Citrus Sinensis ID: 044927

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
Protein Sequence
MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEccccEEEEEccccccHHHHHHHHHHHHccccccEEEccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEEccEEEEccccHHHHccccHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEEEcccccccEEEcEEEEEccccEEEEEccccccHHHHHHHHHHHccccccEEEEccccHHHccHHHHHHHHcccccccEEEcccHHHHHHccccccHHHHHHHHHHHcHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEEEccccccccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHccccHHHHcc
Coil and Loop (DISEMBL)
mlqvssdmstmdfdlpsaislsaaattDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVdtdarlffhsNAATEWLVLRIEALQNLIILTAALLIVLlpgkhlpgfvGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRqfmhlppeppaiieetkppaswpshgrieledlkvryrpntplvlkgitctfkegtrvgvvgrtgsgkTTLISALFRlvepengrilIDGLDICSMGLKDlrtklsiipqeptlfrgsvrtnldplgmysdNEIWEAMEKCQLKATisrlpmlldssvsdegenwsvGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIreefpgstvitvahrvptitdsdmFMVLSYGELveydlpsklmeTNSAFSKLVAEYRSSYKRNSMQD
Flexible Loop (DISEMBL)
MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIieetkppaswpsHGRIEledlkvryrpnTPLVLkgitctfkegtrvgvvgrtgsgktTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKlsiipqeptlfrgsvrtnldpLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVldeatasidsaTDAILQRIIreefpgstvitvahrvptitdsDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYrssykrnsmqd
Low Complexity Region (SEG)
MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEalqnliiltaallivllPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEgtrvgvvgrtgsgkttLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD
Disordered region (IsUnstruct)
*****************AISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL*********************RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME****F******************
Disordered Region (DISOPRED)
MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP**********SWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK****************
Disordered Region (DISEMBL)
*********TMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD
Disordered Region (DISPRO)
**QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSY*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	467	2.2.26 [Sep-21-2011]
Q8LGU1	1464	ABC transporter C family	yes	no	1.0	0.318	0.690	0.0
Q9LYS2	1453	ABC transporter C family	no	no	0.982	0.315	0.533	1e-146
Q9LK62	1493	ABC transporter C family	no	no	0.993	0.310	0.485	1e-134
Q9LK64	1514	ABC transporter C family	no	no	0.980	0.302	0.497	1e-133
Q8VZZ4	1466	ABC transporter C family	no	no	0.989	0.315	0.480	1e-131
Q9LZJ5	1539	ABC transporter C family	no	no	0.972	0.294	0.505	1e-130
Q7DM58	1516	ABC transporter C family	no	no	0.972	0.299	0.501	1e-128
Q7GB25	1514	ABC transporter C family	no	no	0.970	0.299	0.483	1e-126
Q9M1C7	1506	ABC transporter C family	no	no	0.980	0.304	0.471	1e-125
Q7FB56	1053	Putative ABC transporter	no	no	0.980	0.434	0.467	1e-123

>sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/468 (69%), Positives = 394/468 (84%), Gaps = 1/468 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD++ +D+D+P A     A   ++   + +M  VTW V+I+A+  +   K +Q Y
Sbjct: 994  LTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMTYVTWQVIIIALLALAATKVVQDY 1053

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            YL+SAREL+R+NGTTKAP++N+AAETS GVV+IRAF   + FF+NYL LVD DA LFF S
Sbjct: 1054 YLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAERFFKNYLNLVDADAVLFFLS 1113

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWY 179
            NAA EW++LRIE LQN+ + T ALL++L+P  ++ PG VGLSLSYALTL+  QV +TRWY
Sbjct: 1114 NAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPGLVGLSLSYALTLTQTQVFLTRWY 1173

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            C LSN+I+SVERI+Q+M++P EPPAII++ +PP+SWPS+G I L++LK+RYRPN PLVLK
Sbjct: 1174 CTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWPSNGTIHLQELKIRYRPNAPLVLK 1233

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GI+CTF+EGTRVGVVGRTGSGK+TLISALFRLVEP +G ILIDG+DI  +GLKDLR KLS
Sbjct: 1234 GISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCILIDGIDISKIGLKDLRMKLS 1293

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQEPTLFRG +RTNLDPLG+YSD+EIW+A+EKCQLK TIS LP  LDSSVSDEGENWS
Sbjct: 1294 IIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALEKCQLKTTISNLPNKLDSSVSDEGENWS 1353

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
            VGQRQLFCLGRVLLKRN+ILVLDEATASIDSATDAI+QRIIREEF   TVITVAHRVPT+
Sbjct: 1354 VGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAIIQRIIREEFADCTVITVAHRVPTV 1413

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD 467
             DSDM MVLS+G+LVEY+ PSKLMET+S FSKLVAEY +S + NS Q+
Sbjct: 1414 IDSDMVMVLSFGDLVEYNEPSKLMETDSYFSKLVAEYWASCRGNSSQN 1461

Pump for glutathione S-conjugates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4

>sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/461 (53%), Positives = 333/461 (72%), Gaps = 2/461 (0%)

Query: 3    QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
            +VSSD+S +D D+P  +    A++ +    + V+A VTW VL V++P V +A  +Q YY 
Sbjct: 988  RVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYF 1047

Query: 63   SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
             +A+ELMR+NGTT++ + N  AE+  G ++IRAF   + FF+  L L+DT+A  FFHS A
Sbjct: 1048 QTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFA 1107

Query: 123  ATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
            A EWL+ R+E +  +++ + A  ++LLP G    GF+G++LSY L+L+   V   +  C 
Sbjct: 1108 ANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCY 1167

Query: 182  LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
            L+N I+SVER+ Q+ HL PE P +IEET+PP +WP  GR+E+ DL++RYR  +PLVLKGI
Sbjct: 1168 LANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGI 1227

Query: 242  TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
            +CTF+ G ++G+VGRTGSGKTTLISALFRLVEP  G+I++DG+DI  +G+ DLR++  II
Sbjct: 1228 SCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGII 1287

Query: 302  PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
            PQ+PTLF G+VR NLDPL  +SD EIWE + KCQLK  +      LDS V ++G NWS+G
Sbjct: 1288 PQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMG 1347

Query: 362  QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
            QRQLFCLGR +L+R+R+LVLDEATASID+ATD ILQ+ IR EF   TVITVAHR+PT+ D
Sbjct: 1348 QRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVMD 1407

Query: 422  SDMFMVLSYGELVEYDLPSKLM-ETNSAFSKLVAEYRSSYK 461
              M + +S G +VEYD P KLM + NS F KLV EY S Y 
Sbjct: 1408 CTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYWSHYN 1448

Pump for glutathione S-conjugates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1

 Score =  479 bits (1234), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/470 (48%), Positives = 334/470 (71%), Gaps = 6/470 (1%)

Query: 3    QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
            + S+D S +D  LPS  S  A A  ++  II VM  V W VLIV IP +    + + YY+
Sbjct: 1022 RASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYI 1081

Query: 63   SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
            S+AREL R++G +++P+V   +ET  G+ +IR+F     F  + ++L D  +RL FH+ +
Sbjct: 1082 SAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAIS 1141

Query: 123  ATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
            A EWL  R++ L  +    + +++V +P G   P F GL+++YAL L+S+Q  +    C+
Sbjct: 1142 AMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCD 1201

Query: 182  LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
            L N ++SVER+ Q++ +P EP  +IE T+P  SWP  G I + +L+VRY P+ P+VL+G+
Sbjct: 1202 LENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGL 1261

Query: 242  TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
            TCTF+ G + G+VGRTG GK+TLI  LFR+VEP  G I IDG++I ++GL DLR++LSII
Sbjct: 1262 TCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSII 1321

Query: 302  PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
            PQEPT+F G+VR+NLDPL  Y+D++IWEA++KCQL   I +  + LDS VS+ G+NWSVG
Sbjct: 1322 PQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVG 1381

Query: 362  QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
            QRQL CLGRVLLKR+++L+LDEATAS+D+ATD ++Q  +R+ F G TVIT+AHR+ ++ D
Sbjct: 1382 QRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVID 1441

Query: 422  SDMFMVLSYGELVEYDLPSKLME-TNSAFSKLVAEYRSS----YKRNSMQ 466
            SDM ++L  G + E+D P++L+E  +S+FSKLVAEY +S    +KR+SM+
Sbjct: 1442 SDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSDSRFKRSSMK 1491

Pump for glutathione S-conjugates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1

 Score =  474 bits (1220), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/460 (49%), Positives = 322/460 (70%), Gaps = 2/460 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            M + S+D S +D +LP      A     +  II VM+ V+W V +V IP V  + + Q Y
Sbjct: 1048 MSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRY 1107

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            Y+++AREL R+ G  KAP++   +ET  G  +IR+F     F  + ++L D  +R  F++
Sbjct: 1108 YIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYT 1167

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWY 179
              A EWL  R++ L +L  + + + +V +P G   P   GL+++Y L+L+++Q  +    
Sbjct: 1168 AGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTL 1227

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNL N I+SVERI Q+  +P EPP +IE  +P  SWPS G +E+ DL+VRY P+ PLVL+
Sbjct: 1228 CNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLR 1287

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITCTFK G R G+VGRTGSGK+TLI  LFR+VEP  G I IDG++I ++GL DLR +LS
Sbjct: 1288 GITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLS 1347

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQ+PT+F G++R+NLDPL  Y+D++IWEA++KCQL   + +    LDSSVS+ G+NWS
Sbjct: 1348 IIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWS 1407

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
            +GQRQL CLGRVLLKR++ILVLDEATAS+D+ATD ++Q+ +RE F   TVIT+AHR+ ++
Sbjct: 1408 MGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHRISSV 1467

Query: 420  TDSDMFMVLSYGELVEYDLPSKLME-TNSAFSKLVAEYRS 458
             DSDM ++LS G + EYD P +L+E  +S+FSKLVAEY S
Sbjct: 1468 IDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTS 1507

Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/464 (48%), Positives = 320/464 (68%), Gaps = 2/464 (0%)

Query: 3    QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
            + S+D S  D  LP   +  A A  ++  II V+  V W VLIV IP V    + + YY+
Sbjct: 1000 RASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYI 1059

Query: 63   SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
            S+AREL R+ G +++P+V+  +ET  G+ +IR+F     F  + ++L D  +RL FHS  
Sbjct: 1060 SAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTG 1119

Query: 123  ATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
            A EWL  R+E L      ++ +++V  P G   P   GL+++YAL L+++Q  +    C+
Sbjct: 1120 AMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCD 1179

Query: 182  LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
            L N ++SVER+ Q+ ++P EPP +IE T+P  SWPS G I + +L+VRY P+ P+VL G+
Sbjct: 1180 LENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGL 1239

Query: 242  TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
            TCTF  G + G+VGRTG GK+TLI  LFR+VEP  G I IDG++I S+GL DLR++LSII
Sbjct: 1240 TCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSII 1299

Query: 302  PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
            PQ+PT+F G++R+NLDPL  Y+D++IWEA++ CQL   + +  + LDS VS+ G+NWSVG
Sbjct: 1300 PQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVG 1359

Query: 362  QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
            QRQL CLGRVLLKR+++LVLDEATASID+ATD ++Q  +R  F   TVIT+AHR+ ++ D
Sbjct: 1360 QRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVID 1419

Query: 422  SDMFMVLSYGELVEYDLPSKLMETNSA-FSKLVAEYRSSYKRNS 464
            SDM ++L  G + E+D P++L+E  S+ FSKLVAEY +S +  S
Sbjct: 1420 SDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSSESKS 1463

Pump for glutathione S-conjugates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1

 Score =  464 bits (1195), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/455 (50%), Positives = 318/455 (69%), Gaps = 1/455 (0%)

Query: 3    QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
            + S+D + +D  +P  I L A   T +  I  V     WP +   IP   +  + +GYYL
Sbjct: 1078 RASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYL 1137

Query: 63   SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
            +S+REL R++  TKAP+++  +E+  GV++IRAFK   MF +  +K V+ + R+ FH+N 
Sbjct: 1138 ASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNG 1197

Query: 123  ATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWYCN 181
            + EWL  R+E + + ++  +AL +V+LP   + P  VGLSLSY L+L+ +        C 
Sbjct: 1198 SNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCF 1257

Query: 182  LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
            + N +VSVERI+QF  +P E    I+E++PP +WP  G I LED+KVRYRPNTPLVLKG+
Sbjct: 1258 IENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGL 1317

Query: 242  TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
            T   K G ++GVVGRTGSGK+TLI  LFRLVEP  G+I+IDG+DIC++GL DLR++  II
Sbjct: 1318 TIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGII 1377

Query: 302  PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
            PQEP LF G+VR+N+DP   YSD EIW+++E+CQLK  ++  P  LDS V+D GENWSVG
Sbjct: 1378 PQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVG 1437

Query: 362  QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
            QRQL CLGRV+LKR+RIL LDEATAS+DS TDA++Q+IIRE+F   T+I++AHR+PT+ D
Sbjct: 1438 QRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMD 1497

Query: 422  SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
             D  +V+  G+  EYD P +L+E  S F+ LV EY
Sbjct: 1498 CDRVLVIDAGKAKEYDSPVRLLERQSLFAALVQEY 1532

Pump for glutathione S-conjugates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/455 (50%), Positives = 317/455 (69%), Gaps = 1/455 (0%)

Query: 3    QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
            + S+D + +D  +P  + L  +  T +  I  V     WP     IP   +  + + YYL
Sbjct: 1055 RASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYL 1114

Query: 63   SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
            +S+REL RM+  TKAPI++  +E+  GV++IR+F+  ++F +  +K V+ + R+ FH+N 
Sbjct: 1115 ASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNG 1174

Query: 123  ATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWYCN 181
            + EWL  R+E + + ++  +AL +VLLP   + P  VGLSLSY L+L+S+        C 
Sbjct: 1175 SNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCF 1234

Query: 182  LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
            + N +VSVERI+QF  +P E     +ET PP++WP HG + LEDLKVRYRPNTPLVLKGI
Sbjct: 1235 VENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGI 1294

Query: 242  TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
            T   K G +VGVVGRTGSGK+TLI  LFRLVEP  G+I+IDG+DI ++GL DLR++  II
Sbjct: 1295 TLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGII 1354

Query: 302  PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
            PQEP LF G+VR+N+DP   YSD EIW+++E+CQLK  ++  P  LDS V D GENWSVG
Sbjct: 1355 PQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVG 1414

Query: 362  QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
            QRQL CLGRV+LKR+R+L LDEATAS+DS TDA++Q+IIRE+F   T+I++AHR+PT+ D
Sbjct: 1415 QRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMD 1474

Query: 422  SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
             D  +V+  G+  E+D P++L+E  S F+ LV EY
Sbjct: 1475 GDRVLVIDAGKAKEFDSPARLLERPSLFAALVQEY 1509

Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/461 (48%), Positives = 312/461 (67%), Gaps = 8/461 (1%)

Query: 3    QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
            +VS D S +D D+P  +   A+ T  +  I++VM +VTW V ++ +P  +   ++Q YY+
Sbjct: 1049 RVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYM 1108

Query: 63   SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
            +S+REL+R+    K+PI++   E+  G  +IR F     F +  L L+D   R FF S A
Sbjct: 1109 ASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIA 1168

Query: 123  ATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRW--- 178
            A EWL LR+E L  L+     +L+V  P G   P   GL+++Y L L+     ++RW   
Sbjct: 1169 AIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGR---LSRWILS 1225

Query: 179  YCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238
            +C L N I+S+ERI Q+  +  E PAIIE+ +PP+SWP+ G IEL D+KVRY  N P VL
Sbjct: 1226 FCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVL 1285

Query: 239  KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298
             G++C F  G ++G+VGRTGSGK+TLI ALFRL+EP  G+I ID +DI  +GL DLR++L
Sbjct: 1286 HGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRL 1345

Query: 299  SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358
             IIPQ+PTLF G++R NLDPL  +SD++IWEA++K QL   +    + LDS V + G+NW
Sbjct: 1346 GIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNW 1405

Query: 359  SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT 418
            SVGQRQL  LGR LLK+ +ILVLDEATAS+D+ATD ++Q+IIR EF   TV T+AHR+PT
Sbjct: 1406 SVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPT 1465

Query: 419  ITDSDMFMVLSYGELVEYDLPSKLMETNSA-FSKLVAEYRS 458
            + DSD+ +VLS G + E+D P++L+E  S+ F KLV EY S
Sbjct: 1466 VIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSS 1506

Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2

 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/462 (47%), Positives = 309/462 (66%), Gaps = 4/462 (0%)

Query: 3    QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
            + S+D S +D ++   +   A +   +   I VM+ V W V ++ IP  +   + Q YY 
Sbjct: 1036 RASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYT 1095

Query: 63   SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
             +AREL RM+G  +API++  AE+  G  +IRAF   D F  + L L+D+ +R +FH  +
Sbjct: 1096 PTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVAS 1155

Query: 123  ATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
            A EWL  R+  L + +   + +L+V LP G   P   GL ++Y L+L+ +Q  +    CN
Sbjct: 1156 AMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICN 1215

Query: 182  LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
              N ++SVERI Q+  +P E P +I+  +P  +WP+ G I   DL+VRY  + P VLK I
Sbjct: 1216 AENKMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNI 1275

Query: 242  TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
            TC F  G ++GVVGRTGSGK+TLI ALFR+VEP  G I+ID +DI  +GL DLR++L II
Sbjct: 1276 TCEFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSRLGII 1335

Query: 302  PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
            PQ+P LF G++R NLDPL  Y+D+EIWEA++KCQL   I      LD++V + GENWSVG
Sbjct: 1336 PQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAKDERLDATVVENGENWSVG 1395

Query: 362  QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
            QRQL CLGRVLLK++ ILVLDEATAS+DSATD ++Q+II +EF   TV+T+AHR+ T+ +
Sbjct: 1396 QRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIE 1455

Query: 422  SDMFMVLSYGELVEYDLPSKLME-TNSAFSKLVAEY--RSSY 460
            SD+ +VLS G + E+D P+KL++  +S FSKL+ EY  RS++
Sbjct: 1456 SDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSNH 1497

Pump for glutathione S-conjugates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

>sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/462 (46%), Positives = 307/462 (66%), Gaps = 4/462 (0%)

Query: 3    QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
            + S+D S +D ++   +   A +   +   I VM+ V W V ++ IP  +   + Q YY 
Sbjct: 583  RASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYT 642

Query: 63   SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
             + REL RM+G  +API++  AE+  G  +IRAF   D F  + L L+D+ +R +FH  +
Sbjct: 643  PTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVAS 702

Query: 123  ATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
            A EWL  R+  L + +   + +L+V LP G   P   GL ++Y L+L+ +Q  +    CN
Sbjct: 703  AMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICN 762

Query: 182  LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
              N ++SVERI Q   +P E P +I++ +P  +WP+ G I   DL+VRY  + P VLK I
Sbjct: 763  AENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNI 822

Query: 242  TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
            TC F  G ++GVVGRTGSGK+TLI ALFR+VEP +G I+ID +DI  +GL DLR++L II
Sbjct: 823  TCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIVIDNVDITKIGLHDLRSRLGII 882

Query: 302  PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
            PQ+  LF G++R NLDPL  Y+D EIWEA++KCQL   I      LD++V + GENWSVG
Sbjct: 883  PQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDVIRAKDEKLDATVVENGENWSVG 942

Query: 362  QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
            QRQL CLGRVLLK++ ILVLDEATAS+DSATD ++Q+II +EF   TV+T+AHR+ T+ +
Sbjct: 943  QRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIE 1002

Query: 422  SDMFMVLSYGELVEYDLPSKLME-TNSAFSKLVAEY--RSSY 460
            SD+ +VLS G + E+D P+KL++  +S FSKL+ EY  RS++
Sbjct: 1003 SDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSNH 1044

Pump for glutathione S-conjugates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
224134963	1253	multidrug resistance protein ABC transpo	1.0	0.372	0.747	0.0
356526035	1465	PREDICTED: ABC transporter C family memb	0.993	0.316	0.733	0.0
359482526	1469	PREDICTED: ABC transporter C family memb	1.0	0.317	0.767	0.0
297743104	2772	unnamed protein product [Vitis vinifera]	1.0	0.168	0.767	0.0
359482524	1462	PREDICTED: ABC transporter C family memb	0.993	0.317	0.754	0.0
356522202	1951	PREDICTED: ABC transporter C family memb	0.997	0.238	0.721	0.0
255572985	1475	multidrug resistance-associated protein	1.0	0.316	0.730	0.0
297743105	1094	unnamed protein product [Vitis vinifera]	0.997	0.425	0.753	0.0
359482528	1465	PREDICTED: ABC transporter C family memb	0.997	0.318	0.753	0.0
357515285	1306	Multidrug resistance protein ABC transpo	0.995	0.356	0.712	0.0

>gi|224134963|ref|XP_002327533.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222836087|gb|EEE74508.1| multidrug resistance protein ABC transporter family [Populus trichocarpa]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/468 (74%), Positives = 411/468 (87%), Gaps = 1/468 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + Q SSD+S +DFD+P A    AA  T++   I +MASVTW VLIVAI  +  +KY+QGY
Sbjct: 784  VFQASSDLSVLDFDIPFAFIFVAAPLTELLATIGIMASVTWQVLIVAILAMAASKYVQGY 843

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            YL+SAREL+R+NGTTKAP++N+AAETS GVV+IRAFKM+D FF+NYLKLVD DA LFFHS
Sbjct: 844  YLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFKMVDRFFQNYLKLVDNDAVLFFHS 903

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHLP-GFVGLSLSYALTLSSIQVIMTRWY 179
            N A EWLV+R EA+QN+ + TAALL++LLP  ++P G VGLSLSYAL+L+  QV MTRWY
Sbjct: 904  NGAMEWLVIRTEAIQNMTLFTAALLLILLPKGYVPPGLVGLSLSYALSLTGTQVFMTRWY 963

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNL+N I+SVERI+QFM++PPEPPA++E+ +PP+SWP  GRIEL++LK+RYRPN PLVLK
Sbjct: 964  CNLANYIISVERIKQFMNIPPEPPAVVEDKRPPSSWPFSGRIELQELKIRYRPNAPLVLK 1023

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GI CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE+G+ILIDGLDICSMGLKDLR KLS
Sbjct: 1024 GINCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPESGKILIDGLDICSMGLKDLRMKLS 1083

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQEPTLFRGS+RTNLDPLG++SD EIWEA++KCQLKATIS LP LLDSSVSDEGENWS
Sbjct: 1084 IIPQEPTLFRGSIRTNLDPLGLHSDQEIWEALDKCQLKATISSLPHLLDSSVSDEGENWS 1143

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
             GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR EF   TVITVAHRVPT+
Sbjct: 1144 AGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRREFSDCTVITVAHRVPTV 1203

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD 467
             DSDM MVLSYG+L+EY  P+KL+ETNS+FSKLVAEY +S +++S ++
Sbjct: 1204 IDSDMVMVLSYGKLLEYGEPTKLLETNSSFSKLVAEYWASCRQHSHRN 1251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526035|ref|XP_003531625.1| PREDICTED: ABC transporter C family member 8-like [Glycine max]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/465 (73%), Positives = 409/465 (87%), Gaps = 1/465 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD+S +DFD+P +I+  A+   ++ + I +MA VTWPVLIVAIP ++ +KY+QGY
Sbjct: 992  LTRASSDLSILDFDIPYSITFVASVGLEIMVTICIMALVTWPVLIVAIPAMVASKYVQGY 1051

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            Y +SARELMR+NGTTKAP++NFAAETS GVV++RAF M ++FF NYLKLVDTDA LFFHS
Sbjct: 1052 YQASARELMRINGTTKAPVMNFAAETSLGVVTVRAFNMTEIFFRNYLKLVDTDAALFFHS 1111

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWY 179
            N A EWLVLRIEALQNL ++T+ALL++++P  ++  G VGLSLSYA +L+  Q+  TRWY
Sbjct: 1112 NVAMEWLVLRIEALQNLTVITSALLLIIVPQGYVTSGLVGLSLSYAFSLTGSQIFWTRWY 1171

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNL N I+SVERI+QF+HLP EPPAI+E+ +PP+SWPS GRI+L+ L++RYRPN PLVLK
Sbjct: 1172 CNLLNYIISVERIKQFIHLPVEPPAILEDHRPPSSWPSKGRIDLQALEIRYRPNAPLVLK 1231

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITCTFKEG+RVGVVGRTGSGK+TLISALFRLV+P  G ILIDG++ICS+GLKDLR KLS
Sbjct: 1232 GITCTFKEGSRVGVVGRTGSGKSTLISALFRLVDPAKGYILIDGINICSIGLKDLRMKLS 1291

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQEPTLF+GS+RTNLDPLG+YSD+EIWEA+EKCQLK TISRLP LLDSSVSDEG NWS
Sbjct: 1292 IIPQEPTLFKGSIRTNLDPLGLYSDDEIWEALEKCQLKETISRLPNLLDSSVSDEGGNWS 1351

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
            +GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ+IIR+EF   TVITVAHRVPT+
Sbjct: 1352 LGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQIIRQEFVECTVITVAHRVPTV 1411

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNS 464
             DSDM MVLSYG+LVEY+ PS+LMETNS+FSKLVAEY SS ++NS
Sbjct: 1412 IDSDMVMVLSYGKLVEYEEPSRLMETNSSFSKLVAEYWSSCRKNS 1456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482526|ref|XP_002276212.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/468 (76%), Positives = 412/468 (88%), Gaps = 1/468 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD S +DFD+P +I    AA  ++   I +MASVTW VL VAI  ++ A Y+QGY
Sbjct: 997  LTRASSDFSVVDFDIPFSIIFVVAAGLELITTIGIMASVTWQVLFVAIFAMVTANYVQGY 1056

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            YL+SAREL+R+NGTTKAP++N+AAETS GVV+IRAFKM+D FF+NYL+L+DTDA+LFF+S
Sbjct: 1057 YLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFKMVDRFFQNYLELIDTDAKLFFYS 1116

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWY 179
            NAA EWLVLRIE LQNL ++TAALL+VLLP G  +PG VGLSLSYAL L+  QV ++RWY
Sbjct: 1117 NAAIEWLVLRIEMLQNLTLVTAALLLVLLPKGVVVPGLVGLSLSYALALTGSQVFLSRWY 1176

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNLSN IVSVERI+QFM +PPEPPAI+E  +PP+SWPS GRIEL++LK++YRPN PLVLK
Sbjct: 1177 CNLSNYIVSVERIKQFMRIPPEPPAIVEGKRPPSSWPSKGRIELQNLKIKYRPNAPLVLK 1236

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE+G+ILIDGLDICS+GLKDLR KLS
Sbjct: 1237 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPESGKILIDGLDICSIGLKDLRMKLS 1296

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQE TLF+GS+RTNLDPLG+YSDNEIWEA+EKCQLKATIS LP LLDSSVSDEGENWS
Sbjct: 1297 IIPQEATLFKGSIRTNLDPLGLYSDNEIWEALEKCQLKATISSLPNLLDSSVSDEGENWS 1356

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
             GQRQLFCLGRVLLKRNRILVLDEATASID+ATDAILQRIIR+EF   TVITVAHRVPT+
Sbjct: 1357 AGQRQLFCLGRVLLKRNRILVLDEATASIDAATDAILQRIIRQEFLNCTVITVAHRVPTV 1416

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD 467
             DSDM MVLSYG+LVEYD PS LMETNS FSKLVAEY SS +RNS Q+
Sbjct: 1417 IDSDMVMVLSYGKLVEYDEPSNLMETNSFFSKLVAEYWSSRRRNSSQN 1464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743104|emb|CBI35971.3| unnamed protein product [Vitis vinifera]

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/468 (76%), Positives = 412/468 (88%), Gaps = 1/468 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD S +DFD+P +I    AA  ++   I +MASVTW VL VAI  ++ A Y+QGY
Sbjct: 2300 LTRASSDFSVVDFDIPFSIIFVVAAGLELITTIGIMASVTWQVLFVAIFAMVTANYVQGY 2359

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            YL+SAREL+R+NGTTKAP++N+AAETS GVV+IRAFKM+D FF+NYL+L+DTDA+LFF+S
Sbjct: 2360 YLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFKMVDRFFQNYLELIDTDAKLFFYS 2419

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWY 179
            NAA EWLVLRIE LQNL ++TAALL+VLLP G  +PG VGLSLSYAL L+  QV ++RWY
Sbjct: 2420 NAAIEWLVLRIEMLQNLTLVTAALLLVLLPKGVVVPGLVGLSLSYALALTGSQVFLSRWY 2479

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNLSN IVSVERI+QFM +PPEPPAI+E  +PP+SWPS GRIEL++LK++YRPN PLVLK
Sbjct: 2480 CNLSNYIVSVERIKQFMRIPPEPPAIVEGKRPPSSWPSKGRIELQNLKIKYRPNAPLVLK 2539

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE+G+ILIDGLDICS+GLKDLR KLS
Sbjct: 2540 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPESGKILIDGLDICSIGLKDLRMKLS 2599

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQE TLF+GS+RTNLDPLG+YSDNEIWEA+EKCQLKATIS LP LLDSSVSDEGENWS
Sbjct: 2600 IIPQEATLFKGSIRTNLDPLGLYSDNEIWEALEKCQLKATISSLPNLLDSSVSDEGENWS 2659

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
             GQRQLFCLGRVLLKRNRILVLDEATASID+ATDAILQRIIR+EF   TVITVAHRVPT+
Sbjct: 2660 AGQRQLFCLGRVLLKRNRILVLDEATASIDAATDAILQRIIRQEFLNCTVITVAHRVPTV 2719

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD 467
             DSDM MVLSYG+LVEYD PS LMETNS FSKLVAEY SS +RNS Q+
Sbjct: 2720 IDSDMVMVLSYGKLVEYDEPSNLMETNSFFSKLVAEYWSSRRRNSSQN 2767

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482524|ref|XP_002276193.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera]

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/465 (75%), Positives = 414/465 (89%), Gaps = 1/465 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD++ +D ++P +I    +A  D+   I +MASVTWPVLIVAI  ++ AKY+QGY
Sbjct: 998  LTRASSDLTVLDSNIPFSIIFVLSAGIDILTTIGIMASVTWPVLIVAIFAMVAAKYVQGY 1057

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            YL+SAREL+R+NGTTKAP++N+AAE+S GVV+IRAF M+D FF+NYLKL+DTDA+LFF+S
Sbjct: 1058 YLASARELIRINGTTKAPVMNYAAESSLGVVTIRAFNMVDRFFQNYLKLIDTDAKLFFYS 1117

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWY 179
            NAA EWLVLRIEALQNL ++TAALL+VLLP  ++ PG VGLSLSYAL L+  QV+++RWY
Sbjct: 1118 NAAMEWLVLRIEALQNLTLVTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVMLSRWY 1177

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNLSN +VSVERI+QFMH+P EPPAI++  +PP+SWPS GRIEL++LK++YRPN+PLVLK
Sbjct: 1178 CNLSNYMVSVERIKQFMHIPSEPPAIVDGKRPPSSWPSKGRIELQNLKIKYRPNSPLVLK 1237

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITC FKEGTRVGVVGRTGSGKTTLISALFRLVEPE+G IL+DGLDICS+GLKDLR KLS
Sbjct: 1238 GITCIFKEGTRVGVVGRTGSGKTTLISALFRLVEPESGTILVDGLDICSIGLKDLRMKLS 1297

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQEPTLF+GS+RTNLDPLG+YS+NEIW+A+EKCQLKATIS LP LLDSSVSDEGENWS
Sbjct: 1298 IIPQEPTLFKGSIRTNLDPLGLYSENEIWKALEKCQLKATISSLPNLLDSSVSDEGENWS 1357

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
             GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR+EF   TVITVAHRVPT+
Sbjct: 1358 AGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1417

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNS 464
             DSDM MVLSYG+LVEYD PS LM+TNS+FSKLV EY SS +RNS
Sbjct: 1418 MDSDMVMVLSYGKLVEYDKPSNLMDTNSSFSKLVGEYWSSSRRNS 1462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522202|ref|XP_003529736.1| PREDICTED: ABC transporter C family member 8-like [Glycine max]

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/467 (72%), Positives = 409/467 (87%), Gaps = 1/467 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD++ +DFD+P +I+  A+   ++ +II +M  VTW VLIVA+P ++ +KY+QGY
Sbjct: 1477 LTRASSDLTILDFDIPFSITFVASVPIEILMIIGIMVYVTWQVLIVAVPAMVASKYVQGY 1536

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            Y +SAREL+R+NGTTKAP++NFAAETS G+V++RAF M D FF+NYLKLVDTDA LFF+S
Sbjct: 1537 YQASARELIRINGTTKAPVMNFAAETSLGLVTVRAFNMADRFFKNYLKLVDTDAALFFYS 1596

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWY 179
            NAA EWLVLRIE LQNL ++TAALL+VL+P  ++ PG VGLSLSY  TL+  Q+ +TRWY
Sbjct: 1597 NAAMEWLVLRIETLQNLTVITAALLLVLVPQGYVSPGLVGLSLSYTFTLTGTQIFLTRWY 1656

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNL N I+SVERI+QF+ LP EPPAI+E+ +PP+SWPS GRI+L+ L++RYRPN PLVLK
Sbjct: 1657 CNLLNYIISVERIKQFIQLPEEPPAIVEDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLK 1716

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITCTFKEG+RVGVVGRTGSGK+TLISALFRLVEP +G ILIDG++ICS+GLKDL+ KLS
Sbjct: 1717 GITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPASGDILIDGINICSIGLKDLKIKLS 1776

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQEPTLF+GS+RTNLDPLG+YSD+++W+A+EKCQLK TISRLP LLDS VSDEG NWS
Sbjct: 1777 IIPQEPTLFKGSIRTNLDPLGLYSDDDLWKALEKCQLKETISRLPNLLDSLVSDEGGNWS 1836

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
            +GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ+IIR+EF   TVITVAHRVPT+
Sbjct: 1837 LGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQIIRQEFAKCTVITVAHRVPTV 1896

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQ 466
             DSDM MVLSYG+LVEYD PSKLM+TNS+FSKLVAEY SS ++NS Q
Sbjct: 1897 IDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSPQ 1943

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572985|ref|XP_002527423.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] gi|223533233|gb|EEF34989.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis]

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/468 (73%), Positives = 403/468 (86%), Gaps = 1/468 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD+S +DFD+P +   +A    ++ + I +MASVTW VL++A+  ++ AKYIQ Y
Sbjct: 1004 LTRASSDLSILDFDIPFSYVFAAGGLVELVVTIGIMASVTWQVLVIAVLAIVGAKYIQDY 1063

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            YL+SAREL+R+NGTTKAP++N+AAETS GVV+IRAFKM++ FF+NYLKLVD DA LFF S
Sbjct: 1064 YLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFKMVNRFFQNYLKLVDKDAVLFFLS 1123

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLP-GKHLPGFVGLSLSYALTLSSIQVIMTRWY 179
            N A EWL++R EALQN+ + TAALL+VLLP G   PG +GLSLSYAL+L+  QV +TRWY
Sbjct: 1124 NGAMEWLIIRTEALQNVTLFTAALLLVLLPKGVVTPGLIGLSLSYALSLTGTQVFVTRWY 1183

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNL+N ++SVERI+QFMH+P EPPA++E+ +PP+SWP  GRIEL+DLK+RYRPN PLVLK
Sbjct: 1184 CNLANYVISVERIKQFMHIPSEPPAVVEDNRPPSSWPPEGRIELQDLKIRYRPNAPLVLK 1243

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GI C F+EGTRVGVVGRTGSGKTTLISALFRLVEP +GRILIDGLDICS+GL+DLRTKLS
Sbjct: 1244 GINCIFEEGTRVGVVGRTGSGKTTLISALFRLVEPASGRILIDGLDICSIGLRDLRTKLS 1303

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQE TLFRGSVRTNLDPLG+YSD EIWEA+EKCQLK TIS LP  LDSSVSDEGENWS
Sbjct: 1304 IIPQEATLFRGSVRTNLDPLGLYSDPEIWEALEKCQLKTTISSLPNQLDSSVSDEGENWS 1363

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
             GQRQLFCLGRVLL+RNRILVLDEATASIDSATDAILQRIIR+EF   TVITVAHRVPT+
Sbjct: 1364 AGQRQLFCLGRVLLRRNRILVLDEATASIDSATDAILQRIIRQEFSMCTVITVAHRVPTV 1423

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD 467
             DSDM MVLSYG+L EYD P KLME NS+FSKLVAEY SS +RNS ++
Sbjct: 1424 IDSDMVMVLSYGKLEEYDEPLKLMEINSSFSKLVAEYWSSCRRNSEKN 1471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743105|emb|CBI35972.3| unnamed protein product [Vitis vinifera]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/467 (75%), Positives = 409/467 (87%), Gaps = 1/467 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD+S +DFD+P +I    A+  ++  II V AS+TWPVLIVAI  ++   Y+QGY
Sbjct: 619  LTRASSDLSVLDFDIPFSIIFVVASGLELLSIIGVTASITWPVLIVAIFAIVAVYYVQGY 678

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            YL+SAREL+R+NGTTKAP++++AAETS GVV+IRAF M+D FF+NYL+L++TDA+LFF+S
Sbjct: 679  YLASARELIRINGTTKAPVMSYAAETSLGVVTIRAFNMVDRFFQNYLELIETDAKLFFYS 738

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWY 179
            NAA EWLVLRIE LQNL ++TAALL+VLLP  ++ PG VGLSLSYAL L+  QV  +RWY
Sbjct: 739  NAAIEWLVLRIEILQNLTLVTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVFFSRWY 798

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNLSN +VSVERI+QFMH+P EPPAI+EE +PP SWPS GRI+L+ LK++YRPN PLVLK
Sbjct: 799  CNLSNYVVSVERIKQFMHIPSEPPAIVEEKRPPTSWPSKGRIDLQYLKIKYRPNAPLVLK 858

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITCTFKEGTRVG+VGRTGSGKTTLISALFRLVEPE+G+I IDGLDICS+GLKDLR KLS
Sbjct: 859  GITCTFKEGTRVGIVGRTGSGKTTLISALFRLVEPESGKIFIDGLDICSIGLKDLRMKLS 918

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQEPTLF+GS+RTNLDPLG+YSD+EIWEA+EKCQLKATIS LP LLDS VSDEGENWS
Sbjct: 919  IIPQEPTLFKGSIRTNLDPLGLYSDDEIWEALEKCQLKATISSLPNLLDSYVSDEGENWS 978

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
             GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR+EF   TVITVAHRVPT+
Sbjct: 979  AGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFSNCTVITVAHRVPTL 1038

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQ 466
             DSDM MVLSYG+LVEYD PS LMETNS+FSKLVAEY SS  RNS Q
Sbjct: 1039 IDSDMVMVLSYGKLVEYDEPSNLMETNSSFSKLVAEYWSSCWRNSSQ 1085

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482528|ref|XP_002276236.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/467 (75%), Positives = 409/467 (87%), Gaps = 1/467 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD+S +DFD+P +I    A+  ++  II V AS+TWPVLIVAI  ++   Y+QGY
Sbjct: 990  LTRASSDLSVLDFDIPFSIIFVVASGLELLSIIGVTASITWPVLIVAIFAIVAVYYVQGY 1049

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            YL+SAREL+R+NGTTKAP++++AAETS GVV+IRAF M+D FF+NYL+L++TDA+LFF+S
Sbjct: 1050 YLASARELIRINGTTKAPVMSYAAETSLGVVTIRAFNMVDRFFQNYLELIETDAKLFFYS 1109

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWY 179
            NAA EWLVLRIE LQNL ++TAALL+VLLP  ++ PG VGLSLSYAL L+  QV  +RWY
Sbjct: 1110 NAAIEWLVLRIEILQNLTLVTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVFFSRWY 1169

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
            CNLSN +VSVERI+QFMH+P EPPAI+EE +PP SWPS GRI+L+ LK++YRPN PLVLK
Sbjct: 1170 CNLSNYVVSVERIKQFMHIPSEPPAIVEEKRPPTSWPSKGRIDLQYLKIKYRPNAPLVLK 1229

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITCTFKEGTRVG+VGRTGSGKTTLISALFRLVEPE+G+I IDGLDICS+GLKDLR KLS
Sbjct: 1230 GITCTFKEGTRVGIVGRTGSGKTTLISALFRLVEPESGKIFIDGLDICSIGLKDLRMKLS 1289

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQEPTLF+GS+RTNLDPLG+YSD+EIWEA+EKCQLKATIS LP LLDS VSDEGENWS
Sbjct: 1290 IIPQEPTLFKGSIRTNLDPLGLYSDDEIWEALEKCQLKATISSLPNLLDSYVSDEGENWS 1349

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
             GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR+EF   TVITVAHRVPT+
Sbjct: 1350 AGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFSNCTVITVAHRVPTL 1409

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQ 466
             DSDM MVLSYG+LVEYD PS LMETNS+FSKLVAEY SS  RNS Q
Sbjct: 1410 IDSDMVMVLSYGKLVEYDEPSNLMETNSSFSKLVAEYWSSCWRNSSQ 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515285|ref|XP_003627931.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|355521953|gb|AET02407.1| Multidrug resistance protein ABC transporter family [Medicago truncatula]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/466 (71%), Positives = 407/466 (87%), Gaps = 1/466 (0%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + SSD+S +DFD+P +I+  A+   ++ +II +M SVTW VLIVA+P ++ + YIQ Y
Sbjct: 808  LTRASSDLSILDFDIPFSITFVASVVIEILVIICIMVSVTWQVLIVAVPAMVASIYIQQY 867

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            Y +S+REL+R+NGTTKAP++NFAAETS GVV++RAF M+D FF+NYLKLVDTDA LFFHS
Sbjct: 868  YQASSRELIRINGTTKAPVMNFAAETSLGVVTVRAFGMVDRFFKNYLKLVDTDASLFFHS 927

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHL-PGFVGLSLSYALTLSSIQVIMTRWY 179
            N A EW+V+R+EALQNL ++TAALLI+LLP  ++ PG VGLSLSYA TL+  Q+  TRW+
Sbjct: 928  NVAMEWVVVRVEALQNLTVITAALLIILLPRGYVSPGLVGLSLSYAFTLTGAQIFWTRWF 987

Query: 180  CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
             NLSN+I+SVERI+QF+++P EPPA+++  +PP+SWPS G+I+L+ L++RYRPN PLVLK
Sbjct: 988  SNLSNHIISVERIKQFINIPAEPPAVVDHNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLK 1047

Query: 240  GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
            GITCTFK G+RVGVVGRTGSGK+TLISALFRLVEP +G ILIDG++ICSMGLKDLR +LS
Sbjct: 1048 GITCTFKGGSRVGVVGRTGSGKSTLISALFRLVEPSSGDILIDGINICSMGLKDLRMRLS 1107

Query: 300  IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            IIPQEPTLF+GS+RTNLDPLG+YSD+EIW A+EKCQLK TI +LP LLDSSVSDEG NWS
Sbjct: 1108 IIPQEPTLFKGSIRTNLDPLGLYSDDEIWNAVEKCQLKETICKLPSLLDSSVSDEGGNWS 1167

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
            +GQRQLFCLGRVLLKRN+ILVLDEATASIDSATDAILQRIIR+EF   TVITVAHRVPT+
Sbjct: 1168 LGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAILQRIIRQEFEECTVITVAHRVPTV 1227

Query: 420  TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSM 465
             DSDM MVLSYG+LVEYD PSKLM+TNS+FSKLVAEY SS +++S 
Sbjct: 1228 IDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKSSF 1273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	467
TAIR|locus:2077750	1453	ABCC10 "ATP-binding cassette C	0.980	0.315	0.502	1.3e-118
TAIR|locus:2090049	1493	ABCC7 "ATP-binding cassette C7	0.993	0.310	0.459	7.6e-112
TAIR|locus:2081755	1539	ABCC14 "ATP-binding cassette C	0.972	0.294	0.470	9.3e-110
TAIR|locus:2090029	1514	ABCC3 "ATP-binding cassette C3	0.980	0.302	0.465	3e-109
TAIR|locus:2090039	1466	ABCC6 "ATP-binding cassette C6	0.989	0.315	0.454	9e-109
TAIR|locus:2043268	1516	ABCC4 "ATP-binding cassette C4	0.972	0.299	0.461	2.7e-108
TAIR|locus:2020235	1514	ABCC5 "ATP-binding cassette C5	0.970	0.299	0.451	3e-102
DICTYBASE|DDB_G0284867	1593	abcC8 "ABC transporter C famil	0.982	0.288	0.406	3.9e-84
MGI|MGI:1352447	1543	Abcc2 "ATP-binding cassette, s	0.957	0.289	0.392	1.7e-81
RGD|2366	1541	Abcc2 "ATP-binding cassette, s	0.959	0.290	0.392	1.6e-80

TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 231/460 (50%), Positives = 308/460 (66%)

Query:     3 QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
             +VSSD+S +D D+P  +    A++ +    + V+A VTW VL V++P V +A  +Q YY 
Sbjct:   988 RVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYF 1047

Query:    63 SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
              +A+ELMR+NGTT++ + N  AE+  G ++IRAF   + FF+  L L+DT+A  FFHS A
Sbjct:  1048 QTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFA 1107

Query:   123 ATEWLVLRIEXXXXXXXXXXXXXXXXXP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
             A EWL+ R+E                 P G    GF+G++LSY L+L+   V   +  C 
Sbjct:  1108 ANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCY 1167

Query:   182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
             L+N I+SVER+ Q+ HL PE P +IEET+PP +WP  GR+E+ DL++RYR  +PLVLKGI
Sbjct:  1168 LANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGI 1227

Query:   242 TCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
             +CTF+                 LISALFRLVEP  G+I++DG+DI  +G+ DLR++  II
Sbjct:  1228 SCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGII 1287

Query:   302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
             PQ+PTLF G+VR NLDPL  +SD EIWE + KCQLK  +      LDS V ++G NWS+G
Sbjct:  1288 PQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMG 1347

Query:   362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
             QRQLFCLGR +L+R+R+LVLDEATASID+ATD ILQ+ IR EF   TVITVAHR+PT+ D
Sbjct:  1348 QRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVMD 1407

Query:   422 SDMFMVLSYGELVEYDLPSKLM-ETNSAFSKLVAEYRSSY 460
               M + +S G +VEYD P KLM + NS F KLV EY S Y
Sbjct:  1408 CTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYWSHY 1447

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 216/470 (45%), Positives = 313/470 (66%)

Query:     3 QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
             + S+D S +D  LPS  S  A A  ++  II VM  V W VLIV IP +    + + YY+
Sbjct:  1022 RASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYI 1081

Query:    63 SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
             S+AREL R++G +++P+V   +ET  G+ +IR+F     F  + ++L D  +RL FH+ +
Sbjct:  1082 SAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAIS 1141

Query:   123 ATEWLVLRIEXXXXXXXXXXXXXXXXXP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
             A EWL  R++                 P G   P F GL+++YAL L+S+Q  +    C+
Sbjct:  1142 AMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCD 1201

Query:   182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
             L N ++SVER+ Q++ +P EP  +IE T+P  SWP  G I + +L+VRY P+ P+VL+G+
Sbjct:  1202 LENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGL 1261

Query:   242 TCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
             TCTF+                 LI  LFR+VEP  G I IDG++I ++GL DLR++LSII
Sbjct:  1262 TCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSII 1321

Query:   302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
             PQEPT+F G+VR+NLDPL  Y+D++IWEA++KCQL   I +  + LDS VS+ G+NWSVG
Sbjct:  1322 PQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVG 1381

Query:   362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
             QRQL CLGRVLLKR+++L+LDEATAS+D+ATD ++Q  +R+ F G TVIT+AHR+ ++ D
Sbjct:  1382 QRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVID 1441

Query:   422 SDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAEYRSS----YKRNSMQ 466
             SDM ++L  G + E+D P++L+E  +S+FSKLVAEY +S    +KR+SM+
Sbjct:  1442 SDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSDSRFKRSSMK 1491

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0051707 "response to other organism" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1087 (387.7 bits), Expect = 9.3e-110, P = 9.3e-110
 Identities = 214/455 (47%), Positives = 292/455 (64%)

Query:     3 QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
             + S+D + +D  +P  I L A   T +  I  V     WP +   IP   +  + +GYYL
Sbjct:  1078 RASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYL 1137

Query:    63 SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
             +S+REL R++  TKAP+++  +E+  GV++IRAFK   MF +  +K V+ + R+ FH+N 
Sbjct:  1138 ASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNG 1197

Query:   123 ATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHL-PGFVGLSLSYALTLSSIQVIMTRWYCN 181
             + EWL  R+E                 P   + P  VGLSLSY L+L+ +        C 
Sbjct:  1198 SNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCF 1257

Query:   182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
             + N +VSVERI+QF  +P E    I+E++PP +WP  G I LED+KVRYRPNTPLVLKG+
Sbjct:  1258 IENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGL 1317

Query:   242 TCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
             T   K                 LI  LFRLVEP  G+I+IDG+DIC++GL DLR++  II
Sbjct:  1318 TIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGII 1377

Query:   302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
             PQEP LF G+VR+N+DP   YSD EIW+++E+CQLK  ++  P  LDS V+D GENWSVG
Sbjct:  1378 PQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVG 1437

Query:   362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
             QRQL CLGRV+LKR+RIL LDEATAS+DS TDA++Q+IIRE+F   T+I++AHR+PT+ D
Sbjct:  1438 QRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMD 1497

Query:   422 SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
              D  +V+  G+  EYD P +L+E  S F+ LV EY
Sbjct:  1498 CDRVLVIDAGKAKEYDSPVRLLERQSLFAALVQEY 1532

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1081 (385.6 bits), Expect = 3.0e-109, P = 3.0e-109
 Identities = 214/460 (46%), Positives = 299/460 (65%)

Query:     1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
             M + S+D S +D +LP      A     +  II VM+ V+W V +V IP V  + + Q Y
Sbjct:  1048 MSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQRY 1107

Query:    61 YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
             Y+++AREL R+ G  KAP++   +ET  G  +IR+F     F  + ++L D  +R  F++
Sbjct:  1108 YIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKFYT 1167

Query:   121 NAATEWLVLRIEXXXXXXXXXXXXXXXXXP-GKHLPGFVGLSLSYALTLSSIQVIMTRWY 179
               A EWL  R++                 P G   P   GL+++Y L+L+++Q  +    
Sbjct:  1168 AGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTL 1227

Query:   180 CNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
             CNL N I+SVERI Q+  +P EPP +IE  +P  SWPS G +E+ DL+VRY P+ PLVL+
Sbjct:  1228 CNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLR 1287

Query:   240 GITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
             GITCTFK                 LI  LFR+VEP  G I IDG++I ++GL DLR +LS
Sbjct:  1288 GITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLHDLRLRLS 1347

Query:   300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
             IIPQ+PT+F G++R+NLDPL  Y+D++IWEA++KCQL   + +    LDSSVS+ G+NWS
Sbjct:  1348 IIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWS 1407

Query:   360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
             +GQRQL CLGRVLLKR++ILVLDEATAS+D+ATD ++Q+ +RE F   TVIT+AHR+ ++
Sbjct:  1408 MGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHRISSV 1467

Query:   420 TDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAEYRS 458
              DSDM ++LS G + EYD P +L+E  +S+FSKLVAEY S
Sbjct:  1468 IDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTS 1507

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0010290 "chlorophyll catabolite transmembrane transporter activity" evidence=IDA

GO:0015431 "glutathione S-conjugate-exporting ATPase activity" evidence=IDA

TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 211/464 (45%), Positives = 300/464 (64%)

Query:     3 QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
             + S+D S  D  LP   +  A A  ++  II V+  V W VLIV IP V    + + YY+
Sbjct:  1000 RASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYI 1059

Query:    63 SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
             S+AREL R+ G +++P+V+  +ET  G+ +IR+F     F  + ++L D  +RL FHS  
Sbjct:  1060 SAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTG 1119

Query:   123 ATEWLVLRIEXXXXXXXXXXXXXXXXXP-GKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
             A EWL  R+E                 P G   P   GL+++YAL L+++Q  +    C+
Sbjct:  1120 AMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCD 1179

Query:   182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
             L N ++SVER+ Q+ ++P EPP +IE T+P  SWPS G I + +L+VRY P+ P+VL G+
Sbjct:  1180 LENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGL 1239

Query:   242 TCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
             TCTF                  LI  LFR+VEP  G I IDG++I S+GL DLR++LSII
Sbjct:  1240 TCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSII 1299

Query:   302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
             PQ+PT+F G++R+NLDPL  Y+D++IWEA++ CQL   + +  + LDS VS+ G+NWSVG
Sbjct:  1300 PQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVG 1359

Query:   362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
             QRQL CLGRVLLKR+++LVLDEATASID+ATD ++Q  +R  F   TVIT+AHR+ ++ D
Sbjct:  1360 QRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVID 1419

Query:   422 SDMFMVLSYGELVEYDLPSKLMETNSA-FSKLVAEYRSSYKRNS 464
             SDM ++L  G + E+D P++L+E  S+ FSKLVAEY +S +  S
Sbjct:  1420 SDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSSESKS 1463

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 2.7e-108, P = 2.7e-108
 Identities = 210/455 (46%), Positives = 291/455 (63%)

Query:     3 QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
             + S+D + +D  +P  + L  +  T +  I  V     WP     IP   +  + + YYL
Sbjct:  1055 RASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYL 1114

Query:    63 SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
             +S+REL RM+  TKAPI++  +E+  GV++IR+F+  ++F +  +K V+ + R+ FH+N 
Sbjct:  1115 ASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNG 1174

Query:   123 ATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHL-PGFVGLSLSYALTLSSIQVIMTRWYCN 181
             + EWL  R+E                 P   + P  VGLSLSY L+L+S+        C 
Sbjct:  1175 SNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCF 1234

Query:   182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
             + N +VSVERI+QF  +P E     +ET PP++WP HG + LEDLKVRYRPNTPLVLKGI
Sbjct:  1235 VENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGI 1294

Query:   242 TCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
             T   K                 LI  LFRLVEP  G+I+IDG+DI ++GL DLR++  II
Sbjct:  1295 TLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGII 1354

Query:   302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
             PQEP LF G+VR+N+DP   YSD EIW+++E+CQLK  ++  P  LDS V D GENWSVG
Sbjct:  1355 PQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVG 1414

Query:   362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
             QRQL CLGRV+LKR+R+L LDEATAS+DS TDA++Q+IIRE+F   T+I++AHR+PT+ D
Sbjct:  1415 QRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMD 1474

Query:   422 SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
              D  +V+  G+  E+D P++L+E  S F+ LV EY
Sbjct:  1475 GDRVLVIDAGKAKEFDSPARLLERPSLFAALVQEY 1509

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0008517 "folic acid transporter activity" evidence=IGI

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1019 (363.8 bits), Expect = 3.0e-102, P = 3.0e-102
 Identities = 208/461 (45%), Positives = 290/461 (62%)

Query:     3 QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYL 62
             +VS D S +D D+P  +   A+ T  +  I++VM +VTW V ++ +P  +   ++Q YY+
Sbjct:  1049 RVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYM 1108

Query:    63 SSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNA 122
             +S+REL+R+    K+PI++   E+  G  +IR F     F +  L L+D   R FF S A
Sbjct:  1109 ASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIA 1168

Query:   123 ATEWLVLRIEXXXXXXXXXXXXXXXXXP-GKHLPGFVGLSLSYALTLSSIQVIMTRW--- 178
             A EWL LR+E                 P G   P   GL+++Y L L+     ++RW   
Sbjct:  1169 AIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGR---LSRWILS 1225

Query:   179 YCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238
             +C L N I+S+ERI Q+  +  E PAIIE+ +PP+SWP+ G IEL D+KVRY  N P VL
Sbjct:  1226 FCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVL 1285

Query:   239 KGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298
              G++C F                  LI ALFRL+EP  G+I ID +DI  +GL DLR++L
Sbjct:  1286 HGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRL 1345

Query:   299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358
              IIPQ+PTLF G++R NLDPL  +SD++IWEA++K QL   +    + LDS V + G+NW
Sbjct:  1346 GIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNW 1405

Query:   359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT 418
             SVGQRQL  LGR LLK+ +ILVLDEATAS+D+ATD ++Q+IIR EF   TV T+AHR+PT
Sbjct:  1406 SVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPT 1465

Query:   419 ITDSDMFMVLSYGELVEYDLPSKLMETNSA-FSKLVAEYRS 458
             + DSD+ +VLS G + E+D P++L+E  S+ F KLV EY S
Sbjct:  1466 VIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSS 1506

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0008281 "sulfonylurea receptor activity" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=IMP

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005773 "vacuole" evidence=IDA

DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 853 (305.3 bits), Expect = 3.9e-84, P = 3.9e-84
 Identities = 189/465 (40%), Positives = 271/465 (58%)

Query:     5 SSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVA-IPTVIVAKYIQGYYLS 63
             S D  T+D  +   + +       V   I V+A V+ P +I+A +P   +  +IQ YYL+
Sbjct:  1129 SKDQLTIDESIARTLGMFLNTFCQVVGSIIVIAWVS-PFIILAMVPVGALFYFIQKYYLN 1187

Query:    64 SARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAA 123
             S+REL R+ G +++PI    +ET  GV +IRAFK +  F     +L+D + + ++ + ++
Sbjct:  1188 SSRELTRLEGVSRSPIYAHFSETLAGVTTIRAFKDVARFVTENERLLDENQKCYYINISS 1247

Query:   124 TEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLS 183
               WL +R+E                   +   G  GL ++YAL ++     M R  C+L 
Sbjct:  1248 NRWLAIRLEFLGACLVSCAVLYTVLARSRIEAGTAGLVITYALAITGNMNWMVRMSCDLE 1307

Query:   184 NNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITC 243
             N++VS+ERI+++  LP E P +  +   P SWPSHG+I  ++L + YR     VL+GI C
Sbjct:  1308 NSVVSIERIQEYCLLPSEAP-LFNDKSVPMSWPSHGKIVFKNLWLTYREGLDPVLRGINC 1366

Query:   244 TFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 303
             T +                 L  ALFRLVEP  G I IDG+DI  +GL  LR++++IIPQ
Sbjct:  1367 TIEPKTKVGIVGRTGAGKSSLTQALFRLVEPLRGTIEIDGIDITELGLNPLRSRMAIIPQ 1426

Query:   304 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363
             +P LF GSVR NLDP   Y D+EIWEA+E   L   I  L   LD+ V D G+N+SVGQR
Sbjct:  1427 DPVLFAGSVRYNLDPFDQYDDHEIWEAIENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQR 1486

Query:   364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSD 423
             QL  +GR LLK+  I+VLDEA++SID A+DA++Q  IR +F   TV+T+AHR+ TI DSD
Sbjct:  1487 QLLVIGRALLKKANIIVLDEASSSIDIASDALIQETIRTKFADCTVLTIAHRLGTIADSD 1546

Query:   424 MFMVLSYGELVEYDLPSKLMET-NSAFSKLVAEYRSSYKRNSMQD 467
               MVL  GEL+EYD PS+L++  +S +  LV    S  K+N   D
Sbjct:  1547 KIMVLDKGELIEYDSPSELLKNQDSIYYSLVKASES--KQNIDND 1589

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)]

 Score = 828 (296.5 bits), Expect = 1.7e-81, P = 1.7e-81
 Identities = 178/454 (39%), Positives = 262/454 (57%)

Query:     5 SSDMSTMDFDLPSAISLSAAATTDVFIIIS--VMASVTWPV-LIVAIPTVIVAKYIQGYY 61
             + D+ST+D  LP  +          F I+S  VM  +  P+ +I+ IP  I+   +Q +Y
Sbjct:  1083 AGDISTVDDTLPQTLRSWLLC---FFGIVSTLVMICMATPIFIIIIIPLSILYVSVQVFY 1139

Query:    62 LSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSN 121
             ++++R+L R++  TK+PI +  +ET  G+  IRAF+    F  N  K +DT+ +  F   
Sbjct:  1140 VATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQIDTNQKCVFSWI 1199

Query:   122 AATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCN 181
              +  WL +R+E                         VG  LS AL ++     + R    
Sbjct:  1200 TSNRWLAIRLELVGNLIVFCSALLLVIYKNSLTGDTVGFVLSNALNITQTLNWLVRMTSE 1259

Query:   182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
             +  NIV+VERI +++++  E P + ++ KPPA WP  G I+  + +VRYRP   LVLKGI
Sbjct:  1260 VETNIVAVERINEYINVDNEAPWVTDK-KPPADWPKKGEIQFNNYQVRYRPELDLVLKGI 1318

Query:   242 TCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
             TC  K                 L + LFR++E   G+I+IDG+DI S+GL DLR +L+II
Sbjct:  1319 TCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDIASIGLHDLRGRLTII 1378

Query:   302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
             PQ+P LF G++R NLDP   YSD EIW A+E   LK+ ++ L + L   V++ G+N S+G
Sbjct:  1379 PQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQLGLLHEVTEGGDNLSIG 1438

Query:   362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD 421
             QRQL CLGR +L++++ILVLDEATA++D  TD+++Q  IR EF   TVIT+AHR+ TI D
Sbjct:  1439 QRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEFSQCTVITIAHRLHTIMD 1498

Query:   422 SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455
             SD  MVL  G++VEY  P +L+     F  +  E
Sbjct:  1499 SDKIMVLDSGKIVEYGSPEELLSNMGPFYLMAKE 1532

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006855 "drug transmembrane transport" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0015732 "prostaglandin transport" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030644 "cellular chloride ion homeostasis" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=ISO

GO:0046581 "intercellular canaliculus" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0070327 "thyroid hormone transport" evidence=ISO

RGD|2366 Abcc2 "ATP-binding cassette, subfamily C (CFTR/MRP), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 819 (293.4 bits), Expect = 1.6e-80, P = 1.6e-80
 Identities = 178/453 (39%), Positives = 263/453 (58%)

Query:     5 SSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVL-IVAIPTVIVAKYIQGYYLS 63
             S D+ST+D  LP  +         +   + VM  +  PV  I+ IP  I+   +Q +Y++
Sbjct:  1081 SGDISTVDDLLPQTLRSWMMCFFGIAGTL-VMICMATPVFAIIIIPLSILYISVQVFYVA 1139

Query:    64 SARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAA 123
             ++R+L R++  TK+PI +  +ET  G+  IRAF+    F     K +D + +  F    +
Sbjct:  1140 TSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDINQKCVFSWITS 1199

Query:   124 TEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPG-FVGLSLSYALTLSSIQVIMTRWYCNL 182
               WL +R+E                   K L G  VG  LS AL ++     + R     
Sbjct:  1200 NRWLAIRLELVGNLVVFCSALLLVIYR-KTLTGDVVGFVLSNALNITQTLNWLVRMTSEA 1258

Query:   183 SNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGIT 242
               NIV+VERI +++++  E P + ++ +PPA WP HG I+  + +VRYRP   LVLKGIT
Sbjct:  1259 ETNIVAVERISEYINVENEAPWVTDK-RPPADWPRHGEIQFNNYQVRYRPELDLVLKGIT 1317

Query:   243 CTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 302
             C  K                 L + LFR++E   G+I+IDG+D+ S+GL DLR +L+IIP
Sbjct:  1318 CNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVASIGLHDLRERLTIIP 1377

Query:   303 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362
             Q+P LF GS+R NLDP   YSD E+W A+E   L++ +S L + L S V++ G+N S+GQ
Sbjct:  1378 QDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNLSIGQ 1437

Query:   363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDS 422
             RQL CLGR +L++++ILVLDEATA++D  TD+++Q  IR+EF   TVIT+AHR+ TI DS
Sbjct:  1438 RQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHTIMDS 1497

Query:   423 DMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455
             D  MVL  G++VEY  P +L+    +F  +  E
Sbjct:  1498 DKIMVLDNGKIVEYGSPEELLSNRGSFYLMAKE 1530

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006855 "drug transmembrane transport" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0008514 "organic anion transmembrane transporter activity" evidence=TAS

GO:0009408 "response to heat" evidence=IEP

GO:0015711 "organic anion transport" evidence=TAS

GO:0015732 "prostaglandin transport" evidence=IMP

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO;IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030644 "cellular chloride ion homeostasis" evidence=IDA

GO:0031427 "response to methotrexate" evidence=IEP

GO:0042493 "response to drug" evidence=IDA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IDA

GO:0046581 "intercellular canaliculus" evidence=ISO

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0048545 "response to steroid hormone stimulus" evidence=IEP

GO:0070327 "thyroid hormone transport" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.3	LOW CONFIDENCE prediction!
3rd Layer	3.6.3.44	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.44.176.1 multidrug resistance protein ABC transporter family (1253 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	467
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	1e-126
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	1e-122
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-115
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-112
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	2e-96
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	3e-80
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-79
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	4e-78
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	5e-67
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-63
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	3e-63
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-56
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	7e-54
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	6e-53
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	9e-53
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-52
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-51
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	1e-48
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-48
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-47
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-46
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	6e-46
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	7e-46
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	5e-45
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	5e-44
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-41
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-40
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-40
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-40
COG5265	497	COG5265, ATM1, ABC-type transport system involved	3e-40
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-39
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	4e-39
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	4e-38
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-34
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	2e-33
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-33
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-33
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	8e-32
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-31
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	4e-30
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	8e-30
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-28
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	8e-28
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-27
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	3e-27
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	4e-27
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	6e-27
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-26
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-25
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-25
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	3e-25
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-24
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-24
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-24
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	7e-24
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-23
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	9e-23
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	1e-22
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	4e-22
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	5e-22
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	8e-22
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	8e-22
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-21
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-21
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	3e-21
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	3e-21
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	4e-21
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	4e-21
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	8e-21
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-20
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	3e-20
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	4e-20
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	7e-20
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	7e-20
pfam00005	119	pfam00005, ABC_tran, ABC transporter	7e-20
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-19
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	4e-19
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	5e-19
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	5e-19
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	9e-19
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-18
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-18
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-18
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-18
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-18
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	4e-18
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	6e-18
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	8e-18
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	9e-18
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-17
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-17
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	7e-17
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	7e-17
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	7e-17
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	9e-17
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	1e-16
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-16
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	3e-16
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	6e-16
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	6e-16
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	6e-16
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	3e-15
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	3e-15
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	4e-15
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	5e-15
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	5e-15
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	8e-15
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	8e-15
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	8e-15
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-14
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	1e-14
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-14
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	1e-14
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-14
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	2e-14
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	2e-14
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-14
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-14
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-14
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	2e-14
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-14
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	3e-14
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	4e-14
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	9e-14
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-13
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-13
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-13
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-13
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-13
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-13
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	2e-13
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-13
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-13
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	3e-13
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	3e-13
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	3e-13
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	3e-13
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	4e-13
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	4e-13
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	5e-13
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	6e-13
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	6e-13
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	7e-13
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	7e-13
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	7e-13
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	7e-13
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	7e-13
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	9e-13
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	9e-13
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	9e-13
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	1e-12
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-12
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-12
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-12
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-12
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-12
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	3e-12
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	3e-12
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-12
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	3e-12
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	4e-12
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	5e-12
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	6e-12
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	6e-12
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	6e-12
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	6e-12
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	6e-12
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	8e-12
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	9e-12
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	9e-12
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	9e-12
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-11
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	2e-11
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-11
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-11
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-11
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-11
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	2e-11
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	2e-11
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	3e-11
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	3e-11
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	7e-11
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-10
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-10
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	1e-10
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-10
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	1e-10
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-10
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-10
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-10
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	2e-10
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	2e-10
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	2e-10
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-10
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-10
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	2e-10
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	3e-10
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-10
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	3e-10
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	3e-10
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	4e-10
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	5e-10
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	6e-10
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	6e-10
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	7e-10
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	8e-10
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	8e-10
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	9e-10
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	1e-09
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	1e-09
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	1e-09
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-09
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-09
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-09
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-09
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-09
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-09
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-09
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-09
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	2e-09
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-09
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-09
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	3e-09
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	4e-09
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	4e-09
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	4e-09
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	5e-09
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	5e-09
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	6e-09
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	7e-09
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	8e-09
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	1e-08
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	1e-08
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	1e-08
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	1e-08
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-08
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-08
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	2e-08
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	2e-08
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	2e-08
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-08
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	3e-08
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	4e-08
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	4e-08
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	4e-08
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	4e-08
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	4e-08
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	5e-08
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	6e-08
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	7e-08
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	8e-08
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	1e-07
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	1e-07
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	1e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	2e-07
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-07
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-07
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-07
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	2e-07
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	3e-07
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	4e-07
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	4e-07
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	4e-07
COG4598	256	COG4598, HisP, ABC-type histidine transport system	4e-07
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	6e-07
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	8e-07
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-06
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-06
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	2e-06
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	2e-06
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-06
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	3e-06
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	4e-06
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	4e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	5e-06
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	5e-06
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	5e-06
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	5e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	5e-06
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	5e-06
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	6e-06
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	6e-06
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	6e-06
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	6e-06
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	7e-06
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	8e-06
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	9e-06
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	9e-06
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	9e-06
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	1e-05
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	1e-05
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	1e-05
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	1e-05
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	1e-05
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	1e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-05
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-05
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-05
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-05
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	3e-05
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	4e-05
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	5e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	6e-05
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	7e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	8e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-04
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	2e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	3e-04
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	5e-04
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	5e-04
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	6e-04
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	8e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	0.001
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	0.001
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	0.001
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	0.001
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	0.001
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.002
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.002
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	0.002
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	0.002
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	0.002
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.003
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	0.003
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.004
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.004

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  366 bits (941), Expect = e-126
 Identities = 127/221 (57%), Positives = 169/221 (76%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           G IE +++ +RYRPN P VLK I+ + K G +VG+VGRTGSGK++L+ ALFRLVE  +G 
Sbjct: 1   GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
           ILIDG+DI  +GL DLR+++SIIPQ+P LF G++R+NLDP G YSD E+W+A+E+  LK 
Sbjct: 61  ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
            +  LP  LD+ V + GEN SVGQRQL CL R LL++++ILVLDEATAS+D  TDA++Q+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180

Query: 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP 439
            IRE F   TV+T+AHR+ TI DSD  +VL  G +VE+D P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  389 bits (1001), Expect = e-122
 Identities = 183/433 (42%), Positives = 273/433 (63%), Gaps = 15/433 (3%)

Query: 30   FIIISVMASVT-WPVLIVAIPTVIV--AKYIQGYYLSSARELMRMNGTTKAPIVNFAAET 86
            F++I ++++++ W ++    P +++    Y+  YY S+ARE+ R++  T++P+     E 
Sbjct: 1045 FVLIGIVSTISLWAIM----PLLVLFYGAYL--YYQSTAREVKRLDSITRSPVYAQFGEA 1098

Query: 87   SQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI 146
              G+ +IRA+K  D   E   + +D + R    + ++  WL +R+E L  L+I   A   
Sbjct: 1099 LNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFA 1158

Query: 147  VLLPGK-----HLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPE 201
            V+  G+          +GL LSYAL ++S+   + R      N++ +VER+  ++ LP E
Sbjct: 1159 VMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSE 1218

Query: 202  PPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGK 261
             P +IE  +PP  WPS G I+ ED+ +RYRP  P VL G++       +VG+VGRTG+GK
Sbjct: 1219 APLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGK 1278

Query: 262  TTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 321
            +++++ALFR+VE E GRILIDG DI   GL DLR  L IIPQ P LF G+VR NLDP   
Sbjct: 1279 SSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE 1338

Query: 322  YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381
            ++D ++WE++E+  LK  I R  + LD+ VS+ GEN+SVGQRQL  L R LL+R++ILVL
Sbjct: 1339 HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVL 1398

Query: 382  DEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSK 441
            DEATA++D  TDA++Q+ IREEF   T++ +AHR+ TI D D  +VL  G +VE+D P  
Sbjct: 1399 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPEN 1458

Query: 442  L-METNSAFSKLV 453
            L     SAFSK+V
Sbjct: 1459 LLSNEGSAFSKMV 1471

Length = 1622

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  369 bits (949), Expect = e-115
 Identities = 180/445 (40%), Positives = 269/445 (60%)

Query: 5    SSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSS 64
            S ++ T+D  +P  I +   +  +V   + V+   T    ++  P  ++  ++Q +Y++S
Sbjct: 1069 SKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVAS 1128

Query: 65   ARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAAT 124
            +R+L R+   +++P+ +   ET  GV  IRAF+  + F       VD + + ++ S  A 
Sbjct: 1129 SRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188

Query: 125  EWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSN 184
             WL +R+E + N I+L AAL  V+       G VGLS+SY+L ++     + R    +  
Sbjct: 1189 RWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMET 1248

Query: 185  NIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCT 244
            NIV+VER++++     E P  I+ET PP+ WP  GR+E  +  +RYR +  LVL+ I  T
Sbjct: 1249 NIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVT 1308

Query: 245  FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 304
               G +VG+VGRTG+GK++L   LFR+ E   G I+IDGL+I  +GL DLR K++IIPQ+
Sbjct: 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368

Query: 305  PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364
            P LF GS+R NLDP   YSD E+W A+E   LK  +S LP  LD   ++ GEN SVGQRQ
Sbjct: 1369 PVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428

Query: 365  LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDM 424
            L CL R LL++ +ILVLDEATA++D  TD ++Q  IR +F   TV+T+AHR+ TI D   
Sbjct: 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1488

Query: 425  FMVLSYGELVEYDLPSKLMETNSAF 449
             +VL  GE+ E+  PS L++    F
Sbjct: 1489 VIVLDKGEVAEFGAPSNLLQQRGIF 1513

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  360 bits (925), Expect = e-112
 Identities = 185/431 (42%), Positives = 276/431 (64%), Gaps = 11/431 (2%)

Query: 30   FIIISVMASVT-WPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQ 88
            F +I  +++++ W ++ + I  +  A Y+  YY S++RE+ R++  T++PI     E   
Sbjct: 1042 FALIGTVSTISLWAIMPLLI--LFYAAYL--YYQSTSREVRRLDSVTRSPIYAQFGEALN 1097

Query: 89   GVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL 148
            G+ SIRA+K  D   +   K +D + R    + ++  WL +R+E L  ++I   A   VL
Sbjct: 1098 GLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL 1157

Query: 149  LPGK--HLPGF---VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP 203
              G   +  GF   +GL LSY L ++++   + R      N++ SVER+  ++ LP E  
Sbjct: 1158 RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEAT 1217

Query: 204  AIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTT 263
            AIIE  +P + WPS G I+ ED+ +RYRP  P VL G++       +VGVVGRTG+GK++
Sbjct: 1218 AIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSS 1277

Query: 264  LISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS 323
            +++ALFR+VE E GRI+ID  D+   GL DLR  LSIIPQ P LF G+VR N+DP   ++
Sbjct: 1278 MLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHN 1337

Query: 324  DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
            D ++WEA+E+  +K  I R P  LD+ VS+ GEN+SVGQRQL  L R LL+R++ILVLDE
Sbjct: 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE 1397

Query: 384  ATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443
            ATAS+D  TD+++QR IREEF   T++ +AHR+ TI D D  +VLS G+++EYD P +L+
Sbjct: 1398 ATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELL 1457

Query: 444  ETN-SAFSKLV 453
              + SAF ++V
Sbjct: 1458 SRDTSAFFRMV 1468

Length = 1495

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score =  288 bits (740), Expect = 2e-96
 Identities = 123/225 (54%), Positives = 159/225 (70%), Gaps = 18/225 (8%)

Query: 215 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP 274
           WP HG IE+E+L VRY P+ P VLK ++   K G ++G+VGRTG+GK+TLI ALFR +E 
Sbjct: 1   WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60

Query: 275 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKC 334
           E G+I IDG+DI ++ L+DLR+ L+IIPQ+PTLF G++R+NLDP   YSD EI+ A+   
Sbjct: 61  EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL--- 117

Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
                           VS+ G N S GQRQL CL R LLKR R+LVLDEATASID ATDA
Sbjct: 118 ---------------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162

Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP 439
           ++Q+ IREEF  ST++T+AHR+ TI D D  +V+  GE+ EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score =  249 bits (636), Expect = 3e-80
 Identities = 119/236 (50%), Positives = 165/236 (69%), Gaps = 1/236 (0%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           G I++ DL VRY  N   VLK +    K G +VG+ GRTGSGK++L  A FR+V+  +G+
Sbjct: 18  GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
           I+IDG+DI  + L  LR++LSII Q+P LF GS+R NLDP    +D+ +WEA+E  QLK 
Sbjct: 78  IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
            +  LP  LD+ V++ GEN+SVGQRQLFCL R  ++++ IL++DEATASID AT+ ILQ+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197

Query: 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKLV 453
           ++   F   TV+T+AHRV TI D+D+ +VLS G LVE D P  L+ + +  F+ LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  257 bits (658), Expect = 1e-79
 Identities = 120/455 (26%), Positives = 218/455 (47%), Gaps = 9/455 (1%)

Query: 4   VSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLS 63
           +++D+  +   + + + L   +   +   + ++ S++W + ++ +  + +   +      
Sbjct: 115 LTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLAR 174

Query: 64  SARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAA 123
            +R+L R        +     E+  G+  I+AF   D   + + +  +   R    ++  
Sbjct: 175 KSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRL 234

Query: 124 TEWLVLRIEALQNLIILTAALLIVLLPGKHL--PGFVGLSLSYALTLSSIQVIMTRWYCN 181
              L   +  L +L  +    L   L        G +   + Y L L +  + +      
Sbjct: 235 EALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSL 294

Query: 182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
           L     + ER+ + +   PE      E  P     + G IE E++   Y    P VLK I
Sbjct: 295 LQRASAAAERLFELLDEEPEV-----EDPPDPLKDTIGSIEFENVSFSYPGKKP-VLKDI 348

Query: 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
           + + + G +V +VG +GSGK+TLI  L RL +P +G ILIDG+DI  + L  LR ++ I+
Sbjct: 349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408

Query: 302 PQEPTLFRGSVRTNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 360
            Q+P LF G++R N+       +D EI EA++       I+ LP   D+ V + G N S 
Sbjct: 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468

Query: 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT 420
           GQRQ   + R LL+   IL+LDEAT+++D+ T+A++Q  +++   G T + +AHR+ TI 
Sbjct: 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIK 528

Query: 421 DSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455
           ++D  +VL  G +VE     +L+     +++L   
Sbjct: 529 NADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA 563

Length = 567

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  265 bits (678), Expect = 4e-78
 Identities = 157/486 (32%), Positives = 246/486 (50%), Gaps = 41/486 (8%)

Query: 5    SSDMSTMDFDLP-SAISLSAAATTDVFIIISVMA--SVTWP-VLIVAIPTVIVAKYIQGY 60
            S D+  +D  LP S + L       +F I S +   S + P VL+  +P   +   +  +
Sbjct: 1062 SRDIDILDNTLPMSYLYLLQC----LFSICSSILVTSASQPFVLVALVPCGYLYYRLMQF 1117

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            Y S+ RE+ R+    K+P+     E  QG  +I A+    +  +  L+ +D      +  
Sbjct: 1118 YNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLE 1177

Query: 121  NAATEWLVLRIEALQNLIILTAALLIV----LLPGKHLPGFVGLSLSYALTLSSIQVIMT 176
            N A  WL +R+E L N+++   AL+ V    L       G V LSL+ A+  ++    + 
Sbjct: 1178 NVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLV 1237

Query: 177  RWYCNLSNNIVSVERIRQFMH-LPPEP-----------------------PAIIEETKPP 212
            R    +  ++ SVER+  +   +P E                          +IE   P 
Sbjct: 1238 RQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPT 1297

Query: 213  ASWP---SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 269
            ++ P     G +  E +++RYR   PLVL+G++       +VG+VGRTGSGK+TL+    
Sbjct: 1298 SAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFM 1357

Query: 270  RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 329
            R+VE   G I ++G +I + GL++LR + S+IPQ+P LF G+VR N+DP    S  E+W 
Sbjct: 1358 RMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWA 1417

Query: 330  AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL-DEATASI 388
            A+E   L+  ++     +DS V + G N+SVGQRQL C+ R LLK+    +L DEATA+I
Sbjct: 1418 ALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI 1477

Query: 389  DSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL-METNS 447
            D A D  +Q  +   F   TVIT+AHR+ T+   D  +V+ +G + E   P +L M   S
Sbjct: 1478 DPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQS 1537

Query: 448  AFSKLV 453
             F  +V
Sbjct: 1538 IFHSMV 1543

Length = 1560

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score =  232 bits (594), Expect = 5e-67
 Identities = 145/492 (29%), Positives = 247/492 (50%), Gaps = 34/492 (6%)

Query: 1    MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGY 60
            + + + DM+ +D  LP  +      T  V   I V++ +   + I AIP  ++   ++ Y
Sbjct: 985  LNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAY 1044

Query: 61   YLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
            +L ++++L ++    ++PI +    + +G+ +IRAF     F   + K ++     +F  
Sbjct: 1045 FLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104

Query: 121  NAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYC 180
             +   W  +RI+ +  +    A   I +   +   G VG+ L+ A+ + S      +W  
Sbjct: 1105 LSTLRWFQMRIDII-FVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILS----TLQWAV 1159

Query: 181  NLSNNI----VSVERIRQFMHLPPEPPA--------------IIEETKPPASWPSHGRIE 222
            N S ++     SV R+ +F+ LP E P               +IE       WPS G+++
Sbjct: 1160 NSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMD 1219

Query: 223  LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 282
            ++ L  +Y      VL+ ++ + + G RVG++GRTGSGK+TL+SAL RL+  E G I ID
Sbjct: 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQID 1278

Query: 283  GLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISR 342
            G+   S+ L+  R    +IPQ+  +F G+ R NLDP   +SD EIW+  E+  LK+ I +
Sbjct: 1279 GVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQ 1338

Query: 343  LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE 402
             P  LD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  I+++ +++
Sbjct: 1339 FPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398

Query: 403  EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV--------- 453
             F   TVI   HRV  + +   F+V+    + +YD   KL+   S F + +         
Sbjct: 1399 SFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLF 1458

Query: 454  -AEYRSSYKRNS 464
                R+S KR  
Sbjct: 1459 PLHRRNSSKRKP 1470

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  204 bits (522), Expect = 2e-63
 Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 4/230 (1%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           G IE E++   Y    P VLK I  + K G  V +VG TG+GKTTLI+ L R  +P+ G+
Sbjct: 1   GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
           ILIDG+DI  +  K LR+ + ++ Q+  LF G++  N+      + +E      K +  A
Sbjct: 60  ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAK-EAGA 118

Query: 339 T--ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
              I +LP   D+ + + G N S G+RQL  + R +L+  +IL+LDEAT++ID+ T+ ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178

Query: 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN 446
           Q  + +   G T I +AHR+ TI ++D  +VL  G+++E     +L+   
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  217 bits (554), Expect = 3e-63
 Identities = 131/448 (29%), Positives = 219/448 (48%), Gaps = 38/448 (8%)

Query: 29  VFIIISVMA----SVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAA 84
             I ++VM      +T  VL      V++    Q       R+L+  +   ++ +V    
Sbjct: 281 ALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLV---- 336

Query: 85  ETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLI--ILTA 142
           ET +G+ +++A      F   +   +     + F     TE L L +  +++L+  + + 
Sbjct: 337 ETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF----KTEKLALILNTIKSLLQQLSSV 392

Query: 143 ALLIV----LLPGKHLPG----FVGLS---LSYALTLSSIQVIMTRWYCNLSNNIVSVER 191
            +L      +L G+   G    F  L+   +S    LS +         +     V++ER
Sbjct: 393 LILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWT-------DFQQAKVALER 445

Query: 192 IRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRV 251
           +   +  PPE      +          G IE E++  RY P+ P VL+ ++     G +V
Sbjct: 446 LGDILDTPPEQ---EGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKV 502

Query: 252 GVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGS 311
            +VGR+GSGK+TL+  L  L +P+ GRIL+DG+D+  + L  LR ++  + Q+P LF GS
Sbjct: 503 AIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGS 562

Query: 312 VRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369
           +R N+  LG    +D EI EA +       I  LPM  D+ V + G N S GQRQ   L 
Sbjct: 563 IRENIA-LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621

Query: 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS 429
           R LL + +IL+LDEAT+++D  T+AI+ + + +   G TVI +AHR+ TI  +D  +VL 
Sbjct: 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLD 681

Query: 430 YGELVEYDLPSKLMETNSAFSKLVAEYR 457
            G++VE     +L+     +++L  +  
Sbjct: 682 QGKIVEQGSHEELLAQGGLYARLYQQQE 709

Length = 709

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  184 bits (470), Expect = 2e-56
 Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 41/208 (19%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE +++   Y      VLK ++ T K G +V +VG +GSGK+TL+  L RL +P +G IL
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
           IDG+D+  + L+ LR  ++ +PQ+P LF G++R N+                        
Sbjct: 61  IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96

Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400
                             S GQRQ   + R LL+   IL+LDEAT+++D  T+A++   +
Sbjct: 97  -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139

Query: 401 REEFPGSTVITVAHRVPTITDSDMFMVL 428
           R    G TVI +AHR+ TI D+D  +VL
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVL 167

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  180 bits (458), Expect = 7e-54
 Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 9/237 (3%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E +++  RY  + P VL+ I+     G  V +VG +GSGK+TL++ + R  + ++GRIL
Sbjct: 1   VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY-----SDNEIWEAMEKCQ 335
           IDG D+    L  LR ++ ++ Q+  LF  +V  N+     Y     +  E+ EA     
Sbjct: 61  IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI----AYGRPGATREEVEEAARAAN 116

Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
               I  LP   D+ + + G   S GQRQ   + R LLK   IL+LDEAT+++D+ ++ +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176

Query: 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           +Q  +       T   +AHR+ TI ++D  +VL  G++VE     +L+     ++KL
Sbjct: 177 VQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  177 bits (452), Expect = 6e-53
 Identities = 86/240 (35%), Positives = 141/240 (58%), Gaps = 12/240 (5%)

Query: 221 IELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           IE +++  RY  RP+ P +LKG++ T   G  V +VG +G GK+T++S L R  +P +G 
Sbjct: 1   IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN-----EIWEAMEK 333
           IL+DG+DI  + L+ LR+++ ++ QEP LF G++  N+     Y        E+ EA +K
Sbjct: 60  ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI----RYGKPDATDEEVEEAAKK 115

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393
             +   I  LP   D+ V + G   S GQ+Q   + R LL+  +IL+LDEAT+++D+ ++
Sbjct: 116 ANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175

Query: 394 AILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453
            ++Q  +     G T I +AHR+ TI ++D+  VL  G++VE     +LM     ++KLV
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score =  178 bits (453), Expect = 9e-53
 Identities = 88/236 (37%), Positives = 140/236 (59%), Gaps = 1/236 (0%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           G++ ++DL  +Y      VL+ I+ +   G RVG++GRTGSGK+TL+SA  RL+  E G 
Sbjct: 1   GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
           I IDG+   S+ L+  R    +IPQ+  +F G+ R NLDP G +SD EIW+  E+  LK+
Sbjct: 60  IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
            I + P  LD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  ++++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179

Query: 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454
            +++ F   TVI   HR+  + +   F+V+   ++ +YD   KL+   S F + ++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  176 bits (449), Expect = 2e-52
 Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 10/237 (4%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE E++   Y P  P VLK ++ T   G +V +VG +GSGK+T++  LFR  +  +G IL
Sbjct: 1   IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY-----SDNEIWEAMEKCQ 335
           IDG DI  + L  LR  + ++PQ+  LF  ++  N+     Y     +D E+ EA +  Q
Sbjct: 60  IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQ 115

Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
           +   I R P   D+ V + G   S G++Q   + R +LK   IL+LDEAT+++D+ T+  
Sbjct: 116 IHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175

Query: 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           +Q  +R+   G T I +AHR+ TI ++D  +VL  G +VE     +L+     ++++
Sbjct: 176 IQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  182 bits (464), Expect = 2e-51
 Identities = 108/446 (24%), Positives = 200/446 (44%), Gaps = 40/446 (8%)

Query: 30  FIIISVMASVTWP---VLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAET 86
            +I+  +    W    +L++  P + +   + G    +A++      +  A +     + 
Sbjct: 129 LLILIAIFFFNWAAALILLITAPLIPLFMILVGL---AAKDASEKQFSALARLSGHFLDR 185

Query: 87  SQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIE-----ALQNLIILT 141
            +G+ ++RAF   +       + +  D+  F  +  +    VLRI       L+    L+
Sbjct: 186 LRGLETLRAFGRTEA----TEERIRKDSEDFRKATMS----VLRIAFLSSAVLEFFAYLS 237

Query: 142 AALLIVLLPGKHLPGFVGLSLSYALT---LSS-----IQVIMTRWYCNLSNNIVSVERIR 193
            AL+ V + G  L G   L+L   L    L+      ++ + + ++        + +++ 
Sbjct: 238 IALVAVYI-GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAA-AGEAAADKLF 295

Query: 194 QFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGV 253
             +  P   P      K   +      I LE+L  RY P+    L  +  T K G    +
Sbjct: 296 TLLESPVATPG--SGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIKAGQLTAL 352

Query: 254 VGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 313
           VG +G+GK+TL++ L   + P  G I ++G+D+  +  +  R ++S + Q P LF G++R
Sbjct: 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412

Query: 314 TNLDPLGMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369
            N+    +     SD EI  A+++  L   +   P  LD+ + + G   S GQ Q   L 
Sbjct: 413 ENI---LLARPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGGQAQRLALA 468

Query: 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS 429
           R LL    +L+LDE TA +D+ T+ I+ + ++E     TV+ + HR+    D+D  +VL 
Sbjct: 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLD 528

Query: 430 YGELVEYDLPSKLMETNSAFSKLVAE 455
            G LVE     +L E    ++ L+ +
Sbjct: 529 NGRLVEQGTHEELSEKQGLYANLLKQ 554

Length = 559

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  176 bits (449), Expect = 1e-48
 Identities = 121/439 (27%), Positives = 205/439 (46%), Gaps = 45/439 (10%)

Query: 20  SLSAAATTD---VFIIISVMASVTWP---VLIVAIPTVIVAK-YIQGYYLSSARELMRMN 72
           S +  A  D     + + V+A +  P   V +VAIP +++    +Q      A E MR +
Sbjct: 261 SATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRES 320

Query: 73  GTTKAPIVNFAAETSQGVVSIRAFKMMDMF---FENYLKLVD-TDARLFFHSNAATEWLV 128
               A +V    E+  G+ +I+A      F   +E  +  +  +  +  F SN AT +  
Sbjct: 321 AQRNAVLV----ESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF-- 374

Query: 129 LRIEALQNLIILTAALLIV----LLPGKHLPGFVGLSLSYALT------LSSIQVIMTRW 178
              + +Q L+  + A+++V    +  G+   G  GL     L+      L  +  ++TR+
Sbjct: 375 --AQFIQQLV--SVAIVVVGVYLISDGELTMG--GLIACVMLSGRALAPLGQLAGLLTRY 428

Query: 179 YCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPS-HGRIELEDLKVRYRPNTPLV 237
                    +++ + + M LP E P    E       P   G IE  ++   Y       
Sbjct: 429 ----QQAKTALQSLDELMQLPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPA 480

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297
           L  ++ T + G +V ++GR GSGK+TL+  L  L +P  G +L+DG+DI  +   DLR  
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540

Query: 298 LSIIPQEPTLFRGSVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEG 355
           +  +PQ+P LF G++R N+  LG     D EI  A E   +   + R P  LD  + + G
Sbjct: 541 IGYVPQDPRLFYGTLRDNIA-LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599

Query: 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR 415
            + S GQRQ   L R LL+   IL+LDE T+++D+ ++   +  ++    G T++ V HR
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659

Query: 416 VPTITDSDMFMVLSYGELV 434
              +   D  +V+  G +V
Sbjct: 660 TSLLDLVDRIIVMDNGRIV 678

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  166 bits (421), Expect = 2e-48
 Identities = 86/237 (36%), Positives = 134/237 (56%), Gaps = 5/237 (2%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I  E ++ RY+P+ P++L  I+   K G  VG+VGR+GSGK+TL   + R   PENGR+L
Sbjct: 1   ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
           +DG D+       LR ++ ++ QE  LF  S+R N+   DP GM S   + EA +     
Sbjct: 61  VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADP-GM-SMERVIEAAKLAGAH 118

Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
             IS LP   D+ V ++G   S GQRQ   + R L+   RIL+ DEAT+++D  ++  + 
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178

Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454
           R + +   G TVI +AHR+ T+ ++D  +V+  G +VE     +L+  N  ++ L  
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  172 bits (438), Expect = 1e-47
 Identities = 113/461 (24%), Positives = 205/461 (44%), Gaps = 50/461 (10%)

Query: 22  SAAATTDVFII-----------ISVMASVTWP---VLIVAIPTV-IVAKYIQGYYLSSAR 66
            A+A TD FI+             V+   +W    +++V +P + I+ + +       ++
Sbjct: 124 VASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISK 183

Query: 67  ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEW 126
           E+    G     +   A ET QG   ++ F         +  + + + RL     +A   
Sbjct: 184 EIQNSMGQ----VTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239

Query: 127 LVLRIEALQNLII---LTAALLIVLLP---GKHLPG-FVGLSLSYAL------TLSSIQV 173
                  +  LI    L   L I L     G    G F     +         +L+++  
Sbjct: 240 S----SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA 295

Query: 174 IMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN 233
            M R        + + E +   +  PPE       T+      + G +E  ++  RY   
Sbjct: 296 PMQR-------GLAAAESLFTLLDSPPEKD---TGTRAIER--ARGDVEFRNVTFRYPGR 343

Query: 234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD 293
               L  I+   + G  V +VGR+GSGK+TL++ + R  EP++G+IL+DG D+    L  
Sbjct: 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403

Query: 294 LRTKLSIIPQEPTLFRGSVRTNL--DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351
           LR +++++ Q+  LF  ++  N+           EI  A+     +  + +LP+ LD+ +
Sbjct: 404 LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463

Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVIT 411
            + G   S GQRQ   + R LLK   IL+LDEAT+++D+ ++ ++Q  +     G T + 
Sbjct: 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523

Query: 412 VAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           +AHR+ TI  +D  +V+  G +VE    ++L+  N  +++L
Sbjct: 524 IAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQL 564

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  170 bits (434), Expect = 2e-46
 Identities = 120/428 (28%), Positives = 194/428 (45%), Gaps = 30/428 (7%)

Query: 36  MASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRA 95
           +A V   + +VAI   +V   +Q       R L+ ++G     I     +   G+  +R 
Sbjct: 277 LALVAVALALVAIAVTLVLGLLQVRKE---RRLLELSGK----ISGLTVQLINGISKLRV 329

Query: 96  FKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLP 155
               +  F  + KL     +L   +      L +    L    +LT+A L        L 
Sbjct: 330 AGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLP---VLTSAALFAAAIS--LL 384

Query: 156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSV-------ERIRQFMHLPPEPPAIIEE 208
           G  GLSL   L  ++     +     LSN ++S+       ER +  +   PE    ++E
Sbjct: 385 GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE----VDE 440

Query: 209 TKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL 268
            K        G IE++ +  RYRP+ PL+L  ++   + G  V +VG +GSGK+TL+  L
Sbjct: 441 AKTDPG-KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL 499

Query: 269 FRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW 328
                PE+G +  DG D+  + ++ +R +L ++ Q   L  GS+  N+      + +E W
Sbjct: 500 LGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAW 559

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           EA     L   I  +PM + + +S+ G   S GQRQ   + R L+++ RIL+ DEAT   
Sbjct: 560 EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT--- 616

Query: 389 DSATDAILQRIIREEFPG--STVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN 446
            SA D   Q I+ E       T I +AHR+ TI ++D   VL  G +V+     +LM   
Sbjct: 617 -SALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675

Query: 447 SAFSKLVA 454
             F++L  
Sbjct: 676 GLFAQLAR 683

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score =  158 bits (402), Expect = 6e-46
 Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 7/220 (3%)

Query: 219 GRIELEDLKVRYRPNTP-LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           GRIE  ++   Y PN     L  ++ T + G +V ++GR GSGK+TL+  L  L +P +G
Sbjct: 1   GRIEFRNVSFSY-PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59

Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKC 334
            +L+DG DI  +   DLR  +  +PQ+ TLF G++R N+    PL    D  I  A E  
Sbjct: 60  SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILRAAELA 117

Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
            +   +++ P  LD  + + G   S GQRQ   L R LL    IL+LDE T+++D  ++ 
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177

Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELV 434
            L+  +R+     T+I + HR   +   D  +V+  G +V
Sbjct: 178 RLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  167 bits (425), Expect = 7e-46
 Identities = 85/272 (31%), Positives = 144/272 (52%), Gaps = 14/272 (5%)

Query: 190 ERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY--RPNTPLVLKGITCTFKE 247
           ER+ + +   P+  A       P   P  G IE E +   Y  RP+ P  L G+  T + 
Sbjct: 309 ERLIELLQAEPDIKAPAHPKTLPV--PLRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRP 365

Query: 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 307
           G  V +VG +G+GK+TL   L R  +P++GRIL+DG+D+  +   +LR +++++PQ+P L
Sbjct: 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL 425

Query: 308 FRGSVRTNL-----DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362
           F  SV  N+     D     +D E+  A         IS LP   D+ + + G   S GQ
Sbjct: 426 FAASVMENIRYGRPDA----TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481

Query: 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDS 422
           RQ   + R +LK   IL+LDEAT+++D+ ++ ++Q+ +     G T + +AHR+ T+  +
Sbjct: 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA 541

Query: 423 DMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454
           D  +V+  G +V     ++L+     +++L  
Sbjct: 542 DRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  166 bits (423), Expect = 5e-45
 Identities = 88/269 (32%), Positives = 147/269 (54%), Gaps = 9/269 (3%)

Query: 187 VSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFK 246
           +++ER+   ++ P EP +      P       G I  E+++ RY P++P VL  +    K
Sbjct: 426 IALERLGDILNSPTEPRSAGLAALPELR----GAITFENIRFRYAPDSPEVLSNLNLDIK 481

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 306
            G  +G+VG +GSGK+TL   L RL  P++G++L+DG+D+       LR ++ ++ QE  
Sbjct: 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541

Query: 307 LFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363
           LF  S+R N+   +P G      +  A +       IS LP   ++ V ++G N S GQR
Sbjct: 542 LFSRSIRDNIALCNP-GA-PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599

Query: 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSD 423
           Q   + R L+   RIL+ DEAT+++D  ++A++ R +RE   G TVI +AHR+ T+   D
Sbjct: 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACD 659

Query: 424 MFMVLSYGELVEYDLPSKLMETNSAFSKL 452
             +VL  G++ E     +L+     +++L
Sbjct: 660 RIIVLEKGQIAESGRHEELLALQGLYARL 688

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  162 bits (412), Expect = 5e-44
 Identities = 121/421 (28%), Positives = 207/421 (49%), Gaps = 47/421 (11%)

Query: 36  MASVTWPVLIVAI---PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVS 92
           M S+ W + +VAI   P V+V   I   Y +     +R      A I +   E   G+  
Sbjct: 160 MFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVR---AYLADINDGFNEVINGMSV 216

Query: 93  IRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEA--LQNLIILTAALLI---V 147
           I+ F+    F E   ++ +        S+       LR++   L+ L+ L +AL++   +
Sbjct: 217 IQQFRQQARFGE---RMGEAS-----RSHYMARMQTLRLDGFLLRPLLSLFSALILCGLL 268

Query: 148 LLPGKHLPGFVGLSLSYA------------LTLSSIQVIMTRWYCNLSNNIVSVERIRQF 195
           +L G    G + + + YA            + L++ Q +       L   +V+ ER+ + 
Sbjct: 269 MLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSM-------LQQAVVAGERVFEL 321

Query: 196 MHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVG 255
           M  P +      + +P  S    GRI+++++   YR +   VL+ I  +      V +VG
Sbjct: 322 MDGPRQQYG--NDDRPLQS----GRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVALVG 374

Query: 256 RTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN 315
            TGSGK+TL S L        G I +DG  + S+    LR  ++++ Q+P +   +   N
Sbjct: 375 HTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434

Query: 316 LDPLGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374
           +  LG   S+ ++W+A+E  QL      LP  L + + ++G N SVGQ+QL  L RVL++
Sbjct: 435 V-TLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493

Query: 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELV 434
             +IL+LDEATA+IDS T+  +Q+ +      +T++ +AHR+ TI ++D  +VL  G+ V
Sbjct: 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAV 553

Query: 435 E 435
           E
Sbjct: 554 E 554

Length = 592

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  155 bits (395), Expect = 1e-41
 Identities = 92/376 (24%), Positives = 166/376 (44%), Gaps = 23/376 (6%)

Query: 88  QGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV 147
           QG   +  F   D +         +  +        T       +A+  LI     L+I 
Sbjct: 206 QGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGL----SDAILLLI--AGLLVIG 259

Query: 148 LLPGKHLPGFVG-LSLSYAL--------TLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL 198
           LL         G L+   A          L + + +    + +L   I S  R+     +
Sbjct: 260 LLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLND---I 316

Query: 199 PPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTG 258
             + P +    +  A   +   +EL ++   Y       LK    T  +G +V ++GR+G
Sbjct: 317 LDQKPEVTFPDEQTA--TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSG 374

Query: 259 SGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318
           SGK+TL+  L    +P+ G I ++G++I S+  + LR  +S++ Q   LF G++R NL  
Sbjct: 375 SGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLR- 433

Query: 319 LGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376
           L     SD E+W A+++  L+  +   P  L++ + + G   S G+R+   L R LL   
Sbjct: 434 LANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493

Query: 377 RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEY 436
            + +LDE T  +D  T+  +  ++ E   G T++ V HR+  +   D  +VL  G+++E 
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553

Query: 437 DLPSKLMETNSAFSKL 452
              ++L+  N  + +L
Sbjct: 554 GTHAELLANNGRYKRL 569

Length = 573

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  154 bits (391), Expect = 1e-40
 Identities = 87/275 (31%), Positives = 145/275 (52%), Gaps = 16/275 (5%)

Query: 189 VERIRQFMHLPPEPPAIIEETKPPASWPS---HGRIELEDLKVRYRPNTPLVLKGITCTF 245
           + R+   +  P +P    EE     S PS    G +EL ++   Y P  P +++  + T 
Sbjct: 443 LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTL 502

Query: 246 KEGTRVGVVGRTGSGKTT---LISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP 302
           + G RV +VG +GSGK+T   L++ L++   P +G IL DG+    +  + L   ++++ 
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVLANSVAMVD 559

Query: 303 QEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
           Q+  LF G+VR NL   DP     D ++  A +   +   I+  P   D+ +++ G N S
Sbjct: 560 QDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617

Query: 360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI 419
            GQRQ   + R L++   IL+LDEAT+++D  T+ I+   +R    G T I VAHR+ TI
Sbjct: 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTI 675

Query: 420 TDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454
            D D  +VL  G++V+     +L     A+++L+ 
Sbjct: 676 RDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  152 bits (387), Expect = 1e-40
 Identities = 81/238 (34%), Positives = 133/238 (55%), Gaps = 4/238 (1%)

Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
            G +E +D+   Y  N+   ++ ++   K G  V +VG TG+GK+TLI+ L R+ +P++G
Sbjct: 332 KGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390

Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--YSDNEIWEAMEKCQ 335
           RILIDG DI ++    LR  ++++ Q+  LF  S+  N+  +G    +D E+  A E+ Q
Sbjct: 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIR-VGRPDATDEEMRAAAERAQ 449

Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
               I R P   D+ V + G   S G+RQ   + R LLK   IL+LDEAT+++D  T+A 
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509

Query: 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453
           ++  + E   G T   +AHR+ T+ ++D  +V   G +VE     +L+     F+ L+
Sbjct: 510 VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALL 567

Length = 588

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  151 bits (384), Expect = 2e-40
 Identities = 102/425 (24%), Positives = 169/425 (39%), Gaps = 24/425 (5%)

Query: 4   VSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLS 63
           + +D+  +       I  +  A       ++ +A ++ P  ++    +++A ++    L 
Sbjct: 116 LGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAP--LV 173

Query: 64  SARELMRMNGTTKAPIVN-FAAETS---QGVVSIRAFKMMDMFFENYLKLVDTDARLFFH 119
           S R   R      A +    AA+ +    G   + A   +           + D  L   
Sbjct: 174 SLR-AARAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQV---EEADRELTRA 229

Query: 120 SNAATEWLVLRIEALQNLII-LTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRW 178
              A     L   AL  L   L     +         G +       L L  +       
Sbjct: 230 ERRAAAATALG-AALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAA--FEA 286

Query: 179 YCNLSNNIVSVERIRQFMH-----LPPEPP-AIIEETKPPASWPSHGRIELEDLKVRYRP 232
           +  L      + R+R         L    P A        A       +EL DL   Y P
Sbjct: 287 FAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGY-P 345

Query: 233 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 292
             P VL G++     G RV ++G +GSGK+TL++ L  L++P  G + +DG+ + S+   
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405

Query: 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSS 350
           ++R ++S+  Q+  LF  +VR NL  L     +D E+W A+E+  L   +  LP  LD+ 
Sbjct: 406 EVRRRVSVCAQDAHLFDTTVRENLR-LARPDATDEELWAALERVGLADWLRALPDGLDTV 464

Query: 351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVI 410
           + + G   S G+RQ   L R LL    IL+LDE T  +D+ T   L   +     G TV+
Sbjct: 465 LGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVV 524

Query: 411 TVAHR 415
            + H 
Sbjct: 525 LITHH 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  150 bits (382), Expect = 3e-40
 Identities = 90/326 (27%), Positives = 154/326 (47%), Gaps = 12/326 (3%)

Query: 135 QNLIILTAALLIVLLP------GKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVS 188
           Q  I  T   +++ +       G+   G +    +    LS     +   Y  +   +  
Sbjct: 173 QTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTD 232

Query: 189 VERIRQFMHLPPEPPAIIEETKPPASWP-SHGRIELEDLKVRYRPNTPLVLKGITCTFKE 247
           +E   +   L      + +    P  WP   G +   ++   Y P  P +L GI+ T   
Sbjct: 233 ME---KMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPL 288

Query: 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 307
           G  V +VG +G+GK+T++  LFR  +  +G I IDG DI  +  + LR  + I+PQ+  L
Sbjct: 289 GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL 348

Query: 308 FRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366
           F  ++  N+       +  E+  A E  Q+   I  LP   D+ V + G   S G++Q  
Sbjct: 349 FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408

Query: 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFM 426
            + R +LK   IL+LDEAT+++D+ T+  +Q  +RE   G T + +AHR+ TI D+D  +
Sbjct: 409 AIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEII 468

Query: 427 VLSYGELVEYDLPSKLMETNSAFSKL 452
           VL  G +VE     +L+     ++++
Sbjct: 469 VLDNGRIVERGTHEELLAAGGLYAEM 494

Length = 497

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  151 bits (384), Expect = 1e-39
 Identities = 90/278 (32%), Positives = 145/278 (52%), Gaps = 10/278 (3%)

Query: 179 YCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY--RPNTPL 236
           Y  +   + + E++ +++   P     I  T   A     G IE +D+   Y  RP+ P 
Sbjct: 441 YSGMMQAVGASEKVFEYLDRKPN----IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVP- 495

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           VLKG+T T   G  V +VG +GSGK+T+ + L  L +P  G++L+DG+ +       L  
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555

Query: 297 KLSIIPQEPTLFRGSVRTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEG 355
           +++++ QEP LF GSVR N+   L    D EI  A +       I   P   D+ V ++G
Sbjct: 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615

Query: 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR 415
              S GQ+Q   + R L+++ R+L+LDEAT+++D+  + +LQ          TV+ +AHR
Sbjct: 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES--RSRASRTVLLIAHR 673

Query: 416 VPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453
           + T+  +D  +VL  G +VE     +LME    +  LV
Sbjct: 674 LSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  148 bits (375), Expect = 4e-39
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)

Query: 201 EPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSG 260
           +        K P +      +E   + V Y P     L+ ++ T   G RV +VG +G+G
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAG 360

Query: 261 KTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 320
           K+TL++ L   V+P  G I ++G+ +        R +++ +PQ P LF G++  N   + 
Sbjct: 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN---IR 417

Query: 321 MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376
           +     SD EI EA+E+  L   ++ LP  LD+ + + G   S GQ Q   L R  L+  
Sbjct: 418 LARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDA 477

Query: 377 RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL 428
            +L+LDE TA +D+ T+A +   +R    G TV+ V HR+     +D  +VL
Sbjct: 478 PLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score =  138 bits (349), Expect = 4e-38
 Identities = 71/223 (31%), Positives = 128/223 (57%), Gaps = 6/223 (2%)

Query: 216 PSH--GRIELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL 271
           P H  G ++ +++   Y  RP+T  VL+ ++ T   G    +VG +GSGK+T+++ L   
Sbjct: 5   PDHLKGIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63

Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-PLGMYSDNEIWEA 330
            +P+ G++L+DG  I     K L +K+S++ QEP LF  S++ N+   L   S   + EA
Sbjct: 64  YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEA 123

Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
            +K    + IS L    D+ V ++G   S GQ+Q   + R L++  ++L+LDEAT+++D+
Sbjct: 124 AQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183

Query: 391 ATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGEL 433
            ++  +Q+ + +     TV+ +AHR+ T+  +D  +VL  G +
Sbjct: 184 ESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score =  136 bits (345), Expect = 1e-34
 Identities = 77/242 (31%), Positives = 135/242 (55%), Gaps = 10/242 (4%)

Query: 217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN 276
            +G I + D+   Y   +  +L  I+ T K  ++  +VG +GSGK+TL   L    +  +
Sbjct: 470 LNGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528

Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---YSDNEIWEAMEK 333
           G IL++G  +  +    LR  ++ +PQEP +F GS+  NL  LG     S +EIW A E 
Sbjct: 529 GEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL-LLGAKENVSQDEIWAACEI 587

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393
            ++K  I  +P+   + +S+EG + S GQ+Q   L R LL  +++L+LDE+T+++D+ T+
Sbjct: 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647

Query: 394 AILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451
              ++I+         T+I VAHR+     SD  +VL +G+++E     +L++ N  ++ 
Sbjct: 648 ---KKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYAS 704

Query: 452 LV 453
           L+
Sbjct: 705 LI 706

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =  123 bits (312), Expect = 2e-33
 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 42/214 (19%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+E++  RY    P VL+ ++ + + G  + ++G +GSGK+TL   +  L+ P +GR+ 
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
           +DG DI      +L   +  +PQ+  LF GS+  N+                        
Sbjct: 61  LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96

Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD-AILQRI 399
                             S GQRQ   L R L    RILVLDE  + +D   + A+ Q I
Sbjct: 97  -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139

Query: 400 IREEFPGSTVITVAHRVPTITDSDMFMVLSYGEL 433
              +  G+T I +AHR  T+  +D  +VL  G +
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  132 bits (334), Expect = 2e-33
 Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 5/237 (2%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE EDL++   P+   +   +  T   G R+ +VG +G+GKT+L++AL   + P  G + 
Sbjct: 350 IEAEDLEI-LSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKA 338
           I+G+++  +  +  R  LS + Q P L  G++R N+  LG    SD ++ +A+E   +  
Sbjct: 408 INGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNV-LLGNPDASDEQLQQALENAWVSE 466

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
            +  LP  LD+ + D+    SVGQ Q   L R LL+  ++L+LDE TAS+D+ ++ ++ +
Sbjct: 467 FLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ 526

Query: 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455
            +       T + V H++  +   D   V+  G++V+    ++L +    F+ L+A 
Sbjct: 527 ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583

Length = 588

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score =  132 bits (333), Expect = 2e-33
 Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 18/284 (6%)

Query: 186 IVSVERIRQFMHLPPEPPAIIEE----------TKPPASWPS----HGRIELEDLKVRYR 231
           I  ++++  F+    E  A +E+           + PA  P      G +E   +   + 
Sbjct: 286 IGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEF- 344

Query: 232 PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL 291
            N+   +  ++   K G  V +VG TG+GKTTLI+ L R+ +P  G+ILIDG+DI ++  
Sbjct: 345 ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR 404

Query: 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDS 349
           + LR  ++ + Q+  LF  S+R N+  LG    +D E++EA +       I +     D+
Sbjct: 405 ESLRKSIATVFQDAGLFNRSIRENIR-LGREGATDEEVYEAAKAAAAHDFILKRSNGYDT 463

Query: 350 SVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTV 409
            V + G   S G+RQ   + R +LK   ILVLDEAT+++D  T+A ++  I       T 
Sbjct: 464 LVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTT 523

Query: 410 ITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453
             +AHR+ T+ ++D+ + L  G L+E     +L++ +  F KL+
Sbjct: 524 FIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLL 567

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  127 bits (322), Expect = 8e-32
 Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 2/236 (0%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           G IE  ++   Y       L+ I      G  V +VGR+GSGK+T+ + L R  + + G 
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL--DPLGMYSDNEIWEAMEKCQL 336
           IL+DG D+    L  LR +++++ Q   LF  ++  N+       YS  +I EA      
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459

Query: 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
              I+++   LD+ + + G   S GQRQ   + R LL+ + IL+LDEAT+++D+ ++  +
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519

Query: 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           Q  + E     T + +AHR+ TI  +D  +V+  GE+VE    ++L+  N  +++L
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQL 575

Length = 582

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  119 bits (302), Expect = 2e-31
 Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 33/241 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PE 275
           IEL DL V Y       LK I+    +G    ++G +G GK+TL+  L RL +     P+
Sbjct: 1   IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58

