceEEEeccC----CHHHHHHHHHHhCcceeechhHHHHHHHcCCCCC-CCCCCcCCCceEEEeC
Q 044926 242 HSNGWCF-PWAMAAVGGTNICIRKF----DASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPD-KKPLKLAKPVHLVTAG 315 (569)
Q Consensus 242 ~~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~-~~~~~~~~l~~~~~~g 315 (569)
|.+|+.. .+.+++.|+++++.+++ ++..+++.++++++|++.++|.++..+.+..... .....++++|.+++||
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 9999876 67788899998888764 8999999999999999999999999887753221 1222344999999999
Q ss_pred CCCcHHHHHHHH-hc------CCeeeecccccccccceeecccccccccC---------------cH-HHHhhhhcccCc
Q 044926 316 APPPAAVLLRTE-SL------GFKVSHGYGLTETGGIVVSCAWKRNWNLL---------------PA-AEKAKLKARQGV 372 (569)
Q Consensus 316 ~~l~~~~~~~~~-~~------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~g~ 372 (569)
+++++++.+++. .+ ++++++.||+||++++++.+.....+... .. ........++|.
T Consensus 299 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 378 (590)
T 3kxw_A 299 EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN 378 (590)
T ss_dssp SCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCE
T ss_pred CCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCC
Confidence 999999999887 33 34799999999998877754332111100 00 011123457788
Q ss_pred ccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCC------CC--eeeecceEEEecCCcEE
Q 044926 373 KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD------DG--WFYTGDVGVMHSDGYLE 444 (569)
Q Consensus 373 ~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~dg~l~ 444 (569)
|.++ ++|+|++++.+++.| +.|||+|+||+++.||+++++.+...|.. +| ||+|||+|+++ ||.++
T Consensus 379 p~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~ 452 (590)
T 3kxw_A 379 PIQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452 (590)
T ss_dssp ESSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEE
T ss_pred CCCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEE
Confidence 8775 889999889999888 89999999999999999999999888863 24 99999999999 99999
Q ss_pred EeccCCCeEEeCceeeeHHHHHHHH-HcCCCcc--eeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCC
Q 044926 445 IKDRSKDVIISGGENLSSVEVESVL-YSNPAVN--EAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPH 521 (569)
Q Consensus 445 ~~GR~~~~i~~~G~~v~~~~iE~~l-~~~~~i~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~ 521 (569)
+.||.||+||++|++|+|.+||++| ..+|.|. +++|++.+++. ++.++++++..++.....+.+++.++++++++.
T Consensus 453 ~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~ 531 (590)
T 3kxw_A 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYE 531 (590)
T ss_dssp EEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7889998 79999988775 677888888876643225668899999998874
Q ss_pred -Ccccc-EEEEe--cccCCCCCCcccHHHHHHHHHhcCCCCCcCccc
Q 044926 522 -YMVPK-TVVFM--DELPKTSTGKIQKFVLREIAENMGSSSSPLSRS 564 (569)
Q Consensus 522 -~~~p~-~~~~~--~~iP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~ 564 (569)
+++|. .++++ ++||+|++||++|++|++++.+...+..+.|++
T Consensus 532 ~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~~~~~~~ 578 (590)
T 3kxw_A 532 NHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIVATWQL 578 (590)
T ss_dssp HHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCCSEEEET
T ss_pred HcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCceeeeecc
Confidence 67775 55555 799999999999999999999988776665554
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-73 Score=600.14 Aligned_cols=499 Identities=18% Similarity=0.189 Sum_probs=314.4
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeCC----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYNN----------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~----------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~ 76 (569)
....++++|+.++|+++|+++||++|+++.+ +++||+||.++++++|..|.+.|+ +||+|+|+++|+++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 3444688999999999999999999998743 789999999999999999999999 79999999999999
Q ss_pred HHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccC
Q 044926 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQS 156 (569)
Q Consensus 77 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (569)
+++++|||+++|++++|++|.++.+++.+++++++++++|++++..... .. ......+....
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~---~~~~~~~~~~~-------- 153 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-------EL---PPETKVLDTKN-------- 153 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-------CC---CTTCEEEETTC--------
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-------cc---Cccceeecccc--------
Confidence 9999999999999999999999999999999999999999986543211 00 01111111110
Q ss_pred CCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc--------CCC
Q 044926 157 HHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD--------WSV 228 (569)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~--------~~~ 228 (569)
..+.+.+...... .......++++++|+|||||||.||||.++|+++...+...... +.+
T Consensus 154 -----------~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~ 221 (562)
T 3ite_A 154 -----------QSFIENLSTQDTS-DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL 221 (562)
T ss_dssp -----------HHHHHHHHHSCCS-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred -----------hhhhhhccccccc-ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhccc
Confidence 1222222222111 11223456788999999999999999999999998776654432 457
Q ss_pred CCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCC-HHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCC
Q 044926 229 PTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFD-ASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAK 307 (569)
Q Consensus 229 ~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 307 (569)
...+++++..|++|..++...+.++..|+++++.+.+. +..+++.++++++|++.++|+++..+.... .+++ +
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~--~ 295 (562)
T 3ite_A 222 GGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAP--H 295 (562)
T ss_dssp TTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGST--T
T ss_pred CcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccC--c
Confidence 78899999999999888888888899999988876543 577889999999999999999998875432 2344 8
Q ss_pred CceEEEeCCCCcHHHHHHHHh-cCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCC
Q 044926 308 PVHLVTAGAPPPAAVLLRTES-LGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPK 386 (569)
Q Consensus 308 l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~ 386 (569)
+|.+++||+++++++.+++.+ +++++++.||+||++..+........ ....++|.|.++. +++|+|++
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~ 364 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPG 364 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTT
T ss_pred eEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCC
Confidence 999999999999999999984 58999999999999876665432211 1234689999998 99999998
Q ss_pred CCcccCCCCCceeEEEEecCcccccccCCccccccccCCCC--eeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHH
Q 044926 387 SGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDG--WFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVE 464 (569)
Q Consensus 387 ~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~--~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~ 464 (569)
++..++.| +.|||+|+|+.++.|||++++.+...+. +| ||+|||+|++++||++++.||.||+||++|++|+|.+
T Consensus 365 ~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~e 441 (562)
T 3ite_A 365 SNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGE 441 (562)
T ss_dssp SSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEEEEEECTTSCEEEEEEC---------------
T ss_pred CCCCCCCC--CceEEEEeccccchhhCCCccccccccC-CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHH
Confidence 89989888 8999999999999999999998887665 45 9999999999999999999999999999999999999
Q ss_pred HHHHHHcC-CCcceeEEEecCCCCCCceeEEEEEecCCCCC-----------CCCHHHHHHHHhccCCCCccccEEEEec
Q 044926 465 VESVLYSN-PAVNEAAVVARPDEFWGETPCAFVSLKEGSKS-----------KPTEKEMIEYCRGRLPHYMVPKTVVFMD 532 (569)
Q Consensus 465 iE~~l~~~-~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~l~~~l~~~l~~~~~p~~~~~~~ 532 (569)
||++|.++ +.+.+++|++.+++..++..++.++...+... ....++|+++|+++|+.|++|+.+++++
T Consensus 442 IE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~ 521 (562)
T 3ite_A 442 VSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPIS 521 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEec
Confidence 99999998 77888888888888777766655554433221 1123589999999999999999999999
Q ss_pred ccCCC-CCCcccHHHHHHHHHhcCC
Q 044926 533 ELPKT-STGKIQKFVLREIAENMGS 556 (569)
Q Consensus 533 ~iP~t-~~GKi~r~~l~~~~~~~~~ 556 (569)
+||+| ++||++|++|++++.++..
T Consensus 522 ~lP~t~~~GKi~r~~L~~~~~~~~~ 546 (562)
T 3ite_A 522 FIPLRDTSAKTDAKALEHMFHTLSL 546 (562)
T ss_dssp -------------------------
T ss_pred cCCCCCCCCcchHHHHHHHHhccCH
Confidence 99998 8999999999999987753
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-71 Score=633.31 Aligned_cols=495 Identities=20% Similarity=0.268 Sum_probs=417.2
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Q 044926 4 LKPSPANSTPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 4 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
.|......+..|+.++|.++++++||++|+++.++++||+||+++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 454 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 454 LNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp TSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 34444455668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|+++||++|.++.+++.+++++++++++|++.+...... .... ....+.+.+.
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~---~~~~~~~~~~---------------- 590 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPY---TGTTLFIDDQ---------------- 590 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCC---CSEEEESSCG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCC---CCcEEEeccc----------------
Confidence 9999999999999999999999999999999999876432110 0110 1112221110
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhh
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHS 243 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~ 243 (569)
..+ .. ..........++++++|+|||||||.||||.++|+++.+. .+....++++.+|+++...|++|.
T Consensus 591 ----~~~----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd 659 (1304)
T 2vsq_A 591 ----TRF----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFD 659 (1304)
T ss_dssp ----GGG----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTST
T ss_pred ----ccc----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHH
Confidence 000 00 0011112356789999999999999999999999999865 555667889999999999999999
Q ss_pred hhhhHHHHHHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcH
Q 044926 244 NGWCFPWAMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPA 320 (569)
Q Consensus 244 ~g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~ 320 (569)
.+....+.+++.|+++++.+. .++..+++.|.++++|++.++|+++..+.+.. ...+ .++|.+++|||+++.
T Consensus 660 ~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~--~~lr~~~~gGe~l~~ 734 (1304)
T 2vsq_A 660 AFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWM--KGLRCILFGGERASV 734 (1304)
T ss_dssp HHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHH--HTCSEEEEESSCCCH
T ss_pred HHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcC--CCccEEEEecCCCCH
Confidence 888888999999999999864 68999999999999999999999999998642 1223 389999999999999
Q ss_pred HHHHHHHh-c-CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCce
Q 044926 321 AVLLRTES-L-GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTL 398 (569)
Q Consensus 321 ~~~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~ 398 (569)
...+++.+ + +++++|.||+||++..++.+..... ........+|.|+++. .++|+|+ .+.+++.| +.
T Consensus 735 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~ 803 (1304)
T 2vsq_A 735 PHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AV 803 (1304)
T ss_dssp HHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CC
T ss_pred HHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--Cc
Confidence 99988874 4 5789999999999877665432210 0011235789999998 9999997 68888888 89
Q ss_pred eEEEEecCcccccccCCccccccccC------CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcC
Q 044926 399 GEIVLRGGCIMLGYLKDPIGTRKCMT------DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSN 472 (569)
Q Consensus 399 Gel~v~~~~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~ 472 (569)
|||+|+|+.+++||+++|+.|..+|. +++||+|||+|++++||.++++||.||+||++|++|++.+||.+|.++
T Consensus 804 GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~ 883 (1304)
T 2vsq_A 804 GELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEY 883 (1304)
T ss_dssp EEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHS
T ss_pred eEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhC
Confidence 99999999999999999999988884 245999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHH
Q 044926 473 PAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 552 (569)
Q Consensus 473 ~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~ 552 (569)
|+|.+++|++.+++..+..++++|+.... .+.++++++++++||.|++|..++++++||+|++||++|++|++...
T Consensus 884 p~V~~a~V~~~~~~~~~~~l~a~vv~~~~----~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 884 PGVKDAVVVADRHESGDASINAYLVNRTQ----LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp SSCCEEEEEEECCSSSCCEEEEEEECSSS----SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred CCCceEEEEEEecCCCCEEEEEEEeCCCC----CCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 99999999999888878889999987652 67889999999999999999999999999999999999999976443
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=479.76 Aligned_cols=405 Identities=19% Similarity=0.240 Sum_probs=313.9
Q ss_pred CCCCCCCCchHHHHHHHHHHcCCCCeEEeCC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH
Q 044926 7 SPANSTPLTPLVFLERAATVYGDSPSIIYNN---------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPAL 77 (569)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~---------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~ 77 (569)
...+.+.+|+.++|+++++.+||++|+++.+ +++||+||.++++++|.+|++.|+ +||+|+|+++|++++
T Consensus 17 ~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~ 95 (480)
T 3t5a_A 17 RGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY 95 (480)
T ss_dssp -------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH
T ss_pred ccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH
Confidence 3445688999999999999999999999865 899999999999999999999996 999999999999999
Q ss_pred HHHHHHhhhccceEeeccC---CCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccc
Q 044926 78 YELHFAVPFAAAVLNTINT---RLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSS 154 (569)
Q Consensus 78 ~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (569)
++++|||+++|+++||+++ .++.+++.+++++++++++|++.+....+.+......... ...++.++...
T Consensus 96 ~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------ 168 (480)
T 3t5a_A 96 VVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES-PPSIIEVDLLD------ 168 (480)
T ss_dssp HHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------CCEEEEGGGSC------
T ss_pred HHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccccc-ccceeEecccc------
Confidence 9999999999999999999 7889999999999999999999987766554332211100 11222221110
Q ss_pred cCCCCCCCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCC----
Q 044926 155 QSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPT---- 230 (569)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~---- 230 (569)
.............++++++|+|||||||.||||.++|+++..++......+.+..
T Consensus 169 ---------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~ 227 (480)
T 3t5a_A 169 ---------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIP 227 (480)
T ss_dssp ---------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCC
T ss_pred ---------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCC
Confidence 0000111112356779999999999999999999999999998888877777776
Q ss_pred --CCEEEEecCchhhhhhhH-HHHHHHhCceEEEeccC----CHHHHHHHHHHhCcceeechhHHHHHHHcCC----CCC
Q 044926 231 --QPVYLWTLPMFHSNGWCF-PWAMAAVGGTNICIRKF----DASIIFDLIRRHGVTHMCGAPVVLNMLSNYR----DPD 299 (569)
Q Consensus 231 --~d~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~----~~~ 299 (569)
+|++++.+|++|.+|+.. .+.+++.|+++++.++. ++..+++.++++++| +.++|+++..++... ...
T Consensus 228 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~ 306 (480)
T 3t5a_A 228 PPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMA 306 (480)
T ss_dssp CTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGT
T ss_pred CCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccc
Confidence 999999999999999765 67888899999988753 899999999999999 788898888776532 222
Q ss_pred CCCCCcCCCceEEEeCCCCcHHHHHHHH-hc------CCeeeecccccccccceeeccccccccc--CcHHHH-------
Q 044926 300 KKPLKLAKPVHLVTAGAPPPAAVLLRTE-SL------GFKVSHGYGLTETGGIVVSCAWKRNWNL--LPAAEK------- 363 (569)
Q Consensus 300 ~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~------~~~i~~~YG~tE~~~~~~~~~~~~~~~~--~~~~~~------- 363 (569)
..+++ ++|.+++||+++++++.+++. .+ ++.+++.||+||+++.++.......... +.....
T Consensus 307 ~~~l~--~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 384 (480)
T 3t5a_A 307 GRDLG--NILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKP 384 (480)
T ss_dssp TCCCT--TCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCC
T ss_pred ccchh--hhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceee
Confidence 33444 999999999999999999987 44 2479999999999887776543221100 000000
Q ss_pred -----hhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccC-----------CCC
Q 044926 364 -----AKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMT-----------DDG 427 (569)
Q Consensus 364 -----~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~ 427 (569)
.....++|.|.+ . +++|+|++++..++.| +.|||+|+|++++.||+++++.+...|. .++
T Consensus 385 ~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~ 460 (480)
T 3t5a_A 385 CAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGP 460 (480)
T ss_dssp CCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCC
T ss_pred cCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCC
Confidence 123457899999 6 9999999889999988 8999999999999999999999988884 467
Q ss_pred eeeecceEEEecCCcEEEecc
Q 044926 428 WFYTGDVGVMHSDGYLEIKDR 448 (569)
Q Consensus 428 ~~~TGD~~~~~~dg~l~~~GR 448 (569)
||+|||+|+++ ||+|++.||
T Consensus 461 w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 461 WLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp BEEEEEEEEEE-TTEEEECC-
T ss_pred eeeccceeeEE-CCEEEEeCC
Confidence 99999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-53 Score=418.96 Aligned_cols=316 Identities=18% Similarity=0.156 Sum_probs=264.4
Q ss_pred CCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCCHH
Q 044926 189 EWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDAS 268 (569)
Q Consensus 189 ~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 268 (569)
.+++++|+|||||||.||||.+||+++...+......++++++|++++.+|++|.+|+...+.+++.|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 46899999999999999999999999999999998999999999999999999999999888899999999887542 1
Q ss_pred HHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHHhcCCeeeecccccccccceee
Q 044926 269 IIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVS 348 (569)
Q Consensus 269 ~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 348 (569)
..+..|+++++|++.++|+++..+++.... ...++ ++|.+++||+++++++.++++++++++++.||+||+++.+..
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~--~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVD--RLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGG--GGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCC--cceEEEEcccCCCchheecccccCceEEeccccccccceeec
Confidence 235678899999999999999999987542 23444 999999999999999999999889999999999999877665
Q ss_pred cccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCe
Q 044926 349 CAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGW 428 (569)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 428 (569)
..... .....+|.+.+++ .+.+. +.|||+++|+.. .++|
T Consensus 191 ~~~~~-----------~~~g~~~~~~pgv-~~~~~-------------~~Gel~~~g~~~----------------~~g~ 229 (358)
T 4gs5_A 191 KALNG-----------PEASELYVFLPGI-QYGVD-------------ERGCLHISGAVT----------------NGQT 229 (358)
T ss_dssp EECSS-----------TTCCSCEEECTTC-EEEEC-------------TTSEEEEESGGG----------------TTCC
T ss_pred ccccc-----------cccceeeccCCCe-EEEec-------------CcCceEEecccc----------------cCcc
Confidence 43221 1123455555555 44432 348999887532 2789
Q ss_pred eeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHH---cCCCcceeEEE-ecCCCCCCceeEEEEEecCCCCC
Q 044926 429 FYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY---SNPAVNEAAVV-ARPDEFWGETPCAFVSLKEGSKS 504 (569)
Q Consensus 429 ~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~---~~~~i~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~ 504 (569)
|+|||+|++++|| +++.||.||+||++|++|+|.+||++|. +||+|.+++|+ +.+++.+|+.++++|+.....
T Consensus 230 ~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-- 306 (358)
T 4gs5_A 230 VQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-- 306 (358)
T ss_dssp EEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH--
T ss_pred eecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC--
Confidence 9999999999888 6667999999999999999999998774 58999998876 567777788888888765432
Q ss_pred CCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 505 KPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 505 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
...++|+++++++|+.|++|+.++++++||+|++||++|++|++++++.
T Consensus 307 -~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 307 -ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp -HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred -cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 4668899999999999999999999999999999999999999987654
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=395.67 Aligned_cols=326 Identities=19% Similarity=0.193 Sum_probs=265.3
Q ss_pred CCC-CCceEEEecCCCCCCCceEEEchHHHHHHHhhhh---ccCCCCCCCEEEEecCchhhhhh-hHHHHHHHhCceEEE
Q 044926 187 RTE-WDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL---SDWSVPTQPVYLWTLPMFHSNGW-CFPWAMAAVGGTNIC 261 (569)
Q Consensus 187 ~~~-~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl~~~~g~-~~~~~~~~~g~~~~~ 261 (569)
..+ +++++++|||||||.||+|.++|+++...+.... ..+++.++|++++..|+.|..+. ...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 344 7899999999999999999999999977665553 34588999999999998655544 456777889999998
Q ss_pred eccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeeccccc
Q 044926 262 IRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLT 340 (569)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~t 340 (569)
.+..++..+++.|+++++|++.++|+++..|++..........+.++|.+++||+++++++.++++ .+++++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 888899999999999999999999999999988754444443344999999999999999999998 4599999999999
Q ss_pred ccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCccccc
Q 044926 341 ETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTR 420 (569)
Q Consensus 341 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 420 (569)
|+++.++..... .....+.+.++. .++|+|++++.+++.| +.|||+|+|. +.
T Consensus 242 E~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR 293 (436)
T ss_dssp GGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred hhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence 996553332211 011234455566 9999998899999988 8999999983 23
Q ss_pred cccCCCCeeeecceEEEecCC------c---EEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCce
Q 044926 421 KCMTDDGWFYTGDVGVMHSDG------Y---LEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGET 491 (569)
Q Consensus 421 ~~~~~~~~~~TGD~~~~~~dg------~---l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~ 491 (569)
..+. ++||+|||+|+++++| . +++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.
T Consensus 294 ~~~~-~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~ 372 (436)
T 3qov_A 294 EMMP-LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDE 372 (436)
T ss_dssp CSSC-CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEE
T ss_pred CCce-EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcE
Confidence 3343 8899999999999998 5 6999999999999999999999999999999999999999988777888
Q ss_pred eEEEEEecCCCCCCCC----HHHHHHHHhccCCCC-ccccEEEEec--ccCCCCCCcccHH
Q 044926 492 PCAFVSLKEGSKSKPT----EKEMIEYCRGRLPHY-MVPKTVVFMD--ELPKTSTGKIQKF 545 (569)
Q Consensus 492 ~~~~v~~~~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~~~~~~--~iP~t~~GKi~r~ 545 (569)
++++|++. +.. .+ .+++++.++++++.+ ++|..+.+++ +||+|+ ||++|.