Query: 276 NGRILIDGLDICSMGLKD--LRTKLSIIPQEPTLFRGSVRTNLD----PLGMYSDNEIWE 329
            G +L+DG DI  + +    LR ++ ++ Q+P  F GS+  N+       G+    E+ E
Sbjct: 59  EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118

Query: 330 AMEKCQLKATISRLPMLLDSSVSDE--GENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
            +E+   KA        L   V D       S GQ+Q  CL R L     +L+LDE T++
Sbjct: 119 RVEEALRKAA-------LWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171

Query: 388 IDSATDAILQRIIREEFPGSTVITVAH------RVPTITDSDMFMVLSYGELVEYDLPSK 441
           +D  + A ++ +I E     T++ V H      RV     +D    L  G LVE+    +
Sbjct: 172 LDPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPTEQ 226

Query: 442 L 442
           +
Sbjct: 227 I 227

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  118 bits (297), Expect = 4e-30
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 10/228 (4%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+ +L  +Y  +    L G++   + G   G++G  G+GKTTL+  L  L++P +G IL
Sbjct: 5   IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
           + G D+       +R ++  +PQEP+L+   +VR NL+           EA E+ +    
Sbjct: 64  VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
           +  L    +  V       S G +Q   +   LL    +L+LDE T+ +D  +   +  +
Sbjct: 123 LFGLEDKANKKVRT----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178

Query: 400 IRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           +RE  +  G T++   H +    +  D  ++L+ G+++    P +L E
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226

Length = 293

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score =  121 bits (306), Expect = 8e-30
 Identities = 79/312 (25%), Positives = 141/312 (45%), Gaps = 13/312 (4%)

Query: 128 VLRIEALQNLIILTAALLIVLLPGKHLPG-FVGLSLSYALTLSSIQVIMTRWYCNLSNNI 186
             RI  LQ+L++   A L +   G+  PG  +  S+     L+ I   +  W    S   
Sbjct: 233 YFRI-VLQSLVLGLGAYLAI--DGEITPGMMIAGSILVGRALAPIDGAIGGWK-QFSGAR 288

Query: 187 VSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFK 246
            + +R+ + +   P     +   +P       G + +E++ +         L+GI+ + +
Sbjct: 289 QAYKRLNELLANYPSRDPAMPLPEP------EGHLSVENVTIVPPGGKKPTLRGISFSLQ 342

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 306
            G  + ++G +GSGK+TL   +  +  P +G + +DG D+     +     +  +PQ+  
Sbjct: 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE 402

Query: 307 LFRGSVRTNLDPLGMYSDNE-IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365
           LF G+V  N+   G  +D E I EA +   +   I RLP   D+ +   G   S GQRQ 
Sbjct: 403 LFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR 462

Query: 366 FCLGRVLLKRNRILVLDEATASIDSATD-AILQRIIREEFPGSTVITVAHRVPTITDSDM 424
             L R L    +++VLDE  +++D   + A+   I   +  G TV+ + HR   +   D 
Sbjct: 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDK 522

Query: 425 FMVLSYGELVEY 436
            +VL  G +  +
Sbjct: 523 ILVLQDGRIARF 534

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  112 bits (283), Expect = 2e-28
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 32/241 (13%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            +E+E+L   Y      +L  ++ +  +G   G++G  GSGK+TL+  L  L++P++G +
Sbjct: 2   MLEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEP-TLFRGSVR--------TNLDPLGMYSDNEIWEA 330
           L+DG DI S+  K+L  KL+ +PQ P   F  +V          +L   G  S  +    
Sbjct: 60  LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119

Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
            E   L+     L  L D  V +     S G+RQ   + R L +   IL+LDE T+ +D 
Sbjct: 120 EE--ALELL--GLEHLADRPVDE----LSGGERQRVLIARALAQETPILLLDEPTSHLDI 171

Query: 391 ATDAILQRIIRE--EFPGSTVITVAH------RVPTITDSDMFMVLSYGELVEYDLPSKL 442
           A    +  ++R+     G TV+ V H      R      +D  ++L  G++V    P ++
Sbjct: 172 AHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY-----ADHLILLKDGKIVAQGTPEEV 226

Query: 443 M 443
           +
Sbjct: 227 L 227

Length = 258

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  108 bits (271), Expect = 8e-28
 Identities = 65/213 (30%), Positives = 92/213 (43%), Gaps = 58/213 (27%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
           E+E+L  RY   T   L  ++ T K G  V +VG  GSGK+TL+ A+  L++P +G ILI
Sbjct: 1   EIENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58

Query: 282 DGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATIS 341
           DG DI  + L++LR ++  +P                                QL     
Sbjct: 59  DGKDIAKLPLEELRRRIGYVP--------------------------------QL----- 81

Query: 342 RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR 401
                            S GQRQ   L R LL    +L+LDE T+ +D A+   L  ++R
Sbjct: 82  -----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124

Query: 402 EEF-PGSTVITVAHRVPTITD-SDMFMVLSYGE 432
           E    G TVI V H        +D  +VL  G+
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  109 bits (275), Expect = 2e-27
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 27/229 (11%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            IE E+L  RY       LK ++   ++G RV ++G  GSGK+TL+  L  L++P +G +
Sbjct: 3   MIEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 280 LIDGLDICSM-GLKDLRTKLSIIPQEPT--LFRGSVRTNLD---PLGMYSDNEIW----E 329
           L+DGLD  S   L +LR K+ ++ Q P   LF  +V   +            EI     E
Sbjct: 62  LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121

Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
           A+E   L+  + R P  L           S GQ+Q   +  VL     IL+LDE TA +D
Sbjct: 122 ALELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170

Query: 390 -SATDAILQRI--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV 434
                 +L+ +  ++EE  G T+I V H +  + + +D  +VL  G+++
Sbjct: 171 PKGRRELLELLKKLKEEG-GKTIIIVTHDLELVLEYADRVVVLDDGKIL 218

Length = 235

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  114 bits (288), Expect = 3e-27
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 28/283 (9%)

Query: 182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
           L   I S  RI +     PE       T   A       + L ++   Y      VLKG+
Sbjct: 304 LGQVIASARRINEITEQKPEV--TFPTTSTAA--ADQVSLTLNNVSFTYPDQPQPVLKGL 359

Query: 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
           +   K G +V ++GRTG GK+TL+  L R  +P+ G IL++G  I       LR  +S++
Sbjct: 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV 419

Query: 302 PQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN- 357
            Q   LF  ++R NL    P    SD  + E +++  L+        LL+    D+G N 
Sbjct: 420 SQRVHLFSATLRDNLLLAAPNA--SDEALIEVLQQVGLEK-------LLE---DDKGLNA 467

Query: 358 W--------SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTV 409
           W        S G+++   + R LL    +L+LDE T  +D+ T+  +  ++ E     TV
Sbjct: 468 WLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTV 527

Query: 410 ITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           + + HR+  +   D   V+  G+++E     +L+     + +L
Sbjct: 528 LMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQL 570

Length = 574

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score =  113 bits (286), Expect = 4e-27
 Identities = 85/309 (27%), Positives = 143/309 (46%), Gaps = 13/309 (4%)

Query: 128 VLRIEALQNLIILTAALLIVLLPGKHLPG-FVGLSLSYALTLSSIQVIMTRWYCNLSNNI 186
            LR+ ALQ+ ++   A L++   G+  PG  +  S+     L+ I + +  W        
Sbjct: 251 ALRM-ALQSAVLGLGAWLVI--KGEITPGMMIAGSILSGRALAPIDLAIANWK-QFVAAR 306

Query: 187 VSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFK 246
            S +R+ + +   P     +    P       G + +E L          +LKGI+   +
Sbjct: 307 QSYKRLNELLAELPAAAERMPLPAP------QGALSVERLTAAPPGQKKPILKGISFALQ 360

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 306
            G  +G++G +GSGK+TL   L  +  P +G + +DG D+     + L   +  +PQ+  
Sbjct: 361 AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420

Query: 307 LFRGSVRTNLDPLGMYSDNE-IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365
           LF G++  N+   G  +D E + EA     +   I RLP   D+ + + G   S GQRQ 
Sbjct: 421 LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQR 480

Query: 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQR-IIREEFPGSTVITVAHRVPTITDSDM 424
             L R L     ++VLDE  +++DS  +A L   I+  +  G TV+ +AHR   +   D 
Sbjct: 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDK 540

Query: 425 FMVLSYGEL 433
            +VL  G +
Sbjct: 541 ILVLQDGRI 549

Length = 580

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  107 bits (269), Expect = 6e-27
 Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 27/208 (12%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
           EL++L   Y       L  I+ T K+G  V +VG  GSGK+TL+  L  L+ P +G +L+
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60

Query: 282 DGLDICSMGLKDLRTKLSIIPQEPT--LFRGSVRT----NLDPLGMYSDNEIW----EAM 331
           DG D+  + LK+LR K+ ++ Q P    F  +V       L+ LG+  + EI     EA+
Sbjct: 61  DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIEERVEEAL 119

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           E   L+    R P  L           S GQ+Q   +  VL     IL+LDE TA +D A
Sbjct: 120 ELVGLEGLRDRSPFTL-----------SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168

Query: 392 TDAILQRIIRE---EFPGSTVITVAHRV 416
               L  ++++   E  G T+I V H +
Sbjct: 169 GRRELLELLKKLKAE--GKTIIIVTHDL 194

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score =  104 bits (261), Expect = 3e-26
 Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 39/215 (18%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           + + ++   Y      VLK ++   K+G ++ ++GR+GSGK+TL+  L   ++P+ G I 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
           +DG+ +  +  K L + +S++ Q P LF  ++R NL                        
Sbjct: 61  LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95

Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400
                         G  +S G+RQ   L R+LL+   I++LDE T  +D  T+  L  +I
Sbjct: 96  --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141

Query: 401 REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVE 435
            E     T+I + H +  I   D  + L  G+++ 
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  103 bits (260), Expect = 2e-25
 Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 30/236 (12%)

Query: 221 IELEDLKVRYRPNTPLV--LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           +E+++L V +      V  L  ++ + K+G  +G+VG +GSGK+TL  A+  L++P +G 
Sbjct: 2   LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61

Query: 279 ILIDGLDICSMG---LKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQ 335
           I+ DG D+  +     K  R ++ ++ Q+P        ++L+P  M    +I E +    
Sbjct: 62  IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP-------MSSLNPR-MTIGEQIAEPLRIHG 113

Query: 336 L---KATISRLPMLLDSSVSDEGENW--------SVGQRQLFCLGRVLLKRNRILVLDEA 384
               K       +LL   V    E          S GQRQ   + R L    ++L+ DE 
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLP-EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEP 172

Query: 385 TASIDSATDA-ILQRI--IREEFPGSTVITVAHRVPTI-TDSDMFMVLSYGELVEY 436
           T+++D +  A IL  +  ++EE  G T++ + H +  +   +D   V+  G++VE 
Sbjct: 173 TSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  108 bits (272), Expect = 2e-25
 Identities = 80/262 (30%), Positives = 129/262 (49%), Gaps = 21/262 (8%)

Query: 185 NIV-----SVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR---YRPNTPL 236
           NIV     +  RIR  +    E P + + ++P       GR EL D+ +R   Y      
Sbjct: 278 NIVERGSAAYSRIRAMLA---EAPVVKDGSEPV----PEGRGEL-DVNIRQFTYPQTDHP 329

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
            L+ +  T K G  +G+ G TGSGK+TL+S + R  +   G I    + +  + L   R+
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389

Query: 297 KLSIIPQEPTLFRGSVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
           +L+++ Q P LF  +V  N+  LG    +  EI        +   I RLP   D+ V + 
Sbjct: 390 RLAVVSQTPFLFSDTVANNI-ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGER 448

Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD-AILQRIIREEFPGSTVITVA 413
           G   S GQ+Q   + R LL    IL+LD+A +++D  T+  IL   +R+   G TVI  A
Sbjct: 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWGEGRTVIISA 507

Query: 414 HRVPTITDSDMFMVLSYGELVE 435
           HR+  +T++   +V+ +G + +
Sbjct: 508 HRLSALTEASEILVMQHGHIAQ 529

Length = 569

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  101 bits (255), Expect = 3e-25
 Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 45/197 (22%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
           E+E+L V Y   T  VL  ++ + + G  VG++G  G+GK+TL+  L  L++P +G IL+
Sbjct: 1   EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58

Query: 282 DGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATIS 341
           DG D+ S+  K+L  K++ +PQ                          A+E   L     
Sbjct: 59  DGKDLASLSPKELARKIAYVPQ--------------------------ALELLGLAH--- 89

Query: 342 RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID----SATDAILQ 397
               L D   ++     S G+RQ   L R L +   IL+LDE T+ +D         +L+
Sbjct: 90  ----LADRPFNE----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141

Query: 398 RIIREEFPGSTVITVAH 414
           R+ RE   G TV+ V H
Sbjct: 142 RLARER--GKTVVMVLH 156

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  103 bits (259), Expect = 2e-24
 Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 30/233 (12%)

Query: 221 IELEDLKVRY---RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           IELE++   +      T   L  ++    +G   G++G +G+GK+TL+  +  L  P +G
Sbjct: 2   IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61

Query: 278 RILIDGLDICSM---GLKDLRTKLSIIPQEPTLFRGSVRTNLD----PLGMYSDNEIWEA 330
            + +DG D+ ++    L+ LR K+ +I Q   L   S RT  +    PL      E+   
Sbjct: 62  SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL--SSRTVFENVAFPL------ELAG- 112

Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENW----SVGQRQLFCLGRVLLKRNRILVLDEATA 386
           + K ++K  ++ L  L+   +SD+ + +    S GQ+Q   + R L    +IL+ DEAT+
Sbjct: 113 VPKAEIKQRVAELLELVG--LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170

Query: 387 SIDSA-TDAILQRI--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
           ++D   T +IL+ +  I  E  G T++ + H +  +    D   VL  G LVE
Sbjct: 171 ALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222

Length = 339

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  107 bits (267), Expect = 2e-24
 Identities = 61/170 (35%), Positives = 101/170 (59%), Gaps = 13/170 (7%)

Query: 266  SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 325
            S +F+     +G+IL+DG+DIC   LKDLR   SI+ QEP LF  S+  N+       ++
Sbjct: 1270 STVFK----NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK---FGKED 1322

Query: 326  EIWEAMEK-CQLKAT---ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381
               E +++ C+  A    I  LP   D++V   G++ S GQ+Q   + R LL+  +IL+L
Sbjct: 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLL 1382

Query: 382  DEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLS 429
            DEAT+S+DS ++ ++++ I +  +    T+IT+AHR+ +I  SD  +V +
Sbjct: 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432

Length = 1466

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  100 bits (252), Expect = 2e-24
 Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 28/240 (11%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IEL  L   +   T  VLKG+    + G  + ++G +GSGK+TL+  +  L+ P++G +L
Sbjct: 1   IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58

Query: 281 IDGLDICSMG---LKDLRTKLSIIPQEPTLFRG-SVRTNLD-PLGMY---SDNEIWE-AM 331
           IDG DI  +    L  LR ++ ++ Q   LF   +V  N+  PL  +   S+ EI E  +
Sbjct: 59  IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118

Query: 332 EKCQ---LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           EK +   L+      P  L           S G ++   L R L     +L+ DE TA +
Sbjct: 119 EKLEAVGLRGAEDLYPAEL-----------SGGMKKRVALARALALDPELLLYDEPTAGL 167

Query: 389 DSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445
           D     ++  +IR   +  G T I V H + T    +D   VL  G++V    P +L  +
Sbjct: 168 DPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  100 bits (250), Expect = 7e-24
 Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 30/233 (12%)

Query: 220 RIELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
            + + +L + Y         L  ++   + G  +G+VG +GSGK+TL   L  L +P +G
Sbjct: 3   LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62

Query: 278 RILIDGLDICSMG-LKDLRTKLSIIPQEPTL-------FRGSVRTNLDPLGMY-SDNEIW 328
            IL+DG  +      K     + ++ Q+P             +   L P G+  S   I 
Sbjct: 63  SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122

Query: 329 EAMEKCQLKATI-SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
           E +++  L  +   R P  L           S GQRQ   + R L+   ++L+LDE T++
Sbjct: 123 ELLDQVGLPPSFLDRRPHEL-----------SGGQRQRIAIARALIPEPKLLILDEPTSA 171

Query: 388 IDSATDA----ILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
           +D +  A    +L  + +E   G T + ++H +  +    D   V+  G++VE
Sbjct: 172 LDVSVQAQILNLLLELKKER--GLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222

Length = 252

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  102 bits (257), Expect = 2e-23
 Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 56/294 (19%)

Query: 192 IRQFMH---------LPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRP---------N 233
           +    H         +P      I          +   + + +L  RY            
Sbjct: 243 LSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERG 302

Query: 234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG--LDICSMGL 291
               +  ++   +EG  +G+VG +GSGK+TL   L  L+ P +G I+ DG  LD+    L
Sbjct: 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGEL 362

Query: 292 KDLRTKLSIIPQEPTLF---RGSVRTNL-DPLGMYSDNE-------IWEAMEKCQLKATI 340
           + LR ++ ++ Q+P      R +V   L +PL ++           + E +E   L    
Sbjct: 363 RRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF 422

Query: 341 -SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR- 398
             R P  L           S GQRQ   + R L    ++L+LDE      SA D  +Q  
Sbjct: 423 LDRYPHEL-----------SGGQRQRVAIARALALEPKLLILDEPV----SALDVSVQAQ 467

Query: 399 ------IIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445
                  ++EE  G T + ++H +  +   +D   V+  G +VE     K+ E 
Sbjct: 468 VLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520

Length = 539

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 96.3 bits (240), Expect = 9e-23
 Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+ DL   Y       ++ ++   +EG   G++G  G+GKTTL+  +  L+ P++G++ 
Sbjct: 2   LEVTDLTKSYGSKVQ-AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
           IDG+D        +R K+ ++  E  L+ R + R NL      +       + + ++KA 
Sbjct: 61  IDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNG------LSRKEIKAR 113

Query: 340 ISRLPMLLD--SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
           I+ L   L     +      +S G +Q   + R L+    ILVLDE T+ +D  T     
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173

Query: 398 RIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
             I++ +  G  VI  +H +  +    D  +VL  GE+V       L  
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222

Length = 245

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score =  100 bits (251), Expect = 1e-22
 Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 49/261 (18%)

Query: 177 RWYCNLSNNIVS----VERIRQFMHLPPEPPAIIEETKPPASWPSHG-----------RI 221
            W+ +  + I      + R+ +F        A+             G            I
Sbjct: 340 SWFIDNYDAIADWRATLLRLAEFRQ------ALEAAQMDTEKPARTGRRIDFDDNADHGI 393

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
            LE+L +R      L L  +    + G R+ + G +G+GKT+L+ AL  L    +GRI +
Sbjct: 394 TLENLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452

Query: 282 DGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLKA 338
                           L  +PQ P L +G++R  L   +    +SD E+   + K  L  
Sbjct: 453 PADS-----------ALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501

Query: 339 TISRLPMLLDSSVSDEGENW----SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
              RL         DE + W    S G++Q     R+LL + + + LDEAT+++D  T+ 
Sbjct: 502 LAERL---------DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETED 552

Query: 395 ILQRIIREEFPGSTVITVAHR 415
            L ++++EE P +TVI+V HR
Sbjct: 553 RLYQLLKEELPDATVISVGHR 573

Length = 604

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 96.6 bits (241), Expect = 4e-22
 Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 36/259 (13%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            +EL++++  +      VLK +    ++G  V ++G +G GK+TL+  +  L EP +G I
Sbjct: 3   ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGMYS------DNEIWEAM 331
           LIDG D+  +  +  R  ++++ Q   L+   +V  N+   L +        D  + E  
Sbjct: 61  LIDGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           +   L+  ++R P+ L           S GQRQ   L R L+++ ++ +LDE  +++   
Sbjct: 119 KLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNL--- 164

Query: 392 TDAILQRIIREEF------PGSTVITVAHRVPTI-TDSDMFMVLSYGELVEYDLPSKLME 444
            DA L+ ++R E        G+T I V H      T +D  +V++ G + +   P +L E
Sbjct: 165 -DAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223

Query: 445 TNSAFSKLVAEYRSSYKRN 463
             +  +  VA +  S   N
Sbjct: 224 RPA--NLFVAGFIGSPPMN 240

Length = 338

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 94.2 bits (235), Expect = 5e-22
 Identities = 77/248 (31%), Positives = 121/248 (48%), Gaps = 47/248 (18%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+E+L   Y PN    LK ++ +   G  V ++G +G+GK+TL+  L  LVEP +G +L
Sbjct: 1   IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59

Query: 281 IDGLDICSMG---LKDLRTKLSIIPQEPTLF-RGSVRTNL------------DPLGMYSD 324
           IDG DI  +    L+ LR ++ +I Q+  L  R SV  N+               G++  
Sbjct: 60  IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119

Query: 325 NEI---WEAMEKCQL--KATI--SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377
            E      A+E+  L  KA     +L               S GQ+Q   + R L+++ +
Sbjct: 120 EEKQRALAALERVGLLDKAYQRADQL---------------SGGQQQRVAIARALMQQPK 164

Query: 378 ILVLDEATASIDSATD----AILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGE 432
           +++ DE  AS+D A+      +L+RI REE  G TVI   H+V    + +D  + L  G 
Sbjct: 165 LILADEPVASLDPASSRQVMDLLKRINREE--GITVIVSLHQVDLAREYADRIVGLKDGR 222

Query: 433 LVEYDLPS 440
           +V +D P 
Sbjct: 223 IV-FDGPP 229

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 91.7 bits (229), Expect = 8e-22
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 46/216 (21%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+ +L  RY   T   L  I+ T ++G   G++G  G+GKTTLI  +  L++P++G I 
Sbjct: 1   IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
           + G DI     ++++ ++  +P+EP+L+   +VR NL      S                
Sbjct: 59  VLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLK----LSG--------------- 98

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
                                G +Q   L + LL    +L+LDE T+ +D  +      +
Sbjct: 99  ---------------------GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137

Query: 400 IREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
           +RE    G T++  +H +       D   +L+ G +
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 93.7 bits (233), Expect = 8e-22
 Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 16/221 (7%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
           E+E  +V Y      +LK I+  F+ G    +VG +G+GK+TLI  + RL++P  G ILI
Sbjct: 3   EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62

Query: 282 DGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATIS 341
           DG+DI ++ + DLR K+ ++ Q+P LF G+V+ N++   M    +  +      +     
Sbjct: 63  DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG--- 119

Query: 342 RLPMLLDSSVSDEG-ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400
                L+   +    +N S G+ Q   + R L     +L+LDE T+++D  +  I++ +I
Sbjct: 120 -----LNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174

Query: 401 RE--EFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEY 436
            +       TVI + H   +   I D   F  L+ G LVEY
Sbjct: 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAF--LNKGILVEY 213

Length = 241

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 23/237 (9%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+++L   Y P     LK +     +G  V ++G +G+GK+TL+ +L  LV+P +G IL
Sbjct: 4   IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62

Query: 281 IDGLDICSM---GLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAM----- 331
            +G+ I  +    L+ LR  + +I Q+  L  R SV  N+  LG       W ++     
Sbjct: 63  FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV-LLGRLGYTSTWRSLFGLFS 121

Query: 332 --EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
             +K Q    + R+ +L            S GQ+Q   + R L+++ +I++ DE  AS+D
Sbjct: 122 KEDKAQALDALERVGIL--DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179

Query: 390 SATD----AILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441
             +      IL+ I +E+  G TVI   H+V      +D  + L  G +V +D P+ 
Sbjct: 180 PESAKKVMDILKDINQED--GITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPAS 233

Length = 258

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 92.2 bits (230), Expect = 2e-21
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 16/205 (7%)

Query: 221 IELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           IEL+++   Y         LK +    + G  V +VG +GSGK+TL++ L  L +P +G 
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 279 ILIDGLDICSMGLKDL----RTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEK 333
           +LI+G D+  +  K+L    R K+  + Q   L    +V  N++ L +    +     ++
Sbjct: 62  VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE-LPLLIAGKSAGRRKR 120

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT- 392
                 +  +  L D  +  +    S GQ+Q   + R L+   +I++ DE T ++DS T 
Sbjct: 121 --AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178

Query: 393 ---DAILQRIIREEFPGSTVITVAH 414
                +L+ + +E   G T+I V H
Sbjct: 179 KEVLELLRELNKER--GKTIIMVTH 201

Length = 226

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 91.4 bits (228), Expect = 3e-21
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 20/214 (9%)

Query: 221 IELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I +ED    +      T   LK I     +G  V +VG  GSGK++L+SAL   +E  +G
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNE-IWEAMEKCQL 336
            + + G              ++ + QEP +  G++R N+   G   D E   + ++ C L
Sbjct: 61  SVSVPG-------------SIAYVSQEPWIQNGTIRENI-LFGKPFDEERYEKVIKACAL 106

Query: 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAI 395
           +  +  LP    + + ++G N S GQ+Q   L R +     I +LD+  +++D+     I
Sbjct: 107 EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166

Query: 396 LQRIIREEFP-GSTVITVAHRVPTITDSDMFMVL 428
            +  I        T I V H++  +  +D  +VL
Sbjct: 167 FENCILGLLLNNKTRILVTHQLQLLPHADQIVVL 200

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 90.3 bits (225), Expect = 3e-21
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 45/199 (22%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +EL+++  RY      VL  ++   + G  V ++G +GSGK+TL+  +  L EP++G IL
Sbjct: 1   LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58

Query: 281 IDGLDICSMG--LKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLK 337
           IDG D+  +   L  LR ++ ++ Q+  LF   +V  N+                     
Sbjct: 59  IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI--------------------- 97

Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
                L +             S GQ+Q   L R L     +L+LDE T+++D  T   ++
Sbjct: 98  ----ALGL-------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140

Query: 398 RIIRE--EFPGSTVITVAH 414
            +++      G TV+ V H
Sbjct: 141 ALLKSLQAQLGITVVLVTH 159

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 92.4 bits (230), Expect = 4e-21
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 18/223 (8%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I++E++   Y  +    LK ++    EG  V ++G  GSGK+T+   L  L++P++G I 
Sbjct: 8   IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEP-TLFRGSVRTNLDPLG------MYSDNEIWEAMEK 333
           IDG+ I    LK++R K+ II Q P   F G+  T  D +            ++ + ++ 
Sbjct: 68  IDGITISKENLKEIRKKIGIIFQNPDNQFIGA--TVEDDIAFGLENKKVPPKKMKDIIDD 125

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393
              K  +      LD     E +N S GQ+Q   +  VL     I++ DE+T+ +D    
Sbjct: 126 LAKKVGMED---YLDK----EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178

Query: 394 AILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELV 434
             +++I+ +  +    T+I++ H +     +D  +V S G+L+
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLI 221

Length = 271

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 73/254 (28%), Positives = 118/254 (46%), Gaps = 36/254 (14%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+E+L   Y PN    LK I      G  V ++G +G+GK+TL+  + RLVEP +G IL
Sbjct: 2   LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60

Query: 281 IDGLDICSMGLKDL---RTKLSIIPQEPTLF-RGSVRTNL------------DPLGMYSD 324
           ++G DI  +  K L   R ++ +I Q   L  R +V  N+              LG +S+
Sbjct: 61  LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120

Query: 325 NEIWEAMEKCQLKATISRLPML-LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
            +   A+        + R+ +       +D     S GQ+Q   + R L ++  +++ DE
Sbjct: 121 EDKERALS------ALERVGLADKAYQRAD---QLSGGQQQRVAIARALAQQPDLILADE 171

Query: 384 ATASIDSATDAI----LQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL 438
             AS+D  T       L+RI +E+  G TVI   H+V      +D  + L  GE+V    
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKED--GITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229

Query: 439 PSKLMETNSAFSKL 452
           PS+L   +     +
Sbjct: 230 PSEL--DDEVLRHI 241

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 90.7 bits (226), Expect = 8e-21
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 29/233 (12%)

Query: 221 IELEDLKVRYRPNTPLV--LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           IEL+++   +      V  LK ++ +  +G   G++GR+G+GK+TLI  +  L  P +G 
Sbjct: 2   IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 279 ILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGSVRTNLD----PLGMYSDNEIWEAM 331
           +L+DG D+  +  K+LR    ++ +I Q   L   S RT  +    PL      EI   +
Sbjct: 62  VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLL--SSRTVFENVALPL------EIA-GV 112

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENW----SVGQRQLFCLGRVLLKRNRILVLDEATAS 387
            K +++  +  L  L+   + D+ + +    S GQ+Q   + R L    ++L+ DEAT++
Sbjct: 113 PKAEIEERVLELLELVG--LEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170

Query: 388 IDSA-TDAILQRI--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436
           +D   T +IL  +  I  E  G T++ + H +  +    D   V+  GE+VE 
Sbjct: 171 LDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 93.0 bits (232), Expect = 3e-20
 Identities = 59/257 (22%), Positives = 115/257 (44%), Gaps = 55/257 (21%)

Query: 221 IELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--- 275
           +E+E+L V +         ++ ++   + G  +G+VG +GSGK+TL  AL  L+      
Sbjct: 6   LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65

Query: 276 -NGRILIDGLDICSMGLKDLR----TKLSIIPQEPTLFRGSVRTNLDPL----------- 319
            +G +++DG D+  +  +++R     ++++I Q+P        T+L+P+           
Sbjct: 66  TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM-------TSLNPVMTIGDQIREAL 118

Query: 320 -----GMYSD--NEIWEAMEKCQL--KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR 370
                G  ++      E +E+  L       R P  L           S G RQ   +  
Sbjct: 119 RLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQL-----------SGGMRQRVMIAM 167

Query: 371 VLLKRNRILVLDEATASIDSATDA----ILQRIIREEFPGSTVITVAHRVPTITD-SDMF 425
            L  + ++L+ DE T ++D  T A    +L+ + RE   G  V+ + H +  + + +D  
Sbjct: 168 ALALKPKLLIADEPTTALDVTTQAQILDLLKDLQREL--GMAVLFITHDLGVVAELADRV 225

Query: 426 MVLSYGELVEYDLPSKL 442
           +V+  GE+VE     ++
Sbjct: 226 VVMYKGEIVETGPTEEI 242

Length = 539

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 88.4 bits (220), Expect = 3e-20
 Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 53/230 (23%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
           E+EDL V Y      VL+ ++   K G  + +VG  G+GK+TL+ A+  L++P +G I +
Sbjct: 1   EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58

Query: 282 DGLDICSMGLKDLRTKLSIIPQE-------PTLFRGSVRTNLDP----LGMYSDNE---I 327
            G  +     +  R ++  +PQ        P   R  V   L          S  +   +
Sbjct: 59  FGKPL-----EKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113

Query: 328 WEAMEKCQLKA----TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
            EA+E+  L       I  L               S GQ+Q   L R L++   +L+LDE
Sbjct: 114 DEALERVGLSELADRQIGEL---------------SGGQQQRVLLARALVQDPDLLLLDE 158

Query: 384 ATASIDSATDAILQRIIRE---EFPGSTVITVAHRVPTITDSDMFMVLSY 430
             A +D  T   +  ++RE   E  G T++ V H        D+ +VL Y
Sbjct: 159 PFAGVDPKTQEDIYELLRELRRE--GMTILVVTH--------DLGLVLEY 198

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 89.1 bits (222), Expect = 4e-20
 Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 44/253 (17%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE----- 275
           IE+ DL + Y       LK I     +     ++G +G GK+TL+  L R+ +       
Sbjct: 8   IEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65

Query: 276 NGRILIDGLDICSMGLK--DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YSDNEIWE 329
            G +L+DG +I    +   +LR ++ ++ Q+P  F  S+  N+   G+      D E+ E
Sbjct: 66  EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-AYGLRLHGIKDKELDE 124

Query: 330 AMEKCQLKATI-----SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384
            +E    KA +      RL               S GQ+Q  C+ R L  +  +L++DE 
Sbjct: 125 IVESSLKKAALWDEVKDRL--------HKSALGLSGGQQQRLCIARALAVKPEVLLMDEP 176

Query: 385 TASIDS-ATDAILQRI--IREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDL 438
           T+++D  +T  I + I  +++++   T++ V H   +   ++D   F  L  GELVE+  
Sbjct: 177 TSALDPISTLKIEELITELKKKY---TIVIVTHNMQQAARVSDYTAFFYL--GELVEFG- 230

Query: 439 PSKLMETNSAFSK 451
                 T+  F+ 
Sbjct: 231 -----PTDKIFTN 238

Length = 253

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 29/212 (13%)

Query: 221 IELEDLKVRYRPNTPL---VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I++E+L   Y   TP     L  +    ++G  VG++G TGSGK+TLI  L  L++P +G
Sbjct: 3   IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62

Query: 278 RILIDGLDICSMG--LKDLRTKLSIIPQEP--TLFRGSVRTNLD--P--LGMYSDNEI-- 327
           +I+IDG+DI      L D+R K+ ++ Q P   LF  ++  ++   P  LG+ S+ EI  
Sbjct: 63  KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL-SEEEIEN 121

Query: 328 --WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
               AM    L           D S  +     S GQ++   +  V+    +IL+LDE T
Sbjct: 122 RVKRAMNIVGLDYED-----YKDKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPT 172

Query: 386 ASID-SATDAILQRI--IREEFPGSTVITVAH 414
           A +D    D IL +I  + +E+   T+I V+H
Sbjct: 173 AGLDPKGRDEILNKIKELHKEY-NMTIILVSH 203

Length = 287

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 87.9 bits (219), Expect = 7e-20
 Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 27/236 (11%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+E+L   Y  +   +L G++ T  EG  V ++GR G+GKTTL+  +  L+ P +G I 
Sbjct: 1   LEVENLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58

Query: 281 IDGLDICSMGLKDLRTKLSI--IPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLK 337
            DG DI  +     R +  I  +P+   +F   +V  NL  LG Y       A  + + K
Sbjct: 59  FDGRDITGLPP-HERARAGIGYVPEGRRIFPELTVEENLL-LGAY-------ARRRAKRK 109

Query: 338 ATISRL----PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA----SID 389
           A + R+    P L +          S G++Q+  + R L+ R ++L+LDE +      I 
Sbjct: 110 ARLERVYELFPRLKERR-KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV 168

Query: 390 SATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
                 ++ +  E   G T++ V        + +D   VL  G +V     ++L+ 
Sbjct: 169 EEIFEAIRELRDE---GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 84.7 bits (210), Expect = 7e-20
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 14/129 (10%)

Query: 262 TTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLSIIPQEPTLF-RGSVRTNLDPL 319
           +TL+  +  L++P +G IL+DG D   +   K LR ++ ++ Q+P LF   +VR NL   
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 320 GM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377
                +D    EA+E+  L   + R P              S GQ+Q   + R LLK+ +
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110

Query: 378 ILVLDEATA 386
           +L+LDE TA
Sbjct: 111 LLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 43/215 (20%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+E+L V Y  N P VL+ I+ + ++G    ++G  G+GK+TL+ A+  L++P +G I 
Sbjct: 5   IEVENLTVSYG-NRP-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62

Query: 281 IDGLDICSMGLKDLRTKLSI--IPQEP--------------TLFRGSVRTNLDPLGMYSD 324
           I G  +     +  R +L I  +PQ+                L R   +     L     
Sbjct: 63  IFGKPV-----RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117

Query: 325 NEIWEAMEKCQL----KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380
            ++ EA+E+  +       I  L               S GQ+Q   L R L +   +L+
Sbjct: 118 EKVDEALERVGMEDLRDRQIGEL---------------SGGQKQRVLLARALAQNPDLLL 162

Query: 381 LDEATASIDSATDAILQRIIREEF-PGSTVITVAH 414
           LDE    +D A    +  +++E    G TV+ V H
Sbjct: 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197

Length = 254

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 86.1 bits (214), Expect = 4e-19
 Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 38/254 (14%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            +E+E +   +      VL+ I  + ++G  V ++G +G GK+TL+  +  L +P +G +
Sbjct: 3   LLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEPTLF-----RGSVRTNLDPLGMYSDNEIWEAM--- 331
           L+DG       +      +  + QE  L        +V   L+  G         A    
Sbjct: 61  LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           E   L     + P  L           S G RQ   + R L  R ++L+LDE   ++D+ 
Sbjct: 116 ELVGLAGFEDKYPHQL-----------SGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164

Query: 392 TDAILQ----RIIREEFPGSTVITVAHRVP-TITDSDMFMVLS-----YGELVEYDLPSK 441
           T   LQ    R+  E     TV+ V H V   +  +D  +VLS      GE +E DLP  
Sbjct: 165 TREELQDELLRLWEET--RKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRP 222

Query: 442 LMETNSAFSKLVAE 455
            +  +  F +L  E
Sbjct: 223 RIRGDPEFLELREE 236

Length = 248

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 90.4 bits (224), Expect = 5e-19
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 20/291 (6%)

Query: 181 NLSNNIVSVERIRQFM-HLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK 239
           ++    VS++R+R F+ H   EP +I   T  P    S   I + +    +  + P  L 
Sbjct: 599 SIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNS---ITVHNATFTWARDLPPTLN 655

Query: 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
           GIT +  EG  V VVG+ G GK++L+SAL   ++   G + + G              ++
Sbjct: 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVA 702

Query: 300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS 359
            +PQ+  +   S+R N+      ++    + +E C L   +  LP    + + ++G N S
Sbjct: 703 YVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762

Query: 360 VGQRQLFCLGRVLLKRNRILVLDEATASIDS-ATDAILQRIIREE--FPGSTVITVAHRV 416
            GQ+Q   L R +     I + D+  +++D+     I + +I  E      T I V H +
Sbjct: 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI 822

Query: 417 PTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD 467
             +   D+ +V+S G++ E     +L++ + AF++ +  Y    ++  ++D
Sbjct: 823 SYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLED 873

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 84.4 bits (209), Expect = 5e-19
 Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 27/199 (13%)

Query: 232 PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG--LDICSM 289
           P  P VLKG+    + G  + ++G  G+GK+TL+  L  L+ P++G +LIDG  LD    
Sbjct: 2   PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61

Query: 290 GLKDLRTKLSIIPQEP--TLFRGSVRTNLD--PLGM-YSDNEIW----EAMEKCQLKATI 340
           GL + R ++ ++ Q+P   LF   V  ++   PL +  S+ E+     EA+         
Sbjct: 62  GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121

Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400
            R    L           S G+++   +   +  R  +L+LDE TA +D A    +  I+
Sbjct: 122 ERPTHCL-----------SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170

Query: 401 ---REEFPGSTVITVAHRV 416
              R E  G TV+   H V
Sbjct: 171 RRLRAE--GMTVVISTHDV 187

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 85.0 bits (211), Expect = 9e-19
 Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 21/239 (8%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--PE--- 275
           IE+E+L + Y       LK I     +     ++G +G GK+TL+ +L R+ +  P    
Sbjct: 2   IEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59

Query: 276 NGRILIDGLDICSMGLKD--LRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWE 329
            G++L DG DI    +    LR ++ ++ Q+P  F  S+  N        G+    E+ E
Sbjct: 60  EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE 119

Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
            +E+   KA    L   +   + D     S GQ+Q  C+ R L     +L+LDE T+++D
Sbjct: 120 IVEESLKKAA---LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176

Query: 390 SATDAILQRIIREEFPGSTVITVAHRVPT---ITDSDMFMVLSYGELVEYDLPSKLMET 445
                 ++ +I+E     T++ V H +     I+D   F     GELVEY    ++   
Sbjct: 177 PIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYD--GELVEYGPTEQIFTN 233

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 27/205 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +EL+ L   Y       L  ++ T + G  + ++G +G GKTTL+  +  L  P++G IL
Sbjct: 1   LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTN----LDPLGMYSDNEIWEAMEKCQ 335
           IDG D+   G+   R  + ++ Q+  LF   +V  N    L   G+           + +
Sbjct: 59  IDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR----ARVR 112

Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
               +  L  LL+    +     S GQ+Q   L R L +   +L+LDE      SA DA 
Sbjct: 113 ELLELVGLEGLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPL----SALDAK 164

Query: 396 LQRIIREEFP------GSTVITVAH 414
           L+  +REE        G T I V H
Sbjct: 165 LREELREELKELQRELGITTIYVTH 189

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 21/199 (10%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
            +E++   Y+  T  +L  ++     G  + + G+ G+GKTTL   L  L++  +G IL+
Sbjct: 1   RIENISFSYKKGT-EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59

Query: 282 DGLDICSMGLKDLRTKLSIIPQEPT--LFRGSVRTNLDP-LGMYSD--NEIWEAMEKCQL 336
           +G  I +   K+ R  +  + Q+    LF  SVR  L   L        +    ++   L
Sbjct: 60  NGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL 116

Query: 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
            A   R P+ L           S GQ+Q   +   LL    +L+ DE T+ +D      +
Sbjct: 117 YALKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165

Query: 397 QRIIREEFP-GSTVITVAH 414
             +IRE    G  VI + H
Sbjct: 166 GELIRELAAQGKAVIVITH 184

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 35/241 (14%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+E+L   Y       L+G++   + G  V ++GR G+GKTTL+  +  LV P +GRI+
Sbjct: 4   LEVENLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61

Query: 281 IDGLDICSMGLK-DLRTKLSI--IPQEPTLF-RGSVRTNLDPLGMY--SDNEIWEA-MEK 333
            DG DI   GL    R +L I  +P+   +F R +V  NL  LG Y   D E  E  +E+
Sbjct: 62  FDGEDI--TGLPPHERARLGIAYVPEGRRIFPRLTVEENLL-LGAYARRDKEAQERDLEE 118

Query: 334 C-----QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA-- 386
                 +LK   ++    L           S G++Q+  + R L+ R ++L+LDE +   
Sbjct: 119 VYELFPRLKERRNQRAGTL-----------SGGEQQMLAIARALMSRPKLLLLDEPSEGL 167

Query: 387 --SIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443
              I       ++ + +E   G T++ V        + +D   VL  G +V     ++L+
Sbjct: 168 APKIVEEIFEAIKELRKEG--GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225

Query: 444 E 444
            
Sbjct: 226 A 226

Length = 237

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 29/211 (13%)

Query: 221 IELEDLKVRYRPNTP--LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           IEL++L   Y         LKG++ + ++G  V +VG +GSGK+TL++ L  L  P +G 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 279 ILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG-SVRTNLD-PLGMYSDNEIWEAME 332
           + +DG DI  +  K+L    R  +  + Q   L    +   N++ PL + +     E  E
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LLAGVPKKERRE 119

Query: 333 KCQ-------LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
           + +       L   ++  P  L           S GQ+Q   + R L    +I++ DE T
Sbjct: 120 RAEELLERVGLGDRLNHYPSEL-----------SGGQQQRVAIARALANDPKIILADEPT 168

Query: 386 ASIDSATDAILQRIIRE--EFPGSTVITVAH 414
            ++DS T   +  ++RE  +  G+T++ V H
Sbjct: 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTH 199

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 24/226 (10%)

Query: 221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           I  + L  R+R    T   + G++ T K G   G++G  G+GKTT +  L  L+EP+ G 
Sbjct: 2   ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLG-MYSDNEIWEAMEKCQL 336
             +DG D+      + R +L  +     L+ R + R NL+    +Y        ++  +L
Sbjct: 62  ATVDGFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENLEYFAGLY-------GLKGDEL 113

Query: 337 KATI----SRLPM--LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
            A +     RL M  LLD  V      +S G RQ   + R L+    +L+LDE T  +D 
Sbjct: 114 TARLEELADRLGMEELLDRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169

Query: 391 ATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELV 434
                L+  IR+    G  ++   H +  +    D  +VL  G +V
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 82.6 bits (205), Expect = 4e-18
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 6/195 (3%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +++ +L   Y+  T   +  ++    +G   G++G  G+GKTT +  L   + P +G   
Sbjct: 1   LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
           I+G  I +   K  R  L   PQ   LF   +VR +L            E  E+ +L   
Sbjct: 61  INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR 119

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
           +  L    +          S G ++   L   L+    +L+LDE T+ +D A+   +  +
Sbjct: 120 VLGLTDKANKRART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDL 175

Query: 400 IREEFPGSTVITVAH 414
           I E   G ++I   H
Sbjct: 176 ILEVRKGRSIILTTH 190

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 83.1 bits (205), Expect = 6e-18
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 27/227 (11%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I LE++   Y   TP  L+ I    K+G  +G++G+ GSGK+TL   L  L+ P+ G++L
Sbjct: 2   IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60

Query: 281 IDGLDICSMG-LKDLRTKLSIIPQEP-TLFRGSVRTNLDPLGMYSDN------EIWE--- 329
           + G+D      L+ +R  + I+ Q P T F G  RT  + L    +N      EI +   
Sbjct: 61  VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG--RTVEEDLAFGPENLCLPPIEIRKRVD 118

Query: 330 -AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
            A+ +  L+    R P  L           S GQ Q   L  +L      L+ DE T+ +
Sbjct: 119 RALAEIGLEKYRHRSPKTL-----------SGGQGQCVALAGILTMEPECLIFDEVTSML 167

Query: 389 D-SATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELV 434
           D  +  A+L+RI +    G T++ + H +  + D+D  +V+  G++V
Sbjct: 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214

Length = 274

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 83.3 bits (206), Expect = 8e-18
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 20/238 (8%)

Query: 221 IELEDLKVRYRPNTPLVLKGIT-CTFK--EGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I+ E++   Y P TP+  KG+   +F+  EG+ V +VG TGSGK+TL+     L++P +G
Sbjct: 3   IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 278 RILIDGLDIC----SMGLKDLRTKLSIIPQ--EPTLFRGSVRTNLD--PLGM-YSDNEIW 328
            I I G  I     +  LK LR K+S++ Q  E  LF  +V  +++  P    +S++E  
Sbjct: 63  TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           E   K   K  +S      +  +S      S GQ +   +  V+     IL LDE  A +
Sbjct: 123 EKALKWLKKVGLS------EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176

Query: 389 DSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           D      + ++ ++ +  G TVI V H +  + + +D  +VL +G+L+++  P ++  
Sbjct: 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234

Length = 287

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 81.8 bits (202), Expect = 9e-18
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 19/212 (8%)

Query: 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 282
           LE  +V Y      +L  I+ + + G  + + G +G GK+TL+  +  L+ P +G +L +
Sbjct: 4   LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFE 63

Query: 283 GLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-PLGMYSDNEIWEAMEKCQLKATIS 341
           G D+ ++  +  R ++S   Q P LF  +V  NL  P  + +        ++      ++
Sbjct: 64  GEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR-----PDRAAALDLLA 118

Query: 342 RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT----DAILQ 397
           R   L DS ++      S G++Q   L R L    +IL+LDE T+++D +     + ++ 
Sbjct: 119 RFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIH 177

Query: 398 RIIREEFPGSTVIT--------VAHRVPTITD 421
           R +RE+      IT         A +V T+  
Sbjct: 178 RYVREQNVAVLWITHDKDQAIRHADKVITLQP 209

Length = 223

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 14/218 (6%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           ++LE+L  RY       L G++ T   G   G++G  G+GKTTL+  L  L  P +G I 
Sbjct: 1   LQLENLTKRYGKK--RALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
           IDG D+     K LR ++  +PQE  ++   +VR  LD +           +   ++KA 
Sbjct: 58  IDGQDVLKQPQK-LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG------IPSKEVKAR 110

Query: 340 ISRLPMLLD--SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
           +  +  L++       +  + S G R+   + + L+    IL++DE TA +D       +
Sbjct: 111 VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170

Query: 398 RIIREEFPGSTVITVAHRVPTITDS-DMFMVLSYGELV 434
            ++ E      VI   H V  +    +   VL+ G+LV
Sbjct: 171 NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 78.9 bits (195), Expect = 4e-17
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 34/196 (17%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           + +G++ T   G  + V G  G GKTTL+  L  L+ P++G +  +G  +          
Sbjct: 15  LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL---------A 65

Query: 297 KLSIIPQEPTLFRG---------SVRTNLD---PLGMYSDNEIWEAMEKCQLKATISRLP 344
           +    P    L+ G         S   NL     +   +   I +A+    L        
Sbjct: 66  EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA 125

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF 404
             L           S GQ++   L R+ L R  + +LDE T ++D A  A+L  ++R   
Sbjct: 126 AQL-----------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174

Query: 405 P--GSTVITVAHRVPT 418
              G  ++T    +  
Sbjct: 175 ARGGIVLLTTHQDLGL 190

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 79.1 bits (196), Expect = 7e-17
 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 36/210 (17%)

Query: 221 IELEDLKVRYRPNTP--LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           +E+ ++   Y         L+ I+ + +EG  V +VG +G GK+TL+  +  L  P +G 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLF--RGSVRTN----LDPLGMYSDNEIWE--- 329
           +L+DG  +              + Q+  L     +V  N    L+  G+    E  E   
Sbjct: 61  VLVDGEPVT-----GPGPDRGYVFQQDALLPWL-TVLDNVALGLELQGV-PKAEARERAE 113

Query: 330 -AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
             +E   L    +  P  L           S G RQ   L R L     +L+LDE  +++
Sbjct: 114 ELLELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSAL 162

Query: 389 DSATDAILQ----RIIREEFPGSTVITVAH 414
           D+ T   LQ     I RE   G TV+ V H
Sbjct: 163 DALTREQLQEELLDIWRET--GKTVLLVTH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 82.6 bits (205), Expect = 7e-17
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 24/227 (10%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +EL  +   +       L G++ T + G    ++G  G+GK+TL+  L  +  P++G IL
Sbjct: 9   LELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66

Query: 281 IDGLDICSMGLKDLRTK-LSIIPQEPTLFRG-SVRTNL-------DPLGMYSDNEIWEAM 331
           IDG  +     +D     ++ + QE +L    SV  N+          G+       +AM
Sbjct: 67  IDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID----RKAM 122

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
            + + +  ++RL   LD        + S+ QRQ+  + R L    R+L+LDE TA++   
Sbjct: 123 RR-RARELLARL--GLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179

Query: 392 TDAILQRIIRE---EFPGSTVITVAHRVPTITD-SDMFMVLSYGELV 434
               L  +IR    +  G  +I ++HR+  + + +D   VL  G +V
Sbjct: 180 ETERLFDLIRRLKAQ--GVAIIYISHRLDEVFEIADRITVLRDGRVV 224

Length = 500

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 79.6 bits (197), Expect = 7e-17
 Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 12/189 (6%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
             +  E+L   Y+     V+  ++     G  VG++G  G+GKTT    +  LV P++G+
Sbjct: 3   STLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60

Query: 279 ILIDGLDICSMGLKDLRTKLSI--IPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQ 335
           IL+D  DI  + +   R +L I  +PQE ++FR  +V  N+  +    + ++ +A  K +
Sbjct: 61  ILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119

Query: 336 LKATIS--RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393
           L A +    +  L DS       + S G+R+   + R L    + ++LDE  A +D    
Sbjct: 120 LDALLEEFHITHLRDSK----AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV 175

Query: 394 AILQRIIRE 402
             +QRII+ 
Sbjct: 176 IDIQRIIKH 184

Length = 243

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 79.1 bits (196), Expect = 9e-17
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 24/192 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +  E+L  RY      V+ G++ + K+G  VG++G  G+GKTT    +  LV+P++G+IL
Sbjct: 1   LRAENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58

Query: 281 IDGLDICSMGLKDLRTKLSII--PQEPTLFRG-SVRTNLDPL--GMYSDNEIWEAMEKCQ 335
           +DG DI  + +   R +L I   PQE ++FR  +V  N+  +        +  E      
Sbjct: 59  LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE------ 111

Query: 336 LKATISRLPMLLD----SSVSDE-GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
                 +L  LL+    + +      + S G+R+   + R L    + L+LDE  A +D 
Sbjct: 112 -----EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDP 166

Query: 391 ATDAILQRIIRE 402
                +Q+II+ 
Sbjct: 167 IAVQDIQKIIKI 178

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 19/245 (7%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE E++  RY      V   +     +G  + ++G +GSGKTT +  + RL+EP +G I 
Sbjct: 1   IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
           IDG DI      +LR K+  + Q+  LF     T  + + +      W    K +++   
Sbjct: 60  IDGEDIREQDPVELRRKIGYVIQQIGLF--PHMTVEENIALVPKLLKW---PKEKIRERA 114

Query: 341 SRLPMLLDSSVSDEGENW----SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
             L  L+    ++  + +    S GQ+Q   + R L     +L++DE   ++D  T   L
Sbjct: 115 DELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174

Query: 397 Q----RIIREEFPGSTVITVAHRV-PTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451
           Q    R+ +E   G T++ V H +      +D   ++  GE+V+   P +++   S  + 
Sbjct: 175 QEEFKRLQQEL--GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL--RSPAND 230

Query: 452 LVAEY 456
            VAE+
Sbjct: 231 FVAEF 235

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 78.3 bits (194), Expect = 2e-16
 Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+++L   +      VLKGI+ + ++G  V ++G +GSGK+TL+  L  L EP++G I 
Sbjct: 3   IEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60

Query: 281 IDGLDICSMG-LKDLRTKLSIIPQEPTLF 308
           +DG D+     +  LR K+ ++ Q+  LF
Sbjct: 61  VDGEDVGDKKDILKLRRKVGMVFQQFNLF 89

Length = 240

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 78.3 bits (193), Expect = 3e-16
 Identities = 49/231 (21%), Positives = 106/231 (45%), Gaps = 6/231 (2%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I  +++  +Y+ +    LK ++    +G    +VG  GSGK+T+   +  + + ++G I 
Sbjct: 8   IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEP-TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
            +   I     + LR  + I+ Q P   F GS+       G+ +    ++ M + ++   
Sbjct: 68  YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-RVSEA 126

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
           + ++ ML       E    S GQ+Q   +  VL     +++LDEAT+ +D      L  +
Sbjct: 127 LKQVDML--ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL 184

Query: 400 IRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSA 448
           +R+       T+I++ H +    ++D  +V++ G + +   P+++ +    
Sbjct: 185 VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235

Length = 269

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.4 bits (191), Expect = 6e-16
 Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 16/240 (6%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I +E +  RY       LK ++ +  EG  V +VG  GSGK+TL   L  L+ PE G I 
Sbjct: 6   IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEP------TLFRGSVRTNLDPLGMYSDNEIWEAMEKC 334
           + G+ +    + D+R ++ ++ Q P         +  V   L+ +G+  +    E +E+ 
Sbjct: 66  VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPRE----EMVERV 121

Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
                + ++ M     ++ E    S GQ+Q   +  VL  +  I++LDEAT+ +D     
Sbjct: 122 D--QALRQVGME--DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177

Query: 395 ILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
            +   +R+  E  G TV+++ H +     +D  +V++ GE++E   P ++ ++     ++
Sbjct: 178 EVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQEI 237

Length = 279

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 78.0 bits (193), Expect = 6e-16
 Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 46/248 (18%)

Query: 221 IELEDLKVRYRPNTPLV--LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-- 276
           +E+++L V +  +  +V  + G++   K+G  +G+VG +GSGK+ L  A+  L+   N  
Sbjct: 2   LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61

Query: 277 ---GRILIDGLDICSMGLKDLR----TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE 329
              G IL DG D+ S+  K+LR     ++++I Q+P        T+L+P+ M   ++I E
Sbjct: 62  IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPV-MTIGDQIAE 113

Query: 330 AMEKCQLKATISR-----LPMLLDSSVSDEGENW-------SVGQRQLFCLGRV-----L 372
            +       +        + +L    + D            S G RQ     RV     L
Sbjct: 114 VLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ-----RVMIAMAL 168

Query: 373 LKRNRILVLDEATASIDSATDA-ILQ--RIIREEFPGSTVITVAHRVPTITD-SDMFMVL 428
               ++L+ DE T ++D    A IL   + ++ E  G+ +I + H +  + + +D   V+
Sbjct: 169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHDLGVVAEIADRVAVM 227

Query: 429 SYGELVEY 436
             G +VE 
Sbjct: 228 YAGRIVEE 235

Length = 316

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 77.2 bits (191), Expect = 6e-16
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 29/247 (11%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+  +   +      +L G+      G  + ++G +GSGK+TL+  +  L+ P+ G IL
Sbjct: 9   IEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66

Query: 281 IDGLDICSM---GLKDLRTKLSIIPQEPTLFRG-SVRTN----LDPLGMYSDNEIWE-AM 331
           IDG DI  +    L ++R ++ ++ Q+  LF   +V  N    L       ++ I E  +
Sbjct: 67  IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126

Query: 332 EK---CQLKATISRL-PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
            K     L+   + L P  L           S G R+   L R +     +L LDE T+ 
Sbjct: 127 MKLELVGLRGAAADLYPSEL-----------SGGMRKRVALARAIALDPELLFLDEPTSG 175

Query: 388 IDSATDAILQRIIRE--EFPGSTVITVAHRVPTI-TDSDMFMVLSYGELVEYDLPSKLME 444
           +D  +  ++  +IRE  +  G TVI V H + ++ T +D   VL+ G+++    P +L+ 
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235

Query: 445 TNSAFSK 451
           ++  + +
Sbjct: 236 SDDPWVR 242

Length = 263

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.5 bits (185), Expect = 3e-15
 Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 221 IELEDLKVRYRPNTPL-VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
           +E+E+L  +Y   + +  L G++ +  +G  V ++G+ GSGK+T    +  L E   G++
Sbjct: 5   LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEP-TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
            IDG  + +  + +LR K+ ++ Q P   F G+   +    GM +     E M K   +A
Sbjct: 65  KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
            ++    +LD   + E    S GQ+Q   +  ++  R  I++LDE+T+ +D      + R
Sbjct: 125 LLA--VNMLDFK-TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181

Query: 399 IIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN 446
           +I E  E    TV+++ H +     SD  +V+  GE+++   PS+L  T+
Sbjct: 182 VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231

Length = 277

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 53/228 (23%)

Query: 221 IELEDLKVRY-------RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE 273
           +E+++LK  +       +      + G++ + KEG  +G+VG +G GK+TL   +  L E
Sbjct: 5   LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64

Query: 274 PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEK 333
           P +G IL +G DI  +  K+ R +                             + E +EK
Sbjct: 65  PTSGEILFEGKDITKL-SKEERRE----------------------------RVLELLEK 95

Query: 334 CQL-KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID-SA 391
             L +  + R P  L           S GQRQ   + R L    +++V DE  +++D S 
Sbjct: 96  VGLPEEFLYRYPHEL-----------SGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144

Query: 392 TDAILQRI--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436
              IL  +  ++EE  G T + ++H +  +   SD   V+  G++VE 
Sbjct: 145 QAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIAVMYLGKIVEI 191

Length = 268

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 74.6 bits (183), Expect = 4e-15
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 28/244 (11%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--PE-- 275
           +IE+ DLKV +      VL G+     + T   ++G +GSGK+TL+    RL+E  PE  
Sbjct: 3   KIEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60

Query: 276 -NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMY------SDNEI 327
            +G + +DG DI  M + +LR ++ ++ Q P      S+  N+  LG+       S  E+
Sbjct: 61  VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV-ALGLKLNRLVKSKKEL 119

Query: 328 WE----AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
            E    A+EK QL   +      LD+         S GQ+Q  C+ R L  +  +L+ DE
Sbjct: 120 QERVRWALEKAQLWDEVKDR---LDAPAG----KLSGGQQQRLCIARALAFQPEVLLADE 172

Query: 384 ATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
            TA++D    A ++ +  E     T++ V H        SD    L  G++VE+  P++ 
Sbjct: 173 PTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG-PTRE 231

Query: 443 METN 446
           + TN
Sbjct: 232 VFTN 235

Length = 250

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 18/252 (7%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE E++  RY       +  +  T +EG  + ++G +GSGKTT +  + RL+EP +G IL
Sbjct: 2   IEFENVSKRYGNKK--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
           IDG DI  +   +LR K+  + Q+  LF     T  + +        W   +K ++K   
Sbjct: 60  IDGEDISDLDPVELRRKIGYVIQQIGLF--PHLTVAENIATVPKLLGW---DKERIKKRA 114

Query: 341 SRLPMLLDSSVSDEGENW----SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
             L  L+    S+  + +    S GQ+Q   + R L     IL++DE   ++D  T   L
Sbjct: 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174

Query: 397 QRIIRE---EFPGSTVITVAHRV-PTITDSDMFMVLSYGELVEYDLPSKLMET--NSAFS 450
           Q  I+E   E  G T++ V H +   +  +D   V+  GE+V+YD P +++    N    
Sbjct: 175 QEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233

Query: 451 KLVAEYRSSYKR 462
               E     + 
Sbjct: 234 DFFGESERGLRL 245

Length = 309

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.9 bits (184), Expect = 5e-15
 Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 20/225 (8%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +++E+L   Y  +    LKGI    K+G    ++G  G+GK+TL   L  +++P +GRIL
Sbjct: 6   LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64

Query: 281 IDG--LDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNLD--PLGM-YSDNEIWEAMEK 333
            DG  +D    GL  LR  + ++ Q+P   LF  SV  ++    + +   ++E+ + ++ 
Sbjct: 65  FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124

Query: 334 CQLKATISRLPMLLDSSVSDEGENW-SVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
              +  I  L         D+  +  S GQ++   +  VL+   ++LVLDE TA +D   
Sbjct: 125 ALKRTGIEHL--------KDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176

Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTIT-DSDMFMVLSYGELV 434
            + + +++ E  +  G T+I   H +  +    D   V+  G ++
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221

Length = 283

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 34/209 (16%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+ ++   +   T   +  I+   K+G  V ++G +G GKTTL+  +    +P +G IL
Sbjct: 6   LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63

Query: 281 IDGLDICSMGLKDL---RTKLSIIPQEPTLF-RGSVRTN----LDPLGMYSDNEIW---- 328
           +DG DI      D+   +  + ++ Q   LF   +V  N    L         EI     
Sbjct: 64  LDGEDI-----TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           EA+E   L+    R P  L           S GQ+Q   L R L+   ++L+LDE  +++
Sbjct: 119 EALELVGLEGFADRKPHQL-----------SGGQQQRVALARALVPEPKVLLLDEPLSAL 167

Query: 389 DSATDAILQRIIRE---EFPGSTVITVAH 414
           D+     +++ ++E   E  G T + V H
Sbjct: 168 DAKLREQMRKELKELQREL-GITFVYVTH 195

Length = 352

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.9 bits (181), Expect = 8e-15
 Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 15/216 (6%)

Query: 233 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID------GLDI 286
           N   +LK IT      +  G++G +GSGK+TL+  L RL+E  + +I +D      G DI
Sbjct: 21  NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80

Query: 287 CSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PL---GMYSDNEIWEAMEKCQLKATIS 341
             +    LR ++ ++ Q+P  F   S+  N+  PL   G+    EI + +E+C  K  + 
Sbjct: 81  FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLW 140

Query: 342 RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR 401
           +    +   ++      S GQ+Q   + R L  + ++L++DE T+ ID      ++++I 
Sbjct: 141 K---EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197

Query: 402 EEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436
           E      ++ V+H    +   +D    L  GELVE+
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233

Length = 257

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 76.0 bits (188), Expect = 8e-15
 Identities = 51/204 (25%), Positives = 101/204 (49%), Gaps = 18/204 (8%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+  +  R+ P   +    ++ + K+G    ++G  G+GK+TL+  LF L +P++G I 
Sbjct: 5   LEMRGITKRF-PGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62

Query: 281 IDGLDICSMGLKD-LRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
           +DG ++     +D +R  + ++ Q   L    +V  N+  LG+           + + + 
Sbjct: 63  VDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI-ILGLEPSKGGLIDRRQARARI 121

Query: 339 -TISR---LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI-DSATD 393
             +S    LP+  D+ V+D     SVG++Q   + + L +  R+L+LDE TA +     D
Sbjct: 122 KELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177

Query: 394 AILQRI--IREEFPGSTVITVAHR 415
            + + +  +  E  G T+I + H+
Sbjct: 178 ELFEILRRLAAE--GKTIIFITHK 199

Length = 501

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 73.2 bits (181), Expect = 1e-14
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 20/228 (8%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+  L  R+       L  ++ + + G   G++G  G+GKTTL + +   + P +G +L
Sbjct: 1   LEVRGLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58

Query: 281 IDGLDICSMGLK-DLRTKLSIIP--QEPTLFRG-SVRTNLD-PLGMYSDNEIWEAMEKCQ 335
            DG DI   GL      +L I    Q P LF   +V  N+       + + +  A  + +
Sbjct: 59  FDGEDIT--GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE 116

Query: 336 LKATISRLPMLLD----SSVSDE-GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
            +    R   LL+    + ++D      S GQ++   + R L    ++L+LDE  A ++ 
Sbjct: 117 EREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176

Query: 391 A-TDAILQRI--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV 434
             T+ + + I  +RE   G TV+ V H +  +   +D   VL  G ++
Sbjct: 177 EETEELAELIRELRER--GITVLLVEHDMDVVMSLADRVTVLDQGRVI 222

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.5 bits (180), Expect = 1e-14
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 19/219 (8%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--PEN---GRILIDGLDICSMGLK 292
           LKGI+   +E + V  +G +G GK+T +    R+ +  P     G I IDG +I   G++
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78

Query: 293 --DLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWEAMEKCQLKATISRLPML 346
             +LR  + ++ Q P  F  S+  N    L   G+  +  I + +E+  LK     L   
Sbjct: 79  VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE-TLKGAA--LWDE 135

Query: 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPG 406
           +   + +     S GQ+Q  C+ R +     +L++DE  +++D  + A ++ +I E    
Sbjct: 136 VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD 195

Query: 407 STVITVAH---RVPTITDSDMFMVLSYGELVEYDLPSKL 442
            T++ V H   +   ++D   F  +  GE+VEYD   K+
Sbjct: 196 YTIVIVTHNMQQAARVSDKTAFFYM--GEMVEYDDTKKI 232

Length = 250

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 62/235 (26%), Positives = 117/235 (49%), Gaps = 25/235 (10%)

Query: 221 IELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
           IE+++L  +Y+ +     L  ++   K+G  + ++G  GSGK+T +  +  L+E E+G+I
Sbjct: 5   IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEP-TLFRGS-----VRTNLDPLGM-YSD--NEIWEA 330
           +IDG  +    + D+R K+ ++ Q P   F G+     V   L+  G+ + +    + EA
Sbjct: 65  IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124

Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
           +E   ++    R P  L           S GQ+Q   +   +  R +I++LDEAT+ +D 
Sbjct: 125 LELVGMQDFKEREPARL-----------SGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173

Query: 391 ATDAILQRI---IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL 442
                L +    IR+++   TVI++ H +  +  SD  +V+  G++     P +L
Sbjct: 174 EGRLELIKTIKGIRDDY-QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227

Length = 279

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 47/241 (19%)

Query: 221 IELEDLKVRYRPNTPLV--LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           IEL+++   +      +  L  ++     G   GV+G +G+GK+TLI  +  L  P +GR
Sbjct: 2   IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 279 ILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGSVRTNLD----PLGMYSDNEIWEAM 331
           +L+DG D+ ++  K+LR    ++ +I Q   L   S RT  D    PL      E+    
Sbjct: 62  VLVDGQDLTALSEKELRKARRQIGMIFQHFNLL--SSRTVFDNVALPL------EL-AGT 112

Query: 332 EKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
            K ++KA ++ L  L+   +SD+ +      S GQ+Q   + R L    ++L+ DEAT++
Sbjct: 113 PKAEIKARVTELLELVG--LSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 388 IDSA-TDAILQ--RIIREEFPGSTV--IT--------VAHRVPTITDSDMFMVLSYGELV 434
           +D A T +IL+  + I  E  G T+  IT        +  RV          V+  G LV
Sbjct: 171 LDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRV---------AVIDAGRLV 220

Query: 435 E 435
           E
Sbjct: 221 E 221

Length = 343

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 24/180 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+++L   +      VLKGI  T K+G  V ++G +GSGK+TL+  +  L EP++G I+
Sbjct: 1   IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58

Query: 281 IDGLDICSMG--LKDLRTKLSIIPQEPTLF-RGSVRTN--LDP---LGMYSDNEIWEAME 332
           IDGL +      + +LR K+ ++ Q+  LF   +V  N  L P    GM        A+E
Sbjct: 59  IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALE 118

Query: 333 ---KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
              K  L       P  L           S GQ+Q   + R L    ++++ DE T+++D
Sbjct: 119 LLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMNPKVMLFDEPTSALD 167

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 24/204 (11%)

Query: 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 282
           L+++  ++     ++L  +  T ++G    ++G +GSGK+TL++ +  L + ++G++ ++
Sbjct: 1   LKNISKKFG--DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58

Query: 283 GLDICSMGLKD----LRTKLSIIPQEPTLFRG-SVRTNLDPLGM-YSDNEIWEAMEKCQL 336
           G +   +  K      R KL  + Q   L    +V  NLD LG+ Y      E  EK   
Sbjct: 59  GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD-LGLKYKKLSKKEKREK--K 115

Query: 337 KATISRLPMLLD-----SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           K  + ++ + L        +S        G++Q   L R +LK   +++ DE T S+D  
Sbjct: 116 KEALEKVGLNLKLKQKIYELSG-------GEQQRVALARAILKPPPLILADEPTGSLDPK 168

Query: 392 TDAILQRIIREEF-PGSTVITVAH 414
               +  ++ E    G T+I V H
Sbjct: 169 NRDEVLDLLLELNDEGKTIIIVTH 192

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 32/210 (15%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I++ DL V +   T  VL G+  + +EG+ VG+VG  G+GKTTL+ A+   + P  G +L
Sbjct: 4   IDVSDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTL-FRGSVR-----------TNLDPLGMYSDNEIW 328
           + G D+ ++  +    +++ +PQ+ +L F   VR           +  D         + 
Sbjct: 62  VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
            AME+  +           D  V+    + S G+RQ   L R L +   +L+LDE TAS+
Sbjct: 122 RAMERTGVAQ-------FADRPVT----SLSGGERQRVLLARALAQATPVLLLDEPTASL 170

Query: 389 D----SATDAILQRIIREEFPGSTVITVAH 414
           D      T  +++R++ +   G T +   H
Sbjct: 171 DINHQVRTLELVRRLVDD---GKTAVAAIH 197

Length = 402

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 71.0 bits (175), Expect = 2e-14
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 50/208 (24%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENGRILIDGLDICSMGLKDL 294
           +LK ++   K G    ++G +G+GK+TL++AL   R     +G +LI+G  +     +  
Sbjct: 24  LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL---DKRSF 80

Query: 295 RTKLSIIPQE----PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSS 350
           R  +  +PQ+    PTL   +VR  L    M++              A +  L       
Sbjct: 81  RKIIGYVPQDDILHPTL---TVRETL----MFA--------------AKLRGL------- 112

Query: 351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTV 409
                   S G+R+   +   L+    +L LDE T+ +DS++   +  ++R     G T+
Sbjct: 113 --------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164

Query: 410 ITVAHRVPTITDSDMF---MVLSYGELV 434
           I   H+ P+    ++F   ++LS G ++
Sbjct: 165 ICSIHQ-PSSEIFELFDKLLLLSQGRVI 191

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 23/233 (9%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+EDL  RY+  T   LKG++ +  EG++  ++G  G+GK+TL+  L  +  P+ GR+ 
Sbjct: 5   IEVEDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNL--DPLGM-----YSDNEIWEAM 331
           + G ++ +   K +R+K+ ++ Q+P   +F  +V  ++   P+ M       +  + EA+
Sbjct: 64  VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           +  ++     + P  L           S GQ++   +  VL     ++VLDE  A +D  
Sbjct: 124 KAVRMWDFRDKPPYHL-----------SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172

Query: 392 TDAILQRII-REEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
               L  I+ R    G TVI   H V    + +D  +VL  G ++     S L
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225

Length = 274

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 29/238 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +  E+L V Y      +L  ++ +   G    ++G  G GK+TL+    RL+ P++G + 
Sbjct: 3   LRTENLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIW----------- 328
           +    I  +  + L  +L+++PQ      G +VR  L   G      +W           
Sbjct: 61  LGDKPISMLSSRQLARRLALLPQHHLTPEGITVR-ELVAYGRSPWLSLWGRLSAEDNARV 119

Query: 329 -EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
            +AME+ ++         L D  ++D     S GQRQ   L  VL +   +++LDE T  
Sbjct: 120 NQAMEQTRINH-------LADRRLTD----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168

Query: 388 IDSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443
           +D      L R++RE    G TV+TV H +   +   D  +VL+ G ++    P ++M
Sbjct: 169 LDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226

Length = 255

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 17/201 (8%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           + L+ ++  Y    P+       TF +G    +VG +GSGK+TL++ +     P++GR+L
Sbjct: 1   VRLDKIRFSYG-EQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
           I+G+D+ +    D    +S++ QE  LF   +V  N+  LG+ S      A ++  ++  
Sbjct: 57  INGVDVTAAPPAD--RPVSMLFQENNLFAHLTVEQNVG-LGL-SPGLKLTAEDRQAIEVA 112

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
           ++R  + L           S G+RQ   L RVL++   +L+LDE  A++D A  A +  +
Sbjct: 113 LAR--VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170

Query: 400 I----REEFPGSTVITVAHRV 416
           +     E     TV+ V H+ 
Sbjct: 171 VLDLHAET--KMTVLMVTHQP 189

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 27/250 (10%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--N 276
           G I ++ L+V Y  NT  VL  ++   + G  + ++G++G GKTTL+ A+   V+     
Sbjct: 4   GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61

Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQL 336
           GRI I   D+        +  L+++ Q   LF         P     DN  +    +   
Sbjct: 62  GRIAIADRDLTH--APPHKRGLALLFQNYALF---------PHLKVEDNVAFGLRAQKMP 110

Query: 337 KATISR--LPMLLDSSVSDEGENW----SVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
           KA I+      L    + D   +     S G +Q   + R +     +L+LDE  +++D+
Sbjct: 111 KADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDA 170

Query: 391 ATDAILQRIIR---EEFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPSKLMETN 446
              A ++  I    EE P  T++ V H +   +T +D   ++  G L  +  P  L +  
Sbjct: 171 NIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230

Query: 447 SAFSKLVAEY 456
           +      AE+
Sbjct: 231 A--DGFAAEF 238

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 29/232 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I  E++   Y P     L+ ++    +G  V + G +G+GK+TL+  ++    P  G+IL
Sbjct: 2   IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60

Query: 281 IDGLDICSMGLKD---LRTKLSIIPQEPTLF-RGSVRTN----LDPLGMYSD---NEIWE 329
           ++G D+  +  ++   LR ++ ++ Q+  L    +V  N    L  +G         + E
Sbjct: 61  VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120

Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
            ++   LK     LP  L           S G++Q   + R ++ +  +L+ DE T ++D
Sbjct: 121 VLDLVGLKHKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169

Query: 390 SAT-DAILQRIIREEFP--GSTVITVAHRVPTITDSDM-FMVLSYGELVEYD 437
                 I++  + EE    G+TV+   H +  +       + L  G LV  +
Sbjct: 170 PDLSWEIMR--LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219

Length = 223

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 73.8 bits (182), Expect = 4e-14
 Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 35/217 (16%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I LE+L + Y      +L+ ++ T   G R+G+VGR G+GK+TL+  L   +EP++G + 
Sbjct: 4   ITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61

Query: 281 IDG-------------------LDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 321
                                 LD    G  +LR  L+ + +   L         DP   
Sbjct: 62  RPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA-------DPDDE 114

Query: 322 YSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENW---SVGQRQLFCLGRVLLKRNR 377
               E+   +E+       +R    L      DE       S G R+   L R LL+   
Sbjct: 115 LLA-ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPD 173

Query: 378 ILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
           +L+LDE T  +D  +   L+  ++  +PG TVI V+H
Sbjct: 174 LLLLDEPTNHLDLESIEWLEDYLK-RYPG-TVIVVSH 208

Length = 530

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 72.9 bits (179), Expect = 9e-14
 Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 26/255 (10%)

Query: 187 VSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFK 246
           V+  +I +    P    A     +    W +   +EL +++  Y+ N    +  I  T K
Sbjct: 294 VAFNKIAKLELAPY--KADFPRPQAFPDWKT---LELRNVRFAYQDNA-FHVGPINLTIK 347

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 306
            G  V ++G  GSGK+TL   L  L +P++G IL+DG  + +  L+D R   S +  +  
Sbjct: 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYH 407

Query: 307 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366
           LF       L P G  S   I + +++ +L    S    L D   S+     S GQ++  
Sbjct: 408 LF----DQLLGPEGKASPQLIEKWLQRLELAHKTS----LNDGRFSN--LKLSTGQKKRL 457

Query: 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRII-REEFP-----GSTVITVAHRVPTIT 420
            L   LL+   ILVLDE  A  D A     +R   +   P     G T+  ++H      
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPA----FRREFYQVLLPLLKEQGKTIFAISHDDHYFI 513

Query: 421 DSDMFMVLSYGELVE 435
            +D  + +  G+L E
Sbjct: 514 HADRLLEMRNGQLSE 528

Length = 546

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 32/205 (15%)

Query: 221 IELEDLKVRYRPNTPL---VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I L +    +   TPL    L G++    EG  V V+G  G+GK+TL++A+   ++P +G
Sbjct: 2   ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61

Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEP--------TLF--------RGSVRTNLDPLGM 321
           +ILIDG+D+    +      L+ + Q+P        T+         RG  R     L  
Sbjct: 62  QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSAL-- 119

Query: 322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381
              NE   +      +  ++RL + L++ +SD     S GQRQ   L    L   +IL+L
Sbjct: 120 ---NERRRS----SFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172

Query: 382 DEATASIDSATDAIL----QRIIRE 402
           DE TA++D  T   +     +I+ E
Sbjct: 173 DEHTAALDPKTAEFVMELTAKIVEE 197

Length = 263

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 28/236 (11%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+ ++  R+       L  +      G+ V ++G +GSGK+TL+  +  L +P++GRI 
Sbjct: 1   IEIANISKRFGSFQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTN-------LDPLGMYSDNEIWEAME 332
           ++G D   +  +D   K+  + Q   LF+  +VR N                  + E +E
Sbjct: 59  LNGQDATRVHARD--RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLE 116

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
             QL+    R P  L           S GQRQ   L R L    ++L+LDE   ++D+  
Sbjct: 117 LVQLEGLGDRYPNQL-----------SGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165

Query: 393 DAILQRIIR---EEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
              L+  +R   +E   +TV  V H      + +D  +V+S G++ +   P ++ +
Sbjct: 166 RKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 19/238 (7%)

Query: 221 IELEDLKVRYRPNTPL-------VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE 273
           +E+ +L   +R  T L        +K ++ T +EG  + ++G  GSGK+TL   L  ++E
Sbjct: 5   LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64

Query: 274 PENGRILIDGLDICSMGLKDLRTKL-SIIPQEP-TLF--RGSVRTNLD-PLGMYSDNEIW 328
           P +G ILI+   +   G    R+K   +I Q+P T    R  +   LD PL + +D E  
Sbjct: 65  PTSGEILINDHPL-HFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE 123

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           +  ++  +  T+  + +L D   +      + GQ+Q   L R L+ R +I++ DEA AS+
Sbjct: 124 QRRKQ--IFETLRMVGLLPD-HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASL 180

Query: 389 DSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443
           D +  + L  ++ E  E  G + I V   +  I   SD  +V+  GE+VE    + ++
Sbjct: 181 DMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238

Length = 267

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 31/228 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+E++  R+   T   L  I+ + ++G   G++G  G+GKTT I  +  ++ P++G +L
Sbjct: 1   LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58

Query: 281 IDG--LDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPL----GM---YSDNEIWEA 330
            DG  LDI        R ++  +P+E  L+    V   L  L    G+    +   I E 
Sbjct: 59  FDGKPLDI------AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEW 112

Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
           +E+ +L           +  V    E  S G +Q       ++    +L+LDE  + +D 
Sbjct: 113 LERLELSE-------YANKRV----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161

Query: 391 ATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436
               +L+ +IRE    G TVI   H++  + +  D  ++L+ G  V Y
Sbjct: 162 VNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 17/196 (8%)

Query: 227 KVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD 285
            VR+     P+       T   G  V ++G +G+GK+TL++ +     P +G ILI+G+D
Sbjct: 6   DVRFSYGHLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD 62

Query: 286 ICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP 344
                       +S++ QE  LF   +V  N+  LG+ S      A ++ +++A  ++  
Sbjct: 63  H--TASPPAERPVSMLFQENNLFAHLTVAQNIG-LGL-SPGLKLNAEQREKVEAAAAQ-- 116

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD----AILQRII 400
           + L   +       S GQRQ   L R L++   IL+LDE  +++D A      A++ ++ 
Sbjct: 117 VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176

Query: 401 REEFPGSTVITVAHRV 416
            E     T++ V H  
Sbjct: 177 DER--KMTLLMVTHHP 190

Length = 231

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 15/211 (7%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-EN----GRILIDGLDICS--MG 290
           L GI+  F+E     ++G +G GK+T +  L R+ +  EN    G I  +G +I    M 
Sbjct: 20  LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79

Query: 291 LKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWEAMEKCQLKATISRLPML 346
           L +LR ++ ++ Q+PT F  SV  N    L   G+     I + +E+   +A I +    
Sbjct: 80  LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-- 137

Query: 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPG 406
              ++    + +S GQ+Q  C+ R L  R ++++LDE T+++D  + + ++  + E    
Sbjct: 138 -KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196

Query: 407 STVITVAHRVPTITD-SDMFMVLSYGELVEY 436
            T I V H +      SD    L  G+L+E 
Sbjct: 197 YTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227

Length = 251

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 65/252 (25%), Positives = 116/252 (46%), Gaps = 37/252 (14%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR---LVE-- 273
           G+I ++DL + Y       LK I    +E     ++G +G GK+T +  L R   L+   
Sbjct: 2   GKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59

Query: 274 PENGRILIDGLDI--CSMGLKDLRTKLSIIPQEPTLFRGSVRTNL--DPL--GMYSDNEI 327
              G +L+DG DI    + +  LR ++ ++ Q+P  F  S+  N+   P   G+    ++
Sbjct: 60  KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKL 119

Query: 328 WEAMEKCQLKATI-----SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382
            E +EK    A +      RL     S++   G     GQ+Q  C+ R L     +L++D
Sbjct: 120 DEIVEKSLKGAALWDEVKDRLK---KSALGLSG-----GQQQRLCIARALAVEPEVLLMD 171

Query: 383 EATASIDSATDAILQRIIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDLP 439
           E T+++D  +   ++ +I+E     T++ V H   +   I+D   F +   GE+VE+   
Sbjct: 172 EPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLN--GEIVEFG-- 227

Query: 440 SKLMETNSAFSK 451
               +T   F+ 
Sbjct: 228 ----DTVDLFTN 235

Length = 250

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 69.6 bits (170), Expect = 2e-13
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 25/251 (9%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--------V 272
           IE+E+    Y       +K +T    +     ++G +G GKTTL+ ++ R+        V
Sbjct: 4   IEIENFSAYY--GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61

Query: 273 EPENGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNE 326
           E   G+I   G DI    + + + R K+ ++ Q+PT F  S+  N        G+ S ++
Sbjct: 62  E---GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118

Query: 327 IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386
           +   +E+   KA    L   + S ++  G   S GQ+Q  C+ R L     +++LDE T+
Sbjct: 119 LDRIVEESLKKAA---LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTS 175

Query: 387 SIDSATDAILQRIIREEFPGSTVITVAHRVP-TITDSDMFMVLSYGELVEYDLPSKLMET 445
           ++D      +++++ E     T++ V H +   I  +D    +  GEL+EY    +++E 
Sbjct: 176 ALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235

Query: 446 NSAFSKLVAEY 456
               +KL  EY
Sbjct: 236 PK--NKLTEEY 244

Length = 250

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 26/207 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE  ++   Y PN    L GI  +   G  V +VG +G+GK+TL+  +++   P +G I 
Sbjct: 1   IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59

Query: 281 IDGLDICSMGLKD-----LRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQ 335
           ++G D+    L+      LR K+ ++ Q+  L        L    +Y +N +  A+E   
Sbjct: 60  VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRL--------LPDRNVY-EN-VAFALEVTG 107

Query: 336 LKATI--SRLPMLLD----SSVSDE-GENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           +       R+P  L+    S          S G++Q   + R ++    IL+ DE T ++
Sbjct: 108 VPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167

Query: 389 DSATDAILQRIIRE-EFPGSTVITVAH 414
           D  T   +  ++++    G+TV+   H
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 72.3 bits (177), Expect = 3e-13
 Identities = 76/314 (24%), Positives = 134/314 (42%), Gaps = 29/314 (9%)

Query: 147 VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMH-----LPPE 201
           VLL G   P     SLS    L S   ++      + N  VS++RI + +      L   
Sbjct: 546 VLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN 605

Query: 202 PPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGK 261
           PP    +   PA    +G     D K      +   L  I      G+ V +VG TG GK
Sbjct: 606 PPL---QPGAPAISIKNGYFSW-DSKT-----SKPTLSDINLEIPVGSLVAIVGGTGEGK 656

Query: 262 TTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG 320
           T+LISA+   L   E   ++I             R  ++ +PQ   +F  +VR N+    
Sbjct: 657 TSLISAMLGELSHAETSSVVI-------------RGSVAYVPQVSWIFNATVRENILFGS 703

Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380
            +     W A++   L+  +  LP    + + + G N S GQ+Q   + R +   + I +
Sbjct: 704 DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI 763

Query: 381 LDEATASIDS-ATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP 439
            D+  +++D+     +    +++E  G T + V +++  +   D  +++S G + E    
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTF 823

Query: 440 SKLMETNSAFSKLV 453
           ++L ++ S F KL+
Sbjct: 824 AELSKSGSLFKKLM 837

Length = 1495

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 63/219 (28%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +EL  +  R+       L G++ + + G    ++G  G+GK+TL+  L  L +P++G IL
Sbjct: 1   LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLK-AT 339
                                        G   +   P          +A    +   A 
Sbjct: 59  ---------------------------VDGKEVSFASP---------RDAR---RAGIAM 79

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA-TDAILQR 398
           + +L               SVG+RQ+  + R L +  R+L+LDE TA++  A  + + + 
Sbjct: 80  VYQL---------------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV 124

Query: 399 I--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV 434
           I  +R +  G  VI ++HR+  + + +D   VL  G +V
Sbjct: 125 IRRLRAQ--GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 21/213 (9%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---GLKD 293
           VL  ++ + +EG  VG++GR+G GK+TL   L  L +P  G +   G D+  +     + 
Sbjct: 26  VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85

Query: 294 LRTKLSIIPQE-PTLF--RGSVRTNL-DPLGMYSDNEIWEAMEKCQLKATISRL--PMLL 347
            R  + ++ Q+ P+    R +VR  + +PL   +       +++ + KA I+ L   + L
Sbjct: 86  FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS------LDESEQKARIAELLDMVGL 139

Query: 348 DSSVSDE-GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE---E 403
            S  +D+     S GQ Q   + R L  + +++VLDEA +++D    A++  ++R+    
Sbjct: 140 RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199

Query: 404 FPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
           F G+  + + H +  +        V+  G++VE
Sbjct: 200 F-GTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 24/184 (13%)

Query: 221 IELEDLKVRYRPNTP---LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I  + ++ RY+  TP     L  +  +   G+ V ++G TGSGK+TL+  L  L++P +G
Sbjct: 3   ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62

Query: 278 RILIDGLDICSMG-----LKDLRTKLSIIPQ--EPTLFRGSVRTNL--DPL--GMYSDNE 326
            + I G  + + G     LK LR K+ I+ Q  E  LF  +V  ++   P+  G+  +  
Sbjct: 63  TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE-- 119

Query: 327 IWEAMEKCQLKATISRLPM-LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
             +A +K +    +  LP  LL  S  +     S GQ +   +  VL     +LVLDE T
Sbjct: 120 --DAKQKAREMIELVGLPEELLARSPFE----LSGGQMRRVAIAGVLAMEPEVLVLDEPT 173

Query: 386 ASID 389
           A +D
Sbjct: 174 AGLD 177

Length = 290

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.3 bits (169), Expect = 4e-13
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 18/227 (7%)

Query: 225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG- 283
           DL  RY+     VLKG+   F      G+VG  G GK+TL   L  L+ P+ G +L  G 
Sbjct: 6   DLWFRYQDEP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63

Query: 284 -LDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISR 342
            LD    GL  LR +++ + Q+P   +    T++D    +S   +       ++   +  
Sbjct: 64  PLDYSKRGLLALRQQVATVFQDPE--QQIFYTDIDSDIAFSLRNLGVPEA--EITRRVDE 119

Query: 343 LPMLLDSSVSDEG--ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD----AIL 396
              L+D+        +  S GQ++   +   L+ + R L+LDE TA +D A      AI+
Sbjct: 120 ALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179

Query: 397 QRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
           +RI+ +   G+ VI  +H +  I + SD   VL  G+++ +  P ++
Sbjct: 180 RRIVAQ---GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223

Length = 271

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.9 bits (168), Expect = 4e-13
 Identities = 48/204 (23%), Positives = 97/204 (47%), Gaps = 16/204 (7%)

Query: 252 GVVGRTGSGKTTLISALFRL---VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF 308
            ++G +G GK+T +    R+   +   +G + I+G D+ +  +  LR  + ++ Q+P +F
Sbjct: 32  ALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91

Query: 309 RGSVRTNLDPL----GMYSDNEIWEAM-EKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363
             S+  N+       GM  + +  EA+   C  K  +      +   +       S GQ+
Sbjct: 92  VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE---VKDKLKQNALALSGGQQ 148

Query: 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT---IT 420
           Q  C+ R L  + ++L+LDE T+++D  +  +++ +++E     ++I V H +     + 
Sbjct: 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVA 208

Query: 421 DSDMFMVLSYGELVEYDLPSKLME 444
           D   F  L  GEL+E+    +  E
Sbjct: 209 DYTAFFHL--GELIEFGESKEFFE 230

Length = 246

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 27/239 (11%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-----VEPE 275
           +  +DL V Y       +KGI   F++     ++G +GSGK+T + +L R+     +   
Sbjct: 21  LSTKDLHVYYGKKE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARV 78

Query: 276 NGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWE 329
            G+IL  G+DI    + + ++R  + ++ Q P  F  S+  N    L+  G+     + E
Sbjct: 79  TGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE 138

Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGEN---WSVGQRQLFCLGRVLLKRNRILVLDEATA 386
            +E   LK        L D    D  ++    S GQ+Q  C+ R +  +  IL++DE  +
Sbjct: 139 IVET-SLKQA-----ALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPAS 192

Query: 387 SIDSATDAILQRIIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDLPSKL 442
           ++D  +   L+  + E     T+I V H   +    +D   F  L  G+L+EYD    +
Sbjct: 193 ALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYL--GDLIEYDKTRNI 249

Length = 267

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.2 bits (166), Expect = 6e-13
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 15/212 (7%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-----RILIDGLDICSMGL 291
           VLK I   F E     ++G +G GK+TL+ AL R+ +  +G      +L+D  +I S  L
Sbjct: 19  VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78

Query: 292 K--DLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNEIWEAMEKCQLKATISRLPM 345
              +LR ++ ++ Q+P  F  S+  N+      LG  + + + E +EK   +A    L  
Sbjct: 79  DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAA---LWD 135

Query: 346 LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP 405
            +  ++   G   S GQ+Q  C+ RVL     ++++DE  +++D  +   ++ +++E   
Sbjct: 136 EVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195

Query: 406 GSTVITVAHRVPTIT-DSDMFMVLSYGELVEY 436
             T+  V H +      SD    L  G+LVEY
Sbjct: 196 NYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227

Length = 251

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.1 bits (166), Expect = 6e-13
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 26/242 (10%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--PE--- 275
           I   D+ + Y       LKGI   F +     ++G +G GK+T +  L R+ +  P    
Sbjct: 6   ITSSDVHLFYGKFE--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63

Query: 276 NGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWE 329
            G + + G +I +    +  LR ++ ++ Q+P  F  S+  N    L   G+     + E
Sbjct: 64  TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDE 123

Query: 330 AMEKCQLKATI--SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
           A+E    +A I       L +S++S  G     GQ+Q  C+ RVL  +  +++LDE T++
Sbjct: 124 AVETSLKQAAIWDEVKDHLHESALSLSG-----GQQQRVCIARVLAVKPDVILLDEPTSA 178

Query: 388 IDSATDAILQRIIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDLPSKLME 444
           +D  +   ++ ++ E     T+I V H   +   I+D   F +   G L+E+   +K M 
Sbjct: 179 LDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFL--TGNLIEFA-DTKQMF 235

Query: 445 TN 446
            N
Sbjct: 236 LN 237

Length = 252

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 31/199 (15%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I  E+L          +L G++   + G  + ++G  G+GK+TL+ AL   + P++G + 
Sbjct: 2   IRAENLSYSLAGRR--LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQE-----PTLFRGSVRTNLDPLGMYSDNE-----IWEA 330
           ++G+ + S   ++L    +++PQ      P   +  V+    P     + E       +A
Sbjct: 60  LNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119

Query: 331 MEKCQLKATISRL-PMLLDSSVSDEGENWSVGQRQLFCLGRVLLK------RNRILVLDE 383
           +    L     R    L            S G++Q   L RVL +        R L LDE
Sbjct: 120 LAATDLSGLAGRDYRTL------------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDE 167

Query: 384 ATASIDSATDAILQRIIRE 402
            T+++D A      R+ R+
Sbjct: 168 PTSALDIAHQHHTLRLARQ 186

Length = 259

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 68.3 bits (167), Expect = 7e-13
 Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 30/225 (13%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           +L  ++ TF  G   G++G  GSGK+TL+  L R   P  G IL+D   + S   K    
Sbjct: 26  LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85

Query: 297 KLSIIPQEPTLFRGSVRTNLDPLGMY-----------SDNE-IWEAMEKCQLKATISRLP 344
           K++ +PQ+     G     L  +G Y           +D E + EA+    LK    R  
Sbjct: 86  KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-- 143

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD----AILQRII 400
            L+DS         S G+RQ   +  ++ + +R L+LDE T+++D A      A++ R+ 
Sbjct: 144 -LVDS--------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS 194

Query: 401 REEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           +E   G TVI V H +       D  + L  GE++    P++LM 
Sbjct: 195 QER--GLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237

Length = 265

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 67.2 bits (165), Expect = 7e-13
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 19/185 (10%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           ++  DL   Y      VL  I+   K+G   G +G  G+GKTT +  +  L++P++G I 
Sbjct: 1   LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MYSDNEIWEAMEKCQL 336
            DG         +   ++  + + P  +   + R NL  L          I E ++   L
Sbjct: 59  FDGKSY--QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL 116

Query: 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
           K +  +        V      +S+G +Q   +   LL    +L+LDE T  +D      L
Sbjct: 117 KDSAKKK-------VK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165

Query: 397 QRIIR 401
           + +I 
Sbjct: 166 RELIL 170

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 31/244 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE----- 275
           IE  +L+V Y  N   V+KG+     +     ++G +G GK+TL+    RL+E       
Sbjct: 5   IETVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62

Query: 276 NGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLF-------RGSVRTNLDPLGMYSDNE 326
            G + + G +I S  +   ++R ++ ++ Q P  F         ++   L+ L + S  E
Sbjct: 63  EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKE 121

Query: 327 IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386
           + E +E    KA    L   +   ++D   N S GQRQ   + R L  + +IL++DE TA
Sbjct: 122 LDERVEWALKKAA---LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178

Query: 387 SIDSATDAILQRIIREEFPGSTVITVAH------RVPTITDSDMFMVLSYGELVEYDLPS 440
           +ID    A ++ ++ E     T++ V H      RV     SD    L  G+L+E     
Sbjct: 179 NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARV-----SDYVAFLYLGKLIEVGPTR 233

Query: 441 KLME 444
           K+ E
Sbjct: 234 KVFE 237

Length = 253

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 66.0 bits (162), Expect = 7e-13
 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 48/195 (24%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IELE+L +   P+  ++LK ++   K G R+ + G +G+GK++L  AL  L    +GRI 
Sbjct: 1   IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
           +                L  +PQ P L  G++R  L    +Y     W            
Sbjct: 60  MPE-----------GEDLLFLPQRPYLPLGTLREQL----IYP----W------------ 88

Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400
                          +  S G++Q     R+LL + + + LDEAT+++D  ++  L +++
Sbjct: 89  --------------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134

Query: 401 REEFPGSTVITVAHR 415
           +E   G TVI+V HR
Sbjct: 135 KEL--GITVISVGHR 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 68.3 bits (167), Expect = 9e-13
 Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 9/230 (3%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTT---LISALFRLVEPENG 277
           +E + +   Y  +    L  I+ +   G+   ++G  GSGK+T   LI+ L    +  N 
Sbjct: 6   VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65

Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEP-TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQL 336
           +I +DG+ + +  + D+R K+ I+ Q P   F G+   +    G+ +       M K  +
Sbjct: 66  KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-V 124

Query: 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
           +  ++ + ML    +  E  N S GQ+Q   +  +L    +I++LDE+T+ +D A    +
Sbjct: 125 RDVLADVGML--DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182

Query: 397 QRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME 444
            ++IR+  +    TVI++ H +     +D  +VL  G+L+    P ++  
Sbjct: 183 LKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232

Length = 282

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 62/249 (24%), Positives = 120/249 (48%), Gaps = 33/249 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +++E+L   ++      LK ++   + G    ++G TGSGK+ L+  +   ++P++G+IL
Sbjct: 1   LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYS--------DNEIWEAM 331
           ++G DI    L   +  +S +PQ   LF   +V  N+   G+          + ++ E  
Sbjct: 58  LNGKDI--TNLPPEKRDISYVPQNYALFPHMTVYKNIA-YGLKKRKVDKKEIERKVLEIA 114

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           E   +   ++R P  L           S G++Q   + R L+   +IL+LDE  +++D  
Sbjct: 115 EMLGIDHLLNRKPETL-----------SGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163

Query: 392 TDAILQ---RIIREEFPGSTVITVAHRVPTI-TDSDMFMVLSYGELVEYDLPSKLMETNS 447
           T   L+   + IR+EF G TV+ V H        +D   ++  G+L++   P ++ +   
Sbjct: 164 TKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPK 222

Query: 448 AFSKLVAEY 456
             ++ VAE+
Sbjct: 223 --NEFVAEF 229

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 68.2 bits (167), Expect = 9e-13
 Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 31/232 (13%)

Query: 221 IELEDLKVRYRPNT----PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN 276
           I+ +++  +Y  N      L L  +    K+G  + ++GR GSGK+T+   +  L+ P  
Sbjct: 5   IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64

Query: 277 GRILIDGLDICSMG-LKDLRTKLSIIPQEP------TLFRGSVRTNLDPLGMYSDNEIWE 329
           G++ +DGLD      L D+R K  ++ Q P      T+    V    + LG+  + EI E
Sbjct: 65  GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPE-EIRE 123

Query: 330 AMEKCQLKATISRL----PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
            +++   K  +       P LL           S GQ+Q   +  +L  R   ++ DE T
Sbjct: 124 RVDESLKKVGMYEYRRHAPHLL-----------SGGQKQRVAIAGILAMRPECIIFDEPT 172

Query: 386 ASID-SATDAILQRI--IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELV 434
           A +D S    ++  I  + +++ G T+I + H +    ++D  +V+  G++V
Sbjct: 173 AMLDPSGRREVVNTIKELNKKY-GITIILITHYMEEAVEADRIIVMDSGKVV 223

Length = 280

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 73/248 (29%), Positives = 116/248 (46%), Gaps = 34/248 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPE--- 275
           +++ DL V Y  N    L  ++  F       ++G +GSGK+TL+ ++ R+  + PE   
Sbjct: 6   LQVSDLSVYY--NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63

Query: 276 NGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWE 329
            G I+ +G +I S      DLR ++ ++ Q+P  F  S+  N    L   G+     + E
Sbjct: 64  TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE 123

Query: 330 AMEKCQLKATI--SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
           A+EK    A+I       L DS++   G     GQ+Q  C+ RVL    +I++LDE T  
Sbjct: 124 AVEKSLKGASIWDEVKDRLHDSALGLSG-----GQQQRVCIARVLATSPKIILLDEPT-- 176

Query: 388 IDSATDAILQRIIREEFPG----STVITVAH---RVPTITDSDMFMVLSYGELVEYDLPS 440
             SA D I    I E   G     T++ V     +   I+D   F +   G+L+EY+  +
Sbjct: 177 --SALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFL--DGDLIEYN-DT 231

Query: 441 KLMETNSA 448
           K M  N  
Sbjct: 232 KQMFMNPK 239

Length = 252

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 20/214 (9%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPE---NGRILIDGLDICSMGLK 292
           +K +    + GT   ++G +G GKTT + A+ R+  + P     GRIL+DG DI    + 
Sbjct: 20  VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79

Query: 293 D--LRTKLSIIPQEPTLFR-----GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPM 345
              +R ++ ++ Q+P  F       +V   L   G+   + + E  E+    A    L  
Sbjct: 80  PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA---LWD 136

Query: 346 LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP 405
            +   +       S GQ+Q  C+ R L     IL++DE T+++D A+ A ++ ++ +   
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196

Query: 406 GSTVITVA---HRVPTITDSDMFMVLSYGELVEY 436
            +T+I V    H+   ++D+  F ++  G+LVE+
Sbjct: 197 VTTIIIVTHNMHQAARVSDTTSFFLV--GDLVEH 228

Length = 252

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 24/224 (10%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+  L  RY       L  ++ T + G  V ++G  G+GK+TL S L RL   + G+I 
Sbjct: 2   LEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTL-FRGSVRTNL----DPLGMYSDN---EIWEAME 332
           + G D+       L  +L ++ Q+PTL    SVR NL       G+        I E + 
Sbjct: 60  VAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLA 118

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
           +  L           D  V +     + G R+   + R LL R  +L+LDE T  +D A+
Sbjct: 119 RLGLAER-------ADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167

Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELV 434
            A +   +R      G +V+   H V  I   D  +VL  G ++
Sbjct: 168 RAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVL 211

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 29/233 (12%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
           E+  L  R+   T   +  ++   + G  VG++G  G+GKTTL + +    +P +G ++ 
Sbjct: 6   EVRGLSKRFGGLT--AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIF 63

Query: 282 DGLDICSMGLKD-LRTKLSIIP--QEPTLFRG-----SVRTNLDPLGMYSD--------N 325
            G DI   GL      +L I    Q   LF G     +V          S          
Sbjct: 64  RGRDI--TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121

Query: 326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
           E  EA E+   +  +  +   L         N S GQ++   + R L  + ++L+LDE  
Sbjct: 122 EEREARER--ARELLEFVG--LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177

Query: 386 ASI-DSATDAILQRI--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV 434
           A +    T+ + + I  +R+   G T++ + H +  +   +D  +VL+YGE++
Sbjct: 178 AGLNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYGEVI 229

Length = 250

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 30/240 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I +E+  V     T +VL  ++    +G    ++G  G+GK+TL+S + RL++ ++G I 
Sbjct: 2   ITIEN--VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTL-FRGSVRTNLDPLGMY---------SDNE-IWE 329
           IDGL++ S   K+L  KLSI+ QE  +  R +VR +L   G +          D   I E
Sbjct: 60  IDGLELTSTPSKELAKKLSILKQENHINSRLTVR-DLVGFGRFPYSQGRLTKEDRRIINE 118

Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
           A+E   L+    R    LD          S GQRQ   +  VL +    ++LDE   ++D
Sbjct: 119 AIEYLHLEDLSDR---YLDE--------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167

Query: 390 SATDAILQRIIR---EEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET 445
                 + +I+R   +E  G T++ V H +   +  SD  + L  G++V+   P ++++ 
Sbjct: 168 MKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226

Length = 252

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 68.8 bits (168), Expect = 3e-12
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 27/238 (11%)

Query: 234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD 293
           TP VLK I+   ++G  + V G TGSGK++L+  +   +EP  G+I   G          
Sbjct: 439 TP-VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------- 487

Query: 294 LRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD 353
              ++S  PQ   +  G+++ N+     Y +      ++ CQL+  I+  P    + + +
Sbjct: 488 ---RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544

Query: 354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA-ILQRIIREEFPGSTVITV 412
            G   S GQR    L R + K   + +LD     +D  T+  I +  + +     T I V
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604

Query: 413 AHRVPTITDSDMFMVLS------YGELVEY-----DLPSKLMETNSAFSKLVAEYRSS 459
             ++  +  +D  ++L       YG   E      D  S L+    AF    AE R+S
Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLE-AFDNFSAERRNS 661

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 63/238 (26%), Positives = 118/238 (49%), Gaps = 27/238 (11%)

Query: 221 IELEDL-KVRYRPNTPL-VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           I+L ++ KV ++    +  L  ++     G   GV+G +G+GK+TLI  +  L  P +G 
Sbjct: 2   IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61

Query: 279 ILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLD----PLGMYSDNEIWEAM 331
           +++DG D+ ++   +L   R ++ +I Q   L   S RT       PL +       +  
Sbjct: 62  VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL--SSRTVFGNVALPLEL-------DNT 112

Query: 332 EKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
            K ++K  ++ L  L+   + D+ +    N S GQ+Q   + R L    ++L+ DEAT++
Sbjct: 113 PKDEIKRKVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 388 IDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
           +D AT   +  +++E     G T++ + H +  +    D   V+S GEL+E    S++
Sbjct: 171 LDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 33/239 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E  DLK  Y P+    LKGI    ++G  V ++G  G+GK+TL      +++P +G +L
Sbjct: 2   LETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60

Query: 281 IDG--LDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNL--DPLGMYSDNEIWEAMEKC 334
           I G  +      L ++R  + I+ Q P   LF  +V  ++   PL +    E  E   K 
Sbjct: 61  IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKE 120

Query: 335 QLKATISRLPMLLDSSVSDEG------ENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
            LKA            V  EG       + S GQ++   +  +L  +  I+VLDE T+ +
Sbjct: 121 ALKA------------VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168

Query: 389 D----SATDAILQRIIREEFPGSTVITVAHRVPTI-TDSDMFMVLSYGELVEYDLPSKL 442
           D    S    +L  + +E   G T+I   H V  +   +D   V+S G++++   P ++
Sbjct: 169 DPMGASQIMKLLYDLNKE---GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224

Length = 275

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 5/226 (2%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
            L   +V +     L++ G+  T   G+  G++G  GSGK+TL+  L   + P+ G + +
Sbjct: 1   GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60

Query: 282 DGLDICSMGLKDLRTKLSIIPQE-PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
            G+D+  +  +    +++++ Q+  T    +VR ++  LG      +W            
Sbjct: 61  AGVDLHGLSRRARARRVALVEQDSDTAVPLTVR-DVVALGRIPHRSLWAGDSPHDAAVVD 119

Query: 341 SRLPMLLDSSVSDEG-ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
             L     S ++D      S G+RQ   + R L +  ++L+LDE T  +D         +
Sbjct: 120 RALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179

Query: 400 IRE-EFPGSTVITVAHRVP-TITDSDMFMVLSYGELVEYDLPSKLM 443
           +RE    G TV+   H +    +  D  +VL  G +V    P +++
Sbjct: 180 VRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 43/223 (19%)

Query: 227 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 286
            V Y      +L  I+ + + G    + G +G GK+TL+  +  L+ P +G +L +G DI
Sbjct: 12  NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI 71

Query: 287 CSMGLKDLRTKLSIIPQEPTLFRGSVRTNL-----------DPLGMYSDNEIWEAMEKCQ 335
            ++  +  R ++S   Q PTLF  +V  NL           DP     D      +E+  
Sbjct: 72  STLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDD------LERFA 125

Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN-----RILVLDEATASIDS 390
           L  TI      L  ++++     S G++Q     R+ L RN     ++L+LDE T+++D 
Sbjct: 126 LPDTI------LTKNIAE----LSGGEKQ-----RISLIRNLQFMPKVLLLDEITSALDE 170

Query: 391 AT----DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS 429
           +     + I+ R +RE+     V+ V H    I  +D  + L 
Sbjct: 171 SNKHNVNEIIHRYVREQ--NIAVLWVTHDKDEINHADKVITLQ 211

Length = 225

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 66.4 bits (162), Expect = 4e-12
 Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 24/234 (10%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE  DL   Y  +    L  I       +R+ V+G  G+GK+TL      +++P +G +L
Sbjct: 4   IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNL--DPLGMYSDNE-----IWEAM 331
           I G  I    ++++R  + ++ Q P   +F  +V  ++   P+ +  D E     +  A+
Sbjct: 63  IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
               L+    R+P  L           S G+++   +  V+    ++LVLDE TA +D  
Sbjct: 123 HMLGLEELRDRVPHHL-----------SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171

Query: 392 TDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
               L   + +  E  G TVI   H++  + + +D   V+  G +V Y    ++
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225

Length = 277

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 67.6 bits (166), Expect = 5e-12
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 28/232 (12%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDL 294
           L  ++   + G  V + G  G+GK+TL+  L   V P     G I+ +G ++ +  ++D 
Sbjct: 21  LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDT 79

Query: 295 RTK-LSIIPQEPTLFRG-SVRTNLDPLGMYSDNEI-------WEAM-EKCQ-LKATISRL 343
               ++II QE  L +  SV  N     ++  NEI       ++AM  + Q L A +   
Sbjct: 80  ERAGIAIIHQELALVKELSVLEN-----IFLGNEITPGGIMDYDAMYLRAQKLLAQLK-- 132

Query: 344 PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE- 402
              LD + +    N  +GQ+QL  + + L K+ R+L+LDE TAS+  +  A+L  IIR+ 
Sbjct: 133 ---LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189

Query: 403 EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453
           +  G   I ++H++  +   SD   V+  G  +    P+  M  +   + +V
Sbjct: 190 KAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTR-PAAGMTEDDIITMMV 240

Length = 506

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 43/208 (20%)

Query: 210 KPPASWPSHGRIELEDLKVRY--------RPNTPLV-LKGITCTFKEGTRVGVVGRTGSG 260
            PP    +   +E+EDL+V +        R    L  + GI+ T + G  +G+VG +GSG
Sbjct: 266 PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSG 325

Query: 261 KTTLISALFRLVEPENGRILIDGLDICSM---GLKDLRTKLSIIPQEPTLFRGSV--RTN 315
           K+TL  AL RL+  + G I  DG DI  +    ++ LR ++ ++ Q+P    GS+  R  
Sbjct: 326 KSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY---GSLSPRMT 381

Query: 316 L-----DPLGMYS--------DNEIWEAMEKCQL-KATISRLPMLLDSSVSDEGENWSVG 361
           +     + L ++         D  + EA+E+  L  AT +R P             +S G
Sbjct: 382 VGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP-----------HEFSGG 430

Query: 362 QRQLFCLGRVLLKRNRILVLDEATASID 389
           QRQ   + R L+ +  +++LDE T+++D
Sbjct: 431 QRQRIAIARALILKPELILLDEPTSALD 458

Length = 534

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 26/235 (11%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           VLK I    ++G  + + G TGSGKT+L+  +   +EP  G+I   G             
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98

Query: 297 KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 356
           ++S   Q   +  G+++ N+     Y +      ++ CQL+  I++ P   ++ + + G 
Sbjct: 99  RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158

Query: 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA-ILQRIIREEFPGSTVITVAHR 415
             S GQR    L R + K   + +LD     +D  T+  I +  + +     T I V  +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSK 218

Query: 416 VPTITDSDMFMVLSYGELVEY-----------DLPSKLMETNSAFSKLVAEYRSS 459
           +  +  +D  ++L  G    Y           D  SKLM  ++ F +  AE R+S
Sbjct: 219 MEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDT-FDQFSAERRNS 272

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 40/255 (15%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----P 274
           ++ +EDL V Y  +    LKG++    E +   ++G +G GK+T +  L R+ +      
Sbjct: 45  KLSVEDLDVYYGDDH--ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAAR 102

Query: 275 ENGRILIDGLDICSMG--LKDLRTKLSIIPQEPTLFRGSVRTNLD--P------------ 318
            +G + +DG DI   G  L +LR ++ ++ Q P  F  S+R N+   P            
Sbjct: 103 IDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLA 162

Query: 319 --LGMYSDNEIWEAMEKCQLKATI-----SRLPMLLDSSVSDEGENWSVGQRQLFCLGRV 371
             LG    +   E +E+   +A +      RL         D     S GQ+Q  C+ R 
Sbjct: 163 RLLGRDDKDAEDELVERSLRQAALWDEVNDRL--------DDNALGLSGGQQQRLCIARC 214

Query: 372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMV-LS 429
           L     ++++DE  +++D    + ++ +I E     TV+ V H +      SD   V L+
Sbjct: 215 LAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274

Query: 430 YGELVEYDLPSKLME 444
            GELVEYD   K+ E
Sbjct: 275 GGELVEYDDTDKIFE 289

Length = 305

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 53/243 (21%), Positives = 85/243 (34%), Gaps = 38/243 (15%)

Query: 198 LPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRT 257
            P EP                  IEL+++ VR   N   +L  ++     G    +VG  
Sbjct: 15  EPKEPKKRHPIEINEP------LIELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPN 66

Query: 258 GSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTK-------LSIIPQEPTLFR 309
           G+GKTTL+S L     P +G + + G          +LR +       L    +     R
Sbjct: 67  GAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVR 126

Query: 310 GSVRTNL-DPLGMY---SDNEIWEAM----EKCQLKATISRLPMLLDSSVSDEGENWSVG 361
             V +     +G+Y      E   A     E    K    R    L           S G
Sbjct: 127 DVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSL-----------SQG 175

Query: 362 QRQLFCLGRVLLKRNRILVLDEATASID-SATDAILQRI--IREEFPGSTVITVAHRVPT 418
           +++   + R L+K   +L+LDE    +D  A + +L R+  +        ++ V H    
Sbjct: 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE 235