T Consensus 373 l~a~v~~~-~~~--~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 373 MIVEVELS-DLS--TDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEC-TTC--CCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEc-Ccc--ccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 99999988 443 33 578999999999888 8999999998 999999 999885
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=392.84 Aligned_cols=334 Identities=18% Similarity=0.170 Sum_probs=271.2
Q ss_pred CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCc-hhhhhhhHHHHHHHhCceEEEe
Q 044926 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPM-FHSNGWCFPWAMAAVGGTNICI 262 (569)
Q Consensus 187 ~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 262 (569)
..++++++++|||||||.||+|.++|+++......... .+++.++|++++..|+ +|..++...+.++..|++++..
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 45678999999999999999999999998766544333 5788999999999998 5777777778888999999888
Q ss_pred ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccc
Q 044926 263 RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTE 341 (569)
Q Consensus 263 ~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE 341 (569)
+.+++..+++.|+++++|++.++|+++..|++.......+..+.++|.+++||+++++++.++++ .+|+++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 88899999999999999999999999999987654333333234899999999999999999997 56999999999999
Q ss_pred cccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccc
Q 044926 342 TGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 421 (569)
+++.+........ ....+.+.++. .++|+|++++.+++.| +.|||+++|. +..
T Consensus 249 ~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~~ 301 (443)
T 2y4o_A 249 VMGPGVACECVET------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------TKE 301 (443)
T ss_dssp TTEEEEEEECTTT------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SCS
T ss_pred hcCCeEEeccCCC------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------Ccc
Confidence 8543222111100 00123344555 8999998889999987 8999999982 333
Q ss_pred ccCCCCeeeecceEEEecC-CcE-----EEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEE
Q 044926 422 CMTDDGWFYTGDVGVMHSD-GYL-----EIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAF 495 (569)
Q Consensus 422 ~~~~~~~~~TGD~~~~~~d-g~l-----~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~ 495 (569)
.|+ ++||+|||+|+++++ |++ ++.||.+|+||++|++|+|.+||++|.++|+|.++++++.+++..++.++++
T Consensus 302 ~~p-~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~ 380 (443)
T 2y4o_A 302 AMP-VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA 380 (443)
T ss_dssp SSC-CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred cCh-hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence 444 789999999999999 986 8999999999999999999999999999999999999988776667788888
Q ss_pred EEecC--CCC-CCCCHHHHHHHHhccCCCC-ccccEEEEe--cccCCCCCCcccHHHHH
Q 044926 496 VSLKE--GSK-SKPTEKEMIEYCRGRLPHY-MVPKTVVFM--DELPKTSTGKIQKFVLR 548 (569)
Q Consensus 496 v~~~~--~~~-~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~iP~t~~GKi~r~~l~ 548 (569)
|+..+ +.. ...+.++++++|+++|+.+ .+|..+.++ ++||+|++||++|+..+
T Consensus 381 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 381 VELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 88875 321 1134578999999999876 489888888 59999999999997543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=391.39 Aligned_cols=331 Identities=15% Similarity=0.106 Sum_probs=270.4
Q ss_pred CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhh---ccCCCCCCCEEEEecCc-hhhhhhhHHHHHHHhCceEEEe
Q 044926 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL---SDWSVPTQPVYLWTLPM-FHSNGWCFPWAMAAVGGTNICI 262 (569)
Q Consensus 187 ~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 262 (569)
..++++++++|||||||.||+|.++|+++........ ..++++++|++++..|+ +|..++...+.++..|++++..
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4567899999999999999999999999876654433 35788999999999998 6788877778888999999888
Q ss_pred ccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-hcCCeeeecccccc
Q 044926 263 RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE-SLGFKVSHGYGLTE 341 (569)
Q Consensus 263 ~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~YG~tE 341 (569)
+.++++.+++.|+++++|++.++|+++..|++.......+....++|.+++||+++++++.++++ .+|+++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 88899999999999999999999999999987653333332234899999999999999999997 56999999999999
Q ss_pred cccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCcccccccCCcccccc
Q 044926 342 TGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRK 421 (569)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 421 (569)
+++.+........ ....+.+.++. .++|+|+++|.+++.| +.|||+++|. +..
T Consensus 247 ~~g~~~~~~~~~~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t~~ 299 (437)
T 2y27_A 247 VMGPGVASECVET------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------TKE 299 (437)
T ss_dssp TTEEEEEECCTTT------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SCS
T ss_pred hcCCeeEEecCCC------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------CcC
Confidence 8443222111100 01233344555 9999998889999987 8999999982 333
Q ss_pred ccCCCCeeeecceEEEec-CCcE-----EEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEE
Q 044926 422 CMTDDGWFYTGDVGVMHS-DGYL-----EIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAF 495 (569)
Q Consensus 422 ~~~~~~~~~TGD~~~~~~-dg~l-----~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~ 495 (569)
.|+ ++||+|||+|++++ +|++ ++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++
T Consensus 300 ~~~-~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~ 378 (437)
T 2y27_A 300 ALP-IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLN 378 (437)
T ss_dssp SSC-CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEE
T ss_pred Cch-hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEE
Confidence 444 78999999999998 6985 8999999999999999999999999999999999999888776667888999
Q ss_pred EEecCCCCCC-CCHHHHHHHHhccCCCC-ccccEEEEe--cccCCCCCCcccHHH
Q 044926 496 VSLKEGSKSK-PTEKEMIEYCRGRLPHY-MVPKTVVFM--DELPKTSTGKIQKFV 546 (569)
Q Consensus 496 v~~~~~~~~~-~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~iP~t~~GKi~r~~ 546 (569)
|++.++.... .+.++++++|+++|+.+ .+|..+.++ ++||+|+ ||++|+.
T Consensus 379 v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 379 VEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp ECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 8887654311 24578999999999887 589888888 5999999 9999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=250.82 Aligned_cols=236 Identities=15% Similarity=0.091 Sum_probs=178.5
Q ss_pred CCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhh---hccCCCCCCCEEEEecCc-hhhhhhhHHHHHHHhCceEEEe
Q 044926 187 RTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNT---LSDWSVPTQPVYLWTLPM-FHSNGWCFPWAMAAVGGTNICI 262 (569)
Q Consensus 187 ~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~---~~~~~~~~~d~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 262 (569)
..++++++++|||||||.||+|.++|+++.....+. ...+++..+|++++..|+ +|..++...+.++..|+ .++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467789999999999999999999999998887743 355678999999999999 99999988888888888 6666
Q ss_pred ccCCHH-----------------------HHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCc
Q 044926 263 RKFDAS-----------------------IIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPP 319 (569)
Q Consensus 263 ~~~~~~-----------------------~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~ 319 (569)
..+++. .+++.|+++++|++.++|+++..|++........ +.++|.+++||++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM--KQSLAQITLGGTELN 244 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH--HHHCSEEEEESSCCC
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc--cCCeeEEEECCccCC
Confidence 667777 8888999999999999999999998874322222 338999999999999
Q ss_pred HHHHHHHH-hc--CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcc------cccceeeEEeCCCCCcc
Q 044926 320 AAVLLRTE-SL--GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVK------TTALTEVDVLDPKSGVS 390 (569)
Q Consensus 320 ~~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~i~d~~~~~~ 390 (569)
+++++++. +. ++++++.||+||+++++..+.. .++|.+ .+++ .++|+|++++++
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~ 307 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQT 307 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSB
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcC
Confidence 99999998 54 8999999999999876654321 136777 7776 999999989999
Q ss_pred cCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecC--C-------cEEEeccCCCeEEeCce
Q 044926 391 AKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD--G-------YLEIKDRSKDVIISGGE 458 (569)
Q Consensus 391 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d--g-------~l~~~GR~~~~i~~~G~ 458 (569)
++.| +.|||+|++.. ...+ -.+|+|||++...+. | .+..++|.++..++.|.
T Consensus 308 vp~G--~~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 308 VEYG--ERGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CCTT--CEEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCCC--CceEEEEEEcC------------cccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9988 89999999732 1111 225999999988654 2 24556777777666653
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-14 Score=111.99 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=72.8
Q ss_pred ccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCC-CCHHHHHHHHhccCCC-Ccc
Q 044926 447 DRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK-PTEKEMIEYCRGRLPH-YMV 524 (569)
Q Consensus 447 GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~l~~~l~~-~~~ 524 (569)
.|.||+|+++|.+|+|.+||++|.+||+|.++++++.+++.+++.+.++|+..++.... ...+++.+.+++++.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 38999999999999999999999999999999999999988888999999888765421 1224455555555432 234
Q ss_pred ccEEEEe--cccCCCCCCcccH
Q 044926 525 PKTVVFM--DELPKTSTGKIQK 544 (569)
Q Consensus 525 p~~~~~~--~~iP~t~~GKi~r 544 (569)
+..+.++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 5556666 489999 799987
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-08 Score=100.00 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=53.4
Q ss_pred CceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEec----CCcEEEeccCCCeEEeCceeeeHHHHHHHHHc
Q 044926 396 STLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHS----DGYLEIKDRSKDVIISGGENLSSVEVESVLYS 471 (569)
Q Consensus 396 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~ 471 (569)
|+.+||++++.+ |.| .|++||++++.. .+++.|.||.++++.+.|++++..+||++|.+
T Consensus 384 G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 384 GCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp TCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHH
T ss_pred CceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHH
Confidence 488999999742 222 399999999875 36799999999999999999999999999985
Q ss_pred CC------C--cceeEEEec
Q 044926 472 NP------A--VNEAAVVAR 483 (569)
Q Consensus 472 ~~------~--i~~~~v~~~ 483 (569)
.- + |.+..+...
T Consensus 447 a~~~l~~~g~~l~eft~~~~ 466 (581)
T 4eql_A 447 AKLVLESSGLDLKDFTSYAD 466 (581)
T ss_dssp C--------------CEEEE
T ss_pred HHHhhhhcCCEEEEEEEecC
Confidence 32 2 556665543
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.1e-08 Score=98.50 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=62.2
Q ss_pred ceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEec----CCcEEEeccCCCeEEeCceeeeHHHHHHHHHc-
Q 044926 397 TLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHS----DGYLEIKDRSKDVIISGGENLSSVEVESVLYS- 471 (569)
Q Consensus 397 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~- 471 (569)
+.+||++++.+ |+| .|++||++++.. .+++.+.||.++++.+.|+++++.+||++|.+
T Consensus 397 ~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a 459 (609)
T 4b2g_A 397 KEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNA 459 (609)
T ss_dssp CEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred CeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHH
Confidence 88999998742 333 399999999874 47899999999999999999999999999884
Q ss_pred -----CC--CcceeEEEecCCCCCCceeEEEEEec
Q 044926 472 -----NP--AVNEAAVVARPDEFWGETPCAFVSLK 499 (569)
Q Consensus 472 -----~~--~i~~~~v~~~~~~~~~~~~~~~v~~~ 499 (569)
.. .|.+..+........+ .-+++.++.
T Consensus 460 ~~~l~~~g~~l~eft~~~d~~~~p~-Hyv~~wEl~ 493 (609)
T 4b2g_A 460 SKLLREVNTSVVEYTSFADTKTIPG-HYVIYWELL 493 (609)
T ss_dssp HHGGGGTTEEEEEEEEEEECSSSSC-EEEEEEEEE
T ss_pred HHhhhccCCeEEEEEEecCCCCCCC-cEEEEEEEe
Confidence 22 3567666544333223 344455554
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-07 Score=93.56 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=62.7
Q ss_pred CceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecC----CcEEEeccCCCeEEeCceeeeHHHHHHHHHc
Q 044926 396 STLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSD----GYLEIKDRSKDVIISGGENLSSVEVESVLYS 471 (569)
Q Consensus 396 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d----g~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~ 471 (569)
|+.+||++++.+ |.| .|++||++++... .++.|.||.++++.+.|++++..+||++|.+
T Consensus 391 G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 391 GEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp TCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred CCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 388999999742 222 3999999998742 5789999999999999999999999999885
Q ss_pred ------CC--CcceeEEEecCCCCCCceeEEEEEec
Q 044926 472 ------NP--AVNEAAVVARPDEFWGETPCAFVSLK 499 (569)
Q Consensus 472 ------~~--~i~~~~v~~~~~~~~~~~~~~~v~~~ 499 (569)
.. .|.+..+........+ .-+++.+..
T Consensus 454 a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~wE~~ 488 (581)
T 4epl_A 454 AAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFWEIS 488 (581)
T ss_dssp HHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEEEES
T ss_pred HHHhhcccCCeEEEEEEecCCCCCCC-cEEEEEeec
Confidence 22 4667776654332223 344445654
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=1.6 Score=43.21 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=74.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--chHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN--VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
-.+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+.+++++. .+.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 468999999888888888878899999999988875 34445566888899999887755 478899999999999999
Q ss_pred EEccccHHHHHHHH
Q 044926 116 FVDFHSRALVREAV 129 (569)
Q Consensus 116 i~~~~~~~~~~~~~ 129 (569)
+..+.....+.+..
T Consensus 187 ~~~Ps~~~~l~~~~ 200 (437)
T 2y27_A 187 MVTPSYMLSIADEI 200 (437)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 99988877666554
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=1.6 Score=43.24 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=75.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--chHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN--VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
-.+|.+.+...+..++..+...++.++|++....+- ....+..+++++..|+.+++.++ ...+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 468999999988888888888899999999998874 34455567888899999887754 477889999999999999
Q ss_pred EEccccHHHHHHHHh
Q 044926 116 FVDFHSRALVREAVS 130 (569)
Q Consensus 116 i~~~~~~~~~~~~~~ 130 (569)
+..+.....+.+...
T Consensus 183 ~~~P~~~~~l~~~~~ 197 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQ 197 (436)
T ss_dssp ECCHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHH
Confidence 999988777666543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=91.99 E-value=1.8 Score=43.00 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=74.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--chHHHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEE
Q 044926 38 ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN--VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLV 115 (569)
Q Consensus 38 ~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (569)
-.+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+..++++. ...+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 368999999888888888878899999999988875 34445567888889999888765 478889999999999999
Q ss_pred EEccccHHHHHHHH
Q 044926 116 FVDFHSRALVREAV 129 (569)
Q Consensus 116 i~~~~~~~~~~~~~ 129 (569)
+..+.....+.+..
T Consensus 189 ~~~Ps~~~~l~~~~ 202 (443)
T 2y4o_A 189 LVTPSYMLNLIDEM 202 (443)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 99988777665543
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=80.42 E-value=21 Score=35.81 Aligned_cols=99 Identities=9% Similarity=0.093 Sum_probs=73.1
Q ss_pred cCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH-HHHHHHHhhhccceEeeccC
Q 044926 27 YGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA-LYELHFAVPFAAAVLNTINT 96 (569)
Q Consensus 27 ~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~ 96 (569)
.++.+|++. ++-.+|.+.+...+..+... .++.++|++...+|-.-. .+..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 356676654 22478999888777665544 478899999888876422 2334677888899888765
Q ss_pred CCCHHHHHHHHhhcCCeEEEEccccHHHHHHHH
Q 044926 97 RLDARTVSLLLQHCQSKLVFVDFHSRALVREAV 129 (569)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (569)
..+.+.+...+++.++..++..+.....+.+..
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 269 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQQG 269 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcC
Confidence 578999999999999999999988777665543
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=80.04 E-value=31 Score=34.99 Aligned_cols=99 Identities=9% Similarity=-0.032 Sum_probs=72.5
Q ss_pred cCCCCeEEe---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH--HH-HHHHhhhccceEeec
Q 044926 27 YGDSPSIIY---------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPAL--YE-LHFAVPFAAAVLNTI 94 (569)
Q Consensus 27 ~p~~~al~~---------~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~~~v~l 94 (569)
.|+.+|++. ++-.+|.+.+...+...... .++.++|++....|-+-.+ .. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 356666654 22479999888777665543 3778999988888765333 32 478888899988866
Q ss_pred cCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHH
Q 044926 95 NTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAV 129 (569)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (569)
+...++.+...+++.++..++..+.....+.+..
T Consensus 257 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 257 -PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp -SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc
Confidence 4578889999999999999999988777665544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 569 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-121 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-118 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-105 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-102 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-88 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 6e-87 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-84 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 369 bits (949), Expect = e-121
Identities = 124/555 (22%), Positives = 210/555 (37%), Gaps = 36/555 (6%)
Query: 20 LERAATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPN 73
L+R GD +II+ + ++ + H + A++LL +GI +G VV++ P
Sbjct: 78 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137
Query: 74 VPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFP 133
VP A AV + I V+ + S+LV R
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 197
Query: 134 PDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPI 193
D + S + + + + + + L+ K PE + E DP+
Sbjct: 198 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW-WRDLIEKASPEHQPEAMNAE-DPL 255
Query: 194 VLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD-WSVPTQPVYLWTLPMFHSNGWCFP-WA 251
+ YTSG+T PKGV+H G + A T + +Y T + G + +
Sbjct: 256 FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYG 315
Query: 252 MAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAK 307
A G T + + + ++ +H V + AP + L D + +
Sbjct: 316 PLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSS 375
Query: 308 PVHLVTAGAPPPAAVLLRTESL----GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEK 363
L + G P V + TETGG +++ P
Sbjct: 376 LRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGA 425
Query: 364 AKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC--IMLGYLKDPIGTRK 421
+LKA + + ++D + ++G+T G +V+ D +
Sbjct: 426 IELKAGSATRPFFGVQPALVDNEGHP---QEGATEGNLVITDSWPGQARTLFGDHERFEQ 482
Query: 422 C--MTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAA 479
T +++GD DGY I R DV+ G L + E+ES L ++P + EAA
Sbjct: 483 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 542
Query: 480 VVARPDEFWGETPCAFVSLKEGSKSKP-TEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
VV P G+ A+V+L G + P E+ + R + P + + D LPKT
Sbjct: 543 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR 602
Query: 539 TGKIQKFVLREIAEN 553
+GKI + +LR+IA
Sbjct: 603 SGKIMRRILRKIAAG 617
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 358 bits (920), Expect = e-118
Identities = 179/555 (32%), Positives = 268/555 (48%), Gaps = 35/555 (6%)
Query: 6 PSPANSTPLTPLVFLERAATVYGDSPSIIY----NNITYTWSDTHHRCLQLASSLLSIGI 61
PS L FLERAA ++G + T+++ + R +L L ++G+
Sbjct: 3 PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGV 62
Query: 62 SRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHS 121
G V+ + N E +FAVP AVL+T N RL + ++ +L H + K++ D +
Sbjct: 63 GVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL 122
Query: 122 RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEF 181
LV +LK ++ D+ + + + E+L + DP
Sbjct: 123 LPLVEAI----RGELKTVQHFVVMDEKA-------------PEGYLAYEEALGEEADPVR 165
Query: 182 EWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFI--VAVNTLSDWSVPTQPVYLWTLP 239
E + YT+GTT PKGVV+ HR + + +A + + ++ + V L +P
Sbjct: 166 VP-----ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 220
Query: 240 MFHSNGWCFPWAMAAVGGTNICI-RKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDP 298
MFH N WC P+A VG + + D + + +L GVT G P V L++Y +
Sbjct: 221 MFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLES 280
Query: 299 DKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLL 358
LK + LV G+ P +++ R E +G +V GYGLTET +VV K + L
Sbjct: 281 TGHRLKTLR--RLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 338
Query: 359 PAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIG 418
EK LKA+ G L + V D G +DG LGE+ L+G I GY +
Sbjct: 339 SEEEKLTLKAKTG-LPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 396
Query: 419 TRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
TR +T DG+F TGD+ V +GY+EIKDR KD+I SGGE +SSV++E+ L +P V EA
Sbjct: 397 TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA 456
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538
AVVA P W E P A V + + E+ + + +P VF +E+P+TS
Sbjct: 457 AVVAIPHPKWQERPLAVVVPRGEKPT--PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTS 514
Query: 539 TGKIQKFVLREIAEN 553
GK K LRE +N
Sbjct: 515 AGKFLKRALREQYKN 529
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 326 bits (837), Expect = e-105
Identities = 122/563 (21%), Positives = 214/563 (38%), Gaps = 42/563 (7%)
Query: 20 LERAATVYGDSPSIIY------NNITYTWSDTHHRCLQLASSLL-SIGISRGHVVSVVSP 72
++R A + +II+ + T+ + Q+A L S+G+ +G V+V P
Sbjct: 65 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124
Query: 73 NVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLF 132
VP A+ A+ + + + ++ + SK+V S + +
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKR 184
Query: 133 PPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDP 192
D + V ++++P+++ + K + P DP
Sbjct: 185 IVDDALRETPGVRHVL---VYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDP 241
Query: 193 IVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD-WSVPTQPVYLWTLPMFHSNGWCFPWA 251
+ L YTSG+T +PKGV H G + A+ T+ + + V+ + G +
Sbjct: 242 LFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVY 301
Query: 252 MAAVGGTNICIRK-----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLA 306
+ G + + + S +D+I H VT AP L +L D + L
Sbjct: 302 GPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK 361
Query: 307 KPVHLVTAGAPPPAAVLLRTESL----GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAE 362
L + G P A V + Y TE+G +V+ A
Sbjct: 362 SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP---------LAGG 412
Query: 363 KAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC--IMLGYLKDPIGTR 420
+K + VLDP +G + G + ++ K+
Sbjct: 413 VTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE-GVLAVKAAWPSFARTIWKNHDRYL 471
Query: 421 KCMTD--DGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEA 478
+ G+++TGD DGY+ I R DV+ G LS+ E+E+ + +P V E
Sbjct: 472 DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC 531
Query: 479 AVVARPDEFWGETPCAFVSLKEGSKSKPT--------EKEMIEYCRGRLPHYMVPKTVVF 530
AVV D+ G+ AFV LK S +K ++ R + + PK ++
Sbjct: 532 AVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIIL 591
Query: 531 MDELPKTSTGKIQKFVLREIAEN 553
+D+LPKT +GKI + +LR+I
Sbjct: 592 VDDLPKTRSGKIMRRILRKILAG 614
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 318 bits (815), Expect = e-102