Query: 419 ITD 421
           I  
Sbjct: 236 IPP 238

Length = 257

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 18/213 (8%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297
           + G+    +EG   G +G  G+GKTT I  L  L+ P +G   + G D+     K +R  
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-VRRS 67

Query: 298 LSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEG 355
           + I+PQ  ++    + R NL+ +G        EA E         R   LL+   + +  
Sbjct: 68  IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEE---------RAEELLELFELGEAA 118

Query: 356 ----ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVI 410
                 +S G R+   +   L+ +  +L LDE T  +D  T   +   IR     G T++
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178

Query: 411 TVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
              H +       D   ++ +G ++    P +L
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 26/205 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+E+L  +Y       ++G++   + G   G++G  G+GKTT I  L  L++P +GR  
Sbjct: 1   IEVENLVKKY--GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG-MYS------DNEIWEAME 332
           + G D+     +++R ++ I+ Q+ ++    +   NL     +Y          I E ++
Sbjct: 59  VAGHDVVREP-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLD 117

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
              L     RL            + +S G R+   + R L+ R  +L LDE T  +D  T
Sbjct: 118 FVGLLEAADRLV-----------KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166

Query: 393 DAILQRIIR---EEFPGSTVITVAH 414
            A +   I    EEF G T++   H
Sbjct: 167 RAHVWEYIEKLKEEF-GMTILLTTH 190

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 34/230 (14%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +ELE++  R+   T   L  +     +G  V ++G +G GKTT +  +  L EP +GRI 
Sbjct: 1   VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGMYS------DNEIWEAME 332
           I G D+  +  KD    ++++ Q   L+   +V  N+   L +        D  + E  E
Sbjct: 59  IGGRDVTDLPPKD--RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE 116

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
             Q++  + R P  L           S GQRQ   LGR +++  ++ ++DE      S  
Sbjct: 117 LLQIEHLLDRKPKQL-----------SGGQRQRVALGRAIVREPKVFLMDEPL----SNL 161

Query: 393 DAILQRIIREEFP------GSTVITVAH-RVPTITDSDMFMVLSYGELVE 435
           DA L+  +R E        G+T I V H +V  +T +D   V++ G++ +
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 64.1 bits (157), Expect = 9e-12
 Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 41/215 (19%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-----LDICSMGL 291
            LK ++     G R+G++GR G+GK+TL+  L  +  P++G + + G     L +   G 
Sbjct: 37  ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL-GGGF 95

Query: 292 KDLRTKLSIIPQEPTL-------FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP 344
                        P L         G +      LG+ S  EI E +++       S L 
Sbjct: 96  ------------NPELTGRENIYLNGRL------LGL-SRKEIDEKIDEI---IEFSELG 133

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF 404
             +D  V      +S G +              IL++DE  A  D+A     QR +RE  
Sbjct: 134 DFIDLPVK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189

Query: 405 -PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437
             G TVI V+H   +I    D  +VL  G++    
Sbjct: 190 KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 64.8 bits (158), Expect = 9e-12
 Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 31/243 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PE 275
           +  ++L + Y       L  IT +  +     ++G +G GK+TL+    R+ +       
Sbjct: 7   LSTKNLNLWY--GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRI 64

Query: 276 NGRILIDGLDICSMGLK--DLRTKLSIIPQEPTLFRGSVRTNL--DPL--GMYSDNEIWE 329
            G IL +G +I   G     LR K+ ++ Q P  F  S+  N+   P   G  +   +  
Sbjct: 65  TGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDT 124

Query: 330 AMEKCQLKATI-----SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384
            +EK    A +      RL    DS++S  G     GQ+Q  C+ R L     ++++DE 
Sbjct: 125 IVEKSLKGAALWDEVKDRLH---DSALSLSG-----GQQQRLCIARTLAVNPEVILMDEP 176

Query: 385 TASIDSATDAILQRIIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDLPSK 441
            +++D    A ++ +I +     TVI V H   +   ++D   FM L  G+L+E+D  ++
Sbjct: 177 CSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQ 234

Query: 442 LME 444
           + E
Sbjct: 235 IFE 237

Length = 253

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.1 bits (158), Expect = 1e-11
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 30/243 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKG---ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I+ E +   Y+PN+P   +    I    K+G+   ++G TGSGK+TL+  L  L++P  G
Sbjct: 2   IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61

Query: 278 RILIDGLDICSMG----LKDLRTKLSIIPQEP--TLFRGSVRTNL----DPLGMYSDNEI 327
           ++ +  + + S      +K +R K+ ++ Q P   LF  +V  ++       G+  +   
Sbjct: 62  KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121

Query: 328 WEAMEKCQL----KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
             A EK ++         + P  L           S GQ +   +  +L     +LVLDE
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFEL-----------SGGQMRRVAIAGILAMEPEVLVLDE 170

Query: 384 ATASIDSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441
            TA +D      + ++       G TV+ V H +  + D +D   +L  G ++    PS 
Sbjct: 171 PTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230

Query: 442 LME 444
           + +
Sbjct: 231 VFQ 233

Length = 288

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 21/237 (8%)

Query: 221 IELEDLKVRYRPNTPL---VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I  +++   Y+  TP     +  +   F++G    +VG+TGSGK+TLI  +  L++P  G
Sbjct: 3   IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62

Query: 278 RILIDGLDICSMG----LKDLRTKLSIIPQ--EPTLFRGSVRTNLDPLGMYSDNEIWEAM 331
            + +D + I        ++ +R ++ ++ Q  E  LF  +V   +   G  +       M
Sbjct: 63  TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREII-FGPKNFK-----M 116

Query: 332 EKCQLKATISRLPMLLDSS---VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
              ++K    RL M L  S   +S      S GQ +   +  +L     I+VLDE TA +
Sbjct: 117 NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176

Query: 389 DSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
           D  +   + R+++        T+I V+H +  +   +D  +V+  G +V    P +L
Sbjct: 177 DPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233

Length = 286

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 72/258 (27%), Positives = 118/258 (45%), Gaps = 43/258 (16%)

Query: 216 PSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-- 273
            +  +I++ +L   Y       LK I     +      +G +G GK+TL+    R+ E  
Sbjct: 9   TAPSKIQVRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY 66

Query: 274 PE---NGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-----YS 323
           PE    G IL+DG +I +    +  LR K+ ++ Q+PT F  S+  N+   G+      S
Sbjct: 67  PEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI-AFGVRLFEKLS 125

Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDE----GENWSVGQRQLFCLGRVLLKRNRIL 379
             E+ E +E    KA        L + V D+    G + S GQ+Q  C+ R +  R  +L
Sbjct: 126 RAEMDERVEWALTKAA-------LWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVL 178

Query: 380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAH------RVPTITDSDMFMVLSYGEL 433
           +LDE  +++D  +   ++ +I E     TV+ V H      R    +D   FM L  GEL
Sbjct: 179 LLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC---SDYTAFMYL--GEL 233

Query: 434 VEYDLPSKLMETNSAFSK 451
           +E+        T++ F+K
Sbjct: 234 IEFG------NTDTIFTK 245

Length = 260

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 16/215 (7%)

Query: 254 VGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLKDLRTKLSIIPQEPT 306
           +G +G GK+T +    R+ +        G + IDG+D+ S    +  LR K+ ++ Q+P 
Sbjct: 37  IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96

Query: 307 LFRGSVRTNL--DPL--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362
            F  S+  N+   P   G+  + +  + + +  L  T   L   L   + D     S GQ
Sbjct: 97  PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSL--TSVGLWEELGDRLKDSAFELSGGQ 154

Query: 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD- 421
           +Q  C+ R +  +  +L++DE  +++D     +++ +I+E     T+I V H +      
Sbjct: 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKV 214

Query: 422 SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
           SD       G +VEY+   ++ +  +  S     Y
Sbjct: 215 SDRVAFFQSGRIVEYNTTQEIFK--NPQSSKTKRY 247

Length = 251

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIP 302
           +G    ++G +GSGK+T +  L RL+EP  G+I IDG +I      +L    R K+ ++ 
Sbjct: 18  KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77

Query: 303 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362
           Q+  LF     T L    +  +   W   E+ + KA      + L+       +  S G 
Sbjct: 78  QQFALF--PHMTILQNTSLGPELLGWPEQER-KEKALELLKLVGLEEYEHRYPDELSGGM 134

Query: 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP------GSTVITVAHRV 416
           +Q   L R L     IL++DEA     SA D +++  +++E          T++ + H +
Sbjct: 135 QQRVGLARALAAEPDILLMDEAF----SALDPLIRDSMQDELKKLQATLQKTIVFITHDL 190

Query: 417 -PTITDSDMFMVLSYGELVEYDLPSKLM 443
              I   D  +++  GE+V+   P +++
Sbjct: 191 DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 24/200 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E ++L  R+   T   +  I+ T  + +  G++G  G+GK+TL+  +  ++ P +G I+
Sbjct: 1   LETKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP----LGMYSDNEIWEAMEKCQL 336
            DG        KDL    S+I   P     + R NL      LG+  D+ I E +    L
Sbjct: 59  FDGHP---WTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL-PDSRIDEVLNIVDL 114

Query: 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
             T  +               +S+G +Q   +   LL   ++L+LDE T  +D      L
Sbjct: 115 TNTGKK-------KAKQ----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL 163

Query: 397 QRIIREEFP--GSTVITVAH 414
           + +IR  FP  G TVI  +H
Sbjct: 164 RELIR-SFPEQGITVILSSH 182

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.5 bits (154), Expect = 2e-11
 Identities = 56/240 (23%), Positives = 113/240 (47%), Gaps = 20/240 (8%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPE-- 275
           +++LE L V +  N    +K ++  F E +   ++G +G GK+T++ ++ R+  + P   
Sbjct: 4   KVKLEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61

Query: 276 -NGRILIDGLDICSMGLK--DLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAM 331
             G+IL+D  DI   G+    +R ++ ++ Q+P  F   S+  N+  +  Y  N      
Sbjct: 62  VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRS 119

Query: 332 EKCQLKATISRLPMLLDS---SVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           E  ++  +  +   L D     +       S GQ+Q  C+ R +  +  ++++DE  +++
Sbjct: 120 EADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASAL 179

Query: 389 DSATDAILQRIIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDLPSKLMET 445
           D  +   ++ +I E     T+I V H   +   ++D   F  +  G+LVE     K+  T
Sbjct: 180 DPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM--GDLVECGETKKIFTT 237

Length = 252

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 21/230 (9%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----P 274
           RIE+E+L   +      +LK +     + +   ++G +G GK+T I  L R+ +      
Sbjct: 3   RIEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60

Query: 275 ENGRILIDGLDIC--SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YSDNEIW 328
             G I +DG+DI   ++ + +LR K+ ++ Q+P  F  S+  N+   G+      D +  
Sbjct: 61  HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNV-AYGLRIHGEDDEDFI 119

Query: 329 EAMEKCQLKATI--SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386
           E   +  LKA      +   LD S        S GQ+Q  C+ R +     ++++DE  +
Sbjct: 120 EERVEESLKAAALWDEVKDKLDKSAL----GLSGGQQQRLCIARTIAVSPEVILMDEPCS 175

Query: 387 SIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
           ++D  +   ++ +I +     T++ V H +   T  S        GE++E
Sbjct: 176 ALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225

Length = 250

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 40/251 (15%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR---LVE--P 274
           +  +E+L + Y  N    LK I           ++G +G GK+TL+  L R   L+E   
Sbjct: 3   KFNIENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60

Query: 275 ENGRILIDGLDI-CSMGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWE 329
             G++ +DG DI  ++ + DLR K+ ++ Q+P  F  S+  N    L   G+     + E
Sbjct: 61  ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDE 120

Query: 330 AMEKCQLKATISRLPMLLDSSVSDE----GENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
            +E+    A        L   V D         S GQ+Q  C+ R +     ++++DE T
Sbjct: 121 VVERSLRGAA-------LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173

Query: 386 ASIDS-ATDAI--LQRIIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDLP 439
           +++D  AT  I  L   +++ +   T++ V H   +   I+D   F ++  GELVE+D  
Sbjct: 174 SALDPIATHKIEELMEELKKNY---TIVIVTHSMQQARRISDRTAFFLM--GELVEHD-- 226

Query: 440 SKLMETNSAFS 450
               +T   FS
Sbjct: 227 ----DTQVIFS 233

Length = 249

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 34/267 (12%)

Query: 196 MHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVG 255
           ++LPPE   +    KP     +   I   + +   + N  ++ K +T          ++G
Sbjct: 23  IYLPPERKKVSGGGKPHVVAKNFS-IYYGEFEAVKKVNADILSKYVT---------AIIG 72

Query: 256 RTGSGKTTLISALFRLVE--PE---NGRILIDGLDICSMGLKD--LRTKLSIIPQEPTLF 308
            +G GK+T + A+ R+ +  P     G ++ DG DI      +  LR K+ ++ Q+P  F
Sbjct: 73  PSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPF 132

Query: 309 RGSVRTNL--DPL--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN----WSV 360
             S+  N+   P   G+    ++ E +EK   KA        L   VSD  +      S 
Sbjct: 133 PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA-------LWDEVSDRLDKNALGLSG 185

Query: 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT 420
           GQ+Q  C+ R L     IL+LDE T+++D    A ++ +I+E     T++ V H +   +
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQAS 245

Query: 421 D-SDMFMVLSYGELVEYDLPSKLMETN 446
             SD  M    G LVE+  P+  + TN
Sbjct: 246 RVSDYTMFFYEGVLVEH-APTAQLFTN 271

Length = 286

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 61.6 bits (149), Expect = 7e-11
 Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 7/201 (3%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297
           L  I      G    +VG+ G GK++L+ A+   ++   G++     +      +  R++
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76

Query: 298 ----LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD 353
               ++   Q+P L   +V  N+     ++        + C L+  I  LP    + + +
Sbjct: 77  NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136

Query: 354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID-SATDAILQRIIRE--EFPGSTVI 410
            G N S GQRQ  C+ R L +   I+ LD+  +++D   +D ++Q  I +  +    T++
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLV 196

Query: 411 TVAHRVPTITDSDMFMVLSYG 431
            V H++  +  +D  + +  G
Sbjct: 197 LVTHKLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 31/211 (14%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E  +L VR    T  +L  ++ T + G  V ++G  G+GK+TL+ AL   + P++G + 
Sbjct: 3   LEARNLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTL---FRGS--VRTNLDPLGMYS---DNEIWEAME 332
           ++G  +      +L  + +++PQ  +L   F     V     P G+     D  +  A+ 
Sbjct: 61  LNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALA 120

Query: 333 KCQLKATISRL-PMLLDSSVSDEGENWSVGQRQLFCLGRVLL------KRNRILVLDEAT 385
           +  L     R  P L            S G++Q   L RVL          R L+LDE T
Sbjct: 121 QVDLAHLAGRDYPQL------------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168

Query: 386 ASIDSATDAILQRIIRE--EFPGSTVITVAH 414
           +++D A    + R+ R+     G  VI V H
Sbjct: 169 SALDLAHQHHVLRLARQLAHERGLAVIVVLH 199

Length = 258

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 29/204 (14%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            +E EDL    R    ++  G++ T   G  + + G  GSGKTTL+  +  L+ P  G I
Sbjct: 2   MLEGEDLACV-R-GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI 59

Query: 280 LIDGLDICSMGLKDLRTKLSII----PQEPTLFRGSVRTNL----DPLGMYSDNEIWEAM 331
            +DG DI      D+      +      +P L   +V  NL      LG   + +I  A+
Sbjct: 60  KLDGGDI---DDPDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGG-EELDIAAAL 112

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           E   L A ++ LP              S GQ++   L R+L+    I +LDE TA++D+A
Sbjct: 113 EAVGL-APLAHLP----------FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161

Query: 392 TDAILQRIIREEFP-GSTVITVAH 414
             A+   +IR     G  VI   H
Sbjct: 162 AVALFAELIRAHLAQGGIVIAATH 185

Length = 207

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 88/466 (18%), Positives = 149/466 (31%), Gaps = 72/466 (15%)

Query: 10  TMDFDLPSAISLS----AAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSA 65
           T D D  +A        A A    F  I+ +A ++ P+  + I  +I+        L+  
Sbjct: 117 THDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIG--TAAQLLAFM 174

Query: 66  RELMRMNGTTKA-----PIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHS 120
                      A              + G   ++   +  + F +   + ++   +    
Sbjct: 175 GG---FKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHG-AIQESANNIADLH 230

Query: 121 NAATEWLVLRIEALQNLIILTAALLIVLLP------GKHLPGFVGLSLSYALTLSSIQVI 174
                  +      Q L  L     +             +  FV   L     L  +   
Sbjct: 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSA 290

Query: 175 MTRWYCNLSNNIVSVERIRQFMHL--PPEPPAIIEETK------PPASWPSHGRIELEDL 226
           +      L+   ++ +R+  F      PEP   + +           S      IEL+D 
Sbjct: 291 LPI----LAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV---DSIELKD- 342

Query: 227 KVRYRP-----NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
            V   P     +    L  I     +G  V +VG  G GK+TL      L  P+ G IL+
Sbjct: 343 -VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILL 401

Query: 282 DGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATIS 341
           DG  + +    D R   S I  +  LF   +  +             E       +  + 
Sbjct: 402 DGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG-----------EHASLDNAQQYLQ 450

Query: 342 RLPMLLDSSVSDEGENWSV------GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
           RL   +   V  E   +S       GQ++   L    L+   IL+ DE  A  D A    
Sbjct: 451 RLE--IADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPA---- 504

Query: 396 LQRIIREEF------PGSTVITVAHRVPTITDSDMFMVLSYGELVE 435
            +R   EE        G T+I ++H       +D  + L+ G +V+
Sbjct: 505 FKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 21/239 (8%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDL 294
           L GI    + G  VG+ G  G+GK+TL+  L   V P    +G I   G  + +  ++D 
Sbjct: 17  LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDT 75

Query: 295 RTK-LSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLL----- 347
               + II QE TL    SV  N+     +  NEI     +    A   R   LL     
Sbjct: 76  ERAGIVIIHQELTLVPELSVAENI-----FLGNEITLPGGRMAYNAMYLRAKNLLRELQL 130

Query: 348 -DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EFP 405
              +V+    ++  GQ+QL  + + L K+ R+L+LDE ++S+      IL  IIR+ +  
Sbjct: 131 DADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190

Query: 406 GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA-EYRSSYKR 462
           G   + ++H++  +    D   V+  G+ V        M  +   + +V  E  S Y  
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHVATK-DMSTMSEDDIITMMVGREITSLYPH 248

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 38/249 (15%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-----VEP 274
           ++E   L   Y       L  I+  F++     ++G +G GK+T +  L R+        
Sbjct: 6   KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63

Query: 275 ENGRILIDGLDICSMGLK--DLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIW 328
             G IL+DG +I    +   +LR ++ ++ Q+P  F  S+  N    L   G+     + 
Sbjct: 64  VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLA 123

Query: 329 EAMEKCQLKATI-----SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
           E +E+    A +      RL         +     S GQ+Q  C+ R L     +L++DE
Sbjct: 124 ERVERSLRHAALWDEVKDRL--------HESALGLSGGQQQRLCIARALAVEPEVLLMDE 175

Query: 384 ATASIDSATDAILQRIIREEFPGSTVITVAH------RVPTITDSDMFMVLSYGELVEYD 437
             +++D      ++ +I E     T+I V H      RV     SD+      G+L+E  
Sbjct: 176 PASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARV-----SDVTAFFYMGKLIEVG 230

Query: 438 LPSKLMETN 446
            P++ + T 
Sbjct: 231 -PTEQIFTR 238

Length = 253

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 50/241 (20%)

Query: 190 ERIRQF--MHLPPEPPAIIEETKPPASWPSHGR-IELEDLKVRYRPNTPLVLKGITCTFK 246
           E++        P E    +    PP         +E E++   Y     L+LK ++    
Sbjct: 288 EKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGRLLLKDLSFRID 346

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI--IPQE 304
            G R+ +VG  G+GK+TL+  L   + P +G + +                + I    Q 
Sbjct: 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-------------GETVKIGYFDQH 393

Query: 305 PTLFRGSVRTNLDPLGMYSDNEIWEAMEKC------QLKATISRLPMLLDSSVSDEGENW 358
                   R  LDP        + E  E        +++A + R                
Sbjct: 394 --------RDELDP----DKTVLEELSEGFPDGDEQEVRAYLGRF-GFTGEDQEKPVGVL 440

Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEAT-----ASIDSATDAILQRIIREEFPGSTVITVA 413
           S G++    L ++LL+   +L+LDE T      S+++  +A+       +F G TV+ V+
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL------LDFEG-TVLLVS 493

Query: 414 H 414
           H
Sbjct: 494 H 494

Length = 530

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 55/209 (26%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI----DGLDICSMG-- 290
           VLK ++ T   G  V + G +G+GK+TL+ +L+    P++GRIL+      +D+      
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82

Query: 291 -LKDLRTK--------LSIIPQ--------EPTLFRGSVRTNLDPLGMYSDNEIWEAMEK 333
            + ++R K        L +IP+        EP L RG  R                A  +
Sbjct: 83  EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE--------------AARAR 128

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSV-------GQRQLFCLGRVLLKRNRILVLDEATA 386
            +       +P  L          W +       G++Q   + R  +    IL+LDE TA
Sbjct: 129 ARELLARLNIPERL----------WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTA 178

Query: 387 SIDSATDAILQRIIRE-EFPGSTVITVAH 414
           S+D+A   ++  +I E +  G+ +I + H
Sbjct: 179 SLDAANRQVVVELIAEAKARGAALIGIFH 207

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 35/196 (17%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            +E E+L    R    L    ++ T   G  + + G  G+GKTTL+  L  L+ P+ G +
Sbjct: 2   MLEAENLSCE-RGERTL-FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV 59

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEPTLFRG---------SVRTNL----DPLGMYSDNE 326
              G       ++++R        +  L+ G         +   NL       G  +   
Sbjct: 60  YWQG-----EPIQNVRES----YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAAT 110

Query: 327 IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386
           IWEA+ +  L         L D  V       S GQ++   L R+ L    + +LDE   
Sbjct: 111 IWEALAQVGLAG-------LEDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFT 159

Query: 387 SIDSATDAILQRIIRE 402
           ++D    A+L  ++  
Sbjct: 160 ALDKEGVALLTALMAA 175

Length = 209

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297
           +K ++ T +EG  + ++G  GSGK+TL   L  ++EP +G +LID   +          +
Sbjct: 29  VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88

Query: 298 LSIIPQEPTLF---RGSVRTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD 353
           + +I Q+P+     R  +   LD PL + +D E  E  EK Q+  T+ ++ +L D   S 
Sbjct: 89  IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEP-EQREK-QIIETLRQVGLLPD-HASY 145

Query: 354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE--EFPGSTVIT 411
                + GQ+Q   L R L+ R ++++ DEA AS+D +  + L  ++ E  E  G + I 
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205

Query: 412 VAHRVPTITD-SDMFMVLSYGELVE 435
           V   +  +   SD  +V+  GE+VE
Sbjct: 206 VTQHLGMMKHISDQVLVMHQGEVVE 230

Length = 267

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 39/228 (17%)

Query: 220 RIELEDLKVRYRPNTPLVLK---GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN 276
           +I+++++   +    P  LK    ++    +G  + ++G+TGSGKTT I  L  L+ P+ 
Sbjct: 2   QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61

Query: 277 GRILI-----------DGLDICSMGL-------------KDLRTKLSIIPQ--EPTLFRG 310
           G I                +     L             K++R ++ ++ Q  E  LF  
Sbjct: 62  GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121

Query: 311 SVRTNL--DPLGMYSDNEIWEAMEKCQLKATISRLPM-LLDSSVSDEGENWSVGQRQLFC 367
           ++  ++   P+ M    E  EA ++      +  L    L  S        S GQ++   
Sbjct: 122 TIEKDIIFGPVSMGVSKE--EAKKRAAKYIELVGLDESYLQRSPF----ELSGGQKRRVA 175

Query: 368 LGRVLLKRNRILVLDEATASIDSA-TDAILQRIIREEFPGSTVITVAH 414
           L  +L      LV DE TA +D      IL+        G T+I V H
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223

Length = 305

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 55/237 (23%), Positives = 112/237 (47%), Gaps = 26/237 (10%)

Query: 217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN 276
           +  +I++E+L + Y       LK ++    + +   ++G +G GK+T I  L R+ +   
Sbjct: 9   AQPQIKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66

Query: 277 -----GRILIDGLDICSMGLK--DLRTKLSIIPQEPTLFRGSVRTNL--DPLGMYSDNEI 327
                G++ I+G DI    +   +LR  + ++ Q+P  F  S+  N+   P    ++ + 
Sbjct: 67  NCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKD 126

Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDE----GENWSVGQRQLFCLGRVLLKRNRILVLDE 383
            + + +  L++        L    SD       + S GQ+Q  C+ R L  + +I++ DE
Sbjct: 127 LDGVVENALRSAA------LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180

Query: 384 ATASIDSATDAILQRIIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYD 437
            T+++D  + A ++ +I       T++ V H   +   I+D   F ++  GEL+E+ 
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM--GELIEFG 235

Length = 258

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 32/246 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I + ++K R+       L  I+   K G  V ++G +G+GK+TL+  +  L  P+ GRI 
Sbjct: 3   IRINNVKKRF-GAFG-ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60

Query: 281 IDGLDICSMGLKDLRT---KLSIIPQEPTLFR----------GSVRTNLDPLGMYSDNEI 327
           ++G  +    + +L     K+  + Q   LF           G       P        +
Sbjct: 61  LNGRVLFD--VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118

Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
            E +   QL+    R P  L           S GQRQ   L R L    ++L+LDE   +
Sbjct: 119 EELLRLVQLEGLADRYPAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGA 167

Query: 388 IDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           +D+     L+R +R+  +  G T + V H      + +D  +VL+ G + +   P ++ +
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227

Query: 445 T-NSAF 449
              S F
Sbjct: 228 HPASRF 233

Length = 345

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 19/224 (8%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDIC--SMG 290
           LK I     E     ++G +G GK+T I  L R+VE        G+IL    +I   S  
Sbjct: 40  LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99

Query: 291 LKDLRTKLSIIPQEPTLFRGSVRTNL--DPL--GMYSDNEIWEAMEKCQLKATISRLPML 346
           +++LRT + ++ Q+P  F  S+  N+   P   G+     + E +EK    A I      
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---E 156

Query: 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPG 406
           L   + D     S GQ+Q  C+ R L     ++++DE T+++D  +   ++ +++E    
Sbjct: 157 LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD 216

Query: 407 STVITVAH---RVPTITDSDMFMVLSYGELVEYDLPSKLMETNS 447
            ++I V H   +   I+D   F +   G + EYD   K+    S
Sbjct: 217 YSIIIVTHNMQQAARISDKTAFFLN--GYVNEYDDTDKIFSNPS 258

Length = 271

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 18/220 (8%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-MGLKDLR 295
            L  ++    +G  V ++G  G+GKTTL+  L       +GRI+ DG DI      K +R
Sbjct: 20  ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79

Query: 296 TKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
             ++I+P+   +F R +V  NL   G +++ + ++     ++K      P L +  +   
Sbjct: 80  EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE----RIKWVYELFPRLHERRIQRA 135

Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDE-----ATASIDSATDAILQRIIREEFPGSTV 409
           G   S G++Q+  +GR L+ + R+L+LDE     A   I    D I Q  +RE+  G T+
Sbjct: 136 G-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ--LREQ--GMTI 190

Query: 410 ITVAHRV-PTITDSDMFMVLSYGELVEYDLPSKLMETNSA 448
             V       +  +D   VL  G +V  D    L+  N A
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHVVLEDTGDALL-ANEA 229

Length = 237

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 28/216 (12%)

Query: 253 VVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGS 311
           ++G +G GKTTL+  L    +P++G I++DG D+ ++        ++++ Q   LF   +
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58

Query: 312 VRTNLD-PLGMYS------DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364
           V  N+   L M           + EA+   QL+    R P  L           S GQ+Q
Sbjct: 59  VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQQ 107

Query: 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQ---RIIREEFPGSTVITVAH-RVPTIT 420
              L R L+ + +IL+LDE  +++D      +Q   + I+E+  G T + V H +   +T
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMT 166

Query: 421 DSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
            SD   ++  G++ +   P ++ E  +  +  VA +
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPA--NLFVARF 200

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 34/239 (14%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IELE++   Y     + L G++   KEG    ++G +G GKTTL+  +     P +G IL
Sbjct: 1   IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PLGM--YSDNEI----WEAME 332
           +DG DI    L   +  ++ + Q   LF   +V  N+   L +      EI     EA++
Sbjct: 59  LDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
             QL+   +R P  L           S GQ+Q   + R L+   ++L+LDE       A 
Sbjct: 117 LVQLEGYANRKPSQL-----------SGGQQQRVAIARALVNEPKVLLLDEPL----GAL 161

Query: 393 DAILQRIIREEFP------GSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPSKLME 444
           D  L++ ++ E        G T + V H +   +T SD   V++ G++ +   P ++ E
Sbjct: 162 DLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 10/215 (4%)

Query: 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL- 294
           L +K  +   +EG    ++G +GSGK+T++  L RL+EP  G++LIDG+DI  +   +L 
Sbjct: 42  LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101

Query: 295 ---RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351
              R K++++ Q   L       +    GM          E+ + KA  +   + L++  
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYA 158

Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ-RIIREEFPGS-TV 409
               +  S G RQ   L R L     IL++DEA +++D      +Q  +++ +     T+
Sbjct: 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI 218

Query: 410 ITVAHRV-PTITDSDMFMVLSYGELVEYDLPSKLM 443
           + ++H +   +   D   ++  GE+V+   P +++
Sbjct: 219 VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253

Length = 400

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 61/258 (23%), Positives = 123/258 (47%), Gaps = 31/258 (12%)

Query: 205 IIEETKPPASWPSHGR--IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKT 262
           ++ E    A +P      +E++DL + Y       +  I+   ++     ++G +G GK+
Sbjct: 4   MVREKIEIAPFPEAKEHILEVKDLSIYY--GEKRAVNDISMDIEKHAVTALIGPSGCGKS 61

Query: 263 TLISALFRLVE-----PENGRILIDGLDIC--SMGLKDLRTKLSIIPQEPTLFRGSVRTN 315
           T + ++ R+ +        G IL +GL+I   ++ + +LR ++ ++ Q+P  F  S+  N
Sbjct: 62  TFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNN 121

Query: 316 LDPLGMYS--------DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367
           +     Y+        D  + E++ K  L   +     L  S++S  G     GQ+Q  C
Sbjct: 122 ITHALKYAGERRKSVLDEIVEESLTKAALWDEVK--DRLHSSALSLSG-----GQQQRLC 174

Query: 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT---ITDSDM 424
           + R L  +  +L+LDE  +++D  ++A ++ +I E     ++I V H +     ++D   
Sbjct: 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTA 234

Query: 425 FMVLSYGELVEYDLPSKL 442
           F +   G+LVEYD   ++
Sbjct: 235 FFL--NGDLVEYDQTEQI 250

Length = 268

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 21/179 (11%)

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG---LDIC-SMGLKDLRTKLSIIP 302
                G+ G +G+GK+TL+  +  L +P+ G I+++G    D    + L   + K+ ++ 
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81

Query: 303 QEPTLF-RGSVRTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPM--LLDSSVSDEGENW 358
           Q+  LF   +VR NL   L    + E      +  +   +  L +  LL+   +      
Sbjct: 82  QQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLLGLDHLLNRYPA----QL 132

Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ---RIIREEFPGSTVITVAH 414
           S G++Q   L R L  +  +L+LDE  +++D A    L    + I++      VI V H
Sbjct: 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTH 190

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 29/227 (12%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
           E+ +L V Y  +   +L+G++    +G    V+GR G GKTTL+  L  L+  ++G I +
Sbjct: 2   EVSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59

Query: 282 DGLDICSMGLKDLRTKLSI--IPQEPTLF-RGSVRTNL----DPLGMYS---DNEIWEAM 331
           DG DI  +   + R +  I  +PQ   +F R +V  NL      L   S    +EI+E  
Sbjct: 60  DGEDITKLPPHE-RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYE-- 116

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
                       P+L +      G + S GQ+Q   + R L+ R ++L+LDE T  I  +
Sbjct: 117 ----------LFPVLKEML-GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS 165

Query: 392 TDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
               + R+IR      G  ++ V   +    + +D + V+  G +V 
Sbjct: 166 IIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+ ++  R+  +    L  ++     G  V ++G +GSGKTTL+  +  L  P++G IL
Sbjct: 3   IEVRNVSKRF-GDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
             G D   + +++    +  + Q   LFR  +V  N+   G+       E   + +++A 
Sbjct: 61  FGGEDATDVPVQE--RNVGFVFQHYALFRHMTVFDNV-AFGL-RVKPRSERPPEAEIRAK 116

Query: 340 ISRLPML--LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
           +  L  L  LD          S GQRQ   L R L    ++L+LDE   ++D+     L+
Sbjct: 117 VHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 176

Query: 398 RIIRE 402
           R +R 
Sbjct: 177 RWLRR 181

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.3 bits (143), Expect = 6e-10
 Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 24/241 (9%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---- 276
           I++ +L   Y  +T  +L+G++    +     ++G +G GK+T +  L R+ E E+    
Sbjct: 8   IKVNNLSFYY--DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRV 65

Query: 277 -GRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNEIWE 329
            GR+     +I    + L  LR ++S++  +P LF  SV  N+      +G     EI +
Sbjct: 66  EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD 125

Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
            +E   LK   + L   +   +     + S GQ+Q  C+ R L  + ++L++DE    +D
Sbjct: 126 IVESA-LKD--ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182

Query: 390 SATDAILQRIIREEFPGS--TVITVAHRVPTITDSDMFMVLSYG------ELVEYDLPSK 441
                 ++ +I+     S  T++ V+H +  ++    F     G      +LVE+ L  K
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242

Query: 442 L 442
           +
Sbjct: 243 I 243

Length = 261

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 25/193 (12%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           VLKGI  T   G    ++G  G+GK+TL+  +  +V P++G + I G + C+        
Sbjct: 26  VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG-NPCARLTPAKAH 84

Query: 297 KLSI--IPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEK------CQLKATISRLPMLL 347
           +L I  +PQEP LF   SV+ N+   G+       + M++      CQL          L
Sbjct: 85  QLGIYLVPQEPLLFPNLSVKENI-LFGLPKRQASMQKMKQLLAALGCQLD---------L 134

Query: 348 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA-TDAILQRIIREEFPG 406
           DSS      +  V  RQ+  + R L++ +RIL+LDE TAS+  A T+ +  RI      G
Sbjct: 135 DSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQG 190

Query: 407 STVITVAHRVPTI 419
             ++ ++H++P I
Sbjct: 191 VGIVFISHKLPEI 203

Length = 510

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 41/231 (17%)

Query: 221 IELEDLKVRYRPNTPLVLK---GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I++ ++  RY      V+K    ++   KEG   G+VG +G+GKTTL   +  ++EP +G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339

Query: 278 ----RILIDGLDICSMGLKDLRTK----LSIIPQEPTLF-RGSVRTNL-DPLGMYSDNEI 327
               R+  + +D+   G  D R +    + I+ QE  L+   +V  NL + +G+   +E+
Sbjct: 340 EVNVRVGDEWVDMTKPGP-DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL 398

Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDE-----GENWSVGQRQLFCLGRVLLKRNRILVLD 382
                  ++KA I+   +  D   ++E      +  S G+R    L +VL+K  RI++LD
Sbjct: 399 ------ARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452

Query: 383 EATASID-----SATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL 428
           E T ++D       T +IL+   REE    T I V+H        DM  VL
Sbjct: 453 EPTGTMDPITKVDVTHSILKA--REEM-EQTFIIVSH--------DMDFVL 492

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 7/149 (4%)

Query: 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 303
              +G  V ++G +G+GK+TL++ +   +EP +G I ++       GL   +  +S++ Q
Sbjct: 20  NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLFQ 77

Query: 304 EPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362
           E  LF   +VR N+  LG++   ++  A ++ ++     +  + +   +    E  S GQ
Sbjct: 78  ENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVDAAQQ--VGIADYLDRLPEQLSGGQ 133

Query: 363 RQLFCLGRVLLKRNRILVLDEATASIDSA 391
           RQ   L R L++ N IL+LDE  +++D  
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALDPL 162

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 38/247 (15%)

Query: 221 IELEDLKVRY-----------RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF 269
           +E+ DLKV +            P T   + G+T    EG  +GVVG +G GK+T   A+ 
Sbjct: 9   LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAII 68

Query: 270 RLVEPENGRILIDGLDICSMGLKDLRTK---LSIIPQEPTLFRGSVRTNL-----DPLGM 321
            LV+  +G +   G D+  M   + R     + +I Q+P L   + R  +     +PL  
Sbjct: 69  GLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP-LASLNPRMTIGEIIAEPLRT 127

Query: 322 YSDNEIWEAMEKCQLKATISRLPM---LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378
           Y        + + ++K  +  + +   LL + ++     +S GQ Q   + R L+   ++
Sbjct: 128 YHPK-----LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL 182

Query: 379 LVLDEATASIDSATDA----ILQRIIREEFPGSTVITVAHR---VPTITDSDMFMVLSYG 431
           ++ DE  +++D +  A    +LQ++ RE   G ++I +AH    V  I+D  + M L + 
Sbjct: 183 IICDEPVSALDVSIQAQVVNLLQQLQREM--GLSLIFIAHDLAVVKHISDRVLVMYLGHA 240

Query: 432 -ELVEYD 437
            EL  YD
Sbjct: 241 VELGTYD 247

Length = 331

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 35/215 (16%)

Query: 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 303
           +  E   +G++G  G GKTT I  L  +++P+ G I I+   +            S  PQ
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV------------SYKPQ 68

Query: 304 EPTL-FRGSVRTNLDPL--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 360
                + G+VR  L  +    Y+             K  I++ P+ ++  +  E    S 
Sbjct: 69  YIKADYEGTVRDLLSSITKDFYTHP---------YFKTEIAK-PLQIEQILDREVPELSG 118

Query: 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPT 418
           G+ Q   +   L K   I +LDE +A +D     +  ++IR   E    T   V H +  
Sbjct: 119 GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178

Query: 419 ITD-SDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           I   +D  +V   GE      PS     N   S  
Sbjct: 179 IDYLADRLIVFE-GE------PSVNGVANPPQSLR 206

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 10/208 (4%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM-G 290
           VL  ++  F       ++G TGSGKTT +  L R+ +       +G +L+ G  I +   
Sbjct: 36  VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95

Query: 291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPM--LLD 348
           + + R ++ ++ Q P  F  S+  N+   G+ +   +     +   +A ++ + +   + 
Sbjct: 96  VLEFRRRVGMLFQRPNPFPMSIMDNV-LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK 154

Query: 349 SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGST 408
             +SD     S GQ+QL CL R L     +L+LDE T+++D  T   ++  IR      T
Sbjct: 155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT 214

Query: 409 VITVAHRVPTITD-SDMFMVLSYGELVE 435
           VI V H +      SD   +   G LVE
Sbjct: 215 VIIVTHNLAQAARISDRAALFFDGRLVE 242

Length = 276

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 15/218 (6%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PEN 276
           E+ +    Y   T  VL  +    K       +G +G GK+T +  L +L +        
Sbjct: 82  EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141

Query: 277 GRILIDGLDICSMGLK--DLRTKLSIIPQEPTLFRGSVRTNL--DPLGM-YSDNEIWEAM 331
           G I   G +  S  +   +LRT++ ++ Q+PT F  S+  N+   P     +D +I E +
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201

Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
            +  LK+  + L   +   +   G   S GQ+Q  C+ R +     +L++DE T+++D  
Sbjct: 202 VEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259

Query: 392 TDAILQRIIREEFPGSTVITVAHRVPT---ITDSDMFM 426
             A ++ +I E     ++I V H +     I+D  +F 
Sbjct: 260 ATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFF 297

Length = 329

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 55/214 (25%), Positives = 83/214 (38%), Gaps = 35/214 (16%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENGRI 279
           E++DL V        +LKG+  T KEG    ++G  GSGK+TL   +      E   G I
Sbjct: 5   EIKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63

Query: 280 LIDGLDICSMGLKDLRTKLSIIP--QEPTLFRG-----------SVRTNLDPLGMYSDNE 326
           L DG DI  +   D R +  I    Q P    G           + R     +      E
Sbjct: 64  LFDGEDILEL-SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122

Query: 327 IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386
           + E  E   L          L+  V    E +S G+++   + ++LL   ++ +LDE   
Sbjct: 123 LKEKAELLGLD------EEFLERYV---NEGFSGGEKKRNEILQLLLLEPKLAILDE--- 170

Query: 387 SIDSATDAILQRIIREEF-----PGSTVITVAHR 415
             DS  D    +I+ E        G  V+ + H 
Sbjct: 171 -PDSGLDIDALKIVAEGINALREEGRGVLIITHY 203

Length = 251

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 33/180 (18%)

Query: 253 VVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLF 308
           ++G +GSGK+TL+  + RL+EP +G++LIDG DI +M  K+L    R K+S++ Q   L 
Sbjct: 55  IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114

Query: 309 -RGSVRTN----LDPLGMYSDNEI---WEAMEKCQLKATISRLPMLLDSSVSDEGENWSV 360
              +V  N    L+  G+          EA+E   L+    + P  L           S 
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL-----------SG 163

Query: 361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF------PGSTVITVAH 414
           G +Q   L R L     IL++DEA     SA D +++R +++E          T++ + H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAF----SALDPLIRREMQDELLRLQAELQKTIVFITH 219

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 30/243 (12%)

Query: 221 IELEDLKVRYRPNTPL---VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           I L+++   Y+  TP     L  +  T ++G+    +G TGSGK+T++  L  L  P  G
Sbjct: 3   INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62

Query: 278 RILIDGLDICSMG----LKDLRTKLSIIPQ--EPTLFRGSVRTNL----DPLGMYSDNEI 327
            + +D   I S      +K +R K+ ++ Q  E  LF  +V  ++       G+  +   
Sbjct: 63  SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122

Query: 328 WEAMEKCQL----KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
             A EK  L    ++   + P  L           S GQ +   +  +L    +ILVLDE
Sbjct: 123 ALAREKLALVGISESLFEKNPFEL-----------SGGQMRRVAIAGILAMEPKILVLDE 171

Query: 384 ATASIDSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441
            TA +D      L  + ++    G T++ V H +  + + +D   VL  G+LV    P  
Sbjct: 172 PTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231

Query: 442 LME 444
           + +
Sbjct: 232 IFQ 234

Length = 280

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 181 NLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPL-VLK 239
           N++  + S+E       +    P ++E            +I+ ++++  Y     + + K
Sbjct: 344 NITEYMKSLEATNSLYEIINRKP-LVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYK 402

Query: 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-DGLDICSMGLKDLRTKL 298
            +  T  EG     VG +G GK+T++  + RL +P  G I+I D  ++  + LK  R+K+
Sbjct: 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKI 462

Query: 299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAME 332
            ++ Q+P LF  S++ N+    +YS  ++ EA+ 
Sbjct: 463 GVVSQDPLLFSNSIKNNIK-YSLYSLKDL-EALS 494

Length = 1466

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 23/151 (15%)

Query: 250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSIIPQEP 305
              + GR+GSGKTTLI  +  L  P+ G I+++G  +        L   + ++  + QE 
Sbjct: 25  VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84

Query: 306 TLF-RGSVRTNLDPLGMY-----SDNEIWEAM-EKCQLKATISRLPMLLDSSVSDEGENW 358
            LF   SVR NL   GM           +E + E   +   + RLP  L           
Sbjct: 85  RLFPHLSVRGNLR-YGMKRARPSERRISFERVIELLGIGHLLGRLPGRL----------- 132

Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEATASID 389
           S G++Q   +GR LL   R+L++DE  A++D
Sbjct: 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 27/196 (13%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG--LDICSM----G 290
            L  IT    EG  + ++G +G+GK++L+  L  L  P +G + I G   D         
Sbjct: 17  ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76

Query: 291 LKDLRTKLSIIPQEPTLF-RGSVRTNL-----DPLGMYSDNEIWEAME---KCQLKATIS 341
           ++DLR  + ++ Q+  L+   +V+ NL       LG+  D  +  A +   + +LK    
Sbjct: 77  IRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYAD 136

Query: 342 RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR 401
           R P+ L           S GQ+Q   + R L+   ++L+ DE TA++D    A +  II+
Sbjct: 137 RYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK 185

Query: 402 E-EFPGSTVITVAHRV 416
           E    G T + V H V
Sbjct: 186 ELAETGITQVIVTHEV 201

Length = 242

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 17/216 (7%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LR 295
           V++ ++ T   G  VG++G  G+GKTT    +  +V  + G I+ID  DI  + L    R
Sbjct: 18  VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77

Query: 296 TKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLD----SS 350
             +  +PQE ++FR  SV  NL  +      +I + +   Q +    R   L++      
Sbjct: 78  RGIGYLPQEASIFRRLSVYDNLMAV-----LQIRDDLSAEQRE---DRANELMEEFHIEH 129

Query: 351 VSDE-GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EFPGST 408
           + D  G++ S G+R+   + R L    + ++LDE  A +D  +   ++RII      G  
Sbjct: 130 LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189

Query: 409 VITVAHRV-PTITDSDMFMVLSYGELVEYDLPSKLM 443
           V+   H V  T+   +   ++S G L+ +  P++++
Sbjct: 190 VLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225

Length = 241

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 21/226 (9%)

Query: 223 LEDLKVRYRPNTPLV--LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +  LK  ++     V  LKGI+ T ++G  VG +G  G+GKTT +  L  L++P +G + 
Sbjct: 20  IGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR 79

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
           + GL       K LR    +  Q+  L+      +L  +  +        +   + K  +
Sbjct: 80  VAGLVPWKRRKKFLRRIGVVFGQKTQLW-----WDLPVIDSFYLLAAIYDLPPARFKKRL 134

Query: 341 SRLPMLL------DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
             L  LL      D+ V       S+GQR    +   LL    IL LDE T  +D     
Sbjct: 135 DELSELLDLEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190

Query: 395 ILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYD 437
            ++  ++E     G+TV+  +H +  I   +   +V+  G L+ YD
Sbjct: 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL-YD 235

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 42/224 (18%)

Query: 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLR 295
           GIT  F         G +GSGKT+LI+ +  L  P+ GRI ++G  +        L   +
Sbjct: 25  GITALF---------GPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75

Query: 296 TKLSIIPQEPTLFRG-SVRTNLDPLGMY--SDNEIWEAMEKCQLKATISRLPMLLDSSVS 352
            ++  + Q+  LF   +VR NL   GM+     +  + +    ++  + R P  L     
Sbjct: 76  RRIGYVFQDARLFPHYTVRGNLR-YGMWKSMRAQFDQLVALLGIEHLLDRYPGTL----- 129

Query: 353 DEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA----ILQRIIRE-EFPGS 407
                 S G++Q   +GR LL    +L++DE  AS+D          L+R+  E   P  
Sbjct: 130 ------SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP-- 181

Query: 408 TVITVAHRVPTITD-SDMFMVLSYGELVEYD-----LPSKLMET 445
            ++ V+H +  +   +D  +VL  G++           S     
Sbjct: 182 -ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPP 224

Length = 352

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 12/161 (7%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           +  G++ T   G  + V G  GSGKTTL+  L  L  P  GR+L++G  +        R 
Sbjct: 15  LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74

Query: 297 KLSIIPQEPTLFRGSVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEG 355
            L +          SV  NL      +SD ++ EA+ +  L     R    L        
Sbjct: 75  LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQL-------- 126

Query: 356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
              S GQ++   L R+LL    + +LDE T ++D A  A  
Sbjct: 127 ---SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARF 164

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 33/217 (15%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---GLKD 293
           +LKG+    K G  V +VG +GSGK+TL++ L  L +P +G + + G  +  +       
Sbjct: 25  ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84

Query: 294 LRTK--------LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEA---MEKCQLKATISR 342
           LR +          +IP    L   +V   L+  G  S +    A   +E   L   ++ 
Sbjct: 85  LRARHVGFVFQSFHLIPNLTAL--ENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH 142

Query: 343 LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA----ILQR 398
            P  L           S G++Q   L R    R  +L  DE T ++D AT      +L  
Sbjct: 143 YPAQL-----------SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191

Query: 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVE 435
           + RE   G+T++ V H        D  + L  G LVE
Sbjct: 192 LNRER--GTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 58/236 (24%), Positives = 106/236 (44%), Gaps = 41/236 (17%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--PE---NGRILIDGLDICS--MG 290
           LK I  +  E     ++G +G GK+T I  L  +++  P     G +  +G +I    + 
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 291 LKDLRTKLSIIPQEPTLFRGSVRTNL--DPL--GMYSDNEIWEAMEKCQLKATISRLPML 346
           L +LR  + ++ Q+   F  S+  N+   P   G  +  ++ E +EK            L
Sbjct: 88  LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKS-----------L 136

Query: 347 LDSSVSDEGEN--------WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
            D ++ DE ++         S GQ+Q  C+ R L     +L++DE T+++D  +   ++ 
Sbjct: 137 KDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE 196

Query: 399 IIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451
           +I +     T++ V H   +   ++D   F  +  GELVE +      +TN  FS 
Sbjct: 197 LILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM--GELVECN------DTNKMFSN 244

Length = 259

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 61/266 (22%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 199 PPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTG 258
                   E T          +++ +D    +     ++L+ ++ +   G    V+G TG
Sbjct: 640 EGGTGGGHEATPTSERSAKTPKMKTDD---FFELEPKVLLRDVSVSVPRGKLTVVLGATG 696

Query: 259 SGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP 318
           SGK+TL+ +L    E   GR+  +               ++ +PQ+  +   +VR N+  
Sbjct: 697 SGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNI-- 741

Query: 319 LGMYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK 374
             ++ D E    + +A+   QL+A +++L   L++ + ++G N S GQ+    L R +  
Sbjct: 742 --LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA 799

Query: 375 RNRILVLDEATASIDSATDA-ILQRIIREEF----PGSTVITVAHRVPTITDSDMFMVLS 429
              + +LD+      SA DA + +R++ E F     G T +   H+V  +  +D  + L 
Sbjct: 800 NRDVYLLDDPL----SALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855

Query: 430 YGELVEYDLPSKLMETNSAFSKLVAE 455
            G  VE+   S      S ++ L AE
Sbjct: 856 DGR-VEFSGSSADFMRTSLYATLAAE 880

Length = 1560

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 58.9 bits (142), Expect = 4e-09
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
           D+E+ +  +K  +   +S LP   ++ V       S GQ+Q   + R +++  +IL+LDE
Sbjct: 546 DSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605

Query: 384 ATASIDSATDAILQRIIREEFPGSTVIT--VAHRVPTITDSDMFMVLSYGE 432
           AT+S+D+ ++ ++Q+ I         IT  +AHR+ TI  ++   VLS  E
Sbjct: 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656

Length = 1466

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 54/240 (22%), Positives = 95/240 (39%), Gaps = 40/240 (16%)

Query: 217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE- 275
                    LK +       +L  ++   + G  + ++G +GSGKTTL+ A+   VE   
Sbjct: 2   RVLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG 61

Query: 276 --NGRILIDG--------LDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN 325
             +G+IL +G            +   +D      +  +E   +     T +  L   S +
Sbjct: 62  TTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTY-----TAILRLPRKSSD 116

Query: 326 EIWEAMEKCQLKATISRLPMLLDSSVSDEG-ENWSVGQRQLFCLGRVLLKRNRILVLDEA 384
            I +             L  L  + +     +  S G+R+   +   LL   ++L+LDE 
Sbjct: 117 AIRKKR------VEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEP 170

Query: 385 TASIDSATD----AILQRIIREEFPGSTVITVAHRVPTITDSDMF------MVLSYGELV 434
           T+ +DS T     + L ++ R       VI   H+ P    SD+F      ++LS GE+V
Sbjct: 171 TSGLDSFTALNLVSTLSQLARR---NRIVILTIHQ-PR---SDLFRLFDRILLLSSGEIV 223

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 49/243 (20%), Positives = 108/243 (44%), Gaps = 28/243 (11%)

Query: 221 IELEDLKVRYRPNTP---LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           + +++L   +        + L  I+ TF++     ++G +GSGK+TL++    L++ + G
Sbjct: 22  LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG 81

Query: 278 RILID----GLDICSMG------------LKDLRTKLSIIPQEP--TLFRGSVRTNLDPL 319
            I +     G    +               K+LR ++S++ Q P   LF+ ++  ++   
Sbjct: 82  TIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDI--- 138

Query: 320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE-NWSVGQRQLFCLGRVLLKRNRI 378
            M+    +     + +  A      M LD S  +      S GQ++   +  +L  +  I
Sbjct: 139 -MFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197

Query: 379 LVLDEATASIDSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436
           L+ DE TA +D   +  + ++I + +    TV  + H +  + + +D  +V+  G++++ 
Sbjct: 198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257

Query: 437 DLP 439
             P
Sbjct: 258 GTP 260

Length = 320

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 39/221 (17%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-----LDICSMGL 291
            LK I+    +G RVG++G  G+GK+TL+  +  + +P +G++ + G     +++   G 
Sbjct: 42  ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-GAGF 100

Query: 292 KDLRTKLSIIPQ----EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLL 347
                     P+    E    RG +      LG+ +  EI E +++       + L   +
Sbjct: 101 ---------DPELTGRENIYLRGLI------LGL-TRKEIDEKVDEI---IEFAELGDFI 141

Query: 348 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA-TDAILQRIIREEFP- 405
           D  V    + +S G                IL+LDE  A  D+A  +  L+R+   E   
Sbjct: 142 DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERL--NELVE 195

Query: 406 -GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
              T++ V+H +  I    D  + L +G++     P +++ 
Sbjct: 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236

Length = 249

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.6 bits (136), Expect = 6e-09
 Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 21/217 (9%)

Query: 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPEN---GRILI--DGLDICS 288
             LK I     E     ++G +G GK+T +    R+  + P N   G I++  D ++I S
Sbjct: 30  QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89

Query: 289 MGLK--DLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWEAMEKCQLKATISR 342
             +   ++R ++S++ Q+P  F  S+  N    L   G+   + + E +E     A    
Sbjct: 90  PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA--- 146

Query: 343 LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE 402
           L   +   + D   N S GQ+Q  C+ R L     IL+ DE T+++D    A ++ +I +
Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206

Query: 403 EFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEY 436
                T++ V H   +   ++D   +M +  GEL+E+
Sbjct: 207 LKNKVTILIVTHNMQQAARVSDYTAYMYM--GELIEF 241

Length = 265

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 54.7 bits (133), Expect = 7e-09
 Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 48/188 (25%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            +E+  L V         ++ ++   + G  VG+ G  G+G+T L  ALF L  P +G I
Sbjct: 4   VLEVRGLSV------KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI 57

Query: 280 LIDGLDICSMGLKD-LRTKLSIIPQEPT---LFRG-SVRTNLDPLGMYSDNEIWEAMEKC 334
            +DG  +     +D +R  ++ +P++     L    SV  N+                  
Sbjct: 58  TLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI------------------ 99

Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID-SATD 393
                   L  LL           S G +Q   L R L +  R+L+LDE T  +D  A  
Sbjct: 100 -------ALSSLL-----------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141

Query: 394 AILQRIIR 401
            I + I  
Sbjct: 142 EIYRLIRE 149

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 16/187 (8%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-- 294
           VLKGI+     G  V +VG +GSGK+TL++ L  L +P +G   + G D+ ++    L  
Sbjct: 23  VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82

Query: 295 --RTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351
             R     I Q   L    +   N++   +Y+  E  + + + Q    + RL   L+  V
Sbjct: 83  LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ--ELLQRLG--LEDRV 138

Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD----AILQRIIREEFPGS 407
             +    S GQ+Q   + R L+   ++++ DE T ++DS +     AIL + +R+   G 
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ-LRDR--GH 195

Query: 408 TVITVAH 414
           TVI V H
Sbjct: 196 TVIIVTH 202

Length = 648

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 62/258 (24%), Positives = 112/258 (43%), Gaps = 34/258 (13%)

Query: 207 EETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLIS 266
           + +  PA+      IE  DL V Y       L  ++    E     ++G +G GK+T + 
Sbjct: 26  DPSGDPAASSGETVIEARDLNVFY--GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLR 83

Query: 267 ALFRL--------VEPENGRILIDGLDICSMGLKD--LRTKLSIIPQEPTLFRGSVRTNL 316
            + R+        VE   G +   G ++    +    LR ++ ++ Q+P  F  S+  N+
Sbjct: 84  CINRMNDLIDAARVE---GELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNV 140

Query: 317 -------DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369
                     G   D  + E++ +  L   +      LDSS    G + S GQ+Q  C+ 
Sbjct: 141 AYGLKIQGYDGDI-DERVEESLRRAALWDEVKDQ---LDSS----GLDLSGGQQQRLCIA 192

Query: 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH---RVPTITDSDMFM 426
           R +     ++++DE  +++D    + ++ +I E     TV+ V H   +   I+D    +
Sbjct: 193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTA-V 251

Query: 427 VLSYGELVEYDLPSKLME 444
            L+ GELVE+D   K+ E
Sbjct: 252 FLTGGELVEFDDTDKIFE 269

Length = 285

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 57/210 (27%), Positives = 86/210 (40%), Gaps = 43/210 (20%)

Query: 229 RYRPNTPLVLKGITCTFKE-------------GTRVGVVGRTGSGKTTLISALFRLVEPE 275
           R    TPL+L  ++  + E             G  V VVGR+G GK+TL+  L  L  P 
Sbjct: 6   RLNQGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65

Query: 276 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEAMEKC 334
            G +L       +  L + R    ++ Q+  L     V  N+  LG+      W      
Sbjct: 66  AGELLAG-----TAPLAEAREDTRLMFQDARLLPWKKVIDNVG-LGLKGQ---WRDAALQ 116

Query: 335 QLKATISRLPMLLDSSVSDEGENW----SVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
            L A            ++D    W    S GQ+Q   L R L+ R  +L+LDE   ++D+
Sbjct: 117 ALAAV----------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166

Query: 391 ATDAILQRII----REEFPGSTVITVAHRV 416
            T   +Q +I    ++   G TV+ V H V
Sbjct: 167 LTRIEMQDLIESLWQQH--GFTVLLVTHDV 194

Length = 257

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 41/238 (17%)

Query: 221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           ++ E+L  RY+       VLKG++ +  +G  V +VG +GSGK+TL+  L  L  P +G 
Sbjct: 2   LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61

Query: 279 ILIDGLDICSMG---LKDLRTK-LSIIPQ---------------EPTLFRGSVRTNLDPL 319
           +L +G  +  +       LR K L  I Q                P L            
Sbjct: 62  VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKE---- 117

Query: 320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL 379
              +    +E +EK  L+  I+  P  L           S G+RQ   + R L+ +  ++
Sbjct: 118 ---AKERAYEMLEKVGLEHRINHRPSEL-----------SGGERQRVAIARALVNQPSLV 163

Query: 380 VLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVE 435
           + DE T ++D+    I+  ++ E      ++ + V H +      D  + +  G+L  
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 34/177 (19%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-- 294
           V+K I+ T + G  +G+VG +GSGK+T   AL RL+  + G I  DG  + ++  + L  
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLP 359

Query: 295 -RTKLSIIPQEPTLFRGSVRTNLDPLGMYS---------------DNEIWEAMEKCQLK- 337
            R ++ ++ Q+P     S+   L+ L +                 + ++   ME+  L  
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416

Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
            T  R P             +S GQRQ   + R L+ +  +++LDE T+S+D    A
Sbjct: 417 ETRHRYP-----------AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462

Length = 529

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 18/206 (8%)

Query: 222 ELEDLKVRYRPNTPLV-LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           E+EDL V+      +  +K ++   + G  VG+ G  G+G++ L+ A+  L +P +GRIL
Sbjct: 259 EVEDLSVK--DRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL 316

Query: 281 IDGLDICSMGLKDLRTKLSI--IPQEP---------TLFRGSVRTNLDPLGMYSDNEI-W 328
           ++G D+        R +L +  +P++          +L    V    D         +  
Sbjct: 317 LNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDR 376

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
            A+ K      +     +   S      + S G +Q   L R L +R  +L+  + T  +
Sbjct: 377 RAIRK--FARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGL 434

Query: 389 D-SATDAILQRIIREEFPGSTVITVA 413
           D  A + I +R++     G  V+ ++
Sbjct: 435 DVGAIEFIHERLLELRDAGKAVLLIS 460

Length = 501

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 49/217 (22%)

Query: 232 PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG- 290
           P    +LK I+ +F  G ++GV+G  G+GK+TL+            RI+  G+D    G 
Sbjct: 15  PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMA-GVDKEFNGE 61

Query: 291 -LKDLRTKLSIIPQEPTL-----FRGSVRTNLDPLGMYSD--NEIWEAM----------- 331
                  K+  +PQEP L      R +V   +  +    D  NEI               
Sbjct: 62  ARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121

Query: 332 -EKCQLKATI---------SRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRNR 377
            E+ +L+  I          +L + +D+      +      S G+R+   L R+LL +  
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPD 181

Query: 378 ILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
           +L+LDE T  +D+ + A L++ ++ E+PG TV+ V H
Sbjct: 182 MLLLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 25/179 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           ++L D+   Y  + P+       T + G RV ++G +G+GK+TL++ +   + P +G + 
Sbjct: 2   LKLTDITWLYH-HLPMRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTN----LDP---LGMYSDNEIWEAME 332
           ++G D  +      R  +S++ QE  LF   +V  N    L+P   L      ++     
Sbjct: 58  LNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIAR 115

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           +  ++  ++RLP  L           S GQRQ   L R L++   IL+LDE  +++D A
Sbjct: 116 QMGIEDLLARLPGQL-----------SGGQRQRVALARCLVREQPILLLDEPFSALDPA 163

Length = 232

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 31/208 (14%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-- 294
           VL  I      G  V + G +GSGKTTL++ +  L   + G + + G ++     K+L  
Sbjct: 20  VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 295 -RTKLSIIPQEPTLF-----RGSVRTNLDPLGMYSDNEIWE---AM-EKCQLKATISRLP 344
            R  +  I Q   L      R +V+  L+     S  E  E   AM E   L   +   P
Sbjct: 80  LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD----AILQRII 400
                       N S GQ+Q   + R L+ R ++++ DE TA++DS +      ++Q++ 
Sbjct: 140 -----------HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA 188

Query: 401 REEFPGSTVITVAH--RVPTITDSDMFM 426
           RE+  G T++ V H  R+  + D  + M
Sbjct: 189 REQ--GCTILIVTHDNRILDVADRIVHM 214

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 32/171 (18%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---GLKD 293
           VL  ++ + K G  V ++GR+G GK+TL   L  L  P  G +   G  +  +     K 
Sbjct: 27  VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86

Query: 294 LRTKLSIIPQE-PTLF--RGSVR----------TNLDPLGMYSD-NEIWEAMEKCQLKAT 339
            R  + ++ Q+  +    R +VR           +LD     +  +E+  A++   L  +
Sbjct: 87  FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVD---LDDS 143

Query: 340 I-SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
           +  + P  L           S GQ Q  CL R L    ++L+LDEA +++D
Sbjct: 144 VLDKRPPQL-----------SGGQLQRVCLARALAVEPKLLILDEAVSNLD 183

Length = 268

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           +   +   +EG    ++G +GSGK+TL+  L RL+EP  G IL+DG DI  +   +LR 
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102

Length = 386

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 58/260 (22%), Positives = 115/260 (44%), Gaps = 24/260 (9%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGI---TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE 275
             I L+++   Y   TP   K +   + TFK+     V+G TGSGK+T+I     L+  E
Sbjct: 5   KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64

Query: 276 NGRILIDGLDICS-----MGLKDLRTKLSIIPQEP--TLFRGSVRTNL--DPLGMYSDNE 326
            G+ ++    I +       +K LR ++ ++ Q P   LF+ ++  ++   P+ +  + +
Sbjct: 65  TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124

Query: 327 IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA 386
             EA +K      + +LP   +  V       S GQ++   L  ++      LVLDE T 
Sbjct: 125 --EAYKKVPELLKLVQLP---EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTG 179

Query: 387 SIDSATDA----ILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441
            +D   +     + +R+ +E      +I V H +  +   +D  +V+  G+++    P +
Sbjct: 180 GLDPKGEEDFINLFERLNKEY--KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237

Query: 442 LMETNSAFSKLVAEYRSSYK 461
           +       +K+  +    Y+
Sbjct: 238 IFSNQELLTKIEIDPPKLYQ 257

Length = 289

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 43/245 (17%)

Query: 221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-- 276
           + + +L V +     T   +KGI+   + G  + +VG +GSGK+    ++  L+ P    
Sbjct: 7   LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-PSPAA 65

Query: 277 ----GRILIDGLDICSMGLKDLR----TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW 328
               G IL DG D+ +   + LR     K+ +I QEP        T+L+PL      ++ 
Sbjct: 66  AHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPL-HTIGKQLA 117

Query: 329 EA------MEKCQLKATISRLPMLLDSSVSDEGEN--------WSVGQRQLFCLGRVLLK 374
           E       + +   +A   R   LL+     E E          S GQRQ   +   L  
Sbjct: 118 EVLRLHRGLSRAAARA---RALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174

Query: 375 RNRILVLDEATASIDSATDAILQRIIRE---EFPGSTVITVAHRVPTITD-SDMFMVLSY 430
              +L+ DE T ++D    A +  +++E   E  G  ++ + H +  +   +D   V+ +
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKFADRVYVMQH 233

Query: 431 GELVE 435
           GE+VE
Sbjct: 234 GEIVE 238

Length = 534

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 69/194 (35%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IELE+L   Y     L+LK I+ T   G R+G+VGR G+GK+TL+  +        G + 
Sbjct: 1   IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLI-------AGEL- 50

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATI 340
                                P E  +  GS                            I
Sbjct: 51  --------------------EPDEGIVTWGS-------------------------TVKI 65

Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400
                L            S G++    L ++LL+   +L+LDE T  +D  +   L+  +
Sbjct: 66  GYFEQL------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113

Query: 401 REEFPGSTVITVAH 414
           + E+PG TVI V+H
Sbjct: 114 K-EYPG-TVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 64/278 (23%), Positives = 125/278 (44%), Gaps = 39/278 (14%)

Query: 206 IEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI 265
           I+  K  +       I L+++ + Y   T   +K + C    G    ++G +G GK+T++
Sbjct: 2   IKTNKKISKNII---ISLQNVTISY--GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVL 56

Query: 266 SALFR---LVE--PENGRILIDGLDICSMGLK--DLRTKLSIIPQEPTLFRGSVRTNL-- 316
            +L R   L+E     GR+L DG D+    +   ++R ++ ++ Q+P  F  S+  N+  
Sbjct: 57  RSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAF 116

Query: 317 -DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS---SVSDEGENWSVGQRQLFCLGRVL 372
              +  Y+ + + E +E+   KA +       D     +++ G + S GQ+Q  C+ R +
Sbjct: 117 GARINGYTGD-MDELVERSLRKAAV------WDECKDKLNESGYSLSGGQQQRLCIARTI 169

Query: 373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRV-PTITDSDM---FMVL 428
                ++++DE  +++D  +   ++  + E     T++ V H +   +  SDM   F   
Sbjct: 170 AIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAE 229

Query: 429 SY--------GELVEYDLPSKLMETNSAFSKLVAEYRS 458
                     G LVE++   K+   NS   K   +Y S
Sbjct: 230 EVEGGSGGKVGYLVEFNETKKIF--NSPKQKATQDYIS 265

Length = 269

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 56/241 (23%), Positives = 115/241 (47%), Gaps = 29/241 (12%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL------VE 273
           ++E ++L + Y       L  I     E     ++G +G GK+T +  L R+      V+
Sbjct: 4   KMESKNLNLWYGEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61

Query: 274 PENGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTNL--DPL--GMYSDNEI 327
            E G +L+DG +I    + + +LR ++ ++ Q+P  F  S+  N+   P   G+    E+
Sbjct: 62  IE-GEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKEL 120

Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDEGEN---WSVGQRQLFCLGRVLLKRNRILVLDEA 384
            + +E    KA       L D    D  ++    S GQ+Q  C+ R +  +  ++++DE 
Sbjct: 121 DKIVEWALKKAA------LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174

Query: 385 TASIDSATDAILQRIIREEFPGSTVITVAH---RVPTITDSDMFMVLSYGELVEYDLPSK 441
           T+++D  +   ++ ++ E     T++ V H   +   ++D   F ++  G+L+E++   K
Sbjct: 175 TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFNKTEK 232

Query: 442 L 442
           +
Sbjct: 233 I 233

Length = 251

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 43/253 (16%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR---LVEPEN- 276
           +E+ +L + Y       L  I+    +      +G +G GK+TL+    R   LV+    
Sbjct: 26  LEVRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83

Query: 277 -GRILIDGLDIC--SMGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWE 329
            G I +DG +I    + + +LR ++ ++ Q P  F  S+  N    L   G+ +   + E
Sbjct: 84  EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDE 143

Query: 330 AMEKCQLKATI-----SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384
           A+E+    A +      RL         +     S GQ+Q   + R +     +L+LDE 
Sbjct: 144 AVERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP 195

Query: 385 TASIDSATDAILQRIIREEFPGSTVITVAH------RVPTITDSDMFMVLSYGELVEYDL 438
           T+++D  +   ++ +I E     T++ V H      RV   +D   FM +  G+LVEY  
Sbjct: 196 TSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARV---SDYTAFMYM--GKLVEYG- 249

Query: 439 PSKLMETNSAFSK 451
                +T++ F+ 
Sbjct: 250 -----DTDTLFTS 257

Length = 272

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 45/208 (21%), Positives = 87/208 (41%), Gaps = 28/208 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE  ++   Y P     L  ++   ++G  + + G +G+GKTTL+  L+  + P  G++ 
Sbjct: 2   IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60

Query: 281 IDGLDICSMGLKD---LRTKLSIIPQEPTLFRGSVRTNLD----PL------GMYSDNEI 327
           I G D+  +  +    LR ++ ++ Q+  L     RT  +    PL             +
Sbjct: 61  IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL--PDRTVYENVALPLEVRGKKEREIQRRV 118

Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
             A+ +  L+      P  L           S G++Q   + R ++    +L+ DE T +
Sbjct: 119 GAALRQVGLEHKADAFPEQL-----------SGGEQQRVAIARAIVNSPPLLLADEPTGN 167

Query: 388 IDSATDAILQRIIRE-EFPGSTVITVAH 414
           +D      +  +++     G+TVI   H
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATH 195

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 21/210 (10%)

Query: 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 307
           G+ V +VG TG GKT+LISA+   + P +   ++            +R  ++ +PQ   +
Sbjct: 643 GSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVAYVPQVSWI 690

Query: 308 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367
           F  +VR N+     +       A++   L+  +  LP    + + + G N S GQ+Q   
Sbjct: 691 FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750

Query: 368 LGRVLLKRNRILVLDEATASIDSATDA-----ILQRIIREEFPGSTVITVAHRVPTITDS 422
           + R +   + + + D+      SA DA     +  + I++E  G T + V +++  ++  
Sbjct: 751 MARAVYSNSDVYIFDDPL----SALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV 806

Query: 423 DMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           D  +++  G + E     +L      F KL
Sbjct: 807 DRIILVHEGMIKEEGTYEELSNNGPLFQKL 836

Length = 1622

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 55/250 (22%), Positives = 99/250 (39%), Gaps = 30/250 (12%)

Query: 224 EDLKVRYRPNTPLV--LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
             L   +      +  ++ I+    +G  VG +G  G+GK+T +  L  L+ P +G++ +
Sbjct: 24  GSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRV 83

Query: 282 DGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATIS 341
           +G D      +     L  I        G V      L ++ D    +++E  +L   I 
Sbjct: 84  NGKD----PFRRREEYLRSI--------GLVMGQ--KLQLWWDLPALDSLEVLKLIYEIP 129

Query: 342 ------RLPML-----LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
                 RL  L     L+  +       S+GQR    L   LL   ++L LDE T  +D 
Sbjct: 130 DDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189

Query: 391 ATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNS 447
              A ++  ++E      +TV+   H    I    D  +++  G+LV     ++L E   
Sbjct: 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249

Query: 448 AFSKLVAEYR 457
            + +   E +
Sbjct: 250 PYKEFSVELK 259

Length = 325

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 33/222 (14%)

Query: 217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN 276
           S  ++ + DL  RY  +   VLKG++     G  + ++G +GSGK+T +  +  L +P  
Sbjct: 2   SENKLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE 59

Query: 277 GRILIDGLDICSMGLKD-------------LRTKLSIIPQE------PTLFRGSVRTNLD 317
           G I+++G  I  +  KD             LRT+L+++ Q        T+    +   + 
Sbjct: 60  GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 119

Query: 318 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377
            LG+ S  E  E   K   K  I       + +      + S GQ+Q   + R L     
Sbjct: 120 VLGL-SKQEARERAVKYLAKVGID------ERAQGKYPVHLSGGQQQRVSIARALAMEPE 172

Query: 378 ILVLDEATASIDSATDAILQRIIR---EEFPGSTVITVAHRV 416
           +L+ DE T+++D      + RI++   EE  G T++ V H +
Sbjct: 173 VLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEM 212

Length = 257

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 17/204 (8%)

Query: 187 VSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFK 246
           V+  ++ +    P +        +    W     +EL ++   Y  +    +  I  T K
Sbjct: 294 VAFNKLNKLALAPYKAE--FPRPQAFPDWQ---TLELRNVTFAY-QDNGFSVGPINLTIK 347

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 306
            G  + ++G  GSGK+TL   L  L +P++G IL+DG  + +   +D R   S +  +  
Sbjct: 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH 407

Query: 307 LFRGSVRTNLDPLGMYSDNEIWEA-MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365
           LF    +  L P G  ++  + E  +E+ ++   +     L D  +S+     S GQ++ 
Sbjct: 408 LFD---QL-LGPEGKPANPALVEKWLERLKMAHKLE----LEDGRISN--LKLSKGQKKR 457

Query: 366 FCLGRVLLKRNRILVLDEATASID 389
             L   L +   IL+LDE  A  D
Sbjct: 458 LALLLALAEERDILLLDEWAADQD 481

Length = 547

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 23/224 (10%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           + L+ + V +       L  ++ +   G    ++G  G+GKTTL+  +     P+ G +L
Sbjct: 6   LYLDGVSVSF--GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL 63

Query: 281 IDG-LDICSMGLKDL-RTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAM------ 331
            DG  D+  +    + R  +    Q+PT+F   +VR NL+ L +  D  ++ ++      
Sbjct: 64  FDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASLFARLRA 122

Query: 332 -EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
            E+ ++   ++ +   L           S GQ+Q   +G +L +  ++L+LDE  A +  
Sbjct: 123 EERRRIDELLATIG--LGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTD 180

Query: 391 ATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELV 434
           A       +++      +++ V H        DM  V    + V
Sbjct: 181 AETEKTAELLKSLAGKHSILVVEH--------DMGFVREIADKV 216

Length = 249

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG--LDICSMG-LKDLRTKLSIIPQE 304
           G  + +VG +GSGK+T   AL RLVE + G I+ +G  +D  S G L+ LR  +  I Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409

Query: 305 PTLFRGSVRTNLDP---LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW--- 358
           P         +LDP   +G  S  E          KA  +R+  LL+         W   
Sbjct: 410 PY-------ASLDPRQTVG-DSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461

Query: 359 ---SVGQRQLFCLGRVLLKRNRILVLDEATASID 389
              S GQRQ  C+ R L    ++++ DEA +++D
Sbjct: 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALD 495

Length = 623

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 28/212 (13%)

Query: 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDG--LDICSMGLKDLRTK 297
           ++ + + G  +GV G  G+G+T L+ ALF     +  G + I+G  +DI +   + +R  
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAG 337

Query: 298 LSIIPQE-------PTLFRGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRL------ 343
           ++++P++       P L  G   T L  L  +     I  A E   + + I RL      
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNIT-LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTAS 396

Query: 344 PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE- 402
           P L    +S        G +Q   L ++LL   R+L+LDE T  +D      + ++I + 
Sbjct: 397 PFLPIGRLSG-------GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449

Query: 403 EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
              G  +I V+  +  +   SD  +V+  G+L
Sbjct: 450 AQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 44/193 (22%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+++L  ++   T  VL GI    K G  V ++G +GSGKTTL+  +  L +PE G I 
Sbjct: 4   IEVKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61

Query: 281 IDGLDI------------------------CSMGLKDLRTKLSIIPQEPTLFRGSVRTNL 316
           +  + I                         +  L   RT L  I + P + +G  +   
Sbjct: 62  VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEA 121

Query: 317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376
                       E + K  L    +  P  L           S GQ+Q   + R L  R 
Sbjct: 122 TARAR-------ELLAKVGLAGKETSYPRRL-----------SGGQQQRVAIARALAMRP 163

Query: 377 RILVLDEATASID 389
            +++ DE T+++D
Sbjct: 164 EVILFDEPTSALD 176

Length = 250

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 13/198 (6%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I+  +++ RY     LV+ G++   + G   G++G  G+GKTT +  L  L  P+ G I 
Sbjct: 8   IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTL---FRGSVRTNLDPLGMYSDNEIWEAMEKCQLK 337
           + G  + S   +  R ++ ++PQ   L   F  +VR NL   G Y       A       
Sbjct: 66  LCGEPVPSRA-RHARQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAARALVPPL 122

Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID-SATDAIL 396
              ++L    D+ V +     S G ++   L R L+    +LVLDE T  +D  A   + 
Sbjct: 123 LEFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMW 178

Query: 397 QRIIREEFPGSTVITVAH 414
           +R+      G T++   H
Sbjct: 179 ERLRSLLARGKTILLTTH 196

Length = 306

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 29/225 (12%)

Query: 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-----LDICSMGLKD-- 293
           ++     G  +G+VG +GSGK+TL+  L   + P++G           L++  +   +  
Sbjct: 22  VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81

Query: 294 --LRTKLSIIPQEPT--LFR-----GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP 344
             +RT+   + Q P   L        ++   L  +G      I    +    +  I    
Sbjct: 82  RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDP-- 139

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA----ILQRII 400
               + + D    +S G +Q   + R L+ R R++ +DE T  +D +  A    +L+ ++
Sbjct: 140 ----TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195

Query: 401 REEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444
           R+   G  VI V H +      +   +V+  G +VE  L  ++++
Sbjct: 196 RDL--GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 5/201 (2%)

Query: 217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN 276
           S  R+  E L + Y   T  V + +T    +G    ++G  G GK+TL+  L RL+ P +
Sbjct: 4   SVARLRGEQLTLGYGKYT--VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH 61

Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQL 336
           G + +DG  I     K++  ++ ++ Q  T         L   G Y    ++    K   
Sbjct: 62  GHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE 121

Query: 337 KATISRLPMLLDSSVSDEG-ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
           +A    +     + ++D+  +  S GQRQ   +  VL +   I++LDE T  +D +    
Sbjct: 122 EAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQID 181

Query: 396 LQRIIRE--EFPGSTVITVAH 414
           L  ++ E     G T+  V H
Sbjct: 182 LLELLSELNREKGYTLAAVLH 202

Length = 265

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 23/208 (11%)

Query: 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE--- 304
           G  +G++G  G+GKTTL+ A+  L+ P  G + + G              +  +PQ    
Sbjct: 6   GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVPQRHEF 60

Query: 305 ----PTLFRGSV---RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN 357
               P     +V   RT             + A+     +     L  L D  V   GE 
Sbjct: 61  AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV---GLTELADRPV---GE- 113

Query: 358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EFPGSTVITVAHRV 416
            S GQRQ   + R L  R  +L+LDE    +D  T  +L  +  E    G+ ++   H +
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173

Query: 417 PTITDSDMFMVLSYGELVEYDLPSKLME 444
                +   +VL  G ++    P +L +
Sbjct: 174 AQAMATCDRVVLLNGRVIADGTPQQLQD 201

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 53.1 bits (127), Expect = 3e-07
 Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 12/177 (6%)

Query: 244  TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ 303
            TF E      +G  G+GKTT +S L  L+ P +G +L+ G DI    L  +R  L + PQ
Sbjct: 952  TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQ 1010

Query: 304  EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV----SDEGENWS 359
               LF     T  + +  Y+     +   +   +A +    ML D+ +    ++E ++ S
Sbjct: 1011 HNILFHH--LTVAEHILFYA-----QLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLS 1063

Query: 360  VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRV 416
             G ++   +    +   +++VLDE T+ +D  +   +  ++ +   G T+I   H +
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHM 1120

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 64/282 (22%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGR 278
           IE+++L  ++      VLK I+ T +EG  +G++GR+G+GK+ L+  L  +   EP +GR
Sbjct: 1   IEVKNLTKKFDGKE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58

Query: 279 IL---------------------------------IDGLDICSMGLKDLRTKLSIIPQEP 305
           I+                                 +D  ++     + +R +++I+ Q  
Sbjct: 59  IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118

Query: 306 TLFRG------SVRTNLDPLGMYSDNEIWEA---MEKCQLKATISRLPMLLDSSVSDEGE 356
               G      +V   L+ +G      +  A   +E  QL   I+ +   L         
Sbjct: 119 FALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL--------- 169

Query: 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAH 414
             S G++Q   L R L K   + + DE T ++D  T  ++   + E     G +++  +H
Sbjct: 170 --SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227

Query: 415 RVPTITD-SDMFMVLSYGELVEYDLP----SKLMETNSAFSK 451
               I D SD  + L  GE+ E   P    +  ME  S   K
Sbjct: 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEK 269

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 23/165 (13%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKD 293
           +L  +  T  +G  V ++G +G GK+TL+S +   +  +    G + ++   +    L  
Sbjct: 17  LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74

Query: 294 LRTKLSIIPQEPTLF-RGSVRTNL------DPLGMYSDNEIWEAMEKCQLKATISRLPML 346
            + ++ I+ Q+  LF   SV  NL         G    N    A+E+  L     + P  
Sbjct: 75  AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-- 132

Query: 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
                       S GQR    L R LL + + L+LDE  + +D A
Sbjct: 133 ---------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168

Length = 213

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 19/221 (8%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR---LVE--PE 275
           IE E+L + Y       L  I     + +   ++G +G GK+T +  L R   LVE    
Sbjct: 8   IETENLNLFYTDFK--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKI 65

Query: 276 NGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PL--GMYSDNEIWE 329
            G ++ +G +I S    + +LR K+ ++ Q P  F  S+  N+   P   G     ++ E
Sbjct: 66  EGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDE 125

Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
            +E+   K   S L   +   ++    + S GQ+Q  C+ R L     ++++DE T+++D
Sbjct: 126 IVEQSLKK---SALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182

Query: 390 SATDAILQRIIREEFPGSTVITVAHRVPT---ITDSDMFMV 427
             +   ++ +I       T+I V H +     I+D   F +
Sbjct: 183 PISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFL 223

Length = 254

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 44/221 (19%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+EDL  RY  +   VLKG++     G  + ++G +GSGK+T +  +  L +P  G I 
Sbjct: 7   LEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64

Query: 281 IDGLDIC-------------SMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-----P---L 319
           ++G +I                 L+ LRT+L ++ Q   L+  S  T L+     P   L
Sbjct: 65  VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLW--SHMTVLENVIEAPVHVL 122

Query: 320 GMYSDNEIWEAM---EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376
           G+     I  A     K  +       P  L           S GQ+Q   + R L    
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHL-----------SGGQQQRVAIARALAMEP 171

Query: 377 RILVLDEATASIDSATDAILQRIIR---EEFPGSTVITVAH 414
            +++ DE T+++D      + ++++   EE  G T++ V H
Sbjct: 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEE--GRTMVVVTH 210

Length = 256

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 26/167 (15%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS---MGLKDL 294
           L G++ T + G  + VVG +G GK+TL   L  +  P  G +   G D+        K L
Sbjct: 31  LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90

Query: 295 RTKLSIIPQEP--TLF-RGSVRTNL-DPLGMYSD-------NEIWEAMEKCQLKAT-ISR 342
           R K+ I+ Q P  +L  R  V   L +PL + +         +    M K  L+     R
Sbjct: 91  RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR 150

Query: 343 LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
            P +           +S GQRQ   + R L+    ++V DE  +++D
Sbjct: 151 YPHM-----------FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186

Length = 327

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 32/225 (14%)

Query: 211 PPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKE-------------GTRVGVVGRT 257
            P      G  E +           + L G++ ++ +             G   G++G  
Sbjct: 17  SPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPN 76

Query: 258 GSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNL 316
           G+GK+T+   +  +  P+ G+I + G+ + +   +  R ++ ++PQ   L    +VR NL
Sbjct: 77  GAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFTVRENL 135

Query: 317 DPLGMYSDNEIWEAMEKCQLKATIS------RLPMLLDSSVSDEGENWSVGQRQLFCLGR 370
              G Y        M   +++A I       RL    D+ VSD     S G ++   L R
Sbjct: 136 LVFGRYF------GMSTREIEAVIPSLLEFARLESKADARVSD----LSGGMKRRLTLAR 185

Query: 371 VLLKRNRILVLDEATASIDS-ATDAILQRIIREEFPGSTVITVAH 414
            L+   ++L+LDE T  +D  A   I +R+      G T++   H
Sbjct: 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230

Length = 340

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENGR 278
           +E++DL V        +LKG+  T K+G    ++G  GSGK+TL   +      E   G 
Sbjct: 1   LEIKDLHVSVGGKE--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE 58

Query: 279 ILIDGLDICSMGLKDLRTKLSII--PQEPTLFRG 310
           IL  G DI  +   + R +L I    Q P    G
Sbjct: 59  ILFKGEDITDL-PPEERARLGIFLAFQYPPEIPG 91

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 25/212 (11%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRT 296
           L  I+   + G    ++G  G+GK+TL+  L    +P+ G ILIDG ++        L  
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79

Query: 297 KLSIIPQE----PTLFRGSVRTNL------DPLGMYSDNE-IWEAMEKCQLKATISRLPM 345
            ++II QE    P +   +V  NL         G+ +     +EA E  QL+     L +
Sbjct: 80  GVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEARE--QLE----HLGV 130

Query: 346 LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EF 404
            +D       +  S+GQRQ+  + + L +  R++  DE T+S+ +     L R+IRE   
Sbjct: 131 DIDPDT--PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188

Query: 405 PGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
            G  ++ V+HR+  I    D   V   G  V 
Sbjct: 189 EGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220

Length = 501

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 13/184 (7%)

Query: 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 295
           +V+  ++ T   G   G++G  G+GK+T+   L  ++ P+ G+I + G  + S   +  R
Sbjct: 18  VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLAR 76

Query: 296 TKLSIIPQEPTLFRG-SVRTNLDPLGMY---SDNEIWEAMEKCQLKATISRLPMLLDSSV 351
             + ++PQ   L    +VR NL   G Y   S  EI   +         +RL    D  V
Sbjct: 77  VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSL---LEFARLESKADVRV 133

Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS-ATDAILQRIIREEFPGSTVI 410
           +      S G ++   L R L+   ++L+LDE T  +D  A   I +R+      G T++
Sbjct: 134 AL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 189

Query: 411 TVAH 414
              H
Sbjct: 190 LTTH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 22/168 (13%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
            L+ ++ T   G  V V+G +G GKTTL++ +   V P  G I ++G  I   G      
Sbjct: 20  ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74

Query: 297 KLSIIPQEPTLF-----RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351
           +  ++ Q   L        +V   L   G          +EK Q +    ++  L+    
Sbjct: 75  ERGVVFQNEALLPWLNVIDNVAFGLQLRG----------IEKAQRREIAHQMLALVGLEG 124

Query: 352 SDEGENW--SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
           ++    W  S G RQ   + R L    ++L+LDE   ++D+ T   +Q
Sbjct: 125 AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172

Length = 259

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 56/233 (24%), Positives = 109/233 (46%), Gaps = 32/233 (13%)

Query: 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI 300
           ++ T  +G    ++G +G GK+TL+  L    +P  G+I++DG+D+  +     +  +++
Sbjct: 38  VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPYQRPINM 95

Query: 301 IPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML--LDSSVSDEGEN 357
           + Q   LF   +V  N+   G+  D      + K ++ + ++ +  L  +      +   
Sbjct: 96  MFQSYALFPHMTVEQNI-AFGLKQDK-----LPKAEIASRVNEMLGLVHMQEFAKRKPHQ 149

Query: 358 WSVGQRQLFCLGRVLLKRNRILVLDEATASID---------SATDAILQRIIREEFPGST 408
            S GQRQ   L R L KR ++L+LDE   ++D            D IL+R+      G T
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD-ILERV------GVT 202

Query: 409 VITVAH-RVPTITDSDMFMVLSYGELVEYDLPSKLME-TNSAFSKLVAEYRSS 459
            + V H +   +T +    +++ G+ V+   P ++ E   + +S   AE+  S
Sbjct: 203 CVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS---AEFIGS 252

Length = 377

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 32/206 (15%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +++  L   Y    P  L+ I  T + G  + V+G +G GKTTL++ +   V  ++G I 
Sbjct: 2   LQISHLYADY-GGKP-ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN--LDPLGMYSDNEIW----EAMEKC 334
           +DG  +                + P   RG V  N  L P     DN  +      +EK 
Sbjct: 60  LDGKPV----------------EGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM 103

Query: 335 QLKATISRLPMLLDSSVSDEGENW--SVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
           Q      ++   +    +++   W  S GQRQ   + R L    ++L+LDE   ++D+ T
Sbjct: 104 QRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163

Query: 393 ----DAILQRIIREEFPGSTVITVAH 414
                 +L ++ +E   G  V+ + H
Sbjct: 164 REQMQTLLLKLWQET--GKQVLLITH 187

Length = 255

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 33/199 (16%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL------DICSMG 290
            L  IT    +G  + ++G +G+GK++L+  L  L  P +G + I G             
Sbjct: 17  ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76

Query: 291 LKDLRTKLSIIPQE----PTLFRGSVRTNL--DP---LGMYSDNEIWEAME---KCQLKA 338
           +++LR  + ++ Q+    P L   +V+ NL   P   LG+  D  +  A +   + +LK 
Sbjct: 77  IRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP 133

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
              R P+ L           S GQ+Q   + R L+   ++L+ DE TA++D    A +  
Sbjct: 134 YADRFPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182

Query: 399 IIRE-EFPGSTVITVAHRV 416
           IIRE    G T + V H V
Sbjct: 183 IIRELAETGITQVIVTHEV 201

Length = 242

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 53/222 (23%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE +++   + P    VL  I     +G  V ++G +GSGK+TL+  + +L E  +G ++
Sbjct: 2   IEFKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59

Query: 281 IDGLDICSMGLKDLRTKLSIIPQE-----------------------PTLFRGSVRTNLD 317
           +DGL +      D +    +I QE                       P   RG+ +   +
Sbjct: 60  VDGLKV-----NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE 114

Query: 318 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR 377
                      E + K  L       P  L           S GQ+Q   + R L  + +
Sbjct: 115 KQAR-------ELLAKVGLAERAHHYPSEL-----------SGGQQQRVAIARALAVKPK 156

Query: 378 ILVLDEATASIDSATDAILQRIIR---EEFPGSTVITVAHRV 416
           +++ DE T+++D      + ++++   EE  G T++ V H +
Sbjct: 157 LMLFDEPTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEI 196

Length = 240

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 71/259 (27%), Positives = 105/259 (40%), Gaps = 63/259 (24%)

Query: 191 RIRQFMHLPPEPPAIIEETKPPASWPSHGR--IELEDLKVRYRPNTPLVLKGITCTFKEG 248
           RIR      PEP  I  E +PP    S     +E  DL  +   +  L ++G      EG
Sbjct: 318 RIR------PEP--IEFEERPPRD-ESERETLVEYPDLTKKL-GDFSLEVEG--GEIYEG 365

Query: 249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE-PTL 307
             +G+VG  G GKTT    L  +++P+ G +  +              K+S  PQ     
Sbjct: 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPD 412

Query: 308 FRGSVRTNLDPLG-MYSDNEIW-EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365
           + G+V   L  +      +    E ++  QL+        LLD +V D     S G+ Q 
Sbjct: 413 YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER-------LLDKNVKD----LSGGELQ- 460

Query: 366 FCLGRV-----LLKRNRILVLDEATASID-----SATDAILQRIIREEFPGSTVITVAHR 415
               RV     L +   + +LDE +A +D     +   AI +RI  E    +T + V H 
Sbjct: 461 ----RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI-RRIAEER--EATALVVDHD 513

Query: 416 VPTITD--SDMFMVLSYGE 432
           +  I D  SD  MV   GE
Sbjct: 514 IYMI-DYISDRLMVFE-GE 530

Length = 590

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 38/169 (22%)

Query: 233 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 292
           N  L  +GIT  F         GR+G+GKT+LI+A+  L  P+ GRI+++G       L 
Sbjct: 18  NLTLPAQGITAIF---------GRSGAGKTSLINAISGLTRPQKGRIVLNG-----RVLF 63

Query: 293 DLRTKLSIIP---------QEPTLF-RGSVRTNLDPLGM-YSDNEIWEAM-EKCQLKATI 340
           D    + + P         Q+  LF    VR NL   GM  S    ++ +     ++  +
Sbjct: 64  DAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR-YGMAKSMVAQFDKIVALLGIEPLL 122

Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
            R P  L           S G++Q   +GR LL    +L++DE  AS+D
Sbjct: 123 DRYPGSL-----------SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160

Length = 352

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-------- 271
           ++   D+ V Y       L  +     E T    +G +G GK+T +  L R+        
Sbjct: 19  KMRARDVSVFYGEKQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76

Query: 272 VEPENGRILIDGLDI--CSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY------- 322
           V    G+I +DG DI    + + +LR ++ ++ Q+P  F  S+  N+     Y       
Sbjct: 77  VT---GKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENV----AYGPRIHGL 129

Query: 323 --SDNEIWEAMEKCQLKATI-----SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375
             S  E+ E +E    KA +      RL         + G   S GQ+Q  C+ R +   
Sbjct: 130 ARSKAELDEIVETSLRKAGLWEEVKDRL--------HEPGTGLSGGQQQRLCIARAIAVS 181

Query: 376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH------RVPTITDSDMFMVLS 429
             ++++DE  +++D    A ++ +I E     T++ V H      RV   T    F +  
Sbjct: 182 PEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRT--AFFHL-- 237

Query: 430 YGELVEYDLPSKLMETN 446
            G LVE    ++ M TN
Sbjct: 238 -GNLVEVG-DTEKMFTN 252

Length = 267

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 48.6 bits (117), Expect = 5e-06
 Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 65/220 (29%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR- 295
           +LK I+ +F  G ++GV+G  G+GK+TL+            RI+  G+D    G  + R 
Sbjct: 22  ILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMA-GVDKEFEG--EARP 66

Query: 296 ---TKLSIIPQEPTLFRG-SVRTN--------LDPLGMYSDNEIWEAM------------ 331
               K+  +PQEP L    +VR N           L  +  NEI+ A             
Sbjct: 67  APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF--NEIYAAYAEPDADFDALAA 124

Query: 332 EKCQLKATI---------SRLPMLL--------DSSVSDEGENWSVGQRQLFCLGRVLLK 374
           E+ +L+  I         S+L + +        D+ V+      S G+R+   L R+LL+
Sbjct: 125 EQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT----KLSGGERRRVALCRLLLE 180

Query: 375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
           +  +L+LDE T  +D+ + A L++ +  ++PG TV+ V H
Sbjct: 181 KPDMLLLDEPTNHLDAESVAWLEQFLH-DYPG-TVVAVTH 218

Length = 556

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 60/268 (22%), Positives = 97/268 (36%), Gaps = 68/268 (25%)

Query: 192 IRQFM--HLPPE-----PPAIIEETKPP---------ASWPSHGRIELEDLKVRYRPNTP 235
           I +++  +LP E     P  I  E KPP           +P   +    D K+       
Sbjct: 306 INEYLKGYLPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDL-KKTYGDFKLEVEEGE- 363

Query: 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 295
                      +G  +G++G  G GKTT +  L  +++P+ G               +  
Sbjct: 364 ---------IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG--------------SEED 400

Query: 296 TKLSIIPQ--EPTLFRGSVR------TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLL 347
            K+S  PQ   P  + G+V               Y   EI + +           L  LL
Sbjct: 401 LKVSYKPQYISPD-YDGTVEDLLRSAIRSAFGSSYFKTEIVKPL----------NLEDLL 449

Query: 348 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE--EFP 405
           +  V +     S G+ Q   +   L +   + +LDE +A +D     I+ ++IR   E  
Sbjct: 450 ERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENN 505

Query: 406 GSTVITVAHRVPTITD-SDMFMVLSYGE 432
             T + V H +  I   SD  +V   GE
Sbjct: 506 EKTALVVDHDIYMIDYVSDRLIVFE-GE 532

Length = 591

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 19/207 (9%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
            +  I+     G   G++G  G+GKTT    +  L+EP  G I  +G  +     ++++ 
Sbjct: 17  AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72

Query: 297 KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-----SV 351
           ++  +P+E  L+     T  D L   ++    + M K +++    +L   L+        
Sbjct: 73  RIGYLPEERGLYPKM--TVEDQLKYLAE---LKGMPKAEIQK---KLQAWLERLEIVGKK 124

Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVI 410
           + + +  S G +Q       ++    +L+LDE  + +D     +L+  I E    G+T+I
Sbjct: 125 TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATII 184

Query: 411 TVAHRVPTITD-SDMFMVLSYGELVEY 436
             +HR+  + +  D  ++L  G+ V Y
Sbjct: 185 FSSHRMEHVEELCDRLLMLKKGQTVLY 211

Length = 300

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 29/193 (15%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           VL  I+     G  V ++G +GSGKTTL+  +  L    +G I   G D+  +  +D   
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--R 74

Query: 297 KLSIIPQEPTLFRG-SVRTNLD-----------PLGMYSDNEIWEAMEKCQLKATISRLP 344
           K+  + Q   LFR  +V  N+            P       ++ + +E  QL     R P
Sbjct: 75  KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR--- 401
             L           S GQ+Q   L R L    +IL+LDE   ++D+     L+R +R   
Sbjct: 135 AQL-----------SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183

Query: 402 EEFPGSTVITVAH 414
           EE   ++V  V H
Sbjct: 184 EELKFTSVF-VTH 195

Length = 353

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 34/215 (15%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L 294
           L+G+T   + G    + G +G+GK+TL+  +  +  P  G+I   G DI  +  ++   L
Sbjct: 18  LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77

Query: 295 RTKLSIIPQEPTLFRGSVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLD 348
           R ++ +I Q+  L     RT  D + +       S ++I     + ++ A + ++ +L  
Sbjct: 78  RRQIGMIFQDHHLLMD--RTVYDNVAIPLIIAGASGDDI-----RRRVSAALDKVGLL-- 128

Query: 349 SSVSDEGENWSV----GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR--E 402
               D+ +N+ +    G++Q   + R ++ +  +L+ DE T ++D   DA+ + I+R  E
Sbjct: 129 ----DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD---DALSEGILRLFE 181

Query: 403 EFP--GSTVITVAHRVPTITDSDM-FMVLSYGELV 434
           EF   G TV+   H +  I+      + LS G L 
Sbjct: 182 EFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216

Length = 222

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 53/196 (27%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           VL  ++   K G  + ++G  G+GK+TL+  +  LV P+ G I            ++ + 
Sbjct: 19  VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67

Query: 297 KLSIIPQ----EPTL---------FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRL 343
           ++  +PQ    + TL          R   +            +I  A+++ Q    +   
Sbjct: 68  RIGYVPQKLYLDTTLPLTVNRFLRLRPGTK----------KEDILPALKRVQ-AGHLIDA 116

Query: 344 PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID-----SATDAILQR 398
           PM          +  S G+ Q   L R LL R ++LVLDE T  +D     +  D I Q 
Sbjct: 117 PM----------QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ- 165

Query: 399 IIREEFPGSTVITVAH 414
            +R E     V+ V+H
Sbjct: 166 -LRREL-DCAVLMVSH 179

Length = 251

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 48/229 (20%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +   D+  R+   T  VL G+  +   G +V ++G +GSGK+T++  L  L   + G+I 
Sbjct: 1   VRFSDVTKRFGILT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58

Query: 281 IDGLDICSMG-------------LKDLRTKLSIIPQEPTLF------RGSVRTNLDPLGM 321
           ++G  +  M              L+ +R K+ ++ Q   LF             +  LGM
Sbjct: 59  VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM 118

Query: 322 ---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378
               ++    E ++   L      +P  L           S GQ+Q   + R L  R ++
Sbjct: 119 ARAEAEKRAMELLDMVGLADKADHMPAQL-----------SGGQQQRVAIARALAMRPKV 167

Query: 379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV 427
           ++ DE T+++D         ++ E      V+ V  R+ +  D  M +V
Sbjct: 168 MLFDEVTSALDP-------ELVGE------VLNVIRRLASEHDLTMLLV 203

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 48/209 (22%), Positives = 103/209 (49%), Gaps = 17/209 (8%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297
           LK +  T   G    ++G  G+GK+TL+  L  + EP  G I I+ ++   +  K L  +
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK-LAAQ 79

Query: 298 L--SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEA----MEKCQLKATISRLPMLLDSS 350
           L   II QE ++    +V  NL  +G +   ++         + +++A +  L + L   
Sbjct: 80  LGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD 138

Query: 351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI-DSATD---AILQRIIREEFPG 406
           + ++  N S+  +Q+  + + L+   +++++DE T+S+ +   D    I+ ++ +E   G
Sbjct: 139 LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE---G 195

Query: 407 STVITVAHRVPTITD-SDMFMVLSYGELV 434
           + ++ ++H++  I    D + V+  G  V
Sbjct: 196 TAIVYISHKLAEIRRICDRYTVMKDGSSV 224

Length = 510

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 61/270 (22%), Positives = 114/270 (42%), Gaps = 52/270 (19%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--------V 272
           +  E+L V Y     L +K +     +      +G +G GK+T++    RL        V
Sbjct: 11  LRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68

Query: 273 EPENGRILIDGLDICSMGLK--DLRTKLSIIPQEPTLFRGSVRTNL----DPLGMYSDNE 326
           E   G++   G ++ +  +   ++R ++ ++ Q+P  F  S+  N+       G   D +
Sbjct: 69  E---GKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMD 125

Query: 327 IWEAMEKCQLKATISRLPMLLDS---SVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
             E +E+   +A       L D     +   G + S GQ+Q  C+ R +  +  ++++DE
Sbjct: 126 --ELVERSLRQAA------LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE 177

Query: 384 ATASIDSATDAILQRIIREEFPGSTVITVAH------RVPTITDSDMFMVLS-------- 429
             +++D  +   ++ ++ E     T+I V H      RV     SDM    +        
Sbjct: 178 PCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARV-----SDMTAFFNVELTEGGG 232

Query: 430 -YGELVEYDLPSKLMETNSAFSKLVAEYRS 458
            YG LVE+D   K+   NS   +   +Y S
Sbjct: 233 RYGYLVEFDRTEKIF--NSPQQQATRDYVS 260

Length = 264

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 42/222 (18%)

Query: 226 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILID 282
                  +   +LK  +   K G  V V+GR GSG +TL+ AL    E      G I  +
Sbjct: 11  FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70

Query: 283 GLDICSMGLKDLRTKLSIIPQE----PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
           G+       K     +  + +E    PTL   +VR  LD               +C+   
Sbjct: 71  GIPYKEFAEKYPGE-IIYVSEEDVHFPTL---TVRETLD------------FALRCKGNE 114

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD-AILQ 397
            +  +               S G+R+   +   L+ R  +L  D +T  +DS+T   IL+
Sbjct: 115 FVRGI---------------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159

Query: 398 RI--IREEFPGSTVITVAHRVPTITDS-DMFMVLSYGELVEY 436
            I  + +    +T +++      I D  D  +VL  G  + Y
Sbjct: 160 CIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 32/234 (13%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDL 294
            LK I+ + K+G  V ++G +G GKTTL+  +  L     G I   G DI       +D 
Sbjct: 19  ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD- 77

Query: 295 RTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD 353
                I+ Q   LF   +V  N+   G+ +       M + ++   ++ L  L+   +  
Sbjct: 78  ---YGIVFQSYALFPNLTVADNI-AYGLKN-----RGMGRAEVAERVAELLDLVG--LPG 126

Query: 354 EGENW----SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP---- 405
               +    S GQ+Q   L R L     +L+LDE      SA DA ++  +R E      
Sbjct: 127 SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL----SALDARVREHLRTEIRQLQR 182

Query: 406 --GSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
             G T I V H +   ++ +D  +V+++G + +   P ++       +  VA++
Sbjct: 183 RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR--HPATPFVADF 234

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 55/207 (26%)

Query: 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---------- 289
           G++ T   G  V + G  G+GKT+L+  L  L  P+ G +L  G  I             
Sbjct: 19  GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78

Query: 290 -----GLKDLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYSDNEIWEAMEKCQLK--- 337
                G+K   T       E          NL       G   D  +WEA+ +  L    
Sbjct: 79  LGHQPGIKTELT-----ALE----------NLRFYQRLHGPGDDEALWEALAQVGLAGFE 123

Query: 338 -ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
              + +L               S GQ++   L R+ L R  + +LDE   +ID    A L
Sbjct: 124 DVPVRQL---------------SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL 168

Query: 397 QRIIRE--EFPGSTVITVAHRVPTITD 421
           + ++ +  E  G  ++T    +P  +D
Sbjct: 169 EALLAQHAEQGGMVILTTHQDLPVASD 195

Length = 204

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 21/204 (10%)

Query: 228 VRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287
           V +      +   I+ T   G    ++G +G GKTTL+  +   + P++G IL DG +I 
Sbjct: 13  VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP 72

Query: 288 SM---GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP 344
           +M    L  +R ++S++ Q   LF     T+++      DN  +   E  QL A +    
Sbjct: 73  AMSRSRLYTVRKRMSMLFQSGALF-----TDMNVF----DNVAYPLREHTQLPAPLLHST 123

Query: 345 MLLD-SSVSDEG------ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
           +++   +V   G         S G  +   L R +     +++ DE     D  T  +L 
Sbjct: 124 VMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLV 183

Query: 398 RIIRE--EFPGSTVITVAHRVPTI 419
           ++I E     G T + V+H VP +
Sbjct: 184 KLISELNSALGVTCVVVSHDVPEV 207

Length = 269

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 2/168 (1%)

Query: 4   VSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLS 63
           +++D+S +   L   + L   +   V     VM    W + +V +  + +   +      
Sbjct: 104 LTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAK 163

Query: 64  SARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAA 123
             R+L R      A   + A E+  G+ +++AF   +   E Y K ++   +        
Sbjct: 164 KLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAIT 223

Query: 124 TEWLVLRIEALQNLIILTAALLIVLL--PGKHLPGFVGLSLSYALTLS 169
                   + +  L    A      L   G    G V   LS  L LS
Sbjct: 224 AGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLS 271

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 34/186 (18%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI----DGLDICSMG-- 290
           VL+ ++ +   G  V + G +GSGK+TL+ +L+    P+ G+IL+    + +D+ +    
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 291 -LKDLRTK--------LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKAT-- 339
            + ++R          L +IP+   L    V   L   G+          E  + KA   
Sbjct: 86  EVLEVRRTTIGYVSQFLRVIPRVSAL--DVVAEPLLARGV--------PREVARAKAADL 135

Query: 340 ISRL---PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
           ++RL     L   + +     +S G++Q   + R  +    IL+LDE TAS+D+   A++
Sbjct: 136 LTRLNLPERLWSLAPA----TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191

Query: 397 QRIIRE 402
             +IRE
Sbjct: 192 VELIRE 197

Length = 235

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 29/230 (12%)

Query: 200 PEPPAIIEETKPPASWPSHGRIELEDLKVRYR------PNTPLVLKGITCTFKEGTRVGV 253
            E  +  E  +     P  G +E +D  +++       PN  ++++ ++     G  + +
Sbjct: 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLI 483

Query: 254 VGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR 313
            G  G GK++L   L  L     GR+            K  + KL  +PQ P +  G++R
Sbjct: 484 CGPNGCGKSSLFRILGELWPVYGGRLT-----------KPAKGKLFYVPQRPYMTLGTLR 532

Query: 314 TNL----DPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365
             +        M     SD ++ + ++  QL   + R      S+V D  +  S G++Q 
Sbjct: 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGW--SAVQDWMDVLSGGEKQR 590

Query: 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR 415
             + R+   + +  +LDE T+++    +  + R+ RE   G T+ +V+HR
Sbjct: 591 IAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHR 638

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 22/195 (11%)

Query: 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR 295
            +L+ I+     G  + + G  G+GKTTL+  +  L+ PE G IL +   I     KDL 
Sbjct: 15  PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI----KKDLC 70

Query: 296 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE------AMEKCQLKATISRLPMLLDS 349
           T      Q+   F G  R+ ++P     +N +++      A+   +L   +  L  L+D 
Sbjct: 71  TY-----QKQLCFVGH-RSGINPYLTLRENCLYDIHFSPGAVGITEL-CRLFSLEHLIDY 123

Query: 350 SVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS-ATDAILQRIIREEFPGST 408
                    S GQ++   L R+ + + ++ +LDE   ++D  +   I+ +I      G  
Sbjct: 124 PCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179

Query: 409 VITVAHRVPTITDSD 423
           V+  +H+   +  +D
Sbjct: 180 VLLTSHQDLPLNKAD 194

Length = 200

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 40/221 (18%)

Query: 216 PSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-- 273
           P H   E+E +KV Y     L L  +         +  +G +G GK+TL+    R+ +  
Sbjct: 16  PDHSVFEVEGVKVFY--GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73

Query: 274 ---PENGRILIDGLDICSMGLKD--LRTKLSIIPQEPTLFRGSV-------------RTN 315
                 GR+L    +I    +    LR ++ ++ Q P  F  S+             + N
Sbjct: 74  PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133

Query: 316 LDPLGMYSDNE--IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL 373
           LD L   S     IWE + K +LK                +G   S GQ+Q  C+ R + 
Sbjct: 134 LDELVEDSLRRAAIWEEV-KDKLKE---------------KGTALSGGQQQRLCIARAIA 177

Query: 374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
            +  +L++DE  +++D  +   ++ +  E     T+I V H
Sbjct: 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTH 218

Length = 274

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 24/213 (11%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I + D+ V +R N    L+  + T   G+   +VG  GSGK+TL  AL   V   +G+I 
Sbjct: 7   IVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS 65

Query: 281 IDGLDICSMGLKDLRTKL-SIIPQE-------PTLFRGSVRTNLDPLGMYSDN---EIWE 329
           I G        + L+  L + +PQ        P L    V      +G Y         +
Sbjct: 66  ILGQPT----RQALQKNLVAYVPQSEEVDWSFPVLVEDVVM-----MGRYGHMGWLRRAK 116

Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
             ++  + A ++R+ M ++      GE  S GQ++   L R + ++ ++++LDE    +D
Sbjct: 117 KRDRQIVTAALARVDM-VEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174

Query: 390 SATDAILQRIIRE-EFPGSTVITVAHRVPTITD 421
             T+A +  ++RE    G T++   H + ++T+
Sbjct: 175 VKTEARIISLLRELRDEGKTMLVSTHNLGSVTE 207

Length = 272

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 56/240 (23%), Positives = 107/240 (44%), Gaps = 24/240 (10%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I+++DL   Y  NT   ++GI+          ++G +G GK+T I  L R+ E E G + 
Sbjct: 8   IKVKDLSFYY--NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPVK 64

Query: 281 IDG-LDICSMGLKD-------LRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIW 328
           ++G +D     + D       LR ++ ++ Q P  F  S+  N    +         ++ 
Sbjct: 65  VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           E +E   LK   + L   +   ++      S GQ+Q  C+ R L  + ++L++DE  +++
Sbjct: 125 EIVESA-LKG--AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181

Query: 389 DSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS-----YGELVEYDLPSKL 442
           D      ++ +I       T+  V H +   T  SD     S      G++VE+ + +++
Sbjct: 182 DPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241

Length = 259

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)

Query: 253 VVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP---QEPTLFR 309
           ++G  G+GKTT++  +     P+ G +L  G D+   GL + +   + I    Q+PT+F 
Sbjct: 33  IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL--TGLPEHQIARAGIGRKFQKPTVFE 90

Query: 310 G-SVRTNLDPLGMYSDNEIWEAM-------EKCQLKATISRLPMLLDSSVSDEGENWSVG 361
             +V  NL+ L +  D  ++ ++       EK +++  +  +   L           S G
Sbjct: 91  NLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETIG--LADEADRLAGLLSHG 147

Query: 362 QRQLFCLGRVLLKRNRILVLDEATASIDSA----TDAILQRIIREEFPGSTVITVAHRVP 417
           Q+Q   +G +L++  ++L+LDE  A +       T  +L+ +  +     +V+ V H   
Sbjct: 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKH----SVVVVEH--- 200

Query: 418 TITDSDMFMVLSYGELV 434
                DM  V S  + V
Sbjct: 201 -----DMEFVRSIADKV 212

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 69/252 (27%), Positives = 113/252 (44%), Gaps = 49/252 (19%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           + L+++  R+  NT  V+  +  T K+GT V ++G +G GKTT++  +  L +P  G+I 
Sbjct: 7   VVLKNITKRFGSNT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF 64

Query: 281 IDGLDICSMGLKDLRTKLSI-------IPQEPTLF-RGSVRTN----LDPLGMYSD---N 325
           IDG D+         T  SI       + Q   LF   S+  N    L  LG+  +    
Sbjct: 65  IDGEDV---------THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ 115