Identities = 121/562 (21%), Positives = 208/562 (37%), Gaps = 39/562 (6%)
Query: 2 EQLKPSPANSTPLTPLV---FLERAATVYGDSPSII-----YNNITYTWSDTHHRCLQLA 53
+ +K PA PL L +A Y P I + + T+++ ++LA
Sbjct: 2 KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLA 61
Query: 54 SSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSK 113
++ G++ H + V S N + F + N + R + + Q
Sbjct: 62 EAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPT 121
Query: 114 LVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESL 173
+VFV + P + S++ + F T
Sbjct: 122 VVFVSKKGLQKILNVQKKLP-----------IIQKIIIMDSKTDYQGFQSMYTFVTSHLP 170
Query: 174 VAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGI---FIVAVNTLSDWSVPT 230
+ +F + ++ +SG+T PKGV HR F A + + +
Sbjct: 171 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 230
Query: 231 QPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLN 290
L +P H G G + + +F+ + ++ + + P + +
Sbjct: 231 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS 290
Query: 291 MLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCA 350
+ DK L + A + + GYGLTET ++
Sbjct: 291 FFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP 350
Query: 351 WKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIML 410
K K E V+D +G + + GE+ +RG IM
Sbjct: 351 E------------GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMS 396
Query: 411 GYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLY 470
GY+ +P T + DGW ++GD+ D + I DR K +I G ++ E+ES+L
Sbjct: 397 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL 456
Query: 471 SNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRL-PHYMVPKTVV 529
+P + +A V PD+ GE P A V L+ G TEKE+++Y ++ + VV
Sbjct: 457 QHPNIFDAGVAGLPDDDAGELPAAVVVLEHG--KTMTEKEIVDYVASQVTTAKKLRGGVV 514
Query: 530 FMDELPKTSTGKIQKFVLREIA 551
F+DE+PK TGK+ +REI
Sbjct: 515 FVDEVPKGLTGKLDARKIREIL 536
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 281 bits (718), Expect = 1e-88
Identities = 100/540 (18%), Positives = 185/540 (34%), Gaps = 67/540 (12%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
E + ++ +I+ N T+ + + + QLA + GI + +V ++ L+
Sbjct: 28 LFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF 87
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP 138
AV A I+ + +L Q++++ H L+ ++
Sbjct: 88 IGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFE 147
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYT 198
+ I + + V P D + YT
Sbjct: 148 EDTIKIREGTNLHV---------------------------------PSKSTDLAYVIYT 174
Query: 199 SGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGT 258
SGTT +PKG + H+GI + V + +V + + + G +
Sbjct: 175 SGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGAS 234
Query: 259 NICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG 315
I K D I + +T + P + L R + L+TAG
Sbjct: 235 LYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQ--------TLITAG 286
Query: 316 APPPAAVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTT 375
+ +++ + + + YG TET + +
Sbjct: 287 SATSPSLVNKWKE-KVTYINAYGPTETTICATTWVATKET-----------IGHSVPIGA 334
Query: 376 ALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTD------DGWF 429
+ + + K G GE+ + G + GY K P T + D + +
Sbjct: 335 PIQNTQIYIVDENLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLY 393
Query: 430 YTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWG 489
TGD SDG +E R + + G + EVES+L + ++E AV D
Sbjct: 394 KTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQ 453
Query: 490 ETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
CA+ ++ +++ ++ LP YM+P + +D++P TS GKI + L E
Sbjct: 454 PYLCAYFVSEKH----IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 277 bits (709), Expect = 6e-87
Identities = 116/539 (21%), Positives = 195/539 (36%), Gaps = 41/539 (7%)
Query: 19 FLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALY 78
L A YGD +I N +++ + R +LA+ +GI + V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 ELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKP 138
E+ FA+ A+ + ++ + ++ + +++ P
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP 149
Query: 139 PPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYT 198
+I + E + D L +
Sbjct: 150 TLKNIIVAGEAEEFLPLEDLH-------------------TEPVKLPEVKSSDVAFLQLS 190
Query: 199 SGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW--AMAAVG 256
G+T K + H ++ + VYL LPM H+ P + G
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250
Query: 257 GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGA 316
G + F LI R VT P + + + L+ L GA
Sbjct: 251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVW--MDAASSRRDDLSSLQVLQVGGA 308
Query: 317 PPPAAVLLR-TESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTT 375
A R G + +G+ E + QG +
Sbjct: 309 KFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI----------IVNTQGKPMS 358
Query: 376 ALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVG 435
E V D G ++ RG + GY K T+DG++ TGD+
Sbjct: 359 PYDESRVWDDHDRDVK---PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415
Query: 436 VMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETPCAF 495
+ DGY+ ++ R+KD I GGE +++ EVE+ L ++PAV++AA+V+ PD+F GE C F
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475
Query: 496 VSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553
+ ++ + P E+ + R R L Y +P V F++ P+T GK+ K LRE
Sbjct: 476 IIPRDEA---PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 270 bits (690), Expect = 1e-84
Identities = 130/538 (24%), Positives = 207/538 (38%), Gaps = 51/538 (9%)
Query: 19 FLERAATVYGDSPSIIY--NNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76
L RAAT D ++ + T ++ R +A+ L + G+ V+VV+PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDL 136
+ A+ AV +N RL + ++ L++ + + V V+
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIA------VGRQVADAIFQS 120
Query: 137 KPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLN 196
++ D S+ P I D Q R P +
Sbjct: 121 GSGARIIFLGDLVRDGEPYSYGPPIEDPQ---------------------REPAQPAFIF 159
Query: 197 YTSGTTMSPKGVVHCHRGIF--IVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPWAMAA 254
YTSGTT PK + R ++ ++T V L +P++H G+ A
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219
Query: 255 VG-GTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVT 313
GT + + +F L+++ VT + P L+ L+ LKL H+
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279
Query: 314 AGAPPPAAVLLRT-ESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGV 372
AGA P AVL + L + + YG TE + K E A +
Sbjct: 280 AGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGT------EMAPGFFSEVR 333
Query: 373 KTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTG 432
VD + +G IV +GYL P T + + DGW+ T
Sbjct: 334 IVRIGGGVDEIVA--------NGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTS 384
Query: 433 DVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDEFWGETP 492
DV V +G + I R D+IISGGEN+ E+E VL + P V E V+ D+ WG++
Sbjct: 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSV 444
Query: 493 CAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549
A V + G + + +CR L + PK +D+LPK + K+ + L +
Sbjct: 445 TACVVPRLG--ETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQ 500
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 569 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 82.93 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=6e-77 Score=632.20 Aligned_cols=513 Identities=23% Similarity=0.316 Sum_probs=422.2
Q ss_pred HHHHHHHHHHcCCCCeEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 17 LVFLERAATVYGDSPSIIYNN------ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 17 ~~~l~~~a~~~p~~~al~~~~------~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
.++|+++++.+||++|+++.+ +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 75 ~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav 154 (643)
T d1pg4a_ 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 154 (643)
T ss_dssp HHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeE
Confidence 567888999999999999642 68999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCC
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNI 161 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (569)
++|+++.++.+++.+++++++++++|+++.. ............ ......++++....... ..
T Consensus 155 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~--------~~ 225 (643)
T d1pg4a_ 155 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN-VTSVEHVIVLKRTGSDI--------DW 225 (643)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT-CCSCCEEEEECSSCCCC--------CC
T ss_pred EEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccc-cccceEEEEeccCCccc--------cc
Confidence 9999999999999999999999999997642 333334333221 12245666665543211 00
Q ss_pred CCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHh-hhhccCCCCCCCEEEEecCc
Q 044926 162 SDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAV-NTLSDWSVPTQPVYLWTLPM 240 (569)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl 240 (569)
.... .....+......+.. .....+++|+++|+|||||||.||||+++|++++.... .....+++.++|++++..|+
T Consensus 226 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 303 (643)
T d1pg4a_ 226 QEGR-DLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADV 303 (643)
T ss_dssp CBTT-EEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCT
T ss_pred cccc-chhhhhhhcccCccc-CCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCCh
Confidence 1110 122333333333222 22345688999999999999999999999999765544 44556789999999999999
Q ss_pred hhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeC
Q 044926 241 FHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAG 315 (569)
Q Consensus 241 ~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g 315 (569)
+|++++.. ++++++.|+++++.+. +++..+++.++++++|+++++|+++..|++..........+++||.++++|
T Consensus 304 ~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G 383 (643)
T d1pg4a_ 304 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVG 383 (643)
T ss_dssp TSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEe
Confidence 99999876 5677889999998753 488999999999999999999999999998765443444445999999999
Q ss_pred CCCcHHHHHHHH-hc---CCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCccc
Q 044926 316 APPPAAVLLRTE-SL---GFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSA 391 (569)
Q Consensus 316 ~~l~~~~~~~~~-~~---~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~ 391 (569)
+++++++.+++. .+ ++++++.||+||+++++...... .......++|.|.++. +++|+|+ +|.++
T Consensus 384 ~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~ivd~-~g~~~ 452 (643)
T d1pg4a_ 384 EPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG---------AIELKAGSATRPFFGV-QPALVDN-EGHPQ 452 (643)
T ss_dssp SCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT---------TCCBCTTCCBSBCTTC-CEEEECT-TCCBC
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCC---------ccCCCCCccccccCCC-EEEEECC-CCCCC
Confidence 999999999887 44 58899999999998776543211 1122346789999998 9999998 67888
Q ss_pred CCCCCceeEEEEec--CcccccccCCcccccccc--CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHH
Q 044926 392 KRDGSTLGEIVLRG--GCIMLGYLKDPIGTRKCM--TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVES 467 (569)
Q Consensus 392 ~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~ 467 (569)
+.+ +.|||+|+| |+++.||+++++.+...+ ..+|||+|||+|++++||++++.||+||+||++|++|+|.+||+
T Consensus 453 ~~g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~ 530 (643)
T d1pg4a_ 453 EGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIES 530 (643)
T ss_dssp CSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHH
T ss_pred CCC--ceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHH
Confidence 877 899999999 578899999988766554 34789999999999999999999999999999999999999999
Q ss_pred HHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCH---HHHHHHHhccCCCCccccEEEEecccCCCCCCcccH
Q 044926 468 VLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTE---KEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQK 544 (569)
Q Consensus 468 ~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r 544 (569)
+|.+||+|.+|+|++.+++..|+.++++|++.++.. .+. .+|+++++++|+++++|+.|+++++||+|++||++|
T Consensus 531 ~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~--~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R 608 (643)
T d1pg4a_ 531 ALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE--PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 608 (643)
T ss_dssp HHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--CCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCH
T ss_pred HHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCC--CCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccH
Confidence 999999999999999999988999999999988765 333 579999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 044926 545 FVLREIAENMG 555 (569)
Q Consensus 545 ~~l~~~~~~~~ 555 (569)
++|++++....
T Consensus 609 ~~Lr~~~~~~~ 619 (643)
T d1pg4a_ 609 RILRKIAAGDT 619 (643)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHhcCCc
Confidence 99999997643
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.8e-77 Score=625.74 Aligned_cols=518 Identities=34% Similarity=0.521 Sum_probs=408.9
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCCeEEeCC----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Q 044926 8 PANSTPLTPLVFLERAATVYGDSPSIIYNN----ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFA 83 (569)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~----~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 83 (569)
.+...++||.++|+++|+++||++|+++.. +++||+||.++++++|++|.+.|+++||+|+|+++|++++++++||
T Consensus 5 ~~~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 84 (534)
T d1v25a_ 5 TMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 84 (534)
T ss_dssp CBCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 444568899999999999999999998843 5799999999999999999999999999999999999999999999
Q ss_pred hhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCC
Q 044926 84 VPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISD 163 (569)
Q Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (569)
|+++|++++|++|.++.+++.++++.++++.++++................ ....+.........
T Consensus 85 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------ 149 (534)
T d1v25a_ 85 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT---VQHFVVMDEKAPEG------------ 149 (534)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSS---CCEEEESSSCCCTT------------
T ss_pred HHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccc---cceeEEeecccccc------------
Confidence 999999999999999999999999999999999999988887777665543 23333333222111
Q ss_pred CcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhh--hhccCCCCCCCEEEEecCch
Q 044926 164 DQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVN--TLSDWSVPTQPVYLWTLPMF 241 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~--~~~~~~~~~~d~~~~~~pl~ 241 (569)
....... .. .........++++++++|||||||.||+|.++|.+++..+.. ....+.....|++++..|++
T Consensus 150 ---~~~~~~~-~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 222 (534)
T d1v25a_ 150 ---YLAYEEA-LG---EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 222 (534)
T ss_dssp ---CEEHHHH-CC---SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTT
T ss_pred ---ccccccc-cc---ccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchh
Confidence 0111111 01 111122356779999999999999999999999999765533 43445678899999999999
Q ss_pred hhhhhhHHHHHHHhCceEEEecc-CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcH
Q 044926 242 HSNGWCFPWAMAAVGGTNICIRK-FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPA 320 (569)
Q Consensus 242 ~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~ 320 (569)
|..++...+..++.|+..++.++ +++..++..+.++++|++.++|.++..++.........++ ++|.+++||+++++
T Consensus 223 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~--~lr~~~~gG~~~~~ 300 (534)
T d1v25a_ 223 HVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLK--TLRRLVVGGSAAPR 300 (534)
T ss_dssp SHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCS--SCCEEEECSSCCCH
T ss_pred hhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccccccc--ceeEEEEecCCCCH
Confidence 99999998888888888888754 8999999999999999999999999999887655555555 99999999999999
Q ss_pred HHHHHHHhcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeE
Q 044926 321 AVLLRTESLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGE 400 (569)
Q Consensus 321 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 400 (569)
...+++++++.++++.||+||++..+..+...................++|.|++++ +++|+|+ ++..++.+.++.||
T Consensus 301 ~~~~~~~~~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~-~~~~~~~~~~~~Ge 378 (534)
T d1v25a_ 301 SLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGE 378 (534)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEE
T ss_pred HHHHHHHHhCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCc-EEEEECC-CCCCCCCCCCeeEE
Confidence 999999999999999999999999888776655555555666666778999999998 9999997 67777776668999
Q ss_pred EEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEE
Q 044926 401 IVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAV 480 (569)
Q Consensus 401 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 480 (569)
|+++|++++.||+++++.+...+..+|||+|||+|++++||.+++.||.+|+||.+|++|+|.+||++|.+||+|.+++|
T Consensus 379 l~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v 458 (534)
T d1v25a_ 379 VQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV 458 (534)
T ss_dssp EEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CE
T ss_pred EEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCceeEEEEEecCCCCCCCCHHHHHH-HHhccCCCCccccEEEEecccCCCCCCcccHHHHHHHHHhc
Q 044926 481 VARPDEFWGETPCAFVSLKEGSKSKPTEKEMIE-YCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 554 (569)
Q Consensus 481 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 554 (569)
++.+++.+++.++++|+..++.. ..+++++ .++++|++|++|+.|+++++||+|++|||+|++||++|+++
T Consensus 459 ~~~~~~~~~~~l~a~vv~~~~~~---~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~ 530 (534)
T d1v25a_ 459 VAIPHPKWQERPLAVVVPRGEKP---TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 530 (534)
T ss_dssp EEEECSSSSEEEEECC----------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EEEECCCCCeEEEEEEEeCCCCC---CHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence 99999988999999988876543 3344444 57888999999999999999999999999999999999765
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=9.9e-75 Score=608.72 Aligned_cols=516 Identities=23% Similarity=0.328 Sum_probs=425.9
Q ss_pred CCCCCCCC---CCchHHHHHHHHHHc---CCCCeEEeCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH
Q 044926 5 KPSPANST---PLTPLVFLERAATVY---GDSPSIIYNN--ITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPA 76 (569)
Q Consensus 5 ~~~~~~~~---~~tl~~~l~~~a~~~---p~~~al~~~~--~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~ 76 (569)
+..+++.. +.|+.++|.++++++ |+.+|+++.+ +++||+||.+++.++|.+|+++|+++||+|+|+++|+++
T Consensus 5 ~~~p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e 84 (541)
T d1lcia_ 5 KKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ 84 (541)
T ss_dssp EECCCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH
Confidence 34455444 478999999999998 7778888753 689999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccceEeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccC
Q 044926 77 LYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQS 156 (569)
Q Consensus 77 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (569)
+++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.+.....+. ...+++++......
T Consensus 85 ~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----- 156 (541)
T d1lcia_ 85 FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPI---IQKIIIMDSKTDYQ----- 156 (541)
T ss_dssp THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTT---CCEEEETTCSSCBT-----
T ss_pred HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccc---cceeeeecCCcccc-----
Confidence 9999999999999999999999999999999999999999999998888888776654 34555544332111
Q ss_pred CCCCCCCCcccchhhHhhhc----C--CCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhcc---CC
Q 044926 157 HHPNISDDQFFSTYESLVAK----G--DPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSD---WS 227 (569)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~---~~ 227 (569)
....+.+.... . .....+.....++++++++|||||||.||+|.++|++++......... ..
T Consensus 157 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~ 227 (541)
T d1lcia_ 157 ---------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 227 (541)
T ss_dssp ---------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred ---------ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccc
Confidence 01122222111 1 111122233456789999999999999999999999998766555443 35
Q ss_pred CCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCC
Q 044926 228 VPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAK 307 (569)
Q Consensus 228 ~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 307 (569)
+...+++++.+|++|..++...+..+..++..+.....+....+..+.++++|.+.++|.++..+.+.......... +
T Consensus 228 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~--~ 305 (541)
T d1lcia_ 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS--N 305 (541)
T ss_dssp CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCT--T
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccc--c
Confidence 78899999999999999999988889999998888889999999999999999999999999999988766666665 9
Q ss_pred CceEEEeCCCCcHHHHHHHH-hcC-CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCC
Q 044926 308 PVHLVTAGAPPPAAVLLRTE-SLG-FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDP 385 (569)
Q Consensus 308 l~~~~~~g~~l~~~~~~~~~-~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~ 385 (569)
++.+++||+++++...+++. .++ ..+++.||+||+++.++...... ....++|.|++++ +++|+|+
T Consensus 306 l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-----------~~~~svG~p~~~~-~~~i~d~ 373 (541)
T d1lcia_ 306 LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EAKVVDL 373 (541)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC--------------CCCCBEECTTC-EEEEECT
T ss_pred ceEEEecccccccccccccccccCCceeeecCCccccCceEEecCccc-----------CCCCccccccCCC-EEEEEEC
Confidence 99999999999999999987 555 56899999999988877654322 1235789999999 9999999
Q ss_pred CCCcccCCCCCceeEEEEecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHH
Q 044926 386 KSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEV 465 (569)
Q Consensus 386 ~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~i 465 (569)
+++..++.| +.|||+|+|++++.||++++..+...+..++||+|||+|++++||.+++.||.+|+||++|++|+|.+|
T Consensus 374 d~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~I 451 (541)
T d1lcia_ 374 DTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAEL 451 (541)
T ss_dssp TTCCBCCTT--CCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHH
T ss_pred CCCcCCCCC--CeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHH
Confidence 999999988 899999999999999999998888888879999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCc-cccEEEEecccCCCCCCcccH
Q 044926 466 ESVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYM-VPKTVVFMDELPKTSTGKIQK 544 (569)
Q Consensus 466 E~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~~~~~~~iP~t~~GKi~r 544 (569)
|++|.++|+|.+|+|++.+++..|+.++++|++.++.. .+.++|++++++++.++. +|..++++++||+|++|||+|
T Consensus 452 E~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~--~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r 529 (541)
T d1lcia_ 452 ESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT--MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDA 529 (541)
T ss_dssp HHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--CCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCH
T ss_pred HHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCC--CCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccH
Confidence 99999999999999999998888899999999988766 788999999999998764 799999999999999999999
Q ss_pred HHHHHHHHhcC
Q 044926 545 FVLREIAENMG 555 (569)
Q Consensus 545 ~~l~~~~~~~~ 555 (569)
++|++++.+..