Query: 326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
            + EA+E   L     R             +  S GQ+Q   L R L+ + ++L+ DE  
Sbjct: 116 RVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARALILKPKVLLFDEPL 164

Query: 386 ASIDSATDAILQRIIRE---EFPGSTVIT---VAH-RVPTITDSDMFMVLSYGELVEYDL 438
           +++    DA L+R +RE   E      IT   V H +      SD  +V++ G++++   
Sbjct: 165 SNL----DANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220

Query: 439 PSKLMET-NSAF 449
           P +L     S F
Sbjct: 221 PQELYRQPASRF 232

Length = 351

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 18/186 (9%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297
           LKG+  T ++G  + ++G +G GK+TL++ +  L +P +G ++++G  I   G   +   
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57

Query: 298 LSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML--LDSSVSDE 354
             ++ Q  +L    +VR N+      + + +   + K + +A +     L  L  +    
Sbjct: 58  --VVFQNYSLLPWLTVRENI----ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111

Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ----RIIREEFPGSTVI 410
               S G +Q   + R L  R ++L+LDE   ++D+ T   LQ    +I  E     TV+
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH--RVTVL 169

Query: 411 TVAHRV 416
            V H V
Sbjct: 170 MVTHDV 175

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 64/257 (24%), Positives = 116/257 (45%), Gaps = 44/257 (17%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPE-- 275
           RI+++DL + Y   +   ++ +    +  +    +G +G GK+T++  L R+  V P   
Sbjct: 4   RIDVKDLNIYY--GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61

Query: 276 -NGRILIDGLDICSMGLK--DLRTKLSIIPQEPTLF-----RGSVRTNLDPLGMYSDNEI 327
             G +L+DG D+   G+    +R  + ++ Q P  F     R +V   L   G+ +  ++
Sbjct: 62  VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121

Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDE----GENWSVGQRQLFCLGRVLLKRNRILVLDE 383
            E +EK    A        L + V D     G   S GQ+Q  C+ R +     +L++DE
Sbjct: 122 DELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174

Query: 384 ATASIDS-ATDAILQRI--IREEFPGSTVITVAH---RVPTITDSDMFMVLSY----GEL 433
             +++D  +T AI   I  +++++   T++ V H   +   ++D   F  L      G L
Sbjct: 175 PCSALDPISTLAIEDLINELKQDY---TIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231

Query: 434 VEYDLPSKLMETNSAFS 450
           VE D      +T   FS
Sbjct: 232 VEID------DTEKIFS 242

Length = 258

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 35/217 (16%)

Query: 240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE----NGRILIDGLDICSMGLKDLR 295
            +  + K G  + +VG +GSGK+    A+  L+ P     +G IL+DG  +  + ++   
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62

Query: 296 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML-----LDSS 350
             ++ I Q P       RT  +PL    +     A+E  +    +S+         L++ 
Sbjct: 63  -HIATIMQNP-------RTAFNPLFTMGN----HAIETLRSLGKLSKQARALILEALEAV 110

Query: 351 VSDEGEN--------WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA-ILQ--RI 399
              + E          S G  Q   +   LL     L+ DE T  +D    A +L+  R 
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170

Query: 400 IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
           +R+ F G+ ++ + H +  +   +D   V+  G +VE
Sbjct: 171 LRQLF-GTGILLITHDLGVVARIADEVAVMDDGRIVE 206

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 27/217 (12%)

Query: 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-----LDICSMGLKD----LRTKL 298
           G  +G+VG +GSGKTTL+  +   + P+ G +          D+ +M   +    LRT+ 
Sbjct: 32  GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91

Query: 299 SIIPQEPT--LFR-----GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351
             + Q P   L       G++   L  +G      I    +    +  I          +
Sbjct: 92  GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL------DRI 145

Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR---EEFPGST 408
            D    +S G +Q   + R L+ R R++ +DE T  +D +  A L  ++R    E  G  
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLA 204

Query: 409 VITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME 444
           V+ V H +      +D  MV+  G++VE  L  ++++
Sbjct: 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241

Length = 258

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 59/244 (24%)

Query: 231 RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG------------- 277
           +     V + ++ + + G  + +VG +GSGK+    AL RL+E   G             
Sbjct: 26  QQKIAAV-RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84

Query: 278 RILIDGLDICSMGLKDLR-TKLSIIPQEPTLFRGSVRTNLDPL---------------GM 321
           R +I+  +  +  ++ +R   +++I QEP        T+L+P+               G 
Sbjct: 85  RQVIELSEQSAAQMRHVRGADMAMIFQEPM-------TSLNPVFTVGEQIAESIRLHQGA 137

Query: 322 YSDNEIWEAMEKCQL------KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR 375
             +  + EA            +  +SR P  L           S G RQ   +   L  R
Sbjct: 138 SREEAMVEAKRMLDQVRIPEAQTILSRYPHQL-----------SGGMRQRVMIAMALSCR 186

Query: 376 NRILVLDEATASIDSATDA-ILQ--RIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYG 431
             +L+ DE T ++D    A ILQ  +++++E     VI + H +  + + +D  +V+  G
Sbjct: 187 PAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIADRVLVMYQG 245

Query: 432 ELVE 435
           E VE
Sbjct: 246 EAVE 249

Length = 623

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 8/187 (4%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRT 296
           L  +    +  +   ++G  G+GK+TL+  LF + + ++G IL  G +I     K+ L  
Sbjct: 14  LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73

Query: 297 KLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKC--QLKATISRLPMLLDSSVSD 353
            +S++ QE  L    SV  N+  LG Y    ++   +K     KA    L + +D     
Sbjct: 74  GISMVHQELNLVLQRSVMDNM-WLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP--RA 130

Query: 354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EFPGSTVITV 412
           +    SV Q Q+  + +      +I+++DE T+S+       L  IIR+ +  G  ++ +
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190

Query: 413 AHRVPTI 419
           +H++  I
Sbjct: 191 SHKMEEI 197

Length = 491

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 58/189 (30%)

Query: 248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL 307
           G  + +VG  GSGKTTL  AL R + P  G ++    +     + D    + +  ++ + 
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61

Query: 308 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367
                                                                  R    
Sbjct: 62  SGELR-------------------------------------------------LRLAL- 71

Query: 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIR-------EEFPGSTVITVAHRVPTIT 420
                  +  +L+LDE T+ +D+  +A+L  +         +     TVI   +    + 
Sbjct: 72  -ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130

Query: 421 DSDMFMVLS 429
            + +     
Sbjct: 131 PALLRRRFD 139

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 45/206 (21%)

Query: 236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDI---CSMGL 291
           ++L  I      G+R+G++GR G+GK+TLI  L   + P +G I L  G+ +       L
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385

Query: 292 KDLRTKLS-------IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP 344
           + LR   S       + PQE       +R  L   G   D                    
Sbjct: 386 EFLRADESPLQHLARLAPQEL---EQKLRDYLGGFGFQGDK------------------- 423

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID-SATDAILQRIIREE 403
                 V++E   +S G++    L  ++ +R  +L+LDE T  +D     A+ + +I  +
Sbjct: 424 ------VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI--D 475

Query: 404 FPGSTVITVAHRVPTI--TDSDMFMV 427
           F G+ V+ V+H    +  T  D+++V
Sbjct: 476 FEGALVV-VSHDRHLLRSTTDDLYLV 500

Length = 638

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 37/228 (16%)

Query: 223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENGRIL 280
           LE   VR R     VL+ +    K G  V VVG++G+GKTTL+  +   +    E     
Sbjct: 384 LESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRP 443

Query: 281 IDGLDICSMGLKDLRTKLSIIPQ--EPTLFRGSVRTNL--DPLGMYSDNEIWE---AMEK 333
             G            T  ++IP   EP     ++  +L      + +  EI       + 
Sbjct: 444 DSG-----KVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDA 498

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393
              +   S L               S GQ++   L ++L +R  +L++DE  A +D  T 
Sbjct: 499 VLYRRKFSEL---------------STGQKERAKLAKLLAERPNVLLIDEFAAHLDELTA 543

Query: 394 AILQRIIRE---EFPGSTVITVAHRVPTITDS---DMFMVLSYGELVE 435
             + R I E   E  G T+I V HR P + ++   D  +++ YG++  
Sbjct: 544 VRVARKISELAREA-GITLIVVTHR-PEVGNALRPDTLILVGYGKVPV 589

Length = 593

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 36/176 (20%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 246 KEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSMGLKDL--RTKL 298
           ++    G +G +G GK+T++ +L R+ +        G +   G D+   G+  +  R  +
Sbjct: 32  RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91

Query: 299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW 358
            ++ Q+P  F  S+  N+   G+  +    +  ++ +     + L   +   +   G + 
Sbjct: 92  GMVFQQPNPFSMSIFDNV-AFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSL 150

Query: 359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
           S GQ+Q  C+ R +     +L+LDE  +++D      ++ ++ E     T+  V H
Sbjct: 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTH 206

Length = 261

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 22/173 (12%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---D 293
           VL  ++ +  EG  + +VG +GSGK+TL+  L  L  P +G ++ +G  +  +      +
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 294 LRT-KLSIIPQEPTLFRGSVRTNLDPLGM---YSDNEIWEAMEKCQLKATISRLPML--- 346
           LR  KL  I Q   L      T L+ + M       +  E   +         L ML   
Sbjct: 84  LRNQKLGFIYQFHHLLPDF--TALENVAMPLLIGKKKPAEINSRA--------LEMLAAV 133

Query: 347 -LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQ 397
            L+   +      S G+RQ   + R L+   R+++ DE T ++D+   D+I Q
Sbjct: 134 GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186

Length = 233

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 19/211 (9%)

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDL 294
           LK ++   K G  + V+G +G+GKTTL++AL          +G +L++G+    +  K++
Sbjct: 41  LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM---PIDAKEM 97

Query: 295 RTKLSIIPQEPTLFRGS--VRTNLDPLGMYSDNEIWEAMEKCQ-LKATISRLPML--LDS 349
           R  +S   Q+  LF  +  VR +L               EK + +   +  L +    ++
Sbjct: 98  R-AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156

Query: 350 SVSDEGENW--SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EFPG 406
            +   G     S G+R+       LL    +L  DE T+ +DS     + ++++     G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216

Query: 407 STVITVAHRVPTITDSDMF---MVLSYGELV 434
            T+I   H+ P+    ++F   ++++ G + 
Sbjct: 217 KTIICTIHQ-PSSELFELFDKIILMAEGRVA 246

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 34/242 (14%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           ++L D+ V  R      L  ++   + G  + +VG  G+GK+TL++ +  L+ P +G I 
Sbjct: 1   MQLNDVAVSTR------LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQ 53

Query: 281 IDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLD---PLGMYSDNEIWEAMEKC 334
             G  + +    +L   R  LS   Q+   F   V   L    P    ++       E  
Sbjct: 54  FAGQPLEAWSAAELARHRAYLS--QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVA 111

Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK-------RNRILVLDEATAS 387
           +       L   L  SV+      S G+ Q   L  V+L+         ++L+LDE   S
Sbjct: 112 EA----LGLDDKLGRSVN----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNS 163

Query: 388 IDSATDAILQRIIREEFP--GSTVITVAHRVP-TITDSDMFMVLSYGELVEYDLPSKLME 444
           +D A  A L R++  E    G  V+  +H +  T+  +D   +L  G+L+      +++ 
Sbjct: 164 LDVAQQAALDRLLS-ELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222

Query: 445 TN 446
             
Sbjct: 223 PE 224

Length = 248

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 41.3 bits (98), Expect = 8e-04
 Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 41/176 (23%)

Query: 251 VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI--------CSMGL----KDLRTKL 298
           +G+ G  G+G+T L  ALF      +G IL+DG  +           G+    +D R   
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPED-RKSE 346

Query: 299 SIIPQEPTLFRGSVRTNL--------DPLGMYSDNE----IWEAMEKCQLKATISRLPML 346
            ++         S+  N+           G+    +        + + ++K         
Sbjct: 347 GLVLDM------SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-------- 392

Query: 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE 402
              S        S G +Q   L R L    ++L+LDE T  ID    A + R+IRE
Sbjct: 393 --PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446

Length = 500

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 40.9 bits (97), Expect = 0.001
 Identities = 63/245 (25%), Positives = 93/245 (37%), Gaps = 65/245 (26%)

Query: 222 ELEDLKV-RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI- 279
           ELE+  V RY  N    L G+    KEG   G++G  G GKTT +  L   + P  G   
Sbjct: 74  ELEEEPVHRYGVNG-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131

Query: 280 ----------------LIDGLDICSMGLKDLRTKLSIIPQE----PTLFRGSVR---TNL 316
                           L +        L +   K+   PQ     P +F+G VR     +
Sbjct: 132 EEPSWDEVLKRFRGTELQNYFK----KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV 187

Query: 317 DPLGMYSDNEIWEAMEKCQLKATISRLPM--LLDSSVSDEGENWSVGQRQLFCLGRVLLK 374
           D  G   +               + RL +  +LD  +S      S G+ Q   +   LL+
Sbjct: 188 DERGKLDE--------------VVERLGLENILDRDIS----ELSGGELQRVAIAAALLR 229

Query: 375 RNRILVLDEATASIDSATDAILQRI-----IREEFPGSTVITVAHRVPTITD--SDMFMV 427
                  DE T+ +D     I QR+     IRE   G  V+ V H +  + D  +D  + 
Sbjct: 230 DADFYFFDEPTSYLD-----IRQRLNVARLIRELAEGKYVLVVEHDL-AVLDYLAD-NVH 282

Query: 428 LSYGE 432
           ++YGE
Sbjct: 283 IAYGE 287

Length = 590

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 54/250 (21%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +EL  +   +      V+  +  T   G  + ++G +G GKTT++  +     P++GRI+
Sbjct: 15  VELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEP----TLFRG-------SVRTNLD-PLGM--YSDNE 326
           +DG DI            + +P E     T+F+        +V  N+   L M      E
Sbjct: 73  LDGQDI------------THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE 120

Query: 327 I----WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382
           I     EA+   QL+    R P  L           S GQ+Q   + R ++ + ++L+LD
Sbjct: 121 ITPRVMEALRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNKPKVLLLD 169

Query: 383 EATASIDSATDAILQRIIREEFP------GSTVITVAH-RVPTITDSDMFMVLSYGELVE 435
           E+     SA D  L++ ++ E        G T + V H +   +T SD  +V+  G + +
Sbjct: 170 ESL----SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225

Query: 436 YDLPSKLMET 445
              P ++ E 
Sbjct: 226 DGTPREIYEE 235

Length = 375

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 43/201 (21%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---GLKD 293
           +L G+    K G  + ++G +GSGK+TL++ L  L +  +G + + G  +  M       
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84

Query: 294 LRTK--------LSIIP--------QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLK 337
           LR K          +IP        + P L RG            S N     +E+  L 
Sbjct: 85  LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQ-------SRNGAKALLEQLGLG 137

Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAI- 395
             +  LP  L           S G++Q   L R    R  +L  DE T ++D  T D I 
Sbjct: 138 KRLDHLPAQL-----------SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186

Query: 396 --LQRIIREEFPGSTVITVAH 414
             L  + RE   G+T+I V H
Sbjct: 187 DLLFSLNREH--GTTLILVTH 205

Length = 228

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 44/235 (18%)

Query: 222 ELEDLKV-RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTT--------LISALFRLV 272
           ELED  V RY PN+   L  +    +EG  +G+VG  G GK+T        L   L +  
Sbjct: 1   ELEDEPVHRYGPNS-FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58

Query: 273 EPENGRILID-----GLDICSMGLKDLRTKLSIIPQE----PTLFRGSVRTNL---DPLG 320
           +P +   ++D      L      L +   K+ + PQ     P   +G V   L   D  G
Sbjct: 59  DPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERG 118

Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380
               +E+ + +E          L  +LD ++       S G+ Q   +   L +      
Sbjct: 119 KL--DELVDQLE----------LRHVLDRNIDQ----LSGGELQRVAIAAALARDADFYF 162

Query: 381 LDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGE 432
            DE ++ +D        R+IRE     + V+ V H +  + D  SD    L YGE
Sbjct: 163 FDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCL-YGE 215

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 52/224 (23%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN--GRILIDGLDICSMGLKDL 294
           +L G+T     G  + V+G +GSGK+TL++AL   ++  N  G IL +            
Sbjct: 83  ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRK--------- 133

Query: 295 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP---------M 345
                  P +  L R    T  D L  Y    + E +  C L     RLP         +
Sbjct: 134 -------PTKQILKRTGFVTQDDIL--YPHLTVRETLVFCSL----LRLPKSLTKQEKIL 180

Query: 346 LLDSSVSDEG----ENW----------SVGQRQLFCLGRVLLKRNRILVLDEATASIDS- 390
           + +S +S+ G    EN           S G+R+   +   +L    +L+LDE T+ +D+ 
Sbjct: 181 VAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240

Query: 391 ATDAILQRIIREEFPGSTVITVAHRVPTITDSDMF---MVLSYG 431
           A   ++  +      G T++T  H+ P+     MF   +VLS G
Sbjct: 241 AAYRLVLTLGSLAQKGKTIVTSMHQ-PSSRVYQMFDSVLVLSEG 283

Length = 659

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLS 299
           I+   + G  +G+ G  G+G+T L   L+ L     GRI+++G +I ++     L   L 
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341

Query: 300 IIPQEPTLFRGSVRTNLD-PLG------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVS 352
            +P++    R S    LD PL        ++    W  ++  +  A + R    L+   +
Sbjct: 342 YLPED----RQSSGLYLDAPLAWNVCALTHNRRGFW--IKPARENAVLERYRRALNIKFN 395

Query: 353 DEGE---NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR 401
              +     S G +Q   + + L    ++L++DE T  +D +    + ++IR
Sbjct: 396 HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIR 447

Length = 510

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 45/197 (22%)

Query: 244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-------------------L 284
             ++  RV +VGR G+GK+TL+  L   V  ++GRI+ +                     
Sbjct: 25  HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVY 84

Query: 285 DICSMGLKDLRTKLSII----------PQEPTLFR-GSVRTNLDPLGMYS-DNEIWEAME 332
           D  + G+++    L             P E  L     ++  LD   ++  +N I E + 
Sbjct: 85  DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLA 144

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
           +  L           D+++S     W    R+   LGR L+    +L+LDE T  +D  T
Sbjct: 145 QLGLDP---------DAALSSLSGGW---LRKA-ALGRALVSNPDVLLLDEPTNHLDIET 191

Query: 393 DAILQRIIREEFPGSTV 409
              L+  ++  F GS +
Sbjct: 192 IEWLEGFLK-TFQGSII 207

Length = 635

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 27/216 (12%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---G 277
           I +E L   +  +    L  +      G  V ++G +GSGK+TL+  L  L+  +     
Sbjct: 5   IRVEKLAKTFNQHQ--ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS 62

Query: 278 RILIDGLDICSMG-----LKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEA- 330
            I + G  +   G     ++  R     I Q+  L  R SV  N+  +G       W   
Sbjct: 63  HIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENV-LIGALGSTPFWRTC 121

Query: 331 ------MEKCQLKATISRLPM--LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382
                  +K +    ++R+ M       VS      S GQ+Q   + R L+++ ++++ D
Sbjct: 122 FSWFTREQKQRALQALTRVGMVHFAHQRVS----TLSGGQQQRVAIARALMQQAKVILAD 177

Query: 383 EATASIDSATDAILQRIIRE--EFPGSTVITVAHRV 416
           E  AS+D  +  I+   +R+  +  G TV+   H+V
Sbjct: 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV 213

Length = 262

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 38/236 (16%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----E 275
           +IEL ++ ++     PLV  G++ T + G  + +VG +GSGK+   +A   ++       
Sbjct: 4   QIELRNIALQ--AAQPLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60

Query: 276 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQ 335
            GR+L+DG  +    L+    K++ I Q P       R+  +PL     +    A E C 
Sbjct: 61  AGRVLLDGKPVAPCALRG--RKIATIMQNP-------RSAFNPLHTMHTH----ARETCL 107

Query: 336 ---LKATISRLPMLLDSSVSDEGE--------NWSVGQRQLFCLGRVLLKRNRILVLDEA 384
                A  + L   L++   +             S G  Q   +   LL     ++ DE 
Sbjct: 108 ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEP 167

Query: 385 TASIDSATDA----ILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE 435
           T  +D    A    +L+ I+++   G  ++ V H +  +   +D   V+S+G +VE
Sbjct: 168 TTDLDVVAQARILDLLESIVQKRALG--MLLVTHDMGVVARLADDVAVMSHGRIVE 221

Length = 254

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 60/244 (24%), Positives = 110/244 (45%), Gaps = 41/244 (16%)

Query: 221 IELEDLKVRYRPNTPLV--LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           ++++DL+V +      V  +  +  + + G  +G+VG +GSGK+    AL  L+   NGR
Sbjct: 13  LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA-NGR 71

Query: 279 I----LIDGLDICSMGLKDLR----TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEA 330
           I      +G +I ++  K+L      ++S+I Q+P        T+L+P     +    + 
Sbjct: 72  IGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM-------TSLNPYMRVGE----QL 120

Query: 331 MEKCQLKATISRLPM------LLDSSVSDEGEN--------WSVGQRQLFCLGRVLLKRN 376
           ME   L   +S+         +LD+    E           +S G RQ   +   LL R 
Sbjct: 121 MEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRP 180

Query: 377 RILVLDEATASIDSATDAILQRIIRE---EFPGSTVITVAHRVPTITDS-DMFMVLSYGE 432
           ++L+ DE T ++D    A +  ++ E   EF  + +I + H +  +    D  +V+  G 
Sbjct: 181 KLLIADEPTTALDVTVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKVLVMYAGR 239

Query: 433 LVEY 436
            +EY
Sbjct: 240 TMEY 243

Length = 330

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 44/215 (20%)

Query: 217 SHGRIELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--- 271
           +   + +E+L V +R       V+  ++   + G  + +VG +GSGK+    ++ RL   
Sbjct: 2   TQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPS 61

Query: 272 --VEPENGRILIDGLDICSMGLKDLR----TKLSIIPQEPTLFRGSVRTNLDPL------ 319
             V   +G I   G  +     + LR     K+++I QEP +       +L+PL      
Sbjct: 62  PPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPLHTLEKQ 114

Query: 320 ---------GMYSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367
                    GM  +    EI   +++  ++    RL        +D     S G+RQ   
Sbjct: 115 LYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRL--------TDYPHQLSGGERQRVM 166

Query: 368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIRE 402
           +   LL R  +L+ DE T ++D +  A + +++RE
Sbjct: 167 IAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201

Length = 529

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF--RLVEPENGRILIDGLDICSM 289
           +LKG+  T K+G    ++G  GSGK+TL   +      E  +G IL  G D+  +
Sbjct: 15  ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 56/213 (26%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE E+L   +     L++  ++     G  VGV+G  G+GK+TL   +    +P++G I 
Sbjct: 323 IEAENLSKGF--GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAM----EKCQL 336
           I G  +          KL+ + Q         R  LDP     +  +WE +    +  QL
Sbjct: 381 I-GETV----------KLAYVDQS--------RDALDP-----NKTVWEEISGGLDIIQL 416

Query: 337 -------KATISRLPMLLDSSVSDEGENWSV---GQRQLFCLGRVLLKRNRILVLDEATA 386
                  +A + R     +   SD+ +       G+R    L + L     +L+LDE T 
Sbjct: 417 GKREVPSRAYVGR----FNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472

Query: 387 SIDSAT-----DAILQRIIREEFPGSTVITVAH 414
            +D  T     +A+L      EF G  V+ ++H
Sbjct: 473 DLDVETLRALEEALL------EFAGCAVV-ISH 498

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 63/256 (24%), Positives = 97/256 (37%), Gaps = 54/256 (21%)

Query: 222 ELEDLKV-RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI- 279
           ELE+  V RY  N    L  +  T + G  VG++G  G GK+T +  L   ++P  GR  
Sbjct: 75  ELEEEVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE 132

Query: 280 -------LIDGLDICSM-----GLKDLRTKLSIIPQE----PTLFRGSVR---TNLDPLG 320
                  +I       +      L +   +    PQ     P + +G V      +D  G
Sbjct: 133 DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERG 192

Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV 380
            +      E +E+  L+  + R           +    S G+ Q   +   LL+   +  
Sbjct: 193 KFD-----EVVERLGLENVLDR-----------DVSELSGGELQRVAIAAALLRDADVYF 236

Query: 381 LDEATASIDSATDAILQR-----IIRE-EFPGSTVITVAHRVPTITD--SDMFMVLSYGE 432
            DE ++ +D     I QR     +IRE    G  VI V H +  + D  SD   +L YGE
Sbjct: 237 FDEPSSYLD-----IRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHIL-YGE 289

Query: 433 LVEYDLPSKLMETNSA 448
              Y + SK       
Sbjct: 290 PGVYGVVSKPKSVRVG 305

Length = 591

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	467
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.98
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.97
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.97
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.97
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.97
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.97
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.97
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.96
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.95
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.95
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.95
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.94
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.94
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.94
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.94
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.93
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.93
KOG0062	582	consensus ATPase component of ABC transporters wit	99.93
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.92
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.92
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.92
KOG0062	582	consensus ATPase component of ABC transporters wit	99.92
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.92
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.91
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.89
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.88
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.87
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.86
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.85
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.85
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.85
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.83
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.83
cd01128	249	rho_factor Transcription termination factor rho is	99.82
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.82
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.81
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.81
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.78
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.78
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.76
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.75
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.72
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.72
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.72
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.7
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.69
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.68
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.66
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.61
PF00664	275	ABC_membrane: ABC transporter transmembrane region	99.61
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.6
PRK00064	361	recF recombination protein F; Reviewed	99.57
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.54
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.52
PHA02562	562	46 endonuclease subunit; Provisional	99.51
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.5
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.48
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.43
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.43
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.43
PRK10869	553	recombination and repair protein; Provisional	99.39
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.36
PRK13695	174	putative NTPase; Provisional	99.3
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.3
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.28
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.28
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.26
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.24
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.21
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.2
PRK01156	895	chromosome segregation protein; Provisional	99.2
PRK03918	880	chromosome segregation protein; Provisional	99.19
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.19
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.14
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.13
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.1
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.1
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.09
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.06
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.04
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.01
smart00382	148	AAA ATPases associated with a variety of cellular	98.97
COG3910	233	Predicted ATPase [General function prediction only	98.94
PRK02224	880	chromosome segregation protein; Provisional	98.94
PRK06067	234	flagellar accessory protein FlaH; Validated	98.93
PRK00300	205	gmk guanylate kinase; Provisional	98.91
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.89
TIGR00767	415	rho transcription termination factor Rho. Members	98.84
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.78
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.77
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.71
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.68
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.67
TIGR00611	365	recf recF protein. All proteins in this family for	98.67
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.63
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.63
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.61
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.57
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.57
PRK14079	349	recF recombination protein F; Provisional	98.57
PRK01889	356	GTPase RsgA; Reviewed	98.54
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.54
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.53
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.5
PRK08149	428	ATP synthase SpaL; Validated	98.48
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.45
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.41
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.38
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.37
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.36
PRK09825	176	idnK D-gluconate kinase; Provisional	98.33
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.32
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.32
PLN02796	347	D-glycerate 3-kinase	98.29
COG3044	554	Predicted ATPase of the ABC class [General functio	98.28
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.27
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.26
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.26
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.25
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.24
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	98.22
PRK10416	318	signal recognition particle-docking protein FtsY;	98.22
PRK09862	506	putative ATP-dependent protease; Provisional	98.21
PTZ00035	337	Rad51 protein; Provisional	98.2
PRK06315	442	type III secretion system ATPase; Provisional	98.18
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.17
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.15
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.15
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.14

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-92  Score=731.84  Aligned_cols=455  Identities=27%  Similarity=0.418  Sum_probs=402.5

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +||+++|+..+...++..+...+.+.+..++.+++|+++||.++++++..+|+...+.++|.+..+++.+..+++.++.+
T Consensus       248 ~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~  327 (716)
T KOG0058|consen  248 ISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARAN  327 (716)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999998888888888888899999999999999999999


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~  158 (467)
                      +...|.+++++|||+|+.|+.+.++|.+..+...+...+.......+.....+...+....+.++.  +...|.++.|.+
T Consensus       328 ~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L  407 (716)
T KOG0058|consen  328 QVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGAL  407 (716)
T ss_pred             HHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHH
Confidence            999999999999999999999999999988877666544333222222222233333332222221  223489999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV  237 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~  237 (467)
                      ..|+.|...+...+..++..+..+.++..|.+|++|+++.+|.-+..  +...| . ...|.|+|+||+|+||.. +.++
T Consensus       408 ~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p-~-~~~G~IeF~~VsFaYP~Rp~~~V  483 (716)
T KOG0058|consen  408 SSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAP-D-HLQGVIEFEDVSFAYPTRPDVPV  483 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Ccccc-c-cccceEEEEEeeeecCCCCCchh
Confidence            99999999999999999999999999999999999999976543321  11111 1 356789999999999754 3469


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||+|+|||++|+|||||+||||++++|.++|+|++|+|.+||+||++++...+|++||+|.|||.||++||+|||.
T Consensus       484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~  563 (716)
T KOG0058|consen  484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIA  563 (716)
T ss_pred             hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ++. ..+++++..++++++.++||..+|+||||.|||+|.+|||||||||||||||++||+||||||+||+||.++|..+
T Consensus       564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV  643 (716)
T KOG0058|consen  564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV  643 (716)
T ss_pred             cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH
Confidence            754 6789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC-chHHHHHHHHHhh
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN-SAFSKLVAEYRSS  459 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~-~~~~~l~~~~~~~  459 (467)
                      +++|.+..+++|||+|+|||++++.||+|+|+++|+++|.|+|+||++.+ |.|++|.+++...
T Consensus       644 q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~  707 (716)
T KOG0058|consen  644 QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS  707 (716)
T ss_pred             HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence            99999988899999999999999999999999999999999999999966 8999999987543

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.7e-88  Score=755.88  Aligned_cols=457  Identities=52%  Similarity=0.857  Sum_probs=434.6

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +||+++|++.+|..+|..+..++..++.+++.++++.+..|+++++++|+.+++++++++|.+..|++++.+..+++|++
T Consensus       918 LNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~  997 (1381)
T KOG0054|consen  918 LNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIY  997 (1381)
T ss_pred             hhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGK-HLPGFVG  159 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~  159 (467)
                      +|+.|+++|+.|||+|+.+++|.+++.+..|.+.+..+.....++|+..+++++.++++..++++.++.... .++|.++
T Consensus       998 sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vG 1077 (1381)
T KOG0054|consen  998 SHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVG 1077 (1381)
T ss_pred             HhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHH
Confidence            999999999999999999999999999999999999999999999999999999998887777665554433 7799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceec
Q 044927          160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK  239 (467)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~  239 (467)
                      +.++|+..+...+.++.+....+++.+.|+||+.|+.+.|+|++...+...+++.||..|.|+|+|++.+|+++.++||+
T Consensus      1078 Lslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk 1157 (1381)
T KOG0054|consen 1078 LSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLK 1157 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhc
Confidence            99999999999999999999999999999999999999888855544444477889999999999999999988888999


Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL  319 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~  319 (467)
                      |+||+|+|||++||||++|||||||+++|.|+.+|.+|+|.|||+|++++.++++|++++++||||.||+||+|.|++|+
T Consensus      1158 ~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf 1237 (1381)
T KOG0054|consen 1158 GISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF 1237 (1381)
T ss_pred             CceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH
Q 044927          320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~  399 (467)
                      ..++|+++|+++++|++.+.+.++|.|+|+.+.|+|.|+|-||||.+||||||+++++||+|||+|+++|++|+..|++.
T Consensus      1238 ~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~t 1317 (1381)
T KOG0054|consen 1238 DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 1317 (1381)
T ss_pred             cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHHHHH
Q 044927          400 IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAEYR  457 (467)
Q Consensus       400 l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~~~  457 (467)
                      |++.+++||||.|+||++++.+||||+|||+|+|+|.|+|++|+++ ++.|+++..++.
T Consensus      1318 IR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1318 IREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred             HHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999974 677766666554

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=1.3e-86  Score=716.18  Aligned_cols=448  Identities=28%  Similarity=0.412  Sum_probs=401.5

Q ss_pred             ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Q 044927            6 SDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAE   85 (467)
Q Consensus         6 ~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e   85 (467)
                      +|.+.+.++++..+...+..++.+++++++|++++|+++++++..++++..+...+.+..++..+...+..+..++++.|
T Consensus       258 ~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE  337 (709)
T COG2274         258 RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVE  337 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            57889999999999999999999999999999999999998776666665555555555555555555566778889999


Q ss_pred             HHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCccHHHHHHHHH
Q 044927           86 TSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV--LLPGKHLPGFVGLSLS  163 (467)
Q Consensus        86 ~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~  163 (467)
                      +++|+++||+.+.|+++..+|++...+..+..++......+......+++.+..++++++..  ...+.++.|.+.++.+
T Consensus       338 ~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~  417 (709)
T COG2274         338 TIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNM  417 (709)
T ss_pred             HHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            99999999999999999999999999998888888887777777777777766665555532  3458999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceecceeE
Q 044927          164 YALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITC  243 (467)
Q Consensus       164 ~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl  243 (467)
                      +...+..|+..+.+.+..+++...+.+|+.++++.|+|.+..   ..+...++..+.|+++||+|+|+.+.+++|+|+|+
T Consensus       418 l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL  494 (709)
T COG2274         418 LAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSL  494 (709)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cccccccccCceEEEEEEEEEeCCCCcchhhceeE
Confidence            999999999999999999999999999999999988775321   11112234567899999999998876789999999


Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC-CC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MY  322 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~-~~  322 (467)
                      +|++||++||||+||||||||+|+|+|+|+|++|+|++||.|++++++..+|++||||+||+.+|+|||+||+++.. ..
T Consensus       495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~  574 (709)
T COG2274         495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEA  574 (709)
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998754 57


Q ss_pred             CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 044927          323 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE  402 (467)
Q Consensus       323 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~  402 (467)
                      +++++.++|+.+++++++.++|.||+|.+||+|.+||||||||++|||||+++|+|||||||||+||+++|+.+.+.|.+
T Consensus       575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~  654 (709)
T COG2274         575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ  654 (709)
T ss_pred             CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          403 EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       403 ~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      ...++|+|+||||+++++.||||+||++|+|+++|+|+|+++.+|.|+++++.+
T Consensus       655 ~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q  708 (709)
T COG2274         655 ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ  708 (709)
T ss_pred             HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999998754

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=8.8e-84  Score=753.22  Aligned_cols=455  Identities=40%  Similarity=0.676  Sum_probs=411.7

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +||+++|++.++..++..+..++..++.+++.++++++.+|+++++++|++++++++.+++.+..++..+.....+++++
T Consensus      1065 lnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~ 1144 (1522)
T TIGR00957      1065 VNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVY 1144 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            48999999999999999999999999999999999999999888877887777778888888888888888888999999


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL  160 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  160 (467)
                      +++.|+++|+++||+|+.+++|.+++.+..+...+..+.......|+..+++++..++..+++.+.+...+.+++|.+++
T Consensus      1145 ~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ 1224 (1522)
T TIGR00957      1145 SHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGL 1224 (1522)
T ss_pred             HHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999999999999998888877777778888877777655544333333332347789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceecc
Q 044927          161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKG  240 (467)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~  240 (467)
                      ++.|+..+..++..+...+..++.+++|++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+++|+|
T Consensus      1225 ~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~ 1304 (1522)
T TIGR00957      1225 SVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRH 1304 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccc
Confidence            99999999999999999999999999999999999987765432112222333466678899999999997655579999


Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG  320 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~  320 (467)
                      +||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||++|+||||+||++++
T Consensus      1305 is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~ 1384 (1522)
T TIGR00957      1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS 1384 (1522)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999777


Q ss_pred             CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHH
Q 044927          321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l  400 (467)
                      .+++++++++++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|
T Consensus      1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957      1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred             CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927          401 REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE  455 (467)
Q Consensus       401 ~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~  455 (467)
                      ++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||++++|.|++++++
T Consensus      1465 ~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957      1465 RTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred             HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence            9988999999999999999999999999999999999999999988999999875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1e-83  Score=704.19  Aligned_cols=454  Identities=24%  Similarity=0.320  Sum_probs=369.6

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN   81 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (467)
                      +|+.+|...++..+...+..+++++.++++.+++.|+++|+++++++.+.|+.......+.+..........+...+...
T Consensus       769 ~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~  848 (1228)
T KOG0055|consen  769 SRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASK  848 (1228)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999998765554444433222222222222223334455667


Q ss_pred             HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hCCCccHHHHH
Q 044927           82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI-VL-LPGKHLPGFVG  159 (467)
Q Consensus        82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~g~~~  159 (467)
                      ...|++++++||++|+.|+++.+.|.+..++..+...+............+++..++..++..+. .+ ..+.+++..+.
T Consensus       849 iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~  928 (1228)
T KOG0055|consen  849 IAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVF  928 (1228)
T ss_pred             HHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHH
Confidence            89999999999999999999999999988887776555444333332233333333333333332 12 23777776554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCcee
Q 044927          160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLVL  238 (467)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~L  238 (467)
                      ..+.....-...+.........+..+..|+.+++++++.++..+...+..  ....+..|.|+++||+|+||.. +.++|
T Consensus       929 ~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il 1006 (1228)
T KOG0055|consen  929 RVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVL 1006 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhh
Confidence            43322222222334455566788899999999999999765322211111  1112346889999999999743 23589


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++|+.+||||||||||||++.+|.|+|+|++|.|.+||+|+++++++++|++||.|.|+|.||++||+|||.+
T Consensus      1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~Y 1086 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAY 1086 (1228)
T ss_pred             cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      + ...+.+|+.+|++.+++++|+..+|+||||.+||+|.+||||||||||||||++|||+||||||+||+||.++|+.++
T Consensus      1087 G~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQ 1166 (1228)
T KOG0055|consen 1087 GSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQ 1166 (1228)
T ss_pred             cCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHH
Confidence            7 357999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR  457 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~  457 (467)
                      ++|++...|+|+|+|+|||+++++||.|+|+++|+|+|+|+|++|++.+|.|.+|++.+.
T Consensus      1167 eALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1167 EALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred             HHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence            999999999999999999999999999999999999999999999999999999998764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=8.5e-83  Score=689.04  Aligned_cols=453  Identities=21%  Similarity=0.272  Sum_probs=374.8

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++...+..++.+++.+++.++++++++|+++++++.++++..++...+.+..++..+...+..+++.
T Consensus       123 ~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (588)
T PRK11174        123 ATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLS  202 (588)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999998877666666555555565555555555666778889


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHH-
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL-IVLLPGKHLPGFV-  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~-  158 (467)
                      +.+.|.++|+++||+|+.|+.+.+++.+..++..+...+......+......++..+...+++++ .....|.++.|.+ 
T Consensus       203 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~  282 (588)
T PRK11174        203 GHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYLGELNFGHYG  282 (588)
T ss_pred             HHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            99999999999999999999999999888777666554443333333333333332222121111 1122255555432 


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEe
Q 044927          159 --------GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY  230 (467)
Q Consensus       159 --------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y  230 (467)
                              .+++.+...+..|+..+...+..++++.++.+|+.++++.+++.+.  ...... +.+..+.|+++||+|.|
T Consensus       283 ~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~~~~~-~~~~~~~i~~~~vsf~~  359 (588)
T PRK11174        283 TGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QGEKEL-ASNDPVTIEAEDLEILS  359 (588)
T ss_pred             ccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCcccc-CCCCCceEEEEeeEEec
Confidence                    2222455567788888999999999999999999999987654221  111000 10123469999999877


Q ss_pred             CCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc
Q 044927          231 RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG  310 (467)
Q Consensus       231 ~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~  310 (467)
                      +++ +++|+|+||+|++||++||+||||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+||||+|++|++
T Consensus       360 ~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~  437 (588)
T PRK11174        360 PDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG  437 (588)
T ss_pred             cCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc
Confidence            544 46999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             cHHHhcCcC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCC
Q 044927          311 SVRTNLDPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID  389 (467)
Q Consensus       311 tv~enl~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD  389 (467)
                      ||+|||.++ +++++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||
T Consensus       438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD  517 (588)
T PRK11174        438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD  517 (588)
T ss_pred             CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence            999999876 4689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927          390 SATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS  458 (467)
Q Consensus       390 ~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~  458 (467)
                      +++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++++.+.+
T Consensus       518 ~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~  586 (588)
T PRK11174        518 AHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQE  586 (588)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhc
Confidence            999999999999988899999999999999999999999999999999999999999999999887654

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.8e-82  Score=740.19  Aligned_cols=456  Identities=40%  Similarity=0.692  Sum_probs=397.8

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +||+++|++.++..++..+..++..++.+++.++++++++|...++++|++++++++..++.+..++..+.....+++++
T Consensus      1013 lnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~ 1092 (1622)
T PLN03130       1013 INRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVY 1092 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            48999999999999999999999999999999999988888776667777666666677787888888888888899999


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----cH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKH-----LP  155 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  155 (467)
                      +++.|+++|+++||+|+.+++|.+.+.+..+...+..+.......|+..+..++..++..+++.+.+...+..     ..
T Consensus      1093 ~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 1172 (1622)
T PLN03130       1093 AQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFA 1172 (1622)
T ss_pred             HHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhh
Confidence            9999999999999999999999999888888877776666666778776666665544433332222222211     14


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCC
Q 044927          156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTP  235 (467)
Q Consensus       156 g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~  235 (467)
                      +.++.++.|+..+..++..+......++..+++++|+.++++.|+|.+...+...++..||..+.|+|+||+|+|+++.+
T Consensus      1173 ~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~ 1252 (1622)
T PLN03130       1173 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP 1252 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC
Confidence            55666777777888888888888888999999999999999987765432122223334566778999999999976656


Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      ++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||.+|+||||||
T Consensus      1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130       1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927          316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI  395 (467)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~  395 (467)
                      |+++..+++++++++++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.
T Consensus      1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~ 1412 (1622)
T PLN03130       1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412 (1622)
T ss_pred             hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence            99877889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHHHH
Q 044927          396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAEY  456 (467)
Q Consensus       396 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~~  456 (467)
                      |++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||++. +|.|++|++..
T Consensus      1413 Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130       1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred             HHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence            99999999889999999999999999999999999999999999999986 68999998754

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=6.1e-82  Score=679.26  Aligned_cols=451  Identities=26%  Similarity=0.414  Sum_probs=383.9

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++..+.+....+..+++.+++.+++++..+|.++++++...++..+....+.++.++..+..++..+++.
T Consensus       112 ~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (567)
T COG1132         112 ISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELN  191 (567)
T ss_pred             HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999876677688999999999999999998887666665555555555444566666666778899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.++...+++.+..+...+...+..............+..+......++  .....+.++.|.+
T Consensus       192 ~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  271 (567)
T COG1132         192 ARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGAL  271 (567)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHH
Confidence            99999999999999999999888888776666555543333333333333333333333222222  1223477899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .+++.|...+..++..+...+..++.+..+.+|+.++++.+++...   ....  .....+.|+++||+|+|+++ +++|
T Consensus       272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~y~~~-~~vl  345 (567)
T COG1132         272 AAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFSYPGK-KPVL  345 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEEcCCC-Cccc
Confidence            9999999999999999999999999999999999999987543221   1111  11234679999999999753 4599


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||++||||||||||||++++|+|+|+|++|+|++||+|+++++..++|++|++|||||+||++||+|||.+
T Consensus       346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~  425 (567)
T COG1132         346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIAL  425 (567)
T ss_pred             cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      +. ++++++++++++.+++++++.++|+||||.+||+|.+||||||||++||||+++||||||||||||+||+++|+.++
T Consensus       426 g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~  505 (567)
T COG1132         426 GRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ  505 (567)
T ss_pred             CCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHH
Confidence            75 47999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR  457 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~  457 (467)
                      +.+.+..+++|+|+|+||++++++||+|+||++|+|+|.|+|+||++.+|.|+++++.+.
T Consensus       506 ~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~  565 (567)
T COG1132         506 DALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG  565 (567)
T ss_pred             HHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence            999987788999999999999999999999999999999999999999999999998764

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.1e-81  Score=730.89  Aligned_cols=456  Identities=40%  Similarity=0.689  Sum_probs=391.3

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +||+++|++.++..++..+..++..++.+++.++++++++|...++++|+.++++++..++.+..++..+.....+++++
T Consensus      1010 lnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~ 1089 (1495)
T PLN03232       1010 INRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIY 1089 (1495)
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            48999999999999999999999999888888888888887666666676666666666777777788888888999999


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----cH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKH-----LP  155 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  155 (467)
                      +++.|+++|+++||+|+.++++.+++.+..+...+..+.......|+......+..++..+++.+.+...+..     ..
T Consensus      1090 ~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 1169 (1495)
T PLN03232       1090 AQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFA 1169 (1495)
T ss_pred             HHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch
Confidence            9999999999999999999999998888888777766655555667666555444333332222222222321     13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCC
Q 044927          156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTP  235 (467)
Q Consensus       156 g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~  235 (467)
                      +.++.++.|...+..++..+...+..++.++++++|+.++++.++|.+...+...++..||..+.|+|+||+|+|+++.+
T Consensus      1170 ~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~ 1249 (1495)
T PLN03232       1170 STMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP 1249 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC
Confidence            44556677778888888888999999999999999999999887664421111122334566678999999999976556


Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      ++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||++|+||||||
T Consensus      1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232       1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred             cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927          316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI  395 (467)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~  395 (467)
                      |+++..+++++++++++.+++++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.
T Consensus      1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~ 1409 (1495)
T PLN03232       1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409 (1495)
T ss_pred             cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence            99877889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC-chHHHHHHHH
Q 044927          396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN-SAFSKLVAEY  456 (467)
Q Consensus       396 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~-~~~~~l~~~~  456 (467)
                      |++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||++++ +.|++|++..
T Consensus      1410 Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232       1410 IQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred             HHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence            999999988899999999999999999999999999999999999999875 5899998754

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-80  Score=682.95  Aligned_cols=446  Identities=24%  Similarity=0.335  Sum_probs=381.0

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN   81 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (467)
                      +|++ |++.+++++...+...+..++.++++++++++++|+++++++.++++.+++...+.+..++..+...+..++..+
T Consensus       237 ~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (686)
T TIGR03797       237 SRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISG  315 (686)
T ss_pred             HHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6776 789999998888888888888888888999999999988776665555555444544444444455556677889


Q ss_pred             HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHHH
Q 044927           82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFVG  159 (467)
Q Consensus        82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~  159 (467)
                      .+.|.++|+++||+++.|+++.++|.+..++..+...+......+......++..+...++.++.  ....|.++.|.+.
T Consensus       316 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lv  395 (686)
T TIGR03797       316 LTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFL  395 (686)
T ss_pred             HHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999999999888877776666555555554444444333333222222  2245889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceec
Q 044927          160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK  239 (467)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~  239 (467)
                      ++..+...+..|+..+...+..++.+..+.+|+.++++.++|.+.   ....+  .+..+.|+++||+|+|+++.+++|+
T Consensus       396 a~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvsf~Y~~~~~~vL~  470 (686)
T TIGR03797       396 AFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVTFRYRPDGPLILD  470 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEEEEcCCCCcccee
Confidence            999999999999999999999999999999999999987654321   11111  1124579999999999755567999


Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL  319 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~  319 (467)
                      |+||+|++||++||+||||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++||||||+|++|++|++|||.++
T Consensus       471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~  550 (686)
T TIGR03797       471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGG  550 (686)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH
Q 044927          320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~  399 (467)
                      ...++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|++||||||||+||+++|+.+.+.
T Consensus       551 ~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~  630 (686)
T TIGR03797       551 APLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES  630 (686)
T ss_pred             CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence            55889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927          400 IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE  455 (467)
Q Consensus       400 l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~  455 (467)
                      |++.  ++|+|+||||+++++.||+|++|++|+|++.|+|+|++++++.|+++++.
T Consensus       631 L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~  684 (686)
T TIGR03797       631 LERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR  684 (686)
T ss_pred             HHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence            9886  58999999999999999999999999999999999999999999998864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=3.6e-80  Score=721.56  Aligned_cols=456  Identities=32%  Similarity=0.530  Sum_probs=401.0

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +||+++|++.++..++..+..++..++.+++.++++++.+|.++++++|++++++.+..++.+..++.++......++++
T Consensus      1058 lnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~ 1137 (1560)
T PTZ00243       1058 LNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVF 1137 (1560)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence            48999999999999999999999999999999999999999777777777767777778888888888888888999999


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-CCCccHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV---LL-PGKHLPG  156 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~g  156 (467)
                      +++.|+++|+++||+|+.++.+.+++.+..+...+..+.......|+..+..++..++..+++++.+   .. .+.+++|
T Consensus      1138 s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 1217 (1560)
T PTZ00243       1138 TLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIG 1217 (1560)
T ss_pred             HHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence            9999999999999999999999999999998888877777777888887777766554433322211   11 2446789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCC-c----------------------cCCCCC
Q 044927          157 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL-PPEPPAI-I----------------------EETKPP  212 (467)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~-~~~~~~~-~----------------------~~~~~~  212 (467)
                      .++++++|+..+..++..+...+..++.++.+++|+.++++. ++|.... .                      +...++
T Consensus      1218 ~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1297 (1560)
T PTZ00243       1218 LVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPT 1297 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCc
Confidence            888889999999999999999999999999999999999963 3221000 0                      000011


Q ss_pred             ---CCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC
Q 044927          213 ---ASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM  289 (467)
Q Consensus       213 ---~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~  289 (467)
                         +.++..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus      1298 ~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i 1377 (1560)
T PTZ00243       1298 SAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY 1377 (1560)
T ss_pred             ccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC
Confidence               11223467999999999986656799999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          290 GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       290 ~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +.+++|++|+||||||+||+|||++||+++..+++++++++++++++++++.++|+||||.+|++|.+||||||||+|||
T Consensus      1378 ~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243       1378 GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred             CHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHH
Confidence            99999999999999999999999999998778899999999999999999999999999999999999999999999999


Q ss_pred             HHhcCC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc-cCc
Q 044927          370 RVLLKR-NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME-TNS  447 (467)
Q Consensus       370 Ral~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~-~~~  447 (467)
                      |||+++ |+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||++ .++
T Consensus      1458 RALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~ 1537 (1560)
T PTZ00243       1458 RALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQS 1537 (1560)
T ss_pred             HHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence            999996 899999999999999999999999999888999999999999999999999999999999999999997 489


Q ss_pred             hHHHHHHHH
Q 044927          448 AFSKLVAEY  456 (467)
Q Consensus       448 ~~~~l~~~~  456 (467)
                      .|+++++..
T Consensus      1538 ~f~~l~~~~ 1546 (1560)
T PTZ00243       1538 IFHSMVEAL 1546 (1560)
T ss_pred             HHHHHHHHh
Confidence            999998754

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=5.1e-80  Score=666.73  Aligned_cols=451  Identities=21%  Similarity=0.300  Sum_probs=388.4

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++..+...+..++..++.++++++++++++|+++++++.++++.+++...+.+..++..+...+..+.+.
T Consensus       125 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (582)
T PRK11176        125 LSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVT  204 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999998877766666555555565555555555566677888


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.|+.+.++|.+..+...+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       205 ~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~  284 (582)
T PRK11176        205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTI  284 (582)
T ss_pred             HHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999988888777665555544444444444433333222222  1234588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      ++++.+...+..|+..+...+..++.+..+.+|+.++++.+++.+.   .....  .+..+.|+++||+|+|+++.+++|
T Consensus       285 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~--~~~~~~i~~~~vsf~y~~~~~~il  359 (582)
T PRK11176        285 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GKRVI--ERAKGDIEFRNVTFTYPGKEVPAL  359 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CCcCC--CCCCCeEEEEEEEEecCCCCCccc
Confidence            8888888889999999999999999999999999999986544221   11111  122346999999999976556799


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++|++|++|||.+
T Consensus       360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~  439 (582)
T PRK11176        360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAY  439 (582)
T ss_pred             cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          319 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       319 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      +.  .+++++++++++.++++++++++|+|+||.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+
T Consensus       440 ~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i  519 (582)
T PRK11176        440 ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI  519 (582)
T ss_pred             CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence            53  3789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      .+.|.+..+++|+|+||||++.++.||+|++|++|+|++.|+|+++++.++.|+++++.+
T Consensus       520 ~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~  579 (582)
T PRK11176        520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ  579 (582)
T ss_pred             HHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence            999999878899999999999999999999999999999999999999999999998765

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=4.5e-80  Score=679.10  Aligned_cols=446  Identities=25%  Similarity=0.362  Sum_probs=378.4

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++..+...+..++.+++.++++++++++++|+++++++..+++..++...+.+..++..+...+..++..
T Consensus       261 ~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (711)
T TIGR00958       261 TSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKAN  340 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999998877766666666666666666666666667777889


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.|+++.++|.+..++..+...+..............+..+...++..+  .....|.+++|.+
T Consensus       341 ~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~l  420 (711)
T TIGR00958       341 QVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL  420 (711)
T ss_pred             HHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999988877666544333322222211222222222111111  1234588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV  237 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~  237 (467)
                      .+++.|...+..++..+...+..++++..+.+|+.++++.+++.+..  ....  +.+..+.|+++||+|+|++. ++++
T Consensus       421 va~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~--~~~~~~~I~~~nVsf~Y~~~~~~~v  496 (711)
T TIGR00958       421 VSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GTLA--PLNLEGLIEFQDVSFSYPNRPDVPV  496 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCC--CCCCCCeEEEEEEEEECCCCCCCcc
Confidence            99999999999999999999999999999999999999875543211  1101  11234579999999999753 3569


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++|++|++|||.
T Consensus       497 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~  576 (711)
T TIGR00958       497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIA  576 (711)
T ss_pred             ccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          318 PL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       318 ~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ++ +..++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.+
T Consensus       577 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i  656 (711)
T TIGR00958       577 YGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL  656 (711)
T ss_pred             cCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHH
Confidence            65 35788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL  452 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l  452 (467)
                      .+  ....+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++
T Consensus       657 ~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l  710 (711)
T TIGR00958       657 QE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL  710 (711)
T ss_pred             HH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence            98  3334689999999999999999999999999999999999999988988876

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=6.1e-80  Score=679.97  Aligned_cols=450  Identities=22%  Similarity=0.296  Sum_probs=383.9

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++| +.+.+++...+..++..++.++++++++++++|+++++++.++++..++...+.+..++..+...+..++..
T Consensus       254 ~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (710)
T TIGR03796       254 ASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLT  332 (710)
T ss_pred             HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3688887 689999998999999999999999999999999999887776666666666666655555555556677889


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+++.|+.+.++|.+...+..+...+......+......++..+...++.++.  ....|.+++|.+
T Consensus       333 ~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~l  412 (710)
T TIGR03796       333 GVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGML  412 (710)
T ss_pred             HHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            999999999999999999999999998887777666555555444444444444333333222221  224588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccC--CCCCCC-CCCcccEEEEeEEEEeCCCCC
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--TKPPAS-WPSHGRIELEDLKVRYRPNTP  235 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~~~~vs~~y~~~~~  235 (467)
                      .++..+...+..|+..+...+..++++..+++|+.++++.++|.+.....  ...... .+..+.|+++||+|+|++..+
T Consensus       413 va~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~  492 (710)
T TIGR03796       413 VAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEP  492 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCC
Confidence            99999999999999999999999999999999999999876554221100  000001 123457999999999986556


Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      ++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|++|++|++||
T Consensus       493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN  572 (710)
T TIGR03796       493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN  572 (710)
T ss_pred             CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927          316 LDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA  394 (467)
Q Consensus       316 l~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~  394 (467)
                      |.++. ..++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|++||||||||+||+++|+
T Consensus       573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~  652 (710)
T TIGR03796       573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK  652 (710)
T ss_pred             hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHH
Confidence            98653 57899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927          395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV  453 (467)
Q Consensus       395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~  453 (467)
                      .+.+.+++  .++|+|+||||++++..||||++|++|+|++.|+|+|+++.++.|++++
T Consensus       653 ~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~  709 (710)
T TIGR03796       653 IIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI  709 (710)
T ss_pred             HHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence            99999987  4899999999999999999999999999999999999999999998876

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.3e-79  Score=660.96  Aligned_cols=450  Identities=20%  Similarity=0.276  Sum_probs=376.3

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAK-YIQGYYLSSARELMRMNGTTKAPI   79 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (467)
                      ++|+++|++.++.++.+.+..++.+++.++++++++++++|+++++++.++++.. .+...+.+..++..+...+..+++
T Consensus       120 ~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (574)
T PRK11160        120 LNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQY  199 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999887644443332 233444444444455555677888


Q ss_pred             HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCccHHHH
Q 044927           80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI-VLLPGKHLPGFV  158 (467)
Q Consensus        80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~  158 (467)
                      .+.+.|.++|+++||+|+.|+++.+++.+..++..+...+......+......++..+...++.++. ....|.++.|.+
T Consensus       200 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l  279 (574)
T PRK11160        200 RVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGAL  279 (574)
T ss_pred             HHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence            9999999999999999999999999999988877776665555444444444433333322222221 223577888887


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCce
Q 044927          159 GLSLSYAL-TLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLV  237 (467)
Q Consensus       159 ~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~  237 (467)
                      .+++.|.. ....++..+...+..++++.++.+|+.++++.+++.+.. ... ..  .+..+.|+++||+|+|+++.+++
T Consensus       280 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~-~~~-~~--~~~~~~i~~~~v~f~y~~~~~~i  355 (574)
T PRK11160        280 IALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP-TTS-TA--AADQVSLTLNNVSFTYPDQPQPV  355 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-ccc-CC--CCCCCeEEEEEEEEECCCCCCcc
Confidence            77776653 345577777888889999999999999999876542211 011 11  12245799999999997654569


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||++++||++||+||||||||||+++|+|+|+|++|+|++||+++++++..++|++|+||||+|++|++|++||+.
T Consensus       356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~  435 (574)
T PRK11160        356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLL  435 (574)
T ss_pred             eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      +.. ..++++++++++.+++++++++ |+||||.+||+|.+||||||||++||||++++|++||||||||+||+++++.+
T Consensus       436 ~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i  514 (574)
T PRK11160        436 LAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI  514 (574)
T ss_pred             cCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            653 5789999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE  455 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~  455 (467)
                      .+.+++..+++|+|+||||++++..||+|++|++|++++.|+|+|+++.+|.|+++++.
T Consensus       515 ~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~  573 (574)
T PRK11160        515 LELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR  573 (574)
T ss_pred             HHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence            99999988899999999999999999999999999999999999999999999998763

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1e-79  Score=677.80  Aligned_cols=448  Identities=22%  Similarity=0.278  Sum_probs=380.0

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|++ |++.+.+++...+..++..++.++++++++++++|+++++++..+++..++...+.+..++..+...+..+...
T Consensus       256 ~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (708)
T TIGR01193       256 VSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLN  334 (708)
T ss_pred             HHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36887 89999998888888888888888888888999999998887666666655555666666666666666778889


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|+++|+++||+|+.|+++.++|.+..++..+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       335 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~l  414 (708)
T TIGR01193       335 SSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQL  414 (708)
T ss_pred             HHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999888777666555444433333332223222222222222  2224589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .++..+...+..|+..+...+..++.+..+.+|+.++++.++|.+...   ......+..+.|+++||+|+|+++ +++|
T Consensus       415 va~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL  490 (708)
T TIGR01193       415 ITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELNNLNGDIVINDVSYSYGYG-SNIL  490 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCCCCCCcEEEEEEEEEcCCC-Ccce
Confidence            999999999999999999999999999999999999998766543211   001111234679999999999743 4699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||+|++|++||+|||.+
T Consensus       491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l  570 (708)
T TIGR01193       491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL  570 (708)
T ss_pred             eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C--CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          319 L--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       319 ~--~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      +  +.+++++++++++.+++++++.++|+||||.+|++|.+||||||||++||||++++|++||||||||+||+++++.+
T Consensus       571 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i  650 (708)
T TIGR01193       571 GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI  650 (708)
T ss_pred             cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence            5  35789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA  454 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~  454 (467)
                      .+.|++. +++|+|+||||+++++.||+|++|++|++++.|+|+|+++.+|.|+++++
T Consensus       651 ~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~  707 (708)
T TIGR01193       651 VNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH  707 (708)
T ss_pred             HHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence            9999885 68999999999999999999999999999999999999999999998864

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=6.4e-79  Score=659.14  Aligned_cols=452  Identities=25%  Similarity=0.339  Sum_probs=378.1

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++..+...+..++..++.++++++++++++|+++++++..+++.+.+...+.+..++..+...+..++..
T Consensus       125 ~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (592)
T PRK10790        125 ISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADIN  204 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999998765544444333333344444444444445567788


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWL-VLRIEALQNLIILTA-ALLIVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~  158 (467)
                      +++.|.++|+++||+|+.|+.+.+++.+..++..+...+......+. .....++..+...++ .+......|.+++|.+
T Consensus       205 ~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l  284 (592)
T PRK10790        205 DGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVL  284 (592)
T ss_pred             HHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence            89999999999999999999999999887776655544333322221 112222222221111 1111224588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .++..|...+..|+..+...+..++++..+.+|+.++++.++++..   ....   ....+.|+++||+|+|+++ +++|
T Consensus       285 ~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~~---~~~~~~i~~~~v~f~y~~~-~~il  357 (592)
T PRK10790        285 YAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---NDDR---PLQSGRIDIDNVSFAYRDD-NLVL  357 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CCcc---CCCCCeEEEEEEEEEeCCC-Ccee
Confidence            9999999999999999999999999999999999999986543211   1111   1123569999999999754 4699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||++||+|+||||||||+++|+|+|+|++|+|++||.|+++++.+.+|++|+||||+|++|++|++|||.+
T Consensus       358 ~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~  437 (592)
T PRK10790        358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTL  437 (592)
T ss_pred             eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927          319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR  398 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~  398 (467)
                      +..+++++++++++.++++++++++|+|+||.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+.+
T Consensus       438 ~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~  517 (592)
T PRK10790        438 GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ  517 (592)
T ss_pred             CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence            76788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHhh
Q 044927          399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSS  459 (467)
Q Consensus       399 ~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~~  459 (467)
                      .|++..+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.++.|+++++.+...
T Consensus       518 ~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~~  578 (592)
T PRK10790        518 ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAG  578 (592)
T ss_pred             HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhhh
Confidence            9999878899999999999999999999999999999999999999999999999876443

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.5e-79  Score=713.87  Aligned_cols=455  Identities=29%  Similarity=0.514  Sum_probs=401.5

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +||+++|++.++..++..+..++..++.+++.++++++++|+++++++|++++++++.+++.+..++..+.....+++++
T Consensus       985 lnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~ 1064 (1490)
T TIGR01271       985 LNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIF 1064 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            48999999999999999999999999999999999999999988888887777777888888888888888888999999


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL  160 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  160 (467)
                      +++.|+++|+.+||+|+.++++.+++.+..+...+..+.......|+..+..++..+....+.++.+ .......|.++.
T Consensus      1065 ~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~-~~~~~~~g~~g~ 1143 (1490)
T TIGR01271      1065 SHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAI-GTNQDGEGEVGI 1143 (1490)
T ss_pred             HHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCccHHHH
Confidence            9999999999999999999999999999988777766666666778877766654433322222211 112345666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccC--------------CCCCCCCCCcccEEEEeE
Q 044927          161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEE--------------TKPPASWPSHGRIELEDL  226 (467)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~~v  226 (467)
                      +++|+..+..++..+...+..++..+.|++|+.++++.++|.+...+.              ..++..||..+.|+|+||
T Consensus      1144 ~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nV 1223 (1490)
T TIGR01271      1144 ILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGL 1223 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEE
Confidence            778888888888888888899999999999999999877654321110              112234666788999999


Q ss_pred             EEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCc
Q 044927          227 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT  306 (467)
Q Consensus       227 s~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~  306 (467)
                      +|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+++ ++|+|++||+|+++++.+++|++|+||||+|+
T Consensus      1224 s~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~ 1302 (1490)
T TIGR01271      1224 TAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF 1302 (1490)
T ss_pred             EEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc
Confidence            99998666679999999999999999999999999999999999997 79999999999999999999999999999999


Q ss_pred             cccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC
Q 044927          307 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA  386 (467)
Q Consensus       307 lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts  386 (467)
                      +|+||||+||++...+++++++++++.+++.+++.++|+|+||.++++|.+||||||||+||||||+++|+|||||||||
T Consensus      1303 LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS 1382 (1490)
T TIGR01271      1303 IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSA 1382 (1490)
T ss_pred             cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence            99999999999877789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927          387 SIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR  457 (467)
Q Consensus       387 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~  457 (467)
                      +||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|++|++.++.|++|+++..
T Consensus      1383 ~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271      1383 HLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence            99999999999999999889999999999999999999999999999999999999988899999987653

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=6.3e-79  Score=670.09  Aligned_cols=440  Identities=23%  Similarity=0.326  Sum_probs=376.2

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN   81 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (467)
                      +|+ +|++.+++++...+...+..++.++++++++++++|+++++++..+++.+.+...+.+..++..+...+..++..+
T Consensus       247 ~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (694)
T TIGR03375       247 NQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNA  325 (694)
T ss_pred             HHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677 7999999999888888888888888888899999999988776666665555555555555555556667788899


Q ss_pred             HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHHH
Q 044927           82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFVG  159 (467)
Q Consensus        82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~  159 (467)
                      .+.|+++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++  ..+..|.+++|.+.
T Consensus       326 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~  405 (694)
T TIGR03375       326 VLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLI  405 (694)
T ss_pred             HHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999999999999999999988887766665555544444433333333322222222  12345889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceec
Q 044927          160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK  239 (467)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~  239 (467)
                      ++..+...+..|+..+...+..++.+..+.+|+.++++.++|.+..  .. .....+..+.|+++||+|+|+++.+++|+
T Consensus       406 a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~  482 (694)
T TIGR03375       406 ACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--TR-FLHRPRLQGEIEFRNVSFAYPGQETPALD  482 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CC-CCCCCCccceEEEEEEEEEeCCCCcccee
Confidence            9999999999999999999999999999999999999876553211  11 01011234579999999999765567999


Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL  319 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~  319 (467)
                      |+||+|++||++||+||||||||||+++|+|+|+|++|+|.+||+|+++++..++|++|+||||+|++|++|++|||.+.
T Consensus       483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~  562 (694)
T TIGR03375       483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG  562 (694)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927          320 G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR  398 (467)
Q Consensus       320 ~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~  398 (467)
                      . .+++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|+++|||||||+||+++++.+++
T Consensus       563 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~  642 (694)
T TIGR03375       563 APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD  642 (694)
T ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence            4 478999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927          399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       399 ~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      .|.+..+++|+|+||||+++++.||+|++|++|+|++.|+|+||++.
T Consensus       643 ~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       643 RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             HHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence            99998889999999999999999999999999999999999999863

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.1e-79  Score=616.80  Aligned_cols=449  Identities=21%  Similarity=0.324  Sum_probs=375.8

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccccH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTV-IVAKYIQGYYLSSARELMRMNGTTKAPI   79 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (467)
                      ++|++.|++.+++.+-..+.+.+.+++...+..+.+.+++|++++.+...+ ++.+.++..+.+..++..+.-...++.+
T Consensus       118 L~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~l  197 (573)
T COG4987         118 LNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAAL  197 (573)
T ss_pred             HHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999987654333 3333445555555555555556677889


Q ss_pred             HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-CCCccHHH
Q 044927           80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL-L-PGKHLPGF  157 (467)
Q Consensus        80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~  157 (467)
                      .+++.|.+.|..+.+.||+++.+.+.+.+..+...+...+......|..+.+.++..+.+....++... . .|..+...
T Consensus       198 r~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~  277 (573)
T COG4987         198 RSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPG  277 (573)
T ss_pred             HHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhH
Confidence            999999999999999999999999999888877777766666666666665555544443322222221 1 15555333


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCc
Q 044927          158 VGLSLSYALTLSSIQVIMT-RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPL  236 (467)
Q Consensus       158 ~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~  236 (467)
                      ..+++...+....++..+. ..+..+.+...|..|+.++.+.+++....   ......  ....++++||||+|+++.++
T Consensus       278 aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~---~~~~~~--~~~~l~~~~vsF~y~~~~~~  352 (573)
T COG4987         278 AALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP---DEQTAT--TGQALELRNVSFTYPGQQTK  352 (573)
T ss_pred             HHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC---ccccCC--ccceeeeccceeecCCCccc
Confidence            3333333345555555555 66788899999999999998866543221   111111  11269999999999988878


Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL  316 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl  316 (467)
                      +|+|+||++++||++||+|+||||||||++++.|.|+|++|+|.++|.++..++.+++|+.|++++|.+++|++|+|+|+
T Consensus       353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL  432 (573)
T COG4987         353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNL  432 (573)
T ss_pred             hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927          317 DPL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI  395 (467)
Q Consensus       317 ~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~  395 (467)
                      ... ++++||+++++++++|+++++...|+||+|++||+|..||||||||++|||+|++|+|++||||||.|||+.||++
T Consensus       433 ~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~  512 (573)
T COG4987         433 RLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ  512 (573)
T ss_pred             hhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHH
Confidence            754 4789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927          396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA  454 (467)
Q Consensus       396 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~  454 (467)
                      +++.+.+..+|||+|+||||+..++.||||+||++|+++++|+|.+|++++|.|+++++
T Consensus       513 vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q  571 (573)
T COG4987         513 VLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ  571 (573)
T ss_pred             HHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence            99999999899999999999999999999999999999999999999999999998875

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-78  Score=621.15  Aligned_cols=449  Identities=22%  Similarity=0.309  Sum_probs=383.7

Q ss_pred             hhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Q 044927            3 QVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIV---AIPTVIVAKYIQGYYLSSARELMRMNGTTKAPI   79 (467)
Q Consensus         3 r~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (467)
                      .++..++.++.++...++++..+.+..+..++.+++++|..+++   ++|++|+++++   .....+...+.+......+
T Consensus       102 l~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~l  178 (559)
T COG4988         102 LALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARL  178 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999998765   45666666554   3334444555555677789


Q ss_pred             HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhC-CCccHH
Q 044927           80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLP-GKHLPG  156 (467)
Q Consensus        80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~g  156 (467)
                      .+++.|.++|+.|+|.|+..+...++..+...++.+.....-+....-+..++++..+.+.+++++.  -+.. |.++..
T Consensus       179 s~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~  258 (559)
T COG4988         179 SGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLF  258 (559)
T ss_pred             HHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHH
Confidence            9999999999999999999999888888877777776666555555555566776666655554442  2344 577766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCc
Q 044927          157 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPL  236 (467)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~  236 (467)
                      ...+++..+.-++.|+..+...++.-.++.++.+++..+++.|.+.+....  +....+.....++.+|++|.|++++ +
T Consensus       259 ~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~  335 (559)
T COG4988         259 AGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-P  335 (559)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-c
Confidence            666666777788999999999999999999999999999987655432111  1011111223456669999998765 6


Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL  316 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl  316 (467)
                      +++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++.+++..+||++++||+|+|++|++|++|||
T Consensus       336 ~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi  415 (559)
T COG4988         336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI  415 (559)
T ss_pred             ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927          317 DPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI  395 (467)
Q Consensus       317 ~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~  395 (467)
                      .+.. +.++++++++++++++.+++.. |+|+||.+||+|.+|||||+||+++||||+++++++|+|||||+||.++|+.
T Consensus       416 ~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~  494 (559)
T COG4988         416 LLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI  494 (559)
T ss_pred             hccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH
Confidence            8765 5789999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927          396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS  458 (467)
Q Consensus       396 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~  458 (467)
                      |++.|.++.+++|+|+||||+..+..||+|+||++|++++.|+|++|.+++|.|++|++++..
T Consensus       495 i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~  557 (559)
T COG4988         495 ILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG  557 (559)
T ss_pred             HHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999988764

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.2e-80  Score=675.01  Aligned_cols=453  Identities=23%  Similarity=0.292  Sum_probs=371.8

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN   81 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (467)
                      +|+++|++.+++.++..+..++..+.++++.+++.|+..|+++++++++.|+..+....+.+...+....+..+.++..+
T Consensus       132 ~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~  211 (1228)
T KOG0055|consen  132 TRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGS  211 (1228)
T ss_pred             EEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999988877777666555555555555555666777888


Q ss_pred             HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHHH
Q 044927           82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFVG  159 (467)
Q Consensus        82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~  159 (467)
                      ...|++.++|||.+|+.|++..++|.+.++...+...+.............++.........++.  .+..+..++|.+.
T Consensus       212 iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~  291 (1228)
T KOG0055|consen  212 IAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVI  291 (1228)
T ss_pred             HHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence            99999999999999999999999999999888777655443333222222222222222222222  1122445555432


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCC-Ccee
Q 044927          160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNT-PLVL  238 (467)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~-~~~L  238 (467)
                      ..+.....-...+......+..+..+.+++.++++.++..+..........  ......+.|+|+||+|+||... .++|
T Consensus       292 ~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il  369 (1228)
T KOG0055|consen  292 TVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKIL  369 (1228)
T ss_pred             EEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhh
Confidence            222111111111222333456678899999999999986443221111111  1112467899999999998543 3699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||+|++|+++||||||||||||++++|.|+|+|++|+|++||.|+.+++.+++|++||.|.|+|.||++||+|||.+
T Consensus       370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~  449 (1228)
T KOG0055|consen  370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRY  449 (1228)
T ss_pred             CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      +. +++.+++.++++.++.++|+..+|+||+|.+||+|.+|||||||||||||||++||+|||||||||+||+++|+.++
T Consensus       450 G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq  529 (1228)
T KOG0055|consen  450 GKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQ  529 (1228)
T ss_pred             CCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHH
Confidence            65 68999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      ++|++..+|+|.|+|||||+++++||+|+||++|+|+|.|+|+||++.+|.|.+|++.+
T Consensus       530 ~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q  588 (1228)
T KOG0055|consen  530 EALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQ  588 (1228)
T ss_pred             HHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999889999999866

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=6.3e-78  Score=649.23  Aligned_cols=451  Identities=22%  Similarity=0.357  Sum_probs=392.2

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++...+..++..++.++++++++++++|++++++++++++..++...+.+..++..+...+..+++.
T Consensus       114 ~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (571)
T TIGR02203       114 LSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVT  193 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999988777777777777777766666666777788899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+++.++.+.++|.+..+...+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       194 ~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l  273 (571)
T TIGR02203       194 TVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDF  273 (571)
T ss_pred             HHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHH
Confidence            99999999999999999999999999988887777665555544444444444333322222222  1234588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .++..++..+..|+..+...+..++++..+.+|+.++++.+++.+..   ....  .+..+.++++||+|+|++..+++|
T Consensus       274 ~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~--~~~~~~i~~~~v~f~y~~~~~~il  348 (571)
T TIGR02203       274 TAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI--ERARGDVEFRNVTFRYPGRDRPAL  348 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--CCCCCeEEEEEEEEEcCCCCCccc
Confidence            99999999999999999999999999999999999999865543211   1111  112457999999999976555799


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||+++|+|+||||||||+++|+|+++|++|+|++||+++++++.+++|++++|+||+|++|++|++|||.+
T Consensus       349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~  428 (571)
T TIGR02203       349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAY  428 (571)
T ss_pred             cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          319 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       319 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      +.  +.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+
T Consensus       429 ~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i  508 (571)
T TIGR02203       429 GRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV  508 (571)
T ss_pred             CCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence            63  5789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      .+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+++++.++.|+++++.+
T Consensus       509 ~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~  568 (571)
T TIGR02203       509 QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ  568 (571)
T ss_pred             HHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence            999999888999999999999999999999999999999999999998888888876643

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=4.4e-78  Score=699.14  Aligned_cols=456  Identities=23%  Similarity=0.273  Sum_probs=365.7

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSS--ARELMRM-------   71 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~--~~~~~~~-------   71 (467)
                      ++|+++|++.++..+...+..++..++.++++++++++++|+++++++|++++.........+.  .++..+.       
T Consensus       928 ~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1466)
T PTZ00265        928 SAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGT 1007 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence            3689999999999999999999999999999999999999999887766554433222111111  1111111       


Q ss_pred             ------hccccccHHHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044927           72 ------NGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL  145 (467)
Q Consensus        72 ------~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (467)
                            ..+..+.....++|+++|+++||+|+.|+++.++|.+..+...+...+......+......++..+...++.++
T Consensus      1008 ~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1466)
T PTZ00265       1008 VFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWF 1087 (1466)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  11123456789999999999999999999999999998877766555444433333333333333333222222


Q ss_pred             H--HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCC-CCCCCcccEE
Q 044927          146 I--VLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPP-ASWPSHGRIE  222 (467)
Q Consensus       146 ~--~~~~~~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~  222 (467)
                      .  .+..|.+++|.+.+++.+......++..+...+..++.+.++.+|++++++.+++.+......... ......+.|+
T Consensus      1088 G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~ 1167 (1466)
T PTZ00265       1088 GSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIE 1167 (1466)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEE
Confidence            1  223588999987776655443334556677788899999999999999998654321111111100 0112345799


Q ss_pred             EEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC---------------------------
Q 044927          223 LEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---------------------------  274 (467)
Q Consensus       223 ~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p---------------------------  274 (467)
                      |+||+|+|++. ..++|+|+||+|++|+++|||||||||||||+++|+|+|+|                           
T Consensus      1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265       1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred             EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence            99999999743 24699999999999999999999999999999999999999                           


Q ss_pred             ---------------------------CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC-CCCCHHH
Q 044927          275 ---------------------------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL-GMYSDNE  326 (467)
Q Consensus       275 ---------------------------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~-~~~~~~~  326 (467)
                                                 ++|+|++||+|+++++.+++|++||||||+|+||++||+|||.++ +++++++
T Consensus      1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ee 1327 (1466)
T PTZ00265       1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRED 1327 (1466)
T ss_pred             cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHH
Confidence                                       699999999999999999999999999999999999999999876 4689999


Q ss_pred             HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--
Q 044927          327 IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--  404 (467)
Q Consensus       327 ~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--  404 (467)
                      ++++++.+++++++.++|+||||.+||+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++.|.+..  
T Consensus      1328 I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~ 1407 (1466)
T PTZ00265       1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407 (1466)
T ss_pred             HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999873  


Q ss_pred             CCceEEEEccChhHHhhcCEEEEEeC----CEEE-EecChhhHhc-cCchHHHHHHHH
Q 044927          405 PGSTVITVAHRVPTITDSDMFMVLSY----GELV-EYDLPSKLME-TNSAFSKLVAEY  456 (467)
Q Consensus       405 ~~~tvi~itH~l~~~~~~d~i~vl~~----G~iv-~~g~~~~l~~-~~~~~~~l~~~~  456 (467)
                      +++|+|+||||+++++.||+|+||++    |+++ |.|+|+||++ .+|.|+++++.+
T Consensus      1408 ~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265       1408 ADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred             CCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence            68999999999999999999999999    9955 8999999998 589999998753

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=2.2e-77  Score=657.64  Aligned_cols=451  Identities=24%  Similarity=0.352  Sum_probs=383.6

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+ +|++.+++++...+..++..++.++++++++++++|+++++++..+++...+...+.+..++..+...+..++..
T Consensus       239 ~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  317 (694)
T TIGR01846       239 VARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAAT  317 (694)
T ss_pred             HHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677 699999999988888888777777778889999999998877665555555444444444444444445667788


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~  158 (467)
                      +.+.|+++|+++||++|.|+.+.++|.+..++..+...+......+......++..+...++.++.  ....|.+++|.+
T Consensus       318 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~l  397 (694)
T TIGR01846       318 SFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQL  397 (694)
T ss_pred             HHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHH
Confidence            999999999999999999999999999988877776665555555544444444433333222221  224588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .++..+...+..|+..+...+..++.+..+.+|+.++++.+++.+..  ....  .....+.|+++||+|+|+++.+++|
T Consensus       398 ia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~--~~~~~~~i~~~~vsf~y~~~~~~il  473 (694)
T TIGR01846       398 VAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAA--LPELRGAITFENIRFRYAPDSPEVL  473 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCC--CCCCCCeEEEEEEEEEcCCCCcccc
Confidence            99999999999999999999999999999999999999876553211  1001  1112457999999999976555699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||+|++||++||+|+||||||||+++|+|+|+|++|+|++||+++++++.+++|++++||||++++|++|++||+.+
T Consensus       474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~  553 (694)
T TIGR01846       474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIAL  553 (694)
T ss_pred             ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      . +..++++++++++.+++++++.++|+|+||.++++|.+||||||||++||||++++|++||||||||+||+++++.+.
T Consensus       554 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~  633 (694)
T TIGR01846       554 CNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM  633 (694)
T ss_pred             CCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHH
Confidence            4 357899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      +.|++..+++|+|+||||+++++.||+|++|++|+|++.|+|+++++.++.|+++++.+
T Consensus       634 ~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~  692 (694)
T TIGR01846       634 RNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ  692 (694)
T ss_pred             HHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhh
Confidence            99999878999999999999999999999999999999999999999999999998753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=8.7e-77  Score=641.87  Aligned_cols=452  Identities=21%  Similarity=0.292  Sum_probs=382.4

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.+...+...+..++..++.+++.++++++++|+++++++.++++..++...+.+..++..+...+..+.+.
T Consensus       116 ~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~  195 (588)
T PRK13657        116 LHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLF  195 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999988888888888888888888889999999998887766666666666666666666666666778899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||.|+.++.+.+++.+..++..+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       196 ~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~  275 (588)
T PRK13657        196 AHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEV  275 (588)
T ss_pred             HHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHH
Confidence            99999999999999999999999999888777666544443333333333333322222222222  2234589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .+++.+...+..++..+...+..+..+..+.+|+.++++.+++.+... ...+.  .+..+.|+++||+|+|+++ +++|
T Consensus       276 ~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~~~--~~~~~~I~~~~vsf~y~~~-~~iL  351 (588)
T PRK13657        276 VAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP-GAIDL--GRVKGAVEFDDVSFSYDNS-RQGV  351 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC-CCCCc--CCCCCeEEEEEEEEEeCCC-Ccee
Confidence            999999999999999999999999999999999999987644321110 10001  1123469999999999743 4599


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|++||.++++++.+++|++|+||||+|++|++|++|||.+
T Consensus       352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~  431 (588)
T PRK13657        352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV  431 (588)
T ss_pred             cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      . ++.++++++++++.+++++++.++|+|+||.++++|.+||||||||++|||||+++|+++|||||||+||+++++.+.
T Consensus       432 ~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~  511 (588)
T PRK13657        432 GRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK  511 (588)
T ss_pred             CCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence            6 357899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      +.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|+++++..
T Consensus       512 ~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~  570 (588)
T PRK13657        512 AALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ  570 (588)
T ss_pred             HHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence            99998877899999999999999999999999999999999999999889999988754

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.5e-76  Score=634.14  Aligned_cols=451  Identities=20%  Similarity=0.283  Sum_probs=378.2

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVM-ASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPI   79 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (467)
                      ++|+++|++.++..+...+..++..++..+++++++ ++++|+++++++.++++..++...+.+..++..+..++..+++
T Consensus        96 ~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (569)
T PRK10789         96 MARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSL  175 (569)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999888888888888766666666555 5799999887766666666666666665555555555667788


Q ss_pred             HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHH
Q 044927           80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGF  157 (467)
Q Consensus        80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~  157 (467)
                      .+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+..........+...++.++  .....|.+++|.
T Consensus       176 ~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~  255 (569)
T PRK10789        176 NDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQ  255 (569)
T ss_pred             HHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence            999999999999999999999999999888777666555444433333332222222222221111  223458899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCce
Q 044927          158 VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLV  237 (467)
Q Consensus       158 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~  237 (467)
                      +.++..|...+..|+..+...+..++.+.++.+|+.++++.+++.+.   .....  .+..+.|+++|++|+|+++++++
T Consensus       256 l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~--~~~~~~I~~~~v~~~y~~~~~~~  330 (569)
T PRK10789        256 LTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPV--PEGRGELDVNIRQFTYPQTDHPA  330 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCC--CCCCCcEEEEEEEEECCCCCCcc
Confidence            99999999999999999999999999999999999999986543221   11111  11234699999999997654569


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||++++|++++|+||||||||||+++|+|+|+|++|+|++||+++.+++..++|++++|+||+|++|++|++||+.
T Consensus       331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~  410 (569)
T PRK10789        331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA  410 (569)
T ss_pred             ccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          318 PL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       318 ~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      +. +..++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+
T Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i  490 (569)
T PRK10789        411 LGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI  490 (569)
T ss_pred             cCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence            75 35788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      .+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|++++..+
T Consensus       491 ~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~  550 (569)
T PRK10789        491 LHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ  550 (569)
T ss_pred             HHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence            999999878999999999999999999999999999999999999999999999998754

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=7.6e-76  Score=633.57  Aligned_cols=454  Identities=23%  Similarity=0.349  Sum_probs=381.8

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++...+..++..++.++++++++++++|+++++++..+++..++...+.+..++..+...+..+++.
T Consensus       118 ~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (576)
T TIGR02204       118 VSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAG  197 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999998776655555555555555555566666666777889


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+++.++.+.++|.+..++..+...+......+......++..+...+..++  .....|.+++|.+
T Consensus       198 ~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~  277 (576)
T TIGR02204       198 SYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTL  277 (576)
T ss_pred             HHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999888877666554444443443333222222221111111  1224588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCC-Cce
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNT-PLV  237 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~-~~~  237 (467)
                      .++..+...+..|+..+...+..++.+..+.+|+.++++.+++.+......  ....+..+.|+++||+|+|+++. +++
T Consensus       278 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~~i  355 (576)
T TIGR02204       278 GQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK--TLPVPLRGEIEFEQVNFAYPARPDQPA  355 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCc--cCCcCCCceEEEEEEEEECCCCCCCcc
Confidence            999999999999999999999999999999999999998654422111011  11112235699999999997532 569


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|++||.++++++..++|++++|+||+|++|++|++|||.
T Consensus       356 L~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~  435 (576)
T TIGR02204       356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIR  435 (576)
T ss_pred             ccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ++. ..++++++++++.+++.++++++|+|++|.++++|.+||||||||++||||++++|+++|||||||+||+.+++.+
T Consensus       436 ~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i  515 (576)
T TIGR02204       436 YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV  515 (576)
T ss_pred             cCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHH
Confidence            643 5678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      .+.+++..+++|+|+||||++.+..||||++|++|++++.|+|++++++++.|+++++.+
T Consensus       516 ~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~  575 (576)
T TIGR02204       516 QQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ  575 (576)
T ss_pred             HHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence            999999878999999999999999999999999999999999999999999999887643

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=2.2e-75  Score=629.29  Aligned_cols=452  Identities=21%  Similarity=0.279  Sum_probs=381.4

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++...+..++..++.+++++++++.++|+++++++.++++..++...+.++.++..+...+..+++.
T Consensus       116 ~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (585)
T TIGR01192       116 LHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVF  195 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999998888888888888888899999999999887776666666666666666666666666777889


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.++.+.+++.+..++..+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       196 ~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l  275 (585)
T TIGR01192       196 KHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEV  275 (585)
T ss_pred             HHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999888887776655544333332322222222222222222222  1234588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .++..|+..+..++..+...+..++.+..+.+|+.++++.+++....   .......+..+.++++||+|+|+++ +++|
T Consensus       276 ~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l  351 (585)
T TIGR01192       276 IAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADAPELPNVKGAVEFRHITFEFANS-SQGV  351 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccCCCCCCCCCeEEEEEEEEECCCC-Cccc
Confidence            99999999999999999999999999999999999998765432111   1100011123469999999999754 3589


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||++||+||||||||||+++|+|+++|++|+|++||.++.+++.+++|++++||||+|++|++|++||+.+
T Consensus       352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~  431 (585)
T TIGR01192       352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL  431 (585)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      . +..++++++++++.+++++++.++|+|++|.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+.
T Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~  511 (585)
T TIGR01192       432 GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK  511 (585)
T ss_pred             CCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence            5 356889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      +.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++++.|+++++.+
T Consensus       512 ~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~  570 (585)
T TIGR01192       512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRS  570 (585)
T ss_pred             HHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhC
Confidence            99998878999999999999999999999999999999999999999999999998766

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-78  Score=597.28  Aligned_cols=412  Identities=24%  Similarity=0.391  Sum_probs=346.7

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccccHHHHHHHHHchHHHHHHccchHHHHHHHHHHHH
Q 044927           36 MASVTWPVLIVAIPTVIVAKYI----QGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVD  111 (467)
Q Consensus        36 ~~~~~~~l~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~  111 (467)
                      ...++||+.++++..+.++++.    ..+-.+..|+......+++    ..-.|++-+.+|||-|++|++..++|.+...
T Consensus       354 ~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil  429 (790)
T KOG0056|consen  354 FIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAIL  429 (790)
T ss_pred             hhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence            3357999999988877776653    2222223333333222222    3567899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--hCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044927          112 TDARLFFHSNAATEWLVLRIEALQNLIILTAALLI----VL--LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNN  185 (467)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~  185 (467)
                      ++.+..++.......+    ...++.++.+.....    .+  ..+..++|.++.+.+|+.++..|+.++...+..+|..
T Consensus       430 ~Yqk~E~ks~~sLnfL----N~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~n  505 (790)
T KOG0056|consen  430 KYQKQEWKSLASLNFL----NIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKN  505 (790)
T ss_pred             HHHHHHHHHHHHHHHH----HHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            8888766554433322    223333333322221    11  1367889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHH
Q 044927          186 IVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLI  265 (467)
Q Consensus       186 ~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll  265 (467)
                      ...+|+++++++.++|-.+.+  ..++ -....|.|+|+||+|.|+++ +++|+||||+++||+.+|+|||||+||||++
T Consensus       506 fiDmEnmfdllkee~eVvd~P--~a~p-l~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTim  581 (790)
T KOG0056|consen  506 FIDMENMFDLLKEEPEVVDLP--GAPP-LKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIM  581 (790)
T ss_pred             hhhHHHHHHHhhcCchhhcCC--CCCC-ccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHH
Confidence            999999999998655432211  1111 11246789999999999865 4699999999999999999999999999999


Q ss_pred             HHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCC
Q 044927          266 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLP  344 (467)
Q Consensus       266 ~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~  344 (467)
                      ++|.|+++.++|.|++||+||+.....++|++||+||||..||++||..||.+.. .+++|++.++++.+++++.|..+|
T Consensus       582 RlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP  661 (790)
T KOG0056|consen  582 RLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP  661 (790)
T ss_pred             HHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999998764 688999999999999999999999


Q ss_pred             CcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCE
Q 044927          345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDM  424 (467)
Q Consensus       345 ~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~  424 (467)
                      +||+|+|||+|-.||||||||+||||+++++|.|++|||+||+||..+|+.|+.++.+...++|.|+|+||++++-+||.
T Consensus       662 egY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~  741 (790)
T KOG0056|consen  662 EGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADL  741 (790)
T ss_pred             hhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCEEEEecChhhHhcc-CchHHHHHHHHHhh
Q 044927          425 FMVLSYGELVEYDLPSKLMET-NSAFSKLVAEYRSS  459 (467)
Q Consensus       425 i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~~~~~  459 (467)
                      |+|+++|+|+|.|.|+||++. +|.|++||+.+...
T Consensus       742 ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~  777 (790)
T KOG0056|consen  742 ILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAM  777 (790)
T ss_pred             EEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhc
Confidence            999999999999999999986 89999999866543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=1.8e-75  Score=624.35  Aligned_cols=413  Identities=23%  Similarity=0.300  Sum_probs=342.0

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQ-GYYLSSARELMRMNGTTKAPI   79 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (467)
                      ++|+++|++.++..+...+..++..++.++++++++++++|+++++++..+++..++. ..+.+..++..+...+..+++
T Consensus       113 ~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (529)
T TIGR02868       113 LGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQL  192 (529)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999887765544443332 333333333334444566788


Q ss_pred             HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHH
Q 044927           80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGF  157 (467)
Q Consensus        80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~  157 (467)
                      .+++.|.++|+++||+|+.|+.+.+++.+..++..+...+......+......++..+...++.++.  ....|.+++|.
T Consensus       193 ~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~  272 (529)
T TIGR02868       193 YQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPAT  272 (529)
T ss_pred             HHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhH
Confidence            9999999999999999999999999999888777666555444444333333333333222222221  22458899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCce
Q 044927          158 VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLV  237 (467)
Q Consensus       158 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~  237 (467)
                      +.+++.+...+..++..+...+..++++.++.+|+.++++.+++.+...... +....+..+.|+++||+|+|++++ ++
T Consensus       273 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~-~v  350 (529)
T TIGR02868       273 LAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA-AGALGLGKPTLELRDLSFGYPGSP-PV  350 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC-CcccCCCCceEEEEEEEEecCCCC-ce
Confidence            9999999888999999999999999999999999999998765422110000 000112235699999999997543 59


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||++++||++||+||||||||||+++|+|+|+|++|+|++||+|++++ .+++|++|+||||+|++|++||+|||.
T Consensus       351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~  429 (529)
T TIGR02868       351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLR  429 (529)
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999999999999998


Q ss_pred             cC-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          318 PL-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       318 ~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ++ ++.++++++++++.+++++++.++|+|+||.+||+|.+||||||||++||||++++|++||||||||+||+++|+.+
T Consensus       430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I  509 (529)
T TIGR02868       430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESEL  509 (529)
T ss_pred             ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            75 46789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccCh
Q 044927          397 QRIIREEFPGSTVITVAHRV  416 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l  416 (467)
                      ++.+++..+++|+|+||||+
T Consensus       510 ~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       510 LEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHhcCCCEEEEEecCC
Confidence            99999988899999999995

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=5e-74  Score=614.78  Aligned_cols=436  Identities=19%  Similarity=0.247  Sum_probs=357.9

Q ss_pred             chhcccHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            2 LQVSSDMSTMDFDLPS-AISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +++++|++.++.++.. .+..++..++.++ .++++++++|+++++++..+++.+++...+.+..++..+...+..+++.
T Consensus       102 ~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~  180 (544)
T TIGR01842       102 LQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRAN  180 (544)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            5788999999988877 4555555555444 4567889999998776544444444444444444444445556677888


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.............++..+...++.++  .....|.+++|.+
T Consensus       181 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l  260 (544)
T TIGR01842       181 NLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMM  260 (544)
T ss_pred             hHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999888877666554443333333332223222222222222  1234588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .+++.+...+..|+..+...+..++.+..+.+|+.++++.+++.+.   ....+   +..+.++++||+|+|+++.+++|
T Consensus       261 ~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l  334 (544)
T TIGR01842       261 IAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTL  334 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCcccc
Confidence            9999999999999999999999999999999999999986544321   11111   12346999999999975545699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++++||||+|++|++|++||+.+
T Consensus       335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~  414 (544)
T TIGR01842       335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR  414 (544)
T ss_pred             ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      .. ..++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++|++||||||||+||+++++.+.
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~  494 (544)
T TIGR01842       415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA  494 (544)
T ss_pred             cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHH
Confidence            44 47889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927          398 RIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       398 ~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +.+++.. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus       495 ~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       495 NAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             HHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence            9999875 6899999999999998999999999999999999999864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-74  Score=583.97  Aligned_cols=372  Identities=28%  Similarity=0.397  Sum_probs=315.0

Q ss_pred             ccccHHHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----H
Q 044927           75 TKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL-IV-----L  148 (467)
Q Consensus        75 ~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~  148 (467)
                      +.......+.|++.+.++||.||.|++..++|.....+..+...+...   ++. ++.+.+.+++.+.... ++     .
T Consensus       209 Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~---sl~-~lnfgQ~~iFsv~~~~im~l~~~gi  284 (591)
T KOG0057|consen  209 ADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSS---SLA-FLNFGQKAIFSVALTFIMVLGSNGI  284 (591)
T ss_pred             hhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHh---HHH-HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            334456788999999999999999999999999888776665443332   222 2334444433222211 11     1


Q ss_pred             hCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEE
Q 044927          149 LPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKV  228 (467)
Q Consensus       149 ~~~~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~  228 (467)
                      ..+.++.|.+.....+..++..++..+...+..+.++...+.-++...+.....   .+.  +.+....++.|+|+||+|
T Consensus       285 ~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i---~~~--~~~i~~~~~~I~F~dV~f  359 (591)
T KOG0057|consen  285 AAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDI---QEA--ALPIELFGGSIEFDDVHF  359 (591)
T ss_pred             hhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhh---hhc--cCCcccCCCcEEEEeeEE
Confidence            236788999888888889999999999999999988888877766544321111   111  111112456799999999


Q ss_pred             EeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927          229 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF  308 (467)
Q Consensus       229 ~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf  308 (467)
                      .|+++ +++|+++||+|++||++||||+|||||||++|+|+||++ ++|+|++||+|+++++.+.+|+.|||||||..||
T Consensus       360 ~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF  437 (591)
T KOG0057|consen  360 SYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF  437 (591)
T ss_pred             EeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccccc
Confidence            99865 459999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCC
Q 044927          309 RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS  387 (467)
Q Consensus       309 ~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~  387 (467)
                      ++||..||.++. ..+++++.++|++++++|.+.++|+||+|.+||+|..|||||||||+||||+++||||+++|||||+
T Consensus       438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~  517 (591)
T KOG0057|consen  438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSA  517 (591)
T ss_pred             chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccc
Confidence            999999998764 6899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927          388 IDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR  457 (467)
Q Consensus       388 LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~  457 (467)
                      ||.+||+.+.+.+.+...++|+|+|.||+++++.||+|+++++|++.+.|+|+||++..+.|+++|..+.
T Consensus       518 LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~  587 (591)
T KOG0057|consen  518 LDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT  587 (591)
T ss_pred             cchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence            9999999999999998889999999999999999999999999999999999999998888888886543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=7.3e-74  Score=612.02  Aligned_cols=423  Identities=21%  Similarity=0.282  Sum_probs=352.5

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.+++.+...+..++..++.++++++++++++|+++++++..+++..++...+.+..++..+...+..+++.
T Consensus       104 ~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (529)
T TIGR02857       104 ATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLS  183 (529)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999899999999888889999999999988776555544444444444444444444555667788


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       184 ~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~  263 (529)
T TIGR02857       184 GHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATG  263 (529)
T ss_pred             HHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999888777666554444444443333333333322221111  1223588999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .++..|+..+..|+..+...+..++.+..+.+|+.++++.+++...   ....+  .+..+.|+++||+|+|+++.+++|
T Consensus       264 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~~~~--~~~~~~i~~~~v~f~y~~~~~~il  338 (529)
T TIGR02857       264 LFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KAPVT--AAPAPSLEFSGLSVAYPGRRAPAL  338 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcCCC--CCCCCeEEEEEEEEECCCCCcccc
Confidence            8888888889999999999999999999999999999975432211   11111  112347999999999976555699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++++||||+|++|++|++||+.+
T Consensus       339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~  418 (529)
T TIGR02857       339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL  418 (529)
T ss_pred             cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C-CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 L-GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      . +..++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.
T Consensus       419 ~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~  498 (529)
T TIGR02857       419 ARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVT  498 (529)
T ss_pred             cCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence            5 357889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl  428 (467)
                      +.+++..+++|+|+||||+++++.||+|++|
T Consensus       499 ~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       499 EALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             HHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            9999987899999999999999999999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-74  Score=566.75  Aligned_cols=440  Identities=22%  Similarity=0.337  Sum_probs=364.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHch
Q 044927           11 MDFDLPSAISLSAAATTDVFIIISVM-ASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQG   89 (467)
Q Consensus        11 v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g   89 (467)
                      ++..+...+...+..++-+....+++ ..++||++++++..++++.++...........++...++.+..++...|++-+
T Consensus        52 I~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLln  131 (497)
T COG5265          52 IETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLN  131 (497)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhh
Confidence            44555555555666665555444444 46799999888777766665432222211222223334556777888999999


Q ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHHHHHHHHHHH
Q 044927           90 VVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFVGLSLSYALT  167 (467)
Q Consensus        90 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~  167 (467)
                      .+++|.|+.|+.+..+|.+..+.+.++..+......|+.+....+...........  .-+..|.++.|.++....+..+
T Consensus       132 fEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~q  211 (497)
T COG5265         132 FETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQ  211 (497)
T ss_pred             hhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhh
Confidence            99999999999999999999888888776655555555543333222221111111  1123488999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCC-CCcccEEEEeEEEEeCCCCCceecceeEEEe
Q 044927          168 LSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASW-PSHGRIELEDLKVRYRPNTPLVLKGITCTFK  246 (467)
Q Consensus       168 l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~  246 (467)
                      +..|+..++..+.++.++....++.+++++.+.+....++   .++-+ ...+.+.|+||+|.|.+. +++|+++||+++
T Consensus       212 ls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pd---a~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~  287 (497)
T COG5265         212 LSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPD---APPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIP  287 (497)
T ss_pred             hhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCC---CccccccccceEEEEEEEeecccc-chhhcCcccccc
Confidence            9999999999999999999999999999987654332211   11122 235679999999999865 469999999999


Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC-CCCHH
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDN  325 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~  325 (467)
                      +|+++|+|||||+||||++++|.|||++++|.|.+||+|+.+...+.+|+.||.||||..||++|+..|+.+++ ..+++
T Consensus       288 ~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~e  367 (497)
T COG5265         288 LGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAE  367 (497)
T ss_pred             CccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998764 68999


Q ss_pred             HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC
Q 044927          326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP  405 (467)
Q Consensus       326 ~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~  405 (467)
                      +++.+++.+++++++..+|+||+|.|||+|-.||||||||++|||+++++|+||+|||+||+||.+||+.|+..|++..+
T Consensus       368 ev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~  447 (497)
T COG5265         368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA  447 (497)
T ss_pred             HHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927          406 GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA  454 (467)
Q Consensus       406 ~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~  454 (467)
                      |+|.++|+||++++.+||.|+||++|+|+|.|+|+||++.+|.|++||.
T Consensus       448 ~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~  496 (497)
T COG5265         448 GRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR  496 (497)
T ss_pred             CCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence            9999999999999999999999999999999999999999999999985

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=5.1e-71  Score=640.23  Aligned_cols=451  Identities=17%  Similarity=0.237  Sum_probs=364.3

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN   81 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (467)
                      +|+++|++.++..+...+..++..++++++.++++++++|+++++++.++++.+++...+.+..+...+......+...+
T Consensus       158 s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1466)
T PTZ00265        158 SDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMS  237 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999877777766666666666555555555556678899


Q ss_pred             HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCC--------
Q 044927           82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPG--------  151 (467)
Q Consensus        82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------  151 (467)
                      .+.|+++|+++||+|+.|+++.++|.+..+...+...+......+......++..+..+++.++.  .+..|        
T Consensus       238 ~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~  317 (1466)
T PTZ00265        238 IIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNN  317 (1466)
T ss_pred             HHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Confidence            99999999999999999999999998877776665555444433333333332222222222221  11222        


Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeC
Q 044927          152 KHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYR  231 (467)
Q Consensus       152 ~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~  231 (467)
                      .+++|.+.+++.+.......+..+...+..++.+.++.+|+.++++.+++.+.. .....   .+..+.|+++||+|+|+
T Consensus       318 ~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~~~---~~~~~~I~~~nVsf~Y~  393 (1466)
T PTZ00265        318 DFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DDGKK---LKDIKKIQFKNVRFHYD  393 (1466)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCcc---CCCCCcEEEEEEEEEcC
Confidence            356665555444333323333344556678899999999999999876543211 11111   11123699999999997


Q ss_pred             CCC-CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE-cCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927          232 PNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-DGLDICSMGLKDLRTKLSIIPQEPTLFR  309 (467)
Q Consensus       232 ~~~-~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~  309 (467)
                      +.. .++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++ ||.++.+++..++|++||||||+|.+|+
T Consensus       394 ~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~  473 (1466)
T PTZ00265        394 TRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS  473 (1466)
T ss_pred             CCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh
Confidence            532 36999999999999999999999999999999999999999999999 5799999999999999999999999999


Q ss_pred             ccHHHhcCcCC----------------------------------------------------------CCCHHHHHHHH
Q 044927          310 GSVRTNLDPLG----------------------------------------------------------MYSDNEIWEAM  331 (467)
Q Consensus       310 ~tv~enl~~~~----------------------------------------------------------~~~~~~~~~~~  331 (467)
                      +||+|||.++.                                                          ..+++++++++
T Consensus       474 ~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~  553 (1466)
T PTZ00265        474 NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS  553 (1466)
T ss_pred             ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHH
Confidence            99999997531                                                          13567899999


Q ss_pred             HHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceE
Q 044927          332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTV  409 (467)
Q Consensus       332 ~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tv  409 (467)
                      +.+++++++.++|+||||.+|++|.+||||||||++|||||+++|+|||||||||+||+.+++.+++.|++..  +|+|+
T Consensus       554 ~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~Tv  633 (1466)
T PTZ00265        554 KKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT  633 (1466)
T ss_pred             HHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999875  48999


Q ss_pred             EEEccChhHHhhcCEEEEEeCC-----------------------------------------------EEEEecChhhH
Q 044927          410 ITVAHRVPTITDSDMFMVLSYG-----------------------------------------------ELVEYDLPSKL  442 (467)
Q Consensus       410 i~itH~l~~~~~~d~i~vl~~G-----------------------------------------------~iv~~g~~~~l  442 (467)
                      |+||||+++++.||+|++|++|                                               +|+|+|+|+||
T Consensus       634 IiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L  713 (1466)
T PTZ00265        634 IIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDAL  713 (1466)
T ss_pred             EEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHH
Confidence            9999999999999999999986                                               59999999999


Q ss_pred             hc-cCchHHHHHHHH
Q 044927          443 ME-TNSAFSKLVAEY  456 (467)
Q Consensus       443 ~~-~~~~~~~l~~~~  456 (467)
                      ++ .+|.|+.|++.+
T Consensus       714 ~~~~~g~y~~l~~~q  728 (1466)
T PTZ00265        714 MKNKNGIYYTMINNQ  728 (1466)
T ss_pred             HhccCCcHHHHHhhh
Confidence            98 699999999655

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=7.1e-69  Score=575.63  Aligned_cols=427  Identities=18%  Similarity=0.172  Sum_probs=335.4

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++.. +..++.+++.+++.++++++++|+++++++.++++.+++..++.++.++..+...+..+.+.
T Consensus       113 ~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (555)
T TIGR01194       113 IPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFN  191 (555)
T ss_pred             hHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            47999999999998864 77888888888889999999999998887665555554444444444444444555667889


Q ss_pred             HHHHHHHchHHHHHHccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMD--MFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|++++|+|+.++  ...+++.+..++..+.................++..+...+..++ ....+.++.|.+
T Consensus       192 ~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~g~l  270 (555)
T TIGR01194       192 EHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFA-AAMFASIDAAAI  270 (555)
T ss_pred             HHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHH
Confidence            99999999999999999954  445566665555544433222221111111111111111111111 112267899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC---ccCCCC--CCCCCCcccEEEEeEEEEeCCC
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAI---IEETKP--PASWPSHGRIELEDLKVRYRPN  233 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~i~~~~vs~~y~~~  233 (467)
                      .+++.|...+..|+..+.+.+..++++.++.+|+.++++.+++++..   .+....  .......+.|+++||+|+|++.
T Consensus       271 ~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~  350 (555)
T TIGR01194       271 SAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP  350 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCC
Confidence            99999999999999999999999999999999999998642221110   000000  0001123579999999999753


Q ss_pred             ---CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc
Q 044927          234 ---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG  310 (467)
Q Consensus       234 ---~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~  310 (467)
                         .+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|++||.++.+++..++|++++||+|++++|++
T Consensus       351 ~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~  430 (555)
T TIGR01194       351 EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD  430 (555)
T ss_pred             CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh
Confidence               23599999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927          311 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS  390 (467)
Q Consensus       311 tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~  390 (467)
                      |+++|..  +..++++++++++.+++++++.++|+|+||.     .+||||||||++||||++++|++||||||||+||+
T Consensus       431 ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~  503 (555)
T TIGR01194       431 LIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDP  503 (555)
T ss_pred             hhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence            9999963  3567888999999999999999999999995     78999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HH-CCCceEEEEccChhHHhhcCEEEEEeCCEEEEe
Q 044927          391 ATDAILQRIIR-EE-FPGSTVITVAHRVPTITDSDMFMVLSYGELVEY  436 (467)
Q Consensus       391 ~~~~~i~~~l~-~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~  436 (467)
                      ++++.+.+.+. .. .+++|+|+||||+++++.||+|++|++|++++.
T Consensus       504 ~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            99999988764 33 468999999999999999999999999999875

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=8.3e-68  Score=618.08  Aligned_cols=438  Identities=18%  Similarity=0.247  Sum_probs=338.0

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +|++++|++.++... ..+..++...+.+++++++++..-.+.+++.++++++...+...+.+..++..+...+..+++.
T Consensus       401 ~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~  479 (1495)
T PLN03232        401 TNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRV  479 (1495)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999986 4566666665555554444332110111111111122212223333334444444455666788


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL  160 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  160 (467)
                      +.+.|.++|+++||.|++|+.+.+++.+..++..+...+......+..........++..+......+..+.+++|.+.+
T Consensus       480 ~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~  559 (1495)
T PLN03232        480 GIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFT  559 (1495)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            89999999999999999999999999887777666544443332222221111111111111111223457899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCceec
Q 044927          161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLVLK  239 (467)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~L~  239 (467)
                      ++.+...+..|+..++..+..+.++.++++|+.++++.+++...   ...+.  .+..+.|+++|++|+|++. .+++|+
T Consensus       560 ~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~---~~~~~--~~~~~~I~~~~vsF~y~~~~~~~vL~  634 (1495)
T PLN03232        560 SLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA---QNPPL--QPGAPAISIKNGYFSWDSKTSKPTLS  634 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---ccCCc--CCCCCcEEEEeeEEEcCCCCCCceee
Confidence            99999999999999999999999999999999999986543211   10010  1123469999999999753 356999


Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL  319 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~  319 (467)
                      |+||+|++||+++|+||||||||||+++|+|+++|++|.+.            .+|++|+||||+|++|++||+|||.++
T Consensus       635 ~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg  702 (1495)
T PLN03232        635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFG  702 (1495)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcC
Confidence            99999999999999999999999999999999999998763            357799999999999999999999987


Q ss_pred             CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH
Q 044927          320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI  399 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~  399 (467)
                      ..+++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.
T Consensus       703 ~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~  782 (1495)
T PLN03232        703 SDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS  782 (1495)
T ss_pred             CccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999888654


Q ss_pred             -HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          400 -IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       400 -l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                       ++...+++|+|+||||++.+..||+|++|++|+|++.|+|+|+++.++.|.++++.+
T Consensus       783 ~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~  840 (1495)
T PLN03232        783 CMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA  840 (1495)
T ss_pred             HhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhc
Confidence             565667899999999999999999999999999999999999999888898887654

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.9e-67  Score=615.63  Aligned_cols=437  Identities=17%  Similarity=0.253  Sum_probs=339.0

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +|++++|++.++.++. .+..++...+.+++++++++..-.+.+++.++++++...+...+.+..++..+...+...++.
T Consensus       401 vnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~  479 (1622)
T PLN03130        401 TNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRI  479 (1622)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3688999999999874 466666666666655555443222222222222222222333333333444444445667788


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL  160 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  160 (467)
                      +.+.|.++|+++||.|++|+.+.+++.+..++..+...+......+..........++..+......+..+.+++|.+.+
T Consensus       480 ~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~  559 (1622)
T PLN03130        480 GLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFT  559 (1622)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            99999999999999999999999999887776555433333222222211111111111111111223457899999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCceec
Q 044927          161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLVLK  239 (467)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~L~  239 (467)
                      ++.+...+..|+..++..+..+.++.++++|+.++++.++..+.   ...+.  .+..+.|+++|++|+|++. .+++|+
T Consensus       560 ~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~---~~~~~--~~~~~~I~~~nvsf~y~~~~~~~vL~  634 (1622)
T PLN03130        560 SLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL---PNPPL--EPGLPAISIKNGYFSWDSKAERPTLS  634 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc---cCCcc--cCCCCceEEEeeEEEccCCCCCceee
Confidence            88888888889989999999999999999999999976543211   00000  0112469999999999743 356899


Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      |+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+             |++|+||+|+|++|++||+|||.+
T Consensus       635 ~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIreNI~f  701 (1622)
T PLN03130        635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILF  701 (1622)
T ss_pred             ceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHHHHHhC
Confidence            9999999999999999999999999999999999999 99974             458999999999999999999998


Q ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH-
Q 044927          319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ-  397 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~-  397 (467)
                      +..+++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.+. 
T Consensus       702 g~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~  781 (1622)
T PLN03130        702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD  781 (1622)
T ss_pred             CCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence            7778889999999999999999999999999999999999999999999999999999999999999999999988775 


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      +.++...+++|+|+|||+++.+..||+|++|++|+|++.|+|+|+++.++.|.++.+..
T Consensus       782 ~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~  840 (1622)
T PLN03130        782 KCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA  840 (1622)
T ss_pred             HHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhc
Confidence            55666667899999999999999999999999999999999999998888898887654

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=2.7e-68  Score=532.91  Aligned_cols=434  Identities=20%  Similarity=0.270  Sum_probs=345.4