T Consensus 530 ~~l~~~~~~~~ 540 (541)
T d1lcia_ 530 RKIREILIKAK 540 (541)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998764
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-74 Score=613.95 Aligned_cols=516 Identities=23% Similarity=0.331 Sum_probs=413.5
Q ss_pred HHHHHHHHHHcCCCCeEEeCC------eeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHHHHHHHhhhccc
Q 044926 17 LVFLERAATVYGDSPSIIYNN------ITYTWSDTHHRCLQLASSLL-SIGISRGHVVSVVSPNVPALYELHFAVPFAAA 89 (569)
Q Consensus 17 ~~~l~~~a~~~p~~~al~~~~------~~~Ty~el~~~v~~~A~~L~-~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 89 (569)
.++|+++|+.+||++|+++.+ +++||+||.++++++|.+|+ +.|+++||+|+|+++|++++++++|||+++|+
T Consensus 62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Ga 141 (640)
T d1ry2a_ 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 141 (640)
T ss_dssp HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCce
Confidence 788999999999999999742 68999999999999999997 57999999999999999999999999999999
Q ss_pred eEeeccCCCCHHHHHHHHhhcCCeEEEEcccc---------HHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCC
Q 044926 90 VLNTINTRLDARTVSLLLQHCQSKLVFVDFHS---------RALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPN 160 (569)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (569)
+++|+++.++.+++.++++++++++++++... ...+......... .............. ..
T Consensus 142 v~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~ 211 (640)
T d1ry2a_ 142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPG---VRHVLVYRKTNNPS-------VA 211 (640)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTT---CCEEEEECSSCCSS-------CC
T ss_pred EeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcc---cceeeeeccccccc-------cc
Confidence 99999999999999999999999999998643 2222222222211 23333333222111 00
Q ss_pred CCCCcccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhh-ccCCCCCCCEEEEecC
Q 044926 161 ISDDQFFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL-SDWSVPTQPVYLWTLP 239 (569)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~-~~~~~~~~d~~~~~~p 239 (569)
..... .......... ........+..++|+++|+|||||||.||||+++|.+++....... ..+.+..+|++++..|
T Consensus 212 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~p 289 (640)
T d1ry2a_ 212 FHAPR-DLDWATEKKK-YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD 289 (640)
T ss_dssp CCSSS-EEEHHHHHTT-SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSC
T ss_pred ccccc-cccccccccc-cccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccc
Confidence 00000 1112222222 2222223345678999999999999999999999999877654444 4578899999999999
Q ss_pred chhhhhhhH-HHHHHHhCceEEEecc----CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEe
Q 044926 240 MFHSNGWCF-PWAMAAVGGTNICIRK----FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTA 314 (569)
Q Consensus 240 l~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 314 (569)
++|.+++.+ .+++++.|+++++.+. .++..+++.++++++|++.++|+++..|.+..........++++|.+++|
T Consensus 290 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~g 369 (640)
T d1ry2a_ 290 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSV 369 (640)
T ss_dssp TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEEC
T ss_pred hhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEe
Confidence 999999765 6677889998888764 38899999999999999999999999998876554444445599999999
Q ss_pred CCCCcHHHHHHHH-hcC---CeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcc
Q 044926 315 GAPPPAAVLLRTE-SLG---FKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVS 390 (569)
Q Consensus 315 g~~l~~~~~~~~~-~~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~ 390 (569)
|+++++++.+++. .++ +++++.||+||++........... ......++|.|.+++ +++|+|++++..
T Consensus 370 G~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~~~i~d~~~~~~ 440 (640)
T d1ry2a_ 370 GEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNTGEE 440 (640)
T ss_dssp SSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSSTTC
T ss_pred cccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCc--------CCCCCcccccccCCc-eEEEEeCCCCcc
Confidence 9999999999987 443 679999999999877655432211 122346799999999 999999877766
Q ss_pred cCCCCCceeEEEEec--CcccccccCCccccccccC--CCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHH
Q 044926 391 AKRDGSTLGEIVLRG--GCIMLGYLKDPIGTRKCMT--DDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVE 466 (569)
Q Consensus 391 ~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE 466 (569)
.+..+ +.|||++++ |+++.||+++++.+...+. .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||
T Consensus 441 ~~~~~-~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE 519 (640)
T d1ry2a_ 441 LNTSH-AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 519 (640)
T ss_dssp EECSS-CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHH
T ss_pred cCCCC-ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHH
Confidence 65542 679999998 6899999999998877763 368999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcceeEEEecCCCCCCceeEEEEEecCCCCCC--------CCHHHHHHHHhccCCCCccccEEEEecccCCCC
Q 044926 467 SVLYSNPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSK--------PTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTS 538 (569)
Q Consensus 467 ~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~ 538 (569)
++|.+||+|.+|+|++.+++..|+.++++|++.++.... ...++|.++++++|++|++|+.|+++++||+|+
T Consensus 520 ~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~ 599 (640)
T d1ry2a_ 520 AAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTR 599 (640)
T ss_dssp HHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCT
T ss_pred HHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCC
Confidence 999999999999999999999999999999998764311 123678889999999999999999999999999
Q ss_pred CCcccHHHHHHHHHhc
Q 044926 539 TGKIQKFVLREIAENM 554 (569)
Q Consensus 539 ~GKi~r~~l~~~~~~~ 554 (569)
+|||+|++||+++.+.
T Consensus 600 sGKi~R~~Lr~~~~~~ 615 (640)
T d1ry2a_ 600 SGKIMRRILRKILAGE 615 (640)
T ss_dssp TSCBCHHHHHHSCC--
T ss_pred CcCccHHHHHHHHhCC
Confidence 9999999999987653
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=3e-71 Score=578.18 Aligned_cols=481 Identities=21% Similarity=0.246 Sum_probs=405.1
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
....||.++|+++|+++||++|+++.++++||+||.++++++|.+|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v 99 (514)
T d1amua_ 20 PRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGA 99 (514)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence 36689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchh
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTY 170 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (569)
++|+++.++.+++.++++.++++++|++....+.+... . ............
T Consensus 100 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----~----~~~~~~~~~~~~--------------------- 150 (514)
T d1amua_ 100 YVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----Q----FNGQVEIFEEDT--------------------- 150 (514)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----C----CCSEEEECCCST---------------------
T ss_pred EEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh----c----cccccccccccc---------------------
Confidence 99999999999999999999999999998876543321 1 111111111110
Q ss_pred hHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhhhhHHH
Q 044926 171 ESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNGWCFPW 250 (569)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g~~~~~ 250 (569)
...........+..++++++++|||||||.||+|.++|.++..........+.....|++++..|++|..++...+
T Consensus 151 ----~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 226 (514)
T d1amua_ 151 ----IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMF 226 (514)
T ss_dssp ----TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHH
T ss_pred ----ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccccc
Confidence 0001111122335678999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhCceEEEecc---CCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH
Q 044926 251 AMAAVGGTNICIRK---FDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE 327 (569)
Q Consensus 251 ~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~ 327 (569)
..++.|++.++... .+....+..+..+.++.+..+|...... ...++. +++.++++|+.+++++..++.
T Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~l~~~~~~G~~~~~~~~~~~~ 298 (514)
T d1amua_ 227 MALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERIL--SIQTLITAGSATSPSLVNKWK 298 (514)
T ss_dssp HHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCC--SCSEEEEESSCCCHHHHHHHT
T ss_pred ccccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccc--cccEEEEecccCCHHHhhhhc
Confidence 89999999888754 5678889999999999999998765422 223344 899999999999999988766
Q ss_pred hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEecCc
Q 044926 328 SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGC 407 (569)
Q Consensus 328 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 407 (569)
+ ++.+++.||+||++.++......... .......+.+.++. .+.+.|+ ++..++.| +.|||+|+||+
T Consensus 299 ~-~~~~~~~yG~tE~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~v~~~d~-~~~~~~~g--~~GEl~v~~~~ 365 (514)
T d1amua_ 299 E-KVTYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEG 365 (514)
T ss_dssp T-TSEEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETT
T ss_pred c-ceeEEEeeccccCceeeeeccccccc--------cCcccccccceeee-eEeeecc-cceecCCC--CeeEEEEccCc
Confidence 5 68999999999998877654432211 11223456666666 8899886 78888888 89999999999
Q ss_pred ccccccCCcccccccc------CCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEE
Q 044926 408 IMLGYLKDPIGTRKCM------TDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVV 481 (569)
Q Consensus 408 ~~~gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 481 (569)
+++||++++..+...| +.++||+|||+|++|+||++++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|+
T Consensus 366 ~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~ 445 (514)
T d1amua_ 366 LARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVS 445 (514)
T ss_dssp CCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEE
T ss_pred ccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 9999999998776665 3478999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhccCCCCccccEEEEecccCCCCCCcccHHHHHH
Q 044926 482 ARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGRLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 549 (569)
Q Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~ 549 (569)
+.+++..|+.++++|+..++ .+.++|+++++++|+.|++|..++++++||+|++|||+|++|++
T Consensus 446 ~~~~~~~g~~~~a~v~~~~~----~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 446 VHKDHQEQPYLCAYFVSEKH----IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EEECTTSCEEEEEEEEESSC----CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred EEECCCCCEEEEEEEEcCCC----CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 99998889999999887665 57899999999999999999999999999999999999999987
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.9e-71 Score=581.58 Aligned_cols=501 Identities=24% Similarity=0.353 Sum_probs=422.0
Q ss_pred CCCCchHHHHHHHHHHcCCCCeEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccce
Q 044926 11 STPLTPLVFLERAATVYGDSPSIIYNNITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAV 90 (569)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 90 (569)
|++.|+.++|+++|+++||++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i 101 (536)
T d1mdba_ 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (536)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCHHHHHHHHhhcCCeEEEEccccHH-----HHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCc
Q 044926 91 LNTINTRLDARTVSLLLQHCQSKLVFVDFHSRA-----LVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQ 165 (569)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (569)
++|++|+++.+++.++++.++++++++++.... ........... ....+.......