Q ss_pred             cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Q 044927            5 SSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAA   84 (467)
Q Consensus         5 t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (467)
                      -+|.+++..|++..-...+-..--+-+++.++|.++||+.++.+.-.++.+.+...-....++-.+...+.....+++..
T Consensus       123 LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~  202 (580)
T COG4618         123 LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLAD  202 (580)
T ss_pred             hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            36888898888764333333333345567778888999877654433333222222222222223333345556677888


Q ss_pred             HHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHHHHHH
Q 044927           85 ETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFVGLSL  162 (467)
Q Consensus        85 e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~  162 (467)
                      -+.++.++|++.|+.....++|.+....+........-....+......+-.+....+..+  ++.+.+++|+|.+.+..
T Consensus       203 a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~S  282 (580)
T COG4618         203 ATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGS  282 (580)
T ss_pred             HHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHH
Confidence            9999999999999999998888877766655443333222223222222222222222222  12245899999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceeccee
Q 044927          163 SYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGIT  242 (467)
Q Consensus       163 ~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~is  242 (467)
                      ..+.....|+......+.++..++.|++|+.++++..++...   .-..|   .+.+.+.++++++.-++.++++|+++|
T Consensus       283 Il~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~m~LP---~P~g~L~Ve~l~~~PPg~~~pil~~is  356 (580)
T COG4618         283 ILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---RMPLP---APQGALSVERLTAAPPGQKKPILKGIS  356 (580)
T ss_pred             HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---CCCCC---CCCceeeEeeeeecCCCCCCcceecce
Confidence            777777788888888889999999999999999975443221   11111   235789999999988777788999999


Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC-CC
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL-GM  321 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~-~~  321 (467)
                      |++++||.+|||||||||||||.|+|.|.++|.+|.|++||-+++.++.+++-++|||+||+..||+|||.|||+-+ ++
T Consensus       357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~  436 (580)
T COG4618         357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE  436 (580)
T ss_pred             eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999744 47


Q ss_pred             CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHH
Q 044927          322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR  401 (467)
Q Consensus       322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~  401 (467)
                      .+++++.++++.++.||.|.++|+||||.+|+.|..|||||||||+|||||+.||.+++||||-|+||.+.|+.+.++|.
T Consensus       437 ~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~  516 (580)
T COG4618         437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL  516 (580)
T ss_pred             CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HH-CCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927          402 EE-FPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       402 ~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +. .+|.|+|+||||++.+..+|+|++|++|++-.+|+.+|+++
T Consensus       517 ~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa  560 (580)
T COG4618         517 AAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA  560 (580)
T ss_pred             HHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence            85 46999999999999999999999999999999999999885

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=1.6e-64  Score=541.55  Aligned_cols=417  Identities=17%  Similarity=0.162  Sum_probs=313.0

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.+...+. .+..++.+++.++++++++++++|++++++++++++.+++..++.++.++..+...+..+++.
T Consensus       108 lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  186 (547)
T PRK10522        108 LASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLY  186 (547)
T ss_pred             HHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999988765 467788888999999999999999999887776666655555555555555555556778899


Q ss_pred             HHHHHHHchHHHHHHccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccH
Q 044927           81 NFAAETSQGVVSIRAFKMM---DMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLL--PGKHLP  155 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  155 (467)
                      +.+.|.++|+++++ ++.+   +.+.+++.+..++..+...+..............+..   .+.+++.+..  .+....
T Consensus       187 ~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  262 (547)
T PRK10522        187 NDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMML---GAIGLVFYMANSLGWADT  262 (547)
T ss_pred             HHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCh
Confidence            99999999999996 4443   3456666665555443332222111111111111111   1111111111  111233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCC
Q 044927          156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTP  235 (467)
Q Consensus       156 g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~  235 (467)
                      +...++..+...+..|+..+...+..++.+..+.+|+.++++.+++.+.  ... .+  .+..+.++++||+|+|+++ +
T Consensus       263 ~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~~-~~--~~~~~~i~~~~v~f~y~~~-~  336 (547)
T PRK10522        263 NVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PRP-QA--FPDWQTLELRNVTFAYQDN-G  336 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--ccc-cc--cCcCceEEEEEEEEEeCCC-C
Confidence            3333333344446678888888889999999999999998765433211  011 11  1112469999999999743 4


Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      ++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||+++++++..++|++++||||++++|++|+++|
T Consensus       337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n  416 (547)
T PRK10522        337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE  416 (547)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927          316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI  395 (467)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~  395 (467)
                         ....++++++++++.+++.+.+.. ++|.     .+|.+||||||||++||||++++|++||||||||+||+++++.
T Consensus       417 ---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~  487 (547)
T PRK10522        417 ---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE  487 (547)
T ss_pred             ---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence               234567778878888777665542 3332     1478999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927          396 LQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       396 i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g  437 (467)
                      +.+.+.+..  +++|+|+||||++.++.||+|++|++|++++..
T Consensus       488 i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        488 FYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             HHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence            999987643  489999999999999999999999999999873

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.7e-62  Score=548.88  Aligned_cols=437  Identities=20%  Similarity=0.304  Sum_probs=347.5

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +|-++.|++.++++.. .+..+..+.+.+++++.+++..--+-+++.+.++++++-+.....+...+.+........++.
T Consensus       302 vNlms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Ri  380 (1381)
T KOG0054|consen  302 VNLMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERI  380 (1381)
T ss_pred             hhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            3668999999988765 456777777777777666653322223333333333333444444444444444455667788


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccHHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV-LLPGKHLPGFVG  159 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~  159 (467)
                      ...+|.++||++||.|++|+.|.++..+..++..+...+.................++.++.....+ ...+..++..+.
T Consensus       381 k~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF  460 (1381)
T KOG0054|consen  381 KLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAF  460 (1381)
T ss_pred             HHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHH
Confidence            8999999999999999999999999988888777665555444444433333333333333333322 223556776777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCcee
Q 044927          160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLVL  238 (467)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~L  238 (467)
                      ..+++...+..|+..++..+..+.++.+|++|+.+++..++..+.....   ....+....++++|.+|++++. ..+.|
T Consensus       461 ~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL  537 (1381)
T KOG0054|consen  461 TSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTL  537 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccc
Confidence            7788888888899999999999999999999999999865443221110   1111234469999999999753 34589


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +||||+|++|+.+|||||.|||||||+.+|+|..+..+|++.++|             .++||||+||+|+|||||||.|
T Consensus       538 ~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILF  604 (1381)
T KOG0054|consen  538 KDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILF  604 (1381)
T ss_pred             cceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhc
Confidence            999999999999999999999999999999999999999999999             3999999999999999999998


Q ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH-H
Q 044927          319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL-Q  397 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i-~  397 (467)
                      +..+++++.+++++.|+|+++++.+|.|..|.+||+|.+|||||||||+||||+++|++|++||+|.|++|.++.+.+ .
T Consensus       605 G~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~  684 (1381)
T KOG0054|consen  605 GSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFE  684 (1381)
T ss_pred             CccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHH
Confidence            888999999999999999999999999999999999999999999999999999999999999999999999986655 4


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA  454 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~  454 (467)
                      +.++...++||+|++||.++.++.||+|++|++|+|++.|+++|+++.++.|.++..
T Consensus       685 ~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~  741 (1381)
T KOG0054|consen  685 ECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAH  741 (1381)
T ss_pred             HHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhh
Confidence            566667789999999999999999999999999999999999999998888888743

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=6.3e-62  Score=569.45  Aligned_cols=440  Identities=18%  Similarity=0.253  Sum_probs=332.8

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +|++++|++.+.... ..+..++...+.+++++++++..-.+.+++.+.+++++..+...+.+..++..+...+...+..
T Consensus       418 ~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~  496 (1522)
T TIGR00957       418 VNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRI  496 (1522)
T ss_pred             HHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368899999988755 4566666666666655555443222222222222222222222233333334444444566778


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLL--PGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~  158 (467)
                      +.+.|.++|+++||.|++|+.+.+++++..++..+...+......+..........++..++.....+.  .+.++.+.+
T Consensus       497 ~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~  576 (1522)
T TIGR00957       497 KLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKA  576 (1522)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence            899999999999999999999999998887766554333222222211111111111111111111222  245677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      ..++.+...+..|+..++..+..+.++.++.+|+.++++.+++.+...... .. .....+.++++|++|+|+++.+++|
T Consensus       577 f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~-~~-~~~~~~~i~~~~~~~~~~~~~~~~l  654 (1522)
T TIGR00957       577 FVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERR-TI-KPGEGNSITVHNATFTWARDLPPTL  654 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc-cc-CCCCCCcEEEEEeEEEcCCCCCcee
Confidence            777777777888999999999999999999999999998654322110000 00 0011236999999999975445699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|             +|+||||+|++|++||+|||.+
T Consensus       655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~  721 (1522)
T TIGR00957       655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILF  721 (1522)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhc
Confidence            999999999999999999999999999999999999999999987             5999999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927          319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR  398 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~  398 (467)
                      +..+++++..++++.|++.+++..+|+|++|.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+
T Consensus       722 g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~  801 (1522)
T TIGR00957       722 GKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE  801 (1522)
T ss_pred             CCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence            65567778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH---HCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          399 IIRE---EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       399 ~l~~---~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      .+.+   ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+.++.|.++...+
T Consensus       802 ~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~  862 (1522)
T TIGR00957       802 HVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY  862 (1522)
T ss_pred             HHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence            8863   356899999999999999999999999999999999999998888888887643

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=9.5e-61  Score=520.50  Aligned_cols=414  Identities=13%  Similarity=0.091  Sum_probs=335.6

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMAS-VTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPI   79 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (467)
                      ++|+++|++.+...+...+..++..++.++++++.++. ++|.++++++...++..++.+++.++..+..+..++..+.+
T Consensus       198 ~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  277 (659)
T TIGR00954       198 DQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEY  277 (659)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence            47999999999999999999999999999988888886 99999888877777777888888888777877778888999


Q ss_pred             HHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHh-C----
Q 044927           80 VNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLI-ILT---AALLIVLL-P----  150 (467)
Q Consensus        80 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~-~----  150 (467)
                      .+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+......+......++...+ ..+   .....++. .    
T Consensus       278 ~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~  357 (659)
T TIGR00954       278 RYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAF  357 (659)
T ss_pred             HHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            99999999999999999999999999988888877766666555555555444443211 111   11111121 1    


Q ss_pred             CCccHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-------CCccCCC---------
Q 044927          151 GKHLPGFVGL-SLSY---ALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPP-------AIIEETK---------  210 (467)
Q Consensus       151 ~~~~~g~~~~-~~~~---~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~-------~~~~~~~---------  210 (467)
                      |.++.|.... ++.|   +..+..++..+...+..++++.++.+|+.++++.+++..       ...+...         
T Consensus       358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (659)
T TIGR00954       358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN  437 (659)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            5677776544 4444   456678888899999999999999999999997532210       0000000         


Q ss_pred             --C--CCCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 044927          211 --P--PASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI  286 (467)
Q Consensus       211 --~--~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i  286 (467)
                        +  .......+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++   
T Consensus       438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---  513 (659)
T TIGR00954       438 LVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---  513 (659)
T ss_pred             ccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---
Confidence              0  0000123469999999999643 3599999999999999999999999999999999999999999998864   


Q ss_pred             CCCCHHHHhcccEEEcCCCccccccHHHhcCcC--------CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927          287 CSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW  358 (467)
Q Consensus       287 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L  358 (467)
                              |++++||||+|++|++|++||+.+.        ...++++++++++.+++++++++ |.|+||..+ .+.+|
T Consensus       514 --------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~L  583 (659)
T TIGR00954       514 --------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVL  583 (659)
T ss_pred             --------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCC
Confidence                    5689999999999999999999753        12456788999999999999988 899999876 57799


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      |||||||++||||++++|+++|||||||+||+++++.+.+.+++.  ++|+|+||||++.++.||++++|+.
T Consensus       584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            999999999999999999999999999999999999999999874  8999999999999999999999973

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.5e-59  Score=548.06  Aligned_cols=430  Identities=17%  Similarity=0.232  Sum_probs=331.3

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +|++++|++.+...+... ..++...+.+++++++++....+.+++.+.++++++.+..++.+...+..+.......++.
T Consensus       182 ~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~  260 (1490)
T TIGR01271       182 VSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERL  260 (1490)
T ss_pred             HHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999977654 4566666666666666665555555554444444444444444444445555555667788


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL  160 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  160 (467)
                      +.+.|.++|+++||.|++|+.|.+++.+..+...+...+......+..........++..++..... +.+..+++.+.+
T Consensus       261 ~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~-~~~~~~~~~~ft  339 (1490)
T TIGR01271       261 AITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYA-LIKGIILRRIFT  339 (1490)
T ss_pred             HHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcHHHHHH
Confidence            9999999999999999999999999988887766654443333222222111111111111111111 223356676666


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC------
Q 044927          161 SLSYALTLSSIQ-VIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN------  233 (467)
Q Consensus       161 ~~~~~~~l~~~~-~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~------  233 (467)
                      +++++..+..++ ..++..+..+.++.+|++||.+++..++..+.   .  ..   .....++++|++|.|+..      
T Consensus       340 ~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~---~--~~---~~~~~i~~~~~~f~~~~~~~~~~~  411 (1490)
T TIGR01271       340 TISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL---E--YN---LTTTEVEMVNVTASWDEGIGELFE  411 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc---c--cc---CCCCceEEecceEecCCccccccc
Confidence            677776666565 46888889999999999999999976543211   0  00   012358888888888421      


Q ss_pred             --------------------------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927          234 --------------------------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC  287 (467)
Q Consensus       234 --------------------------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~  287 (467)
                                                .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|    
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----  487 (1490)
T TIGR01271       412 KIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----  487 (1490)
T ss_pred             cccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----
Confidence                                      13589999999999999999999999999999999999999999999998    


Q ss_pred             CCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          288 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       288 ~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                               +|+||||+|++|++||+|||.++..+++++..++++.|++.+++..+|.|++|.+|++|.+|||||||||+
T Consensus       488 ---------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~  558 (1490)
T TIGR01271       488 ---------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARIS  558 (1490)
T ss_pred             ---------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHH
Confidence                     49999999999999999999865555666777888999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRI-IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      ||||++++|+++|||||||+||+++++.+.+. +.+..+++|+|++||+++.+..||+|++|++|+|++.|+++++.+.+
T Consensus       559 lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~  638 (1490)
T TIGR01271       559 LARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR  638 (1490)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC
Confidence            99999999999999999999999999999874 66666799999999999999999999999999999999999998776


Q ss_pred             chHHHHH
Q 044927          447 SAFSKLV  453 (467)
Q Consensus       447 ~~~~~l~  453 (467)
                      +.|.+..
T Consensus       639 ~~~~~~~  645 (1490)
T TIGR01271       639 PDFSSLL  645 (1490)
T ss_pred             hHHHHHH
Confidence            6666655

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=6.9e-58  Score=534.57  Aligned_cols=440  Identities=18%  Similarity=0.252  Sum_probs=340.4

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +|.+++|++.+..++.. +..++...+.+++++++++.+..+.+++.++++++...+..+..+......+.......+..
T Consensus       347 ~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri  425 (1560)
T PTZ00243        347 INMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARV  425 (1560)
T ss_pred             HHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788999999998844 56777788888777777776666666665555555555555555555555555555677788


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGL  160 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  160 (467)
                      +...|.++|+++||.+++|+.|.+++.+..++..+...+......+..+.......++..++.+...+..+.++++.+++
T Consensus       426 ~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft  505 (1560)
T PTZ00243        426 KATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFP  505 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            89999999999999999999999999988777666544443333333322222222222222222233457899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----Ccc---------C--C------C-------C-
Q 044927          161 SLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPA----IIE---------E--T------K-------P-  211 (467)
Q Consensus       161 ~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~----~~~---------~--~------~-------~-  211 (467)
                      ++.++..+..|+..++..+..+.++.+|++||.++++.++....    ..+         .  .      .       + 
T Consensus       506 ~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (1560)
T PTZ00243        506 TIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPV  585 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999976531100    000         0  0      0       0 


Q ss_pred             --------------------------CCCCCCcccEEEEeEEEEeC----------------------------------
Q 044927          212 --------------------------PASWPSHGRIELEDLKVRYR----------------------------------  231 (467)
Q Consensus       212 --------------------------~~~~~~~~~i~~~~vs~~y~----------------------------------  231 (467)
                                                +......+.+.++|+++.++                                  
T Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1560)
T PTZ00243        586 KLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTD  665 (1560)
T ss_pred             cccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                      00000112466777776532                                  


Q ss_pred             ----CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcc
Q 044927          232 ----PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL  307 (467)
Q Consensus       232 ----~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l  307 (467)
                          .+.+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++             ++|||+||+|++
T Consensus       666 ~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l  732 (1560)
T PTZ00243        666 DFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWI  732 (1560)
T ss_pred             cccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCcc
Confidence                122458999999999999999999999999999999999999999999863             479999999999


Q ss_pred             ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCC
Q 044927          308 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS  387 (467)
Q Consensus       308 f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~  387 (467)
                      |++|++|||.++.....+++.++++.++++++++.+|+|++|.+|++|.+||||||||++||||++.+|+++|||||||+
T Consensus       733 ~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~sa  812 (1560)
T PTZ00243        733 MNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA  812 (1560)
T ss_pred             CCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence            99999999987554555677888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH-HHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927          388 IDSATDAILQRI-IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE  455 (467)
Q Consensus       388 LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~  455 (467)
                      ||+++.+.+.+. +....+++|+|++||+++.+..||+|++|++|++++.|+++++++. +.|.++...
T Consensus       813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~  880 (1560)
T PTZ00243        813 LDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE  880 (1560)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence            999988877654 4444468999999999999999999999999999999999999864 456666543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-57  Score=409.39  Aligned_cols=214  Identities=28%  Similarity=0.457  Sum_probs=192.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC-CCHHHHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-MGLKDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~-~~~~~~r~~i  298 (467)
                      .|+++||+++|++.  .+|+|||++|++||+++|+||||||||||+++|.||.+|++|+|.+||.++.. .+...+|+++
T Consensus         2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v   79 (240)
T COG1126           2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV   79 (240)
T ss_pred             eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence            48999999999743  49999999999999999999999999999999999999999999999987743 3677899999


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC----CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG----MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~----~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      |+|||+..||+- |+.||+...+    ..+.+    ...+.++++|+.+..+..|           .+||||||||+|||
T Consensus        80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA  148 (240)
T COG1126          80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA  148 (240)
T ss_pred             CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence            999999999975 9999996432    22333    3456788999999988888           78999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |||+.+|+++++|||||+|||+....+.+.++++. .|.|.|+|||.+..++. ||||++|++|+|+++|+|++++...
T Consensus       149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p  227 (240)
T COG1126         149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP  227 (240)
T ss_pred             HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence            99999999999999999999999999999999865 58999999999999997 9999999999999999999998753

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=1.3e-56  Score=438.50  Aligned_cols=237  Identities=37%  Similarity=0.673  Sum_probs=222.4

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      +.|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++..++|+.+
T Consensus         1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i   79 (275)
T cd03289           1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF   79 (275)
T ss_pred             CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence            3589999999997544569999999999999999999999999999999999998 789999999999999999999999


Q ss_pred             EEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       299 ~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      +|+||+|.+|++|+++|+.++...++++++++++.+++.+++.++|.++++.++++|.+||||||||++||||++++|+|
T Consensus        80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i  159 (275)
T cd03289          80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI  159 (275)
T ss_pred             EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999975555677899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      |||||||++||+.+++.+++.|++...++|+|+||||++.+..||||++|++|++++.|+|+++++..+.|++++...
T Consensus       160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~  237 (275)
T cd03289         160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS  237 (275)
T ss_pred             EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence            999999999999999999999998777899999999999998999999999999999999999999778888887643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-54  Score=400.97  Aligned_cols=213  Identities=31%  Similarity=0.489  Sum_probs=193.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+|+|||++|.+  +.+++|+||+|++||++.++|||||||||++|+|.|+++|++|+|++||.++++++..++|++|||
T Consensus         2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY   79 (309)
T COG1125           2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY   79 (309)
T ss_pred             ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence            799999999973  459999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChH--HHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~--~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |-|..-||+. ||.|||...+   ..+.    +++.+.++.++++  ++.++.|           .+|||||+|||.+||
T Consensus        80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R  148 (309)
T COG1125          80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR  148 (309)
T ss_pred             hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence            9999999975 9999997432   2333    4566788888885  4788888           789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      ||+.+|+++++|||+++|||.++..+++.+.++.+  ++|+|+|||+++++- .+|||.+|++|+|+..++|+++++..
T Consensus       149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P  227 (309)
T COG1125         149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP  227 (309)
T ss_pred             HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence            99999999999999999999999999999987543  899999999999765 59999999999999999999999754

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-54  Score=409.94  Aligned_cols=215  Identities=27%  Similarity=0.441  Sum_probs=192.8

Q ss_pred             EEEEeEEEEeCCC---CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHH
Q 044927          221 IELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDL  294 (467)
Q Consensus       221 i~~~~vs~~y~~~---~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~  294 (467)
                      |++++||+.|+.+   ...+|+|+||+|++||++||+|+||||||||++++.+|-.|++|+|.+||+++..++.   +.+
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~   81 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL   81 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence            7999999999752   2468999999999999999999999999999999999999999999999999888765   456


Q ss_pred             hcccEEEcCCCcccc-ccHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          295 RTKLSIIPQEPTLFR-GSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~-~tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      |++||++||++.|++ .||.+|+.+.   ...+.    +++.+.++.+|+.+..++.|           .+|||||||||
T Consensus        82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV  150 (339)
T COG1135          82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV  150 (339)
T ss_pred             HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence            889999999999997 6999999752   12333    34567888999998888887           88999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +|||||+.+|+||+.|||||+|||+|.+.|.+.|++..  -|-|+++|||.|+.++. |||+.||++|+++|.|+..+++
T Consensus       151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF  230 (339)
T COG1135         151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF  230 (339)
T ss_pred             HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence            99999999999999999999999999999999998853  48999999999999997 9999999999999999999998


Q ss_pred             ccC
Q 044927          444 ETN  446 (467)
Q Consensus       444 ~~~  446 (467)
                      ..+
T Consensus       231 ~~P  233 (339)
T COG1135         231 ANP  233 (339)
T ss_pred             cCc
Confidence            743

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=3.1e-52  Score=400.64  Aligned_cols=234  Identities=35%  Similarity=0.578  Sum_probs=212.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV   80 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence            47899999996434569999999999999999999999999999999999999999999999999887777778889999


Q ss_pred             EcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      +||++.+|+.|+.||+.+.. ....+++.+.++..++.+++..+|.|+++..+..+.+||||||||++||||++.+|+++
T Consensus        81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  160 (237)
T cd03252          81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL  160 (237)
T ss_pred             EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence            99999999899999997532 23455666777888999999999999999998999999999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927          380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA  454 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~  454 (467)
                      ||||||++||+.++..+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+++++++..+.|..+++
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~  235 (237)
T cd03252         161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ  235 (237)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence            999999999999999999999998778999999999999988999999999999999999999887777776654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.7e-53  Score=382.15  Aligned_cols=218  Identities=26%  Similarity=0.414  Sum_probs=194.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-----cEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-----GRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~-----G~i~i~g~~i~~~--~~~  292 (467)
                      .++++|+++.|+.  +.+|+|||++|++++++|++|||||||||+++++.|+.+..+     |+|.++|+++.+.  +.-
T Consensus         7 ~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~   84 (253)
T COG1117           7 AIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV   84 (253)
T ss_pred             eeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence            5899999999974  349999999999999999999999999999999999998876     9999999999865  688


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCCC---C-C---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y-S---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~-~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      ++|+++|+|+|.|..|+.||+||+.++..   . +   ++-++++++.+.|++.+..       .+.+.+..|||||+||
T Consensus        85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR  157 (253)
T COG1117          85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR  157 (253)
T ss_pred             HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence            99999999999999999999999976422   1 1   3446778888988876543       2446678899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +||||||+-+|++|+||||||+|||.+..+|-+.|.+++++-|||+|||++..+.+ +|+..++..|+++|.|+.++++.
T Consensus       158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~  237 (253)
T COG1117         158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT  237 (253)
T ss_pred             HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence            99999999999999999999999999999999999999889999999999998766 89999999999999999999986


Q ss_pred             cC
Q 044927          445 TN  446 (467)
Q Consensus       445 ~~  446 (467)
                      ..
T Consensus       238 ~P  239 (253)
T COG1117         238 NP  239 (253)
T ss_pred             Cc
Confidence            54

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.2e-52  Score=398.91  Aligned_cols=213  Identities=30%  Similarity=0.460  Sum_probs=190.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++|+|+  ++++|+|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++|
T Consensus         2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia   79 (258)
T COG1120           2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA   79 (258)
T ss_pred             eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence            489999999996  346999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcc-ccccHHHhcCcCC--------CCCH---HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          300 IIPQEPTL-FRGSVRTNLDPLG--------MYSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       300 ~v~Q~~~l-f~~tv~enl~~~~--------~~~~---~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ||||++.. |.-||+|-+.+++        ..++   +.+.++++.+++.++.++.           ...||||||||+.
T Consensus        80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~  148 (258)
T COG1120          80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL  148 (258)
T ss_pred             EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence            99999754 5569999875432        1122   2467789999998887764           2679999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+++|++|+|||||++||..++.++++.++++.  +|+|+|++.|+++.+. .||++++|++|++++.|+|+|++.
T Consensus       149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT  228 (258)
T COG1120         149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT  228 (258)
T ss_pred             HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence            9999999999999999999999999999999999864  4799999999999765 599999999999999999999986


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       229 ~  229 (258)
T COG1120         229 E  229 (258)
T ss_pred             H
Confidence            4

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-52  Score=417.33  Aligned_cols=225  Identities=22%  Similarity=0.341  Sum_probs=196.5

Q ss_pred             CCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC-
Q 044927          215 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS-  288 (467)
Q Consensus       215 ~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~-  288 (467)
                      |+..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++     |++|+|.+||+++.. 
T Consensus        75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~  154 (329)
T PRK14257         75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK  154 (329)
T ss_pred             CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence            55667899999999997544569999999999999999999999999999999999996     579999999999973 


Q ss_pred             -CCHHHHhcccEEEcCCCccccccHHHhcCcCC---CCCHHH-----HHHHHHHcChHHHHHhCCCcccccccCCCCCCC
Q 044927          289 -MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDNE-----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWS  359 (467)
Q Consensus       289 -~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~~~~~-----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS  359 (467)
                       .+...+|+.++||||+|++|++|++||+.+..   ..++++     +.++++.+++       +.++++.+++++.+||
T Consensus       155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LS  227 (329)
T PRK14257        155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALS  227 (329)
T ss_pred             ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCC
Confidence             34567899999999999999999999997432   133333     3445566554       3345677889999999


Q ss_pred             hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927          360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~  438 (467)
                      ||||||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++++.. ||||++|++|+|++.|+
T Consensus       228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~  307 (329)
T PRK14257        228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE  307 (329)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999998778999999999999887 99999999999999999


Q ss_pred             hhhHhccC
Q 044927          439 PSKLMETN  446 (467)
Q Consensus       439 ~~~l~~~~  446 (467)
                      ++++....
T Consensus       308 ~~~l~~~~  315 (329)
T PRK14257        308 TKTIFIHP  315 (329)
T ss_pred             HHHHhcCC
Confidence            99998643

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6e-52  Score=382.09  Aligned_cols=217  Identities=27%  Similarity=0.483  Sum_probs=192.7

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR  295 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r  295 (467)
                      ..|++++|+++|++  +.+++|+||+|++||+++|+||||||||||+|+|.|+.+|++|+|.++|.++..++..   ++|
T Consensus         7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            36999999999964  4599999999999999999999999999999999999999999999999999988764   568


Q ss_pred             cccEEEcCCCccccc-cHHHhcCcC----CCCCHHHHHH----HHHHcChHHH-HHhCCCcccccccCCCCCCChhHHHH
Q 044927          296 TKLSIIPQEPTLFRG-SVRTNLDPL----GMYSDNEIWE----AMEKCQLKAT-ISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~-tv~enl~~~----~~~~~~~~~~----~~~~~~l~~~-i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      +++|+++|...||+. ||+||+.+.    ...+++.+++    .++.+||... .+.+|           .+|||||++|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR  153 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR  153 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence            999999999999976 999999752    2345554443    5677888777 66777           7899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ++||||++.||+|+++||||+||||.+...+-+.|+++.+  +.|+++|||+++++.. |||++++.+|+|+..|+++|+
T Consensus       154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el  233 (263)
T COG1127         154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL  233 (263)
T ss_pred             HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999888643  8999999999998876 899999999999999999999


Q ss_pred             hccCch
Q 044927          443 METNSA  448 (467)
Q Consensus       443 ~~~~~~  448 (467)
                      .+.+..
T Consensus       234 ~~sd~P  239 (263)
T COG1127         234 LASDDP  239 (263)
T ss_pred             HhCCCH
Confidence            986543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=3.7e-51  Score=397.81  Aligned_cols=238  Identities=50%  Similarity=0.815  Sum_probs=215.8

Q ss_pred             CcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 044927          217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       217 ~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~  296 (467)
                      ..+.++++|++++|++....+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+.+...+++
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~   95 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS   95 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence            35679999999999753345999999999999999999999999999999999999999999999999998888888899


Q ss_pred             ccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          297 KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      .++|++|++.+|++|+++|+.+......++++++++..++.+.++.+|.|+++.+++.+.+||||||||++||||++++|
T Consensus        96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  175 (257)
T cd03288          96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS  175 (257)
T ss_pred             hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999754333455677888888999999999999999999999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHH
Q 044927          377 RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVA  454 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~  454 (467)
                      ++|||||||++||+.++..+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+. ++.|++++.
T Consensus       176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~  254 (257)
T cd03288         176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR  254 (257)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence            999999999999999999999999987778999999999999988999999999999999999999864 455665543

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=4.4e-51  Score=388.43  Aligned_cols=219  Identities=57%  Similarity=0.967  Sum_probs=204.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS   81 (221)
T ss_pred             cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence            58999999999754446999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      |+||++.+|+.|++||+.+......+++.++++..++.+++.++|.|+++.+++.+.+||||||||++|||||+++|+++
T Consensus        82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll  161 (221)
T cd03244          82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL  161 (221)
T ss_pred             EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999765445667788899999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927          380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDL  438 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~  438 (467)
                      ||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus       162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence            99999999999999999999998777799999999999998899999999999998876

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=9.1e-51  Score=389.63  Aligned_cols=231  Identities=32%  Similarity=0.530  Sum_probs=209.5

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL   80 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            47899999996543358999999999999999999999999999999999999999999999999887777778889999


Q ss_pred             EcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      +||++.+|+.|++||+.+.. .....++.+.++..++.++++.+|.|+++..+....+||||||||++|||||+++|+++
T Consensus        81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  160 (234)
T cd03251          81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL  160 (234)
T ss_pred             eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999997542 33455667778888999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHH
Q 044927          380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK  451 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~  451 (467)
                      ||||||++||+.++..+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+++++....+.|+.
T Consensus       161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~  232 (234)
T cd03251         161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK  232 (234)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence            999999999999999999999988778999999999999988999999999999999999998876655543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.8e-51  Score=402.22  Aligned_cols=212  Identities=26%  Similarity=0.432  Sum_probs=192.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||++.|++..  +++|+||+|++||+++|+||||||||||+++|+||.+|++|+|+++|.+++++++++  +.||
T Consensus         3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia   78 (338)
T COG3839           3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA   78 (338)
T ss_pred             EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence            589999999997533  899999999999999999999999999999999999999999999999999998875  7899


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      +|||+..||+. ||+|||.|.-.   .+    ++++.++++..++.+.+++.|           .+||||||||||||||
T Consensus        79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA  147 (338)
T COG3839          79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA  147 (338)
T ss_pred             EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence            99999999975 99999986422   12    456788999999999999988           7899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |+++|++++||||+|+||++.+..+...|+++.+  +.|+|+||||..++.. +|||.||++|+|.+.|+|.|+....
T Consensus       148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P  225 (338)
T COG3839         148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP  225 (338)
T ss_pred             HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence            9999999999999999999999999988888543  7899999999988775 9999999999999999999998643

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=2.6e-50  Score=387.00  Aligned_cols=232  Identities=34%  Similarity=0.577  Sum_probs=210.4

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|+++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus         1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~   79 (236)
T cd03253           1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV   79 (236)
T ss_pred             CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            4789999999643 348999999999999999999999999999999999999999999999999988888888889999


Q ss_pred             EcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      ++|++.+|+.|++||+.+.. ..++.++.+.++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|+++
T Consensus        80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll  159 (236)
T cd03253          80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL  159 (236)
T ss_pred             ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999997542 34456677788888999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927          380 VLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV  453 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~  453 (467)
                      ||||||++||+.+...+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+++++....+.|+.++
T Consensus       160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~  233 (236)
T cd03253         160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW  233 (236)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence            99999999999999999999998766899999999999998899999999999999999999887666555544

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.8e-50  Score=386.29  Aligned_cols=225  Identities=36%  Similarity=0.620  Sum_probs=206.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus         2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (229)
T cd03254           2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG   80 (229)
T ss_pred             eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence            58999999999632 34899999999999999999999999999999999999999999999999998877778888999


Q ss_pred             EEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          300 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      |+||++.+|++|++||+.+.. .....++.++++..++.++++++|.|+++.++....+||||||||++|||||+.+|++
T Consensus        81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l  160 (229)
T cd03254          81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI  160 (229)
T ss_pred             EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            999999999899999997543 2345667778888999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927          379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus       161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~  227 (229)
T cd03254         161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK  227 (229)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence            9999999999999999999999988678999999999999888999999999999999998887654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-51  Score=384.77  Aligned_cols=209  Identities=26%  Similarity=0.403  Sum_probs=183.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++|++++|++.  ++|+||||++++|++++|+||||||||||+|+|+|+.+|.+|+|.++|.+......   +.+||
T Consensus         4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig   78 (254)
T COG1121           4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG   78 (254)
T ss_pred             EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence            59999999999744  49999999999999999999999999999999999999999999999987765432   46899


Q ss_pred             EEcCCC---ccccccHHHhcCcCCC--------C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          300 IIPQEP---TLFRGSVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       300 ~v~Q~~---~lf~~tv~enl~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      ||||..   +-|+.||+|-+.++..        .   +.+++.++++.+++.++.++.           ...|||||+||
T Consensus        79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-----------i~~LSGGQ~QR  147 (254)
T COG1121          79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-----------IGELSGGQKQR  147 (254)
T ss_pred             EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-----------ccccCcHHHHH
Confidence            999965   3488899998854311        1   236788999999999887663           36799999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +.|||||+++|++|+|||||+|+|+.++..+.+.|+++++ |+||++||||++.+.. ||+|+.|+ ++++..|++++..
T Consensus       148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~  226 (254)
T COG1121         148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL  226 (254)
T ss_pred             HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence            9999999999999999999999999999999999999754 8999999999998875 99999996 6789999999998


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       227 ~~  228 (254)
T COG1121         227 TE  228 (254)
T ss_pred             CH
Confidence            64

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=7.8e-50  Score=384.17  Aligned_cols=231  Identities=35%  Similarity=0.612  Sum_probs=207.1

Q ss_pred             EEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          221 IELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       221 i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      ++++|+++.|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            4789999999643 245899999999999999999999999999999999999999999999999988777777788899


Q ss_pred             EEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          300 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      |++|++.+|+.|++||+.+.. ....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  160 (238)
T cd03249          81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI  160 (238)
T ss_pred             EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            999999999889999997532 2344566677788889999999999999999988999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHH
Q 044927          379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK  451 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~  451 (467)
                      +||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++......++.
T Consensus       161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~  233 (238)
T cd03249         161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK  233 (238)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHH
Confidence            9999999999999999999999987678999999999999888999999999999999999988765544443

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4.2e-50  Score=374.56  Aligned_cols=203  Identities=30%  Similarity=0.436  Sum_probs=176.1

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H-
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L-  294 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~-  294 (467)
                      ++++||++.|..+.  ..+|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.|+..++.++   + 
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            57899999996432  35899999999999999999999999999999999999999999999999999887543   3 


Q ss_pred             hcccEEEcCCCccccc-cHHHhcCc----CCCCC---HHHHHHHHHHcChHHHHH-hCCCcccccccCCCCCCChhHHHH
Q 044927          295 RTKLSIIPQEPTLFRG-SVRTNLDP----LGMYS---DNEIWEAMEKCQLKATIS-RLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~~-tv~enl~~----~~~~~---~~~~~~~~~~~~l~~~i~-~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      |++||||+|+..|.+. |+.||+.+    .+...   .+.....++..++.+... +.|           .+||||||||
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR  150 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR  150 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence            5679999999998865 99999962    22111   334556677778876655 555           7899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEE
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELV  434 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv  434 (467)
                      |||||||+.+|++++.||||.+||.++.+.+++.+++..  .|+|+|+|||++..+..|||++.|++|++.
T Consensus       151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence            999999999999999999999999999999999999863  378999999999999999999999999954

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.2e-50  Score=404.01  Aligned_cols=214  Identities=26%  Similarity=0.420  Sum_probs=187.5

Q ss_pred             EEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 044927          221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR  295 (467)
Q Consensus       221 i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r  295 (467)
                      |+++||+++|+.+  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+   +|
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            7899999999632  236999999999999999999999999999999999999999999999999998877554   57


Q ss_pred             cccEEEcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          296 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ++|||+||++.+|+ .|++||+.+..   ..+.    +++.++++.+++.+..++.|           .+||||||||++
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~  150 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA  150 (343)
T ss_pred             cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence            89999999999986 69999996421   1222    34566777788777666554           789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|++||||||||+||+.++..+++.|++..+  +.|+|+|||+++.+.. ||||++|++|+|++.|++++++.
T Consensus       151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            99999999999999999999999999999999998643  7999999999999875 99999999999999999999976


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       231 ~  231 (343)
T TIGR02314       231 H  231 (343)
T ss_pred             C
Confidence            3

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.4e-50  Score=374.70  Aligned_cols=222  Identities=27%  Similarity=0.375  Sum_probs=184.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .+++++|++.|+.  ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++...     ...++
T Consensus         3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~   75 (248)
T COG1116           3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG   75 (248)
T ss_pred             eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence            4899999999975  4599999999999999999999999999999999999999999999999987433     34799


Q ss_pred             EEcCCCcccc-ccHHHhcCcCCC---C----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||+|++.||+ -||+||+.+.-.   .    ..+.+.+.++.+|+.++-++.|           .+||||||||++||||
T Consensus        76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA  144 (248)
T COG1116          76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA  144 (248)
T ss_pred             EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence            9999999987 599999975321   1    1345778899999999999988           7899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEE---EecChhhHh
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELV---EYDLPSKLM  443 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv---~~g~~~~l~  443 (467)
                      |+.+|++|+||||+++||+.|+..+++.+.+..  .++|+++|||+++++-. +|||++|.+  |+|.   +..-+..-.
T Consensus       145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR~  224 (248)
T COG1116         145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRI  224 (248)
T ss_pred             HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCcc
Confidence            999999999999999999999999999998853  47999999999998665 999999999  4453   322221112


Q ss_pred             ccCchHHHHHHHHHhh
Q 044927          444 ETNSAFSKLVAEYRSS  459 (467)
Q Consensus       444 ~~~~~~~~l~~~~~~~  459 (467)
                      ..+..|.++.++-.+.
T Consensus       225 ~~~~~f~~l~~~i~~~  240 (248)
T COG1116         225 RGDPEFLELREELLEE  240 (248)
T ss_pred             ccChHHHHHHHHHHHH
Confidence            3445566666554433

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.5e-49  Score=377.74  Aligned_cols=218  Identities=32%  Similarity=0.538  Sum_probs=198.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++...++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG   81 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence            48999999999643345899999999999999999999999999999999999999999999999987777777788999


Q ss_pred             EEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          300 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      |++|++.+|..|+.||+.+.. ....+++.+.++..++.+.++..|.|+++.+.+...+||||||||++||||++.+|++
T Consensus        82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l  161 (220)
T cd03245          82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI  161 (220)
T ss_pred             EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            999999998889999996532 2345567788899999999999999999999888999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927          379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g  437 (467)
                      |||||||++||+.+...+.+.|++..+++|+|++||+++.++.||++++|++|++++.|
T Consensus       162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence            99999999999999999999999976668999999999988789999999999998754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-50  Score=381.80  Aligned_cols=214  Identities=32%  Similarity=0.487  Sum_probs=194.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC-CCCHHHHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC-SMGLKDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~-~~~~~~~r~~i  298 (467)
                      .++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||++++.|+++|++|+|.++|.++. ..+...+|+++
T Consensus         3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v   81 (235)
T COG1122           3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV   81 (235)
T ss_pred             eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence            48899999999766 56999999999999999999999999999999999999999999999999988 47788999999


Q ss_pred             EEEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      |||+|+|  .+|..||.+.+.|+.   ..+.    +++.++++.+++.++.++.|           .+||||||||++||
T Consensus        82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA  150 (235)
T COG1122          82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA  150 (235)
T ss_pred             EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence            9999999  689999999998653   2333    34667899999998877777           78999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      .+|+.+|++||||||||+||+...+.+.+.++++.+  ++|+|++||+++.+.. |||+++|++|+++.+|+|+++.+.
T Consensus       151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            999999999999999999999999999999999754  5899999999999886 999999999999999999998764

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-50  Score=400.33  Aligned_cols=212  Identities=25%  Similarity=0.390  Sum_probs=191.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|+  ...+++|+||+|++||+++++|||||||||++++|+||..|++|+|.++|+++.+++++  ++.||
T Consensus         5 ~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig   80 (352)
T COG3842           5 ALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG   80 (352)
T ss_pred             eEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence            599999999997  34599999999999999999999999999999999999999999999999999998876  67899


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC----CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM----YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      +|||+..||+- ||+||+.|+-.    ..+    +++.++++.+++.++..+.|           .+|||||+||+||||
T Consensus        81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR  149 (352)
T COG3842          81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR  149 (352)
T ss_pred             eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence            99999999975 99999986422    232    36778999999999998888           789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      ||+.+|++|+||||.|+||.+-+..++..+++..  .|.|.|+|||+-+++. .+|||.||++|+|...|+|+|+....
T Consensus       150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P  228 (352)
T COG3842         150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP  228 (352)
T ss_pred             HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence            9999999999999999999999999998888753  3899999999998765 59999999999999999999998654

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=7.8e-50  Score=383.49  Aligned_cols=216  Identities=29%  Similarity=0.442  Sum_probs=183.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~  297 (467)
                      ++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+|+.
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   78 (235)
T cd03261           1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR   78 (235)
T ss_pred             CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence            478999999963  359999999999999999999999999999999999999999999999999877654   467889


Q ss_pred             cEEEcCCCccccc-cHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      ++|+||++.+|+. |++||+.+..    ..+.    +++.++++.+++.++.++           ...+||||||||++|
T Consensus        79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~i  147 (235)
T cd03261          79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRVAL  147 (235)
T ss_pred             eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence            9999999999876 9999996421    1222    234455666666544433           336899999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||||+.+|++|||||||++||+.++..+.+.|++..  .++|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus       148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  227 (235)
T cd03261         148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS  227 (235)
T ss_pred             HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence            999999999999999999999999999999998864  37899999999998875 999999999999999999998764


Q ss_pred             CchH
Q 044927          446 NSAF  449 (467)
Q Consensus       446 ~~~~  449 (467)
                      ...|
T Consensus       228 ~~~~  231 (235)
T cd03261         228 DDPL  231 (235)
T ss_pred             CChh
Confidence            4333

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-49  Score=368.29  Aligned_cols=215  Identities=27%  Similarity=0.457  Sum_probs=185.6

Q ss_pred             cEEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhc
Q 044927          220 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~r~  296 (467)
                      .++++|+++.|+...  .++|+||||+|.+||++||+|+||||||||.++|+|+.+|++|+|+++|.++.... .+..++
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence            489999999997542  14899999999999999999999999999999999999999999999998776543 346788


Q ss_pred             ccEEEcCCCcc---ccccHHHhcC----cCC-CCCHHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          297 KLSIIPQEPTL---FRGSVRTNLD----PLG-MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       297 ~i~~v~Q~~~l---f~~tv~enl~----~~~-~~~~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      .+.+|||||+-   ..-||++-|.    ..+ .-...+++++++.+++. ++..+.|           .+|||||+||+|
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia  151 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA  151 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence            89999999963   2347777663    111 12345688899999985 5667777           679999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||..+|++||||||||+||+..+..|++.+.+..+  +-|.|+|||+++.+.+ ||||+||++|+|+|.++.+++.+
T Consensus       152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence            99999999999999999999999999999999998654  5699999999999997 99999999999999999999987


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       232 ~  232 (252)
T COG1124         232 H  232 (252)
T ss_pred             C
Confidence            4

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=7.5e-50  Score=355.14  Aligned_cols=207  Identities=23%  Similarity=0.378  Sum_probs=186.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~  297 (467)
                      |+|+||+++|+++ +++|+|+||+|++||++-++||||||||||+|+|++...|++|+|.++|.|++.++.+   -+|++
T Consensus         2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence            7899999999876 6699999999999999999999999999999999999999999999999999988655   47999


Q ss_pred             cEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ||+|+||..|... ||+||+.+.-   ..+    .+++.++++.+||.+-...+|           .+|||||+||++||
T Consensus        81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA  149 (223)
T COG2884          81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA  149 (223)
T ss_pred             eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence            9999999988754 9999997521   122    345677999999999999999           78999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      ||++.+|++||-||||.+|||.+...|++.+.+.. .|.||++.||+.+.+.. --|++.+++|+++.+..+
T Consensus       150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence            99999999999999999999999999999999864 59999999999999987 579999999999876543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-49  Score=365.43  Aligned_cols=212  Identities=29%  Similarity=0.446  Sum_probs=186.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~r~  296 (467)
                      .|+++||++.|+++ ..+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++..++   .+.+|+
T Consensus         3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence            58999999999754 45999999999999999999999999999999999999999999999999998886   556788


Q ss_pred             ccEEEcCCCcccc-ccHHHhcCcC------------CCCCHH---HHHHHHHHcChHHHHHhCCCcccccccCCCCCCCh
Q 044927          297 KLSIIPQEPTLFR-GSVRTNLDPL------------GMYSDN---EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV  360 (467)
Q Consensus       297 ~i~~v~Q~~~lf~-~tv~enl~~~------------~~~~~~---~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSg  360 (467)
                      ++|+++|++.|.+ .||.+|+..+            +.++.+   ...++++++++.+....           +..+|||
T Consensus        82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG  150 (258)
T COG3638          82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG  150 (258)
T ss_pred             hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence            9999999999875 4999998422            223333   34567777887765543           3478999


Q ss_pred             hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      ||+|||+|||||+++|++++-|||+|+|||.+.+.+++.|++.  ..|.|+|+.-|.++.++. ||||+-|++|+|+.+|
T Consensus       151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg  230 (258)
T COG3638         151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG  230 (258)
T ss_pred             chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence            9999999999999999999999999999999999999999985  358999999999999875 9999999999999999


Q ss_pred             ChhhHh
Q 044927          438 LPSKLM  443 (467)
Q Consensus       438 ~~~~l~  443 (467)
                      +++|+-
T Consensus       231 ~~~el~  236 (258)
T COG3638         231 PASELT  236 (258)
T ss_pred             Chhhhh
Confidence            999964

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=1.3e-48  Score=367.76  Aligned_cols=206  Identities=59%  Similarity=0.982  Sum_probs=181.6

Q ss_pred             CCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 044927          216 PSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR  295 (467)
Q Consensus       216 ~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r  295 (467)
                      |..+.++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++|
T Consensus         2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   81 (207)
T cd03369           2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR   81 (207)
T ss_pred             CCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence            34457999999999975334599999999999999999999999999999999999999999999999999887777888


Q ss_pred             cccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          296 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      +.++|+||++.+|++|++||+.+......+++.++++                  ++.....|||||+||++||||++.+
T Consensus        82 ~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~  143 (207)
T cd03369          82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR  143 (207)
T ss_pred             hhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence            8999999999999999999997543334444333332                  2345688999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecCh
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~  439 (467)
                      |+++||||||++||+.++..+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus       144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence            9999999999999999999999999987678999999999999888999999999999988864

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.8e-49  Score=391.12  Aligned_cols=220  Identities=22%  Similarity=0.363  Sum_probs=182.8

Q ss_pred             ccEEEEeEEEEeCCC---CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------
Q 044927          219 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------  289 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~---~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~------  289 (467)
                      ..|+++|++|+|++.   ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.      
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~   99 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL   99 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence            469999999999642   13599999999999999999999999999999999999999999999999998653      


Q ss_pred             ----------CHHHHhcccEEEcCCC--ccccccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCccc-ccccC
Q 044927          290 ----------GLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSD  353 (467)
Q Consensus       290 ----------~~~~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~  353 (467)
                                ....+|++++||+|+|  .+|+.|++||+.+..   ..+.++..+.     ..++++.+  |++ ...++
T Consensus       100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~  172 (320)
T PRK13631        100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLER  172 (320)
T ss_pred             cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcC
Confidence                      3456789999999998  688899999996532   1233222111     12233333  332 34556


Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHh-hcCEEEEEeCC
Q 044927          354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTIT-DSDMFMVLSYG  431 (467)
Q Consensus       354 ~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl~~G  431 (467)
                      .+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|++. .+++|+|+|||+++.+. .||||++|++|
T Consensus       173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G  252 (320)
T PRK13631        173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG  252 (320)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence            67899999999999999999999999999999999999999999999875 35899999999999875 59999999999


Q ss_pred             EEEEecChhhHhcc
Q 044927          432 ELVEYDLPSKLMET  445 (467)
Q Consensus       432 ~iv~~g~~~~l~~~  445 (467)
                      ++++.|+++++.+.
T Consensus       253 ~i~~~g~~~~~~~~  266 (320)
T PRK13631        253 KILKTGTPYEIFTD  266 (320)
T ss_pred             EEEEeCCHHHHhcC
Confidence            99999999987653

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=4.8e-49  Score=347.38  Aligned_cols=210  Identities=26%  Similarity=0.395  Sum_probs=186.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      +.+++|.|.|+...    -.++++|++||++||+||||||||||+++|+||..|.+|+|.++|+|....++.  ++-+++
T Consensus         2 l~L~~V~~~y~~~~----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm   75 (231)
T COG3840           2 LALDDVRFSYGHLP----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM   75 (231)
T ss_pred             ccccceEEeeCcce----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence            56889999996321    368899999999999999999999999999999999999999999999877664  467999


Q ss_pred             EcCCCccccc-cHHHhcCcCC----CC---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG----MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~----~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ++|+..||.- ||.+|+.++.    ..   ..+++..++.++|+..+.+++|           .+||||||||++|||+|
T Consensus        76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl  144 (231)
T COG3840          76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL  144 (231)
T ss_pred             hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence            9999999975 9999996532    12   2456888999999999999999           68999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccCc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNS  447 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~  447 (467)
                      +++-|||+||||+|+|||.-+..+...+.++.  ++.|++||||.++.+.. +||++++++|+|.++|+.+++++..+
T Consensus       145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~  222 (231)
T COG3840         145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA  222 (231)
T ss_pred             hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence            99999999999999999999999999888753  47899999999998876 99999999999999999999987543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-48  Score=384.40  Aligned_cols=215  Identities=26%  Similarity=0.415  Sum_probs=189.2

Q ss_pred             cEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          220 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      .++++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence            48999999999642 24599999999999999999999999999999999999999999999999999887777888999


Q ss_pred             EEEcCCCc--cccccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~~--lf~~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +|++|+|.  ++..|++||+.+..   ..+    ++++.++++.+++.++.++.|           .+||||||||++||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA  152 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA  152 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence            99999983  45679999997531   122    234667788888877766655           68999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |||+.+|++|||||||++||+.+++.+.+.|++..  .|+|+|++||+++.+..||||++|++|++++.|+++++.+.
T Consensus       153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence            99999999999999999999999999999999864  38999999999999878999999999999999999988754

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=5.9e-49  Score=375.41  Aligned_cols=211  Identities=31%  Similarity=0.480  Sum_probs=181.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCccEEEEcCEeCCCCC--HHH
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILIDGLDICSMG--LKD  293 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~-----~p~~G~i~i~g~~i~~~~--~~~  293 (467)
                      |+++||+++|++  .++|+|+||++++||+++|+||||||||||+++|+|++     +|++|+|.++|.++...+  ...
T Consensus         1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   78 (227)
T cd03260           1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE   78 (227)
T ss_pred             CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence            478999999964  35999999999999999999999999999999999999     999999999999987766  556


Q ss_pred             HhcccEEEcCCCccccccHHHhcCcCC---C-CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          294 LRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~---~-~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      ++++++|+||++.+|..|++||+.+..   . ..    ++++.++++..++.+...+.++         +.+||||||||
T Consensus        79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr  149 (227)
T cd03260          79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR  149 (227)
T ss_pred             HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence            788999999999998779999996421   1 11    2345566777777655444321         46899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ++|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            99999999999999999999999999999999999987545899999999998775 999999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-48  Score=396.00  Aligned_cols=212  Identities=23%  Similarity=0.352  Sum_probs=187.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++.  ++.||
T Consensus         3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig   79 (356)
T PRK11650          3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA   79 (356)
T ss_pred             EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence            48999999999423 3599999999999999999999999999999999999999999999999999887654  47899


Q ss_pred             EEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+ .||+||+.+..   ..+    .+++.++++.+++.++.++.|           .+||||||||++||||
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA  148 (356)
T PRK11650         80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA  148 (356)
T ss_pred             EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence            9999999996 59999997532   122    234667888888888777766           6899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |+++|++||||||||+||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~  225 (356)
T PRK11650        149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK  225 (356)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999988643  7999999999998764 999999999999999999999764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=2e-48  Score=369.99  Aligned_cols=210  Identities=24%  Similarity=0.367  Sum_probs=180.0

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++||++.|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~   79 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY   79 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence            478999999964324599999999999999999999999999999999999999999999999998654 3567788999


Q ss_pred             EcCCCccc-cccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLF-RGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf-~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ++|++.+| ..|+++|+.+..   ....    +++.++++..++.+..++.           ..+||||||||++||||+
T Consensus        80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al  148 (220)
T cd03263          80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR-----------ARTLSGGMKRKLSLAIAL  148 (220)
T ss_pred             ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh-----------hhhCCHHHHHHHHHHHHH
Confidence            99999988 469999996421   1121    3345566666665544332           368999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      +.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            9999999999999999999999999999987667999999999999865 999999999999999998875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=9.9e-49  Score=371.05  Aligned_cols=202  Identities=24%  Similarity=0.398  Sum_probs=174.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~  297 (467)
                      ++++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .+|++
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH   81 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence            789999999964334599999999999999999999999999999999999999999999999998766543   46788


Q ss_pred             cEEEcCCCcccc-ccHHHhcCcCC---CC----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLFR-GSVRTNLDPLG---MY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf~-~tv~enl~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ++|+||++.+|. .|++||+.+..   ..    .++++.++++..++.+..++.|           .+||||||||++||
T Consensus        82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la  150 (216)
T TIGR00960        82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA  150 (216)
T ss_pred             ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence            999999999886 59999996421   11    1245667777777776665554           67999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      |||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|+|||+++.+.. ||++++|++|+|
T Consensus       151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999998864 47999999999999875 999999999975

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-48  Score=392.15  Aligned_cols=214  Identities=27%  Similarity=0.422  Sum_probs=184.2

Q ss_pred             EEEEeEEEEeCC--CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 044927          221 IELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR  295 (467)
Q Consensus       221 i~~~~vs~~y~~--~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r  295 (467)
                      |+++||+++|++  ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+   +|
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            789999999962  1346999999999999999999999999999999999999999999999999998876543   47


Q ss_pred             cccEEEcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          296 TKLSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ++|+|+||++.+|. .|++||+.+..   ..+.    +++.+.++..++.+..++.           ..+||||||||++
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~  150 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA  150 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence            88999999999886 59999996421   1222    2345566666665554443           3789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+++|++|||||||++||+.++..+.+.|+++.  .++|+|++||+++.+.. |||+++|++|++++.|+++++..
T Consensus       151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~  230 (343)
T PRK11153        151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS  230 (343)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999999999999999999999999864  37999999999999875 99999999999999999999976


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       231 ~  231 (343)
T PRK11153        231 H  231 (343)
T ss_pred             C
Confidence            4

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-48  Score=372.05  Aligned_cols=213  Identities=30%  Similarity=0.477  Sum_probs=185.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~   80 (241)
T PRK14250          3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG   80 (241)
T ss_pred             eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence            4899999999964  35899999999999999999999999999999999999999999999999998777777888999


Q ss_pred             EEcCCCccccccHHHhcCcCCC---CCHHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          300 IIPQEPTLFRGSVRTNLDPLGM---YSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~~---~~~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |+||++.+|+.|++||+.+...   ...+++.+.++..++. +...           ....+||||||||++||||++++
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~  149 (241)
T PRK14250         81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN  149 (241)
T ss_pred             EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence            9999999998899999974321   1233455566666663 2222           34478999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |++|||||||++||+.+++.+.+.|++..  .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (241)
T PRK14250        150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN  222 (241)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence            99999999999999999999999998863  37999999999999875 999999999999999999998764

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-48  Score=392.18  Aligned_cols=211  Identities=26%  Similarity=0.404  Sum_probs=186.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++.  ++++|
T Consensus         6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig   81 (351)
T PRK11432          6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDIC   81 (351)
T ss_pred             EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence            5999999999963  4589999999999999999999999999999999999999999999999999876643  57899


Q ss_pred             EEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+. |++||+.+..   ..+    .+++.++++..++.++.++.|           ..||||||||++||||
T Consensus        82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa  150 (351)
T PRK11432         82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA  150 (351)
T ss_pred             EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999975 9999997531   122    245667778888877666655           6899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |+.+|++||||||||+||+.++..+.+.|+++.+  ++|+|+|||+++.+.. ||||++|++|+|++.|+++++...
T Consensus       151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~  227 (351)
T PRK11432        151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ  227 (351)
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999988643  7999999999998764 999999999999999999999764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-48  Score=381.48  Aligned_cols=212  Identities=27%  Similarity=0.415  Sum_probs=186.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+...++++++
T Consensus         4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   82 (274)
T PRK13647          4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG   82 (274)
T ss_pred             eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence            48999999999633 35999999999999999999999999999999999999999999999999998877788888999


Q ss_pred             EEcCCC--ccccccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          300 IIPQEP--TLFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       300 ~v~Q~~--~lf~~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |+||+|  .+|..|+.+|+.+..   ..+    .+++.++++.+++.+..++.|           .+||||||||++|||
T Consensus        83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar  151 (274)
T PRK13647         83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG  151 (274)
T ss_pred             EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence            999998  577889999997531   122    234567788888877766665           579999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ||+.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus       152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  226 (274)
T PRK13647        152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT  226 (274)
T ss_pred             HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence            9999999999999999999999999999998864 4899999999999985 59999999999999999987653

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-48  Score=381.80  Aligned_cols=215  Identities=26%  Similarity=0.433  Sum_probs=189.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+++.++
T Consensus         5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~   84 (279)
T PRK13635          5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG   84 (279)
T ss_pred             eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence            48999999999643446999999999999999999999999999999999999999999999999998887777888999


Q ss_pred             EEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          300 IIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       300 ~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |+||++  .++..|+.||+.+..   ..+.    +++.++++.+++.+++.+.|           ..||||||||++|||
T Consensus        85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar  153 (279)
T PRK13635         85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG  153 (279)
T ss_pred             EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence            999998  456679999997531   1222    34566778888877777665           589999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||+.+|++|||||||++||+.+...+.+.|+++.+  ++|+|++||+++.+..||||++|++|++++.|+++++.+.
T Consensus       154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13635        154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS  230 (279)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence            99999999999999999999999999999998643  7999999999999888999999999999999999988754

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-48  Score=383.47  Aligned_cols=215  Identities=29%  Similarity=0.451  Sum_probs=182.3

Q ss_pred             EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHh
Q 044927          221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLR  295 (467)
Q Consensus       221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r  295 (467)
                      ++++||+++|++..   +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+  ...++
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence            78999999996422   35999999999999999999999999999999999999999999999999997653  35678


Q ss_pred             cccEEEcCCC--ccccccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          296 TKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       296 ~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      +++|||||+|  .+|+.|++||+.+..   ..+.+    ++.++++.+++.         +.+.......+||||||||+
T Consensus        83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv  153 (287)
T PRK13637         83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV  153 (287)
T ss_pred             hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence            8999999998  567889999997532   12332    344556666553         01223344578999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +|||||+.+|++|||||||++||+.++..+.+.|+++.  .++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus       154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13637        154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF  233 (287)
T ss_pred             HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999998864  3799999999999875 59999999999999999999986


Q ss_pred             c
Q 044927          444 E  444 (467)
Q Consensus       444 ~  444 (467)
                      +
T Consensus       234 ~  234 (287)
T PRK13637        234 K  234 (287)
T ss_pred             h
Confidence            5

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=2.8e-48  Score=372.88  Aligned_cols=215  Identities=25%  Similarity=0.412  Sum_probs=179.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcccE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS  299 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i~  299 (467)
                      ++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus         1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (236)
T cd03219           1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG   78 (236)
T ss_pred             CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence            468999999963  359999999999999999999999999999999999999999999999999987776554 56799


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC-C------------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM-Y------------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~-~------------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      |+||++.+|.. |++||+.+... .            ..++..     ..+.+.++.+  |++...+....+||||||||
T Consensus        79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qr  151 (236)
T cd03219          79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQRR  151 (236)
T ss_pred             EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHHH
Confidence            99999999876 99999964211 1            011111     1122333333  34444455668899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ++|||||+.+|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (236)
T cd03219         152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR  231 (236)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence            999999999999999999999999999999999998864 58999999999999865 9999999999999999999886


Q ss_pred             c
Q 044927          444 E  444 (467)
Q Consensus       444 ~  444 (467)
                      .
T Consensus       232 ~  232 (236)
T cd03219         232 N  232 (236)
T ss_pred             c
Confidence            4

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=2.6e-48  Score=386.40  Aligned_cols=212  Identities=26%  Similarity=0.418  Sum_probs=181.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++  ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+ ...|+++|
T Consensus         7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig   83 (306)
T PRK13537          7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG   83 (306)
T ss_pred             eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence            5999999999964  35999999999999999999999999999999999999999999999999987654 45788999


Q ss_pred             EEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      |+||++.+|. .|++||+.+..   ..+..    ++.++++.+++.+..++           ...+||||||||++||||
T Consensus        84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~a  152 (306)
T PRK13537         84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA-----------KVGELSGGMKRRLTLARA  152 (306)
T ss_pred             EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------chhhCCHHHHHHHHHHHH
Confidence            9999999886 59999996422   12222    23345555555433322           236799999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |+++|++|||||||+|||+.+++.+++.|+++. +|+|+|++||+++.++. ||||++|++|++++.|+++++.+.
T Consensus       153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            999999999999999999999999999999864 48999999999999876 999999999999999999998643

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=3.4e-48  Score=373.31  Aligned_cols=211  Identities=30%  Similarity=0.458  Sum_probs=179.5

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~r~~  297 (467)
                      ++++||+++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+   ...+++.
T Consensus         1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence            4689999999642 35999999999999999999999999999999999999999999999999988766   4567889


Q ss_pred             cEEEcCCCcccc-ccHHHhcCcCCC------------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927          298 LSIIPQEPTLFR-GSVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG  361 (467)
Q Consensus       298 i~~v~Q~~~lf~-~tv~enl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG  361 (467)
                      ++|+||++.+|. .|++||+.+...            ..   .+++.++++..++.+.           ....+.+||||
T Consensus        80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G  148 (241)
T cd03256          80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSGG  148 (241)
T ss_pred             cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCHH
Confidence            999999998886 599999963210            11   1234445555555433           33445789999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecC
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDL  438 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~  438 (467)
                      ||||++|||||+.+|++|||||||++||+.++..+.+.|++..  .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus       149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~  228 (241)
T cd03256         149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP  228 (241)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            9999999999999999999999999999999999999999864  3799999999999988 599999999999999999


Q ss_pred             hhhHh
Q 044927          439 PSKLM  443 (467)
Q Consensus       439 ~~~l~  443 (467)
                      ++++.
T Consensus       229 ~~~~~  233 (241)
T cd03256         229 PAELT  233 (241)
T ss_pred             HHHhh
Confidence            98864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=5.4e-48  Score=368.49  Aligned_cols=216  Identities=31%  Similarity=0.504  Sum_probs=193.3

Q ss_pred             cccEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 044927          218 HGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~  296 (467)
                      .+.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus         9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   88 (226)
T cd03248           9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS   88 (226)
T ss_pred             CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence            4579999999999643 235999999999999999999999999999999999999999999999999887777777788


Q ss_pred             ccEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          297 KLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      .++|++|++.+|+.|++||+.+.. .....++.+..+..++.+++..+|.|+++.+.....+||||||||++|||||+++
T Consensus        89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~  168 (226)
T cd03248          89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN  168 (226)
T ss_pred             hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999997532 2233445555666778899999998999889999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGEL  433 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i  433 (467)
                      |+++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus       169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            9999999999999999999999999987667999999999999988999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=6e-48  Score=371.34  Aligned_cols=211  Identities=26%  Similarity=0.377  Sum_probs=179.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++
T Consensus         2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   77 (239)
T cd03296           2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG   77 (239)
T ss_pred             EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence            3789999999964  359999999999999999999999999999999999999999999999999876543  256899


Q ss_pred             EEcCCCcccc-ccHHHhcCcCCC---C----CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLGM---Y----SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~~---~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      |+||+|.+|. .|++||+.+...   .    ..    +++.++++..++.+..++.           ..+||||||||++
T Consensus        78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~  146 (239)
T cd03296          78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA  146 (239)
T ss_pred             EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence            9999999886 599999964311   1    11    2344556666665544443           4789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|++|||||||++||+.+++.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (239)
T cd03296         147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD  226 (239)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence            9999999999999999999999999999999998864  37899999999998765 99999999999999999999875


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       227 ~  227 (239)
T cd03296         227 H  227 (239)
T ss_pred             C
Confidence            3

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-48  Score=381.56  Aligned_cols=213  Identities=26%  Similarity=0.411  Sum_probs=181.7

Q ss_pred             EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----CCHHH
Q 044927          221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD  293 (467)
Q Consensus       221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~----~~~~~  293 (467)
                      |+++||+|+|++..   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..    .+...
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            78999999996432   258999999999999999999999999999999999999999999999999863    23456


Q ss_pred             HhcccEEEcCCC--ccccccHHHhcCcCC---CCCHH----HHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHH
Q 044927          294 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       294 ~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      +|+.++||+|+|  .+|..|+.||+.+..   ..+.+    ++.++++.+++. ++..           ....+||||||
T Consensus        82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk  150 (288)
T PRK13643         82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM  150 (288)
T ss_pred             HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence            788999999998  688889999997532   12222    344556666653 2333           33478999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~  441 (467)
                      ||++|||||+.+|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||||++|++|++++.|++++
T Consensus       151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~  230 (288)
T PRK13643        151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD  230 (288)
T ss_pred             HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999998864 4899999999999885 599999999999999999999


Q ss_pred             Hhc
Q 044927          442 LME  444 (467)
Q Consensus       442 l~~  444 (467)
                      +..
T Consensus       231 ~~~  233 (288)
T PRK13643        231 VFQ  233 (288)
T ss_pred             HHc
Confidence            865

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.2e-48  Score=391.88  Aligned_cols=211  Identities=25%  Similarity=0.359  Sum_probs=185.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++.  ++.+|
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig   79 (353)
T TIGR03265         4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG   79 (353)
T ss_pred             EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence            4899999999964  3489999999999999999999999999999999999999999999999999876653  67899


Q ss_pred             EEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+ .|++||+.+..   ..+    .+++.++++..++.++.++.|           .+||||||||++||||
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa  148 (353)
T TIGR03265        80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA  148 (353)
T ss_pred             EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence            9999999996 59999997531   122    234566677777766655544           7899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |+++|++||||||||+||+.++..+.+.|++..+  +.|+|+|||+++.+.. ||||++|++|++++.|+++++...
T Consensus       149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~  225 (353)
T TIGR03265       149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH  225 (353)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999988643  7899999999998765 999999999999999999999864

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.4e-48  Score=372.46  Aligned_cols=211  Identities=30%  Similarity=0.435  Sum_probs=179.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~  297 (467)
                      ++++||+++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+|++
T Consensus         2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            689999999962 2459999999999999999999999999999999999999999999999999877654   346788


Q ss_pred             cEEEcCCCcccc-ccHHHhcCcCCC------------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927          298 LSIIPQEPTLFR-GSVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG  361 (467)
Q Consensus       298 i~~v~Q~~~lf~-~tv~enl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG  361 (467)
                      ++|+||++.+|. .|++||+.+...            ..   .+++.++++..++.+..+           ....+||||
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG  149 (243)
T TIGR02315        81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG  149 (243)
T ss_pred             eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence            999999998886 599999964210            01   123445555555554433           345789999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~  438 (467)
                      ||||++|||||+.+|++|||||||++||+.+++.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus       150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~  229 (243)
T TIGR02315       150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA  229 (243)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence            9999999999999999999999999999999999999998863  37899999999999864 99999999999999999


Q ss_pred             hhhHh
Q 044927          439 PSKLM  443 (467)
Q Consensus       439 ~~~l~  443 (467)
                      ++++.
T Consensus       230 ~~~~~  234 (243)
T TIGR02315       230 PSELD  234 (243)
T ss_pred             HHHhC
Confidence            98863

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=3.9e-48  Score=366.14  Aligned_cols=202  Identities=28%  Similarity=0.411  Sum_probs=173.0

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .+++++|
T Consensus         1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~   76 (213)
T cd03259           1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM   76 (213)
T ss_pred             CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence            478999999964  359999999999999999999999999999999999999999999999999876543  4678999


Q ss_pred             EcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|. .|++||+.+..   ...    .+++.++++..++.++.++.|           .+||||||||++|||||
T Consensus        77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al  145 (213)
T cd03259          77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL  145 (213)
T ss_pred             EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence            999998886 59999996421   111    223556666666665555443           68999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      +.+|++|||||||++||+.++..+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999863  37999999999998765 9999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=6.4e-48  Score=369.68  Aligned_cols=213  Identities=26%  Similarity=0.423  Sum_probs=182.3

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR  295 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r  295 (467)
                      |+++|++++|++..  .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .++
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR   81 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            78999999996431  2599999999999999999999999999999999999999999999999998876543   347


Q ss_pred             cccEEEcCCCcccc-ccHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          296 TKLSIIPQEPTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~-~tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      +.++|+||++.+|. .|++||+.+.   ....    .+++.++++..++.+..++.           ..+||||||||++
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~  150 (233)
T cd03258          82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG  150 (233)
T ss_pred             hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence            78999999999987 5999999642   1122    23455666666666555443           3689999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|+++||||||++||+.++..+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            9999999999999999999999999999999999864  37999999999999875 99999999999999999988764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=7.1e-48  Score=393.76  Aligned_cols=213  Identities=27%  Similarity=0.447  Sum_probs=189.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++  +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.+++..++++++|
T Consensus         3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig   80 (402)
T PRK09536          3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA   80 (402)
T ss_pred             eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence            4899999999964  45999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             EEcCCCcc-ccccHHHhcCcCC-----CC---C---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          300 IIPQEPTL-FRGSVRTNLDPLG-----MY---S---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       300 ~v~Q~~~l-f~~tv~enl~~~~-----~~---~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ||+|++.+ |..|++||+.+..     ..   .   .+.+.++++.+++.++.++.           ..+||||||||++
T Consensus        81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~  149 (402)
T PRK09536         81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL  149 (402)
T ss_pred             EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence            99999987 5679999996431     11   1   23467778888887665543           3689999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+. .|||+++|++|++++.|++++++..
T Consensus       150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~  229 (402)
T PRK09536        150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA  229 (402)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence            9999999999999999999999999999999999874 4789999999999986 5999999999999999999998753

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.8e-48  Score=379.59  Aligned_cols=215  Identities=24%  Similarity=0.403  Sum_probs=180.9

Q ss_pred             cEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 044927          220 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~  292 (467)
                      .++++||+++|++..   +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...    +..
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            378999999996422   3599999999999999999999999999999999999999999999999998653    245


Q ss_pred             HHhcccEEEcCCC--ccccccHHHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhH
Q 044927          293 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ  362 (467)
Q Consensus       293 ~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq  362 (467)
                      .+|++||||||+|  .+|+.|+.||+.+..   ..+.++    +.++++.++           +++ .......+|||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~~LSgGq  150 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG-----------FSRDVMSQSPFQMSGGQ  150 (286)
T ss_pred             HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC-----------CChhhhhCCcccCCHHH
Confidence            6788999999997  578889999997531   123222    233344444           432 2334568899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecCh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~  439 (467)
                      |||++|||||+.+|++|||||||++||+.+...+.+.++++.  .++|+|++||+++.+. .||||++|++|++++.|++
T Consensus       151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~  230 (286)
T PRK13646        151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP  230 (286)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999999863  4899999999999876 5999999999999999999


Q ss_pred             hhHhcc
Q 044927          440 SKLMET  445 (467)
Q Consensus       440 ~~l~~~  445 (467)
                      +++.+.
T Consensus       231 ~~~~~~  236 (286)
T PRK13646        231 KELFKD  236 (286)
T ss_pred             HHHHhC
Confidence            998764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=3.7e-48  Score=367.60  Aligned_cols=202  Identities=28%  Similarity=0.410  Sum_probs=170.9

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH----H
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----L  294 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~----~  294 (467)
                      ++++||+++|++..  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...    .
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            47899999996421  45999999999999999999999999999999999999999999999999988765432    3


Q ss_pred             hcccEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          295 RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      +++++|+||++.+|.. |++||+.+..   ...    ++++.++++..++.+..++           ...+||||||||+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv  149 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV  149 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence            5689999999999876 9999996421   111    2234555666655544433           3478999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGEL  433 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~i  433 (467)
                      +|||||+.+|++|||||||++||+.++..+.+.|++..+  ++|+|++||+++.+..||++++|++|++
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            999999999999999999999999999999999998643  7999999999998888999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-47  Score=371.23  Aligned_cols=215  Identities=27%  Similarity=0.437  Sum_probs=182.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCCC--CHHH
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLKD  293 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~~  293 (467)
                      ++++||+++|++  ..+++|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++...  +...
T Consensus         2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~   79 (247)
T TIGR00972         2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE   79 (247)
T ss_pred             EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence            789999999964  34899999999999999999999999999999999999998     99999999998753  3456


Q ss_pred             HhcccEEEcCCCccccccHHHhcCcCC---C-CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          294 LRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      +++.++|+||++.+|+.|++||+.+..   . .+.    +++.++++..++.+.+.       ........+||||||||
T Consensus        80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr  152 (247)
T TIGR00972        80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR  152 (247)
T ss_pred             HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence            688999999999998899999996421   1 121    23455666666652221       12234457899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ++|||||+.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (247)
T TIGR00972       153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT  232 (247)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999987666899999999998865 99999999999999999999875

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-47  Score=378.56  Aligned_cols=214  Identities=27%  Similarity=0.457  Sum_probs=184.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~  297 (467)
                      .|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  ..+...+|+.
T Consensus         5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~   83 (283)
T PRK13636          5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES   83 (283)
T ss_pred             eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence            58999999999633 35999999999999999999999999999999999999999999999999984  3345678889


Q ss_pred             cEEEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          298 LSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       298 i~~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      ++|+||++  .+|+.|++||+.+..   ..+.    +.+.++++.+++.++.++           ...+||||||||++|
T Consensus        84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qrl~l  152 (283)
T PRK13636         84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVAI  152 (283)
T ss_pred             EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhC-----------CcccCCHHHHHHHHH
Confidence            99999998  567889999996421   1222    335556677777655443           347899999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||||+.+|++|||||||++||+.+...+.+.|+++.+  ++|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus       153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  232 (283)
T PRK13636        153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  232 (283)
T ss_pred             HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999988643  799999999999987 5999999999999999999998753

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=1e-47  Score=388.19  Aligned_cols=211  Identities=27%  Similarity=0.381  Sum_probs=184.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...++  .+++++
T Consensus         2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~   77 (353)
T PRK10851          2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG   77 (353)
T ss_pred             EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence            3889999999964  359999999999999999999999999999999999999999999999999976654  357899


Q ss_pred             EEcCCCccccc-cHHHhcCcCC-------CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG-------MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~-------~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ||||++.+|+. |++||+.+..       ..+    .+++.++++..++.++.++.|           .+||||||||++
T Consensus        78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva  146 (353)
T PRK10851         78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA  146 (353)
T ss_pred             EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence            99999999975 9999997531       112    234556777777766665554           689999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|++|||||||++||+.++..+.+.|+++.+  ++|+|+|||+++.+.. ||||++|++|+|++.|+++++..
T Consensus       147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~  226 (353)
T PRK10851        147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR  226 (353)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999988643  7899999999998765 99999999999999999999976


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       227 ~  227 (353)
T PRK10851        227 E  227 (353)
T ss_pred             C
Confidence            4

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-48  Score=380.15  Aligned_cols=214  Identities=27%  Similarity=0.382  Sum_probs=181.2

Q ss_pred             EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----CCHHH
Q 044927          221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----MGLKD  293 (467)
Q Consensus       221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~----~~~~~  293 (467)
                      ++++||+++|++..   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..    .+...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999996421   359999999999999999999999999999999999999999999999999863    23456


Q ss_pred             HhcccEEEcCCC--ccccccHHHhcCcCC---CCCHH----HHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHH
Q 044927          294 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       294 ~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      .|+.+|||||+|  .+|+.|++||+.+..   ..+.+    .+.++++.+++. +..           .....+||||||
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq~  151 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL-----------ARSPFELSGGQM  151 (290)
T ss_pred             HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh-----------hCCcccCCHHHH
Confidence            788899999997  578889999996431   12222    344556666664 222           233478999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~  440 (467)
                      ||++|||||+.+|++|||||||++||+.+...+.+.|+++.  .+.|+|++||+++.+.. ||||++|++|++++.|+++
T Consensus       152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~  231 (290)
T PRK13634        152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR  231 (290)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999998864  37999999999998864 9999999999999999999


Q ss_pred             hHhcc
Q 044927          441 KLMET  445 (467)
Q Consensus       441 ~l~~~  445 (467)
                      ++.+.
T Consensus       232 ~~~~~  236 (290)
T PRK13634        232 EIFAD  236 (290)
T ss_pred             HHhcC
Confidence            88653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-47  Score=371.07  Aligned_cols=217  Identities=21%  Similarity=0.399  Sum_probs=187.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHHhc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~  296 (467)
                      .++++|+++.|++  +++|+|+||++++||+++|+||||||||||+++|+|+++   |++|+|.++|+++.+.+...+|+
T Consensus         2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~   79 (246)
T PRK14269          2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK   79 (246)
T ss_pred             ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence            3789999999963  359999999999999999999999999999999999984   68999999999998877777888


Q ss_pred             ccEEEcCCCccccccHHHhcCcCCC---C------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          297 KLSIIPQEPTLFRGSVRTNLDPLGM---Y------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~tv~enl~~~~~---~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      .++|+||++.+|+.|++||+.+...   .      .++++.++++.+++.+++..       ...+.+.+||||||||++
T Consensus        80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~  152 (246)
T PRK14269         80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC  152 (246)
T ss_pred             hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence            9999999999999999999964311   1      11234556677766544332       234456789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus       153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  231 (246)
T PRK14269        153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN  231 (246)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence            99999999999999999999999999999999998766899999999999886 4999999999999999999998753

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=7.6e-48  Score=389.86  Aligned_cols=213  Identities=24%  Similarity=0.366  Sum_probs=186.3

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc--cEEEEcCEeCCCCCHHHHh
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN--GRILIDGLDICSMGLKDLR  295 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~--G~i~i~g~~i~~~~~~~~r  295 (467)
                      .+.++++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++  |+|.++|.++.+.++  .+
T Consensus         3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~   78 (362)
T TIGR03258         3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK   78 (362)
T ss_pred             ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence            357999999999964  359999999999999999999999999999999999999999  999999999977655  35


Q ss_pred             cccEEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          296 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      +.|+||+|++.+|+. |++||+.+..   ..+.    +++.++++..++.++.++.|           .+||||||||++
T Consensus        79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva  147 (362)
T TIGR03258        79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA  147 (362)
T ss_pred             CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence            789999999999975 9999997421   1222    34556677777776666655           689999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC---CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP---GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |||||+.+|++|||||||++||+.++..+.+.|+++.+   +.|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus       148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999987543   6899999999998765 9999999999999999999998


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       228 ~~  229 (362)
T TIGR03258       228 DA  229 (362)
T ss_pred             hC
Confidence            64

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-48  Score=368.60  Aligned_cols=211  Identities=27%  Similarity=0.404  Sum_probs=185.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE---eCCCCCHHHHhc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMGLKDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~---~i~~~~~~~~r~  296 (467)
                      +|+++|+++.|+.  ..+++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||.   |.+...  .-.+
T Consensus         2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R   77 (345)
T COG1118           2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDR   77 (345)
T ss_pred             ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhc
Confidence            4788999999964  35899999999999999999999999999999999999999999999999   555433  3346


Q ss_pred             ccEEEcCCCcccc-ccHHHhcCcCCC-----C----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          297 KLSIIPQEPTLFR-GSVRTNLDPLGM-----Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       297 ~i~~v~Q~~~lf~-~tv~enl~~~~~-----~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      +||||+|+..||+ .||.+||.|+-.     .    ...++.+.++.+++..+-++.|           .+||||||||+
T Consensus        78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV  146 (345)
T COG1118          78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV  146 (345)
T ss_pred             ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence            7999999999986 599999987531     2    2345677788899988888888           78999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ||||||+.+|++|+||||+++||..-++.+...|++...  +.|+++||||.+++.. ||||++|++|+|...|+|+|+.
T Consensus       147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~  226 (345)
T COG1118         147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY  226 (345)
T ss_pred             HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence            999999999999999999999999999999999988532  8999999999998765 9999999999999999999997


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       227 ~~  228 (345)
T COG1118         227 DH  228 (345)
T ss_pred             cC
Confidence            64

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-47  Score=367.54  Aligned_cols=208  Identities=23%  Similarity=0.357  Sum_probs=177.0

Q ss_pred             cEEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 044927          220 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~  294 (467)
                      .++++||+++|+++.  .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...   +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL   84 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence            489999999996432  35999999999999999999999999999999999999999999999999998876543   3


Q ss_pred             h-cccEEEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          295 R-TKLSIIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       295 r-~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      | +.++|+||++.+|+. |++||+.+.   .....    +++.++++..++.+...           ....+||||||||
T Consensus        85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr  153 (233)
T PRK11629         85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGERQR  153 (233)
T ss_pred             HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHH
Confidence            3 679999999998875 999998641   11121    23455566665544433           3447899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDL  438 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~  438 (467)
                      ++||||++.+|++|||||||++||+.+...+.+.|++..  +++|+|++||+++.+..+|++++|++|+|++.++
T Consensus       154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            999999999999999999999999999999999999863  4799999999999999889999999999998875

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.4e-47  Score=364.61  Aligned_cols=211  Identities=27%  Similarity=0.430  Sum_probs=176.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcccE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS  299 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i~  299 (467)
                      |+++||+++|++  .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +++++
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (222)
T cd03224           1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG   78 (222)
T ss_pred             CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence            478999999964  359999999999999999999999999999999999999999999999999987776554 67799


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC-CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~-~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      |+||++.+|.. |++||+.+... ...    +++.++++..         + +++........+||||||||++|||||+
T Consensus        79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LS~G~~qrv~laral~  148 (222)
T cd03224          79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF---------P-RLKERRKQLAGTLSGGEQQMLAIARALM  148 (222)
T ss_pred             EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH---------H-hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence            99999999886 99999964321 111    1122222222         1 1222334455789999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ++|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            9999999999999999999999999998864 57999999999998765 9999999999999999988765

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.6e-47  Score=388.89  Aligned_cols=211  Identities=24%  Similarity=0.374  Sum_probs=187.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.  ++.++
T Consensus        14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig   89 (375)
T PRK09452         14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN   89 (375)
T ss_pred             eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence            5999999999964  3589999999999999999999999999999999999999999999999999876654  57899


Q ss_pred             EEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+. ||+||+.+..   ..+    .+++.++++..++.++.++.|           .+||||||||++||||
T Consensus        90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa  158 (375)
T PRK09452         90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA  158 (375)
T ss_pred             EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999965 9999997531   122    234567788888888777776           6899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |+++|++||||||||+||+.++..+.+.|+++.+  +.|+|+|||+++.+. .||||++|++|+|++.|++++++..
T Consensus       159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~  235 (375)
T PRK09452        159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE  235 (375)
T ss_pred             HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999988643  799999999999876 4999999999999999999999864

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-47  Score=380.74  Aligned_cols=215  Identities=21%  Similarity=0.301  Sum_probs=181.5

Q ss_pred             cEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--------
Q 044927          220 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--------  288 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--------  288 (467)
                      .|+++||+++|++..   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..        
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            388999999996432   258999999999999999999999999999999999999999999999887532        


Q ss_pred             ----------------CCHHHHhcccEEEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChH-HHHHh
Q 044927          289 ----------------MGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLK-ATISR  342 (467)
Q Consensus       289 ----------------~~~~~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~-~~i~~  342 (467)
                                      .+...+++++|||||+|  .+|..|++||+.+..   ..+.    +++.++++.+++. ++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                            13456788999999986  578889999997532   1222    3345666666664 34443


Q ss_pred             CCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-
Q 044927          343 LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-  420 (467)
Q Consensus       343 l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-  420 (467)
                                 ...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. 
T Consensus       162 -----------~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~  230 (305)
T PRK13651        162 -----------SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE  230 (305)
T ss_pred             -----------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence                       347899999999999999999999999999999999999999999998864 4899999999999875 


Q ss_pred             hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          421 DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       421 ~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      .||||++|++|++++.|+++++.+.
T Consensus       231 ~adrv~vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        231 WTKRTIFFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             hCCEEEEEECCEEEEECCHHHHhcC
Confidence            5999999999999999999998754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=5e-48  Score=390.28  Aligned_cols=200  Identities=25%  Similarity=0.379  Sum_probs=177.8

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcccEEEcCCCccccc
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG  310 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~  310 (467)
                      +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+..++    |+.++||||++.+|+.
T Consensus         6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            358999999999999999999999999999999999999999999999999999888777    7899999999999975


Q ss_pred             -cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEee
Q 044927          311 -SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD  382 (467)
Q Consensus       311 -tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLD  382 (467)
                       |++||+.+..   ..+    .+++.++++.+++.++.++.|           .+||||||||++|||||+.+|++||||
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD  154 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD  154 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence             9999996421   122    244566778888776666655           689999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          383 EATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       383 Epts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |||++||+.++..+++.+.++.  .++|+|+|||+++.+. .||||++|++|++++.|+++++++.
T Consensus       155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~  220 (363)
T TIGR01186       155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN  220 (363)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence            9999999999999999998863  3799999999999865 5999999999999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.9e-48  Score=380.24  Aligned_cols=212  Identities=28%  Similarity=0.497  Sum_probs=186.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|+. ...+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+...- ..+.|+++|
T Consensus         4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig   81 (293)
T COG1131           4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG   81 (293)
T ss_pred             eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence            4789999999963 24599999999999999999999999999999999999999999999999988765 677899999


Q ss_pred             EEcCCCccccc-cHHHhcCcCC----C---CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG----M---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~----~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      |+||+|.+++. |++||+.+..    .   ..++++.++++..++.+..           ......||+|||||++||+|
T Consensus        82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a  150 (293)
T COG1131          82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA  150 (293)
T ss_pred             EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence            99999998865 9999997532    1   1245677888888877632           12347899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-C-ceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP-G-STVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |+.+|++|||||||+||||.+...+++.|+++.+ + +||+++||.++.++. ||||++|++|++++.|+++++..
T Consensus       151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~  226 (293)
T COG1131         151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE  226 (293)
T ss_pred             HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            9999999999999999999999999999999754 5 799999999999987 99999999999999999998764

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-47  Score=370.81  Aligned_cols=217  Identities=23%  Similarity=0.395  Sum_probs=184.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~  292 (467)
                      .|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+..
T Consensus         6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (253)
T PRK14242          6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV   83 (253)
T ss_pred             EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence            5999999999964  359999999999999999999999999999999999974     589999999999864  3445


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCC---CC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+|+.++|+||++.+|+.|++||+.+..   .. .    .+++.++++.+++.+.+.       ...+....+|||||||
T Consensus        84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q  156 (253)
T PRK14242         84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQ  156 (253)
T ss_pred             HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHH
Confidence            6788999999999999889999996421   11 1    234555666666644322       1234456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14242        157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF  236 (253)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999987668999999999998865 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       237 ~~  238 (253)
T PRK14242        237 TR  238 (253)
T ss_pred             cC
Confidence            53

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.2e-47  Score=369.83  Aligned_cols=215  Identities=26%  Similarity=0.401  Sum_probs=181.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (242)
T cd03295           1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY   79 (242)
T ss_pred             CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence            4689999999742 359999999999999999999999999999999999999999999999999988777778889999


Q ss_pred             EcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|. .|++||+.+..   ..+    .+++.++++..++.+         .........+||||||||++||||+
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral  150 (242)
T cd03295          80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL  150 (242)
T ss_pred             EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence            999999886 59999996421   112    123344455544432         0123344578999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +++|++|||||||++||+.+.+.+.+.|++..  .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  226 (242)
T cd03295         151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS  226 (242)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence            99999999999999999999999999999864  37999999999998764 999999999999999999988653

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=1.5e-46  Score=368.83  Aligned_cols=217  Identities=24%  Similarity=0.361  Sum_probs=192.0

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      .+.|+++|+++..    +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             .
T Consensus        37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~   99 (282)
T cd03291          37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R   99 (282)
T ss_pred             CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence            4569999999852    3489999999999999999999999999999999999999999999998             3


Q ss_pred             cEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      ++|++|++.+|+.|++||+.+.....+.++.+.++.+++.+.+..+|.++++.+++.+..||||||||++|||||+.+|+
T Consensus       100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  179 (282)
T cd03291         100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD  179 (282)
T ss_pred             EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999997543333445566778888999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHH-HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHH
Q 044927          378 ILVLDEATASIDSATDAILQRII-REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK  451 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~  451 (467)
                      +|||||||++||+.++..+.+.+ +...+++|+|++||+++.+..||++++|++|++++.|+++++.+....|.+
T Consensus       180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~  254 (282)
T cd03291         180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSS  254 (282)
T ss_pred             EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHH
Confidence            99999999999999999888754 555567999999999999888999999999999999999998865444443

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.2e-47  Score=360.74  Aligned_cols=198  Identities=27%  Similarity=0.427  Sum_probs=171.9

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII  301 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v  301 (467)
                      +++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ...+++++|+
T Consensus         1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~   76 (205)
T cd03226           1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV   76 (205)
T ss_pred             CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence            368999999642 359999999999999999999999999999999999999999999999998753   4567789999


Q ss_pred             cCCC--ccccccHHHhcCcCC-C--CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          302 PQEP--TLFRGSVRTNLDPLG-M--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       302 ~Q~~--~lf~~tv~enl~~~~-~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      ||++  .+|..|++||+.+.. .  ...+++.++++.+++.++.++.|           ..||||||||++|||||+.+|
T Consensus        77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p  145 (205)
T cd03226          77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK  145 (205)
T ss_pred             ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence            9997  367789999997532 1  12346777888888876665554           579999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927          377 RILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELV  434 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv  434 (467)
                      ++|||||||++||+.+++.+.+.|++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus       146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            999999999999999999999999886 458999999999999875 9999999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=2.7e-47  Score=358.03  Aligned_cols=199  Identities=26%  Similarity=0.427  Sum_probs=180.4

Q ss_pred             EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      ++++||+++|++..   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence            47899999997542   3599999999999999999999999999999999999999999999998             5


Q ss_pred             cEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      |+|+||+|.+|+.|++||+.+.....+++..++++.+++.+++..+|.|+++.+++...+||+|||||++||||++.+|+
T Consensus        68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~  147 (204)
T cd03250          68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD  147 (204)
T ss_pred             EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999997644445566777888889999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHH-HHHHH-CCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          378 ILVLDEATASIDSATDAILQR-IIREE-FPGSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~-~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      ++||||||++||+.+.+.+.+ .+++. .+++|+|++||+++.+..||++++|++|+
T Consensus       148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            999999999999999888887 45554 34799999999999988899999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.1e-47  Score=364.82  Aligned_cols=208  Identities=26%  Similarity=0.407  Sum_probs=179.4

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus         1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~   77 (220)
T cd03265           1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI   77 (220)
T ss_pred             CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence            478999999964  3599999999999999999999999999999999999999999999999988653 3566788999


Q ss_pred             EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+++. |+++|+.+..   ...    ++++.++++..++.+..++.|           .+||||||||++||||+
T Consensus        78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al  146 (220)
T cd03265          78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL  146 (220)
T ss_pred             ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence            9999988875 9999995421   111    234566777777766555443           68999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      +.+|+++||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus       147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            99999999999999999999999999998853 3 7899999999998875 999999999999999988764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.4e-47  Score=361.95  Aligned_cols=202  Identities=29%  Similarity=0.431  Sum_probs=176.0

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|+++.|++  .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++|
T Consensus         1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   76 (211)
T cd03264           1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY   76 (211)
T ss_pred             CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence            478999999964  35999999999999 99999999999999999999999999999999999987766 677889999


Q ss_pred             EcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|.. |++||+.+.   ...+    .+++.++++..++.+..+..|           .+||||||||++|||||
T Consensus        77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al  145 (211)
T cd03264          77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI-----------GSLSGGMRRRVGIAQAL  145 (211)
T ss_pred             ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch-----------hhCCHHHHHHHHHHHHH
Confidence            9999999876 999998642   1111    234566777777766554433           67999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      +.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|
T Consensus       146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999999999987667999999999999875 9999999999998765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-47  Score=372.47  Aligned_cols=215  Identities=27%  Similarity=0.445  Sum_probs=186.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~   86 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG   86 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence            58999999999643446999999999999999999999999999999999999999999999999998777778889999


Q ss_pred             EEcCCCc--cccccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          300 IIPQEPT--LFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       300 ~v~Q~~~--lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |+||++.  ++..|++||+.+..   ..+.+    .+.++++..++.++.++.+           .+||||||||++|||
T Consensus        87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lar  155 (271)
T PRK13632         87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIAS  155 (271)
T ss_pred             EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHHH
Confidence            9999983  45679999996421   12222    2455667777766655544           789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus       156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  232 (271)
T PRK13632        156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN  232 (271)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence            9999999999999999999999999999999864 3 4899999999998888999999999999999999887653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-47  Score=374.57  Aligned_cols=214  Identities=24%  Similarity=0.399  Sum_probs=186.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   81 (277)
T PRK13652          3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG   81 (277)
T ss_pred             eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence            48899999999643 34899999999999999999999999999999999999999999999999998777777888999


Q ss_pred             EEcCCCc--cccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          300 IIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       300 ~v~Q~~~--lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |+||++.  +|..|+.||+.+..   ..+.    +.+.++++.+++.+...+.|           ..||||||||++|||
T Consensus        82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar  150 (277)
T PRK13652         82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG  150 (277)
T ss_pred             EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence            9999973  67789999996421   1222    23566777777776666554           689999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||+.+|++|||||||++||+.+.+.+.+.++++.+  ++|+|++||+++.+. .|||+++|++|++++.|+++++++.
T Consensus       151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  228 (277)
T PRK13652        151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ  228 (277)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence            99999999999999999999999999999988643  799999999999985 5999999999999999999998753

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-47  Score=375.60  Aligned_cols=214  Identities=23%  Similarity=0.412  Sum_probs=188.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---cEEEEcCEeCCCCCHHHHhc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~---G~i~i~g~~i~~~~~~~~r~  296 (467)
                      .++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|.++...+...+++
T Consensus         5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~   84 (282)
T PRK13640          5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE   84 (282)
T ss_pred             eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence            599999999996433459999999999999999999999999999999999999988   89999999998777777888


Q ss_pred             ccEEEcCCCc--cccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          297 KLSIIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       297 ~i~~v~Q~~~--lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ++||+||++.  +++.|+.||+.+..   ..+.    +++.++++.+++.++.++.|           .+|||||+||++
T Consensus        85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv~  153 (282)
T PRK13640         85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVA  153 (282)
T ss_pred             heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHH
Confidence            9999999984  56789999996431   1222    33566778888877666655           789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|++|||||||++||+.++..+.+.|+++.  .++|+|++||+++.+..|||+++|++|++++.|+++++..
T Consensus       154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999999999999998864  3799999999999988899999999999999999998765

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=2e-47  Score=362.55  Aligned_cols=205  Identities=26%  Similarity=0.443  Sum_probs=175.6

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ++++||+++|++..  .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++|+++
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence            68999999996431  159999999999999999999999999999999999999999999999999875 345678899


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      +|+||++.+|.. |++||+.+..   ...    .+++.++++..++.+..++           ...+||||||||++|||
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar  149 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR  149 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence            999999999885 9999995321   112    2344556666666655444           34789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      |++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            9999999999999999999999999999998864 47999999999998765 9999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-47  Score=373.59  Aligned_cols=212  Identities=25%  Similarity=0.440  Sum_probs=183.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhcccE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLS  299 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~r~~i~  299 (467)
                      ++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.++
T Consensus         2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence            7899999999633 34999999999999999999999999999999999999999999999999987765 356788999


Q ss_pred             EEcCCCc--cccccHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          300 IIPQEPT--LFRGSVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       300 ~v~Q~~~--lf~~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |+||+|.  ++..|+.||+.+...   .+    .+++.++++..++.++.++.           ...||||||||++|||
T Consensus        81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar  149 (274)
T PRK13644         81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG  149 (274)
T ss_pred             EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence            9999985  466799999965321   22    23345566667776655543           3789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ||+.+|++|||||||++||+.++..+.+.++++. +++|+|++||+++.+..|||+++|++|++++.|+++++..
T Consensus       150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  224 (274)
T PRK13644        150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS  224 (274)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999999999999999999999998864 4899999999999998899999999999999999998765

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-47  Score=389.03  Aligned_cols=211  Identities=25%  Similarity=0.338  Sum_probs=184.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  +++++
T Consensus         3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~   78 (369)
T PRK11000          3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG   78 (369)
T ss_pred             EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence            4899999999964  3589999999999999999999999999999999999999999999999999876543  56799


Q ss_pred             EEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+. |++||+.+..   ..+    .+++.++++..++.++.++.|           .+||||||||++||||
T Consensus        79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra  147 (369)
T PRK11000         79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT  147 (369)
T ss_pred             EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999965 9999997531   122    234566777777766655554           6899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |+.+|++|||||||++||+.+++.+.+.|+++.  .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999999999998863  37899999999998765 999999999999999999999763

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=3e-47  Score=365.76  Aligned_cols=211  Identities=28%  Similarity=0.396  Sum_probs=179.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus         2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~   78 (236)
T TIGR03864         2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV   78 (236)
T ss_pred             EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence            689999999963  3599999999999999999999999999999999999999999999999998776544 3458999


Q ss_pred             EcCCCccc-cccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLF-RGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf-~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.++ ..|+++|+.+..   ....    +++.+.++..++           +........+||||||||++|||||
T Consensus        79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~laral  147 (236)
T TIGR03864        79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARAL  147 (236)
T ss_pred             eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHH
Confidence            99999875 569999996421   1221    123334444444           3334455578999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +++|+++||||||++||+.+++.+.+.|+++.  +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus       148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence            99999999999999999999999999999864  47999999999999888999999999999999999998764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-47  Score=368.77  Aligned_cols=217  Identities=24%  Similarity=0.353  Sum_probs=183.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~~  292 (467)
                      .++++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++..  .+..
T Consensus         7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   84 (254)
T PRK14273          7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL   84 (254)
T ss_pred             eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence            6999999999964  3599999999999999999999999999999999999997     48999999998753  2345


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCCC----CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+|+.++|+||++.+|..|++||+.+...    ..    ++.+.++++.+++.+.+.   ..+    .....+|||||||
T Consensus        85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~----~~~~~~LSgG~~q  157 (254)
T PRK14273         85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKL----NTNALSLSGGQQQ  157 (254)
T ss_pred             HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHH----hCCcccCCHHHHH
Confidence            67889999999999998999999964211    11    233455666666533221   122    3345789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998668999999999999765 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       238 ~~  239 (254)
T PRK14273        238 FN  239 (254)
T ss_pred             hC
Confidence            53

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2.2e-47  Score=359.67  Aligned_cols=202  Identities=26%  Similarity=0.408  Sum_probs=176.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  ..+++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~   76 (208)
T cd03268           1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA   76 (208)
T ss_pred             CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence            478999999953  3599999999999999999999999999999999999999999999999988654  456788999


Q ss_pred             EcCCCcccc-ccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      +||++.+|. .|++||+.+..   ...++++.++++..++.+..++.+           ..||||||||++||||++.+|
T Consensus        77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al~~~p  145 (208)
T cd03268          77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV-----------KGFSLGMKQRLGIALALLGNP  145 (208)
T ss_pred             ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH-----------hhCCHHHHHHHHHHHHHhcCC
Confidence            999998875 69999996421   224556777888888876655533           679999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          377 RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      +++||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999998864 47999999999998875 9999999999998765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2e-47  Score=384.19  Aligned_cols=211  Identities=24%  Similarity=0.414  Sum_probs=179.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||+++|++  ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.+|
T Consensus        41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig  117 (340)
T PRK13536         41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG  117 (340)
T ss_pred             eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence            5999999999964  35999999999999999999999999999999999999999999999999987643 46788999


Q ss_pred             EEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      |+||++.+|. .|+.||+.+..   ..+..    .+.++++.+++.+.           ......+||||||||++||||
T Consensus       118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv~lA~a  186 (340)
T PRK13536        118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRLTLARA  186 (340)
T ss_pred             EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHHHHHHH
Confidence            9999998875 59999996422   12222    22334444444332           223346899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |+++|++|||||||+|||+.++..+++.|+++. .|+|+|++||+++.++. ||||++|++|++++.|+++++.+
T Consensus       187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999999999999864 48999999999999875 99999999999999999999865

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-47  Score=373.14  Aligned_cols=216  Identities=26%  Similarity=0.407  Sum_probs=188.0

Q ss_pred             cEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          220 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      .++++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            48999999999743 23589999999999999999999999999999999999999999999999999877777788999


Q ss_pred             EEEcCCCc--cccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEPT--LFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~~--lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +|+||++.  ++..|+.||+.+..   ....    +++.++++.+++.++..+.|           ..||||||||++||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lA  152 (277)
T PRK13642         84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP-----------ARLSGGQKQRVAVA  152 (277)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence            99999983  56789999996421   1222    23456777777776655543           68999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |||+++|++|||||||++||+.+.+.+.+.++++.+  ++|+|++||+++.+..||+|++|++|++++.|+++++++..
T Consensus       153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  231 (277)
T PRK13642        153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS  231 (277)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence            999999999999999999999999999999988643  79999999999998889999999999999999999987643

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=2.6e-47  Score=365.16  Aligned_cols=211  Identities=27%  Similarity=0.459  Sum_probs=178.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcccE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKLS  299 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i~  299 (467)
                      ++++||+++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (232)
T cd03218           1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG   78 (232)
T ss_pred             CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence            478999999963  359999999999999999999999999999999999999999999999999887765543 56799


Q ss_pred             EEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      |+||++.+|+. |++||+.+..   ....    +++.+.++..++.           ........+||||||||++||||
T Consensus        79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~a  147 (232)
T cd03218          79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIARA  147 (232)
T ss_pred             EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHHH
Confidence            99999999886 9999996421   1111    1223344444443           33344557899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            999999999999999999999999999998864 47899999999987765 99999999999999999998864

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=3.1e-47  Score=378.69  Aligned_cols=211  Identities=25%  Similarity=0.390  Sum_probs=179.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++|++++|++  ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+++|
T Consensus         4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~   80 (303)
T TIGR01288         4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG   80 (303)
T ss_pred             EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence            4899999999964  3599999999999999999999999999999999999999999999999998653 356688999


Q ss_pred             EEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      |+||++.+|. .|++||+.+..   ..+..    ++.++++.+++.+..+           ....+||||||||++||||
T Consensus        81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~a  149 (303)
T TIGR01288        81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-----------VRVALLSGGMKRRLTLARA  149 (303)
T ss_pred             EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CchhhCCHHHHHHHHHHHH
Confidence            9999998885 59999996321   12222    2334455555543332           2346799999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |+.+|++|||||||++||+.+...+.+.|++.. +|+|+|++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus       150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999999999999863 58999999999999875 99999999999999999999864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.7e-47  Score=368.11  Aligned_cols=219  Identities=26%  Similarity=0.413  Sum_probs=185.7

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CC
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MG  290 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~  290 (467)
                      .+.++++|++++|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+
T Consensus        11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~   88 (260)
T PRK10744         11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD   88 (260)
T ss_pred             CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence            346999999999964  359999999999999999999999999999999999986     589999999999853  34


Q ss_pred             HHHHhcccEEEcCCCccccccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       291 ~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      ...+|++++|+||++.+|+.|+++|+.+..    ..+.    +++.++++.+++.+.+       ....+....+|||||
T Consensus        89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq  161 (260)
T PRK10744         89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ  161 (260)
T ss_pred             hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence            567788999999999999899999996421    1222    3455566666653322       122345567899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~  441 (467)
                      |||++|||||+++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus       162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  241 (260)
T PRK10744        162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT  241 (260)
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999987667899999999998865 99999999999999999999


Q ss_pred             Hhcc
Q 044927          442 LMET  445 (467)
Q Consensus       442 l~~~  445 (467)
                      +...
T Consensus       242 ~~~~  245 (260)
T PRK10744        242 IFTK  245 (260)
T ss_pred             HHhC
Confidence            8753

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-47  Score=371.80  Aligned_cols=215  Identities=21%  Similarity=0.388  Sum_probs=184.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus         7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   86 (269)
T PRK13648          7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG   86 (269)
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence            58999999999754345899999999999999999999999999999999999999999999999998877778889999


Q ss_pred             EEcCCCc-cc-cccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          300 IIPQEPT-LF-RGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       300 ~v~Q~~~-lf-~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |+||++. +| ..|+++|+.+..   ....    +++.++++..++.++.+.           ...+||||||||++|||
T Consensus        87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar  155 (269)
T PRK13648         87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG  155 (269)
T ss_pred             EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence            9999985 44 558999986421   1122    234556666666554433           34789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |++.+|++|||||||++||+.+.+.+.+.|++..  .++|+|++||+++.+..||||++|++|++++.|+++++...
T Consensus       156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  232 (269)
T PRK13648        156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH  232 (269)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence            9999999999999999999999999999998864  37899999999998888999999999999999999998754

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=2.4e-47  Score=362.66  Aligned_cols=204  Identities=26%  Similarity=0.340  Sum_probs=174.3

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ++++|++++|++..  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..     .++.+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence            47899999996421  359999999999999999999999999999999999999999999999998763     36789


Q ss_pred             EEEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      +|+||++.+|. .|++||+.+..   ...    .+++.++++..++.+...+.|           .+||||||||++|||
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~  144 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR  144 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence            99999999887 59999996421   111    234566777777766555544           679999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEe--CCEEEEecChh
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLS--YGELVEYDLPS  440 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~--~G~iv~~g~~~  440 (467)
                      ||+.+|+++||||||++||+.++..+.+.|++..  .++|+|++||+++.+.. ||++++|+  +|++++.++.+
T Consensus       145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence            9999999999999999999999999999998863  37999999999998765 99999999  79999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=3.2e-47  Score=378.17  Aligned_cols=210  Identities=21%  Similarity=0.367  Sum_probs=182.5

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||
T Consensus         3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~   79 (301)
T TIGR03522         3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY   79 (301)
T ss_pred             EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence            789999999963  459999999999999999999999999999999999999999999999999876 34567889999


Q ss_pred             EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|+. |+.||+.+..   ..+    .+++.++++..++.+..           ......||||||||++|||||
T Consensus        80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al  148 (301)
T TIGR03522        80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL  148 (301)
T ss_pred             ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence            9999999876 9999996421   112    22344555555554443           344578999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +++|++|||||||+|||+.+.+.+++.++++.+++|+|++||+++.++. ||||++|++|++++.|+++++.+
T Consensus       149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence            9999999999999999999999999999998778999999999998876 99999999999999999999865

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=4.8e-47  Score=360.67  Aligned_cols=203  Identities=28%  Similarity=0.438  Sum_probs=172.0

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR  295 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r  295 (467)
                      ++++||+++|++..  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+   +|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            68999999996421  35999999999999999999999999999999999999999999999999998776543   33


Q ss_pred             -cccEEEcCCCcccc-ccHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          296 -TKLSIIPQEPTLFR-GSVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       296 -~~i~~v~Q~~~lf~-~tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                       +.++|+||++.+|+ .|++||+.+.   ....    .+++.++++..++.+..++           ....||||||||+
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv  150 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV  150 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence             67999999999886 5999999642   1122    1234455666665544443           3478999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEE
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELV  434 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv  434 (467)
                      +|||||+++|++|||||||++||+.++..+.+.|+++.  .++|+|++||+++.+..||++++|++|+++
T Consensus       151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            99999999999999999999999999999999998864  378999999999998889999999999985

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.5e-47  Score=360.09  Aligned_cols=200  Identities=33%  Similarity=0.469  Sum_probs=171.2

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII  301 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v  301 (467)
                      +++|++++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence            36899999964324599999999999999999999999999999999999999999999999999877777788899999


Q ss_pred             cCCCc--cccccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          302 PQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       302 ~Q~~~--lf~~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ||++.  ++..|++||+.+..   ...    .+++.+.++..++.+.+++.           ...||||||||++|||||
T Consensus        81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~laral  149 (211)
T cd03225          81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGVL  149 (211)
T ss_pred             ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence            99984  56789999996421   122    12345566666665554443           378999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      +++|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus       150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999999999998864 47999999999999887 99999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-47  Score=372.68  Aligned_cols=215  Identities=25%  Similarity=0.402  Sum_probs=187.4

Q ss_pred             cEEEEeEEEEeCCC----CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHH
Q 044927          220 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDL  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~----~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~  294 (467)
                      .++++|++++|++.    .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            58999999999642    245999999999999999999999999999999999999999999999999987643 3567


Q ss_pred             hcccEEEcCCCc--cccccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          295 RTKLSIIPQEPT--LFRGSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       295 r~~i~~v~Q~~~--lf~~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      +++++|+||+|.  +|..|+.+|+.+..   ..+    ++++.++++.+++.++.++.|           .+||||||||
T Consensus        84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr  152 (280)
T PRK13633         84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR  152 (280)
T ss_pred             hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence            889999999984  66668999996532   112    234667788888877776655           6899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ++|||||+.+|+++||||||++||+.++..+.+.|+++.  .++|+|++||+++.+..|||+++|++|++++.|+++++.
T Consensus       153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999999863  389999999999998889999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       233 ~~  234 (280)
T PRK13633        233 KE  234 (280)
T ss_pred             cC
Confidence            54

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-47  Score=370.79  Aligned_cols=212  Identities=28%  Similarity=0.424  Sum_probs=185.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus        11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   88 (265)
T PRK10575         11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA   88 (265)
T ss_pred             eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence            5999999999963  35999999999999999999999999999999999999999999999999998777778888999


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC--------C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      |+||++.++.. |+.||+.+...        .   .++++.++++.+++.+.+++.|           .+||||||||++
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~  157 (265)
T PRK10575         89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW  157 (265)
T ss_pred             EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence            99999877654 99999964210        1   1234566777778776655544           679999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|++|||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (265)
T PRK10575        158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR  237 (265)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence            9999999999999999999999999999999998863  37999999999999864 99999999999999999998864

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=5.2e-47  Score=365.44  Aligned_cols=212  Identities=22%  Similarity=0.345  Sum_probs=180.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i  298 (467)
                      .|+++|+++.|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus         2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (242)
T TIGR03411         2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI   79 (242)
T ss_pred             eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence            3789999999964  359999999999999999999999999999999999999999999999999887765543 5579


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCCC---------------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGMY---------------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~~---------------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      +|+||++.+|++ |++||+.+....               .++++.++++..++           +.........|||||
T Consensus        80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Ge  148 (242)
T TIGR03411        80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAGLLSHGQ  148 (242)
T ss_pred             eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHH
Confidence            999999999986 999999642110               01123334444433           333445557899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~  441 (467)
                      +||++||||++.+|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus       149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~  228 (242)
T TIGR03411       149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ  228 (242)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence            99999999999999999999999999999999999999987668999999999999875 99999999999999999999


Q ss_pred             Hhc
Q 044927          442 LME  444 (467)
Q Consensus       442 l~~  444 (467)
                      +..
T Consensus       229 ~~~  231 (242)
T TIGR03411       229 VQA  231 (242)
T ss_pred             Hhc
Confidence            864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=5.7e-47  Score=379.89  Aligned_cols=215  Identities=26%  Similarity=0.409  Sum_probs=182.3