T Consensus 102 ~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------- 162 (536)
T d1mdba_ 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT---LKNIIVAGEAEE---------------- 162 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTT---CCCEEEESCCTT----------------
T ss_pred EEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhcccc---ccceeeeecccc----------------
Confidence 999999999999999999999999999864322 11111222211 122222221111
Q ss_pred ccchhhHhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCCCCCCCEEEEecCchhhhh
Q 044926 166 FFSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWSVPTQPVYLWTLPMFHSNG 245 (569)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~~~~g 245 (569)
...+++.... .....+..++|+++|+|||||||.||+|.+||+++...+......+++..+|++++..|++|.++
T Consensus 163 -~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 237 (536)
T d1mdba_ 163 -FLPLEDLHTE----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYP 237 (536)
T ss_dssp -SEEGGGCCCC----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhcccC----CcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccc
Confidence 1222222111 11223356789999999999999999999999999999999999999999999999999999998
Q ss_pred hhH--HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHH
Q 044926 246 WCF--PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVL 323 (569)
Q Consensus 246 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~ 323 (569)
+.. .......|.+.+..+.+++..++..+.+++++.+..+|..+..+...........+ +++.+++||+++++...
T Consensus 238 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gG~~~~~~~~ 315 (536)
T d1mdba_ 238 LSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLS--SLQVLQVGGAKFSAEAA 315 (536)
T ss_dssp HHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCT--TCCEEEEESSCCCHHHH
T ss_pred eeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccC--cceeEEEeccccccccc
Confidence 764 33333445666666779999999999999999999999999988877655655665 99999999999999999
Q ss_pred HHHH-hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEE
Q 044926 324 LRTE-SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIV 402 (569)
Q Consensus 324 ~~~~-~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 402 (569)
+++. .++......|+.+|.+..+.... .........+|.|..+...+.+.+ +++..++.+ +.|||+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~p~~~~~~~~v~~-~~g~~~~~~--~~Gel~ 382 (536)
T d1mdba_ 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLD----------DPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPG--ETGHLL 382 (536)
T ss_dssp TTHHHHTCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTT--CCEEEE
T ss_pred cchhhccCceeeeccccccccccccccc----------cccccccCCcccCCCCcceEEEEc-CCCCeeccc--ccceee
Confidence 9888 57999999999999865554432 112234567899988874555555 588888887 899999
Q ss_pred EecCcccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEe
Q 044926 403 LRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVA 482 (569)
Q Consensus 403 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 482 (569)
++|+.++.||++++..+...+..++||+|||++++++||++++.||.+|+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 383 v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg 462 (536)
T d1mdba_ 383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462 (536)
T ss_dssp EECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred cCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence 99999999999999988888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEEecCCCCCCCCHHHHHHHHhcc-CCCCccccEEEEecccCCCCCCcccHHHHHHHHHh
Q 044926 483 RPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGR-LPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAEN 553 (569)
Q Consensus 483 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 553 (569)
.+++..|+.++++|+..++. ...++|+++++++ |+.+++|..++++++||+|++|||+|++|++++++
T Consensus 463 ~~~~~~g~~~~a~v~~~~~~---~~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (536)
T d1mdba_ 463 MPDQFLGERSCVFIIPRDEA---PKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (536)
T ss_dssp EEETTTEEEEEEEEEESSSC---CCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred EEcCCCCeEEEEEEEECCCC---CCHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHH
Confidence 99888888899999987654 4788999999875 99999999999999999999999999999999864
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.7e-65 Score=533.05 Aligned_cols=493 Identities=24% Similarity=0.319 Sum_probs=399.8
Q ss_pred CchHHHHHHHHHHcCCCCeEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhccceE
Q 044926 14 LTPLVFLERAATVYGDSPSIIYN--NITYTWSDTHHRCLQLASSLLSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVL 91 (569)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~v~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 91 (569)
-||+++|+++|+++||++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 38999999999999999999985 4699999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHhhcCCeEEEEccccHHHHHHHHhcCCCCCCCCCEEEEeCCCcccccccCCCCCCCCCcccchhh
Q 044926 92 NTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLISDDDDAAVSSQSHHPNISDDQFFSTYE 171 (569)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
+|++|.++.+++.+++++++++++|++...... ........ ...++.+.+......
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~----~~~~i~~~~~~~~~~------------------- 137 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA-DAIFQSGS----GARIIFLGDLVRDGE------------------- 137 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHH-HHHHHTTC----CCEEEEHHHHEETTE-------------------
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHH-HHHhhhcc----ccccccchhhhhhhc-------------------
Confidence 999999999999999999999999998764322 22222221 244444332111000
Q ss_pred HhhhcCCCCcccCCCCCCCCceEEEecCCCCCCCceEEEchHHHHHHHhhhhccCC--CCCCCEEEEecCchhhhhhhH-
Q 044926 172 SLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTLSDWS--VPTQPVYLWTLPMFHSNGWCF- 248 (569)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~--~~~~d~~~~~~pl~~~~g~~~- 248 (569)
.............+++++++++|||||||.||+|.++|.++..........+. ....++++..+|++|..+...
T Consensus 138 ---~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 214 (503)
T d3cw9a1 138 ---PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214 (503)
T ss_dssp ---ECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTT
T ss_pred ---ccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccc
Confidence 00000111112356789999999999999999999999999988877776654 456689999999988777665
Q ss_pred HHHHHHhCceEEEeccCCHHHHHHHHHHhCcceeechhHHHHHHHcCCCCCCCCCCcCCCceEEEeCCCCcHHHHHHHH-
Q 044926 249 PWAMAAVGGTNICIRKFDASIIFDLIRRHGVTHMCGAPVVLNMLSNYRDPDKKPLKLAKPVHLVTAGAPPPAAVLLRTE- 327 (569)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~l~~~~~~g~~l~~~~~~~~~- 327 (569)
.+.....++.+++.+.+++..++..+.+++++.+..+|..+..+.............+++|.+++||++++++....+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~ 294 (503)
T d3cw9a1 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQ 294 (503)
T ss_dssp HHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred cccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccc
Confidence 5556677778888888999999999999999999999998887766543333344444999999999999999998887
Q ss_pred hcCCeeeecccccccccceeecccccccccCcHHHHhhhhcccCcccccceeeEEeCCCCCcccCCCCCceeEEEEec-C
Q 044926 328 SLGFKVSHGYGLTETGGIVVSCAWKRNWNLLPAAEKAKLKARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRG-G 406 (569)
Q Consensus 328 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~-~ 406 (569)
.++..+.+.||++|++..+......... ....+.+.+ . .........+..++.| +.|++++.+ +
T Consensus 295 ~~~~~~~~~yg~~e~~~~~~~~~~~~~~-----------~~~~~~~~~-~-~~~~~~~~~~~~~~~g--~~g~~~~~~~~ 359 (503)
T d3cw9a1 295 HLPGEKVNIYGTTEAMNSLYMRQPKTGT-----------EMAPGFFSE-V-RIVRIGGGVDEIVANG--EEGELIVAASD 359 (503)
T ss_dssp HCCSEEEEEEEETTTEEEEEEESCSSSS-----------EEBCCTTCC-E-EEECTTSCTTCBCCTT--CCEEEEEECCT
T ss_pred cccccccccccccccceeeeeccccccc-----------ccccccccc-c-eeeeeecccCcccCCC--ccccccccccc
Confidence 5688999999999997766654432211 112222222 2 3333444577777777 778887765 5
Q ss_pred cccccccCCccccccccCCCCeeeecceEEEecCCcEEEeccCCCeEEeCceeeeHHHHHHHHHcCCCcceeEEEecCCC
Q 044926 407 CIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYSNPAVNEAAVVARPDE 486 (569)
Q Consensus 407 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~~~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 486 (569)
....||++++..+...|. +|||+|||+|++++||.+++.||.+|+||++|++|+|.+||+.|.++|+|.+|+|++.+++
T Consensus 360 ~~~~~~~~~~~~t~~~~~-~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~ 438 (503)
T d3cw9a1 360 SAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438 (503)
T ss_dssp TSCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred cccccccCChhhhHHHhc-CCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECC
Confidence 667788888888888786 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEEEEecCCCCCCCCHHHHHHHHh-ccCCCCccccEEEEecccCCCCCCcccHHHHHHHH
Q 044926 487 FWGETPCAFVSLKEGSKSKPTEKEMIEYCR-GRLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIA 551 (569)
Q Consensus 487 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~~~~~iP~t~~GKi~r~~l~~~~ 551 (569)
.+|+.++++|+..++.. .+.++++++++ ++|+.|++|+.|+++++||+|++|||+|++|++++
T Consensus 439 ~~g~~~~a~v~~~~~~~--~~~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 439 RWGQSVTACVVPRLGET--LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp TTEEEEEEEEEECTTCC--CCHHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred CCCeEEEEEEEeCCCCC--CCHHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 88889999999987765 78899999995 78999999999999999999999999999999875
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=82.93 E-value=1.8 Score=41.64 Aligned_cols=94 Identities=9% Similarity=-0.016 Sum_probs=67.7
Q ss_pred EEecCCCCCCCceEEEchHHHHHHHhhhhc---cCCCCCCCEEEEecCchhhhhhhHHHHHHHhCceEEEec-cCCHHHH
Q 044926 195 LNYTSGTTMSPKGVVHCHRGIFIVAVNTLS---DWSVPTQPVYLWTLPMFHSNGWCFPWAMAAVGGTNICIR-KFDASII 270 (569)
Q Consensus 195 i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~ 270 (569)
+.++.+.++ ..+|++.+...+..++. ..++.++|++....+.... .....++++..|+..+.++ ..+.+.+
T Consensus 37 ~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e-~~v~~lA~~~~G~i~vpl~~~~~~~~l 111 (541)
T d1lcia_ 37 IAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNEREL 111 (541)
T ss_dssp EEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS-THHHHHHHHHHTCEEEECCTTCCHHHH
T ss_pred EEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCeEEEecCCCCCHHHH
Confidence 344444443 45899998776665554 4589999999888775432 2334567777888877775 4788999
Q ss_pred HHHHHHhCcceeechhHHHHHHH
Q 044926 271 FDLIRRHGVTHMCGAPVVLNMLS 293 (569)
Q Consensus 271 ~~~l~~~~~t~~~~~P~~l~~l~ 293 (569)
...++..+++.+++....+..+.
T Consensus 112 ~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T d1lcia_ 112 LNSMNISQPTVVFVSKKGLQKIL 134 (541)
T ss_dssp HHHHHHHCCSEEEECGGGHHHHH
T ss_pred HHHHHhccceEEeeeccccccch
Confidence 99999999999999887766554
|