Q ss_pred             cEEEEeEEEEeCCC-----------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 044927          220 RIELEDLKVRYRPN-----------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS  288 (467)
Q Consensus       220 ~i~~~~vs~~y~~~-----------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~  288 (467)
                      .++++||+++|+..           ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~   87 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG   87 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence            59999999999631           2358999999999999999999999999999999999999999999999999988


Q ss_pred             CCHH---HHhcccEEEcCCC--cccc-ccHHHhcCc----C-CCCCHH----HHHHHHHHcChH-HHHHhCCCccccccc
Q 044927          289 MGLK---DLRTKLSIIPQEP--TLFR-GSVRTNLDP----L-GMYSDN----EIWEAMEKCQLK-ATISRLPMLLDSSVS  352 (467)
Q Consensus       289 ~~~~---~~r~~i~~v~Q~~--~lf~-~tv~enl~~----~-~~~~~~----~~~~~~~~~~l~-~~i~~l~~g~~t~v~  352 (467)
                      ++..   .+|++++||+|+|  .+++ .|+.+|+..    . ...+.+    .+.++++.+++. +..++          
T Consensus        88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~----------  157 (331)
T PRK15079         88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR----------  157 (331)
T ss_pred             CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence            8654   3578899999998  4664 699999852    1 112322    334556666662 23333          


Q ss_pred             CCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEe
Q 044927          353 DEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLS  429 (467)
Q Consensus       353 ~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~  429 (467)
                       ...+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||||++|+
T Consensus       158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~  236 (331)
T PRK15079        158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY  236 (331)
T ss_pred             -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence             3478999999999999999999999999999999999999999999988643  7999999999999875 99999999


Q ss_pred             CCEEEEecChhhHhcc
Q 044927          430 YGELVEYDLPSKLMET  445 (467)
Q Consensus       430 ~G~iv~~g~~~~l~~~  445 (467)
                      +|+|++.|+++++++.
T Consensus       237 ~G~ive~g~~~~i~~~  252 (331)
T PRK15079        237 LGHAVELGTYDEVYHN  252 (331)
T ss_pred             CCEEEEEcCHHHHHcC
Confidence            9999999999999864

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=6.2e-47  Score=364.52  Aligned_cols=212  Identities=23%  Similarity=0.367  Sum_probs=180.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHhccc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL  298 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~i  298 (467)
                      ++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+  ...+++++
T Consensus         2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   79 (240)
T PRK09493          2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA   79 (240)
T ss_pred             EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence            689999999963  35999999999999999999999999999999999999999999999999987643  34667889


Q ss_pred             EEEcCCCcccc-ccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~~lf~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +|+||++.+|. .|++||+.+..    ....    +++.++++..++.+..++           ....||||||||++||
T Consensus        80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la  148 (240)
T PRK09493         80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA  148 (240)
T ss_pred             EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence            99999998886 59999996421    1111    233445555555444433           3478999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||++++|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence            99999999999999999999999999999998864 47999999999999865 999999999999999999998753

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=2.6e-47  Score=373.04  Aligned_cols=211  Identities=27%  Similarity=0.391  Sum_probs=182.1

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcc
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTK  297 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~----r~~  297 (467)
                      .++|+++.|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+    +++
T Consensus        26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~  103 (269)
T cd03294          26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK  103 (269)
T ss_pred             hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence            56789999964  358999999999999999999999999999999999999999999999999887665443    467


Q ss_pred             cEEEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ++|+||++.+|. .|++||+.+..   ...    .+++.++++.+++.+.+++.|           .+||||||||++||
T Consensus       104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA  172 (269)
T cd03294         104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA  172 (269)
T ss_pred             EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence            999999999885 59999996421   111    234566777788877666655           57999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |||+++|++|||||||++||+.+++.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999998863  37999999999998765 999999999999999999999753

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-47  Score=367.66  Aligned_cols=211  Identities=27%  Similarity=0.446  Sum_probs=184.2

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            789999999964  359999999999999999999999999999999999999999999999999887777778888999


Q ss_pred             EcCCCccccc-cHHHhcCcCC-C-------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG-M-------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~-~-------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      +||++.++.+ |+.||+.+.. .       ..   ++++.++++..++.+..++.           ...|||||+||++|
T Consensus        81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l  149 (255)
T PRK11231         81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAFL  149 (255)
T ss_pred             ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHHH
Confidence            9999988876 9999996421 0       01   23455666767776554443           47899999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||++.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  227 (255)
T PRK11231        150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT  227 (255)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence            999999999999999999999999999999998864 47999999999998865 99999999999999999998864

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=3.8e-47  Score=359.33  Aligned_cols=202  Identities=25%  Similarity=0.406  Sum_probs=173.2

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  +++++|
T Consensus         1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~   76 (213)
T cd03301           1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM   76 (213)
T ss_pred             CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence            478999999964  3599999999999999999999999999999999999999999999999998765432  467999


Q ss_pred             EcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|. .|++||+.+..   ....    +++.++++..++.+..++.|           .+||||||||++||||+
T Consensus        77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral  145 (213)
T cd03301          77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI  145 (213)
T ss_pred             EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence            999999885 59999996421   1222    23455666677766555443           68999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      +.+|+++||||||++||+.+.+.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999999999999999999999999998864  37999999999998875 9999999999999875

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.6e-47  Score=373.09  Aligned_cols=215  Identities=30%  Similarity=0.471  Sum_probs=180.3

Q ss_pred             cEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 044927          220 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~  292 (467)
                      .++++|++++|++..   +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    +..
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            378999999996421   3599999999999999999999999999999999999999999999999998643    245


Q ss_pred             HHhcccEEEcCCC--ccccccHHHhcCcCC---CCCHH----HHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhH
Q 044927          293 DLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       293 ~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      ..++.++|+||+|  .+|..|+.||+.+..   ....+    .+.++++.+++. ++.           .....+|||||
T Consensus        82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq  150 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ  150 (287)
T ss_pred             HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence            6678899999998  577789999996421   12222    234455555553 232           33457899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~  440 (467)
                      |||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus       151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~  230 (287)
T PRK13641        151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK  230 (287)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999864 48999999999998864 9999999999999999999


Q ss_pred             hHhcc
Q 044927          441 KLMET  445 (467)
Q Consensus       441 ~l~~~  445 (467)
                      ++.+.
T Consensus       231 ~~~~~  235 (287)
T PRK13641        231 EIFSD  235 (287)
T ss_pred             HHhcC
Confidence            87653

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-46  Score=368.21  Aligned_cols=218  Identities=23%  Similarity=0.443  Sum_probs=183.8

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~  291 (467)
                      ..++++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~   89 (269)
T PRK14259         12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP   89 (269)
T ss_pred             ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence            46999999999964  359999999999999999999999999999999999987     689999999998853  456


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCCC---CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      .++|+.++|+||++.+|..|++||+.+...   ..   ++++.++++.+++...       ++........+||||||||
T Consensus        90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~qr  162 (269)
T PRK14259         90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQR  162 (269)
T ss_pred             HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHHH
Confidence            677889999999999998899999975321   11   2234445555554321       2233445567899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeC-----------CEE
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSY-----------GEL  433 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~-----------G~i  433 (467)
                      ++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++           |++
T Consensus       163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~  242 (269)
T PRK14259        163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL  242 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence            99999999999999999999999999999999999987667999999999998865 999999996           679


Q ss_pred             EEecChhhHhcc
Q 044927          434 VEYDLPSKLMET  445 (467)
Q Consensus       434 v~~g~~~~l~~~  445 (467)
                      ++.|+++++...
T Consensus       243 ~~~~~~~~~~~~  254 (269)
T PRK14259        243 VEFNETKKIFNS  254 (269)
T ss_pred             EEeCCHHHHHhC
Confidence            999999999753

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.1e-46  Score=368.01  Aligned_cols=216  Identities=25%  Similarity=0.421  Sum_probs=179.8

Q ss_pred             cEEEEeEEEEeCCC-------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 044927          220 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~-------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~  292 (467)
                      .++++||+++|++.       .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            37899999999631       34699999999999999999999999999999999999999999999999999877654


Q ss_pred             H---HhcccEEEcCCCc--cc-cccHHHhcCcC----CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927          293 D---LRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW  358 (467)
Q Consensus       293 ~---~r~~i~~v~Q~~~--lf-~~tv~enl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L  358 (467)
                      +   +|+.++|+||++.  ++ ..|++||+.+.    ....    ++++.++++..++.+          .........|
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L  151 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL  151 (265)
T ss_pred             HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence            3   5778999999983  44 36999998421    1111    123444555554421          1233455789


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                      |||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  231 (265)
T TIGR02769       152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE  231 (265)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence            99999999999999999999999999999999999999999998643  7999999999999875 99999999999999


Q ss_pred             ecChhhHhcc
Q 044927          436 YDLPSKLMET  445 (467)
Q Consensus       436 ~g~~~~l~~~  445 (467)
                      .|+++++...
T Consensus       232 ~g~~~~~~~~  241 (265)
T TIGR02769       232 ECDVAQLLSF  241 (265)
T ss_pred             ECCHHHHcCC
Confidence            9999999863

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-47  Score=343.97  Aligned_cols=212  Identities=28%  Similarity=0.421  Sum_probs=185.0

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      +++.+++++|++. ..+++|+||+++.||++||.|||||||||++++|++++.|++|+|++||.|.... +...|++||+
T Consensus         2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV   79 (245)
T COG4555           2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV   79 (245)
T ss_pred             eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence            6889999999763 3389999999999999999999999999999999999999999999999998764 5667999999


Q ss_pred             EcCCCcccc-ccHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFR-GSVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ++-+..++. .|++|||.+++.   .+    +.++.+..+..++.+.+++           +..++|.||||||+|||||
T Consensus        80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-----------Rv~~~S~G~kqkV~iARAl  148 (245)
T COG4555          80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-----------RVGEFSTGMKQKVAIARAL  148 (245)
T ss_pred             ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-----------HHhhhchhhHHHHHHHHHH
Confidence            997777775 599999976532   22    2345556666666666554           3467999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +++|++++|||||||||..+.+.+++.+++.+. |+++|+.||.++.++. ||||+++++|+++..|+++++.+.
T Consensus       149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence            999999999999999999999999999998764 9999999999999995 999999999999999999998764

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=5.9e-47  Score=348.23  Aligned_cols=178  Identities=31%  Similarity=0.582  Sum_probs=164.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~   79 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV   79 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence            478999999975433599999999999999999999999999999999999999999999999988665 5667889999


Q ss_pred             EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      +||++.+|+.|++||+                                      ...||||||||++||||++++|++||
T Consensus        80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll  121 (178)
T cd03247          80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL  121 (178)
T ss_pred             EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999988999997                                      36799999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927          381 LDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g  437 (467)
                      |||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus       122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            999999999999999999999876789999999999999889999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=8.3e-47  Score=369.60  Aligned_cols=213  Identities=22%  Similarity=0.340  Sum_probs=181.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~  296 (467)
                      .|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .+++
T Consensus         7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (269)
T PRK11831          7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK   84 (269)
T ss_pred             eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence            5899999999963  3589999999999999999999999999999999999999999999999998766543   3577


Q ss_pred             ccEEEcCCCccccc-cHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          297 KLSIIPQEPTLFRG-SVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~-tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      +++|+||++.+|.. |+.||+.+.    ...+.    +++.+.++..++.+..++           ...+||||||||++
T Consensus        85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~  153 (269)
T PRK11831         85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA  153 (269)
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence            89999999999876 999999631    11122    233445566665544333           33789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+++|++|||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (269)
T PRK11831        154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA  233 (269)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999999999999999864  37899999999998875 99999999999999999999876


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       234 ~  234 (269)
T PRK11831        234 N  234 (269)
T ss_pred             C
Confidence            4

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-46  Score=368.41  Aligned_cols=218  Identities=24%  Similarity=0.395  Sum_probs=185.4

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CC
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MG  290 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~  290 (467)
                      .+.|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++..  .+
T Consensus        17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~   94 (267)
T PRK14235         17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD   94 (267)
T ss_pred             CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence            347999999999963  3599999999999999999999999999999999999975     89999999999864  34


Q ss_pred             HHHHhcccEEEcCCCccccccHHHhcCcCC---CC--C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927          291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG  361 (467)
Q Consensus       291 ~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~--~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG  361 (467)
                      ...+|+.++|+||++.+|+.|+.||+.+..   ..  +    .+++.++++.+++.+.+.       ...+....+||||
T Consensus        95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG  167 (267)
T PRK14235         95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG  167 (267)
T ss_pred             hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence            556788999999999999889999996421   11  1    233455666666644322       1233456789999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~  440 (467)
                      ||||++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus       168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~  247 (267)
T PRK14235        168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE  247 (267)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999987667899999999999865 9999999999999999999


Q ss_pred             hHhc
Q 044927          441 KLME  444 (467)
Q Consensus       441 ~l~~  444 (467)
                      ++..
T Consensus       248 ~~~~  251 (267)
T PRK14235        248 KMFT  251 (267)
T ss_pred             HHHh
Confidence            9875

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.5e-47  Score=366.18  Aligned_cols=212  Identities=24%  Similarity=0.410  Sum_probs=181.0

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----------
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----------  290 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----------  290 (467)
                      |+++||+++|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++          
T Consensus         1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   78 (252)
T TIGR03005         1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD   78 (252)
T ss_pred             CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence            478999999964  35999999999999999999999999999999999999999999999999987543          


Q ss_pred             ---HHHHhcccEEEcCCCcccc-ccHHHhcCcCC----CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927          291 ---LKDLRTKLSIIPQEPTLFR-GSVRTNLDPLG----MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW  358 (467)
Q Consensus       291 ---~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L  358 (467)
                         ...+|+.++|++|++.+|. .|+.||+.+..    ...    ++++.++++..++.+..++.           ..+|
T Consensus        79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L  147 (252)
T TIGR03005        79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL  147 (252)
T ss_pred             hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence               2356788999999999885 69999996421    111    22345556666665554443           4789


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEE
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVE  435 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~  435 (467)
                      |||||||++|||||+++|+++||||||++||+.++..+.+.|++..  .++|+|++||+++.+. .|||+++|++|++++
T Consensus       148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T TIGR03005       148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE  227 (252)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999998864  3789999999999986 499999999999999


Q ss_pred             ecChhhHhcc
Q 044927          436 YDLPSKLMET  445 (467)
Q Consensus       436 ~g~~~~l~~~  445 (467)
                      .|+++++.+.
T Consensus       228 ~g~~~~~~~~  237 (252)
T TIGR03005       228 QGKPDEIFRQ  237 (252)
T ss_pred             eCCHHHHhcC
Confidence            9999998753

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=4.1e-47  Score=359.41  Aligned_cols=200  Identities=22%  Similarity=0.384  Sum_probs=173.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~  297 (467)
                      ++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..   .+++.
T Consensus         2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            7899999999533 3599999999999999999999999999999999999999999999999999876543   46788


Q ss_pred             cEEEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ++|+||++.+|. .|++||+.+..   ...    +++++++++..++.+..++.|           .+||||||||++||
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la  149 (214)
T TIGR02673        81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA  149 (214)
T ss_pred             eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence            999999999886 59999986421   111    245566777777776655544           67999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      |||+.+|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||++++|++|+
T Consensus       150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999999999999999999864 48999999999999886 99999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-46  Score=365.10  Aligned_cols=217  Identities=27%  Similarity=0.388  Sum_probs=183.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCC--CCCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC--SMGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~--~~~~~  292 (467)
                      .++++||+++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.  +.+..
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   81 (253)
T PRK14267          4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI   81 (253)
T ss_pred             eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence            4899999999964  3599999999999999999999999999999999999987     4999999999986  44555


Q ss_pred             HHhcccEEEcCCCccccc-cHHHhcCcCC---CC--CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          293 DLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MY--SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~--~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      .+|++++|+||++.+|+. |+.||+.+..   ..  ..    +++.++++..++.+.+.       ........+|||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~  154 (253)
T PRK14267         82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQ  154 (253)
T ss_pred             HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHHH
Confidence            678899999999999875 9999996421   11  11    23445555555533221       12344567899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~  441 (467)
                      |||++|||||+++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus       155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  234 (253)
T PRK14267        155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK  234 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999987667999999999998765 99999999999999999999


Q ss_pred             Hhcc
Q 044927          442 LMET  445 (467)
Q Consensus       442 l~~~  445 (467)
                      +...
T Consensus       235 ~~~~  238 (253)
T PRK14267        235 VFEN  238 (253)
T ss_pred             HHhC
Confidence            8753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-46  Score=364.37  Aligned_cols=217  Identities=29%  Similarity=0.420  Sum_probs=184.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHHHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLKDL  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~~~~~  294 (467)
                      .++++||+++|++  .++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+...+
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   80 (250)
T PRK14247          3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL   80 (250)
T ss_pred             eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence            4899999999964  3599999999999999999999999999999999999984     69999999999988777788


Q ss_pred             hcccEEEcCCCccc-cccHHHhcCcCC---C--CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          295 RTKLSIIPQEPTLF-RGSVRTNLDPLG---M--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       295 r~~i~~v~Q~~~lf-~~tv~enl~~~~---~--~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      |+.++|+||++.+| ..|+.||+.+..   .  ..    .+++.++++.+++.+.+.       ........+|||||||
T Consensus        81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q  153 (250)
T PRK14247         81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ  153 (250)
T ss_pred             hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence            89999999999765 569999996421   1  11    134455666666543221       1223445789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus       154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence            99999999999999999999999999999999999998766899999999999886 59999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       234 ~~  235 (250)
T PRK14247        234 TN  235 (250)
T ss_pred             cC
Confidence            54

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-46  Score=364.87  Aligned_cols=212  Identities=27%  Similarity=0.396  Sum_probs=183.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|+++.|++  +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (258)
T PRK13548          2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA   79 (258)
T ss_pred             eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence            3789999999964  35999999999999999999999999999999999999999999999999998877777788999


Q ss_pred             EEcCCCcc-ccccHHHhcCcCCC---C----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTL-FRGSVRTNLDPLGM---Y----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~l-f~~tv~enl~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      |+||++.+ +..|++||+.+...   .    .++++.++++..++.+..++.           ..+||||||||++||||
T Consensus        80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~a  148 (258)
T PRK13548         80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARV  148 (258)
T ss_pred             EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence            99999987 56799999964211   1    123455666777766544443           47899999999999999


Q ss_pred             hc------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927          372 LL------KRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       372 l~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |+      .+|++|||||||++||+.+...+.+.|+++.  .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (258)
T PRK13548        149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV  228 (258)
T ss_pred             HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence            99      5999999999999999999999999998864  4799999999999887 5999999999999999999988


Q ss_pred             hc
Q 044927          443 ME  444 (467)
Q Consensus       443 ~~  444 (467)
                      ..
T Consensus       229 ~~  230 (258)
T PRK13548        229 LT  230 (258)
T ss_pred             hC
Confidence            75

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-47  Score=384.40  Aligned_cols=212  Identities=23%  Similarity=0.390  Sum_probs=184.8

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.+.++  .++.+
T Consensus        18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i   93 (377)
T PRK11607         18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI   93 (377)
T ss_pred             ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence            35999999999964  358999999999999999999999999999999999999999999999999987654  46789


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |||||++.+|+. |+.||+.+..   ..+.    +++.++++..++.++.++.|           .+||||||||++|||
T Consensus        94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR  162 (377)
T PRK11607         94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR  162 (377)
T ss_pred             EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence            999999999975 9999997531   1222    34556677777776666555           689999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||+++|++|||||||++||+.++..+.+.|++..  .+.|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus       163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~  240 (377)
T PRK11607        163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH  240 (377)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999998887753  37999999999998764 999999999999999999999864

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-47  Score=371.83  Aligned_cols=215  Identities=27%  Similarity=0.404  Sum_probs=180.0

Q ss_pred             EEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHH
Q 044927          221 IELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKD  293 (467)
Q Consensus       221 i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~~  293 (467)
                      ++++||+++|++..   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    +...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            78999999996422   3599999999999999999999999999999999999999999999999998754    3456


Q ss_pred             HhcccEEEcCCC--ccccccHHHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          294 LRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       294 ~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      +|+.|+|+||++  .+|+.|++||+.+..   ..+.++    +.++++..++.+          ........+|||||||
T Consensus        83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q  152 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR  152 (280)
T ss_pred             HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence            788899999997  578889999996421   122222    233444444431          1223445789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (280)
T PRK13649        153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI  232 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999998864 47999999999998865 999999999999999999988


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      .+.
T Consensus       233 ~~~  235 (280)
T PRK13649        233 FQD  235 (280)
T ss_pred             hcC
Confidence            653

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.1e-47  Score=347.08  Aligned_cols=221  Identities=25%  Similarity=0.420  Sum_probs=188.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i  298 (467)
                      .++++||+..|++  ..+|+++||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|.|+...++++. |..|
T Consensus         3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            4899999999975  359999999999999999999999999999999999999999999999999999988764 7779


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      +||||.-.+|+. ||+||+.........   +......+++..+-+| -+..+...++.+|||||+|.++|||||+.+|+
T Consensus        81 ~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk  156 (237)
T COG0410          81 AYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPK  156 (237)
T ss_pred             EeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence            999999999975 999999753221111   0001111334444555 45566677889999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927          378 ILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      +|+|||||.||-|.-.+.|.+.|+++.+  +.||++|.++...+. .+||.+||++|+|+.+|+.+||.+..
T Consensus       157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~  228 (237)
T COG0410         157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP  228 (237)
T ss_pred             EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence            9999999999999999999999999763  679999999999866 59999999999999999999998653

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-46  Score=363.09  Aligned_cols=212  Identities=26%  Similarity=0.372  Sum_probs=179.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC------CCHHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS------MGLKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~------~~~~~  293 (467)
                      .++++|+++.|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..      .....
T Consensus         2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (242)
T PRK11124          2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE   79 (242)
T ss_pred             EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence            3789999999964  359999999999999999999999999999999999999999999999998731      22356


Q ss_pred             HhcccEEEcCCCccccc-cHHHhcCcC--C--CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          294 LRTKLSIIPQEPTLFRG-SVRTNLDPL--G--MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~--~--~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      +|++++|+||++.+|.. |+.||+...  .  ....    +++.+.++..++.++.++.           ..+|||||||
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~q  148 (242)
T PRK11124         80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQ  148 (242)
T ss_pred             HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHH
Confidence            67899999999999875 999999521  1  1121    2334455555555444443           4789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |++||||++.+|+++||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            9999999999999999999999999999999999999864 48999999999999865 999999999999999999887


Q ss_pred             hc
Q 044927          443 ME  444 (467)
Q Consensus       443 ~~  444 (467)
                      .+
T Consensus       229 ~~  230 (242)
T PRK11124        229 TQ  230 (242)
T ss_pred             cC
Confidence            54

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=2.4e-46  Score=362.52  Aligned_cols=213  Identities=26%  Similarity=0.380  Sum_probs=179.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--------H
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--------L  291 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~--------~  291 (467)
                      .++++||+++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+        .
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (250)
T PRK11264          3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI   80 (250)
T ss_pred             cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence            3899999999964  35999999999999999999999999999999999999999999999999986532        2


Q ss_pred             HHHhcccEEEcCCCcccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          292 KDLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      ..+|+.++|+||++.+|+ .|++||+.+.    .....    +.+.++++..++.+           .......+|||||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~Gq  149 (250)
T PRK11264         81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYPRRLSGGQ  149 (250)
T ss_pred             HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCChhhCChHH
Confidence            456788999999998886 5999999642    11121    12333444444433           3344558899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~  440 (467)
                      |||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus       150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~  229 (250)
T PRK11264        150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK  229 (250)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999998864 48999999999999875 9999999999999999999


Q ss_pred             hHhcc
Q 044927          441 KLMET  445 (467)
Q Consensus       441 ~l~~~  445 (467)
                      ++.+.
T Consensus       230 ~~~~~  234 (250)
T PRK11264        230 ALFAD  234 (250)
T ss_pred             HHhcC
Confidence            98753

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-46  Score=369.17  Aligned_cols=212  Identities=28%  Similarity=0.426  Sum_probs=179.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhccc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTKL  298 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~i  298 (467)
                      ++++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  ..+...+|+++
T Consensus         2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence            789999999964  35999999999999999999999999999999999999999999999999985  23345678889


Q ss_pred             EEEcCCCc--cccccHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEPT--LFRGSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~~--lf~~tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +|+||++.  ++..|+.+|+.+.   .....    +++.++++..++.++.++           ...+||||||||++||
T Consensus        80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la  148 (271)
T PRK13638         80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA  148 (271)
T ss_pred             EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence            99999985  5667899998642   11222    234456666666554433           3478999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |||+.+|++|||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (271)
T PRK13638        149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC  226 (271)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999998864 47899999999999865 999999999999999999988654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=6.5e-47  Score=357.95  Aligned_cols=201  Identities=25%  Similarity=0.387  Sum_probs=172.8

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~  297 (467)
                      ++++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+|+.
T Consensus         1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence            4689999999643 359999999999999999999999999999999999999999999999999877654   346788


Q ss_pred             cEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ++|+||++.+|.. |++||+.+..   ...    ++++.++++..++.+..++.|           .+||||||||++||
T Consensus        80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la  148 (214)
T cd03292          80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA  148 (214)
T ss_pred             eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence            9999999998874 9999996421   112    234556677777766555444           68999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      |||+.+|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus       149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999863 58999999999999875 999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-46  Score=368.02  Aligned_cols=213  Identities=23%  Similarity=0.369  Sum_probs=185.4

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..|+++||+++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            36999999999964  3599999999999999999999999999999999999999999999999999887777788899


Q ss_pred             EEEcCCCcccc-ccHHHhcCcCC--C------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          299 SIIPQEPTLFR-GSVRTNLDPLG--M------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       299 ~~v~Q~~~lf~-~tv~enl~~~~--~------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      +|+||++.+|. .|++||+.+..  .      ..   ++++.++++..++.++.++           ...+||||||||+
T Consensus        84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv  152 (265)
T PRK10253         84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA  152 (265)
T ss_pred             EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence            99999998875 59999996421  1      11   2245566777777655444           3478999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +||||++.+|+++||||||++||+.+...+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999999999999999999999999999998864  37899999999998765 9999999999999999999886


Q ss_pred             c
Q 044927          444 E  444 (467)
Q Consensus       444 ~  444 (467)
                      .
T Consensus       233 ~  233 (265)
T PRK10253        233 T  233 (265)
T ss_pred             h
Confidence            4

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.5e-46  Score=358.97  Aligned_cols=206  Identities=25%  Similarity=0.337  Sum_probs=177.1

Q ss_pred             cEEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 044927          220 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~  294 (467)
                      .++++|++++|++..  .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...   .
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   85 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL   85 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence            589999999996432  24899999999999999999999999999999999999999999999999998776543   2


Q ss_pred             -hcccEEEcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          295 -RTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       295 -r~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                       ++.++|+||++.+|.. |+.||+.+.   ....    .+++.++++..++.+..++.|           ..||||||||
T Consensus        86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr  154 (228)
T PRK10584         86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR  154 (228)
T ss_pred             HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence             3579999999998875 999998631   1111    234566777777776665554           6799999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhhcCEEEEEeCCEEEEe
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITDSDMFMVLSYGELVEY  436 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~  436 (467)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+..||++++|++|++++.
T Consensus       155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999999999999999999998863 3 7899999999999888999999999999764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-46  Score=360.45  Aligned_cols=212  Identities=25%  Similarity=0.372  Sum_probs=178.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i  298 (467)
                      .++++|++++|++  +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   82 (237)
T PRK11614          5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV   82 (237)
T ss_pred             EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence            4899999999963  35999999999999999999999999999999999999999999999999998776554 57789


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCC-CCHHH----HHHHHHHc-ChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGM-YSDNE----IWEAMEKC-QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~-~~~~~----~~~~~~~~-~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      +|++|++.+|+. |+.+|+.+... ....+    +.++++.. ++.+           ........||||||||++||||
T Consensus        83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a  151 (237)
T PRK11614         83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA  151 (237)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence            999999999875 99999964211 12122    22222222 1221           1223457899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .|||+++|++|++++.|+++++..
T Consensus       152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            999999999999999999999999999998864 4899999999999765 599999999999999999999874

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-46  Score=372.11  Aligned_cols=216  Identities=24%  Similarity=0.347  Sum_probs=178.4

Q ss_pred             ccEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----C-C
Q 044927          219 GRIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----M-G  290 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~----~-~  290 (467)
                      +.|+++|++++|++..   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..    . +
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            4699999999996432   248999999999999999999999999999999999999999999999998752    1 3


Q ss_pred             HHHHhcccEEEcCCC--ccccccHHHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927          291 LKDLRTKLSIIPQEP--TLFRGSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG  361 (467)
Q Consensus       291 ~~~~r~~i~~v~Q~~--~lf~~tv~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG  361 (467)
                      ...+|+.++|+||++  .+|..|++||+.+..   ....++    +.+.++..++.       .   ........+||||
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~-------~---~~~~~~~~~LS~G  154 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP-------E---DYVKRSPFELSGG  154 (289)
T ss_pred             HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC-------h---hHhcCChhhCCHH
Confidence            456788999999998  467789999996421   122222    22334443331       1   1223455789999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~  438 (467)
                      ||||++|||||+.+|++|||||||++||+.+++.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus       155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~  234 (289)
T PRK13645        155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS  234 (289)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            9999999999999999999999999999999999999998864  37999999999998764 99999999999999999


Q ss_pred             hhhHhc
Q 044927          439 PSKLME  444 (467)
Q Consensus       439 ~~~l~~  444 (467)
                      ++++..
T Consensus       235 ~~~~~~  240 (289)
T PRK13645        235 PFEIFS  240 (289)
T ss_pred             HHHHhc
Confidence            988764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-46  Score=361.19  Aligned_cols=216  Identities=25%  Similarity=0.408  Sum_probs=179.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i  298 (467)
                      .++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (241)
T PRK10895          3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI   80 (241)
T ss_pred             eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence            4889999999963  35999999999999999999999999999999999999999999999999998776544 56789


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCC----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      +|+||++.+|.. |+.||+.+...    .+.++...     .+.+.++.+  |++.........||||||||++||||++
T Consensus        81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~  153 (241)
T PRK10895         81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA  153 (241)
T ss_pred             EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence            999999998875 99999964321    11111111     112233332  2333344556789999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      .+|++|||||||++||+.++..+.+.+++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            9999999999999999999999999998754 48999999999987764 99999999999999999999875

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=365.27  Aligned_cols=217  Identities=22%  Similarity=0.375  Sum_probs=182.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCC--CCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICS--MGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~--p---~~G~i~i~g~~i~~--~~~~  292 (467)
                      .++++|+++.|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++..  .+..
T Consensus        12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~   89 (259)
T PRK14274         12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV   89 (259)
T ss_pred             eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence            5899999999964  359999999999999999999999999999999999997  3   58999999999863  3445


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCCC----CCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~----~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+|+.++|+||++.+|+.|++||+.+...    ..++    ++.++++..++.+.+.       ........+|||||||
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~q  162 (259)
T PRK14274         90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQ  162 (259)
T ss_pred             HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHH
Confidence            67889999999999998899999964211    1222    2334455555543321       2234456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  242 (259)
T PRK14274        163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF  242 (259)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999999999999999999999999997668999999999998865 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       243 ~~  244 (259)
T PRK14274        243 SN  244 (259)
T ss_pred             hC
Confidence            53

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=1.8e-46  Score=358.92  Aligned_cols=210  Identities=28%  Similarity=0.434  Sum_probs=176.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-HhcccE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLS  299 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i~  299 (467)
                      ++++||++.|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++++
T Consensus         1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (230)
T TIGR03410         1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA   78 (230)
T ss_pred             CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence            478999999964  35999999999999999999999999999999999999999999999999998776554 467899


Q ss_pred             EEcCCCccccc-cHHHhcCcCC-CC--CH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG-MY--SD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~-~~--~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      |+||++.+|.. |+.+|+.+.. ..  .. +...++++..+          ++.........+||||||||++|||||++
T Consensus        79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~  148 (230)
T TIGR03410        79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT  148 (230)
T ss_pred             EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            99999999876 9999996421 11  11 11223333322          12222334557899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      +|+++||||||++||+.++..+.+.|.+..+  ++|+|++||+++.+.. ||+++++++|++++.|+++++
T Consensus       149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            9999999999999999999999999998643  7999999999999885 999999999999999999987

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-46  Score=374.53  Aligned_cols=215  Identities=26%  Similarity=0.385  Sum_probs=182.0

Q ss_pred             cEEEEeEEEEeCCC--------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH
Q 044927          220 RIELEDLKVRYRPN--------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL  291 (467)
Q Consensus       220 ~i~~~~vs~~y~~~--------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~  291 (467)
                      .|+++|+++.|+..        ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            48999999999631        2358999999999999999999999999999999999999999999999999988765


Q ss_pred             H---HHhcccEEEcCCCc--ccc-ccHHHhcCc----CCCCC----HHHHHHHHHHcChHH-HHHhCCCcccccccCCCC
Q 044927          292 K---DLRTKLSIIPQEPT--LFR-GSVRTNLDP----LGMYS----DNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGE  356 (467)
Q Consensus       292 ~---~~r~~i~~v~Q~~~--lf~-~tv~enl~~----~~~~~----~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~  356 (467)
                      +   .+|++|+||||+|.  +++ .|+.+|+..    .....    .+++.++++.+++.+ ..++           ...
T Consensus        85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~p~  153 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR-----------YPH  153 (327)
T ss_pred             HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC-----------CCc
Confidence            3   46788999999984  554 488888741    11112    234566677777742 3333           337


Q ss_pred             CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      +||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.  .+.|+|+|||+++.+.. ||||++|++|+|
T Consensus       154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i  233 (327)
T PRK11308        154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC  233 (327)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            899999999999999999999999999999999999999999998864  38999999999999975 999999999999


Q ss_pred             EEecChhhHhcc
Q 044927          434 VEYDLPSKLMET  445 (467)
Q Consensus       434 v~~g~~~~l~~~  445 (467)
                      ++.|+++++++.
T Consensus       234 ve~g~~~~~~~~  245 (327)
T PRK11308        234 VEKGTKEQIFNN  245 (327)
T ss_pred             EEECCHHHHhcC
Confidence            999999999864

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-46  Score=369.29  Aligned_cols=213  Identities=26%  Similarity=0.419  Sum_probs=181.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhccc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL  298 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~i  298 (467)
                      ++++||+++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..  .+...+++.|
T Consensus         2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence            7899999999633 359999999999999999999999999999999999999999999999999852  2344678899


Q ss_pred             EEEcCCC--ccccccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEP--TLFRGSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~--~lf~~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +|+||++  .+|..|+.||+.+..   ....    +++.++++.+++.++.++.           ..+|||||+||++||
T Consensus        81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~la  149 (275)
T PRK13639         81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAIA  149 (275)
T ss_pred             EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence            9999997  467889999996421   1222    3345566666665444333           368999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||++.+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus       150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  227 (275)
T PRK13639        150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD  227 (275)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999999864 4899999999999987 4999999999999999999998753

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-46  Score=363.15  Aligned_cols=203  Identities=26%  Similarity=0.340  Sum_probs=176.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++.++
T Consensus        12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~   84 (257)
T PRK11247         12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR   84 (257)
T ss_pred             cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence            5999999999964  35999999999999999999999999999999999999999999999998753     4577899


Q ss_pred             EEcCCCcccc-ccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      |++|++.+|+ .|++||+.+.. ...++++.++++..++.+..++.           ..+||||||||++|||||+++|+
T Consensus        85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqkqrl~laraL~~~p~  153 (257)
T PRK11247         85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGGQKQRVALARALIHRPG  153 (257)
T ss_pred             EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence            9999999887 59999997431 11244566777777776554443           47899999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927          378 ILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~  440 (467)
                      +|||||||++||+.+...+.+.|++..  .++|+|++||+++.+.. ||+|++|++|+++++|+.+
T Consensus       154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            999999999999999999999998853  37999999999998765 9999999999999988765

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=365.11  Aligned_cols=216  Identities=24%  Similarity=0.400  Sum_probs=181.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCC--HH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG--LK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~--~~  292 (467)
                      .++++|++++|++  +++|+|+||+|++||++||+||||||||||+++|+|+++|     ++|+|.++|.++...+  ..
T Consensus        12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   89 (258)
T PRK14268         12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV   89 (258)
T ss_pred             eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence            6999999999963  3599999999999999999999999999999999999985     7999999999886432  34


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      .+|+.++|+||++.+|+.|++||+.+..   ..+.+    ++.++++.+++.+.+       ..........||||||||
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr  162 (258)
T PRK14268         90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR  162 (258)
T ss_pred             HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence            5678899999999998899999996421   12222    244455555553211       122334557899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++..
T Consensus       163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  242 (258)
T PRK14268        163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH  242 (258)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999999987668999999999998865 99999999999999999999875

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=7.9e-47  Score=357.26  Aligned_cols=197  Identities=29%  Similarity=0.426  Sum_probs=167.8

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII  301 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v  301 (467)
                      +++||+++|++  .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++.++|+
T Consensus         1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v   73 (213)
T cd03235           1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV   73 (213)
T ss_pred             CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence            36899999964  35899999999999999999999999999999999999999999999998763     467789999


Q ss_pred             cCCCcc---ccccHHHhcCcCCC--------C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          302 PQEPTL---FRGSVRTNLDPLGM--------Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       302 ~Q~~~l---f~~tv~enl~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ||++.+   |+.|++||+.+...        .   ..+++.++++..++.++.++.           ..+||||||||++
T Consensus        74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~  142 (213)
T cd03235          74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL  142 (213)
T ss_pred             ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence            999876   55799999864211        0   123456677777776655543           3689999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      |||||+.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++| +++.|
T Consensus       143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            9999999999999999999999999999999999864 57999999999999875 9999999886 66654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=2e-46  Score=364.61  Aligned_cols=215  Identities=26%  Similarity=0.399  Sum_probs=182.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC---------
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM---------  289 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~---------  289 (467)
                      +.++++||+++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (257)
T PRK10619          4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV   81 (257)
T ss_pred             ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence            46999999999964  3599999999999999999999999999999999999999999999999988542         


Q ss_pred             ----CHHHHhcccEEEcCCCccccc-cHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCC
Q 044927          290 ----GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGE  356 (467)
Q Consensus       290 ----~~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~  356 (467)
                          ....+++.++|+||++.+|+. |++||+.+..    ....    +++.++++..++.+...          .....
T Consensus        82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~  151 (257)
T PRK10619         82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYPV  151 (257)
T ss_pred             ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCcc
Confidence                134567889999999999875 9999996321    1121    23445556655544321          23457


Q ss_pred             CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927          357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELV  434 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv  434 (467)
                      .||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||||++|++|+++
T Consensus       152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~  231 (257)
T PRK10619        152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE  231 (257)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            899999999999999999999999999999999999999999999864 48999999999999886 9999999999999


Q ss_pred             EecChhhHhcc
Q 044927          435 EYDLPSKLMET  445 (467)
Q Consensus       435 ~~g~~~~l~~~  445 (467)
                      +.|+++++.+.
T Consensus       232 ~~~~~~~~~~~  242 (257)
T PRK10619        232 EEGAPEQLFGN  242 (257)
T ss_pred             EeCCHHHhhhC
Confidence            99999998753

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.3e-48  Score=345.74  Aligned_cols=214  Identities=26%  Similarity=0.429  Sum_probs=182.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i  298 (467)
                      .+..+|+.++|+.  +++++++||++++||++|+.|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..|
T Consensus         4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi   81 (243)
T COG1137           4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI   81 (243)
T ss_pred             EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence            5889999999953  459999999999999999999999999999999999999999999999999999997653 5679


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCCCCH---------HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGMYSD---------NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~~~~---------~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      ||+||+|.+|.+ ||+|||...-...+         +++.+.++..++.+.           -...+.+||||||+|+.|
T Consensus        82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-----------r~~~a~sLSGGERRR~EI  150 (243)
T COG1137          82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-----------RDSKAYSLSGGERRRVEI  150 (243)
T ss_pred             ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-----------hcCcccccccchHHHHHH
Confidence            999999999987 99999953211111         122334444444433           334578999999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChh-HHhhcCEEEEEeCCEEEEecChhhHhccC
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVP-TITDSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      ||||+.+|+.++||||++|+||.+...|++.++.+. +|--|++.-|+.. ++..|||.+++.+|+|.++|+|+|+.+.+
T Consensus       151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~  230 (243)
T COG1137         151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE  230 (243)
T ss_pred             HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence            999999999999999999999999999999998865 4889999999986 56679999999999999999999998653

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=2.9e-46  Score=354.64  Aligned_cols=210  Identities=20%  Similarity=0.353  Sum_probs=185.0

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhcc
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTK  297 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~  297 (467)
                      .+.|+.|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.    ...|+.
T Consensus         2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence            578999999755 459999999999999999999999999999999999999999999999998865542    235678


Q ss_pred             cEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      ++|++|++.+|+.|++||+.+.....+++..++++.+++.+.+..+|.|+++.++.....||||||||++||||++.+|+
T Consensus        81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  160 (218)
T cd03290          81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN  160 (218)
T ss_pred             EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            99999999999889999997543344556677888889988889999999999998899999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHH--HHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          378 ILVLDEATASIDSATDAILQR--IIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      ++||||||++||+.+...+.+  .++... .+.|+|++||+++.+..||++++|++|.
T Consensus       161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            999999999999999988887  455443 3789999999999988899999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-46  Score=361.60  Aligned_cols=217  Identities=25%  Similarity=0.426  Sum_probs=182.5

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~  291 (467)
                      +.++++||++.|++  +++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+.
T Consensus         2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14240          2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV   79 (250)
T ss_pred             CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence            35899999999964  3599999999999999999999999999999999999863     69999999999864  345


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCC---CC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      ..+|+.++|+||++.+|+.|+++|+.+..   .. +    ++++.++++.+++.+.+.       ........+||||||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~  152 (250)
T PRK14240         80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ  152 (250)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence            56788999999999998899999996421   11 1    223444555555433221       223445678999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ||++|||||+.+|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (250)
T PRK14240        153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL  232 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999987668999999999998765 999999999999999999998


Q ss_pred             hc
Q 044927          443 ME  444 (467)
Q Consensus       443 ~~  444 (467)
                      ..
T Consensus       233 ~~  234 (250)
T PRK14240        233 FT  234 (250)
T ss_pred             Hh
Confidence            75

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=2.6e-46  Score=353.24  Aligned_cols=200  Identities=28%  Similarity=0.425  Sum_probs=173.4

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|++++|++.  .  .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++|
T Consensus         1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~   74 (211)
T cd03298           1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM   74 (211)
T ss_pred             CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence            4789999999632  2  39999999999999999999999999999999999999999999999876654  3578999


Q ss_pred             EcCCCccccc-cHHHhcCcCCC-------CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ++|++.+|.+ |++||+.+...       ..++++.++++.+++.+..++.|           .+||||||||++||||+
T Consensus        75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al  143 (211)
T cd03298          75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL  143 (211)
T ss_pred             EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence            9999999875 99999964211       12345677788888877666655           57999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      +.+|+++||||||++||+.++..+.+.|++..  .++|+|++||+++.+.. |||+++|++|++++.|
T Consensus       144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            99999999999999999999999999999864  37999999999999875 9999999999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-46  Score=362.58  Aligned_cols=217  Identities=24%  Similarity=0.409  Sum_probs=181.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CC---CccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EP---ENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p---~~G~i~i~g~~i~~~--~~~  292 (467)
                      .++++||+++|++  +++|+|+||++++||+++|+||||||||||+++|+|++  +|   ++|+|.++|+++...  +..
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14239          5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV   82 (252)
T ss_pred             eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence            4899999999963  35999999999999999999999999999999999995  46   499999999998643  345


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcC----CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+|+.++|+||++.+|+.|++||+.+.    +...    ++++.++++.+++.+.+.       +..+....+|||||||
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q  155 (252)
T PRK14239         83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQQ  155 (252)
T ss_pred             hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHHH
Confidence            678889999999999999999999632    1111    123344555555533221       2234556789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T PRK14239        156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF  235 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999987667999999999998765 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       236 ~~  237 (252)
T PRK14239        236 MN  237 (252)
T ss_pred             hC
Confidence            54

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=363.53  Aligned_cols=217  Identities=25%  Similarity=0.418  Sum_probs=182.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC---CCC--CccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL---VEP--ENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl---~~p--~~G~i~i~g~~i~~~--~~~  292 (467)
                      .++++|+++.|++  +.+|+|+||++++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|.++...  +..
T Consensus         3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14245          3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD   80 (250)
T ss_pred             EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence            5899999999964  3589999999999999999999999999999999997   455  589999999998754  245


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCC---CC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+|+.++|+||++.+|..|+.||+.+..   .. .    ++++.++++.+++.+.+.       +.....+.+|||||||
T Consensus        81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q  153 (250)
T PRK14245         81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQQ  153 (250)
T ss_pred             HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHHH
Confidence            6788899999999999889999996421   11 1    123445555555533221       2234556789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~  233 (250)
T PRK14245        154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF  233 (250)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999999999999999999999999998678999999999998864 9999999999999999999997


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       234 ~~  235 (250)
T PRK14245        234 TN  235 (250)
T ss_pred             cC
Confidence            53

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-46  Score=364.57  Aligned_cols=218  Identities=24%  Similarity=0.425  Sum_probs=185.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~  291 (467)
                      ..|+++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   96 (267)
T PRK14237         19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV   96 (267)
T ss_pred             eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence            36999999999953  459999999999999999999999999999999999997     589999999999864  334


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      ..+|+.++|+||++.+|..|++||+.+..    ....    +++.++++..++.+.+       +...+....+||||||
T Consensus        97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~  169 (267)
T PRK14237         97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQ  169 (267)
T ss_pred             HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHH
Confidence            56788999999999999899999996421    1111    2344556666654332       2234456689999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus       170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  249 (267)
T PRK14237        170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI  249 (267)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999998866899999999999876 4999999999999999999998


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      .+.
T Consensus       250 ~~~  252 (267)
T PRK14237        250 FTN  252 (267)
T ss_pred             hcC
Confidence            753

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-46  Score=364.41  Aligned_cols=217  Identities=25%  Similarity=0.460  Sum_probs=181.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~  292 (467)
                      .++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...  +..
T Consensus        21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   98 (268)
T PRK14248         21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV   98 (268)
T ss_pred             eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence            5999999999963  359999999999999999999999999999999999864     7899999999998643  344


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcC----CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .++++++|+||++.+|+.|++||+.+.    ....    ++.+.++++..++.+.+       ....+....+|||||||
T Consensus        99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q  171 (268)
T PRK14248         99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQ  171 (268)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHH
Confidence            678889999999999988999999642    1111    12244455555542111       12234456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  251 (268)
T PRK14248        172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF  251 (268)
T ss_pred             HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999987667899999999998764 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       252 ~~  253 (268)
T PRK14248        252 TS  253 (268)
T ss_pred             hC
Confidence            53

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-46  Score=382.96  Aligned_cols=199  Identities=27%  Similarity=0.411  Sum_probs=174.1

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcccEEEcCCCccccc-
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG-  310 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-  310 (467)
                      .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+...+    +++++|+||++.+|+. 
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            37999999999999999999999999999999999999999999999999988776543    4579999999999864 


Q ss_pred             cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeC
Q 044927          311 SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE  383 (467)
Q Consensus       311 tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDE  383 (467)
                      |++||+.+..   ..+    .+++.++++.+++.++.++.|           .+||||||||++|||||+.+|++|||||
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE  190 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE  190 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            9999996421   122    234556777777776666655           6899999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          384 ATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       384 pts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||++||+.+++.+++.|+++.  .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~  255 (400)
T PRK10070        191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN  255 (400)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence            999999999999999998863  47999999999998765 999999999999999999998764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=3.8e-46  Score=356.03  Aligned_cols=207  Identities=25%  Similarity=0.434  Sum_probs=170.4

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHh
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KDLR  295 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r  295 (467)
                      ++++||+++|++..  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            68999999996431  258999999999999999999999999999999999999999999999999987663   4678


Q ss_pred             cccEEEcCCC--ccc-cccHHHhcCcC----CC-CCHHHH----HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          296 TKLSIIPQEP--TLF-RGSVRTNLDPL----GM-YSDNEI----WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       296 ~~i~~v~Q~~--~lf-~~tv~enl~~~----~~-~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      +.++|++|++  .++ ..|+++|+.+.    .. ..++..    .+.++..++.          +........+||||||
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~  151 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR  151 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence            8999999998  344 46999998531    11 111111    1233333331          1233445578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEec
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYD  437 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g  437 (467)
                      ||++|||||+.+|++|||||||++||+.+++.+.+.|++..+  ++|+|++||+++.+. .||++++|++|++++.|
T Consensus       152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            999999999999999999999999999999999999998643  799999999999988 59999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=3.2e-46  Score=355.33  Aligned_cols=203  Identities=26%  Similarity=0.391  Sum_probs=173.0

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~  297 (467)
                      ++++|++++|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...   +|+.
T Consensus         2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ   80 (222)
T ss_pred             EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence            7899999999433 35999999999999999999999999999999999999999999999999987765443   6788


Q ss_pred             cEEEcCCCccc-cccHHHhcCcC---CCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLF-RGSVRTNLDPL---GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf-~~tv~enl~~~---~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ++|+||++.+| ..|++||+.+.   ...+.+    ++.++++..++.+..++.           ..+||||||||++||
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la  149 (222)
T PRK10908         81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA  149 (222)
T ss_pred             eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence            99999999875 56999999642   112222    344566666666555443           378999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                      ||++.+|++|||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|+++.
T Consensus       150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999999999999999863 47899999999999876 89999999999864

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-46  Score=373.43  Aligned_cols=218  Identities=19%  Similarity=0.307  Sum_probs=179.4

Q ss_pred             cEEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCccEEEEcCEeCCCCCHHH
Q 044927          220 RIELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~----p~~G~i~i~g~~i~~~~~~~  293 (467)
                      .++++||++.|+...  ..+|+|+||+|++||++||+|+||||||||+++|+|+++    |++|+|.++|.++..++.++
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            389999999996532  358999999999999999999999999999999999998    48999999999998887665


Q ss_pred             Hh----cccEEEcCCCc--ccc-ccHHHhcC----cCCCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927          294 LR----TKLSIIPQEPT--LFR-GSVRTNLD----PLGMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW  358 (467)
Q Consensus       294 ~r----~~i~~v~Q~~~--lf~-~tv~enl~----~~~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L  358 (467)
                      ++    +.|+||||+|.  +++ .|+.+++.    ......    .+++.++++.+++.+..        ...+....+|
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L  154 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL  154 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence            44    36999999985  443 36665542    211112    23456677777764321        1123345789


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEE
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVE  435 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~  435 (467)
                      |||||||++|||||+.+|++||+||||++||+.++..+++.|+++.  .+.|+|+|||+++.+. .||||++|++|+|++
T Consensus       155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive  234 (326)
T PRK11022        155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE  234 (326)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999864  3799999999999986 599999999999999


Q ss_pred             ecChhhHhcc
Q 044927          436 YDLPSKLMET  445 (467)
Q Consensus       436 ~g~~~~l~~~  445 (467)
                      .|+++++++.
T Consensus       235 ~g~~~~~~~~  244 (326)
T PRK11022        235 TGKAHDIFRA  244 (326)
T ss_pred             ECCHHHHhhC
Confidence            9999999863

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-46  Score=362.60  Aligned_cols=212  Identities=23%  Similarity=0.353  Sum_probs=179.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i  298 (467)
                      .++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence            4899999999963  359999999999999999999999999999999999999999999999999987765554 4569


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCC-----------C-----CH------HHHHHHHHHcChHHHHHhCCCcccccccCCC
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGM-----------Y-----SD------NEIWEAMEKCQLKATISRLPMLLDSSVSDEG  355 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~-----------~-----~~------~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g  355 (467)
                      +|+||++.+|.. |++||+.+...           .     ..      +.+.+.++..+           ++.......
T Consensus        83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~  151 (255)
T PRK11300         83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG-----------LLEHANRQA  151 (255)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC-----------hhhhhhCCh
Confidence            999999999875 99999964210           0     00      11222333333           444445566


Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      .+||||||||++||||++.+|++|||||||++||+.++..+.+.|.+.. + ++|+|++||+++.+.. ||++++|++|+
T Consensus       152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~  231 (255)
T PRK11300        152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT  231 (255)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence            8899999999999999999999999999999999999999999998863 3 7899999999999865 99999999999


Q ss_pred             EEEecChhhHhc
Q 044927          433 LVEYDLPSKLME  444 (467)
Q Consensus       433 iv~~g~~~~l~~  444 (467)
                      +++.|+++++..
T Consensus       232 i~~~~~~~~~~~  243 (255)
T PRK11300        232 PLANGTPEEIRN  243 (255)
T ss_pred             EEecCCHHHHhh
Confidence            999999998864

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-46  Score=354.92  Aligned_cols=208  Identities=24%  Similarity=0.374  Sum_probs=181.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++||+++|++ .   ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++|
T Consensus         2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~   75 (232)
T PRK10771          2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM   75 (232)
T ss_pred             eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence            789999999963 2   249999999999999999999999999999999999999999999999876543  2567999


Q ss_pred             EcCCCccccc-cHHHhcCcCC--C--C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG--M--Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~--~--~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|.+ |+.||+.+..  .  .   .++++.++++..++.+.+++.|           ..||||||||++||||+
T Consensus        76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral  144 (232)
T PRK10771         76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL  144 (232)
T ss_pred             EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence            9999999875 9999996421  1  1   1345677888888887777666           57999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +++|+++||||||++||+.+++.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~  220 (232)
T PRK10771        145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG  220 (232)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999998863  37899999999999865 999999999999999999998754

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.1e-46  Score=363.08  Aligned_cols=211  Identities=23%  Similarity=0.367  Sum_probs=182.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|+++.|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (256)
T TIGR03873         2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL   79 (256)
T ss_pred             ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence            689999999964  359999999999999999999999999999999999999999999999999988887777888999


Q ss_pred             EcCCCcc-ccccHHHhcCcCCC--------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          301 IPQEPTL-FRGSVRTNLDPLGM--------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       301 v~Q~~~l-f~~tv~enl~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      +||++.+ +..|++||+.+...        ..   .+++.++++.+++.+..++           ....||||||||++|
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l  148 (256)
T TIGR03873        80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV  148 (256)
T ss_pred             ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence            9999865 45799999964210        01   1234556666666544333           347899999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||++.+|+++||||||++||+.+...+.+.|++.. ++.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence            999999999999999999999999999999999864 4789999999999986 599999999999999999998864

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=2.3e-46  Score=342.79  Aligned_cols=172  Identities=35%  Similarity=0.610  Sum_probs=161.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence            47899999997543458999999999999999999999999999999999999999999999999988888888899999


Q ss_pred             EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      ++|++.+|+.|++||+                                         ||||||||++||||++++|+++|
T Consensus        81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll  119 (173)
T cd03246          81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV  119 (173)
T ss_pred             ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999988999998                                         89999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927          381 LDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGEL  433 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i  433 (467)
                      |||||++||+.++..+.+.+++.. +++|+|++||+++.+..||++++|++|++
T Consensus       120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            999999999999999999998864 48899999999999888999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-46  Score=361.89  Aligned_cols=217  Identities=25%  Similarity=0.400  Sum_probs=181.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~  292 (467)
                      .++++|++|+|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+..
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~   81 (251)
T PRK14251          4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV   81 (251)
T ss_pred             eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence            4899999999964  359999999999999999999999999999999999997     479999999998854  3345


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCC---CC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+|+.++|++|++.+|+.|++||+.+..   .. ..    +++.++++..++....       .........+|||||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q  154 (251)
T PRK14251         82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ  154 (251)
T ss_pred             HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence            6788899999999999899999996421   11 11    2334455555542110       11223456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus       155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14251        155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF  234 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999987667999999999998765 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       235 ~~  236 (251)
T PRK14251        235 IA  236 (251)
T ss_pred             hC
Confidence            53

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=4.1e-46  Score=364.28  Aligned_cols=224  Identities=26%  Similarity=0.396  Sum_probs=184.6

Q ss_pred             cEEEEeEEEEeCCC-------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 044927          220 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~-------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~  292 (467)
                      .|+++||+++|+..       ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   83 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS   83 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence            48999999999521       23599999999999999999999999999999999999999999999999998755555


Q ss_pred             HHhcccEEEcCCCc--cccc-cHHHhcCcC----CCCC----HHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCCh
Q 044927          293 DLRTKLSIIPQEPT--LFRG-SVRTNLDPL----GMYS----DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSV  360 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~--lf~~-tv~enl~~~----~~~~----~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSg  360 (467)
                      ..++.++|+||++.  +++. |+.+|+.+.    ....    .+++.++++.+++. +.....           ..+|||
T Consensus        84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LS~  152 (267)
T PRK15112         84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-----------PHMLAP  152 (267)
T ss_pred             hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-----------chhcCH
Confidence            55678999999985  4443 888887421    1111    23456677777773 333332           367999


Q ss_pred             hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      |||||++|||||+++|++|||||||++||+.+.+.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~  232 (267)
T PRK15112        153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG  232 (267)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999999999864  37899999999999886 9999999999999999


Q ss_pred             ChhhHhccC--chHHHHHH
Q 044927          438 LPSKLMETN--SAFSKLVA  454 (467)
Q Consensus       438 ~~~~l~~~~--~~~~~l~~  454 (467)
                      +++++....  ..+++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~  251 (267)
T PRK15112        233 STADVLASPLHELTKRLIA  251 (267)
T ss_pred             CHHHHhcCCCCHHHHHHHH
Confidence            999987642  34455554

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.5e-46  Score=373.58  Aligned_cols=202  Identities=25%  Similarity=0.411  Sum_probs=173.5

Q ss_pred             EeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927          229 RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF  308 (467)
Q Consensus       229 ~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf  308 (467)
                      +|++  .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.+|
T Consensus         2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~   78 (302)
T TIGR01188         2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD   78 (302)
T ss_pred             eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence            5643  359999999999999999999999999999999999999999999999999865 3456788999999999988


Q ss_pred             cc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          309 RG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       309 ~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      .. |++||+.+..   ..+    ++++.++++.+++.+..++           ...+||||||||++|||||+++|++||
T Consensus        79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lll  147 (302)
T TIGR01188        79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVLF  147 (302)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            75 9999996421   112    2235556666666544333           347899999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          381 LDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||++||+.+++.+++.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~  213 (302)
T TIGR01188       148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR  213 (302)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence            999999999999999999999864 47999999999999875 99999999999999999999865

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-46  Score=360.43  Aligned_cols=217  Identities=25%  Similarity=0.419  Sum_probs=183.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~  292 (467)
                      .++++|++++|++  +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+     +|+|.++|.++...  +..
T Consensus         4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~   81 (251)
T PRK14249          4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV   81 (251)
T ss_pred             eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence            5899999999963  35999999999999999999999999999999999999997     69999999988643  345


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCCC---C-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+|+.++|+||++.+|+.|++||+.+...   . ..    +.+.++++..++.+.+       .......+.+|||||||
T Consensus        82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~q  154 (251)
T PRK14249         82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQ  154 (251)
T ss_pred             HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHH
Confidence            67889999999999998899999964311   1 11    2233344444543322       22345567899999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14249        155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF  234 (251)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence            999999999999999999999999999999999999987668999999999999876 8999999999999999999986


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       235 ~~  236 (251)
T PRK14249        235 SR  236 (251)
T ss_pred             hC
Confidence            53

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=2.4e-46  Score=356.95  Aligned_cols=209  Identities=23%  Similarity=0.332  Sum_probs=178.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||++.|++  .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   84 (225)
T PRK10247          7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS   84 (225)
T ss_pred             eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence            5999999999963  35999999999999999999999999999999999999999999999999998887777888999


Q ss_pred             EEcCCCccccccHHHhcCcC----CCC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          300 IIPQEPTLFRGSVRTNLDPL----GMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~----~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      |+||++.+|+.|++||+.+.    ... ..+++.+.++..++.+          +.......+|||||+||++|||||++
T Consensus        85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~~  154 (225)
T PRK10247         85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQF  154 (225)
T ss_pred             EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            99999999988999999642    111 1223344555555421          22344567899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEe-CCEEEEecChh
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLS-YGELVEYDLPS  440 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~-~G~iv~~g~~~  440 (467)
                      +|+++||||||++||+.+.+.+.+.|++..  .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus       155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence            999999999999999999999999999863  3789999999999998899999995 66677888875

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-46  Score=359.73  Aligned_cols=218  Identities=23%  Similarity=0.433  Sum_probs=183.0

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCCC--CH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~--p---~~G~i~i~g~~i~~~--~~  291 (467)
                      +.++++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++...  +.
T Consensus         3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~   80 (252)
T PRK14256          3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP   80 (252)
T ss_pred             cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence            46999999999963  359999999999999999999999999999999999986  4   689999999998643  34


Q ss_pred             HHHhcccEEEcCCCcccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          292 KDLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      ..+|+.++|+||++.+|. .|++||+.+.    ...+.    +++.++++.+++.+.+..       ..+....+|||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~  153 (252)
T PRK14256         81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGGQ  153 (252)
T ss_pred             HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHHH
Confidence            567889999999999887 5999999642    11121    234455566665433221       2234567899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~  441 (467)
                      |||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|++++
T Consensus       154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  233 (252)
T PRK14256        154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK  233 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999999999866789999999999986 499999999999999999999


Q ss_pred             Hhcc
Q 044927          442 LMET  445 (467)
Q Consensus       442 l~~~  445 (467)
                      +...
T Consensus       234 ~~~~  237 (252)
T PRK14256        234 IFTT  237 (252)
T ss_pred             HHhC
Confidence            8753

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=1.8e-46  Score=354.08  Aligned_cols=200  Identities=27%  Similarity=0.447  Sum_probs=169.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|+++.|++  +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..    ..++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~   74 (210)
T cd03269           1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY   74 (210)
T ss_pred             CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence            478999999963  359999999999999999999999999999999999999999999999987753    45778999


Q ss_pred             EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|.. |++||+.+..   ...    .+++.++++..++.+...           ....+||||||||++||||+
T Consensus        75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al  143 (210)
T cd03269          75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAV  143 (210)
T ss_pred             eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHH
Confidence            9999998875 9999986421   111    223445555555554433           34478999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      +.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            99999999999999999999999999998864 47899999999998865 9999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=2.1e-46  Score=354.22  Aligned_cols=200  Identities=29%  Similarity=0.456  Sum_probs=170.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhccc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKL  298 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~i  298 (467)
                      ++++||+++|++  .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .+...+++.+
T Consensus         1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   78 (213)
T cd03262           1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV   78 (213)
T ss_pred             CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence            478999999964  359999999999999999999999999999999999999999999999998853  3445678899


Q ss_pred             EEEcCCCcccc-ccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~~lf~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +|+||++.+|. .|++||+.+..    ....    +++.++++..++.+.+++.           ..+||||||||++||
T Consensus        79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la  147 (213)
T cd03262          79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA  147 (213)
T ss_pred             eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence            99999999886 59999996421    1222    2344555666665544443           378999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      ||++++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++
T Consensus       148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999864 47899999999999875 999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-46  Score=362.57  Aligned_cols=216  Identities=23%  Similarity=0.410  Sum_probs=181.5

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCCC--HHH
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSMG--LKD  293 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~  293 (467)
                      -+++||+++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...+  ...
T Consensus         6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   83 (251)
T PRK14244          6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL   83 (251)
T ss_pred             EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence            478999999963  358999999999999999999999999999999999986     47999999999886543  235


Q ss_pred             HhcccEEEcCCCccccccHHHhcCcCC---CC--C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          294 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~--~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      +|+.++|+||++.+|+.|+.||+.+..   ..  .    ++++.++++..++.+.+.       +.++..+.+|||||||
T Consensus        84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q  156 (251)
T PRK14244         84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ  156 (251)
T ss_pred             HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence            688999999999999889999996421   11  1    123445566666543211       2234456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (251)
T PRK14244        157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF  236 (251)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999999987668999999999999875 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       237 ~~  238 (251)
T PRK14244        237 KN  238 (251)
T ss_pred             cC
Confidence            54

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-46  Score=363.11  Aligned_cols=218  Identities=23%  Similarity=0.370  Sum_probs=184.7

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~  291 (467)
                      +.++++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+.
T Consensus        24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~  101 (272)
T PRK14236         24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV  101 (272)
T ss_pred             cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence            46999999999964  3599999999999999999999999999999999999984     89999999999864  344


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCC---CC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      ..+|+.++|+||++.+|+.|++||+.+..   .. .    ++++.++++.+++.+.+.       +..+..+.+||||||
T Consensus       102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~  174 (272)
T PRK14236        102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQ  174 (272)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHH
Confidence            56788999999999999889999996421   11 1    123455556655543322       233456689999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ||++|||||+++|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus       175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  254 (272)
T PRK14236        175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL  254 (272)
T ss_pred             HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence            9999999999999999999999999999999999999987667999999999998765 999999999999999999998


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      .+.
T Consensus       255 ~~~  257 (272)
T PRK14236        255 FTS  257 (272)
T ss_pred             hcC
Confidence            753

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=360.69  Aligned_cols=217  Identities=23%  Similarity=0.432  Sum_probs=183.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~  292 (467)
                      .|+++||+++|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+..
T Consensus        10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   87 (264)
T PRK14243         10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV   87 (264)
T ss_pred             EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence            5899999999964  358999999999999999999999999999999999986     479999999998853  3456


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCCC---CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      .++++++|++|++.+|+.|+.||+.+...   ..   ++++.++++.+++.+.+..       .......+||||||||+
T Consensus        88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv  160 (264)
T PRK14243         88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL  160 (264)
T ss_pred             HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence            67889999999999988899999964211   11   2234445666666543322       23445678999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe---------CCEEEEe
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS---------YGELVEY  436 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~---------~G~iv~~  436 (467)
                      +|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|+         +|++++.
T Consensus       161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~  240 (264)
T PRK14243        161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF  240 (264)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence            9999999999999999999999999999999999987667899999999998765 99999998         8999999


Q ss_pred             cChhhHhcc
Q 044927          437 DLPSKLMET  445 (467)
Q Consensus       437 g~~~~l~~~  445 (467)
                      |+++++.+.
T Consensus       241 ~~~~~~~~~  249 (264)
T PRK14243        241 DRTEKIFNS  249 (264)
T ss_pred             CCHHHHHhC
Confidence            999999753

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-46  Score=358.40  Aligned_cols=216  Identities=24%  Similarity=0.383  Sum_probs=182.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCC-CCCHHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDIC-SMGLKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~-~~~~~~  293 (467)
                      .++++|+++.|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++. ..+...
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~   80 (249)
T PRK14253          3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD   80 (249)
T ss_pred             eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence            4899999999963  3599999999999999999999999999999999999986     5999999999885 345567


Q ss_pred             HhcccEEEcCCCccccccHHHhcCcCC---CC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          294 LRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      +|+.++|+||++.+|+.|+.||+.+..   .. .+    +++.++++..++.+.+       .........+||||||||
T Consensus        81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr  153 (249)
T PRK14253         81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR  153 (249)
T ss_pred             HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence            788999999999999899999996421   11 11    2233445555554322       123344567899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++..
T Consensus       154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (249)
T PRK14253        154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS  233 (249)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            99999999999999999999999999999999999998667999999999999876 99999999999999999998864

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=361.71  Aligned_cols=218  Identities=24%  Similarity=0.392  Sum_probs=182.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~~  291 (467)
                      ..++++|++++|++  .++|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        23 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~  100 (271)
T PRK14238         23 VVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV  100 (271)
T ss_pred             eEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence            36999999999964  348999999999999999999999999999999999997     699999999998853  345


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCC---CCCHH-----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYSDN-----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~~~~-----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      ..+++.++|+||++.+|..|++||+.+..   ...++     .+.++++..++.+       ++.......+..||||||
T Consensus       101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~  173 (271)
T PRK14238        101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ  173 (271)
T ss_pred             HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence            56788999999999999889999996421   11111     1223333333211       222334456688999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus       174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  253 (271)
T PRK14238        174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI  253 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999987668999999999999865 999999999999999999998


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      ...
T Consensus       254 ~~~  256 (271)
T PRK14238        254 FSN  256 (271)
T ss_pred             HcC
Confidence            754

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-45  Score=357.76  Aligned_cols=217  Identities=22%  Similarity=0.392  Sum_probs=183.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~  292 (467)
                      .++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  +..
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   81 (251)
T PRK14270          4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV   81 (251)
T ss_pred             EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence            5899999999963  3599999999999999999999999999999999999875     799999999998643  334


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCC---CC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+++.++|+||++.+|+.|++||+.+..   .. ..    +++.++++.+++.+.+.       .........|||||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q  154 (251)
T PRK14270         82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQ  154 (251)
T ss_pred             HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHH
Confidence            6688899999999999999999996421   11 11    23445666666533221       1233456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++||||++++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14270        155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF  234 (251)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence            999999999999999999999999999999999999987667999999999998775 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       235 ~~  236 (251)
T PRK14270        235 LE  236 (251)
T ss_pred             cC
Confidence            53

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-46  Score=359.59  Aligned_cols=217  Identities=26%  Similarity=0.435  Sum_probs=182.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~  292 (467)
                      .|+++|+++.|++  +++++|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  +..
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~   80 (250)
T PRK14262          3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT   80 (250)
T ss_pred             eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence            4899999999963  3589999999999999999999999999999999999984     899999999988653  234


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+++.++|+||++.+|..|++||+.+..    ...+    +++.++++..++.+.+.       ...+....+|||||||
T Consensus        81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q  153 (250)
T PRK14262         81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQ  153 (250)
T ss_pred             HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHH
Confidence            5678899999999999899999996421    1111    22444555555543221       2234556889999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus       154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14262        154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV  233 (250)
T ss_pred             HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            99999999999999999999999999999999999998766899999999999876 49999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       234 ~~  235 (250)
T PRK14262        234 ER  235 (250)
T ss_pred             hC
Confidence            53

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=5.9e-46  Score=358.22  Aligned_cols=211  Identities=21%  Similarity=0.257  Sum_probs=173.8

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHH-hcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDL-RTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~-r~~  297 (467)
                      |+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|.++...+.... +..
T Consensus         1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   78 (243)
T TIGR01978         1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG   78 (243)
T ss_pred             CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence            478999999963  35999999999999999999999999999999999994  7999999999999987776554 445


Q ss_pred             cEEEcCCCccccc-cHHHhcCcCC----C------CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCC-CCChh
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPLG----M------YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE-NWSVG  361 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~~----~------~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~-~LSgG  361 (467)
                      ++|+||++.+|++ |+++|+.+..    .      .+    .+++.++++..++.+.          ....... .||||
T Consensus        79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS~G  148 (243)
T TIGR01978        79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSVNEGFSGG  148 (243)
T ss_pred             eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hcccccccCcCHH
Confidence            9999999998876 8999985311    0      01    1223344444444321          1112223 59999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEecC
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g~  438 (467)
                      ||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+..  ||++++|++|++++.|+
T Consensus       149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~  228 (243)
T TIGR01978       149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD  228 (243)
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence            9999999999999999999999999999999999999999864 47999999999999875  79999999999999999


Q ss_pred             hhhHh
Q 044927          439 PSKLM  443 (467)
Q Consensus       439 ~~~l~  443 (467)
                      ++++.
T Consensus       229 ~~~~~  233 (243)
T TIGR01978       229 VELAK  233 (243)
T ss_pred             HHHhc
Confidence            88654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=1.3e-45  Score=359.86  Aligned_cols=210  Identities=21%  Similarity=0.315  Sum_probs=178.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCC-----CH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSM-----GL  291 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~-----~~  291 (467)
                      .++++||++.|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|+   +|+|.++|.++...     +.
T Consensus         4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~   81 (262)
T PRK09984          4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI   81 (262)
T ss_pred             EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence            4899999999963  35999999999999999999999999999999999999986   49999999988653     23


Q ss_pred             HHHhcccEEEcCCCcccc-ccHHHhcCcCCC------------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCC
Q 044927          292 KDLRTKLSIIPQEPTLFR-GSVRTNLDPLGM------------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEG  355 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~-~tv~enl~~~~~------------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g  355 (467)
                      ..+++.++|+||++.+|. .|+.+|+.+...            ..   .+++.++++..++.+..++           ..
T Consensus        82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~  150 (262)
T PRK09984         82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV  150 (262)
T ss_pred             HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence            456788999999999887 499999964210            01   1234556666666554444           34


Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCE
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGE  432 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~  432 (467)
                      .+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++..  .++|+|++||+++.+. .||++++|++|+
T Consensus       151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~  230 (262)
T PRK09984        151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH  230 (262)
T ss_pred             cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            7899999999999999999999999999999999999999999999864  3799999999999865 599999999999


Q ss_pred             EEEecChhhH
Q 044927          433 LVEYDLPSKL  442 (467)
Q Consensus       433 iv~~g~~~~l  442 (467)
                      +++.|+++++
T Consensus       231 i~~~g~~~~~  240 (262)
T PRK09984        231 VFYDGSSQQF  240 (262)
T ss_pred             EEEeCCHHHh
Confidence            9999999986

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1.1e-45  Score=370.70  Aligned_cols=218  Identities=23%  Similarity=0.386  Sum_probs=180.0

Q ss_pred             cEEEEeEEEEeCC--CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHH
Q 044927          220 RIELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDL  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~--~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~  294 (467)
                      .++++|+++.|+.  +...+++|+||+|++||++||+|+||||||||+++|+|+++|+   +|+|.++|.++..++.+++
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            5899999999953  2235899999999999999999999999999999999999996   9999999999998877665


Q ss_pred             h----cccEEEcCCC--cccc-ccHHHhcC----cCCCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCC
Q 044927          295 R----TKLSIIPQEP--TLFR-GSVRTNLD----PLGMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS  359 (467)
Q Consensus       295 r----~~i~~v~Q~~--~lf~-~tv~enl~----~~~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS  359 (467)
                      +    +.|+||||+|  .+++ .|+.+|+.    .....+.+    ++.+.++.+++       +++. ..++....+||
T Consensus        92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS  163 (330)
T PRK09473         92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS  163 (330)
T ss_pred             HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence            3    4799999998  4554 47877763    11122222    23344555444       2211 22445668999


Q ss_pred             hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEe
Q 044927          360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEY  436 (467)
Q Consensus       360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~  436 (467)
                      ||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||||+||++|+|++.
T Consensus       164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~  243 (330)
T PRK09473        164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY  243 (330)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999988643  7899999999999875 999999999999999


Q ss_pred             cChhhHhcc
Q 044927          437 DLPSKLMET  445 (467)
Q Consensus       437 g~~~~l~~~  445 (467)
                      |+++++.+.
T Consensus       244 g~~~~i~~~  252 (330)
T PRK09473        244 GNARDVFYQ  252 (330)
T ss_pred             CCHHHHHhC
Confidence            999999863

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-45  Score=355.07  Aligned_cols=209  Identities=26%  Similarity=0.396  Sum_probs=179.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +.+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++|
T Consensus         1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~   76 (237)
T TIGR00968         1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF   76 (237)
T ss_pred             CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence            478999999964  359999999999999999999999999999999999999999999999999876543  4678999


Q ss_pred             EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|++ |+.||+.+..   ..+    .+++.++++..++.+..++.           ..+||+||+||++||||+
T Consensus        77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral  145 (237)
T TIGR00968        77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL  145 (237)
T ss_pred             EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence            9999999975 9999996421   111    23345556666665544443           368999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +++|+++||||||++||+.+++.+.+.|++..+  ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  220 (237)
T TIGR00968       146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD  220 (237)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence            999999999999999999999999999998643  7999999999998765 99999999999999999999875

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=363.04  Aligned_cols=219  Identities=25%  Similarity=0.428  Sum_probs=183.4

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CC
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICS--MG  290 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~--~~  290 (467)
                      ...++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+
T Consensus        37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~  114 (285)
T PRK14254         37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD  114 (285)
T ss_pred             CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence            346999999999964  359999999999999999999999999999999999997     689999999999864  34


Q ss_pred             HHHHhcccEEEcCCCccccccHHHhcCcCC---CCC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       291 ~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      ...++++++|+||++.+|+.|+.||+.+..   ...   ++++.++++..++...+.       ...+....+|||||||
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q  187 (285)
T PRK14254        115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ  187 (285)
T ss_pred             hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence            556788999999999999889999996421   111   234555666666533221       1233456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEE-EEeCCEEEEecChhhH
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFM-VLSYGELVEYDLPSKL  442 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~-vl~~G~iv~~g~~~~l  442 (467)
                      |++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus       188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999997666899999999999875 99975 6799999999999998


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      .+.
T Consensus       268 ~~~  270 (285)
T PRK14254        268 FEN  270 (285)
T ss_pred             HhC
Confidence            753

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.7e-46  Score=358.99  Aligned_cols=217  Identities=24%  Similarity=0.392  Sum_probs=182.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~  292 (467)
                      .|+++|++++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...  +..
T Consensus         6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   83 (253)
T PRK14261          6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV   83 (253)
T ss_pred             eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence            5899999999963  3599999999999999999999999999999999999763     489999999998765  345


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCCC----CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM----YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      ..++.++|+||++.+|+.|++||+.+...    ..    ++.+.++++.+++.+.       +.+..+..+.+|||||||
T Consensus        84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q  156 (253)
T PRK14261         84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQQ  156 (253)
T ss_pred             hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHHH
Confidence            67888999999999998899999974311    11    1223444454444322       223345667899999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14261        157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF  236 (253)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence            999999999999999999999999999999999999987667999999999999864 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       237 ~~  238 (253)
T PRK14261        237 EN  238 (253)
T ss_pred             hC
Confidence            53

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=5.7e-46  Score=356.03  Aligned_cols=210  Identities=28%  Similarity=0.403  Sum_probs=182.2

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|++++|++  +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+.  .++.++|
T Consensus         1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~   76 (232)
T cd03300           1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT   76 (232)
T ss_pred             CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence            468999999964  359999999999999999999999999999999999999999999999999876554  3678999


Q ss_pred             EcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ++|++.+|.+ |+++|+.+..   ..+    ++++.++++..++.+++.+.|           ..||||||||++||||+
T Consensus        77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral  145 (232)
T cd03300          77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL  145 (232)
T ss_pred             EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence            9999999865 9999986321   111    234556677777776666554           68999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +++|+++||||||++||+.+++.+.+.+++..+  ++|+|++||+++.+.. |||+++|++|++++.|+++++.+.
T Consensus       146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~  221 (232)
T cd03300         146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE  221 (232)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence            999999999999999999999999999988643  7999999999999865 999999999999999999988753

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.6e-47  Score=350.17  Aligned_cols=214  Identities=25%  Similarity=0.419  Sum_probs=183.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i  298 (467)
                      -+++++++++|++-  .+++|+||++++||++||+|||||||||++|+|+|+|+|++|+|.++|+++..++++.. |..|
T Consensus         4 lL~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             eeeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence            37899999999643  49999999999999999999999999999999999999999999999999999998765 5669


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCC-------------C--CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGM-------------Y--SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW  358 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~-------------~--~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L  358 (467)
                      +--||.+.+|++ ||.||+.....             +  .+    ++..+.++.++           ++...++...+|
T Consensus        82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vg-----------L~~~a~~~A~~L  150 (250)
T COG0411          82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVG-----------LGELADRPAGNL  150 (250)
T ss_pred             eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcC-----------CchhhcchhhcC
Confidence            999999999976 99999843210             0  11    12223344444           444455566889


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                      |+||++|+.|||||+.+|++|+||||.+||.+.....+.+.|++..+  |.|+++|.||++.+.. ||||+||+.|++++
T Consensus       151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA  230 (250)
T COG0411         151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA  230 (250)
T ss_pred             ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence            99999999999999999999999999999999999999999999764  5999999999999876 99999999999999


Q ss_pred             ecChhhHhccC
Q 044927          436 YDLPSKLMETN  446 (467)
Q Consensus       436 ~g~~~~l~~~~  446 (467)
                      +|+|+|+.+..
T Consensus       231 eG~P~eV~~dp  241 (250)
T COG0411         231 EGTPEEVRNNP  241 (250)
T ss_pred             cCCHHHHhcCH
Confidence            99999998653

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-45  Score=371.20  Aligned_cols=221  Identities=22%  Similarity=0.392  Sum_probs=182.2

Q ss_pred             cEEEEeEEEEeCC--CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCccEEEEcCEeCCCCCHHH
Q 044927          220 RIELEDLKVRYRP--NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE----PENGRILIDGLDICSMGLKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~--~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~----p~~G~i~i~g~~i~~~~~~~  293 (467)
                      .|+++|++++|+.  +...+|+|+||+|++||+++|+|+||||||||+++|+|+.+    |++|+|.++|+++..++.++
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE   82 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence            4899999999953  22358999999999999999999999999999999999996    58999999999998887665


Q ss_pred             Hh----cccEEEcCCCc--ccc-ccHHHhcCcC-------CC-C-C----HHHHHHHHHHcChHH---HHHhCCCccccc
Q 044927          294 LR----TKLSIIPQEPT--LFR-GSVRTNLDPL-------GM-Y-S----DNEIWEAMEKCQLKA---TISRLPMLLDSS  350 (467)
Q Consensus       294 ~r----~~i~~v~Q~~~--lf~-~tv~enl~~~-------~~-~-~----~~~~~~~~~~~~l~~---~i~~l~~g~~t~  350 (467)
                      ++    +.|+||||+|.  +++ .|+.+|+...       +. . .    .+++.++++.+++.+   ..++.       
T Consensus        83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-------  155 (330)
T PRK15093         83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-------  155 (330)
T ss_pred             HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-------
Confidence            43    47999999986  333 4888887420       00 0 1    234566777777753   23333       


Q ss_pred             ccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEE
Q 044927          351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMV  427 (467)
Q Consensus       351 v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~v  427 (467)
                          ..+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||||++
T Consensus       156 ----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v  231 (330)
T PRK15093        156 ----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV  231 (330)
T ss_pred             ----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence                378999999999999999999999999999999999999999999998643  7999999999999975 999999


Q ss_pred             EeCCEEEEecChhhHhcc-CchHHH
Q 044927          428 LSYGELVEYDLPSKLMET-NSAFSK  451 (467)
Q Consensus       428 l~~G~iv~~g~~~~l~~~-~~~~~~  451 (467)
                      |++|+|++.|+++++.+. ...|.+
T Consensus       232 m~~G~ive~g~~~~i~~~p~~~y~~  256 (330)
T PRK15093        232 LYCGQTVETAPSKELVTTPHHPYTQ  256 (330)
T ss_pred             EECCEEEEECCHHHHHhCCCCHHHH
Confidence            999999999999999763 234543

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.7e-46  Score=375.30  Aligned_cols=207  Identities=21%  Similarity=0.265  Sum_probs=175.2

Q ss_pred             EEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE----eCCCCCHHHH---h-cc
Q 044927          226 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL----DICSMGLKDL---R-TK  297 (467)
Q Consensus       226 vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~----~i~~~~~~~~---r-~~  297 (467)
                      +.++|+  ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.    ++...+...+   | ++
T Consensus        30 ~~~~~g--~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~  107 (382)
T TIGR03415        30 ILDETG--LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR  107 (382)
T ss_pred             HHHhhC--CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence            344453  234899999999999999999999999999999999999999999999996    5666655443   3 57


Q ss_pred             cEEEcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ++||||++.+|+ .|++||+.+..   ..+.    +++.++++.+++.++.++.|           .+||||||||++||
T Consensus       108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LA  176 (382)
T TIGR03415       108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLA  176 (382)
T ss_pred             EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence            999999999997 69999996421   1222    34566777777776655544           67999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |||+.+|++|||||||++||+.++..+++.|.++.+  ++|+|+|||+++.+. .||||++|++|++++.|++++++..
T Consensus       177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~  255 (382)
T TIGR03415       177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN  255 (382)
T ss_pred             HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence            999999999999999999999999999999988643  799999999999875 5999999999999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.3e-45  Score=348.90  Aligned_cols=201  Identities=24%  Similarity=0.413  Sum_probs=175.0

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++||+++|+.    .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+  .+++.++|
T Consensus         1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~   74 (213)
T TIGR01277         1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM   74 (213)
T ss_pred             CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence            468999999952    468999999999999999999999999999999999999999999999987543  35778999


Q ss_pred             EcCCCccccc-cHHHhcCcC--CCC-----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPL--GMY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~--~~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|.. |+.||+.+.  ...     .++++.++++..++.+..++.|           .+||||||||++||||+
T Consensus        75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral  143 (213)
T TIGR01277        75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL  143 (213)
T ss_pred             EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence            9999999875 999998632  111     1345667788888877776665           57999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~  438 (467)
                      +.+|+++||||||++||+.++..+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus       144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            99999999999999999999999999999864  37899999999998765 99999999999998874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-45  Score=359.96  Aligned_cols=211  Identities=23%  Similarity=0.342  Sum_probs=180.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--------ccEEEEcCEeCCCCCHH
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--------NGRILIDGLDICSMGLK  292 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~--------~G~i~i~g~~i~~~~~~  292 (467)
                      ++++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|+        +|+|.++|.++...+..
T Consensus         2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~   79 (272)
T PRK13547          2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP   79 (272)
T ss_pred             eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence            789999999964  35999999999999999999999999999999999999998        99999999999877777


Q ss_pred             HHhcccEEEcCCCc-cccccHHHhcCcCCC--------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCCh
Q 044927          293 DLRTKLSIIPQEPT-LFRGSVRTNLDPLGM--------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV  360 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~-lf~~tv~enl~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSg  360 (467)
                      .+++.++|+||++. +|..|++||+.+...        ..   .+.++++++..++.+           .++....+|||
T Consensus        80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg  148 (272)
T PRK13547         80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLSG  148 (272)
T ss_pred             HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence            78888999999986 567899999964211        11   122344555555543           34445578999


Q ss_pred             hHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHh-hcCEEEEE
Q 044927          361 GQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTIT-DSDMFMVL  428 (467)
Q Consensus       361 Gq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~-~~d~i~vl  428 (467)
                      |||||++|||||+         .+|++|||||||++||+.+.+.+.+.+++.. . ++|+|+|||+++.+. .||++++|
T Consensus       149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l  228 (272)
T PRK13547        149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML  228 (272)
T ss_pred             HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            9999999999999         5999999999999999999999999999864 3 799999999999986 49999999


Q ss_pred             eCCEEEEecChhhHhc
Q 044927          429 SYGELVEYDLPSKLME  444 (467)
Q Consensus       429 ~~G~iv~~g~~~~l~~  444 (467)
                      ++|++++.|+++++.+
T Consensus       229 ~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        229 ADGAIVAHGAPADVLT  244 (272)
T ss_pred             ECCeEEEecCHHHHcC
Confidence            9999999999998865

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=357.99  Aligned_cols=216  Identities=24%  Similarity=0.421  Sum_probs=180.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~~  292 (467)
                      .++++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+..
T Consensus         4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~   81 (258)
T PRK14241          4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV   81 (258)
T ss_pred             cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence            4899999999964  3599999999999999999999999999999999999974     69999999998853  3455


Q ss_pred             HHhcccEEEcCCCcccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          293 DLRTKLSIIPQEPTLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      .+|+.++|++|++.+|. .|++||+.+.    ...+.    +.+.++++..++.+.+       .........+||||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~  154 (258)
T PRK14241         82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ  154 (258)
T ss_pred             HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence            67889999999999887 4999999632    11111    2334455566553222       1223345578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEe------CCEEEEe
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLS------YGELVEY  436 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~------~G~iv~~  436 (467)
                      ||++|||||+.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+. .|||+++|+      +|+|++.
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~  234 (258)
T PRK14241        155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI  234 (258)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence            999999999999999999999999999999999999998766789999999999876 599999997      8999999


Q ss_pred             cChhhHhc
Q 044927          437 DLPSKLME  444 (467)
Q Consensus       437 g~~~~l~~  444 (467)
                      |+++++..
T Consensus       235 ~~~~~~~~  242 (258)
T PRK14241        235 DDTEKIFS  242 (258)
T ss_pred             CCHHHHHh
Confidence            99999875

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-45  Score=373.27  Aligned_cols=210  Identities=24%  Similarity=0.365  Sum_probs=181.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHHHhc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRT  296 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~~~r~  296 (467)
                      |++ |++++|++  . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.    +....++
T Consensus         2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   76 (352)
T PRK11144          2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR   76 (352)
T ss_pred             eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence            667 99999963  2 23 89999999999999999999999999999999999999999999988653    2344678


Q ss_pred             ccEEEcCCCcccc-ccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          297 KLSIIPQEPTLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       297 ~i~~v~Q~~~lf~-~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +++|+||++.+|+ .|++||+.+.. ....+++.++++..++.+..++.|           .+||||||||++|||||+.
T Consensus        77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~  145 (352)
T PRK11144         77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT  145 (352)
T ss_pred             CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence            8999999999986 59999997532 223456777788887766665554           6899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      +|++|||||||++||+.+++.+.+.|++..+  ++|+|+|||+++.+.. ||++++|++|++++.|+++++....
T Consensus       146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p  220 (352)
T PRK11144        146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS  220 (352)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence            9999999999999999999999999988643  7899999999998765 9999999999999999999998643

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-45  Score=360.15  Aligned_cols=217  Identities=27%  Similarity=0.392  Sum_probs=183.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCC-HHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMG-LKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~-~~~  293 (467)
                      .++++||+++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+ ...
T Consensus        21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   98 (276)
T PRK14271         21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE   98 (276)
T ss_pred             EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence            5899999999963  3599999999999999999999999999999999999986     6999999999987653 346


Q ss_pred             HhcccEEEcCCCccccccHHHhcCcCC----CCCHHHH----HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          294 LRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSDNEI----WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      ++++++|+||++.+|+.|+++|+.+..    ..+.++.    .+.++.+++.+.       +.+.+.....+||||||||
T Consensus        99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~qr  171 (276)
T PRK14271         99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQL  171 (276)
T ss_pred             HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHHH
Confidence            788999999999999899999996421    1233332    233444444322       1223445668899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus       172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  251 (276)
T PRK14271        172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS  251 (276)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999987667899999999998775 99999999999999999999976


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       252 ~  252 (276)
T PRK14271        252 S  252 (276)
T ss_pred             C
Confidence            4

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-45  Score=359.21  Aligned_cols=218  Identities=22%  Similarity=0.398  Sum_probs=183.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~  291 (467)
                      ..|+++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  ...
T Consensus        19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~   96 (274)
T PRK14265         19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS   96 (274)
T ss_pred             ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence            36999999999964  3599999999999999999999999999999999999863     58999999998864  234


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCCC---C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      ..+|+.++|+||++.+|+.|+.+|+.+...   .   .++.+.++++.+++.+.+.       .........||||||||
T Consensus        97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr  169 (274)
T PRK14265         97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR  169 (274)
T ss_pred             HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence            467889999999999998899999964211   1   1223445566666543332       12334567899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe---------CCEEEE
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS---------YGELVE  435 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~---------~G~iv~  435 (467)
                      ++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|+         +|++++
T Consensus       170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~  249 (274)
T PRK14265        170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE  249 (274)
T ss_pred             HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            99999999999999999999999999999999999988667999999999998865 99999998         899999


Q ss_pred             ecChhhHhcc
Q 044927          436 YDLPSKLMET  445 (467)
Q Consensus       436 ~g~~~~l~~~  445 (467)
                      .|+++++...
T Consensus       250 ~g~~~~~~~~  259 (274)
T PRK14265        250 FSPTEQMFGS  259 (274)
T ss_pred             eCCHHHHHhC
Confidence            9999998753

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.1e-46  Score=351.97  Aligned_cols=216  Identities=27%  Similarity=0.395  Sum_probs=190.1

Q ss_pred             cEEEEeEEEEeCCCC----------------------CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 044927          220 RIELEDLKVRYRPNT----------------------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG  277 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~----------------------~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G  277 (467)
                      .|+++||++-|+.+.                      ...++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            588999998886421                      1258999999999999999999999999999999999999999


Q ss_pred             EEEEcCEeCCCCCHHHH----hcccEEEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCC
Q 044927          278 RILIDGLDICSMGLKDL----RTKLSIIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPM  345 (467)
Q Consensus       278 ~i~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~  345 (467)
                      +|+++|.|+..++.+++    |+++++|||+.-|++- ||.||..|+-+   .+    .+...++++.+||..|-++.| 
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-  162 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-  162 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence            99999999999987765    3579999999998865 99999986522   22    344667899999999999988 


Q ss_pred             cccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hc
Q 044927          346 LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DS  422 (467)
Q Consensus       346 g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~  422 (467)
                                .+|||||||||.|||||..+|+||++|||+|+|||--+..+++.|.++.  -+||+++|||+++++. ..
T Consensus       163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence                      6799999999999999999999999999999999999999999887753  3799999999999865 49


Q ss_pred             CEEEEEeCCEEEEecChhhHhccC
Q 044927          423 DMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       423 d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |||.+|++|+|++.|+|+|++.+.
T Consensus       233 ~rIaimkdG~ivQ~Gtp~eIl~~P  256 (386)
T COG4175         233 DRIAIMKDGEIVQVGTPEEILLNP  256 (386)
T ss_pred             ceEEEecCCeEEEeCCHHHHHcCc
Confidence            999999999999999999998743

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-45  Score=357.80  Aligned_cols=218  Identities=22%  Similarity=0.394  Sum_probs=183.8

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS--MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~--~~~  291 (467)
                      +.++++||+++|++  ..+|+|+||++++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++..  .+.
T Consensus         6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (259)
T PRK14260          6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI   83 (259)
T ss_pred             ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence            36999999999963  3589999999999999999999999999999999999985     48999999998854  344


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      ..+++.++|+||++.+|+.|++||+.+..    ...+    +.+.++++.+++.+.+..       .....+..||||||
T Consensus        84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~  156 (259)
T PRK14260         84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ  156 (259)
T ss_pred             HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence            56788999999999999999999996421    1121    234456666666433321       23345678999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe-----CCEEEEec
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS-----YGELVEYD  437 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~-----~G~iv~~g  437 (467)
                      ||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+     +|++++.|
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~  236 (259)
T PRK14260        157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG  236 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence            9999999999999999999999999999999999999987667999999999999875 99999998     59999999


Q ss_pred             ChhhHhcc
Q 044927          438 LPSKLMET  445 (467)
Q Consensus       438 ~~~~l~~~  445 (467)
                      +++++.+.
T Consensus       237 ~~~~~~~~  244 (259)
T PRK14260        237 VTTQIFSN  244 (259)
T ss_pred             CHHHHhcC
Confidence            99998753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-45  Score=361.77  Aligned_cols=218  Identities=24%  Similarity=0.360  Sum_probs=181.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~--~~  291 (467)
                      ..++++||+++|++  .++|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|.++...  +.
T Consensus        38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~  115 (286)
T PRK14275         38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE  115 (286)
T ss_pred             eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence            35899999999964  349999999999999999999999999999999999864     4999999999988643  23


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCC---CC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      ..+|+.++|+||++.+|+.|+.||+.+..   .. +.    +++.++++..++.+.+       ..........||||||
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~  188 (286)
T PRK14275        116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ  188 (286)
T ss_pred             HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence            45688999999999999889999996421   11 11    2234455555543211       1123345678999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus       189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~  268 (286)
T PRK14275        189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL  268 (286)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999987667899999999999865 999999999999999999998


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      .+.
T Consensus       269 ~~~  271 (286)
T PRK14275        269 FTN  271 (286)
T ss_pred             HhC
Confidence            753

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-45  Score=358.34  Aligned_cols=218  Identities=23%  Similarity=0.361  Sum_probs=183.9

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC----
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICS----  288 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~----  288 (467)
                      .+.|+++|++++|++  +++|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++..    
T Consensus        14 ~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~   91 (265)
T PRK14252         14 QQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE   91 (265)
T ss_pred             CceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence            456999999999964  3599999999999999999999999999999999999975     79999999987642    


Q ss_pred             CCHHHHhcccEEEcCCCccccccHHHhcCcCC---CC-----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCCh
Q 044927          289 MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG---MY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV  360 (467)
Q Consensus       289 ~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSg  360 (467)
                      .....+++.++|+||++.+|.+|++||+.+..   ..     .++++.++++.+++.+.       +.+..+.....|||
T Consensus        92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~  164 (265)
T PRK14252         92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLSG  164 (265)
T ss_pred             cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCCH
Confidence            23456788999999999999889999996421   11     12344555665555322       22334455688999


Q ss_pred             hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      ||+||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. |||+++|++|++++.|++
T Consensus       165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~  244 (265)
T PRK14252        165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT  244 (265)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999987667899999999999864 999999999999999999


Q ss_pred             hhHhc
Q 044927          440 SKLME  444 (467)
Q Consensus       440 ~~l~~  444 (467)
                      +++..
T Consensus       245 ~~~~~  249 (265)
T PRK14252        245 DTIFI  249 (265)
T ss_pred             HHHHh
Confidence            99874

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-45  Score=356.86  Aligned_cols=217  Identities=20%  Similarity=0.317  Sum_probs=185.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~  292 (467)
                      .+.+++++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  ...
T Consensus         8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   85 (261)
T PRK14263          8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV   85 (261)
T ss_pred             eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence            4899999999963  3599999999999999999999999999999999999987     799999999998643  334


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCCC---C---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGM---Y---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      .+++.++|+||++.+|..|+.||+.+...   .   ..+++.++++.+++.+.+..       ..++...+|||||+||+
T Consensus        86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv  158 (261)
T PRK14263         86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL  158 (261)
T ss_pred             hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence            66788999999999998999999964311   1   12355667777776544332       23345678999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe--------CCEEEEec
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS--------YGELVEYD  437 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~--------~G~iv~~g  437 (467)
                      +|||||+++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. |||+++|+        +|++++.|
T Consensus       159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g  238 (261)
T PRK14263        159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG  238 (261)
T ss_pred             HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence            9999999999999999999999999999999999998668899999999998765 99999996        89999999


Q ss_pred             ChhhHhcc
Q 044927          438 LPSKLMET  445 (467)
Q Consensus       438 ~~~~l~~~  445 (467)
                      +++++.+.
T Consensus       239 ~~~~~~~~  246 (261)
T PRK14263        239 PTAQIFQN  246 (261)
T ss_pred             CHHHHHhC
Confidence            99998763

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-45  Score=355.01  Aligned_cols=217  Identities=23%  Similarity=0.413  Sum_probs=184.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~  292 (467)
                      .++++||++.|++  +++|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.+||.++...  +..
T Consensus         3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   80 (250)
T PRK14266          3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV   80 (250)
T ss_pred             EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence            4789999999963  359999999999999999999999999999999999864     4899999999998653  355


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCC---C-CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLG---M-YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .++++++|+||++.+|+.|+.||+.+..   . .+.    +++.++++.+++.+.+..       ..+..+..|||||||
T Consensus        81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q  153 (250)
T PRK14266         81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ  153 (250)
T ss_pred             HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence            6788999999999999999999996421   1 122    234556777776554432       123456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14266        154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF  233 (250)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence            999999999999999999999999999999999999987678999999999998876 8999999999999999999986


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       234 ~~  235 (250)
T PRK14266        234 IN  235 (250)
T ss_pred             hC
Confidence            53

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=6.1e-45  Score=346.79  Aligned_cols=204  Identities=25%  Similarity=0.374  Sum_probs=176.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ++.++|
T Consensus         1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~   74 (223)
T TIGR03740         1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS   74 (223)
T ss_pred             CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence            478999999964  35999999999999999999999999999999999999999999999999875321    357999


Q ss_pred             EcCCCcccc-ccHHHhcCcC---CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          301 IPQEPTLFR-GSVRTNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      +||++.+|. .|++||+.+.   ....++++.++++..++.+..+..+           .+|||||+||++||||++.+|
T Consensus        75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~~rv~laral~~~p  143 (223)
T TIGR03740        75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA-----------KQFSLGMKQRLGIAIALLNHP  143 (223)
T ss_pred             EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH-----------hhCCHHHHHHHHHHHHHhcCC
Confidence            999998886 5999998632   1234556777778887776555433           679999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhh
Q 044927          377 RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~  441 (467)
                      +++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .|||+++|++|++++.|++++
T Consensus       144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            9999999999999999999999999864 4789999999999986 599999999999999998765

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-45  Score=362.96  Aligned_cols=218  Identities=28%  Similarity=0.470  Sum_probs=183.2

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--C
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-----PENGRILIDGLDICSM--G  290 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-----p~~G~i~i~g~~i~~~--~  290 (467)
                      ...|+++||+++|++  .++|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...  +
T Consensus        43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~  120 (305)
T PRK14264         43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN  120 (305)
T ss_pred             CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            346999999999964  359999999999999999999999999999999999986     6899999999998643  3


Q ss_pred             HHHHhcccEEEcCCCccccccHHHhcCcCCC---------------C-----CHHHHHHHHHHcChHHHHHhCCCccccc
Q 044927          291 LKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM---------------Y-----SDNEIWEAMEKCQLKATISRLPMLLDSS  350 (467)
Q Consensus       291 ~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~---------------~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~  350 (467)
                      ...+|+.++|+||++.+|+.|++||+.+...               .     .++++.++++.+++.+       ++++.
T Consensus       121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~  193 (305)
T PRK14264        121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR  193 (305)
T ss_pred             HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence            4567889999999999998999999964210               0     0123444455554432       23334


Q ss_pred             ccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEE-EEE
Q 044927          351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMF-MVL  428 (467)
Q Consensus       351 v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i-~vl  428 (467)
                      +.....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus       194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l  273 (305)
T PRK14264        194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL  273 (305)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence            45667899999999999999999999999999999999999999999999997667899999999999865 9997 578


Q ss_pred             eCCEEEEecChhhHhc
Q 044927          429 SYGELVEYDLPSKLME  444 (467)
Q Consensus       429 ~~G~iv~~g~~~~l~~  444 (467)
                      ++|++++.|+++++.+
T Consensus       274 ~~G~i~~~g~~~~~~~  289 (305)
T PRK14264        274 TGGELVEYDDTDKIFE  289 (305)
T ss_pred             cCCEEEEeCCHHHHHh
Confidence            9999999999999875

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-45  Score=354.79  Aligned_cols=201  Identities=24%  Similarity=0.294  Sum_probs=171.5

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...     +..++|
T Consensus         2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~   74 (255)
T PRK11248          2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV   74 (255)
T ss_pred             EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence            789999999964  3599999999999999999999999999999999999999999999999987642     246899


Q ss_pred             EcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ++|++.+|+ .|++||+.+..   ...    .+++.++++..++.+...+           ...+||||||||++|||||
T Consensus        75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral  143 (255)
T PRK11248         75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL  143 (255)
T ss_pred             EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence            999999887 59999996421   112    1235556666666554443           3478999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-C-CCceEEEEccChhHHhh-cCEEEEEe--CCEEEEecCh
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREE-F-PGSTVITVAHRVPTITD-SDMFMVLS--YGELVEYDLP  439 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~-~~~tvi~itH~l~~~~~-~d~i~vl~--~G~iv~~g~~  439 (467)
                      +.+|++|||||||++||+.+...+.+.|++. . .++|+|++||+++.+.. ||++++|+  +|++++.++.
T Consensus       144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            9999999999999999999999999999886 3 48999999999998865 99999998  5999998764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=3.7e-45  Score=351.08  Aligned_cols=209  Identities=25%  Similarity=0.440  Sum_probs=181.4

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|++++|++  + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+.  .++.++|
T Consensus         1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~   75 (235)
T cd03299           1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY   75 (235)
T ss_pred             CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence            468999999963  3 7999999999999999999999999999999999999999999999999876554  3678999


Q ss_pred             EcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +||++.+|. .|+.||+.+..   ..+    ++++.++++.+++.+++.+.+           .+||||||||++||||+
T Consensus        76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral  144 (235)
T cd03299          76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL  144 (235)
T ss_pred             EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence            999999885 69999996321   111    234556777777776665544           67999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +++|++++|||||++||+.+.+.+.+.+++...  ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  220 (235)
T cd03299         145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK  220 (235)
T ss_pred             HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            999999999999999999999999999998643  8999999999999875 999999999999999999988754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-45  Score=354.40  Aligned_cols=217  Identities=25%  Similarity=0.417  Sum_probs=179.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCC--CCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-----~G~i~i~g~~i~~--~~~~  292 (467)
                      .++++||+++|++  +++++|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++..  .+..
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   81 (252)
T PRK14272          4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV   81 (252)
T ss_pred             EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence            4889999999963  35999999999999999999999999999999999999874     8999999999864  3345


Q ss_pred             HHhcccEEEcCCCccccc-cHHHhcCcC---CCC-CHHHHH----HHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          293 DLRTKLSIIPQEPTLFRG-SVRTNLDPL---GMY-SDNEIW----EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~-tv~enl~~~---~~~-~~~~~~----~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      .+|+.++|++|++.+|.. |+.||+.+.   ... .+++..    +.++..++.+.+   +    ........+||||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~----~~~~~~~~~LS~G~~  154 (252)
T PRK14272         82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---K----DRLKTPATGLSGGQQ  154 (252)
T ss_pred             HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---h----hhhcCCcccCCHHHH
Confidence            678889999999998875 999999632   111 222222    223333332211   1    122334578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus       155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14272        155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL  234 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999987667999999999999885 999999999999999999998


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      +..
T Consensus       235 ~~~  237 (252)
T PRK14272        235 FTN  237 (252)
T ss_pred             HhC
Confidence            764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=3.7e-45  Score=355.93  Aligned_cols=217  Identities=25%  Similarity=0.413  Sum_probs=177.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-----CCCCCHHH-
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKD-  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~-----i~~~~~~~-  293 (467)
                      .++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +...+... 
T Consensus         6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~   83 (258)
T PRK11701          6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER   83 (258)
T ss_pred             eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence            4899999999964  359999999999999999999999999999999999999999999999998     77665544 


Q ss_pred             ---HhcccEEEcCCCc--ccc-ccHHHhcCc----CCCCCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhH
Q 044927          294 ---LRTKLSIIPQEPT--LFR-GSVRTNLDP----LGMYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQ  362 (467)
Q Consensus       294 ---~r~~i~~v~Q~~~--lf~-~tv~enl~~----~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq  362 (467)
                         .++.++|+||++.  ++. .|+.+|+..    .......+..+     ...++++.++  ++ +..+..+.+|||||
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~~LS~Gq  156 (258)
T PRK11701         84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVE--IDAARIDDLPTTFSGGM  156 (258)
T ss_pred             HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcC--CChhHHhCCCccCCHHH
Confidence               3567999999984  333 478888742    11111111111     1233444442  32 34456678999999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      |||++|||||+.+|++|||||||++||+.++..+.+.|++..+  +.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus       157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~  236 (258)
T PRK11701        157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT  236 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999988532  7899999999999975 999999999999999999


Q ss_pred             hhHhcc
Q 044927          440 SKLMET  445 (467)
Q Consensus       440 ~~l~~~  445 (467)
                      +++...
T Consensus       237 ~~~~~~  242 (258)
T PRK11701        237 DQVLDD  242 (258)
T ss_pred             HHHhcC
Confidence            998754

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=7.7e-45  Score=352.86  Aligned_cols=228  Identities=23%  Similarity=0.340  Sum_probs=183.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHHh
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLR  295 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r  295 (467)
                      .++++|++++| +  .++|+|+||++++||+++|+||||||||||+++|+|+++|    ++|+|.++|.++...  ...+
T Consensus         4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~   78 (254)
T PRK10418          4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG   78 (254)
T ss_pred             EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence            58999999999 2  3589999999999999999999999999999999999999    999999999988632  2234


Q ss_pred             cccEEEcCCCc-ccc--ccHHHhcCc----CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          296 TKLSIIPQEPT-LFR--GSVRTNLDP----LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       296 ~~i~~v~Q~~~-lf~--~tv~enl~~----~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      +.++|+||++. .|.  .|+.+|+..    .+ ...++++.+.++.+++.+.        ++.++....+||||||||++
T Consensus        79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~  150 (254)
T PRK10418         79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM  150 (254)
T ss_pred             ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence            67999999985 343  477777632    11 1223456666776665431        11334556889999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|++|||||||++||+.++..+.+.|++..  .++|+|++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus       151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  230 (254)
T PRK10418        151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN  230 (254)
T ss_pred             HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            9999999999999999999999999999999998863  37899999999999864 99999999999999999999876


Q ss_pred             cC--chHHHHHHHHHhhh
Q 044927          445 TN--SAFSKLVAEYRSSY  460 (467)
Q Consensus       445 ~~--~~~~~l~~~~~~~~  460 (467)
                      ..  ..++.++..+...|
T Consensus       231 ~~~~~~~~~~~~~~~~~~  248 (254)
T PRK10418        231 APKHAVTRSLVSAHLALY  248 (254)
T ss_pred             CCCCHHHHHHHHhhhhcc
Confidence            42  23444555544444

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-45  Score=355.39  Aligned_cols=218  Identities=25%  Similarity=0.442  Sum_probs=183.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCC--CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-----NGRILIDGLDICS--MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-----~G~i~i~g~~i~~--~~~  291 (467)
                      +.++++|++++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++..  .+.
T Consensus         6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~   83 (261)
T PRK14258          6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL   83 (261)
T ss_pred             ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence            36999999999964  35899999999999999999999999999999999999985     8999999998753  344


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      ..+|+.++|+||++.+|+.|++||+.+.    +..+.    +.+.++++..++.+++..       ..+.....||||||
T Consensus        84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~  156 (261)
T PRK14258         84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ  156 (261)
T ss_pred             HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence            5678889999999999989999999632    11121    234455666665443322       23455678999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC-----CEEEE
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY-----GELVE  435 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~-----G~iv~  435 (467)
                      ||++|||||+++|++|||||||++||+.+...+.+.|++..  .++|+|++||+++.+.. ||||++|++     |++++
T Consensus       157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~  236 (261)
T PRK14258        157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE  236 (261)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence            99999999999999999999999999999999999998853  48999999999998875 999999999     99999


Q ss_pred             ecChhhHhcc
Q 044927          436 YDLPSKLMET  445 (467)
Q Consensus       436 ~g~~~~l~~~  445 (467)
                      .|+++++...
T Consensus       237 ~~~~~~~~~~  246 (261)
T PRK14258        237 FGLTKKIFNS  246 (261)
T ss_pred             eCCHHHHHhC
Confidence            9999998753

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=4.2e-45  Score=333.73  Aligned_cols=171  Identities=43%  Similarity=0.740  Sum_probs=160.0

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY   80 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence            47899999997542358999999999999999999999999999999999999999999999999988777788889999


Q ss_pred             EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      ++|++.+|+.|+.||+                                         ||||||||++||||++.+|+++|
T Consensus        81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll  119 (171)
T cd03228          81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI  119 (171)
T ss_pred             EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999988999987                                         89999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          381 LDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      |||||++||+.+...+.+.+++..+++|+|++||+++.+..||++++|++|+
T Consensus       120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228         120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            9999999999999999999998866899999999999988899999999985

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=3e-45  Score=348.24  Aligned_cols=202  Identities=26%  Similarity=0.360  Sum_probs=173.6

Q ss_pred             EEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 044927          221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK---DLR  295 (467)
Q Consensus       221 i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r  295 (467)
                      ++++|+++.|+++  .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+..   ..+
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            7899999999642  14599999999999999999999999999999999999999999999999998766543   467


Q ss_pred             cccEEEcCCCcccc-ccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          296 TKLSIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      +.++|+||++.+|. .|+.||+.+..    ....    +++.++++.+++.+..++.|           .+||||||||+
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv  150 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV  150 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence            88999999999987 59999996421    1222    23555667777766665554           68999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGEL  433 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~i  433 (467)
                      +||||++++|+++||||||++||+.++..+.+.|++..  .++|+|++||+++....||+|++|++|++
T Consensus       151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            99999999999999999999999999999999998864  37999999999997777999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-44  Score=351.52  Aligned_cols=217  Identities=23%  Similarity=0.375  Sum_probs=180.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCCC--CHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--P---ENGRILIDGLDICSM--GLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~--p---~~G~i~i~g~~i~~~--~~~  292 (467)
                      .++++||+++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++...  +..
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14255          5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV   82 (252)
T ss_pred             eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence            5899999999964  359999999999999999999999999999999999975  5   589999999988642  344


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcC---CCC-CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPL---GMY-SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~---~~~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .+++.++|+||++.+|+.|+++|+.+.   ... .+    +++.+.++.+++...       +.........+|||||||
T Consensus        83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~q  155 (252)
T PRK14255         83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQQ  155 (252)
T ss_pred             HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHHH
Confidence            667889999999999989999999632   111 11    223344455444321       122334456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++.++.
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14255        156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF  235 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999999987667899999999999865 9999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      ..
T Consensus       236 ~~  237 (252)
T PRK14255        236 LN  237 (252)
T ss_pred             cC
Confidence            54

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.5e-45  Score=369.58  Aligned_cols=206  Identities=25%  Similarity=0.349  Sum_probs=175.5

Q ss_pred             eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcccEE
Q 044927          225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSI  300 (467)
Q Consensus       225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~i~~  300 (467)
                      |++++|++  . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+    ....++.++|
T Consensus         4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~   79 (354)
T TIGR02142         4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY   79 (354)
T ss_pred             EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence            89999963  2 35 999999999999999999999999999999999999999999999986532    2356778999


Q ss_pred             EcCCCccccc-cHHHhcCcCC-CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG-MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~-~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +||++.+|+. |++||+.+.. ...    .+++.+.++..++.+..++.           ..+||||||||++|||||+.
T Consensus        80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~~  148 (354)
T TIGR02142        80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALLS  148 (354)
T ss_pred             EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence            9999999975 9999997531 111    12355566666665555444           37899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +|++|||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (354)
T TIGR02142       149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS  222 (354)
T ss_pred             CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence            9999999999999999999999999998643  7899999999998865 999999999999999999998764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1e-44  Score=354.50  Aligned_cols=224  Identities=23%  Similarity=0.373  Sum_probs=181.6

Q ss_pred             cEEEEeEEEEeCCC-------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-
Q 044927          220 RIELEDLKVRYRPN-------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-  291 (467)
Q Consensus       220 ~i~~~~vs~~y~~~-------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-  291 (467)
                      .|+++||++.|++.       .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. 
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~   82 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA   82 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence            48999999999631       2469999999999999999999999999999999999999999999999999887654 


Q ss_pred             --HHHhcccEEEcCCCc--cc-cccHHHhcCcC----CCCCHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChh
Q 044927          292 --KDLRTKLSIIPQEPT--LF-RGSVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVG  361 (467)
Q Consensus       292 --~~~r~~i~~v~Q~~~--lf-~~tv~enl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgG  361 (467)
                        ..+++.++|+||++.  ++ ..|+.+|+.+.    ......+     ....+.+.+..+  |+++ ..+.....||||
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G  155 (268)
T PRK10419         83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGG  155 (268)
T ss_pred             HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence              346788999999983  44 35899997421    1111111     011123333332  3432 344566889999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~  438 (467)
                      ||||++|||||+.+|++|||||||++||+.++..+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus       156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~  235 (268)
T PRK10419        156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP  235 (268)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence            9999999999999999999999999999999999999998864  27899999999999875 99999999999999999


Q ss_pred             hhhHhccCchHH
Q 044927          439 PSKLMETNSAFS  450 (467)
Q Consensus       439 ~~~l~~~~~~~~  450 (467)
                      ++++.+....|.
T Consensus       236 ~~~~~~~~~~~~  247 (268)
T PRK10419        236 VGDKLTFSSPAG  247 (268)
T ss_pred             hhhccCCCCHHH
Confidence            999886555443

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=350.47  Aligned_cols=217  Identities=26%  Similarity=0.404  Sum_probs=181.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC------EeCCCCCHHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG------LDICSMGLKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g------~~i~~~~~~~  293 (467)
                      .++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|      .++...+...
T Consensus        10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~   87 (257)
T PRK14246         10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK   87 (257)
T ss_pred             heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence            5999999999964  4589999999999999999999999999999999999999997666665      5666666667


Q ss_pred             HhcccEEEcCCCccccc-cHHHhcCcCC---CC-CHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          294 LRTKLSIIPQEPTLFRG-SVRTNLDPLG---MY-SDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~-~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      +|+.++|+||++.+|.+ |+++|+.+..   .. .+++    +.++++..++.+.+       ....+..+..|||||||
T Consensus        88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q  160 (257)
T PRK14246         88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ  160 (257)
T ss_pred             HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence            88999999999999875 9999996421   11 2222    34455555553222       11233456789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus       161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~  240 (257)
T PRK14246        161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF  240 (257)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999999998766799999999999985 59999999999999999999987


Q ss_pred             cc
Q 044927          444 ET  445 (467)
Q Consensus       444 ~~  445 (467)
                      +.
T Consensus       241 ~~  242 (257)
T PRK14246        241 TS  242 (257)
T ss_pred             hC
Confidence            64

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=1.1e-44  Score=342.87  Aligned_cols=197  Identities=24%  Similarity=0.321  Sum_probs=165.1

Q ss_pred             eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcccEE
Q 044927          225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSI  300 (467)
Q Consensus       225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~i~~  300 (467)
                      ||+++|++.  .+  |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++....    ...+++.++|
T Consensus         5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~   79 (214)
T cd03297           5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL   79 (214)
T ss_pred             eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence            899999753  24  99999999 999999999999999999999999999999999999886432    2356788999


Q ss_pred             EcCCCcccc-ccHHHhcCcCC-CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG-MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~-~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +||++.+|. .|+++|+.+.. ...    ++++.+.++..++.+..           .....+||||||||++||||++.
T Consensus        80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~  148 (214)
T cd03297          80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALARALAA  148 (214)
T ss_pred             EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHHHHhc
Confidence            999999886 49999996421 111    22344555555554433           34457899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      +|+++||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999998863 3 7899999999999864 9999999999998865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=3.4e-44  Score=347.34  Aligned_cols=208  Identities=25%  Similarity=0.376  Sum_probs=178.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++  +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|           +..++
T Consensus         4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~   70 (251)
T PRK09544          4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG   70 (251)
T ss_pred             EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence            4899999999964  3599999999999999999999999999999999999999999999987           24699


Q ss_pred             EEcCCCcccc---ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          300 IIPQEPTLFR---GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       300 ~v~Q~~~lf~---~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      |+||++.++.   .|+.+|+.......++++.++++.+++.+..++.+           ..||||||||++||||++.+|
T Consensus        71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qrv~laral~~~p  139 (251)
T PRK09544         71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPM-----------QKLSGGETQRVLLARALLNRP  139 (251)
T ss_pred             EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCCh-----------hhCCHHHHHHHHHHHHHhcCC
Confidence            9999987764   37888875433344567788888888877665543           689999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927          377 RILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNSAFSKLV  453 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~  453 (467)
                      +++||||||++||+.++..+.+.|++.. + ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+ ...|.+++
T Consensus       140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~  217 (251)
T PRK09544        140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF  217 (251)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence            9999999999999999999999998864 3 7899999999999865 999999965 7999999999864 34444443

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-44  Score=352.57  Aligned_cols=209  Identities=22%  Similarity=0.332  Sum_probs=173.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ...++.++
T Consensus         6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~   81 (272)
T PRK15056          6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA   81 (272)
T ss_pred             eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence            58999999999633 459999999999999999999999999999999999999999999999998742   11234699


Q ss_pred             EEcCCCcc---ccccHHHhcCcCC--------CC---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          300 IIPQEPTL---FRGSVRTNLDPLG--------MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       300 ~v~Q~~~l---f~~tv~enl~~~~--------~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      |+||++.+   +..++++|+.+..        ..   .++.+.++++..++.+..++           ...+||||||||
T Consensus        82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr  150 (272)
T PRK15056         82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----------QIGELSGGQKKR  150 (272)
T ss_pred             EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHH
Confidence            99999865   3457888875310        01   12234556677777655433           336799999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus       151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~  229 (272)
T PRK15056        151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF  229 (272)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence            999999999999999999999999999999999998864 47999999999998764 9999777 89999999999986


Q ss_pred             c
Q 044927          444 E  444 (467)
Q Consensus       444 ~  444 (467)
                      .
T Consensus       230 ~  230 (272)
T PRK15056        230 T  230 (272)
T ss_pred             C
Confidence            4

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=8.6e-42  Score=355.90  Aligned_cols=409  Identities=20%  Similarity=0.196  Sum_probs=294.0

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLI---------------VAIPTVIVAKYIQGYYLSSAR   66 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l---------------i~~~~~~~~~~~~~~~~~~~~   66 (467)
                      .|+..|+..+-+........++.++++++.+.++++..+-.+++               +++..+++..++...+.+...
T Consensus       152 QRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li  231 (604)
T COG4178         152 QRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLI  231 (604)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccc
Confidence            47888998888777777788888888888888777744433211               111111222222333333333


Q ss_pred             HHHHHhccccccHHHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 044927           67 ELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLV---LRIEALQNLIILTAA  143 (467)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  143 (467)
                      .+.-...+..+.+...+.-.-++.+.|-.|+.|+...++.+..+....+.+.+.......+.   .....+.. +.....
T Consensus       232 ~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~li  310 (604)
T COG4178         232 RLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLPILI  310 (604)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHHh
Confidence            33322233344555566677788899999999998877776666655554433333322222   11111111 111111


Q ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCccCCCCCCCCCC
Q 044927          144 LLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL------PPEPPAIIEETKPPASWPS  217 (467)
Q Consensus       144 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~------~~~~~~~~~~~~~~~~~~~  217 (467)
                      ..-.+..|.++.|.+......+..+...+.++...+..+....+...|+.++.+.      +++.+.... .........
T Consensus       311 ~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~  389 (604)
T COG4178         311 AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNA  389 (604)
T ss_pred             ccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccc
Confidence            1112455889999887777777778888888889999999999999999998742      111111000 000000001


Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      ...|+++|++..-+++. ..++++||++++||.+-|.||||||||||+|+|+|++|..+|+|.+-.           -..
T Consensus       390 ~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~  457 (604)
T COG4178         390 DHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSA  457 (604)
T ss_pred             cceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCc
Confidence            35799999999998655 689999999999999999999999999999999999999999987641           125


Q ss_pred             cEEEcCCCccccccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +-|+||.|++..||.||-+++..   .++++++.+++.+|+|.++++++.+- +    +-...||+|||||+++||.+++
T Consensus       458 ~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~----~W~~vLS~GEqQRlafARilL~  532 (604)
T COG4178         458 LLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-D----RWDRVLSGGEQQRLAFARLLLH  532 (604)
T ss_pred             eEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-C----cHhhhcChhHHHHHHHHHHHHc
Confidence            78999999999999999997532   37899999999999999999997532 2    2346799999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEe
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS  429 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~  429 (467)
                      +|++++|||+||+||++++..+++.+++..++.|+|.|+||.......++.+-+.
T Consensus       533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence            9999999999999999999999999999889999999999998887766655554

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.7e-44  Score=371.77  Aligned_cols=223  Identities=27%  Similarity=0.455  Sum_probs=186.7

Q ss_pred             ccEEEEeEEEEeCCC---------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe--CC
Q 044927          219 GRIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--IC  287 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~---------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~--i~  287 (467)
                      .-++++|++++|...         ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+  ++
T Consensus       279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~  358 (539)
T COG1123         279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT  358 (539)
T ss_pred             ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence            358899999999731         2358999999999999999999999999999999999999999999999987  22


Q ss_pred             CCCHHHHhcccEEEcCCCcc---ccccHHHhcCc-C---CCCC----HHHHHHHHHHcChHH-HHHhCCCcccccccCCC
Q 044927          288 SMGLKDLRTKLSIIPQEPTL---FRGSVRTNLDP-L---GMYS----DNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEG  355 (467)
Q Consensus       288 ~~~~~~~r~~i~~v~Q~~~l---f~~tv~enl~~-~---~~~~----~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g  355 (467)
                      .-+....|+++-+|+|||+-   ...||.++|.- .   ....    .+.+.+.++.+++.. +..+.|           
T Consensus       359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----------  427 (539)
T COG1123         359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----------  427 (539)
T ss_pred             cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------
Confidence            22344578899999999974   35699999851 1   1111    234666788888875 566665           


Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      .+||||||||+||||||+.+|+++|+|||||+||+.++..+.+.|+++.+  |.|.|+||||++.++. ||||+||++|+
T Consensus       428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~  507 (539)
T COG1123         428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR  507 (539)
T ss_pred             hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence            78999999999999999999999999999999999999999999998643  7999999999999997 99999999999


Q ss_pred             EEEecChhhHhcc-CchHHHH
Q 044927          433 LVEYDLPSKLMET-NSAFSKL  452 (467)
Q Consensus       433 iv~~g~~~~l~~~-~~~~~~l  452 (467)
                      |||.|+.+++++. ...|.+.
T Consensus       508 iVE~G~~~~v~~~p~h~Ytr~  528 (539)
T COG1123         508 IVEEGPTEKVFENPQHPYTRK  528 (539)
T ss_pred             EEEeCCHHHHhcCCCChHHHH
Confidence            9999999999874 4445443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=2.2e-44  Score=331.18  Aligned_cols=172  Identities=33%  Similarity=0.522  Sum_probs=157.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHhccc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG--LKDLRTKL  298 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~i  298 (467)
                      ++++|++++|++  +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+  ...+++.+
T Consensus         1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   78 (178)
T cd03229           1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI   78 (178)
T ss_pred             CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence            478999999964  35999999999999999999999999999999999999999999999999988775  56678899


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      +|++|++.+|.. |++||+.+.                                      ||||||||++|||||+++|+
T Consensus        79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~  120 (178)
T cd03229          79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD  120 (178)
T ss_pred             EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence            999999998864 999998642                                      89999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          378 ILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      ++||||||++||+.++..+.+.|++..+  ++|+|++||+++.+.. ||++++|++|+
T Consensus       121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            9999999999999999999999988643  6899999999999984 99999999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1.9e-44  Score=330.07  Aligned_cols=170  Identities=31%  Similarity=0.558  Sum_probs=156.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   77 (173)
T cd03230           1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY   77 (173)
T ss_pred             CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence            468999999964  35999999999999999999999999999999999999999999999999987655 567889999


Q ss_pred             EcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          301 IPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      +||++.+|.+ |+.||+.                                        |||||+||++|||||+.+|+++
T Consensus        78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il  117 (173)
T cd03230          78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL  117 (173)
T ss_pred             EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence            9999998876 9999973                                        8999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEE
Q 044927          380 VLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGEL  433 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~i  433 (467)
                      ||||||++||+.+...+.+.|++.. ++.|+|++||+++.+. .||++++|++|++
T Consensus       118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            9999999999999999999999864 4789999999999888 4999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=4.5e-44  Score=347.29  Aligned_cols=216  Identities=24%  Similarity=0.393  Sum_probs=174.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-----CCCCCHHH-
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-----ICSMGLKD-  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~-----i~~~~~~~-  293 (467)
                      .++++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +...+..+ 
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (253)
T TIGR02323         3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER   80 (253)
T ss_pred             eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence            4899999999964  348999999999999999999999999999999999999999999999987     66665543 


Q ss_pred             ---HhcccEEEcCCCc--cc-cccHHHhcCc----CCCCCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhH
Q 044927          294 ---LRTKLSIIPQEPT--LF-RGSVRTNLDP----LGMYSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQ  362 (467)
Q Consensus       294 ---~r~~i~~v~Q~~~--lf-~~tv~enl~~----~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq  362 (467)
                         +++.++|++|++.  ++ ..|+.+|+..    .......+..     ..+.++++.+.  ++ +........|||||
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~l~--l~~~~~~~~~~~LSgG~  153 (253)
T TIGR02323        81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----AAAHDWLEEVE--IDPTRIDDLPRAFSGGM  153 (253)
T ss_pred             HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHcC--CChhhhhcCchhcCHHH
Confidence               2467999999985  22 3478888732    1111111110     12234444442  32 34455668899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      |||++|||||+.+|++|||||||++||+.+.+.+.+.|++..  .+.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus       154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~  233 (253)
T TIGR02323       154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT  233 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999998853  37999999999999885 999999999999999999


Q ss_pred             hhHhc
Q 044927          440 SKLME  444 (467)
Q Consensus       440 ~~l~~  444 (467)
                      +++..
T Consensus       234 ~~~~~  238 (253)
T TIGR02323       234 DQVLD  238 (253)
T ss_pred             HHHhc
Confidence            99875

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-42  Score=337.23  Aligned_cols=417  Identities=20%  Similarity=0.227  Sum_probs=290.3

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +.++++|+.++. +-...++.++++.+.++++.+.++++||++.+++++.+++..+.....+.+..+......+...++.
T Consensus       108 la~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq  186 (546)
T COG4615         108 LAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQ  186 (546)
T ss_pred             hhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            367899999998 4455677899999999999999999999998887766666555433333333333333344556788


Q ss_pred             HHHHHHHchHHHHHHccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFF--ENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPG  156 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g  156 (467)
                      +..+..+.|.++++...--.+..  +.+....+...+   +....+.....-....+.+...+++..  +....+.-+..
T Consensus       187 ~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~---~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~  263 (546)
T COG4615         187 NDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH---HIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTN  263 (546)
T ss_pred             HHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence            89999999999999876443322  222211111111   111111110000011111111111111  11122333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCc
Q 044927          157 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPL  236 (467)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~  236 (467)
                      ....++.....+..|+..+......+..+.++.+|+.++-..|+.. ....    +...|.-..++++||.|.|.++. .
T Consensus       264 ~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a-~~~~----~q~~p~~~~lelrnvrfay~~~~-F  337 (546)
T COG4615         264 VAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA-DFPR----PQAFPDWKTLELRNVRFAYQDNA-F  337 (546)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc-cCCC----CCcCCcccceeeeeeeeccCccc-c
Confidence            3333333344566788888888888999999999999875432211 1111    11112234699999999997654 3


Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL  316 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl  316 (467)
                      -+..||++|++||++-|+|.|||||||+++++.|+|.|++|+|++||.+++.-+++++|+-++-|+-|.+||+.++    
T Consensus       338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----  413 (546)
T COG4615         338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----  413 (546)
T ss_pred             eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999998653    


Q ss_pred             CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      .+-+.++.+.+...+++..+.+...-. +|--     .-..||.|||+|+++--|++-+.||+++||=-+--||.-++.+
T Consensus       414 ~~e~~as~q~i~~~LqrLel~~ktsl~-d~~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~F  487 (546)
T COG4615         414 GPEGKASPQLIEKWLQRLELAHKTSLN-DGRF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREF  487 (546)
T ss_pred             CCccCCChHHHHHHHHHHHHhhhhccc-CCcc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHH
Confidence            111235666666666665554433221 1110     0157899999999999999999999999999999999999988


Q ss_pred             HHHHHHH--CCCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927          397 QRIIREE--FPGSTVITVAHRVPTITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       397 ~~~l~~~--~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g  437 (467)
                      .+.+-..  ..||||+.||||-.....|||++.|++|+++|.-
T Consensus       488 Y~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         488 YQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             HHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence            8877553  3599999999999999999999999999999864

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=2.2e-44  Score=343.70  Aligned_cols=203  Identities=24%  Similarity=0.333  Sum_probs=167.9

Q ss_pred             EEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHHh
Q 044927          221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDLR  295 (467)
Q Consensus       221 i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r  295 (467)
                      +.++||+++|++.  .+++++|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|.++.   ...+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~   80 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ   80 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence            5799999999765  2569999999999999999999999999999999999999   99999999999875   34678


Q ss_pred             cccEEEcCCCccccc-cHHHhcCcCCC----C-CHHH-----HHH-HHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          296 TKLSIIPQEPTLFRG-SVRTNLDPLGM----Y-SDNE-----IWE-AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~-tv~enl~~~~~----~-~~~~-----~~~-~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      +.++|+||++.+|++ |++||+.+...    . ..+.     +.+ .++..+           +..........|||||+
T Consensus        81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~  149 (226)
T cd03234          81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----------LTRIGGNLVKGISGGER  149 (226)
T ss_pred             ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhc-----------chhhhcccccCcCHHHH
Confidence            889999999999987 99999964210    0 0111     111 222222           22233345578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccCh-hHH-hhcCEEEEEeCCEEEEec
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRV-PTI-TDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l-~~~-~~~d~i~vl~~G~iv~~g  437 (467)
                      ||++|||||+++|+++||||||++||+.+...+.+.+++.. +++|+|++||++ +.+ +.||++++|++|++++.|
T Consensus       150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999999999999999999999999998864 478999999998 455 459999999999999865

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-44  Score=326.28  Aligned_cols=212  Identities=25%  Similarity=0.394  Sum_probs=186.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+.+|+|++-.+  +.+|+++||++++||..||+||||||||||+|.|+|...|++|++.++|.+++.+++.++.++-++
T Consensus         2 i~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV   79 (259)
T COG4559           2 IRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV   79 (259)
T ss_pred             eeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence            788999998854  348999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCcc-ccccHHHhcCcCC-------CCCHHH--HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          301 IPQEPTL-FRGSVRTNLDPLG-------MYSDNE--IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       301 v~Q~~~l-f~~tv~enl~~~~-------~~~~~~--~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      +||+..+ |+-|++|-+.++.       ...+++  ..+++.++++..+..+.           -..|||||||||.+||
T Consensus        80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR  148 (259)
T COG4559          80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR  148 (259)
T ss_pred             cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence            9999887 8899999986542       111333  56788888887776553           2679999999999999


Q ss_pred             HhcC------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927          371 VLLK------RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       371 al~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      +|++      ++++|+||||||+||...+..+++..+++. .|..|+.|-||++... +||||++|++||+++.|+|++.
T Consensus       149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v  228 (259)
T COG4559         149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV  228 (259)
T ss_pred             HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence            9985      346999999999999999999999999864 5899999999999765 5999999999999999999999


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      +..
T Consensus       229 lt~  231 (259)
T COG4559         229 LTD  231 (259)
T ss_pred             cCH
Confidence            864

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-44  Score=346.99  Aligned_cols=223  Identities=25%  Similarity=0.454  Sum_probs=182.5

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-C----CccEEEEcCEeCCCCCHHH
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-P----ENGRILIDGLDICSMGLKD  293 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p----~~G~i~i~g~~i~~~~~~~  293 (467)
                      ++++|++..|....  ..+++||||++++||++||||+|||||||+.++|+|+++ |    .+|+|.++|.|+..++.++
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            68999999996432  358999999999999999999999999999999999998 4    5799999999999998775


Q ss_pred             H---h-cccEEEcCCCcc-cc--ccHHHhc----CcCCCC-C----HHHHHHHHHHcChHH---HHHhCCCcccccccCC
Q 044927          294 L---R-TKLSIIPQEPTL-FR--GSVRTNL----DPLGMY-S----DNEIWEAMEKCQLKA---TISRLPMLLDSSVSDE  354 (467)
Q Consensus       294 ~---r-~~i~~v~Q~~~l-f~--~tv~enl----~~~~~~-~----~~~~~~~~~~~~l~~---~i~~l~~g~~t~v~~~  354 (467)
                      +   | +.|++|||+|.- ++  .||.+-+    ...... +    .++..+.++.+++.+   .++..|          
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP----------  151 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP----------  151 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence            3   3 479999999852 22  2555444    211111 1    235667788888764   344555          


Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927          355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYG  431 (467)
Q Consensus       355 g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G  431 (467)
                       .+||||||||+.||-||+.+|++||-||||+|||...+.+|.+.|+++.  .|.|+|+||||+..+.. ||||+||.+|
T Consensus       152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG  230 (316)
T COG0444         152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG  230 (316)
T ss_pred             -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence             7899999999999999999999999999999999999999999999865  48999999999998775 9999999999


Q ss_pred             EEEEecChhhHhcc--CchHHHHHH
Q 044927          432 ELVEYDLPSKLMET--NSAFSKLVA  454 (467)
Q Consensus       432 ~iv~~g~~~~l~~~--~~~~~~l~~  454 (467)
                      +|||.|+.+++++.  +..-+.|++
T Consensus       231 ~iVE~g~~~~i~~~P~HPYT~~Ll~  255 (316)
T COG0444         231 RIVEEGPVEEIFKNPKHPYTRGLLN  255 (316)
T ss_pred             EEEEeCCHHHHhcCCCChHHHHHHH
Confidence            99999999999973  333344443

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=3.7e-44  Score=336.27  Aligned_cols=190  Identities=24%  Similarity=0.295  Sum_probs=160.8

Q ss_pred             cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHH
Q 044927          220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDL  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~  294 (467)
                      .+.++||+|.|+..  .+.+|+|+||++++||+++|+||||||||||+++|+|+++   |++|+|.++|.++...+ ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~   81 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY   81 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence            37899999999743  4569999999999999999999999999999999999999   89999999999987654 356


Q ss_pred             hcccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          295 RTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      ++.++|++|++.+|.. |++||+.+....         .                  ..+....||||||||++|||||+
T Consensus        82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------------~~~~~~~LS~Ge~qrl~laral~  134 (202)
T cd03233          82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K------------------GNEFVRGISGGERKRVSIAEALV  134 (202)
T ss_pred             cceEEEEecccccCCCCcHHHHHhhhhhh---------c------------------cccchhhCCHHHHHHHHHHHHHh
Confidence            7789999999988864 999999642100         0                  12334679999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEc-cChhHHh-hcCEEEEEeCCEEEEec
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVA-HRVPTIT-DSDMFMVLSYGELVEYD  437 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~l~~~~-~~d~i~vl~~G~iv~~g  437 (467)
                      .+|+++||||||++||+.+++.+.+.+++..+  +.|+|+++ |+++.+. .||++++|++|++++.|
T Consensus       135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            99999999999999999999999999998643  56666655 5566665 59999999999998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=2.3e-44  Score=338.54  Aligned_cols=193  Identities=26%  Similarity=0.377  Sum_probs=163.0

Q ss_pred             EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhccc
Q 044927          223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRTKL  298 (467)
Q Consensus       223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~i  298 (467)
                      ++||++.|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.    ...++.+
T Consensus         1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   78 (206)
T TIGR03608         1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL   78 (206)
T ss_pred             CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence            4789999963  359999999999999999999999999999999999999999999999999764432    2356789


Q ss_pred             EEEcCCCcccc-ccHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFR-GSVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      +|++|++.+|. .|++||+.+..   ...    .+++.++++..++.+..++           ...+||||||||++|||
T Consensus        79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~lar  147 (206)
T TIGR03608        79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALAR  147 (206)
T ss_pred             eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence            99999999987 59999996421   111    2345566677666554433           34679999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl  428 (467)
                      ||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||++++|
T Consensus       148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence            9999999999999999999999999999998864 479999999999988789999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=6.7e-44  Score=378.94  Aligned_cols=212  Identities=26%  Similarity=0.384  Sum_probs=181.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-ccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r-~~i  298 (467)
                      .++++|++++|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.+
T Consensus        11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   88 (510)
T PRK15439         11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI   88 (510)
T ss_pred             eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence            5999999999964  3599999999999999999999999999999999999999999999999999877766554 569


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCCCC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGMYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +|+||++.+|.. |++||+.+.....   .+++.++++..++.+.           ......+||||||||++|||||+.
T Consensus        89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~~  157 (510)
T PRK15439         89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLMR  157 (510)
T ss_pred             EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHHc
Confidence            999999988865 9999997532111   2344455555555332           233447899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (510)
T PRK15439        158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST  229 (510)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence            999999999999999999999999998863 47999999999998865 99999999999999999988754

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=3.8e-44  Score=330.16  Aligned_cols=177  Identities=34%  Similarity=0.527  Sum_probs=158.9

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII  301 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v  301 (467)
                      +++||+++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus         1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~   78 (180)
T cd03214           1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV   78 (180)
T ss_pred             CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence            47899999964  3599999999999999999999999999999999999999999999999999888877888889999


Q ss_pred             cCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEe
Q 044927          302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL  381 (467)
Q Consensus       302 ~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliL  381 (467)
                      ||                          +++.+++.++..+.           ..+||||||||++||||++++|+++||
T Consensus        79 ~q--------------------------~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~llll  121 (180)
T cd03214          79 PQ--------------------------ALELLGLAHLADRP-----------FNELSGGERQRVLLARALAQEPPILLL  121 (180)
T ss_pred             HH--------------------------HHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99                          55666666655433           368999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEec
Q 044927          382 DEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYD  437 (467)
Q Consensus       382 DEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g  437 (467)
                      ||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+. .||++++|++|++++.|
T Consensus       122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            999999999999999999988644  789999999999985 59999999999998654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=8.8e-44  Score=344.99  Aligned_cols=211  Identities=19%  Similarity=0.248  Sum_probs=174.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHHhc-
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDLRT-  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~-  296 (467)
                      .++++||++.|++  +.+|+|+||++++||++||+||||||||||+++|+|+  ++|++|+|+++|.++...+....++ 
T Consensus         7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   84 (252)
T CHL00131          7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL   84 (252)
T ss_pred             eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence            4999999999964  3599999999999999999999999999999999998  6899999999999998877665554 


Q ss_pred             ccEEEcCCCccccc-cHHHhcCcCCC----------CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCC-CCCh
Q 044927          297 KLSIIPQEPTLFRG-SVRTNLDPLGM----------YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE-NWSV  360 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~-tv~enl~~~~~----------~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~-~LSg  360 (467)
                      .++|++|++.+|++ |+.+|+.+...          ..    .+++.++++.+++.+          +..+.... .|||
T Consensus        85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg  154 (252)
T CHL00131         85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG  154 (252)
T ss_pred             eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence            48999999998876 88888753110          01    112334455555431          11222233 5999


Q ss_pred             hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEec
Q 044927          361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYD  437 (467)
Q Consensus       361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g  437 (467)
                      |||||++|||||+++|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+..  ||++++|++|++++.|
T Consensus       155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~  234 (252)
T CHL00131        155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG  234 (252)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence            99999999999999999999999999999999999999998864 48999999999998875  8999999999999999


Q ss_pred             ChhhH
Q 044927          438 LPSKL  442 (467)
Q Consensus       438 ~~~~l  442 (467)
                      +++.+
T Consensus       235 ~~~~~  239 (252)
T CHL00131        235 DAELA  239 (252)
T ss_pred             Chhhh
Confidence            98743

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=7.9e-44  Score=333.53  Aligned_cols=185  Identities=26%  Similarity=0.384  Sum_probs=162.2

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~-r~~  297 (467)
                      ++++|++++|++  +++++|+||++++||+++|+||||||||||+++|+|+  ++|++|+|.+||.++.+.+.... |..
T Consensus         1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~   78 (200)
T cd03217           1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG   78 (200)
T ss_pred             CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence            478999999963  3599999999999999999999999999999999999  58999999999999988776554 556


Q ss_pred             cEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      ++|+||++.+|++ ++++|+                        ...           ..+||||||||++||||++++|
T Consensus        79 i~~v~q~~~~~~~~~~~~~l------------------------~~~-----------~~~LS~G~~qrv~laral~~~p  123 (200)
T cd03217          79 IFLAFQYPPEIPGVKNADFL------------------------RYV-----------NEGFSGGEKKRNEILQLLLLEP  123 (200)
T ss_pred             EEEeecChhhccCccHHHHH------------------------hhc-----------cccCCHHHHHHHHHHHHHhcCC
Confidence            9999999998876 555554                        011           1479999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh--hcCEEEEEeCCEEEEecChhhHh
Q 044927          377 RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT--DSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~--~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.  .||++++|++|++++.| +.|+.
T Consensus       124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~  192 (200)
T cd03217         124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA  192 (200)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence            9999999999999999999999999864 4789999999999988  69999999999999999 44453

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=4.8e-44  Score=333.35  Aligned_cols=182  Identities=25%  Similarity=0.414  Sum_probs=160.3

Q ss_pred             cEEEEeEEEEeCCC----CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHH
Q 044927          220 RIELEDLKVRYRPN----TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~----~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~g~~i~~~~~~~  293 (467)
                      .++++||+|+|++.    .+++++|+||++++||+++|+||||||||||+++|+|++  +|++|+|.++|+++..   ..
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~   79 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS   79 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence            48999999999742    245999999999999999999999999999999999999  9999999999998864   35


Q ss_pred             HhcccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          294 LRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +++.++|+||++.+|.. |++||+.+..     .    +                        ..||||||||++|||||
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-----~----~------------------------~~LS~G~~qrv~laral  126 (194)
T cd03213          80 FRKIIGYVPQDDILHPTLTVRETLMFAA-----K----L------------------------RGLSGGERKRVSIALEL  126 (194)
T ss_pred             hhheEEEccCcccCCCCCcHHHHHHHHH-----H----h------------------------ccCCHHHHHHHHHHHHH
Confidence            67889999999988864 9999984210     0    0                        06999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChh-HHh-hcCEEEEEeCCEEEEec
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVP-TIT-DSDMFMVLSYGELVEYD  437 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~-~~d~i~vl~~G~iv~~g  437 (467)
                      +.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus       127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            99999999999999999999999999999864 4899999999996 454 59999999999998754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=1.4e-43  Score=342.86  Aligned_cols=205  Identities=23%  Similarity=0.323  Sum_probs=172.8

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII  301 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v  301 (467)
                      +++||++.     . +|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|.++...+...+++.++|+
T Consensus         2 ~~~~l~~~-----~-~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v   74 (248)
T PRK03695          2 QLNDVAVS-----T-RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL   74 (248)
T ss_pred             cccccchh-----c-eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence            46777774     1 79999999999999999999999999999999999965 99999999999888877888889999


Q ss_pred             cCCCccc-cccHHHhcCcCCC--CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          302 PQEPTLF-RGSVRTNLDPLGM--YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       302 ~Q~~~lf-~~tv~enl~~~~~--~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      ||++.++ ..|+++|+.+...  ..    .+++.++++..++.+..+           .....||||||||++|||||+.
T Consensus        75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~  143 (248)
T PRK03695         75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVLQ  143 (248)
T ss_pred             cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhc
Confidence            9998654 5799999975321  11    123445556655544333           3447899999999999999997


Q ss_pred             -------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927          375 -------RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       375 -------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                             +|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus       144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  222 (248)
T PRK03695        144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT  222 (248)
T ss_pred             cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence                   679999999999999999999999998864 4799999999999775 499999999999999999998864

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=6.9e-44  Score=378.31  Aligned_cols=211  Identities=22%  Similarity=0.331  Sum_probs=176.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i  298 (467)
                      .|+++|++++|++  .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   81 (501)
T PRK10762          4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI   81 (501)
T ss_pred             eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            4899999999963  35999999999999999999999999999999999999999999999999987655444 35689


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCC-------CCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGM-------YSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~-------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      +|+||++.+|.. |++||+.+...       .+..    ++.++++..++           .........+||||||||+
T Consensus        82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv  150 (501)
T PRK10762         82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL-----------RFSSDKLVGELSIGEQQMV  150 (501)
T ss_pred             EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC-----------CCCccCchhhCCHHHHHHH
Confidence            999999988865 99999965311       1111    22333333333           2223344578999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +|||||+.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (501)
T PRK10762        151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT  229 (501)
T ss_pred             HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence            99999999999999999999999999999999998863 47899999999998875 9999999999999999988764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.4e-44  Score=378.08  Aligned_cols=211  Identities=25%  Similarity=0.391  Sum_probs=177.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHH-Hhc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~-~r~  296 (467)
                      .++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|  ++|+|.++|.++...+..+ .|+
T Consensus         5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (506)
T PRK13549          5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA   82 (506)
T ss_pred             eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence            4899999999963  3599999999999999999999999999999999999996  8999999999998766554 467


Q ss_pred             ccEEEcCCCccccc-cHHHhcCcCCC------CCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          297 KLSIIPQEPTLFRG-SVRTNLDPLGM------YSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      .++||||++.+|.. |++||+.+...      .+.+    ++.++++..+           ++........+||||||||
T Consensus        83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqr  151 (506)
T PRK13549         83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLK-----------LDINPATPVGNLGLGQQQL  151 (506)
T ss_pred             CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcC-----------CCCCcccchhhCCHHHHHH
Confidence            89999999988865 99999964321      1211    2233333333           3333344557899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  231 (506)
T PRK13549        152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT  231 (506)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence            999999999999999999999999999999999998863 47899999999999875 9999999999999999988874

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-44  Score=379.59  Aligned_cols=211  Identities=21%  Similarity=0.331  Sum_probs=177.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i  298 (467)
                      .++++|++++|++  +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus         5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i   82 (510)
T PRK09700          5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI   82 (510)
T ss_pred             eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence            4899999999963  35999999999999999999999999999999999999999999999999998777654 34679


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCC-----C-----CH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGM-----Y-----SD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~-----~-----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      +||||++.+|.. |++||+.+...     .     +.    +++.++++..++           .........+||||||
T Consensus        83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~  151 (510)
T PRK09700         83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-----------KVDLDEKVANLSISHK  151 (510)
T ss_pred             EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHHH
Confidence            999999988865 99999964211     0     11    122333333333           2233444578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~  441 (467)
                      ||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus       152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  231 (510)
T PRK09700        152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD  231 (510)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence            99999999999999999999999999999999999998863 47999999999999875 99999999999999999988


Q ss_pred             Hh
Q 044927          442 LM  443 (467)
Q Consensus       442 l~  443 (467)
                      +.
T Consensus       232 ~~  233 (510)
T PRK09700        232 VS  233 (510)
T ss_pred             CC
Confidence            75

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-43  Score=383.35  Aligned_cols=215  Identities=24%  Similarity=0.406  Sum_probs=181.9

Q ss_pred             cEEEEeEEEEeCCC---------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 044927          220 RIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG  290 (467)
Q Consensus       220 ~i~~~~vs~~y~~~---------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~  290 (467)
                      .++++||++.|+..         ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~  392 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS  392 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence            59999999999621         135899999999999999999999999999999999999999999999999998765


Q ss_pred             HH---HHhcccEEEcCCCc--ccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChH-HHHHhCCCcccccccCCC
Q 044927          291 LK---DLRTKLSIIPQEPT--LFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLK-ATISRLPMLLDSSVSDEG  355 (467)
Q Consensus       291 ~~---~~r~~i~~v~Q~~~--lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g  355 (467)
                      ..   .+|++|+||||++.  +++ .|+.+|+...    .....    +++.+.++.+++. +..++.|           
T Consensus       393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----------  461 (623)
T PRK10261        393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP-----------  461 (623)
T ss_pred             HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------
Confidence            43   35778999999983  665 4999998531    11111    3455667777763 4444444           


Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      .+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.  .+.|+|+|||+++.+.. ||||++|++|+
T Consensus       462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~  541 (623)
T PRK10261        462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ  541 (623)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            6899999999999999999999999999999999999999999998863  37899999999999876 99999999999


Q ss_pred             EEEecChhhHhcc
Q 044927          433 LVEYDLPSKLMET  445 (467)
Q Consensus       433 iv~~g~~~~l~~~  445 (467)
                      |++.|+++++...
T Consensus       542 iv~~g~~~~i~~~  554 (623)
T PRK10261        542 IVEIGPRRAVFEN  554 (623)
T ss_pred             EEEecCHHHHhcC
Confidence            9999999999753

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=8.3e-44  Score=328.48  Aligned_cols=172  Identities=28%  Similarity=0.490  Sum_probs=155.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i  298 (467)
                      .++++|++++|      +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++++
T Consensus         4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (182)
T cd03215           4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI   77 (182)
T ss_pred             EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence            48999999998      7999999999999999999999999999999999999999999999999988764 4567889


Q ss_pred             EEEcCCC---ccc-cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          299 SIIPQEP---TLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       299 ~~v~Q~~---~lf-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +|+||++   .++ ..|++||+.+...                                    ||||||||++||||+++
T Consensus        78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~  121 (182)
T cd03215          78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR  121 (182)
T ss_pred             EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence            9999995   344 4699999863210                                    89999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      +|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus       122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            999999999999999999999999999864 47999999999998876 999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=7e-44  Score=331.74  Aligned_cols=181  Identities=25%  Similarity=0.373  Sum_probs=158.9

Q ss_pred             cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHHh
Q 044927          220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDLR  295 (467)
Q Consensus       220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r  295 (467)
                      .++++|+++.|++.  .+++|+|+||++++||+++|+||||||||||+++|+|++  +|++|+|.++|.++.    ..++
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~   78 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ   78 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence            48999999999642  245999999999999999999999999999999999986  489999999999875    4567


Q ss_pred             cccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          296 TKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      ++++|++|++.+|.. |++||+.+..         .++                        +||||||||++||||++.
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~------------------------~LSgGe~qrv~la~al~~  125 (192)
T cd03232          79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR------------------------GLSVEQRKRLTIGVELAA  125 (192)
T ss_pred             hceEEecccCccccCCcHHHHHHHHH---------HHh------------------------cCCHHHhHHHHHHHHHhc
Confidence            889999999988875 9999986310         000                        699999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH-H-hhcCEEEEEeC-CEEEEec
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT-I-TDSDMFMVLSY-GELVEYD  437 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~-G~iv~~g  437 (467)
                      +|+++||||||++||+.+...+.+.+++.. +++|+|++||+++. + ..||++++|++ |++++.|
T Consensus       126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            999999999999999999999999999864 47999999999984 4 56999999999 9999865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.9e-43  Score=321.16  Aligned_cols=164  Identities=32%  Similarity=0.440  Sum_probs=149.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.           ++++|
T Consensus         1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~   68 (166)
T cd03223           1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF   68 (166)
T ss_pred             CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence            4789999999643 45999999999999999999999999999999999999999999999873           57999


Q ss_pred             EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      ++|++.+++.|++||+.+.                                  ....||||||||++||||++++|+++|
T Consensus        69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll  114 (166)
T cd03223          69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF  114 (166)
T ss_pred             ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            9999998888999999642                                  136899999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          381 LDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      |||||++||+.+.+.+.+.+++.  ++|+|++||+++....||++++|++|-
T Consensus       115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~  164 (166)
T cd03223         115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG  164 (166)
T ss_pred             EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence            99999999999999999999886  589999999998877899999998863

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=5.2e-43  Score=338.73  Aligned_cols=210  Identities=20%  Similarity=0.244  Sum_probs=166.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHHh-cc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILIDGLDICSMGLKDLR-TK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r-~~  297 (467)
                      ++++|++++|++  +++|+|+||+|++|++++|+||||||||||+++|+|++  +|++|+|.++|.++...+....+ ..
T Consensus         2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (248)
T PRK09580          2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG   79 (248)
T ss_pred             eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence            789999999964  35999999999999999999999999999999999994  69999999999998877765554 57


Q ss_pred             cEEEcCCCccccc-cHHHhcCc-------CCC---CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCC-CCCChh
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDP-------LGM---YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEG-ENWSVG  361 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~-------~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g-~~LSgG  361 (467)
                      ++|++|++.++.. |..+++..       ...   ...    +.+.+.++..+       +|.++.+.   .. ..||||
T Consensus        80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~---~~~~~LS~G  149 (248)
T PRK09580         80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLTR---SVNVGFSGG  149 (248)
T ss_pred             eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhccc---CCCCCCCHH
Confidence            9999999987654 44443321       100   000    11112222222       22222221   12 379999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEecC
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g~  438 (467)
                      ||||++||||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..  ||++++|++|++++.|+
T Consensus       150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~  229 (248)
T PRK09580        150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD  229 (248)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence            9999999999999999999999999999999999999998864 37899999999999886  89999999999999999


Q ss_pred             hhhH
Q 044927          439 PSKL  442 (467)
Q Consensus       439 ~~~l  442 (467)
                      ++.+
T Consensus       230 ~~~~  233 (248)
T PRK09580        230 FTLV  233 (248)
T ss_pred             HHHH
Confidence            8854

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.6e-43  Score=339.88  Aligned_cols=191  Identities=26%  Similarity=0.370  Sum_probs=157.3

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc-CCCcccc-ccH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLFR-GSV  312 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf~-~tv  312 (467)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+|. .|+
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv  112 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence            3599999999999999999999999999999999999999999999999986543 345678899998 5566764 599


Q ss_pred             HHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCC
Q 044927          313 RTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT  385 (467)
Q Consensus       313 ~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpt  385 (467)
                      +||+.+..   ....++    +.++++..++.+..+           .....||||||||++|||||+.+|++|||||||
T Consensus       113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  181 (236)
T cd03267         113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-----------TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT  181 (236)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            99985321   122222    333444445443332           234679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          386 ASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       386 s~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      ++||+.+.+.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999999999999864  37899999999998765 9999999999998765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=3.4e-43  Score=329.53  Aligned_cols=194  Identities=26%  Similarity=0.347  Sum_probs=166.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus         1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   77 (201)
T cd03231           1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY   77 (201)
T ss_pred             CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence            478999999964  35899999999999999999999999999999999999999999999999876543 467889999


Q ss_pred             EcCCCccc-cccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          301 IPQEPTLF-RGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       301 v~Q~~~lf-~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      +||++.++ ..|++||+.+.. ...++++.++++..++.++.++.           ..+||||||||++||||++++|++
T Consensus        78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~l  146 (201)
T cd03231          78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP-----------VAQLSAGQQRRVALARLLLSGRPL  146 (201)
T ss_pred             eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCc-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99999876 469999996532 23456677788888887554332           367999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEE
Q 044927          379 LVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVL  428 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl  428 (467)
                      +||||||++||+.+++.+.+.|++.. +++|+|++||+...+. .||+++++
T Consensus       147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            99999999999999999999998754 4799999999877655 58999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=2.7e-43  Score=373.00  Aligned_cols=211  Identities=19%  Similarity=0.215  Sum_probs=181.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~   80 (490)
T PRK10938          3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS   80 (490)
T ss_pred             eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence            3899999999964  34999999999999999999999999999999999999999999999998887666667777899


Q ss_pred             EEcCCCcc--c-------cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          300 IIPQEPTL--F-------RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       300 ~v~Q~~~l--f-------~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |++|++.+  +       ..|+++|+... ...++++.++++..++.+..++.+           .+||||||||++|||
T Consensus        81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la~  148 (490)
T PRK10938         81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRF-----------KYLSTGETRKTLLCQ  148 (490)
T ss_pred             eeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence            99998753  2       34888887532 112345667777777766555443           789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus       149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  224 (490)
T PRK10938        149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ  224 (490)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999999999998864 47899999999998876 99999999999999999988765

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=2.3e-43  Score=337.49  Aligned_cols=190  Identities=25%  Similarity=0.370  Sum_probs=161.1

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhc
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNL  316 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl  316 (467)
                      |+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.     ..+|+||++.+|. .|+.||+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l   75 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI   75 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence            579999999999999999999999999999999999999999999999876443     2489999999887 5999998


Q ss_pred             CcC-----CCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCC
Q 044927          317 DPL-----GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS  387 (467)
Q Consensus       317 ~~~-----~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~  387 (467)
                      .+.     ....+.    ++.+.++..++.+..++           ....||||||||++|||||+.+|++|||||||++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g  144 (230)
T TIGR01184        76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA  144 (230)
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            642     112222    24555666666554443           3468999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          388 IDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       388 LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ||+.+++.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|+..+++
T Consensus       145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  203 (230)
T TIGR01184       145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP  203 (230)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence            99999999999998853  37899999999998765 9999999999999999876663

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.4e-43  Score=363.24  Aligned_cols=217  Identities=24%  Similarity=0.431  Sum_probs=182.5

Q ss_pred             cEEEEeEEEEeCCCCC--ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC----ccEEEEcCEeCCCCCHHH
Q 044927          220 RIELEDLKVRYRPNTP--LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE----NGRILIDGLDICSMGLKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~--~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~----~G~i~i~g~~i~~~~~~~  293 (467)
                      -++++|+++.|.....  .+++|+||++.+||++||||+|||||||+.++|+|+.++.    +|+|.++|.|+..++.+.
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~   84 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE   84 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence            5899999999964432  4899999999999999999999999999999999999988    899999999999888765


Q ss_pred             Hh----cccEEEcCCCc-ccc--ccHHHhcC----cCCCC----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927          294 LR----TKLSIIPQEPT-LFR--GSVRTNLD----PLGMY----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW  358 (467)
Q Consensus       294 ~r----~~i~~v~Q~~~-lf~--~tv~enl~----~~~~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L  358 (467)
                      .|    +.|+||||+|. .++  .||.+-|.    .....    ..++..+.++.+++.+-...         .....+|
T Consensus        85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL  155 (539)
T COG1123          85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL  155 (539)
T ss_pred             HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence            43    56999999985 344  36665553    11111    12345567777777654443         2234789


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                      |||||||+.||+||+.+|++||+||||++||+.++.+|++.|+++.  .|.++|+|||++..+.. ||||+||++|+++|
T Consensus       156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE  235 (539)
T COG1123         156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE  235 (539)
T ss_pred             CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999864  58999999999999876 99999999999999


Q ss_pred             ecChhhHhcc
Q 044927          436 YDLPSKLMET  445 (467)
Q Consensus       436 ~g~~~~l~~~  445 (467)
                      .|++++++++
T Consensus       236 ~G~~~~i~~~  245 (539)
T COG1123         236 TGPTEEILSN  245 (539)
T ss_pred             ecCHHHHHhc
Confidence            9999999974

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.8e-43  Score=329.25  Aligned_cols=194  Identities=24%  Similarity=0.367  Sum_probs=167.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus         2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~   78 (204)
T PRK13538          2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY   78 (204)
T ss_pred             eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence            789999999964  35999999999999999999999999999999999999999999999999987543 456778999


Q ss_pred             EcCCCcccc-ccHHHhcCcCCC----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          301 IPQEPTLFR-GSVRTNLDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      ++|++.+++ .|++||+.+...    ..++++.++++..++.++.++.           ...||||||||++||||++++
T Consensus        79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~~  147 (204)
T PRK13538         79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLTR  147 (204)
T ss_pred             eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence            999998876 599999964311    2345667788888887655443           367999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhc-CEEEEE
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDS-DMFMVL  428 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~-d~i~vl  428 (467)
                      |+++||||||++||+.+...+.+.|++. .+++|+|++||+++.+..| +|++++
T Consensus       148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            9999999999999999999999999886 3478999999999999764 677776

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=4.4e-43  Score=335.59  Aligned_cols=199  Identities=24%  Similarity=0.357  Sum_probs=163.8

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHHhcccEEEcCCCc-cc-c-
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LF-R-  309 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~-  309 (467)
                      +++|+||++++||+++|+||||||||||+++|+|+++|    ++|+|.++|.++...  ...++.++|++|++. .| + 
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~   78 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL   78 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence            47899999999999999999999999999999999999    899999999988654  222468999999985 34 3 


Q ss_pred             ccHHHhcCcC----CCCC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEee
Q 044927          310 GSVRTNLDPL----GMYS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD  382 (467)
Q Consensus       310 ~tv~enl~~~----~~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLD  382 (467)
                      .|+.+|+.+.    ....   .+++.++++.+++.+.        ++........||||||||++||||++++|++||||
T Consensus        79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD  150 (230)
T TIGR02770        79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD  150 (230)
T ss_pred             cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            4888887421    1111   2235556666655411        12234455789999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          383 EATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       383 Epts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |||++||+.+++.+.+.|++..  .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  216 (230)
T TIGR02770       151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN  216 (230)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999864  37899999999999875 999999999999999999999754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=9.8e-43  Score=315.57  Aligned_cols=159  Identities=31%  Similarity=0.547  Sum_probs=147.2

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcccE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKLS  299 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i~  299 (467)
                      ++++|++++|++  .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+++++
T Consensus         1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~   78 (163)
T cd03216           1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA   78 (163)
T ss_pred             CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence            478999999964  3599999999999999999999999999999999999999999999999999877654 4577899


Q ss_pred             EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      |++|                                                      ||||||||++||||++++|+++
T Consensus        79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il  104 (163)
T cd03216          79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL  104 (163)
T ss_pred             EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence            9999                                                      8999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927          380 VLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                      ||||||++||+.+++.+.+.+++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus       105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999998864 48899999999998765 99999999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-43  Score=370.93  Aligned_cols=212  Identities=22%  Similarity=0.337  Sum_probs=174.8

Q ss_pred             EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcccEEE
Q 044927          223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKLSII  301 (467)
Q Consensus       223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i~~v  301 (467)
                      ++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|+
T Consensus         1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v   78 (491)
T PRK10982          1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV   78 (491)
T ss_pred             CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence            3689999964  3599999999999999999999999999999999999999999999999998766543 456789999


Q ss_pred             cCCCcccc-ccHHHhcCcCCC------CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          302 PQEPTLFR-GSVRTNLDPLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       302 ~Q~~~lf~-~tv~enl~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      ||++.+|. .|++||+.+...      .+.++..+     .+.+.++.+  |++........+||||||||++|||||+.
T Consensus        79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~  151 (491)
T PRK10982         79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY  151 (491)
T ss_pred             ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence            99998775 599999964211      12221111     122333333  34334445568899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. |||+++|++|++++.|+++++.
T Consensus       152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  222 (491)
T PRK10982        152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT  222 (491)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence            999999999999999999999999998863 57899999999998875 9999999999999999988864

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6.2e-43  Score=327.48  Aligned_cols=193  Identities=22%  Similarity=0.285  Sum_probs=162.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....++++++|
T Consensus         2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~   78 (200)
T PRK13540          2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF   78 (200)
T ss_pred             EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence            789999999964  359999999999999999999999999999999999999999999999998864 34567889999


Q ss_pred             EcCCCcccc-ccHHHhcCcCC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      +||++.++. .|+++|+.+..  ...+..+.++++..++.+..+           ....+|||||+||++||||++++|+
T Consensus        79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~  147 (200)
T PRK13540         79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-----------YPCGLLSSGQKRQVALLRLWMSKAK  147 (200)
T ss_pred             eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence            999998864 69999986431  112234455555555543322           2335799999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEEE
Q 044927          378 ILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFMV  427 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~v  427 (467)
                      +|||||||++||+.+...+.+.|++. .+++|+|++||+.+.+..||.-.+
T Consensus       148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~  198 (200)
T PRK13540        148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY  198 (200)
T ss_pred             EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence            99999999999999999999999985 358999999999999999997654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-43  Score=369.95  Aligned_cols=207  Identities=27%  Similarity=0.358  Sum_probs=173.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i  298 (467)
                      .++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+++
T Consensus         4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i   81 (501)
T PRK11288          4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV   81 (501)
T ss_pred             eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence            4899999999964  359999999999999999999999999999999999999999999999999875543 3467889


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC--C----CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG--M----YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~--~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      +|+||++.+|.. |+.+|+.+..  .    ...    +++.++++.+++           +........+||||||||++
T Consensus        82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~  150 (501)
T PRK11288         82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV-----------DIDPDTPLKYLSIGQRQMVE  150 (501)
T ss_pred             EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC-----------CCCcCCchhhCCHHHHHHHH
Confidence            999999988875 9999996421  1    111    123334444333           22233445789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      |||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+++..++.
T Consensus       151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence            9999999999999999999999999999999998864 47999999999998875 999999999999987654

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-43  Score=312.08  Aligned_cols=213  Identities=26%  Similarity=0.414  Sum_probs=184.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----------
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----------  289 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----------  289 (467)
                      .++++|+.++|+..  .+|+++|++-++|+.+.|+|.|||||||++++|.=+..|+.|+|.++|..+.-.          
T Consensus         6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a   83 (256)
T COG4598           6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA   83 (256)
T ss_pred             ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence            58999999999754  399999999999999999999999999999999999999999999999877421          


Q ss_pred             C---HHHHhcccEEEcCCCcccc-ccHHHhcCcCC----CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927          290 G---LKDLRTKLSIIPQEPTLFR-GSVRTNLDPLG----MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN  357 (467)
Q Consensus       290 ~---~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~  357 (467)
                      +   .+.+|.+.++|+|+..|++ .|+.||+.-.+    ..+.    ++.+..+.++|+.+..+..|           ..
T Consensus        84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~  152 (256)
T COG4598          84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH  152 (256)
T ss_pred             CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence            1   2457889999999999986 49999984211    1222    23344677778777766666           78


Q ss_pred             CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927          358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                      |||||+||++|||||+.+|+++++|||||+|||+-.-.+.+.++++. +|+|.+++||.+.+++. +.+|+++++|.|-|
T Consensus       153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE  232 (256)
T COG4598         153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE  232 (256)
T ss_pred             cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence            99999999999999999999999999999999999999999999865 59999999999999998 89999999999999


Q ss_pred             ecChhhHhcc
Q 044927          436 YDLPSKLMET  445 (467)
Q Consensus       436 ~g~~~~l~~~  445 (467)
                      +|+|++++..
T Consensus       233 ~G~P~qvf~n  242 (256)
T COG4598         233 EGPPEQVFGN  242 (256)
T ss_pred             cCChHHHhcC
Confidence            9999999864

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.3e-43  Score=306.47  Aligned_cols=194  Identities=24%  Similarity=0.394  Sum_probs=169.2

Q ss_pred             eCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927          230 YRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR  309 (467)
Q Consensus       230 y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~  309 (467)
                      |.....++|+|+||++.+||.++|.||||||||||+|.++-+.+|++|.+++.|++++.++++.+|++++|+.|.|.||.
T Consensus        11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg   90 (223)
T COG4619          11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG   90 (223)
T ss_pred             hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence            43344569999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHhcCcC-----CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927          310 GSVRTNLDPL-----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA  384 (467)
Q Consensus       310 ~tv~enl~~~-----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp  384 (467)
                      +||+||+.+-     ...+.......++++++.+          +.+..+..+||||||||++|+|-|.--|+||+||||
T Consensus        91 ~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~  160 (223)
T COG4619          91 DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI  160 (223)
T ss_pred             cchhhccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence            9999999642     1233344444555555544          334456688999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhH-HhhcCEEEEEeCCEE
Q 044927          385 TASIDSATDAILQRIIREEF--PGSTVITVAHRVPT-ITDSDMFMVLSYGEL  433 (467)
Q Consensus       385 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~-~~~~d~i~vl~~G~i  433 (467)
                      ||+||+.+.+.|-+.|.++.  ++..++.|||+.+. ++.+|+++-+..|++
T Consensus       161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            99999999999999998864  47899999999987 778999999999986

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.2e-42  Score=371.16  Aligned_cols=217  Identities=23%  Similarity=0.410  Sum_probs=177.9

Q ss_pred             cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHH
Q 044927          220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~~~  292 (467)
                      .++++|++++|+++  ..++|+|+||++++||++||+||||||||||+++|+|+++|     ++|+|.++|.++...+..
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   84 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ   84 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence            48999999999632  23599999999999999999999999999999999999987     799999999999876644


Q ss_pred             H---Hh-cccEEEcCCCc--ccc-ccHHHhcCcC----CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927          293 D---LR-TKLSIIPQEPT--LFR-GSVRTNLDPL----GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN  357 (467)
Q Consensus       293 ~---~r-~~i~~v~Q~~~--lf~-~tv~enl~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~  357 (467)
                      +   +| +++||+||++.  +++ .|+.+|+.+.    ...+    .+++.++++.+++.+...        .......+
T Consensus        85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~  156 (529)
T PRK15134         85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ  156 (529)
T ss_pred             HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence            3   33 57999999985  444 4888887421    1112    234555666666643110        11223478


Q ss_pred             CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927          358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELV  434 (467)
Q Consensus       358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv  434 (467)
                      ||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.  .++|+|+|||+++.+.. ||||++|++|+++
T Consensus       157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~  236 (529)
T PRK15134        157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV  236 (529)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999998863  37999999999998875 9999999999999


Q ss_pred             EecChhhHhc
Q 044927          435 EYDLPSKLME  444 (467)
Q Consensus       435 ~~g~~~~l~~  444 (467)
                      +.|+++++..
T Consensus       237 ~~g~~~~~~~  246 (529)
T PRK15134        237 EQNRAATLFS  246 (529)
T ss_pred             EeCCHHHHhh
Confidence            9999999865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=6.6e-43  Score=373.14  Aligned_cols=214  Identities=26%  Similarity=0.443  Sum_probs=178.2

Q ss_pred             cEEEEeEEEEeCC---------CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 044927          220 RIELEDLKVRYRP---------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG  290 (467)
Q Consensus       220 ~i~~~~vs~~y~~---------~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~  290 (467)
                      .++++|++++|+.         +...+|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++...+
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~  353 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN  353 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence            5899999999952         12458999999999999999999999999999999999995 8999999999987665


Q ss_pred             HHH---HhcccEEEcCCC--cccc-ccHHHhcCcCC-----CCC----HHHHHHHHHHcChH-HHHHhCCCcccccccCC
Q 044927          291 LKD---LRTKLSIIPQEP--TLFR-GSVRTNLDPLG-----MYS----DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDE  354 (467)
Q Consensus       291 ~~~---~r~~i~~v~Q~~--~lf~-~tv~enl~~~~-----~~~----~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~  354 (467)
                      ...   +|++++|+||++  .+|+ .|+.||+.+..     ..+    ++++.++++..++. +..++           .
T Consensus       354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~  422 (529)
T PRK15134        354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-----------Y  422 (529)
T ss_pred             hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence            433   467899999998  3665 49999996321     011    12344556666553 23333           3


Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927          355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYG  431 (467)
Q Consensus       355 g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G  431 (467)
                      ..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..  .++|+|+|||+++.+.. |||+++|++|
T Consensus       423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G  502 (529)
T PRK15134        423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG  502 (529)
T ss_pred             CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence            47899999999999999999999999999999999999999999999864  37899999999998875 9999999999


Q ss_pred             EEEEecChhhHhcc
Q 044927          432 ELVEYDLPSKLMET  445 (467)
Q Consensus       432 ~iv~~g~~~~l~~~  445 (467)
                      +|++.|+++++++.
T Consensus       503 ~i~~~~~~~~~~~~  516 (529)
T PRK15134        503 EVVEQGDCERVFAA  516 (529)
T ss_pred             EEEEEcCHHHHhcC
Confidence            99999999998753

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.8e-43  Score=305.43  Aligned_cols=206  Identities=27%  Similarity=0.372  Sum_probs=176.1

Q ss_pred             cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 044927          220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---L  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~  294 (467)
                      .|+++++++.-+..  .-.+|++++|.|++||.+|||||||||||||+-+++|+-+|++|+|++.|+++.+++.+.   +
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            47888888877543  235899999999999999999999999999999999999999999999999999987653   3


Q ss_pred             h-cccEEEcCCCccc-cccHHHhcCc-C---CC-C--CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          295 R-TKLSIIPQEPTLF-RGSVRTNLDP-L---GM-Y--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       295 r-~~i~~v~Q~~~lf-~~tv~enl~~-~---~~-~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      | +++|+|+|..+|. +.|-.||+.. .   ++ .  ......+.++++|+.+-+.+.|           .+|||||+||
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR  154 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR  154 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence            4 6799999999876 4599999852 1   21 1  1223455677777776666666           8899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEe
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEY  436 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~  436 (467)
                      |+||||+...|++|+-||||-+||..|-.+|.+.+-.+.  .|.|.++|||++.....|||++-|.+|+|+++
T Consensus       155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~  227 (228)
T COG4181         155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED  227 (228)
T ss_pred             HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence            999999999999999999999999999999999987643  48999999999999999999999999999864

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.4e-42  Score=328.43  Aligned_cols=195  Identities=23%  Similarity=0.273  Sum_probs=164.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++  +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...   ..++.++
T Consensus        11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~   85 (214)
T PRK13543         11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA   85 (214)
T ss_pred             eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence            5999999999964  3499999999999999999999999999999999999999999999999988642   3456799


Q ss_pred             EEcCCCccccc-cHHHhcCcC----CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          300 IIPQEPTLFRG-SVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      |++|++.+|.. |++||+.+.    ....++.+.+.++..++.+..+           .....||||||||++||||+++
T Consensus        86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~  154 (214)
T PRK13543         86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYED-----------TLVRQLSAGQKKRLALARLWLS  154 (214)
T ss_pred             EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhcc-----------CChhhCCHHHHHHHHHHHHHhc
Confidence            99999988876 999998532    1112233445556555543322           2346899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeC
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSY  430 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~  430 (467)
                      +|+++||||||++||+.+.+.+.+.+++. .+++|+|++||+++.+.. ||++++++.
T Consensus       155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            99999999999999999999999999875 457999999999998875 999999874

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-42  Score=369.10  Aligned_cols=210  Identities=27%  Similarity=0.380  Sum_probs=173.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHH-Hhcc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKD-LRTK  297 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~-~r~~  297 (467)
                      ++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|  ++|+|.++|.++...+... .++.
T Consensus         2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (500)
T TIGR02633         2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG   79 (500)
T ss_pred             EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            789999999963  3599999999999999999999999999999999999987  7999999999998776544 4567


Q ss_pred             cEEEcCCCccccc-cHHHhcCcCCC-------CCHH----HHHHHHHHcChHHHHHhCCCcccccc-cCCCCCCChhHHH
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPLGM-------YSDN----EIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQ  364 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~~~-------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v-~~~g~~LSgGq~Q  364 (467)
                      ++||||++.+|.. |++||+.+...       ...+    ++.++++..++           +... .....+|||||||
T Consensus        80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgG~~q  148 (500)
T TIGR02633        80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL-----------DADNVTRPVGDYGGGQQQ  148 (500)
T ss_pred             EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCC-----------CCCcccCchhhCCHHHHH
Confidence            9999999988765 99999964211       1111    22233333332           2111 1234689999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |++|||||+.+|++|||||||++||+.+...+.+.|+++ .+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence            999999999999999999999999999999999999885 347899999999999875 999999999999999988765


Q ss_pred             h
Q 044927          443 M  443 (467)
Q Consensus       443 ~  443 (467)
                      .
T Consensus       229 ~  229 (500)
T TIGR02633       229 S  229 (500)
T ss_pred             C
Confidence            3

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-42  Score=376.19  Aligned_cols=217  Identities=22%  Similarity=0.344  Sum_probs=176.7

Q ss_pred             cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC----------
Q 044927          220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC----------  287 (467)
Q Consensus       220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~----------  287 (467)
                      .|+++|++++|+..  ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.          
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~   91 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS   91 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence            59999999999632  235999999999999999999999999999999999999999999999997552          


Q ss_pred             CCCHH---HHh-cccEEEcCCC--cccc-ccHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCccccccc
Q 044927          288 SMGLK---DLR-TKLSIIPQEP--TLFR-GSVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVS  352 (467)
Q Consensus       288 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~  352 (467)
                      +.+..   .+| +.||||+|+|  .+++ .||.||+.+.    ...+.    +++.++++.+++.+.        +....
T Consensus        92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~  163 (623)
T PRK10261         92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS  163 (623)
T ss_pred             cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence            22222   233 4799999998  5665 5999999632    11222    234455666665310        11223


Q ss_pred             CCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEe
Q 044927          353 DEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLS  429 (467)
Q Consensus       353 ~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~  429 (467)
                      ....+||||||||++|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||||++|+
T Consensus       164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~  243 (623)
T PRK10261        164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY  243 (623)
T ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence            3447899999999999999999999999999999999999999999999864 3 8999999999998865 99999999


Q ss_pred             CCEEEEecChhhHhc
Q 044927          430 YGELVEYDLPSKLME  444 (467)
Q Consensus       430 ~G~iv~~g~~~~l~~  444 (467)
                      +|+|++.|+++++..
T Consensus       244 ~G~i~~~g~~~~~~~  258 (623)
T PRK10261        244 QGEAVETGSVEQIFH  258 (623)
T ss_pred             CCeecccCCHHHhhc
Confidence            999999999999875

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.2e-42  Score=370.49  Aligned_cols=219  Identities=25%  Similarity=0.396  Sum_probs=175.2

Q ss_pred             cEEEEeEEEEeCC---CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc-CEe---CCCCC--
Q 044927          220 RIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID-GLD---ICSMG--  290 (467)
Q Consensus       220 ~i~~~~vs~~y~~---~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~-g~~---i~~~~--  290 (467)
                      .++++|++++|++   +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+   +...+  
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~  358 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD  358 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence            5999999999953   22459999999999999999999999999999999999999999999996 643   33332  


Q ss_pred             -HHHHhcccEEEcCCCccccc-cHHHhcCcC-C-CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          291 -LKDLRTKLSIIPQEPTLFRG-SVRTNLDPL-G-MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       291 -~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~-~-~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                       ...+|++++|+||++.+|.. |+.||+.+. . ....    +++.++++..++.+.-      .+........+|||||
T Consensus       359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgGq  432 (520)
T TIGR03269       359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEGE  432 (520)
T ss_pred             hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHHH
Confidence             22456789999999988864 999999531 1 1111    2334455555543200      0001233447899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      |||++|||||+.+|++|||||||++||+.+.+.+.+.|++..  .+.|+|+|||+++.+.. |||+++|++|++++.|++
T Consensus       433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~  512 (520)
T TIGR03269       433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP  512 (520)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999998863  37999999999999875 999999999999999999


Q ss_pred             hhHhc
Q 044927          440 SKLME  444 (467)
Q Consensus       440 ~~l~~  444 (467)
                      +++.+
T Consensus       513 ~~~~~  517 (520)
T TIGR03269       513 EEIVE  517 (520)
T ss_pred             HHHHh
Confidence            88753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3e-42  Score=324.54  Aligned_cols=194  Identities=27%  Similarity=0.338  Sum_probs=166.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|+++.|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  . ..+++++
T Consensus         2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~   76 (207)
T PRK13539          2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH   76 (207)
T ss_pred             EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence            3789999999964  358999999999999999999999999999999999999999999999998642  2 2788899


Q ss_pred             EEcCCCccc-cccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          300 IIPQEPTLF-RGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       300 ~v~Q~~~lf-~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |++|++.++ ..|+++|+.+..   ...++++.++++..++.+..+..           ...||||||||++||||++++
T Consensus        77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la~al~~~  145 (207)
T PRK13539         77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLP-----------FGYLSAGQKRRVALARLLVSN  145 (207)
T ss_pred             EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence            999988775 569999985421   12345577788888887644332           257999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEEEEeC
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      |+++||||||++||+.+...+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus       146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~  200 (207)
T PRK13539        146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP  200 (207)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence            9999999999999999999999999875 458999999999999988 99988854

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=2.7e-42  Score=322.69  Aligned_cols=192  Identities=23%  Similarity=0.332  Sum_probs=161.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|+++.|++  +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   77 (198)
T TIGR01189         1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY   77 (198)
T ss_pred             CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence            478999999964  35899999999999999999999999999999999999999999999999987654 456788999


Q ss_pred             EcCCCcccc-ccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      ++|++.+|+ .|+.+|+.+..   ...++++.++++..++.++.++.           ..+||||||||++||||++++|
T Consensus        78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p  146 (198)
T TIGR01189        78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP-----------AAQLSAGQQRRLALARLWLSRA  146 (198)
T ss_pred             eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCC-----------hhhcCHHHHHHHHHHHHHhcCC
Confidence            999998876 59999996421   11233567778888887665443           3679999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEEE
Q 044927          377 RILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFMV  427 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~v  427 (467)
                      +++||||||++||+.+.+.+.+.|++. .++.|+|++||+...+ .|++++.
T Consensus       147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~  197 (198)
T TIGR01189       147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR  197 (198)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence            999999999999999999999999885 4578999999998443 2466554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-42  Score=367.40  Aligned_cols=217  Identities=22%  Similarity=0.345  Sum_probs=174.7

Q ss_pred             cEEEEeEEEEeCC-CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCH-HHHhc
Q 044927          220 RIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGL-KDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~-~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p~~G~i~i~g~~i~~~~~-~~~r~  296 (467)
                      .++++|+++.|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+++
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~  338 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ  338 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence            5999999999952 12358999999999999999999999999999999999998 599999999999865543 34567


Q ss_pred             ccEEEcCCC---cccc-ccHHHhcCcCC--CC------CHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHH
Q 044927          297 KLSIIPQEP---TLFR-GSVRTNLDPLG--MY------SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQR  363 (467)
Q Consensus       297 ~i~~v~Q~~---~lf~-~tv~enl~~~~--~~------~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~  363 (467)
                      .++|+||++   .+|. .|+.||+.+..  ..      +.++.     ...+.+.++.+  |++ ........+||||||
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k  411 (506)
T PRK13549        339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ  411 (506)
T ss_pred             CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence            899999996   3554 59999996421  11      11111     11123334443  232 123445578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~  441 (467)
                      ||++|||||+.+|++|||||||++||+.+.+.+.+.|+++ .+|+|+|++||+++.+.. |||+++|++|+++..|++++
T Consensus       412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~  491 (506)
T PRK13549        412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN  491 (506)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence            9999999999999999999999999999999999999885 358999999999999875 99999999999999999887


Q ss_pred             Hh
Q 044927          442 LM  443 (467)
Q Consensus       442 l~  443 (467)
                      +.
T Consensus       492 ~~  493 (506)
T PRK13549        492 LT  493 (506)
T ss_pred             CC
Confidence            63

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=4.2e-42  Score=400.22  Aligned_cols=215  Identities=24%  Similarity=0.349  Sum_probs=186.4

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..|+++||++.|+++++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.+
T Consensus       927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred             ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence            3699999999996434569999999999999999999999999999999999999999999999999864 456678899


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      ||+||++.+|+. |++||+.+..   ..+.    +++.+.++..++.+..+           ....+||||||||++|||
T Consensus      1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257      1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----------EEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred             EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence            999999998865 9999996431   1221    23455666666554433           344789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||+.+|+++||||||+|||+.+++.+++.|++..+|+|+|++||+++.+.. ||||++|++|+++..|++++|.++
T Consensus      1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257      1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred             HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence            999999999999999999999999999999998779999999999999875 999999999999999999998753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=3.1e-42  Score=367.32  Aligned_cols=211  Identities=28%  Similarity=0.468  Sum_probs=173.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEc----------------
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPENGRILID----------------  282 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~G~i~i~----------------  282 (467)
                      |+++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+.  +|++|+|.++                
T Consensus         1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~   78 (520)
T TIGR03269         1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV   78 (520)
T ss_pred             CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence            478999999963  35999999999999999999999999999999999996  7999999997                


Q ss_pred             -------CEeCC-------CCC---HHHHhcccEEEcCC-Ccccc-ccHHHhcCcC---CCCCH----HHHHHHHHHcCh
Q 044927          283 -------GLDIC-------SMG---LKDLRTKLSIIPQE-PTLFR-GSVRTNLDPL---GMYSD----NEIWEAMEKCQL  336 (467)
Q Consensus       283 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~tv~enl~~~---~~~~~----~~~~~~~~~~~l  336 (467)
                             |.++.       ..+   ...+|+.++|+||+ +.+|+ .|++||+.+.   ...+.    +++.++++.+++
T Consensus        79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl  158 (520)
T TIGR03269        79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL  158 (520)
T ss_pred             ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                   32221       111   12457789999998 56776 4999999631   11221    345556677776


Q ss_pred             HHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEcc
Q 044927          337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAH  414 (467)
Q Consensus       337 ~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH  414 (467)
                      .+..++.           ..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .++|+|+|||
T Consensus       159 ~~~~~~~-----------~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH  227 (520)
T TIGR03269       159 SHRITHI-----------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH  227 (520)
T ss_pred             hhhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence            6554443           37899999999999999999999999999999999999999999998863  3799999999


Q ss_pred             ChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          415 RVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       415 ~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +++.+.. ||+|++|++|++++.|+++++..
T Consensus       228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  258 (520)
T TIGR03269       228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA  258 (520)
T ss_pred             CHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence            9999875 99999999999999999988754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-42  Score=325.41  Aligned_cols=185  Identities=28%  Similarity=0.472  Sum_probs=165.1

Q ss_pred             cEEEEeEEEEeCCCC-------CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 044927          220 RIELEDLKVRYRPNT-------PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~-------~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~  292 (467)
                      .++++|+++.|+...       ..+++||||+|++||++||||+|||||||+-++|+|+++|++|+|+++|.++..++  
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--   81 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--   81 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence            489999999996432       25899999999999999999999999999999999999999999999999876654  


Q ss_pred             HHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                                                 .....+++.+.++.+++.+ +..+.|           .+||||||||++||||
T Consensus        82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA  123 (268)
T COG4608          82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA  123 (268)
T ss_pred             ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence                                       1122456888899998765 666776           6799999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |+.+|+++++|||+|+||...+.++.+.+.++.  .+.|.++|||+++.+++ ||||.||..|+|+|.|+.+++++
T Consensus       124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~  199 (268)
T COG4608         124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS  199 (268)
T ss_pred             HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence            999999999999999999999999999998864  38999999999999997 99999999999999999999987

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8e-43  Score=311.65  Aligned_cols=212  Identities=30%  Similarity=0.446  Sum_probs=186.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++||+++|++  +.+++++|++|++|.+++++||||||||||+.+++|+.++++|+|+++|.++..++.+++.+++++
T Consensus         2 I~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI   79 (252)
T COG4604           2 ITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI   79 (252)
T ss_pred             eeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence            789999999964  469999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCccc-cccHHHhcCcCC-CC-----CH---HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          301 IPQEPTLF-RGSVRTNLDPLG-MY-----SD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       301 v~Q~~~lf-~~tv~enl~~~~-~~-----~~---~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      +-|+.++- +-||+|-+.|++ .+     +.   ..+.++++-.+|.+.-++.           -.+||||||||.-+|.
T Consensus        80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIAM  148 (252)
T COG4604          80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIAM  148 (252)
T ss_pred             HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhhe
Confidence            99998875 459999887643 22     22   2355667666666554443           2568999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      .++++.+.++||||.++||.+....+++.++++..  +||+++|-|+.+.+.. +|+|+-|++|+++.+|+|+|+++.
T Consensus       149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~  226 (252)
T COG4604         149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP  226 (252)
T ss_pred             eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence            99999999999999999999999999999988643  8999999999999875 999999999999999999999864

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-41  Score=330.64  Aligned_cols=209  Identities=22%  Similarity=0.268  Sum_probs=169.5

Q ss_pred             cEEEEeEEEEeCC------------------CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q 044927          220 RIELEDLKVRYRP------------------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI  281 (467)
Q Consensus       220 ~i~~~~vs~~y~~------------------~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i  281 (467)
                      +|+++||+++|..                  ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            5788888887743                  1235899999999999999999999999999999999999999999999


Q ss_pred             cCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhcCcC---CCCCHHHHH----HHHHHcChHHHHHhCCCcccccccC
Q 044927          282 DGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPL---GMYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSD  353 (467)
Q Consensus       282 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~---~~~~~~~~~----~~~~~~~l~~~i~~l~~g~~t~v~~  353 (467)
                      +|.             +++++|++.+++ .|+++|+.+.   ...+.++..    .+++..++.+.           +..
T Consensus        84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~  139 (264)
T PRK13546         84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQ  139 (264)
T ss_pred             CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcC
Confidence            984             456778776654 5999998532   122333332    23344444333           334


Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927          354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYG  431 (467)
Q Consensus       354 ~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G  431 (467)
                      ....|||||+||++||||++.+|++|||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+.. ||+|++|++|
T Consensus       140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G  219 (264)
T PRK13546        140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG  219 (264)
T ss_pred             CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence            457899999999999999999999999999999999999999999998753 48999999999999875 9999999999


Q ss_pred             EEEEecChhhHhccCchHHHH
Q 044927          432 ELVEYDLPSKLMETNSAFSKL  452 (467)
Q Consensus       432 ~iv~~g~~~~l~~~~~~~~~l  452 (467)
                      ++++.|+++++.+....|.+.
T Consensus       220 ~i~~~g~~~~~~~~~~~~~~~  240 (264)
T PRK13546        220 KLKDYGELDDVLPKYEAFLND  240 (264)
T ss_pred             EEEEeCCHHHHHHHhHHHHHH
Confidence            999999999998754444433

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.5e-41  Score=331.79  Aligned_cols=216  Identities=30%  Similarity=0.504  Sum_probs=184.8

Q ss_pred             cccEEEEeEEEEeCCC---------CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 044927          218 HGRIELEDLKVRYRPN---------TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS  288 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~---------~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~  288 (467)
                      +..++.+||...|+-.         ...+++++||++++||.+||||+||||||||-.+|+|+.++. |+|.++|+++..
T Consensus       274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~  352 (534)
T COG4172         274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG  352 (534)
T ss_pred             CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence            3468999999999532         124799999999999999999999999999999999999876 999999999998


Q ss_pred             CCHHH---HhcccEEEcCCCc--c-ccccHHHhcCc----CC-CCC----HHHHHHHHHHcChHHH-HHhCCCccccccc
Q 044927          289 MGLKD---LRTKLSIIPQEPT--L-FRGSVRTNLDP----LG-MYS----DNEIWEAMEKCQLKAT-ISRLPMLLDSSVS  352 (467)
Q Consensus       289 ~~~~~---~r~~i~~v~Q~~~--l-f~~tv~enl~~----~~-~~~----~~~~~~~~~~~~l~~~-i~~l~~g~~t~v~  352 (467)
                      ++.++   +|+++-+|||||+  | ...||.+-|.-    .. ..+    ++++.++++.+|++.. ..+.|        
T Consensus       353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------  424 (534)
T COG4172         353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP--------  424 (534)
T ss_pred             cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC--------
Confidence            87654   6899999999997  2 34587776631    11 222    4567788999998754 34555        


Q ss_pred             CCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEe
Q 044927          353 DEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLS  429 (467)
Q Consensus       353 ~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~  429 (467)
                         ..+|||||||||||||++-+|++++||||||+||...+.++.+.++++.  .+-+-++||||+..++. ||+|+||+
T Consensus       425 ---hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~  501 (534)
T COG4172         425 ---HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR  501 (534)
T ss_pred             ---cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence               6789999999999999999999999999999999999999999998863  47899999999999986 99999999


Q ss_pred             CCEEEEecChhhHhcc
Q 044927          430 YGELVEYDLPSKLMET  445 (467)
Q Consensus       430 ~G~iv~~g~~~~l~~~  445 (467)
                      +|+|||+|+.+++++.
T Consensus       502 ~GkiVE~G~~~~if~~  517 (534)
T COG4172         502 DGKIVEQGPTEAVFAN  517 (534)
T ss_pred             CCEEeeeCCHHHHhcC
Confidence            9999999999999974

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=9.1e-42  Score=325.13  Aligned_cols=198  Identities=25%  Similarity=0.372  Sum_probs=160.2

Q ss_pred             EEEEeEEEEeCC----C-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc--CE--eCCCCCH
Q 044927          221 IELEDLKVRYRP----N-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID--GL--DICSMGL  291 (467)
Q Consensus       221 i~~~~vs~~y~~----~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~--g~--~i~~~~~  291 (467)
                      ++++|++++|+.    + ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++  |.  ++..++.
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~   81 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP   81 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence            789999999963    1 2358999999999999999999999999999999999999999999998  42  5555554


Q ss_pred             HH---H-hcccEEEcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCC
Q 044927          292 KD---L-RTKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS  359 (467)
Q Consensus       292 ~~---~-r~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS  359 (467)
                      ..   + ++.++|+||++.+|.. |++||+.+.   ....    .+++.++++..++.+..          ....+.+||
T Consensus        82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS  151 (224)
T TIGR02324        82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS  151 (224)
T ss_pred             HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence            43   2 4579999999988765 999998531   1122    12334445555543322          122457899


Q ss_pred             hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEE
Q 044927          360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVL  428 (467)
Q Consensus       360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl  428 (467)
                      ||||||++|||||+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .|||++.+
T Consensus       152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            999999999999999999999999999999999999999998864 4789999999999886 59999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-42  Score=365.11  Aligned_cols=211  Identities=22%  Similarity=0.341  Sum_probs=170.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i  298 (467)
                      .++++|+++.|.    .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus       265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i  340 (510)
T PRK09700        265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM  340 (510)
T ss_pred             EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence            599999999762    28999999999999999999999999999999999999999999999998866543 3567789


Q ss_pred             EEEcCCC---ccccc-cHHHhcCcCCCC------------CHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChh
Q 044927          299 SIIPQEP---TLFRG-SVRTNLDPLGMY------------SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVG  361 (467)
Q Consensus       299 ~~v~Q~~---~lf~~-tv~enl~~~~~~------------~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgG  361 (467)
                      +|+||++   .+|+. |++||+.+....            ...+.     ...+.+.++.+  |+. ........+||||
T Consensus       341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG  413 (510)
T PRK09700        341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGG  413 (510)
T ss_pred             EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChH
Confidence            9999984   46654 999998642110            11110     01122333333  232 2234455789999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      ||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++ .+|+|+|++||+++.+.. |||+++|++|++++.++.
T Consensus       414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            999999999999999999999999999999999999999885 358999999999998765 999999999999998876


Q ss_pred             hh
Q 044927          440 SK  441 (467)
Q Consensus       440 ~~  441 (467)
                      .+
T Consensus       494 ~~  495 (510)
T PRK09700        494 RD  495 (510)
T ss_pred             cc
Confidence            44

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=2e-41  Score=368.65  Aligned_cols=213  Identities=25%  Similarity=0.380  Sum_probs=182.9

Q ss_pred             cEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH---
Q 044927          220 RIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL---  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~---  294 (467)
                      .++++|++++|++.  .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++   
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   83 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL   83 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence            48999999999642  2458999999999999999999999999999999999999999999999999998876653   


Q ss_pred             -hcccEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          295 -RTKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       295 -r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                       |+.++|+||++.+|+. |+.||+.+..   ...    +++..+.++.+++.+..+.           ...+|||||+||
T Consensus        84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-----------~~~~LS~Gq~qr  152 (648)
T PRK10535         84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-----------QPSQLSGGQQQR  152 (648)
T ss_pred             HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-----------CcccCCHHHHHH
Confidence             5789999999999975 9999996321   111    1233445555555554444           347899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ++|||||+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.++.|||+++|++|++++.|++++..
T Consensus       153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence            999999999999999999999999999999999998864 589999999999998889999999999999999999875

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-42  Score=297.33  Aligned_cols=212  Identities=28%  Similarity=0.412  Sum_probs=184.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe--CCCCC----HHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD--ICSMG----LKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~--i~~~~----~~~  293 (467)
                      +|+++|++|.|+..  .+|.||+|+.+.||.+.+.||||+|||||++.|.=+.-|.+|+..|.|..  .++.+    ..+
T Consensus         2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~   79 (242)
T COG4161           2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD   79 (242)
T ss_pred             ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence            48899999999754  38999999999999999999999999999999999999999999998763  33332    346


Q ss_pred             HhcccEEEcCCCccccc-cHHHhcC--cCC--CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          294 LRTKLSIIPQEPTLFRG-SVRTNLD--PLG--MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~-tv~enl~--~~~--~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      +|+.+|+|+|+..|++- ||.||+.  +..  ..+++    +..+.++...+.++.+++|           -.|||||+|
T Consensus        80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq  148 (242)
T COG4161          80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ  148 (242)
T ss_pred             HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence            89999999999999875 9999984  211  12332    3456778888889989988           578999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |++|||||+.+|++|++||||++|||+-...+.+.|+++.. |.|-+++||..+..+. |.||+.|++|+|+|.|+++-.
T Consensus       149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence            99999999999999999999999999999999999999765 8999999999999886 999999999999999998876


Q ss_pred             hc
Q 044927          443 ME  444 (467)
Q Consensus       443 ~~  444 (467)
                      -.
T Consensus       229 t~  230 (242)
T COG4161         229 TE  230 (242)
T ss_pred             cC
Confidence            54

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.6e-41  Score=346.10  Aligned_cols=211  Identities=26%  Similarity=0.366  Sum_probs=174.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i  298 (467)
                      -++++|++++|++-  ++|+|+||++.+||++|++|.||||||||+|+|+|.|+|++|+|.+||++..-.++.+- ...|
T Consensus         8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI   85 (500)
T COG1129           8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI   85 (500)
T ss_pred             eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence            58999999999753  49999999999999999999999999999999999999999999999999987777654 5569


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCC-------CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGM-------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      +.|+||..|++. ||.|||-++..       .+..+..+.++     ..+.++...  ........+||.||||.|+|||
T Consensus        86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~--~~~~~~v~~LsiaqrQ~VeIAr  158 (500)
T COG1129          86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLD--IDPDTLVGDLSIAQRQMVEIAR  158 (500)
T ss_pred             EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCC--CChhhhhhhCCHHHHHHHHHHH
Confidence            999999999865 99999953322       22233322211     222322111  1123334679999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      |+..+++++|||||||+|+....+.+.+.+++++ +|.++|+||||++++.. ||||.||.||+.+..++.
T Consensus       159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~  229 (500)
T COG1129         159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT  229 (500)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence            9999999999999999999999999999999865 69999999999999876 999999999999988873

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.6e-41  Score=395.40  Aligned_cols=215  Identities=18%  Similarity=0.241  Sum_probs=186.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..|+++|++++|++..+.+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|.++.. +..+.|++|
T Consensus      1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257      1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred             ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence            3699999999997533469999999999999999999999999999999999999999999999999865 345678899


Q ss_pred             EEEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      ||+||++.++. .|++||+.+..   ..+.+    .+.+.++.+++.+..++.+           ..||||||||++|||
T Consensus      2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257      2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTAI 2083 (2272)
T ss_pred             EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence            99999998886 49999996421   12222    3445677777766655443           679999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||+.+|++++|||||+||||.+++.+++.|++. .+|+|+|++||+++.++. ||||++|++|+++..|+++++.++
T Consensus      2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257      2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred             HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence            999999999999999999999999999999985 458999999999999886 999999999999999999999653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=5.4e-42  Score=318.49  Aligned_cols=173  Identities=29%  Similarity=0.441  Sum_probs=146.1

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcccEEEcCCC--ccccc
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKLSIIPQEP--TLFRG  310 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~--~lf~~  310 (467)
                      +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .+...+++.++|+||++  .+|..
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            358999999999999999999999999999999999999999999999998852  22345678899999998  46778


Q ss_pred             cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeC
Q 044927          311 SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE  383 (467)
Q Consensus       311 tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDE  383 (467)
                      |++||+.+..   ..+.    +++.++++..++.+..++.|           .+||||||||++|||||+++|+++||||
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDE  153 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDE  153 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999996421   1222    23456667777766555443           6899999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH
Q 044927          384 ATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT  418 (467)
Q Consensus       384 pts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~  418 (467)
                      ||++||+.+++.+.+.|++.. +++|+|++||+++.
T Consensus       154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            999999999999999998864 47899999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=9.7e-42  Score=324.77  Aligned_cols=186  Identities=24%  Similarity=0.391  Sum_probs=156.9

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcc---ccccHHHhcCcC
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL---FRGSVRTNLDPL  319 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---f~~tv~enl~~~  319 (467)
                      |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     ..+++++|+||++.+   |+.|+.+|+.+.
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~   75 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG   75 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence            578999999999999999999999999999999999999998753     346789999999876   356999998532


Q ss_pred             C--------CC---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCC
Q 044927          320 G--------MY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI  388 (467)
Q Consensus       320 ~--------~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~L  388 (467)
                      .        ..   .++++.++++..++.++.+.           ...+||||||||++|||||+++|+++||||||++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L  144 (223)
T TIGR03771        76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-----------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL  144 (223)
T ss_pred             cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            1        01   12345566676666544433           33679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          389 DSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       389 D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |+.++..+.+.|++.. +++|+|++||+++.+.. ||+++++ +|++++.|+++++.+.
T Consensus       145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~  202 (223)
T TIGR03771       145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP  202 (223)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence            9999999999999864 48899999999998765 9999999 7999999999998653

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-41  Score=360.77  Aligned_cols=216  Identities=22%  Similarity=0.326  Sum_probs=171.8

Q ss_pred             cEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCH-HHHhc
Q 044927          220 RIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGL-KDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~~~~-~~~r~  296 (467)
                      .++++|++++|+.+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~  336 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA  336 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            59999999999421 23489999999999999999999999999999999999996 89999999999865443 45678


Q ss_pred             ccEEEcCCC---cccc-ccHHHhcCcCC--CC------CHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhHH
Q 044927          297 KLSIIPQEP---TLFR-GSVRTNLDPLG--MY------SDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQR  363 (467)
Q Consensus       297 ~i~~v~Q~~---~lf~-~tv~enl~~~~--~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq~  363 (467)
                      +++|+||++   .+|+ .|+++|+.+..  ..      ...+.     ...+.++++.+  ++.. ........||||||
T Consensus       337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk  409 (500)
T TIGR02633       337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ  409 (500)
T ss_pred             CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence            899999996   3665 59999996421  00      11110     11122333333  2221 23344578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~  441 (467)
                      ||++|||||+.+|++|||||||++||+.+...+++.++++. .+.|+|++||+++.+.. |||+++|++|+++..++.++
T Consensus       410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~  489 (500)
T TIGR02633       410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA  489 (500)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence            99999999999999999999999999999999999998853 48999999999998875 99999999999998876554


Q ss_pred             H
Q 044927          442 L  442 (467)
Q Consensus       442 l  442 (467)
                      +
T Consensus       490 ~  490 (500)
T TIGR02633       490 L  490 (500)
T ss_pred             C
Confidence            3

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.2e-42  Score=314.93  Aligned_cols=214  Identities=23%  Similarity=0.408  Sum_probs=183.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .+++++|+++|++  +.+++|+||++++|++.|++|||||||||.+++|+|+++|++|+|.++|.+++.    ..+.+||
T Consensus         2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG   75 (300)
T COG4152           2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG   75 (300)
T ss_pred             ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence            4899999999964  459999999999999999999999999999999999999999999999998863    4577899


Q ss_pred             EEcCCCccccc-cHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |+|.+--|++. ||.|-+.+++   ..+..++..-     +..|++++.  +-....++..+||.|.+|+|-+--|++++
T Consensus        76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHe  148 (300)
T COG4152          76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHE  148 (300)
T ss_pred             cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence            99999999865 9999997643   2344444332     345666653  22223455678999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |+++|||||+|||||.+.+.+.+.+.+.+ +|.|||++||+++.++. ||++++|++|+.|-+|+.+++.+..
T Consensus       149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~  221 (300)
T COG4152         149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF  221 (300)
T ss_pred             CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence            99999999999999999999999998864 59999999999999986 9999999999999999999987643

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=2.6e-41  Score=321.98  Aligned_cols=193  Identities=26%  Similarity=0.295  Sum_probs=155.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      +.++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...     ....+ 
T Consensus        23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~-   94 (224)
T cd03220          23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG-   94 (224)
T ss_pred             hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence            778899999964  4599999999999999999999999999999999999999999999999876321     11111 


Q ss_pred             EcCCCccccccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          301 IPQEPTLFRGSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                           ..+..|++||+.+..   ..+.+    ++.++++..++.+..+           ....+||||||||++||||++
T Consensus        95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral~  158 (224)
T cd03220          95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-----------LPVKTYSSGMKARLAFAIATA  158 (224)
T ss_pred             -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence                 123469999986321   11222    2334444444443332           334679999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      ++|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999999998863 46899999999998865 9999999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-41  Score=345.52  Aligned_cols=206  Identities=23%  Similarity=0.308  Sum_probs=169.3

Q ss_pred             cEEEEeEEEEeCCCC-CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          220 RIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~-~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      .++++|++|.|++.. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.            
T Consensus        21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------   88 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------   88 (549)
T ss_pred             eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence            589999999997532 3589999999999999999999999999999999999999999999999751            


Q ss_pred             EEEcCCCcccc-ccHHHhcCcCC---CCCHHH----HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFR-GSVRTNLDPLG---MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~-~tv~enl~~~~---~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                       ++++.+.+++ .|++||+.+..   ..+.++    +.++++.+++.+++++.           ...||||||||++|||
T Consensus        89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~-----------~~~LSGGQrQRVaLAr  156 (549)
T PRK13545         89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP-----------VKTYSSGMKSRLGFAI  156 (549)
T ss_pred             -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------cccCCHHHHHHHHHHH
Confidence             1222333433 49999986421   223322    33456666666555443           4789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccCch
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNSA  448 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~~  448 (467)
                      ||+.+|++|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++......
T Consensus       157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~  236 (549)
T PRK13545        157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE  236 (549)
T ss_pred             HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence            9999999999999999999999999999998864 47899999999999875 999999999999999999998764333


Q ss_pred             H
Q 044927          449 F  449 (467)
Q Consensus       449 ~  449 (467)
                      |
T Consensus       237 ~  237 (549)
T PRK13545        237 F  237 (549)
T ss_pred             H
Confidence            3

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.2e-40  Score=361.33  Aligned_cols=198  Identities=24%  Similarity=0.323  Sum_probs=166.7

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--ccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-cc
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE--NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GS  311 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~--~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t  311 (467)
                      +.+|+|+|+++++||++||+||||||||||+++|+|+.+|+  +|+|.+||+++.    ...++++|||+|++.+++ .|
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT  156 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT  156 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence            45999999999999999999999999999999999999985  899999999874    235667999999999986 49


Q ss_pred             HHHhcCcCC------CCCHHH----HHHHHHHcChHHHHHhCCCcccccccC-CCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          312 VRTNLDPLG------MYSDNE----IWEAMEKCQLKATISRLPMLLDSSVSD-EGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       312 v~enl~~~~------~~~~~~----~~~~~~~~~l~~~i~~l~~g~~t~v~~-~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      ++||+.+..      ..++++    +.+.++..++.       +..||.+|+ ....||||||||++|||||+.+|++|+
T Consensus       157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl  229 (659)
T PLN03211        157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI  229 (659)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence            999996421      122322    23334444332       335777765 467899999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH-H-hhcCEEEEEeCCEEEEecChhhHh
Q 044927          381 LDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT-I-TDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |||||+|||+.++..+.+.|+++. +|+|+|+++|+++. + +.||++++|++|++++.|+++++.
T Consensus       230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~  295 (659)
T PLN03211        230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM  295 (659)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence            999999999999999999999864 58999999999984 4 459999999999999999999885

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-41  Score=302.39  Aligned_cols=205  Identities=23%  Similarity=0.310  Sum_probs=172.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .+.+++++.+|++....+|+|+|++|.+||.+.++||||||||||+|+++|+.+|+.|+|.+||.+|..-..     .-|
T Consensus         3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg   77 (259)
T COG4525           3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG   77 (259)
T ss_pred             eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence            367789999997665669999999999999999999999999999999999999999999999999876433     358


Q ss_pred             EEcCCCcccc-ccHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      +|+|++-|++ .|+.||+.++-   ...+    +...+.+..+++.++-++.           ..+||||||||+.||||
T Consensus        78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----------i~qLSGGmrQRvGiARA  146 (259)
T COG4525          78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY-----------IWQLSGGMRQRVGIARA  146 (259)
T ss_pred             eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc-----------eEeecchHHHHHHHHHH
Confidence            9999999886 59999997642   1222    2234456667776655443           37899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChh
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPS  440 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~  440 (467)
                      |..+|++|+||||+++||.-|++.+++.+-+..  .|+.+++|||+++++-. ++|++||+-  |+|++.=+++
T Consensus       147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence            999999999999999999999999999998743  48999999999998765 999999984  7999865543

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.7e-41  Score=313.54  Aligned_cols=188  Identities=18%  Similarity=0.333  Sum_probs=158.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++  +.++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ++.++|
T Consensus         2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~   74 (195)
T PRK13541          2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY   74 (195)
T ss_pred             eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence            789999999953  3345 599999999999999999999999999999999999999999999876532    346999


Q ss_pred             EcCCCcc-ccccHHHhcCcCCC--CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          301 IPQEPTL-FRGSVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       301 v~Q~~~l-f~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      ++|++.+ |..|++||+.+...  ..++++.++++.+++.+..++           .+.+||||||||++||||++++|+
T Consensus        75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rl~la~al~~~p~  143 (195)
T PRK13541         75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGMQKIVAIARLIACQSD  143 (195)
T ss_pred             ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence            9998765 56799999964221  134456667777777655443           347899999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEE
Q 044927          378 ILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFM  426 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~  426 (467)
                      ++||||||++||+.+++.+.+.+++. .+++|+|++||+++.++.||-+.
T Consensus       144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~  193 (195)
T PRK13541        144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ  193 (195)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence            99999999999999999999999753 45899999999999999988763

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3.2e-41  Score=357.87  Aligned_cols=210  Identities=21%  Similarity=0.351  Sum_probs=171.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i  298 (467)
                      .++++|+++       .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+++
T Consensus       257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i  329 (501)
T PRK10762        257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI  329 (501)
T ss_pred             EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence            589999984       269999999999999999999999999999999999999999999999998766543 457789


Q ss_pred             EEEcCCC---cccc-ccHHHhcCcCCC---------CCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 044927          299 SIIPQEP---TLFR-GSVRTNLDPLGM---------YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ  364 (467)
Q Consensus       299 ~~v~Q~~---~lf~-~tv~enl~~~~~---------~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~Q  364 (467)
                      ||+||++   .+|. .|+.||+.+...         ....+..     ..+.+++..+  |+. ........+|||||||
T Consensus       330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq  402 (501)
T PRK10762        330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ  402 (501)
T ss_pred             EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence            9999997   3554 599999964210         1111110     1122333333  232 2344556789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|+++..|+++++
T Consensus       403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            9999999999999999999999999999999999999864 48899999999998875 999999999999999998875


Q ss_pred             h
Q 044927          443 M  443 (467)
Q Consensus       443 ~  443 (467)
                      .
T Consensus       483 ~  483 (501)
T PRK10762        483 T  483 (501)
T ss_pred             C
Confidence            3

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-41  Score=356.87  Aligned_cols=211  Identities=23%  Similarity=0.318  Sum_probs=170.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i  298 (467)
                      .++++|+++.      .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. ...++++
T Consensus       257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i  330 (501)
T PRK11288        257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI  330 (501)
T ss_pred             EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence            5899999832      38999999999999999999999999999999999999999999999998865443 3456789


Q ss_pred             EEEcCCCc---ccc-ccHHHhcCcCCC---------CCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 044927          299 SIIPQEPT---LFR-GSVRTNLDPLGM---------YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ  364 (467)
Q Consensus       299 ~~v~Q~~~---lf~-~tv~enl~~~~~---------~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~Q  364 (467)
                      +|+||++.   +|. .|+.||+.+...         ....+..     ....+++..+  |++ ........+|||||||
T Consensus       331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q  403 (501)
T PRK11288        331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSL--NIKTPSREQLIMNLSGGNQQ  403 (501)
T ss_pred             EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhc--CcccCCccCccccCCHHHHH
Confidence            99999973   554 699999864211         0111100     1122333333  231 2234445789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|++||+++.+.. ||++++|++|++++.|++++.
T Consensus       404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~  483 (501)
T PRK11288        404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA  483 (501)
T ss_pred             HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence            9999999999999999999999999999999999998864 48999999999999875 999999999999999998876


Q ss_pred             h
Q 044927          443 M  443 (467)
Q Consensus       443 ~  443 (467)
                      .
T Consensus       484 ~  484 (501)
T PRK11288        484 T  484 (501)
T ss_pred             C
Confidence            4

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-41  Score=316.29  Aligned_cols=195  Identities=23%  Similarity=0.333  Sum_probs=175.4

Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcccEEEcCCCccccc-cHHH
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDLRTKLSIIPQEPTLFRG-SVRT  314 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~i~~v~Q~~~lf~~-tv~e  314 (467)
                      +++|+.+...++||-|+||||||||+|+|+|+..|++|+|.+||.-+.+.+    ...-+++|||||||..||+- ||+.
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            688888887899999999999999999999999999999999998775442    33447889999999999975 9999


Q ss_pred             hcCcCCCC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927          315 NLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD  393 (467)
Q Consensus       315 nl~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~  393 (467)
                      |++++... ...+..+++...|+.+.+++.|           .+|||||||||+|+|||+.+|++|++|||.|+||...+
T Consensus        96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK  164 (352)
T COG4148          96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK  164 (352)
T ss_pred             chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence            99976543 4567888999999999999999           78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          394 AILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       394 ~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ++++-.++++.+  +.-+++|||.++++.. ||+|++|++|++.+.|+.+++++.
T Consensus       165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~  219 (352)
T COG4148         165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS  219 (352)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence            999999988754  5789999999998765 999999999999999999999864

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-40  Score=354.58  Aligned_cols=201  Identities=17%  Similarity=0.304  Sum_probs=170.9

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           +++
T Consensus       318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i  384 (530)
T PRK15064        318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI  384 (530)
T ss_pred             ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence            36999999999964  34899999999999999999999999999999999999999999999872           479


Q ss_pred             EEEcCCCc--ccc-ccHHHhcCcCC--CCCHHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          299 SIIPQEPT--LFR-GSVRTNLDPLG--MYSDNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       299 ~~v~Q~~~--lf~-~tv~enl~~~~--~~~~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ||+||++.  ++. .|+++|+....  ...++++.+.++..++. +..++           ...+||||||||++||||+
T Consensus       385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq~qrv~la~al  453 (530)
T PRK15064        385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKK-----------SVKVLSGGEKGRMLFGKLM  453 (530)
T ss_pred             EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcC-----------cccccCHHHHHHHHHHHHH
Confidence            99999974  443 59999985321  12344566677777662 33333           3478999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-EecChhhHhcc
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-EYDLPSKLMET  445 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~~~  445 (467)
                      +.+|++|||||||++||+.+...+.+.|++.  +.|+|+|||+++.+.. |||+++|++|+++ ..|+++++++.
T Consensus       454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence            9999999999999999999999999999886  4599999999999876 9999999999998 78998887654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-40  Score=353.43  Aligned_cols=207  Identities=21%  Similarity=0.309  Sum_probs=164.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|++++|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           .+++|
T Consensus         2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~   68 (530)
T PRK15064          2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK   68 (530)
T ss_pred             EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence            789999999963  35999999999999999999999999999999999999999999999872           36999


Q ss_pred             EcCCCccccc-cHHHhcCcCCC-C-------------C---HH---HHHHHH----------HHcChHHHHHhCCCcccc
Q 044927          301 IPQEPTLFRG-SVRTNLDPLGM-Y-------------S---DN---EIWEAM----------EKCQLKATISRLPMLLDS  349 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~~-~-------------~---~~---~~~~~~----------~~~~l~~~i~~l~~g~~t  349 (467)
                      ++|++.+|.. |++||+.+... .             .   .+   .+.+..          ....+.+.+..+  |++.
T Consensus        69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~  146 (530)
T PRK15064         69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE  146 (530)
T ss_pred             EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence            9999988765 99999853210 0             0   00   000000          001122233332  3322


Q ss_pred             cc-cCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEE
Q 044927          350 SV-SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMV  427 (467)
Q Consensus       350 ~v-~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~v  427 (467)
                      .. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+  .+.|||+|||+++.+.. ||+|++
T Consensus       147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~  224 (530)
T PRK15064        147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD  224 (530)
T ss_pred             hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence            22 234578999999999999999999999999999999999999999999975  37899999999998875 999999


Q ss_pred             EeCCEE-EEecChhhHhc
Q 044927          428 LSYGEL-VEYDLPSKLME  444 (467)
Q Consensus       428 l~~G~i-v~~g~~~~l~~  444 (467)
                      |++|++ ++.|++++.++
T Consensus       225 l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        225 LDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             EeCCEEEEecCCHHHHHH
Confidence            999999 47899988764

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=2e-40  Score=333.08  Aligned_cols=210  Identities=24%  Similarity=0.353  Sum_probs=174.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i  298 (467)
                      .+++++++++|++  ..+++||||++++||+.||+|+||||||||+++|.|+|+|++|+|++||++++--++. ..|..|
T Consensus         4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI   81 (501)
T COG3845           4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI   81 (501)
T ss_pred             eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence            5899999999973  4589999999999999999999999999999999999999999999999999876665 567789


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCCC------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      |+|.|++.|++. ||.|||..+...      +..+..+-     +.+..+++  |++-...+....||-|||||+.|-+|
T Consensus        82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~-----i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa  154 (501)
T COG3845          82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-----IKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA  154 (501)
T ss_pred             cEEeeccccccccchhhhhhhcCccccccccCHHHHHHH-----HHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence            999999999976 999999654321      22222111     12222222  33333344557799999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~  438 (467)
                      |+++|++||||||||-|-|...+.+.+.++++. .|+|||+|||++.++.. |||+-||.+|+++..-+
T Consensus       155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            999999999999999999999999999999864 59999999999999886 99999999999876554

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.5e-40  Score=353.37  Aligned_cols=210  Identities=21%  Similarity=0.359  Sum_probs=171.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i  298 (467)
                      .++++|+++       .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus       268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i  340 (510)
T PRK15439        268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL  340 (510)
T ss_pred             eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence            589999983       1599999999999999999999999999999999999999999999999988766554 45689


Q ss_pred             EEEcCCC---cccc-ccHHHhcCcC-----CCC-CHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHHHHHH
Q 044927          299 SIIPQEP---TLFR-GSVRTNLDPL-----GMY-SDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       299 ~~v~Q~~---~lf~-~tv~enl~~~-----~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~Qrl~  367 (467)
                      +|+||++   .+|. .|+.+|+...     ... ...+.+     ..+.+++..+  |+. .........||||||||++
T Consensus       341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~  413 (510)
T PRK15439        341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL  413 (510)
T ss_pred             EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence            9999985   3665 4999998421     000 111111     1122334433  333 2344556789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. |||+++|++|+++..|+++++.
T Consensus       414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  491 (510)
T PRK15439        414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN  491 (510)
T ss_pred             HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence            9999999999999999999999999999999998863 48999999999999876 9999999999999999998775

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.8e-40  Score=332.86  Aligned_cols=180  Identities=27%  Similarity=0.399  Sum_probs=154.2

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHHhcCcCC---CCCH----
Q 044927          253 VVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----  324 (467)
Q Consensus       253 ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~~----  324 (467)
                      |+||||||||||+++|+|+++|++|+|.++|.++...+.  .+++++|+||++.+|+. |++||+.+..   ..+.    
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            689999999999999999999999999999999876654  36789999999999975 9999997431   1222    


Q ss_pred             HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC
Q 044927          325 NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF  404 (467)
Q Consensus       325 ~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~  404 (467)
                      +++.++++..++.++.++.|           .+||||||||++|||||+++|++|||||||++||+.++..+.+.|++..
T Consensus        79 ~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~  147 (325)
T TIGR01187        79 PRVLEALRLVQLEEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ  147 (325)
T ss_pred             HHHHHHHHHcCCcchhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence            23455666666655554443           7899999999999999999999999999999999999999999998864


Q ss_pred             --CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          405 --PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       405 --~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                        .++|+|+|||+++.+.. ||||++|++|++++.|+++++...
T Consensus       148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~  191 (325)
T TIGR01187       148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE  191 (325)
T ss_pred             HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence              37999999999998765 999999999999999999999764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=5.7e-40  Score=352.17  Aligned_cols=208  Identities=25%  Similarity=0.353  Sum_probs=166.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +.++|
T Consensus         6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~   73 (556)
T PRK11819          6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG   73 (556)
T ss_pred             EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence            59999999999622 4599999999999999999999999999999999999999999999975           14699


Q ss_pred             EEcCCCccccc-cHHHhcCcCC-CC----------------CH----------HHHHHHHHHcC-------hHHHHHhCC
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG-MY----------------SD----------NEIWEAMEKCQ-------LKATISRLP  344 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~-~~----------------~~----------~~~~~~~~~~~-------l~~~i~~l~  344 (467)
                      ||||+|.+++. |+.||+.+.. .+                ..          .++.+.++.++       +.+.++.+ 
T Consensus        74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  152 (556)
T PRK11819         74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL-  152 (556)
T ss_pred             EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence            99999998865 9999986421 00                00          01111111111       22233332 


Q ss_pred             CcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cC
Q 044927          345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SD  423 (467)
Q Consensus       345 ~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d  423 (467)
                       |++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++..  .|+|+|||+++.+.. ||
T Consensus       153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d  228 (556)
T PRK11819        153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAG  228 (556)
T ss_pred             -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence             232 2345567899999999999999999999999999999999999999999998863  599999999999876 99


Q ss_pred             EEEEEeCCEEE-EecChhhHhc
Q 044927          424 MFMVLSYGELV-EYDLPSKLME  444 (467)
Q Consensus       424 ~i~vl~~G~iv-~~g~~~~l~~  444 (467)
                      +|++|++|+++ ..|+++++.+
T Consensus       229 ~i~~l~~g~i~~~~g~~~~~~~  250 (556)
T PRK11819        229 WILELDRGRGIPWEGNYSSWLE  250 (556)
T ss_pred             eEEEEeCCEEEEecCCHHHHHH
Confidence            99999999986 7888887653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=6.9e-40  Score=316.06  Aligned_cols=192  Identities=26%  Similarity=0.325  Sum_probs=155.2

Q ss_pred             EEeCCCCCceecceeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927          228 VRYRPNTPLVLKGITCTFK-----EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP  302 (467)
Q Consensus       228 ~~y~~~~~~~L~~isl~i~-----~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~  302 (467)
                      |+|++.. ..+++++|+++     +||+++|+||||||||||+++|+|+++|++|+|.++|.            .++|+|
T Consensus         1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~   67 (246)
T cd03237           1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP   67 (246)
T ss_pred             CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence            4576443 37888888886     79999999999999999999999999999999999984            599999


Q ss_pred             CCCcc-ccccHHHhcCcCC-CC-C-HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          303 QEPTL-FRGSVRTNLDPLG-MY-S-DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       303 Q~~~l-f~~tv~enl~~~~-~~-~-~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      |++.. +..|++||+.... .. . .....++++..++.+..+           ....+||||||||++|||||+.+|++
T Consensus        68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~l  136 (246)
T cd03237          68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADI  136 (246)
T ss_pred             ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99874 6789999985321 11 1 222345566666554433           34478999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEE--EecChhhHh
Q 044927          379 LVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELV--EYDLPSKLM  443 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv--~~g~~~~l~  443 (467)
                      +||||||++||+.++..+.+.|++..  .++|+|+|||+++.+.. ||++++|+++..+  ..++|.++.
T Consensus       137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~  206 (246)
T cd03237         137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR  206 (246)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence            99999999999999999999999864  37999999999999885 9999999775443  455666654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=7.6e-40  Score=380.01  Aligned_cols=211  Identities=23%  Similarity=0.355  Sum_probs=178.7

Q ss_pred             cEEEEeEEEEeC--CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHH
Q 044927          220 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE---PENGRILIDGLDICSMGLKDL  294 (467)
Q Consensus       220 ~i~~~~vs~~y~--~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~  294 (467)
                      .++++||++.|+  ++.+.+|+|+|+++++||++||+||||||||||+++|+|+.+   |++|+|.+||+++.    ..+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~  834 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF  834 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence            479999999995  233569999999999999999999999999999999999998   78899999999884    257


Q ss_pred             hcccEEEcCCCcc-ccccHHHhcCcCC------CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          295 RTKLSIIPQEPTL-FRGSVRTNLDPLG------MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       295 r~~i~~v~Q~~~l-f~~tv~enl~~~~------~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      |+.+|||+|++.+ +..||+||+.+..      ..+++    .+.++++..++.+       ..|+.+|+.+.+||||||
T Consensus       835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr  907 (1394)
T TIGR00956       835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR  907 (1394)
T ss_pred             hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence            8899999998765 4569999996421      12332    2445566555543       367888888889999999


Q ss_pred             HHHHHHHHhcCCCC-EEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHH--hhcCEEEEEeCC-EEEEecC
Q 044927          364 QLFCLGRVLLKRNR-ILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTI--TDSDMFMVLSYG-ELVEYDL  438 (467)
Q Consensus       364 Qrl~iARal~~~p~-iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~--~~~d~i~vl~~G-~iv~~g~  438 (467)
                      ||++|||||+.+|+ +|+|||||||||+.+...+++.|++. .+|+|+|+++|+++..  ..+|++++|++| ++++.|+
T Consensus       908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~  987 (1394)
T TIGR00956       908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD  987 (1394)
T ss_pred             hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence            99999999999997 99999999999999999999999986 4689999999999863  569999999997 9999998


Q ss_pred             hhh
Q 044927          439 PSK  441 (467)
Q Consensus       439 ~~~  441 (467)
                      +.+
T Consensus       988 ~~~  990 (1394)
T TIGR00956       988 LGE  990 (1394)
T ss_pred             ccc
Confidence            743

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=8.9e-40  Score=350.53  Aligned_cols=208  Identities=25%  Similarity=0.329  Sum_probs=169.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +..||
T Consensus         4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~   71 (552)
T TIGR03719         4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG   71 (552)
T ss_pred             EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence            48999999999622 3599999999999999999999999999999999999999999999975           24699


Q ss_pred             EEcCCCccccc-cHHHhcCcCC-C-----------------CCH---------HHHHHHHHHcChH-------HHHHhCC
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLG-M-----------------YSD---------NEIWEAMEKCQLK-------ATISRLP  344 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~-~-----------------~~~---------~~~~~~~~~~~l~-------~~i~~l~  344 (467)
                      ||||+|.+++. |++||+.+.. .                 ..+         .++.++++.++..       +.+..+ 
T Consensus        72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  150 (552)
T TIGR03719        72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL-  150 (552)
T ss_pred             EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence            99999998864 9999996421 0                 001         1233344444432       223332 


Q ss_pred             CcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cC
Q 044927          345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SD  423 (467)
Q Consensus       345 ~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d  423 (467)
                       |++. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.  +.|+|+|||+++.+.. ||
T Consensus       151 -~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d  226 (552)
T TIGR03719       151 -RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAG  226 (552)
T ss_pred             -CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence             3321 34556789999999999999999999999999999999999999999999876  3599999999999886 99


Q ss_pred             EEEEEeCCEEE-EecChhhHhc
Q 044927          424 MFMVLSYGELV-EYDLPSKLME  444 (467)
Q Consensus       424 ~i~vl~~G~iv-~~g~~~~l~~  444 (467)
                      ++++|++|+++ ..|++++..+
T Consensus       227 ~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       227 WILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             eEEEEECCEEEEecCCHHHHHH
Confidence            99999999976 7799887654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.2e-40  Score=346.02  Aligned_cols=212  Identities=19%  Similarity=0.324  Sum_probs=168.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i  298 (467)
                      .|+++|+++.|    +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.+
T Consensus       250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i  325 (491)
T PRK10982        250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF  325 (491)
T ss_pred             EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence            59999999975    2389999999999999999999999999999999999999999999999999876654 346779


Q ss_pred             EEEcCCCc---ccc-ccHHHhc-----CcC-CC---CCHHHHHHHHHHcChHHHHHhCCCccc-ccccCCCCCCChhHHH
Q 044927          299 SIIPQEPT---LFR-GSVRTNL-----DPL-GM---YSDNEIWEAMEKCQLKATISRLPMLLD-SSVSDEGENWSVGQRQ  364 (467)
Q Consensus       299 ~~v~Q~~~---lf~-~tv~enl-----~~~-~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~-t~v~~~g~~LSgGq~Q  364 (467)
                      +|+||++.   +|. .|+.+|.     ... ..   .+..+..+     ...+.+..+  ++. ........+|||||||
T Consensus       326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q  398 (491)
T PRK10982        326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ  398 (491)
T ss_pred             EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence            99999863   555 4776663     211 00   11111111     122333333  221 1234556789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |++||||++.+|+||||||||++||+.+...+++.++++. .++|+|++||+++.+.. |||+++|++|+++..++.++.
T Consensus       399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~  478 (491)
T PRK10982        399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT  478 (491)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence            9999999999999999999999999999999999998853 58999999999998875 999999999999988876533

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=1.9e-39  Score=287.98  Aligned_cols=143  Identities=33%  Similarity=0.526  Sum_probs=133.7

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++|++++|++.  ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.           ..++|
T Consensus         1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~   67 (144)
T cd03221           1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY   67 (144)
T ss_pred             CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence            4789999999643  5999999999999999999999999999999999999999999999984           47999


Q ss_pred             EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      +||                                                      ||+||+||++||||++++|+++|
T Consensus        68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill   93 (144)
T cd03221          68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL   93 (144)
T ss_pred             Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence            998                                                      89999999999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          381 LDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      |||||++||+.+...+.+.+++.  ++|+|++||+++.+.. ||++++|++|+
T Consensus        94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999886  4799999999999865 89999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=4.2e-40  Score=318.93  Aligned_cols=200  Identities=24%  Similarity=0.346  Sum_probs=157.2

Q ss_pred             EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHH
Q 044927          224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK  292 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~  292 (467)
                      .||+++|+++ ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|.           ++|+++.+....
T Consensus         4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~   81 (255)
T cd03236           4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK   81 (255)
T ss_pred             cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence            4788999643 358999994 999999999999999999999999999999999996           788887655333


Q ss_pred             HHhc--ccEEEcCCCccccccHHHhcCcC-CCC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          293 DLRT--KLSIIPQEPTLFRGSVRTNLDPL-GMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       293 ~~r~--~i~~v~Q~~~lf~~tv~enl~~~-~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      ..+.  .+++++|.+.+++.++.+|+... ... .++.+.++++..++.+.           ......+||||||||++|
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l  150 (255)
T cd03236          82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVAI  150 (255)
T ss_pred             hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence            2332  47899888776654544444211 111 12345556666655443           334557899999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEec
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYD  437 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g  437 (467)
                      |||++.+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+|++|+ |++.+.|
T Consensus       151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~  220 (255)
T cd03236         151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG  220 (255)
T ss_pred             HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence            999999999999999999999999999999998864 47999999999999885 99999995 6676544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=1.2e-39  Score=308.16  Aligned_cols=185  Identities=20%  Similarity=0.260  Sum_probs=149.3

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-EcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHH
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRT  314 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~e  314 (467)
                      +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+             .+.|++.+|+. |++|
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e   68 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE   68 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence            79999999999999999999999999999999999999999997 777532             13356677765 9999


Q ss_pred             hcCcCC---CCCHHHHHHHH-HHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927          315 NLDPLG---MYSDNEIWEAM-EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS  390 (467)
Q Consensus       315 nl~~~~---~~~~~~~~~~~-~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~  390 (467)
                      |+.+..   ..+.++..+.+ +..++.+.       +++    ....||||||||++||||++.+|+++||||||+++|+
T Consensus        69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~  137 (213)
T PRK15177         69 NARMMASLYGLDGDEFSHFCYQLTQLEQC-------YTD----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN  137 (213)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhChhHH-------hhc----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence            996421   22333332222 22233222       222    3366999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhcc
Q 044927          391 ATDAILQRIIREEFPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       391 ~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      .+++.+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+.++..+.
T Consensus       138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  193 (213)
T PRK15177        138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL  193 (213)
T ss_pred             HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence            999999998866555689999999999986 5999999999999999998887643

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=6.8e-40  Score=355.00  Aligned_cols=202  Identities=22%  Similarity=0.323  Sum_probs=169.6

Q ss_pred             CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-
Q 044927          234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-  309 (467)
Q Consensus       234 ~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-  309 (467)
                      ++++|+|+|+++++||.++|+||||||||||+++|+|..+|.   +|+|.+||.++.   ...+|+.+|||+|++.+++ 
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~  113 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT  113 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence            456999999999999999999999999999999999999885   799999999875   3567889999999999886 


Q ss_pred             ccHHHhcCcCC------CCCHHHHHHHHHHcChHHHHHhC--CCcccccccCC--CCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          310 GSVRTNLDPLG------MYSDNEIWEAMEKCQLKATISRL--PMLLDSSVSDE--GENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       310 ~tv~enl~~~~------~~~~~~~~~~~~~~~l~~~i~~l--~~g~~t~v~~~--g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      .||+||+.+..      ..+.++.     ...+++.++.+  ++..||.+|+.  +..||||||||++|||||+.+|+++
T Consensus       114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl  188 (617)
T TIGR00955       114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL  188 (617)
T ss_pred             CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence            49999996421      1122221     11123333332  34578999974  4789999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChh-H-HhhcCEEEEEeCCEEEEecChhhHh
Q 044927          380 VLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVP-T-ITDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +|||||+|||+.+...+.+.+++.. +|+|+|+++|+++ . .+.||++++|++|++++.|+++++.
T Consensus       189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~  255 (617)
T TIGR00955       189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV  255 (617)
T ss_pred             EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence            9999999999999999999999864 4899999999996 4 4569999999999999999999874

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=8.3e-40  Score=346.36  Aligned_cols=206  Identities=21%  Similarity=0.281  Sum_probs=165.4

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCC-CCHHHHhc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS-MGLKDLRT  296 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~-~~~~~~r~  296 (467)
                      ..++++|+++.|++  ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|+++|.++.. ......|+
T Consensus       259 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~  336 (490)
T PRK10938        259 PRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK  336 (490)
T ss_pred             ceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence            35999999999964  3489999999999999999999999999999999999876 69999999987632 23345678


Q ss_pred             ccEEEcCCCcccc---ccHHHhcCcC--C------CCCH---HHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChh
Q 044927          297 KLSIIPQEPTLFR---GSVRTNLDPL--G------MYSD---NEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVG  361 (467)
Q Consensus       297 ~i~~v~Q~~~lf~---~tv~enl~~~--~------~~~~---~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgG  361 (467)
                      +++|++|++.++.   .++.+++...  .      ....   +++.++++.+++.+ ..+           ....+||||
T Consensus       337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG  405 (490)
T PRK10938        337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-----------APFHSLSWG  405 (490)
T ss_pred             hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-----------CchhhCCHH
Confidence            8999999986542   3677665321  0      0111   23445556655543 322           334789999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CC-ceEEEEccChhHHhh--cCEEEEEeCCEEEEec
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PG-STVITVAHRVPTITD--SDMFMVLSYGELVEYD  437 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g  437 (467)
                      ||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++ .|+|++||+++.+..  ||++++|++|+|++.-
T Consensus       406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            9999999999999999999999999999999999999999864 34 479999999999863  8999999999998754

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-38  Score=295.26  Aligned_cols=207  Identities=23%  Similarity=0.291  Sum_probs=172.0

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTK  297 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~  297 (467)
                      .-|+++||++.|.+  +++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|++
T Consensus        30 ~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~  107 (257)
T COG1119          30 PLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR  107 (257)
T ss_pred             ceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence            45999999999954  459999999999999999999999999999999999999999999999999887776 899999


Q ss_pred             cEEEcCCCc---cccccHHHhcC--cC------C-CCCHHH---HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          298 LSIIPQEPT---LFRGSVRTNLD--PL------G-MYSDNE---IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       298 i~~v~Q~~~---lf~~tv~enl~--~~------~-~~~~~~---~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      ||+|+-+-.   .-+.+++|-+.  ++      . .+++++   ....++.+++.+..++           .-..||-||
T Consensus       108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-----------~~~~LS~Ge  176 (257)
T COG1119         108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-----------PFGSLSQGE  176 (257)
T ss_pred             hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC-----------chhhcCHhH
Confidence            999976432   22346777663  11      1 233333   3345566666553333           347899999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC---CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF---PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~  438 (467)
                      |||+.|||||+.+|++||||||++|||...++.+.+.+.+..   .+.++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus       177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence            999999999999999999999999999999999999998863   26799999999999887 69999999999998874

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-38  Score=341.92  Aligned_cols=199  Identities=21%  Similarity=0.325  Sum_probs=164.8

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..|+++||++.|++  +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++.           .++
T Consensus       311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i  377 (638)
T PRK10636        311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL  377 (638)
T ss_pred             ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence            35999999999964  35999999999999999999999999999999999999999999999741           269


Q ss_pred             EEEcCCC--cccc-ccHHHhcCc-CCCCCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          299 SIIPQEP--TLFR-GSVRTNLDP-LGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       299 ~~v~Q~~--~lf~-~tv~enl~~-~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      ||++|++  .++. .|+.+++.. ......+++.+.++..++.. ...           .....||||||||++||||++
T Consensus       378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGekqRl~La~~l~  446 (638)
T PRK10636        378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVT-----------EETRRFSGGEKARLVLALIVW  446 (638)
T ss_pred             EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhc-----------CchhhCCHHHHHHHHHHHHHh
Confidence            9999985  3433 378887632 11222345556666665532 222           234789999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-EecChhhHh
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-EYDLPSKLM  443 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~  443 (467)
                      .+|++|||||||++||+.+...+.+.|++. . .|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus       447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            999999999999999999999999999887 3 499999999999875 9999999999997 788888763

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=4.4e-38  Score=337.57  Aligned_cols=201  Identities=20%  Similarity=0.251  Sum_probs=164.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..++++||++.|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +          .++
T Consensus       323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i  389 (556)
T PRK11819        323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL  389 (556)
T ss_pred             eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence            36999999999964  3599999999999999999999999999999999999999999999954 2          159


Q ss_pred             EEEcCCC-cccc-ccHHHhcCcCCC---C--CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          299 SIIPQEP-TLFR-GSVRTNLDPLGM---Y--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       299 ~~v~Q~~-~lf~-~tv~enl~~~~~---~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||+||++ .++. .|++||+.+...   .  .+.+...+++..++.+.          ........||||||||++||||
T Consensus       390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~a  459 (556)
T PRK11819        390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKT  459 (556)
T ss_pred             EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence            9999997 5655 499999964211   1  12233344555554211          1223347899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeC-CEEE-EecChhhHhc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSY-GELV-EYDLPSKLME  444 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~-G~iv-~~g~~~~l~~  444 (467)
                      ++.+|++|||||||++||+.+...+.+.|++..  .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.+
T Consensus       460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~  533 (556)
T PRK11819        460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE  533 (556)
T ss_pred             HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence            999999999999999999999999999998863  489999999998876 999999996 7886 4788877654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=5.1e-38  Score=336.92  Aligned_cols=200  Identities=21%  Similarity=0.254  Sum_probs=162.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..++++|++++|++  +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +          .+|
T Consensus       321 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i  387 (552)
T TIGR03719       321 KVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL  387 (552)
T ss_pred             eEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence            35999999999964  3599999999999999999999999999999999999999999999954 2          159


Q ss_pred             EEEcCCCc-ccc-ccHHHhcCcCCC---CC--HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          299 SIIPQEPT-LFR-GSVRTNLDPLGM---YS--DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       299 ~~v~Q~~~-lf~-~tv~enl~~~~~---~~--~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||+||++. ++. .|+.||+.+...   ..  +.+..++++..++.+.          .......+||||||||++||||
T Consensus       388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~a  457 (552)
T TIGR03719       388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKT  457 (552)
T ss_pred             EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence            99999973 554 599999964211   11  2223344444444211          1233447899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeC-CEEE-EecChhhHh
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSY-GELV-EYDLPSKLM  443 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~-G~iv-~~g~~~~l~  443 (467)
                      |+.+|++|||||||++||+.+...+.+.|++..  .|+|+|||+++.+.. ||+|++|++ |+++ ..|+.++..
T Consensus       458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~  530 (552)
T TIGR03719       458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE  530 (552)
T ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence            999999999999999999999999999999873  489999999999876 999999997 5876 557776654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=2.6e-38  Score=289.04  Aligned_cols=151  Identities=27%  Similarity=0.315  Sum_probs=133.9

Q ss_pred             EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcC
Q 044927          224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ  303 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q  303 (467)
                      .|++++|++  ..++++. |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+            ++|++|
T Consensus         4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q   68 (177)
T cd03222           4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ   68 (177)
T ss_pred             CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence            588999964  3588884 9999999999999999999999999999999999999999953            788888


Q ss_pred             CCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeC
Q 044927          304 EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE  383 (467)
Q Consensus       304 ~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDE  383 (467)
                      ++.                                                   ||||||||++||||++.+|++++|||
T Consensus        69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE   97 (177)
T cd03222          69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE   97 (177)
T ss_pred             cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            653                                                   89999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEe--cChh
Q 044927          384 ATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEY--DLPS  440 (467)
Q Consensus       384 pts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~--g~~~  440 (467)
                      ||++||+.+.+.+.+.+++.. + ++|+|++||+++.+.. ||++++|+++-.+.+  |.|.
T Consensus        98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222          98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence            999999999999999998863 3 4899999999999885 999999998766533  5544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.2e-38  Score=286.96  Aligned_cols=217  Identities=25%  Similarity=0.332  Sum_probs=177.8

Q ss_pred             EEEeEEEEeCC---CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          222 ELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       222 ~~~~vs~~y~~---~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      .++|..+.+.+   ..+++|+++|++|++|+++-|+|.||||||||++.|+|-..|++|+|.|||.|+..++.......+
T Consensus         3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l   82 (263)
T COG1101           3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL   82 (263)
T ss_pred             ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence            34455555532   234699999999999999999999999999999999999999999999999999999998888889


Q ss_pred             EEEcCCCc--cc-cccHHHhcCcCC------CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          299 SIIPQEPT--LF-RGSVRTNLDPLG------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       299 ~~v~Q~~~--lf-~~tv~enl~~~~------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +-|+|||.  .+ +.||.||+....      ..+...-  .-.+....+.+..+|.|++..++++..-|||||||-++++
T Consensus        83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln--~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~  160 (263)
T COG1101          83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN--ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL  160 (263)
T ss_pred             HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhh--HHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence            99999996  34 459999995311      1111100  0111223356778899999999999999999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChh
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~  440 (467)
                      .|.++.|+||+|||-|++|||.+...+++.-.+.  ..+-|.+||||+++.+- +-+|.++|++|+|+.+-+-+
T Consensus       161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~  234 (263)
T COG1101         161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE  234 (263)
T ss_pred             HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence            9999999999999999999999999998887764  23679999999998755 57999999999999765433

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=6.3e-38  Score=342.05  Aligned_cols=198  Identities=18%  Similarity=0.265  Sum_probs=162.6

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..++++||++.|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +.+|
T Consensus       507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i  574 (718)
T PLN03073        507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM  574 (718)
T ss_pred             ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence            369999999999643 3589999999999999999999999999999999999999999999875           2469


Q ss_pred             EEEcCCCccccccHHHhcC--c---CCCCCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          299 SIIPQEPTLFRGSVRTNLD--P---LGMYSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       299 ~~v~Q~~~lf~~tv~enl~--~---~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      ||++|++. ...++.+|..  +   .....++++.++++..++.+ ...+           ....||||||||++||||+
T Consensus       575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~-----------~~~~LSgGqkqRvaLAraL  642 (718)
T PLN03073        575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGGQKSRVAFAKIT  642 (718)
T ss_pred             EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcC-----------CccccCHHHHHHHHHHHHH
Confidence            99999863 2223444421  1   12234566777778777753 2222           3478999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-EecChhhH
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-EYDLPSKL  442 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l  442 (467)
                      +.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||+++.+.. ||++++|++|+++ ..|++++.
T Consensus       643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            9999999999999999999999999988775 3 499999999999886 9999999999998 66776654

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=7.7e-38  Score=281.74  Aligned_cols=154  Identities=40%  Similarity=0.620  Sum_probs=143.5

Q ss_pred             EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927          223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP  302 (467)
Q Consensus       223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~  302 (467)
                      ++|++|.|++.  ++++++||++++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++.++|++
T Consensus         2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~   79 (157)
T cd00267           2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP   79 (157)
T ss_pred             eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence            68999999643  5999999999999999999999999999999999999999999999999988776777888999999


Q ss_pred             CCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEee
Q 044927          303 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD  382 (467)
Q Consensus       303 Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLD  382 (467)
                      |                                                      |||||+||++||||++.+|++++||
T Consensus        80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD  105 (157)
T cd00267          80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD  105 (157)
T ss_pred             e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9                                                      8999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          383 EATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       383 Epts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      |||++||+.+...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus       106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            99999999999999999988643 6899999999999987 69999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=4.8e-38  Score=307.34  Aligned_cols=224  Identities=24%  Similarity=0.387  Sum_probs=184.2

Q ss_pred             cEEEEeEEEEeC--CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHH
Q 044927          220 RIELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-----ENGRILIDGLDICSMGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~--~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-----~~G~i~i~g~~i~~~~~~  292 (467)
                      -++++|+|+.|.  +....+++++||+|++||++|+||+||||||-..+.++|+++-     .+|+|.++|.|+-..+.+
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~   85 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER   85 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence            489999999984  3345689999999999999999999999999999999999965     479999999999999888


Q ss_pred             HHhc----ccEEEcCCCcc--cc-ccHHHh----cCcCCC----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927          293 DLRT----KLSIIPQEPTL--FR-GSVRTN----LDPLGM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN  357 (467)
Q Consensus       293 ~~r~----~i~~v~Q~~~l--f~-~tv~en----l~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~  357 (467)
                      ++|+    +|+++||+|.-  =+ -||..-    |.....    ...+++.+.++.+|+.+--.+        +.....+
T Consensus        86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r--------l~~yPHe  157 (534)
T COG4172          86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR--------LDAYPHE  157 (534)
T ss_pred             HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh--------hhhCCcc
Confidence            7764    79999999953  22 255443    332222    234566778888887653322        2233478


Q ss_pred             CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927          358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELV  434 (467)
Q Consensus       358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv  434 (467)
                      ||||||||+.||.||+.+|++||-||||.+||...+.+|.+.|+++.  .|..+++|||++..++. ||||+||.+|+++
T Consensus       158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv  237 (534)
T COG4172         158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV  237 (534)
T ss_pred             cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence            99999999999999999999999999999999999999999999864  38999999999999987 9999999999999


Q ss_pred             EecChhhHhcc-CchHHH
Q 044927          435 EYDLPSKLMET-NSAFSK  451 (467)
Q Consensus       435 ~~g~~~~l~~~-~~~~~~  451 (467)
                      |.|+.+++++. ...|.+
T Consensus       238 E~~~t~~lF~~PqHpYTr  255 (534)
T COG4172         238 ETGTTETLFAAPQHPYTR  255 (534)
T ss_pred             ecCcHHHHhhCCCChHHH
Confidence            99999999973 334543

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.7e-38  Score=282.15  Aligned_cols=213  Identities=23%  Similarity=0.364  Sum_probs=184.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC-EeCCCCCHHHH-hcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-LDICSMGLKDL-RTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g-~~i~~~~~~~~-r~~  297 (467)
                      .++++|||++|++  ..+|+++||++.+||.-+|+|||||||||++..|.|-.+|++|+++++| .|+..++...+ |..
T Consensus         5 iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G   82 (249)
T COG4674           5 ILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG   82 (249)
T ss_pred             eEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence            5899999999965  3499999999999999999999999999999999999999999999999 89999987765 567


Q ss_pred             cEEEcCCCccccc-cHHHhcCcC--CC----------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPL--GM----------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG  361 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~--~~----------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG  361 (467)
                      ||-=+|.|..|.. ||+||+...  .+          .+   .+++.+.+...++.+..+..           ...||.|
T Consensus        83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----------A~~LSHG  151 (249)
T COG4674          83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----------AALLSHG  151 (249)
T ss_pred             cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----------hhhhccc
Confidence            9999999999976 999999421  10          11   22466666666666554443           4679999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~  440 (467)
                      |||++.|+..++++|++|+||||++|+-.+.....-+.++.+..++++++|.||+.+++. ||+|-||+.|.+..+|+.+
T Consensus       152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld  231 (249)
T COG4674         152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD  231 (249)
T ss_pred             hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence            999999999999999999999999999777777788888888889999999999999986 9999999999999999999


Q ss_pred             hHhcc
Q 044927          441 KLMET  445 (467)
Q Consensus       441 ~l~~~  445 (467)
                      ++.+.
T Consensus       232 ~v~~d  236 (249)
T COG4674         232 EVQND  236 (249)
T ss_pred             HhhcC
Confidence            98754

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.4e-37  Score=338.16  Aligned_cols=198  Identities=20%  Similarity=0.328  Sum_probs=161.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++  +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++          .||
T Consensus       319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~  385 (635)
T PRK11147        319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA  385 (635)
T ss_pred             eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence            5999999999964  35999999999999999999999999999999999999999999998 4322          599


Q ss_pred             EEcCCC-ccccc-cHHHhcCcCC-CC--C--HHHHHHHHHHcChH-HHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEP-TLFRG-SVRTNLDPLG-MY--S--DNEIWEAMEKCQLK-ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~-~lf~~-tv~enl~~~~-~~--~--~~~~~~~~~~~~l~-~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      |++|++ .+++. |+.||+.... ..  .  ..++.+.++..++. +..           ......||||||||++||||
T Consensus       386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGekqRl~la~a  454 (635)
T PRK11147        386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRA-----------MTPVKALSGGERNRLLLARL  454 (635)
T ss_pred             EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHH-----------hChhhhCCHHHHHHHHHHHH
Confidence            999986 46554 9999996421 11  1  23344445554442 222           22346899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe-CCEEEE-ecChhhHh
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS-YGELVE-YDLPSKLM  443 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~-~G~iv~-~g~~~~l~  443 (467)
                      ++.+|++|||||||++||+.+...+.+.+++.  +.|+|+|||+.+.+.. ||++++++ +|+++. .|++++.+
T Consensus       455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~  527 (635)
T PRK11147        455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR  527 (635)
T ss_pred             HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence            99999999999999999999999999999876  4599999999999875 99999998 899875 56666653

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=7.9e-38  Score=335.49  Aligned_cols=191  Identities=26%  Similarity=0.307  Sum_probs=162.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++++|++  . .|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++             ..++
T Consensus       340 ~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~  403 (590)
T PRK13409        340 LVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS  403 (590)
T ss_pred             EEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence            5999999999953  2 5999999999999999999999999999999999999999999985             1599


Q ss_pred             EEcCCCccc-cccHHHhcCcCC-CC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          300 IIPQEPTLF-RGSVRTNLDPLG-MY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       300 ~v~Q~~~lf-~~tv~enl~~~~-~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      |+||++.++ ..|++||+.+.. .. ......++++..++.+..++.+           .+||||||||++|||||+++|
T Consensus       404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----------~~LSGGe~QRvaiAraL~~~p  472 (590)
T PRK13409        404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV-----------KDLSGGELQRVAIAACLSRDA  472 (590)
T ss_pred             EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHhcCC
Confidence            999998764 569999996421 12 2234456777777765554443           789999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecC
Q 044927          377 RILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDL  438 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~  438 (467)
                      ++|||||||++||+.+...+.+.|+++.  .++|+|+|||+++.+.. |||+++|+ |++...|+
T Consensus       473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~  536 (590)
T PRK13409        473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH  536 (590)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence            9999999999999999999999999863  37899999999998875 99999996 58877776

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4e-38  Score=278.20  Aligned_cols=227  Identities=27%  Similarity=0.405  Sum_probs=179.4

Q ss_pred             EEEEeEEEEeCC-------CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH
Q 044927          221 IELEDLKVRYRP-------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD  293 (467)
Q Consensus       221 i~~~~vs~~y~~-------~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~  293 (467)
                      ++++|+|+.|..       +...+++.|||++++|+.+||+|.||||||||.|+|+|..+|++|+|++||+++.--+...
T Consensus         5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~   84 (267)
T COG4167           5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF   84 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence            677888776632       2234899999999999999999999999999999999999999999999999987666566


Q ss_pred             HhcccEEEcCCCcc-ccc--cHHHhcC-cC---CC----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          294 LRTKLSIIPQEPTL-FRG--SVRTNLD-PL---GM----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       294 ~r~~i~~v~Q~~~l-f~~--tv~enl~-~~---~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      ..++|-+++|||.- |+-  .|-.-++ +.   .+    ...+++.+.++.+|+.      |+.-+    -....||.||
T Consensus        85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~------Pdhan----~~~~~la~~Q  154 (267)
T COG4167          85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLL------PDHAN----YYPHMLAPGQ  154 (267)
T ss_pred             hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccC------ccccc----cchhhcCchh
Confidence            66789999999852 321  1222121 11   11    2235677778887764      32211    1236799999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecCh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~  439 (467)
                      |||||+||||.-+|+|+|-||+.++||...+.++.+...++  ..|..-|+|+.++..++. +|.|+||++|+++|.|++
T Consensus       155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t  234 (267)
T COG4167         155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST  234 (267)
T ss_pred             HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence            99999999999999999999999999999999888887664  348899999999999997 999999999999999999


Q ss_pred             hhHhcc--CchHHHHHHHHH
Q 044927          440 SKLMET--NSAFSKLVAEYR  457 (467)
Q Consensus       440 ~~l~~~--~~~~~~l~~~~~  457 (467)
                      .++++.  ...-+++++.++
T Consensus       235 ~~v~a~P~~~~TkRlieShF  254 (267)
T COG4167         235 ADVLASPLHELTKRLIESHF  254 (267)
T ss_pred             hhhhcCCccHHHHHHHHHHh
Confidence            999973  344556665543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-37  Score=335.49  Aligned_cols=207  Identities=21%  Similarity=0.300  Sum_probs=156.4

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++||+++|++  +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|..           .++|
T Consensus         2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~   68 (638)
T PRK10636          2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW   68 (638)
T ss_pred             EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence            789999999964  359999999999999999999999999999999999999999999998841           3788


Q ss_pred             EcCCCccccccHHHhcCcCC-CC---CH-----------HHH---HHHHHH-------cChHHHHHhCCCccc-ccccCC
Q 044927          301 IPQEPTLFRGSVRTNLDPLG-MY---SD-----------NEI---WEAMEK-------CQLKATISRLPMLLD-SSVSDE  354 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~-~~---~~-----------~~~---~~~~~~-------~~l~~~i~~l~~g~~-t~v~~~  354 (467)
                      ++|++..+..|+.+++.... .+   +.           ..+   ....+.       ..+...+..+  |+. ......
T Consensus        69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~  146 (638)
T PRK10636         69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP  146 (638)
T ss_pred             EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence            88865444345444331000 00   00           000   000000       0112223332  332 223445


Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       355 g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      ..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.  +.|+|+|||+.+.+.. ||+|++|++|++
T Consensus       147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i  224 (638)
T PRK10636        147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL  224 (638)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence            5789999999999999999999999999999999999999999999875  4699999999999876 999999999999


Q ss_pred             E-EecChhhHhc
Q 044927          434 V-EYDLPSKLME  444 (467)
Q Consensus       434 v-~~g~~~~l~~  444 (467)
                      + ..|+++....
T Consensus       225 ~~~~g~~~~~~~  236 (638)
T PRK10636        225 FEYTGNYSSFEV  236 (638)
T ss_pred             EEecCCHHHHHH
Confidence            6 4788776653

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=301.78  Aligned_cols=414  Identities=18%  Similarity=0.154  Sum_probs=275.1

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIV-AIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      .|+++|++..-..+......++.+.+.++....-++....|...+ ++.-+++...+.+...+...++...+.+..+++.
T Consensus       186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR  265 (659)
T KOG0060|consen  186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR  265 (659)
T ss_pred             HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence            378899988877777777777776666655555555333333222 2222222223333333332222222233334444


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh---C
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIV-------LL---P  150 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~  150 (467)
                      -.-.+...+.++|.-|+.++.........++...+..........|+.+....+.    .++.++.+       +.   .
T Consensus       266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~----Ylg~ilsy~vi~~p~Fs~h~y  341 (659)
T KOG0060|consen  266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFD----YLGGILSYVVIAIPFFSGHVY  341 (659)
T ss_pred             hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhheeeEEeeeeeccccc
Confidence            4455667788999999998876655555554444433333333444444333222    22222211       11   1


Q ss_pred             CCccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------------CCCCc-cC
Q 044927          151 GKHLPGFVGLSL----SYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPE-----------------PPAII-EE  208 (467)
Q Consensus       151 ~~~~~g~~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~-----------------~~~~~-~~  208 (467)
                      +.+++..+...+    .+...+...+..+......+.+-..-..||.|+++.-.+                 ..... ..
T Consensus       342 ~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~  421 (659)
T KOG0060|consen  342 DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLP  421 (659)
T ss_pred             CCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCC
Confidence            234443322211    122233334444444445555555667888887642110                 00000 00


Q ss_pred             CCCCCCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 044927          209 TKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS  288 (467)
Q Consensus       209 ~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~  288 (467)
                      ......++....|++++|++.-|+++..+.+|+||+|+.|+.+.|.||||||||+|++.+.|+++..+|++.--...-. 
T Consensus       422 ~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~-  500 (659)
T KOG0060|consen  422 PGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP-  500 (659)
T ss_pred             CCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-
Confidence            0011223445679999999999875666788899999999999999999999999999999999999999976432110 


Q ss_pred             CCHHHHhcccEEEcCCCccccccHHHhcCcC--------CCCCHHHHHHHHHHcChHHHHHhCCCcccccc-cCCCCCCC
Q 044927          289 MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWS  359 (467)
Q Consensus       289 ~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-~~~g~~LS  359 (467)
                             +.+-|+||.|+.-.||+||-+.+.        ...+++++.+.++.+++.+.+.+. .|+|+.+ -+-...||
T Consensus       501 -------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS  572 (659)
T KOG0060|consen  501 -------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLS  572 (659)
T ss_pred             -------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcC
Confidence                   358899999999999999998532        125789999999999999988886 6888665 45668899


Q ss_pred             hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927          360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      +||+||+|+||.++++|++-||||.|||+|.+.|..+.+.+++.  |.|.|.|+||-+.-+.-|.++-|+.
T Consensus       573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g  641 (659)
T KOG0060|consen  573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG  641 (659)
T ss_pred             HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence            99999999999999999999999999999999999999999885  8999999999999999999999986

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.6e-36  Score=351.51  Aligned_cols=211  Identities=23%  Similarity=0.296  Sum_probs=174.4

Q ss_pred             cEEEEeEEEEeCC-----------CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeC
Q 044927          220 RIELEDLKVRYRP-----------NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDI  286 (467)
Q Consensus       220 ~i~~~~vs~~y~~-----------~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i  286 (467)
                      .+.++||++..+.           +...+|+|+|+++++|+++||+||||||||||+++|+|..++  .+|+|.+||.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            5899999998742           123599999999999999999999999999999999999874  689999999875


Q ss_pred             CCCCHHHHhcccEEEcCCCcccc-ccHHHhcCcC---C---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCC
Q 044927          287 CSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPL---G---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEG  355 (467)
Q Consensus       287 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~---~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g  355 (467)
                      .   ...+++.+|||+|++.+++ .||+||+.+.   .   ..+.+    .+.++++..++.+.       .++.+|..+
T Consensus       947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140        947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred             C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence            4   3456778999999987775 5999999642   1   12222    24566777776543       345555443


Q ss_pred             -CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH-H-hhcCEEEEEeC-
Q 044927          356 -ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT-I-TDSDMFMVLSY-  430 (467)
Q Consensus       356 -~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~-  430 (467)
                       ..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++.. +|+|+|+++|+++. + +.||++++|++ 
T Consensus      1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140       1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred             CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence             6899999999999999999999999999999999999999999999864 58999999999984 3 56999999996 


Q ss_pred             CEEEEecChh
Q 044927          431 GELVEYDLPS  440 (467)
Q Consensus       431 G~iv~~g~~~  440 (467)
                      |+++..|++.
T Consensus      1097 G~~v~~G~~~ 1106 (1470)
T PLN03140       1097 GQVIYSGPLG 1106 (1470)
T ss_pred             CEEEEECCcc
Confidence            8999999864

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=9.9e-37  Score=278.42  Aligned_cols=155  Identities=22%  Similarity=0.279  Sum_probs=127.8

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT  314 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  314 (467)
                      .++|+|+||++++|++++|+||||||||||+++++    +++|++.++|.. ..    ..++.++|++|           
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q-----------   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ-----------   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH-----------
Confidence            45899999999999999999999999999999995    369999998752 11    12345788877           


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC--CCEEEeeCCCCCCCHHH
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR--NRILVLDEATASIDSAT  392 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~--p~iliLDEpts~LD~~~  392 (467)
                                   .++++..++.+.          ..+....+||||||||++||||++++  |+++||||||++||+.+
T Consensus        68 -------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~  124 (176)
T cd03238          68 -------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD  124 (176)
T ss_pred             -------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence                         123333333211          24456688999999999999999999  99999999999999999


Q ss_pred             HHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          393 DAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       393 ~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      .+.+.+.+++.. .++|+|++||+++.+..||++++|++|+
T Consensus       125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~  165 (176)
T cd03238         125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS  165 (176)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence            999999998864 5899999999999988899999997654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=3.1e-36  Score=327.73  Aligned_cols=206  Identities=23%  Similarity=0.303  Sum_probs=155.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||+++|++  ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|..           .++
T Consensus         3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~   69 (635)
T PRK11147          3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA   69 (635)
T ss_pred             EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence            4899999999964  359999999999999999999999999999999999999999999998731           256


Q ss_pred             EEcCCCcc-ccccHHHhcCcCC-------------------CCCHHHHHH------HHH-------HcChHHHHHhCCCc
Q 044927          300 IIPQEPTL-FRGSVRTNLDPLG-------------------MYSDNEIWE------AME-------KCQLKATISRLPML  346 (467)
Q Consensus       300 ~v~Q~~~l-f~~tv~enl~~~~-------------------~~~~~~~~~------~~~-------~~~l~~~i~~l~~g  346 (467)
                      +++|.+.. ..+++.+++....                   ....+.+..      .+.       ...+.+.+..+  |
T Consensus        70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g  147 (635)
T PRK11147         70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G  147 (635)
T ss_pred             EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence            77775532 1234544431000                   000000000      000       00122233332  2


Q ss_pred             ccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEE
Q 044927          347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMF  425 (467)
Q Consensus       347 ~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i  425 (467)
                      +.  .......||||||||++|||||+.+|++|||||||++||+.+...+.+.|++..  .|+|+|||+...+.. ||+|
T Consensus       148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i  223 (635)
T PRK11147        148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRI  223 (635)
T ss_pred             CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeE
Confidence            32  134557899999999999999999999999999999999999999999998863  599999999999876 9999


Q ss_pred             EEEeCCEEEE-ecChhhHhc
Q 044927          426 MVLSYGELVE-YDLPSKLME  444 (467)
Q Consensus       426 ~vl~~G~iv~-~g~~~~l~~  444 (467)
                      ++|++|+++. .|++++.+.
T Consensus       224 ~~L~~G~i~~~~g~~~~~~~  243 (635)
T PRK11147        224 VDLDRGKLVSYPGNYDQYLL  243 (635)
T ss_pred             EEEECCEEEEecCCHHHHHH
Confidence            9999999984 588877654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.8e-36  Score=273.72  Aligned_cols=213  Identities=28%  Similarity=0.351  Sum_probs=181.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~-r~  296 (467)
                      .++++|++.+-.+. +.+|+++||+|++||+.+|.||||||||||.++|+|.  |++++|+|.++|+||.++++.+. |.
T Consensus         3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~   81 (251)
T COG0396           3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA   81 (251)
T ss_pred             eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence            48999999998643 3599999999999999999999999999999999996  48899999999999999998764 66


Q ss_pred             ccEEEcCCCccccc-cHHHhcCcC--C--C------CCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHH
Q 044927          297 KLSIIPQEPTLFRG-SVRTNLDPL--G--M------YSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~-tv~enl~~~--~--~------~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      .|...+|.|.=++| ++.+-+...  .  .      ...+++.++++..++++ ++++       .++   ..+|||||.
T Consensus        82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R-------~vN---~GFSGGEkK  151 (251)
T COG0396          82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER-------YVN---EGFSGGEKK  151 (251)
T ss_pred             CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc-------ccC---CCcCcchHH
Confidence            79999999998888 888776421  1  1      11345667777777766 3322       222   468999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEecChhh
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g~~~~  441 (467)
                      |..|+.+++.+|++.|||||-||||..+-+.+.+.+..++ +++++++|||.-..+..  .|++.||-+|+|+..|.+ |
T Consensus       152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e  230 (251)
T COG0396         152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E  230 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence            9999999999999999999999999999999999998865 58999999999998887  499999999999999999 6


Q ss_pred             Hhc
Q 044927          442 LME  444 (467)
Q Consensus       442 l~~  444 (467)
                      |..
T Consensus       231 l~~  233 (251)
T COG0396         231 LAE  233 (251)
T ss_pred             HHH
Confidence            653

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=4.3e-37  Score=329.79  Aligned_cols=193  Identities=26%  Similarity=0.347  Sum_probs=156.7

Q ss_pred             EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHH
Q 044927          224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL-----------IDGLDICSMGLK  292 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~  292 (467)
                      ++++++|+++ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|.           ++|.++.++...
T Consensus        77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~  154 (590)
T PRK13409         77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK  154 (590)
T ss_pred             cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence            4589999753 34899999 8999999999999999999999999999999999997           899887644221


Q ss_pred             --HHhcccE----EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          293 --DLRTKLS----IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       293 --~~r~~i~----~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                        ..+.+++    |++|.|.+|.+|++||+...  ...+++.++++..++.+..++           ...+||||||||+
T Consensus       155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~-----------~~~~LSgGe~qrv  221 (590)
T PRK13409        155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV--DERGKLDEVVERLGLENILDR-----------DISELSGGELQRV  221 (590)
T ss_pred             HhccCcceeecccchhhhhhhhcchHHHHHHhh--hHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence              1112344    45556667788999998632  122455666777666544333           3468999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYG  431 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G  431 (467)
                      +|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus       222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            9999999999999999999999999999999999986558999999999999876 9999999873

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.1e-36  Score=257.51  Aligned_cols=194  Identities=23%  Similarity=0.327  Sum_probs=164.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~  296 (467)
                      .+.++||+.+.++.  -.|-++||+|.+||++-+.||||||||||+.-+.|.+.++   +|++.+|++++..++..  ++
T Consensus         2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR   77 (213)
T COG4136           2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR   77 (213)
T ss_pred             ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence            46789999887643  4799999999999999999999999999999999999884   79999999999877654  67


Q ss_pred             ccEEEcCCCccccc-cHHHhcCcCC------CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          297 KLSIIPQEPTLFRG-SVRTNLDPLG------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~-tv~enl~~~~------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ++|+++||++||+. +|.+|+.+.-      .........++++.++..+..+.|           .+||||||-||++-
T Consensus        78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~  146 (213)
T COG4136          78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL  146 (213)
T ss_pred             heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence            89999999999976 9999996531      122344566888999998888887           67899999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH-H-CCCceEEEEccChhHHhhcCEEEEE
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIRE-E-FPGSTVITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~-~~~~tvi~itH~l~~~~~~d~i~vl  428 (467)
                      |+|+..|+.++||||+|.||..-+..+.+..-. . ..|..+|+|||+...+..-.||+-|
T Consensus       147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~  207 (213)
T COG4136         147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM  207 (213)
T ss_pred             HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence            999999999999999999999988888777654 2 3488999999999988755555544

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3.3e-36  Score=349.70  Aligned_cols=200  Identities=23%  Similarity=0.206  Sum_probs=164.9

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC----CCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG  310 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~----~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~  310 (467)
                      +.+|+|+|+++++||+++|+||||||||||+|+|+|..    .|.+|+|.+||.++.+.. ...|+.++||+|++.+++.
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence            35899999999999999999999999999999999986    578999999999876543 3457779999999887764


Q ss_pred             -cHHHhcCcCC----------CCCHHHH-----HHHHHHcChHHHHHhCCCcccccccC-CCCCCChhHHHHHHHHHHhc
Q 044927          311 -SVRTNLDPLG----------MYSDNEI-----WEAMEKCQLKATISRLPMLLDSSVSD-EGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       311 -tv~enl~~~~----------~~~~~~~-----~~~~~~~~l~~~i~~l~~g~~t~v~~-~g~~LSgGq~Qrl~iARal~  373 (467)
                       ||+||+.+..          ..+.++.     ..+++..++       .+-.+|.+|+ ....||||||||++|||||+
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~  225 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL  225 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence             9999996421          1122221     123344443       2335677764 45789999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccCh-hHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRV-PTIT-DSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~~-~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      .+|++++|||||+|||+.+...+.+.|+++.  .|+|+|+++|++ +.+. .+|++++|++|+++..|+++++
T Consensus       226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~  298 (1394)
T TIGR00956       226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA  298 (1394)
T ss_pred             hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence            9999999999999999999999999999864  389999999997 4554 5999999999999999999887

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.3e-35  Score=274.11  Aligned_cols=188  Identities=23%  Similarity=0.307  Sum_probs=155.7

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT  314 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  314 (467)
                      .++|+||||++++||.+||||+||||||||+|+|+|.|+|++|+|.++|.--.-+..     ..|+-      .+.|-+|
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~------pelTGre  108 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFD------PELTGRE  108 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCC------cccchHH
Confidence            358999999999999999999999999999999999999999999999952211110     12221      2358999


Q ss_pred             hcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCC
Q 044927          315 NLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS  387 (467)
Q Consensus       315 nl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~  387 (467)
                      |+.+.+   ..+.    +.+.+..+-+.|.+|++. |          .+++|.||+-|+++|-|...+|+|||+||..+.
T Consensus       109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlav  177 (249)
T COG1134         109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAV  177 (249)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence            996422   1233    344556666777777765 2          378899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          388 IDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       388 LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      -|+.-.++-.+.+.++ .+++|+|+|||+++.++. |||+++|++|+|...|+++++.+
T Consensus       178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~  236 (249)
T COG1134         178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP  236 (249)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence            9999888888888876 678999999999999986 99999999999999999999874

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.3e-36  Score=280.30  Aligned_cols=207  Identities=24%  Similarity=0.336  Sum_probs=157.2

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc-CCCccc-cccHH
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP-QEPTLF-RGSVR  313 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~tv~  313 (467)
                      ++++|+||+|++|++++++|||||||||++|+|.|+..|++|.|.++|.+-.+ +.+++-+++++|+ |...+. .-.+.
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence            48999999999999999999999999999999999999999999999987554 2334444566654 333332 11233


Q ss_pred             HhcCcC---CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927          314 TNLDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS  390 (467)
Q Consensus       314 enl~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~  390 (467)
                      |.+...   -+.++++..+-++     .+.+-+  +++..+......||-|||.|.-||.||+++|++|+|||||-+||.
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV  189 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV  189 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence            322110   1234443332211     111111  234444445688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccCchHH
Q 044927          391 ATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETNSAFS  450 (467)
Q Consensus       391 ~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~~~~  450 (467)
                      .++..+.+.+++..  .++||++.||.++.+.. ||||++++.|+++.+|+.++|.+.-+.++
T Consensus       190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k  252 (325)
T COG4586         190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYK  252 (325)
T ss_pred             hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCce
Confidence            99999999999853  48999999999998775 99999999999999999999876544443

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=4.1e-35  Score=319.98  Aligned_cols=220  Identities=20%  Similarity=0.214  Sum_probs=160.9

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC---CCCccEEEEcCEeCCCC--CH--
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV---EPENGRILIDGLDICSM--GL--  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~---~p~~G~i~i~g~~i~~~--~~--  291 (467)
                      ..|+++|++|+|++  ..+|+|+||+|++|+++|||||||||||||+++|+|..   .|.+|+|.+.++++...  +.  
T Consensus       176 ~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~  253 (718)
T PLN03073        176 KDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ  253 (718)
T ss_pred             eeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence            35999999999964  34999999999999999999999999999999999864   57899998766543211  11  


Q ss_pred             ----------HHHhcccEEEcCCCccccccHHHhcCcC--CCCCH----HHHHHHHHHcCh----------HHHHHhCCC
Q 044927          292 ----------KDLRTKLSIIPQEPTLFRGSVRTNLDPL--GMYSD----NEIWEAMEKCQL----------KATISRLPM  345 (467)
Q Consensus       292 ----------~~~r~~i~~v~Q~~~lf~~tv~enl~~~--~~~~~----~~~~~~~~~~~l----------~~~i~~l~~  345 (467)
                                ..+++.+++++|++.+...+..+|....  ...+.    +++.++++..++          ...+..+  
T Consensus       254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l--  331 (718)
T PLN03073        254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL--  331 (718)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence                      1124558899998765433333433110  01111    122222222211          1122222  


Q ss_pred             ccc-ccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cC
Q 044927          346 LLD-SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SD  423 (467)
Q Consensus       346 g~~-t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d  423 (467)
                      |++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.  +.|+|+|||+++.+.. ||
T Consensus       332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d  409 (718)
T PLN03073        332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT  409 (718)
T ss_pred             CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence            222 1122334789999999999999999999999999999999999999999999886  6799999999999876 99


Q ss_pred             EEEEEeCCEEE-EecChhhHhc
Q 044927          424 MFMVLSYGELV-EYDLPSKLME  444 (467)
Q Consensus       424 ~i~vl~~G~iv-~~g~~~~l~~  444 (467)
                      +|++|++|+++ ..|++++...
T Consensus       410 ~i~~l~~g~i~~~~g~~~~~~~  431 (718)
T PLN03073        410 DILHLHGQKLVTYKGDYDTFER  431 (718)
T ss_pred             EEEEEECCEEEEeCCCHHHHHH
Confidence            99999999996 6787776543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=304.05  Aligned_cols=207  Identities=28%  Similarity=0.379  Sum_probs=162.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|.++|++++|++  +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+-           -+++
T Consensus         3 ~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~   69 (530)
T COG0488           3 MITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG   69 (530)
T ss_pred             eEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence            4899999999953  45999999999999999999999999999999999999999999998752           2699


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC-CC--HHHHHHH------------------HHH-------cChHHHHHhCCCccccc
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM-YS--DNEIWEA------------------MEK-------CQLKATISRLPMLLDSS  350 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~-~~--~~~~~~~------------------~~~-------~~l~~~i~~l~~g~~t~  350 (467)
                      |++|++.+.+. ||.+.+..... ..  ..+...+                  .+.       +.+...+..+  |+...
T Consensus        70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~  147 (530)
T COG0488          70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE  147 (530)
T ss_pred             EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence            99999999865 99988742210 00  0111111                  000       1112222222  22222


Q ss_pred             ccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEe
Q 044927          351 VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLS  429 (467)
Q Consensus       351 v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~  429 (467)
                       .....+||||||.|++|||||+.+|++|+|||||++||.++..-+.+.|.+. +| |+|+||||-+++.. |++|+-++
T Consensus       148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld  224 (530)
T COG0488         148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELD  224 (530)
T ss_pred             -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEec
Confidence             3445789999999999999999999999999999999999999999999865 45 99999999999987 99999999


Q ss_pred             CCEEE-EecChhhHhc
Q 044927          430 YGELV-EYDLPSKLME  444 (467)
Q Consensus       430 ~G~iv-~~g~~~~l~~  444 (467)
                      .|++. ..|.++..++
T Consensus       225 ~g~l~~y~Gny~~~~~  240 (530)
T COG0488         225 RGKLTPYKGNYSSYLE  240 (530)
T ss_pred             CCceeEecCCHHHHHH
Confidence            99885 5677776654

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.3e-35  Score=341.90  Aligned_cols=206  Identities=22%  Similarity=0.263  Sum_probs=164.8

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-c
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-G  310 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~  310 (467)
                      ..+|+|+|+.+++||+++|+||||||||||+|+|+|.++|+   +|+|.+||.++.+..   .|+.++||+|++.+++ .
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence            34899999999999999999999999999999999999998   999999999886543   2678999999987775 5


Q ss_pred             cHHHhcCcCCC-------------CCHH----------HHHHHHHHc---C------hHHHHHhC--CCcccccccC-CC
Q 044927          311 SVRTNLDPLGM-------------YSDN----------EIWEAMEKC---Q------LKATISRL--PMLLDSSVSD-EG  355 (467)
Q Consensus       311 tv~enl~~~~~-------------~~~~----------~~~~~~~~~---~------l~~~i~~l--~~g~~t~v~~-~g  355 (467)
                      ||+||+.+...             .+.+          ++...++..   +      .+..++.+  .+-.||.+|+ ..
T Consensus       255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~  334 (1470)
T PLN03140        255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI  334 (1470)
T ss_pred             cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence            99999964210             0011          110011110   0      12233332  3335777765 45


Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChh-HH-hhcCEEEEEeCC
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVP-TI-TDSDMFMVLSYG  431 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~-~~-~~~d~i~vl~~G  431 (467)
                      ..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++..  .|+|+|+++|++. .+ ..+|+|++|++|
T Consensus       335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G  414 (1470)
T PLN03140        335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG  414 (1470)
T ss_pred             cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence            7899999999999999999999999999999999999999999999863  4899999999973 44 459999999999


Q ss_pred             EEEEecChhhHh
Q 044927          432 ELVEYDLPSKLM  443 (467)
Q Consensus       432 ~iv~~g~~~~l~  443 (467)
                      +++..|+++++.
T Consensus       415 ~ivy~G~~~~~~  426 (1470)
T PLN03140        415 QIVYQGPRDHIL  426 (1470)
T ss_pred             eEEEeCCHHHHH
Confidence            999999998875

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-34  Score=251.88  Aligned_cols=226  Identities=24%  Similarity=0.429  Sum_probs=174.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC-----EeCCCCCHHH-
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG-----LDICSMGLKD-  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g-----~~i~~~~~~~-  293 (467)
                      -++++++|+.|++..  ..+|+||++.|||..||||+||||||||+++|++-+.|++|+|.+.-     .++..++..+ 
T Consensus         6 LL~V~~lsk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR   83 (258)
T COG4107           6 LLSVSGLSKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER   83 (258)
T ss_pred             ceeehhhhhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence            589999999997543  68999999999999999999999999999999999999999999865     3344444333 


Q ss_pred             ---HhcccEEEcCCCc--c-ccccHHHhcC----cCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          294 ---LRTKLSIIPQEPT--L-FRGSVRTNLD----PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       294 ---~r~~i~~v~Q~~~--l-f~~tv~enl~----~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                         +|...|+|.|+|.  | ..-|.--||-    ..+.-..-+++..     ..+|+++.+-. .+++.+....+|||++
T Consensus        84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~-----a~~WL~~VEI~-~~RiDD~PrtFSGGMq  157 (258)
T COG4107          84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE-----AQDWLEEVEID-LDRIDDLPRTFSGGMQ  157 (258)
T ss_pred             HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHH-----HHHHHHhcccC-cccccCcccccchHHH
Confidence               3566899999984  2 1112233431    1110001112111     23455544322 2456677799999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~  440 (467)
                      ||+-|||-|+..|+++++||||-|||...+..+.+.++.+-.  +-.++++||++..++. +||.+||++|+++|.|-.+
T Consensus       158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD  237 (258)
T COG4107         158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD  237 (258)
T ss_pred             HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence            999999999999999999999999999999999999988543  7899999999999986 9999999999999999988


Q ss_pred             hHhc-cCchHHHHH
Q 044927          441 KLME-TNSAFSKLV  453 (467)
Q Consensus       441 ~l~~-~~~~~~~l~  453 (467)
                      .++. ....|.++.
T Consensus       238 rvLDDP~hPYTQLL  251 (258)
T COG4107         238 RVLDDPHHPYTQLL  251 (258)
T ss_pred             ccccCCCCchHHHH
Confidence            8886 345566654

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.3e-34  Score=309.38  Aligned_cols=215  Identities=27%  Similarity=0.395  Sum_probs=180.1

Q ss_pred             ccEEEEeEEEEeCCC---CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC---CccEEEEcCEeCCCCCHH
Q 044927          219 GRIELEDLKVRYRPN---TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLK  292 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~---~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p---~~G~i~i~g~~i~~~~~~  292 (467)
                      ..+.++|++..-++.   .+.+|+|||.+++|||..||+||||||||||+++|+|-.++   .+|+|++||++   .+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~  100 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR  100 (613)
T ss_pred             ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence            368899999988654   36799999999999999999999999999999999999975   68999999954   3567


Q ss_pred             HHhcccEEEcCCCccccc-cHHHhcCcCC------CCCH----HHHHHHHHHcChHHHHHhCCCcccccccC-CCCCCCh
Q 044927          293 DLRTKLSIIPQEPTLFRG-SVRTNLDPLG------MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSD-EGENWSV  360 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~lf~~-tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~-~g~~LSg  360 (467)
                      .+++..|||.||..+++. ||+|++.+..      ..+.    +.++++++..++.+.       -||.+|. ..+.+||
T Consensus       101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSG  173 (613)
T KOG0061|consen  101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSG  173 (613)
T ss_pred             hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCcccc
Confidence            789999999999998865 9999995421      1222    334555555555432       3566653 3378999


Q ss_pred             hHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH--HhhcCEEEEEeCCEEEEec
Q 044927          361 GQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT--ITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       361 Gq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~iv~~g  437 (467)
                      |||+|++||.-++.||+||+|||||||||..+...+.+.|+++. +|+|||++-|.++.  ....|++++|.+|+++..|
T Consensus       174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G  253 (613)
T KOG0061|consen  174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG  253 (613)
T ss_pred             chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence            99999999999999999999999999999999999999999964 59999999999974  3459999999999999999


Q ss_pred             ChhhHh
Q 044927          438 LPSKLM  443 (467)
Q Consensus       438 ~~~~l~  443 (467)
                      +++++.
T Consensus       254 ~~~~~~  259 (613)
T KOG0061|consen  254 SPRELL  259 (613)
T ss_pred             CHHHHH
Confidence            998775

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=1.6e-34  Score=253.65  Aligned_cols=136  Identities=42%  Similarity=0.713  Sum_probs=122.4

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHHhc
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNL  316 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~enl  316 (467)
                      |+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.+|++ |+++| 
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~-   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN-   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            7899999999999999999999999999999999999999999999999998888899999999999999877 69999 


Q ss_pred             CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC
Q 044927          317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA  386 (467)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts  386 (467)
                           ..+++++++++.+++.+       ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus        80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                 23456777777776644       34566777779999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.9e-32  Score=287.42  Aligned_cols=202  Identities=21%  Similarity=0.287  Sum_probs=169.0

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      ..-++++|++++|+++ +++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.-.           -+
T Consensus       319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~  386 (530)
T COG0488         319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK  386 (530)
T ss_pred             CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence            3468999999999755 56999999999999999999999999999999999999999999987541           26


Q ss_pred             cEEEcCCC-cccc-ccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          298 LSIIPQEP-TLFR-GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       298 i~~v~Q~~-~lf~-~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +||.+|+. .++. .|+.|++.-.. ...+.+++..+...++...-..-          ....||||||-|+.||+.++.
T Consensus       387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~----------~v~~LSGGEk~Rl~La~ll~~  456 (530)
T COG0488         387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEK----------PVGVLSGGEKARLLLAKLLLQ  456 (530)
T ss_pred             EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhC----------chhhcCHhHHHHHHHHHHhcc
Confidence            99999987 3443 48999986322 33367788888887765443332          346799999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEEe-cChhhHhc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY-DLPSKLME  444 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~-g~~~~l~~  444 (467)
                      +|.+|||||||++||.++...+.++|.+.  .-|+|+||||-..+.. |++++.+++ ++... |++++..+
T Consensus       457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~  525 (530)
T COG0488         457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE  525 (530)
T ss_pred             CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence            99999999999999999999999999886  3599999999999997 999999998 67655 66666543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-33  Score=250.84  Aligned_cols=186  Identities=24%  Similarity=0.392  Sum_probs=157.1

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++.+|++...+.  ..++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.++.... +..++..-|
T Consensus         3 L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y   79 (209)
T COG4133           3 LEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY   79 (209)
T ss_pred             chhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence            566777776643  35899999999999999999999999999999999999999999999999887653 335677888


Q ss_pred             EcCCCcccc-ccHHHhcCcCC----CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          301 IPQEPTLFR-GSVRTNLDPLG----MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       301 v~Q~~~lf~-~tv~enl~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      +--.+-+-. .|+.||+.|..    ..+++.++++++.+++..+.+ +|          ..+||-|||+|++|||-++..
T Consensus        80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d-lp----------~~~LSAGQqRRvAlArL~ls~  148 (209)
T COG4133          80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LP----------VGQLSAGQQRRVALARLWLSP  148 (209)
T ss_pred             hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc-cc----------hhhcchhHHHHHHHHHHHcCC
Confidence            887777754 59999998643    245688999999999876543 33          367999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHh
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTIT  420 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~  420 (467)
                      +|++|||||+++||.+.+..+-..+... .+|-.||..||..-.+.
T Consensus       149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence            9999999999999999999999888774 56889999999876554

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.2e-32  Score=262.54  Aligned_cols=190  Identities=21%  Similarity=0.242  Sum_probs=125.3

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHH-HHHhcCCCCCccEEEEcC-------EeC---CCCCHHHHhc-ccEEEc
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLI-SALFRLVEPENGRILIDG-------LDI---CSMGLKDLRT-KLSIIP  302 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll-~~l~gl~~p~~G~i~i~g-------~~i---~~~~~~~~r~-~i~~v~  302 (467)
                      ..+|+++||+|++||+++|+||||||||||+ ..+.     .+|++.+..       ..+   ........+. ..++..
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI   82 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence            4589999999999999999999999999995 4442     134432210       000   0000111111 234444


Q ss_pred             CCCccc-c--ccHH---HhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhHHHHHHHHHHhcC
Q 044927          303 QEPTLF-R--GSVR---TNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       303 Q~~~lf-~--~tv~---enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      |++... +  .++.   +...+.. ....+...+   .   .+.+..+  |+.. .......+||||||||++|||||+.
T Consensus        83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~  154 (226)
T cd03270          83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE---R---LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS  154 (226)
T ss_pred             cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH---H---HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence            444311 1  1221   1111100 000000000   0   1223332  2322 2455668899999999999999999


Q ss_pred             CC--CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCEEEEec
Q 044927          375 RN--RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGELVEYD  437 (467)
Q Consensus       375 ~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~iv~~g  437 (467)
                      +|  +++||||||++||+.+...+.+.+++.. .+.|+|+|||+++.+..||++++|      ++|+|+++|
T Consensus       155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence            98  5999999999999999999999998853 589999999999998889999999      999999986

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=4.3e-33  Score=311.62  Aligned_cols=215  Identities=21%  Similarity=0.341  Sum_probs=187.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-CHHHHhcc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTK  297 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~-~~~~~r~~  297 (467)
                      ..+..+|+++.|+.... +++++|+.|++||+.|+.|+|||||||+++++.|..+|++|++.++|.++..- +..+.+++
T Consensus       563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~  641 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ  641 (885)
T ss_pred             ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence            46889999999976544 89999999999999999999999999999999999999999999999998764 33458999


Q ss_pred             cEEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      +||+||+..++.. |.||.+.++.   ....    +.+.+.++..++.+..+..           .+.+|||+|+|+++|
T Consensus       642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~a  710 (885)
T KOG0059|consen  642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSFA  710 (885)
T ss_pred             cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHHH
Confidence            9999999988865 9999996532   2222    2355667777776665542           368999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      -|++.+|++++|||||+|+||.+++.+++.+++..+ ++.+|++||.+++.+. |||+.+|.+|++..-|+++++.++
T Consensus       711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr  788 (885)
T KOG0059|consen  711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR  788 (885)
T ss_pred             HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence            999999999999999999999999999999999765 5599999999999997 999999999999999999999754

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.98  E-value=2.7e-32  Score=254.48  Aligned_cols=164  Identities=21%  Similarity=0.300  Sum_probs=131.7

Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---------cEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---------GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR  309 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~---------G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~  309 (467)
                      +++++++++| +++|+||||||||||+++|.|+.+|..         |++.++|.++..   ...++++++|||+|..+.
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~~   89 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGRY   89 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCce
Confidence            6789999999 999999999999999999999987653         467777876543   223578999999998761


Q ss_pred             ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc----CCCCEEEeeCCC
Q 044927          310 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILVLDEAT  385 (467)
Q Consensus       310 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~----~~p~iliLDEpt  385 (467)
                      +          ....+++.++++.          +...    ......||||||||++|||+++    .+|++++|||||
T Consensus        90 ~----------~~~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~  145 (197)
T cd03278          90 S----------IISQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD  145 (197)
T ss_pred             e----------EEehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence            1          0012344444444          1111    2334679999999999999986    567999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927          386 ASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       386 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      ++||+.....+.+.|++..++.|+|++||+++.+..||+++.+..
T Consensus       146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence            999999999999999998778999999999999888999999875

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.97  E-value=1.2e-29  Score=255.04  Aligned_cols=411  Identities=15%  Similarity=0.176  Sum_probs=271.8

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVL----IVAIPTVIVAKYIQGYYLSSARELMRMNGTTKA   77 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (467)
                      +++|+|+....+...+...++..-++.++.+...+.-.+-...    .++..+..+...+.+.+.++.-++...+....+
T Consensus       221 ~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g  300 (728)
T KOG0064|consen  221 NSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKG  300 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence            4689999999888888888887777766554443332221111    111222233334555555555566665666677


Q ss_pred             cHHHHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h
Q 044927           78 PIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--------L  149 (467)
Q Consensus        78 ~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  149 (467)
                      .+...-+-.+++-++|-.|+..+...++.++..+..............|+...-+++.--+....+.+++.        .
T Consensus       301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~  380 (728)
T KOG0064|consen  301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLA  380 (728)
T ss_pred             HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccC
Confidence            77777788899999999999999988888877777666555444555566554444332222211111110        0


Q ss_pred             C-CCc---cHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCC-Cc
Q 044927          150 P-GKH---LPGF--VGLSLS---YALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPP-------------EPPA-II  206 (467)
Q Consensus       150 ~-~~~---~~g~--~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~-------------~~~~-~~  206 (467)
                      . +..   ..+.  .-.+.+   ........+.-+...+.++.+-..-..|+++.++.-.             +... ..
T Consensus       381 s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~  460 (728)
T KOG0064|consen  381 SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRT  460 (728)
T ss_pred             CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccC
Confidence            0 110   0111  111111   1222333444455556666666666667765442100             0000 00


Q ss_pred             c----CCCCCCC---CCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927          207 E----ETKPPAS---WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI  279 (467)
Q Consensus       207 ~----~~~~~~~---~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i  279 (467)
                      .    ...+.+.   ......|.++||-.--|.+ ..++..++|+|++|-.+.|.||||||||+|++.|.|++|...|..
T Consensus       461 ~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~-~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L  539 (728)
T KOG0064|consen  461 IDESRNSNPLPTTDAIRNFNGIILENIPVITPAG-DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL  539 (728)
T ss_pred             ccccccCCcCCccchhhcccceEEecCceeccCc-ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee
Confidence            0    0000000   0012358899998877654 458999999999999999999999999999999999999988876


Q ss_pred             EEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC--------CCCCHHHHHHHHHHcChHHHHHhCCCcccccc
Q 044927          280 LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL--------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSV  351 (467)
Q Consensus       280 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v  351 (467)
                      .+--           +.+|-|+||.|+.--||.||-+-+.        ..++|.++...+..+.++..+++ ..|+|.. 
T Consensus       540 ~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da~-  606 (728)
T KOG0064|consen  540 SIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDAV-  606 (728)
T ss_pred             ecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhhh-
Confidence            5422           3359999999998888999988431        23678899999999999876665 4555543 


Q ss_pred             cCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927          352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       352 ~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl  428 (467)
                      .+--.-||||+|||+++||.++++|+.-+|||.||++.++.|..+.++.+..  |-+.|.||||++....-...+-.
T Consensus       607 ~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~  681 (728)
T KOG0064|consen  607 RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF  681 (728)
T ss_pred             ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence            2333569999999999999999999999999999999999999999998875  78999999999988765554444

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=3.3e-31  Score=256.07  Aligned_cols=192  Identities=24%  Similarity=0.306  Sum_probs=135.1

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-----c-CC----CCCcc-----------EEEEcCEeCCCCCHH---
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-----R-LV----EPENG-----------RILIDGLDICSMGLK---  292 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-----g-l~----~p~~G-----------~i~i~g~~i~~~~~~---  292 (467)
                      .|+|+|++|+.|..++|.|+||||||||++.++     + +.    .|..+           -|.+|..++..-+..   
T Consensus        10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~   89 (261)
T cd03271          10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA   89 (261)
T ss_pred             cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence            699999999999999999999999999998652     1 11    13222           355555555332110   


Q ss_pred             -------HHhc----------------ccEEEcCCCcc-ccccHHHhcCcCCCC-CHHHHHHHHHHcChHHHHHhCCCcc
Q 044927          293 -------DLRT----------------KLSIIPQEPTL-FRGSVRTNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLL  347 (467)
Q Consensus       293 -------~~r~----------------~i~~v~Q~~~l-f~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~  347 (467)
                             ++|+                .+.|..++... ...|+.||+.++... ..++..++++.+           |+
T Consensus        90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v-----------gL  158 (261)
T cd03271          90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV-----------GL  158 (261)
T ss_pred             HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------CC
Confidence                   0111                12223332222 233555555432211 112222233333           34


Q ss_pred             cc-cccCCCCCCChhHHHHHHHHHHhcCC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhc
Q 044927          348 DS-SVSDEGENWSVGQRQLFCLGRVLLKR---NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDS  422 (467)
Q Consensus       348 ~t-~v~~~g~~LSgGq~Qrl~iARal~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~  422 (467)
                      +. ..++...+|||||+||++|||+|+++   |+++||||||++||+.....+.+.++++. .|.|+|+|+|+++.++.|
T Consensus       159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a  238 (261)
T cd03271         159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA  238 (261)
T ss_pred             chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence            33 35666789999999999999999996   79999999999999999999999998864 489999999999999899


Q ss_pred             CEEEEE------eCCEEEEecCh
Q 044927          423 DMFMVL------SYGELVEYDLP  439 (467)
Q Consensus       423 d~i~vl------~~G~iv~~g~~  439 (467)
                      |++++|      ++|+|+++|+|
T Consensus       239 D~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         239 DWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             CEEEEecCCcCCCCCEEEEeCCC
Confidence            999999      89999999975

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.3e-31  Score=234.37  Aligned_cols=201  Identities=24%  Similarity=0.361  Sum_probs=152.8

Q ss_pred             cEEEEeEEEEeC-----CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE----eCCCCC
Q 044927          220 RIELEDLKVRYR-----PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL----DICSMG  290 (467)
Q Consensus       220 ~i~~~~vs~~y~-----~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~----~i~~~~  290 (467)
                      .+.++|++++|-     +-.-++++|+||+++.||++++-||||||||||+++|.+-|.|++|+|.+.-.    |+....
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~   83 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE   83 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence            378889988772     11236899999999999999999999999999999999999999999998542    344444


Q ss_pred             HHH----HhcccEEEcCCCcc-cccc----HHHhcCcCCCC---CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCC
Q 044927          291 LKD----LRTKLSIIPQEPTL-FRGS----VRTNLDPLGMY---SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW  358 (467)
Q Consensus       291 ~~~----~r~~i~~v~Q~~~l-f~~t----v~enl~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~L  358 (467)
                      +++    .|+.||||+|--.. ..-+    +.|-+.-.+..   ..++....+.+.++.+-+-++|          ..++
T Consensus        84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTF  153 (235)
T COG4778          84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATF  153 (235)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence            443    35679999995322 2222    22322111111   1223344556666665555554          3689


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeC
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSY  430 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~  430 (467)
                      ||||+||+.|||.++.+-+||+|||||++||..+++.+.+.|++. .+|..+|=|-|+-+.-+. |||++-|..
T Consensus       154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            999999999999999999999999999999999999999999885 469999999999877665 999987754

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=6.5e-32  Score=237.24  Aligned_cols=207  Identities=20%  Similarity=0.313  Sum_probs=171.5

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++||+..-      -|-.+|..+..||++-+|||||||||||+-.++|+. |.+|+|.++|.++..++..++.++-+|
T Consensus         4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY   76 (248)
T COG4138           4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY   76 (248)
T ss_pred             eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence            5677776432      377899999999999999999999999999999997 579999999999999999999999999


Q ss_pred             EcCCC-ccccccHHHhcCcCCCC--CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC---
Q 044927          301 IPQEP-TLFRGSVRTNLDPLGMY--SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK---  374 (467)
Q Consensus       301 v~Q~~-~lf~~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~---  374 (467)
                      +.|+. ..|...|...+......  -..++.++++..++           +..++....+|||||+||+-+|-..++   
T Consensus        77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~P  145 (248)
T COG4138          77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQITP  145 (248)
T ss_pred             HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEecC
Confidence            99865 46777888888653221  11234444444444           444445557899999999999999885   


Q ss_pred             --C--CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChh-HHhhcCEEEEEeCCEEEEecChhhHhcc
Q 044927          375 --R--NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVP-TITDSDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       375 --~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                        |  .++|+||||.++||...+..+...|.+.. .|.+|||.+|+++ +++.||+++.++.|++...|..+|++..
T Consensus       146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~  222 (248)
T COG4138         146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP  222 (248)
T ss_pred             CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence              3  47999999999999999999988888864 5999999999997 6888999999999999999999999864

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=2.1e-30  Score=249.88  Aligned_cols=192  Identities=21%  Similarity=0.332  Sum_probs=134.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------cCCCCCcc------
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------------RLVEPENG------  277 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~----------------gl~~p~~G------  277 (467)
                      .|+++|. ++|++  ..++++++     |++++|+||||||||||+++|.                ++..+.+|      
T Consensus         3 ~i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~   74 (243)
T cd03272           3 QVIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA   74 (243)
T ss_pred             EEEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence            3666665 34643  23777776     7899999999999999999998                44455555      


Q ss_pred             --EEEEcCEeCC-CC--CHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHH--hCCCc----
Q 044927          278 --RILIDGLDIC-SM--GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATIS--RLPML----  346 (467)
Q Consensus       278 --~i~i~g~~i~-~~--~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~--~l~~g----  346 (467)
                        +|.+++.+-. ..  ....+++.++++||++.++..          ..+.+++...++..++...-.  ..+.|    
T Consensus        75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~  144 (243)
T cd03272          75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKINS  144 (243)
T ss_pred             EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence              5555543211 00  112345667777777665431          123445555555554432100  01111    


Q ss_pred             ---ccccccCCCCCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927          347 ---LDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI  419 (467)
Q Consensus       347 ---~~t~v~~~g~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  419 (467)
                         +....++.+..||||||||++||||++    ++|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+..
T Consensus       145 l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~  224 (243)
T cd03272         145 LTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELL  224 (243)
T ss_pred             hhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence               122345677899999999999999996    4689999999999999999999999999886688999999998877


Q ss_pred             hhcCEEEEEe
Q 044927          420 TDSDMFMVLS  429 (467)
Q Consensus       420 ~~~d~i~vl~  429 (467)
                      +.||++++|+
T Consensus       225 ~~~d~i~~l~  234 (243)
T cd03272         225 EVADKFYGVK  234 (243)
T ss_pred             hhCCEEEEEE
Confidence            7899999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.97  E-value=3.8e-30  Score=243.27  Aligned_cols=190  Identities=15%  Similarity=0.088  Sum_probs=137.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEe-CCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFK-EGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~-~Ge~~~ivG~sGsGKSTll~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      .|+++|+. +|.+.     ++++|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+..
T Consensus         5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~   77 (213)
T cd03279           5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE   77 (213)
T ss_pred             EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence            58899988 76432     46667654 589999999999999999999994 666665655543 11122333345667


Q ss_pred             cEEEcCCCccccccHHHhcCcCCCCCHHHHHHH--HHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC-
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEA--MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK-  374 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~--~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~-  374 (467)
                      +++++|++...    ..+.... ..+.++..+.  ++..+           +++.+...+.+|||||+||++||||++. 
T Consensus        78 v~~~f~~~~~~----~~~~r~~-gl~~~~~~~~~~l~~g~-----------l~~~l~~~~~~lS~G~~~r~~la~al~~~  141 (213)
T cd03279          78 VSFTFQLGGKK----YRVERSR-GLDYDQFTRIVLLPQGE-----------FDRFLARPVSTLSGGETFLASLSLALALS  141 (213)
T ss_pred             EEEEEEECCeE----EEEEEec-CCCHHHHHHhhhhhhcc-----------hHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence            99999987321    1122211 2333333322  12222           3344455668899999999999999984 


Q ss_pred             ---------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          375 ---------RNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       375 ---------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                               +|+++||||||++||+.+...+.+.+++..+ ++|+|+|||+++.+.. ||+++++++|.
T Consensus       142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence                     6789999999999999999999999988754 7899999999998876 89999999985

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.7e-28  Score=250.41  Aligned_cols=215  Identities=25%  Similarity=0.372  Sum_probs=170.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i  298 (467)
                      .++++|++..-      .++|+||++++||++||.|--|||+|=++++|.|..++.+|+|.+||+++.-.++. ..+..|
T Consensus       263 ~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi  336 (500)
T COG1129         263 VLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI  336 (500)
T ss_pred             EEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence            47788876421      47899999999999999999999999999999999999999999999999877755 678889


Q ss_pred             EEEcCCCc---cc-cccHHHhcCcC--CCCCHH-HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          299 SIIPQEPT---LF-RGSVRTNLDPL--GMYSDN-EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       299 ~~v~Q~~~---lf-~~tv~enl~~~--~~~~~~-~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      +|||.|-.   +| ..+|++|+...  ...... -+...-++....+++.++.-.- ........+||||-+||+.|||.
T Consensus       337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQKVvlarw  415 (500)
T COG1129         337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQKVVLARW  415 (500)
T ss_pred             EeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhhhHHHHHH
Confidence            99999753   55 45999999642  111100 1222223333445565553111 11224457899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhh
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~  441 (467)
                      |..+|++|||||||-|+|.-+...|++.|+++ .+|++||+||-.+.++. .||||+||.+|+|+..=+.++
T Consensus       416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~  487 (500)
T COG1129         416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE  487 (500)
T ss_pred             HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence            99999999999999999999999999999986 46899999999999877 599999999999998655554

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=9.1e-29  Score=239.73  Aligned_cols=181  Identities=19%  Similarity=0.284  Sum_probs=134.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCE-eCCCCC--HHHHhcccEEEcCCCc---------cc-cccHH
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGL-DICSMG--LKDLRTKLSIIPQEPT---------LF-RGSVR  313 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~-~i~~~~--~~~~r~~i~~v~Q~~~---------lf-~~tv~  313 (467)
                      ..+++||||||||||||+++|++++.|. .|+++..|. ++-...  ....+.++++++|++.         +. .-||.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            5699999999999999999999999886 468888776 432111  1122458999999862         22 34778


Q ss_pred             HhcCcCC---------CCCHHHHHHHHHHcChHH----------HHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc-
Q 044927          314 TNLDPLG---------MYSDNEIWEAMEKCQLKA----------TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-  373 (467)
Q Consensus       314 enl~~~~---------~~~~~~~~~~~~~~~l~~----------~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~-  373 (467)
                      +|+....         ....+++.+.++.+++..          .+.++-. ..........+||||||||++||||++ 
T Consensus       105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~  183 (251)
T cd03273         105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN-MGGVWKESLTELSGGQRSLVALSLILAL  183 (251)
T ss_pred             EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH-hHHhhcccccccCHHHHHHHHHHHHHHH
Confidence            7774321         112356667777777630          0000000 002233456789999999999999997 


Q ss_pred             ---CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEe
Q 044927          374 ---KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS  429 (467)
Q Consensus       374 ---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~  429 (467)
                         .+|+++||||||++||+.+...+.+.+++..+|.|+|+|||+.+.++.||+++-+.
T Consensus       184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~  242 (251)
T cd03273         184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR  242 (251)
T ss_pred             hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence               58899999999999999999999999998877899999999988888899998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.95  E-value=2.3e-28  Score=229.35  Aligned_cols=163  Identities=23%  Similarity=0.250  Sum_probs=127.3

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHH----hcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC-----ccccc-
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISAL----FRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-----TLFRG-  310 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l----~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~lf~~-  310 (467)
                      .++++.+| +++|+||||||||||+++|    .|..+|.+|.+..+...+.   ....+..+++++|++     .++.. 
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~   91 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSL   91 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence            34566777 9999999999999999999    4999998887762222222   123456799999998     33332 


Q ss_pred             cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH------HHHHHHhcCCCCEEEeeCC
Q 044927          311 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL------FCLGRVLLKRNRILVLDEA  384 (467)
Q Consensus       311 tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr------l~iARal~~~p~iliLDEp  384 (467)
                      |+.+|+.+.   ..+++.+.+                    .+....||+||+||      ++||||++.+|++++||||
T Consensus        92 ~~~~~~~~~---~~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP  148 (204)
T cd03240          92 AILENVIFC---HQGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP  148 (204)
T ss_pred             hHhhceeee---chHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence            888888642   222322221                    23447899999996      7999999999999999999


Q ss_pred             CCCCCHHHHH-HHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeC
Q 044927          385 TASIDSATDA-ILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       385 ts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      |++||+.+.. .+.+.+++..+  ++|+|++||+++.+..||++++|++
T Consensus       149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~  197 (204)
T cd03240         149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK  197 (204)
T ss_pred             ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence            9999999999 99999988654  7899999999998888999999965

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.95  E-value=7.1e-29  Score=251.07  Aligned_cols=197  Identities=23%  Similarity=0.301  Sum_probs=163.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      .-+.++||+|.|+++. .++++++|-|..++++|+|||||||||||+|+++|...|..|.|.-.-..           ++
T Consensus       388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~  455 (614)
T KOG0927|consen  388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL  455 (614)
T ss_pred             CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence            3589999999997654 68999999999999999999999999999999999999999998654322           34


Q ss_pred             EEEcCCC---ccccccHHHhcCc-CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          299 SIIPQEP---TLFRGSVRTNLDP-LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       299 ~~v~Q~~---~lf~~tv~enl~~-~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      ++..|+-   ..+..+..|++.. +. ....+++...+..+|+.......|.          .+||+|||.||++||.++
T Consensus       456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~  525 (614)
T KOG0927|consen  456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAV  525 (614)
T ss_pred             hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHh
Confidence            4444532   2345677777743 22 2456778889999999866665552          689999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEE-ecCh
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE-YDLP  439 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~-~g~~  439 (467)
                      ..|.+|+|||||++||.++...+.++|.++.  .++|++||+...+.. +++|.+.++|.+.. .|..
T Consensus       526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i  591 (614)
T KOG0927|consen  526 KQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI  591 (614)
T ss_pred             cCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence            9999999999999999999999999998863  479999999999987 99999999998853 4443

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=4.6e-29  Score=235.30  Aligned_cols=181  Identities=20%  Similarity=0.256  Sum_probs=133.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-ccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r-~~i  298 (467)
                      .++++|.. .|++  ..+++++++     ++++|+|||||||||++++|.          +++|.+.     ...| +++
T Consensus         5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i   61 (212)
T cd03274           5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL   61 (212)
T ss_pred             EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence            47888875 7753  348999987     899999999999999999997          3345432     2223 579


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHc-------------ChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKC-------------QLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~-------------~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      ++++|+..+++. |+++++.++.....-+   .++..             +-...+..+|++.++.    ...||+||||
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~----~~~lS~G~~~  134 (212)
T cd03274          62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKP---LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN----ISNLSGGEKT  134 (212)
T ss_pred             HHHhcCCCCCCCCceEEEEEEEEeCCCHH---HHHHCCcCCCCCceEEcCCcEEEeeccccccccc----hhhcCHHHHH
Confidence            999999877654 7777765432211000   00000             0001122345444443    3579999999


Q ss_pred             HHHHHHHhcC----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927          365 LFCLGRVLLK----RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       365 rl~iARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      |++||||++.    +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+..+.|||+++|..
T Consensus       135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence            9999999963    58999999999999999999999999998778899999999887778999999974

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.94  E-value=7.1e-27  Score=259.36  Aligned_cols=101  Identities=24%  Similarity=0.350  Sum_probs=91.9

Q ss_pred             cccc-cccCCCCCCChhHHHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh
Q 044927          346 LLDS-SVSDEGENWSVGQRQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT  420 (467)
Q Consensus       346 g~~t-~v~~~g~~LSgGq~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~  420 (467)
                      |++. .++....+|||||+||++|||+|+++|   +++||||||++||+.....+.+.|+++. +|.|+|+|+|+++.+.
T Consensus       818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~  897 (943)
T PRK00349        818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK  897 (943)
T ss_pred             CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            4543 467778999999999999999999999   9999999999999999999999998864 5899999999999998


Q ss_pred             hcCEEEEE------eCCEEEEecChhhHhccC
Q 044927          421 DSDMFMVL------SYGELVEYDLPSKLMETN  446 (467)
Q Consensus       421 ~~d~i~vl------~~G~iv~~g~~~~l~~~~  446 (467)
                      .||+|++|      ++|+|++.|+++++.+..
T Consensus       898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~  929 (943)
T PRK00349        898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVE  929 (943)
T ss_pred             hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence            99999999      799999999999998654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.94  E-value=2.2e-26  Score=265.30  Aligned_cols=211  Identities=22%  Similarity=0.259  Sum_probs=147.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHH---------HHhcCCCCCcc----E----EEEc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLIS---------ALFRLVEPENG----R----ILID  282 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~---------~l~gl~~p~~G----~----i~i~  282 (467)
                      .++++|++.       ..|+|+||+|++||+++|.|+||||||||++         .+.|...+..+    .    |.+|
T Consensus       600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id  672 (1809)
T PRK00635        600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT  672 (1809)
T ss_pred             eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence            477777752       2699999999999999999999999999999         56665433111    1    3344


Q ss_pred             CEeCCCCC----HH------HHh---------cc-----cEEEcCC------------------C---------------
Q 044927          283 GLDICSMG----LK------DLR---------TK-----LSIIPQE------------------P---------------  305 (467)
Q Consensus       283 g~~i~~~~----~~------~~r---------~~-----i~~v~Q~------------------~---------------  305 (467)
                      -.++..-+    ..      ++|         ++     ..+.++.                  +               
T Consensus       673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~  752 (1809)
T PRK00635        673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL  752 (1809)
T ss_pred             CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence            33332210    01      233         11     1223332                  0               


Q ss_pred             -----ccccc-cHHHhcCcCCC-C-----CHHHHHHHHHHcChHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHh
Q 044927          306 -----TLFRG-SVRTNLDPLGM-Y-----SDNEIWEAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       306 -----~lf~~-tv~enl~~~~~-~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~-v~~~g~~LSgGq~Qrl~iARal  372 (467)
                           ..+.+ ||.||+.+... +     ..+++.+.+      +.+..  .|++.. .++...+|||||+||++|||||
T Consensus       753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL  824 (1809)
T PRK00635        753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL  824 (1809)
T ss_pred             HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence                 12223 66666654211 0     111222111      12222  245554 5677789999999999999999


Q ss_pred             c---CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEe------CCEEEEecChhhH
Q 044927          373 L---KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLS------YGELVEYDLPSKL  442 (467)
Q Consensus       373 ~---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~------~G~iv~~g~~~~l  442 (467)
                      +   .+|+++||||||++||+.+.+.+.+.|+++. .|.|+|+|+|+++.+..||++++|.      +|++++.|+++++
T Consensus       825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel  904 (1809)
T PRK00635        825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL  904 (1809)
T ss_pred             hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence            8   6999999999999999999999999998864 5899999999999997899999996      7999999999999


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      ...
T Consensus       905 ~~~  907 (1809)
T PRK00635        905 IHL  907 (1809)
T ss_pred             Hhc
Confidence            763

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=2.3e-27  Score=261.41  Aligned_cols=199  Identities=28%  Similarity=0.363  Sum_probs=166.5

Q ss_pred             CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcccEEEcCCC-cccc
Q 044927          233 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFR  309 (467)
Q Consensus       233 ~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~  309 (467)
                      +++.+|+||+=-++||..+||+|+||||||||+++|+|=..-  .+|+|+++|.+..+   +..++.+|||.|+. ++-.
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~  878 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE  878 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence            455689999999999999999999999999999999986533  47999999988653   67889999999965 6767


Q ss_pred             ccHHHhcCcC---C---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC-CE
Q 044927          310 GSVRTNLDPL---G---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN-RI  378 (467)
Q Consensus       310 ~tv~enl~~~---~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p-~i  378 (467)
                      -||||-|.+.   +   ..+++    -++++++..++++.-       |..||..|..||..||+|+.||=-|+.|| .|
T Consensus       879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i  951 (1391)
T KOG0065|consen  879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI  951 (1391)
T ss_pred             cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence            7999998542   1   22332    355666666666554       44588889999999999999999999999 88


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH--HhhcCEEEEEeC-CEEEEecChhh
Q 044927          379 LVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT--ITDSDMFMVLSY-GELVEYDLPSK  441 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~-G~iv~~g~~~~  441 (467)
                      |+|||||||||..+...+++.++++. .|+||+..-|.++.  .+..|+++.|++ |+.|..|+..+
T Consensus       952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            99999999999999999999999964 69999999999984  456999999985 78999998654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.94  E-value=1.7e-25  Score=225.63  Aligned_cols=214  Identities=24%  Similarity=0.374  Sum_probs=173.1

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC-CCCCHHHHhc
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI-CSMGLKDLRT  296 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i-~~~~~~~~r~  296 (467)
                      ..-++++|++..-+.+ ...++++||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ..+++.++|+
T Consensus       255 ~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~  333 (501)
T COG3845         255 EVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR  333 (501)
T ss_pred             CeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence            3468999999876433 3479999999999999999999999999999999999999999999999997 6777777654


Q ss_pred             -ccEEEcCCCc----cccccHHHhcCcCCC----------CCHHHHHHHHHHcChHHHHHhC---CCcccccccCCCCCC
Q 044927          297 -KLSIIPQEPT----LFRGSVRTNLDPLGM----------YSDNEIWEAMEKCQLKATISRL---PMLLDSSVSDEGENW  358 (467)
Q Consensus       297 -~i~~v~Q~~~----lf~~tv~enl~~~~~----------~~~~~~~~~~~~~~l~~~i~~l---~~g~~t~v~~~g~~L  358 (467)
                       .+||||.|.+    ....|+.||+.+...          ....++.+..+     +.++++   +.+.    .....+|
T Consensus       334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~----~~~a~~L  404 (501)
T COG3845         334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSP----DAPARSL  404 (501)
T ss_pred             cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCC----Ccchhhc
Confidence             5999999874    356699999853211          11222322221     223322   1222    2335789


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEe
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY  436 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~  436 (467)
                      |||.+||+-+||-|.++|++||..+||-|||..+.+.|++.|.+. ..|+.|++||-+++++.. ||||.||.+|+|+..
T Consensus       405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~  484 (501)
T COG3845         405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI  484 (501)
T ss_pred             CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence            999999999999999999999999999999999999999988875 469999999999998775 999999999999988


Q ss_pred             cChhh
Q 044927          437 DLPSK  441 (467)
Q Consensus       437 g~~~~  441 (467)
                      .++++
T Consensus       485 ~~~~~  489 (501)
T COG3845         485 VPPEE  489 (501)
T ss_pred             ccccc
Confidence            88776

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=1.2e-25  Score=203.18  Aligned_cols=217  Identities=22%  Similarity=0.374  Sum_probs=172.4

Q ss_pred             EEEEeEEEEeC--CCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHH
Q 044927          221 IELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP----ENGRILIDGLDICSMGLKDL  294 (467)
Q Consensus       221 i~~~~vs~~y~--~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~  294 (467)
                      +.++|++..+.  .+...+++++|++++.||+-|+||+||||||-+.|.|+|..+-    +.-+.++++.++-.+++++.
T Consensus         4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R   83 (330)
T COG4170           4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence            45667776663  2334589999999999999999999999999999999998753    45667789999999998887


Q ss_pred             hc----ccEEEcCCCccc---cccH----HHhcC---cCCC------CCHHHHHHHHHHcChHHHHHhCCCcccccccCC
Q 044927          295 RT----KLSIIPQEPTLF---RGSV----RTNLD---PLGM------YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE  354 (467)
Q Consensus       295 r~----~i~~v~Q~~~lf---~~tv----~enl~---~~~~------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~  354 (467)
                      |+    .|++++|+|.-.   +.+|    -+||-   +.+.      ....+..+.+.++|+.+.-+-+        ...
T Consensus        84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--------~SY  155 (330)
T COG4170          84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--------RSY  155 (330)
T ss_pred             hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--------HhC
Confidence            75    578999999754   2233    45652   1111      1234455677888876543321        112


Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927          355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYG  431 (467)
Q Consensus       355 g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G  431 (467)
                      ...|--||-|+|.||.|++.+|++||-||||+++|+.|+.++...+....  .+.|+++++|++..+.. ||+|-||.-|
T Consensus       156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG  235 (330)
T COG4170         156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG  235 (330)
T ss_pred             cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence            25688899999999999999999999999999999999999999998864  47899999999999875 9999999999


Q ss_pred             EEEEecChhhHhcc
Q 044927          432 ELVEYDLPSKLMET  445 (467)
Q Consensus       432 ~iv~~g~~~~l~~~  445 (467)
                      +-+|.++.+++++.
T Consensus       236 Q~~ESa~~e~l~~~  249 (330)
T COG4170         236 QTVESAPSEELVTM  249 (330)
T ss_pred             ccccccchhHHhcC
Confidence            99999999999873

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.93  E-value=2.6e-26  Score=221.91  Aligned_cols=202  Identities=18%  Similarity=0.223  Sum_probs=137.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-C-C-----CCCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD-I-C-----SMGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~-i-~-----~~~~~  292 (467)
                      .++++|. .+|.+.       .++...++ +++|+||||||||||+.+|.++..+..|+++.++.+ + .     ..+..
T Consensus         3 ~i~l~nf-~~~~~~-------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~   73 (247)
T cd03275           3 RLELENF-KSYKGR-------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN   73 (247)
T ss_pred             EEEEECc-cccCCC-------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence            4777776 456321       12233344 999999999999999999999998888888655421 1 0     11111


Q ss_pred             HHhcccEEEcCCCc--cccccHHHhcC---cCC-CCCHHHHHHHHHHcChHHHHHh--CCCccccccc---------CCC
Q 044927          293 DLRTKLSIIPQEPT--LFRGSVRTNLD---PLG-MYSDNEIWEAMEKCQLKATISR--LPMLLDSSVS---------DEG  355 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~--lf~~tv~enl~---~~~-~~~~~~~~~~~~~~~l~~~i~~--l~~g~~t~v~---------~~g  355 (467)
                      ...-.+.+..|++.  .+..++++...   ..+ ..+.+++.+.++.+++..+...  .++|--+.+.         ...
T Consensus        74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~  153 (247)
T cd03275          74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM  153 (247)
T ss_pred             eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence            22334455555432  33444443321   111 3456677788888887422111  1222111111         223


Q ss_pred             CCCChhHHHHHHHHHHhcCC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhhcCEEEEEeC
Q 044927          356 ENWSVGQRQLFCLGRVLLKR----NRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      .+||+|||||++||||++.+    |+++||||||++||+.....+.+.|++..+ +.|+|+|||+.+.+..||++++|..
T Consensus       154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~  233 (247)
T cd03275         154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR  233 (247)
T ss_pred             HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence            68999999999999999864    899999999999999999999999998754 8899999999998888999999875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.5e-25  Score=223.21  Aligned_cols=195  Identities=19%  Similarity=0.261  Sum_probs=165.0

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      ++.+++.+|+|.|.++..+.+.+++++++.-+++++||+||+||||++|++.+-..|..|-+-+.+           |.+
T Consensus       360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r  428 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR  428 (582)
T ss_pred             CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence            456999999999987765689999999999999999999999999999999999999999887765           668


Q ss_pred             cEEEcCCCcc-ccccH--HHhcC-cCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          298 LSIIPQEPTL-FRGSV--RTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       298 i~~v~Q~~~l-f~~tv--~enl~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      |+|-.|...= ++..+  .|-+. .++..+++++++.|...|+...+...+          -..||||||-||++|.+.+
T Consensus       429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~  498 (582)
T KOG0062|consen  429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW  498 (582)
T ss_pred             ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence            9999996543 22222  22221 122337899999999999887665543          2579999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                      .+|.+|+|||||+.||.++-..+-++|+...  -.||+|||+.+.+.. |+.+++.++|++..
T Consensus       499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            9999999999999999999999999998864  359999999999997 99999999999975

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.92  E-value=4.2e-25  Score=223.77  Aligned_cols=222  Identities=17%  Similarity=0.231  Sum_probs=146.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc--CEeCCCCCHHHHhc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID--GLDICSMGLKDLRT  296 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~--g~~i~~~~~~~~r~  296 (467)
                      ..+.++|+|+.|.+  ...++|..|++.+|+++||+|+|||||||++++|.|-..|..-++-+-  ..++..-....+..
T Consensus        74 ~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~  151 (614)
T KOG0927|consen   74 RDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQA  151 (614)
T ss_pred             ccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHH
Confidence            46999999999964  358999999999999999999999999999999999888865544321  11111100011110


Q ss_pred             ccEEEcCCCccccccHHHhcCcC-CCCCH---HHHHHHHHHcChHHHHHh----C-CCccc-ccccCCCCCCChhHHHHH
Q 044927          297 KLSIIPQEPTLFRGSVRTNLDPL-GMYSD---NEIWEAMEKCQLKATISR----L-PMLLD-SSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~tv~enl~~~-~~~~~---~~~~~~~~~~~l~~~i~~----l-~~g~~-t~v~~~g~~LSgGq~Qrl  366 (467)
                      -+-...++..-.. --.|++.-. .+...   ..+++-+...+.+.+-.+    + ..|.. ........+||||||.|+
T Consensus       152 v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~  230 (614)
T KOG0927|consen  152 VVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA  230 (614)
T ss_pred             HhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH
Confidence            0000000000000 001111100 00000   122222222222211111    0 11222 233345578999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCE-EEEecChhhHhc
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGE-LVEYDLPSKLME  444 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~-iv~~g~~~~l~~  444 (467)
                      +|||||+.+|++|+|||||++||+++..-+-+.|.+.... ++++++|.-+++.. |.+|+-|++++ +...|+.++...
T Consensus       231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~  309 (614)
T KOG0927|consen  231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK  309 (614)
T ss_pred             HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence            9999999999999999999999999999999999886433 89999999999987 99999999999 678889888765

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.92  E-value=1.7e-24  Score=239.96  Aligned_cols=97  Identities=23%  Similarity=0.335  Sum_probs=88.3

Q ss_pred             cccc-cccCCCCCCChhHHHHHHHHHHhcC---CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh
Q 044927          346 LLDS-SVSDEGENWSVGQRQLFCLGRVLLK---RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT  420 (467)
Q Consensus       346 g~~t-~v~~~g~~LSgGq~Qrl~iARal~~---~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~  420 (467)
                      |++. .+++...+|||||+||++|||+|++   +|+++||||||++||+.....+.+.|+++. +|.|+|+|+|+++.+.
T Consensus       816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~  895 (924)
T TIGR00630       816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK  895 (924)
T ss_pred             CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            4544 4677889999999999999999997   599999999999999999999999998864 5899999999999998


Q ss_pred             hcCEEEEE------eCCEEEEecChhhH
Q 044927          421 DSDMFMVL------SYGELVEYDLPSKL  442 (467)
Q Consensus       421 ~~d~i~vl------~~G~iv~~g~~~~l  442 (467)
                      .||+|++|      ++|+|++.|+++++
T Consensus       896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       896 TADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            89999999      79999999999876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=9.7e-25  Score=215.39  Aligned_cols=191  Identities=22%  Similarity=0.305  Sum_probs=152.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      +-+-+.||+|.|++. .+.+++++|-|.--..+|||||||.|||||+++|.|-++|+.|+.+=+-           |-+|
T Consensus       585 PvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i  652 (807)
T KOG0066|consen  585 PVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI  652 (807)
T ss_pred             CeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence            457899999999865 4689999999999999999999999999999999999999999886443           4479


Q ss_pred             EEEcCCCc--c-ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          299 SIIPQEPT--L-FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       299 ~~v~Q~~~--l-f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |+.-|...  | -..|-.|.+.-.-..+.++.+..+-..|+.......          ....|||||+-||++|-.-++.
T Consensus       653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~  722 (807)
T KOG0066|consen  653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGG  722 (807)
T ss_pred             echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCC
Confidence            99888653  2 233666766422234556667777777765543332          2367999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcC-EEEEEeCCEE
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSD-MFMVLSYGEL  433 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d-~i~vl~~G~i  433 (467)
                      |++|||||||++||.++-..+.++|.+..  ..||+|||+-..+...| ..+|+++-.|
T Consensus       723 PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i  779 (807)
T KOG0066|consen  723 PDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI  779 (807)
T ss_pred             CCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence            99999999999999999999999999874  46999999998877633 4566665444

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=4.9e-25  Score=222.16  Aligned_cols=200  Identities=22%  Similarity=0.302  Sum_probs=144.6

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      ...|..++++..|++  +..|++-++++..|.++|+|||||+|||||+++|+.      |+|..-..+      +++|.-
T Consensus        78 ~~Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~  143 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD  143 (582)
T ss_pred             ccceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence            346999999999974  458999999999999999999999999999999998      444332211      111111


Q ss_pred             cEEEcCCCccccccHHHhcCcC-----CCCCHHHHHH-HHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPL-----GMYSDNEIWE-AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~-----~~~~~~~~~~-~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      --...|+ .+-.++-+..+...     ...+.+++.. ++.-.|..+.....|          -..||||.|-|++||||
T Consensus       144 ~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARA  212 (582)
T KOG0062|consen  144 DTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARA  212 (582)
T ss_pred             chHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHH
Confidence            0001111 11122222222110     0112344444 666666666666655          36899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEE-EEecChhhHhc
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGEL-VEYDLPSKLME  444 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~i-v~~g~~~~l~~  444 (467)
                      |..+|+||+|||||+.||..+-.-+-+.|..+.  .|+|+|||+-.++.. |.-|+.+++-++ ...|+.++..+
T Consensus       213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk  285 (582)
T KOG0062|consen  213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK  285 (582)
T ss_pred             HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence            999999999999999999999999999998763  899999999999987 889999988666 35677776654

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.92  E-value=4.3e-25  Score=206.18  Aligned_cols=172  Identities=17%  Similarity=0.212  Sum_probs=117.3

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-CHHHHhcccEEEcCCCccccccHHHhc
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-GLKDLRTKLSIIPQEPTLFRGSVRTNL  316 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~-~~~~~r~~i~~v~Q~~~lf~~tv~enl  316 (467)
                      ++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|..+.++ ....-...+.+.+|+.-++.     | 
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-   83 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-   83 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence            46677888887 7799999999999999999744332211 11112211111 00111345777777765544     2 


Q ss_pred             CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh----cCCCCEEEeeCCCCCCCHHH
Q 044927          317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL----LKRNRILVLDEATASIDSAT  392 (467)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal----~~~p~iliLDEpts~LD~~~  392 (467)
                       .....+.+++.+.++         .     .....+...+||+|||||++||||+    +.+|+++||||||++||+.+
T Consensus        84 -~~~~~~~~~~~~~l~---------~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~  148 (198)
T cd03276          84 -PLCVLSQDMARSFLT---------S-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN  148 (198)
T ss_pred             -cCCHHHHHHHHHHhc---------c-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence             111111222323332         2     1122344578999999999999999    68999999999999999999


Q ss_pred             HHHHHHHHHHHC-C---CceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          393 DAILQRIIREEF-P---GSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       393 ~~~i~~~l~~~~-~---~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      ...+.+.|++.. +   ++|+|++||+++.+..+|+|.+|..|+
T Consensus       149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~  192 (198)
T cd03276         149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD  192 (198)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence            999999998753 2   368999999999999999999998754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.91  E-value=3.5e-24  Score=213.03  Aligned_cols=168  Identities=24%  Similarity=0.366  Sum_probs=130.2

Q ss_pred             ecceeEEE-----eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCc-ccccc
Q 044927          238 LKGITCTF-----KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT-LFRGS  311 (467)
Q Consensus       238 L~~isl~i-----~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~t  311 (467)
                      +.++.|++     ..||+++++||||-||||++++|+|..+|++|+    ..++          +++|=||--. -|.+|
T Consensus       352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gt  417 (591)
T COG1245         352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGT  417 (591)
T ss_pred             cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCc
Confidence            44555554     667899999999999999999999999999998    2222          5889999432 38899


Q ss_pred             HHHhcCcC-CC-CCHHHH-HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCC
Q 044927          312 VRTNLDPL-GM-YSDNEI-WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI  388 (467)
Q Consensus       312 v~enl~~~-~~-~~~~~~-~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~L  388 (467)
                      |++-+.-. +. +.+..+ .+.++-.++++.           +.....+|||||.||++||-||.+++++++||||++.|
T Consensus       418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i-----------~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L  486 (591)
T COG1245         418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL-----------LERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL  486 (591)
T ss_pred             HHHHHHHhhhhhcccchhHHhhcCccchHHH-----------HhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence            99877421 11 111111 123333444443           33445789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeC
Q 044927          389 DSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSY  430 (467)
Q Consensus       389 D~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~  430 (467)
                      |.+.+-.+.+.|++.  ..++|.++|-|++-.+.. +||++|++.
T Consensus       487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G  531 (591)
T COG1245         487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG  531 (591)
T ss_pred             cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence            999999999999884  357999999999999987 999999973

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.89  E-value=3.7e-22  Score=180.09  Aligned_cols=211  Identities=24%  Similarity=0.248  Sum_probs=149.6

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      ...|++.++.|+|+... |++.|+|++++.|....+||.||||||||+|+|.|-.-...|.|.+.|.+--.-..-.-...
T Consensus        11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd   89 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD   89 (291)
T ss_pred             cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence            34699999999998665 68999999999999999999999999999999999988888999999975422000000112


Q ss_pred             cEEEcCC----------Cccc-cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          298 LSIIPQE----------PTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       298 i~~v~Q~----------~~lf-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      ..|+--+          ..+- .-++..-|.-.+....++-++.         ++-    +|-.+.=+-..+|-|||+|+
T Consensus        90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~L---------I~i----LDIdl~WRmHkvSDGqrRRV  156 (291)
T KOG2355|consen   90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKL---------IDI----LDIDLRWRMHKVSDGQRRRV  156 (291)
T ss_pred             eeEecccccccccccccccccccccHHHHHhhccCCChhHhhhh---------hhh----eeccceEEEeeccccchhhh
Confidence            2333211          1111 1122222210010111111111         111    22212222356899999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      -|+..|++.=++|+|||-|--||...+..+.+.+++.  .+++||++.||-.+-++. ..+++.|++|+++..-+.++.
T Consensus       157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i  235 (291)
T KOG2355|consen  157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI  235 (291)
T ss_pred             HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence            9999999999999999999999999999999999875  358999999999998775 999999999999985444433

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.88  E-value=2.8e-22  Score=183.99  Aligned_cols=85  Identities=19%  Similarity=0.243  Sum_probs=75.3

Q ss_pred             HHhCCCcccccccCCCCCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEcc
Q 044927          340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAH  414 (467)
Q Consensus       340 i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH  414 (467)
                      +..+|+|-.|++      ||+|||||++|||+++    .+|+++|+|||+++||+...+.+.+.+.+..+ ++|+|++||
T Consensus        83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH  156 (178)
T cd03239          83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL  156 (178)
T ss_pred             eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence            445677766665      9999999999999995    79999999999999999999999999988644 689999999


Q ss_pred             ChhHHhhcCEEEEEeC
Q 044927          415 RVPTITDSDMFMVLSY  430 (467)
Q Consensus       415 ~l~~~~~~d~i~vl~~  430 (467)
                      +++.+..+|+++.+.+
T Consensus       157 ~~~~~~~adrvi~i~~  172 (178)
T cd03239         157 KKEMFENADKLIGVLF  172 (178)
T ss_pred             CHHHHhhCCeEEEEEE
Confidence            9999888999999986

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.87  E-value=5.4e-22  Score=185.74  Aligned_cols=145  Identities=15%  Similarity=0.130  Sum_probs=107.7

Q ss_pred             ecceeEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927          238 LKGITCTFKEGT-RVGVVGRTGSGKTTLISALF--------RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF  308 (467)
Q Consensus       238 L~~isl~i~~Ge-~~~ivG~sGsGKSTll~~l~--------gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf  308 (467)
                      .-++||++.+|+ +++|.||||||||||++.|.        |.+-|....+                 .++|+.|....+
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l   79 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI   79 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence            457999999996 69999999999999999998        5555532111                 233433331110


Q ss_pred             cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCC
Q 044927          309 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI  388 (467)
Q Consensus       309 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~L  388 (467)
                      .                          ..+.           +.++-..+|+||||+..+++++ .+|+++++|||++++
T Consensus        80 g--------------------------~~~~-----------l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl  121 (200)
T cd03280          80 G--------------------------DEQS-----------IEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT  121 (200)
T ss_pred             C--------------------------chhh-----------hhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence            0                          0000           1112256899999999999985 899999999999999


Q ss_pred             CHHHHHHHHH-HHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927          389 DSATDAILQR-IIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       389 D~~~~~~i~~-~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g  437 (467)
                      |+.....+.. .++... .+.|+|++||+.+....||++++|++|++..++
T Consensus       122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         122 DPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence            9999887754 555543 478999999997766779999999999998763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=1e-21  Score=185.33  Aligned_cols=181  Identities=14%  Similarity=0.151  Sum_probs=113.0

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hc-----ccEEEcCCCcccccc
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RT-----KLSIIPQEPTLFRGS  311 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~-----~i~~v~Q~~~lf~~t  311 (467)
                      ++++.+++.+| ..+|+||||||||||+.+|.-..-...... ...     -...++ +.     .+-...+..   ...
T Consensus        14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~---~~~   83 (213)
T cd03277          14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGN---PGN   83 (213)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeC---CCc
Confidence            34556666655 668999999999999999875542211100 000     011111 11     111111110   001


Q ss_pred             -HHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh----cCCCCEEEeeCCCC
Q 044927          312 -VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL----LKRNRILVLDEATA  386 (467)
Q Consensus       312 -v~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal----~~~p~iliLDEpts  386 (467)
                       ..+|++.  ..+.++..+....... +.+..+|.+.+. -..+...||+|||||+.+|+++    +.+|+++|+||||+
T Consensus        84 ~~~~n~~~--~~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~  159 (213)
T cd03277          84 IQVDNLCQ--FLPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ  159 (213)
T ss_pred             cccCCceE--EEchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence             2334331  1234445555444333 455566655432 2446689999999998877554    58999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHC-C-C-ceEEEEccChhHHh-hcC--EEEEEeCCE
Q 044927          387 SIDSATDAILQRIIREEF-P-G-STVITVAHRVPTIT-DSD--MFMVLSYGE  432 (467)
Q Consensus       387 ~LD~~~~~~i~~~l~~~~-~-~-~tvi~itH~l~~~~-~~d--~i~vl~~G~  432 (467)
                      +||+.+...+.+.+.+.. + + .|+|++||++.... .||  +|+++.+|+
T Consensus       160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            999999999999998864 3 4 47999999986554 455  788888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.85  E-value=3.2e-21  Score=189.43  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=70.5

Q ss_pred             CCChhHHHHHHHHHHhcC----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          357 NWSVGQRQLFCLGRVLLK----RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      .|||||+||+++|++++.    +|++++|||||++||+.+...+.+.+++..++.|+|++||+++....||++++|++|.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~  249 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV  249 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence            599999999999997653    9999999999999999999999999998877899999999999887899999999874


Q ss_pred             E
Q 044927          433 L  433 (467)
Q Consensus       433 i  433 (467)
                      .
T Consensus       250 ~  250 (276)
T cd03241         250 E  250 (276)
T ss_pred             C
Confidence            3

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.85  E-value=1.3e-21  Score=216.18  Aligned_cols=199  Identities=25%  Similarity=0.304  Sum_probs=164.1

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC---CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc-cc
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP---ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RG  310 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p---~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~  310 (467)
                      ..+|+|+|.-++||+.+.+.||.|||||||+++++|-.+-   ..|+|.+||.+.++..+   ++.++|.+|+..-| ..
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l  204 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL  204 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence            3589999999999999999999999999999999997754   35799999999888765   77899999977655 45


Q ss_pred             cHHHhcCcCC-------CCC---HHHHH-----HHHHHcChHHHHHhCCCcccccccCCC-CCCChhHHHHHHHHHHhcC
Q 044927          311 SVRTNLDPLG-------MYS---DNEIW-----EAMEKCQLKATISRLPMLLDSSVSDEG-ENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       311 tv~enl~~~~-------~~~---~~~~~-----~~~~~~~l~~~i~~l~~g~~t~v~~~g-~~LSgGq~Qrl~iARal~~  374 (467)
                      ||+|-+++..       .++   +.+..     .+++..       .+.+..||.||++. ...|||||.||++|-+++.
T Consensus       205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkil-------GL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~  277 (1391)
T KOG0065|consen  205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL-------GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG  277 (1391)
T ss_pred             EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHh-------CchhhccceecccccccccCcccceeeeeeeeec
Confidence            9999996531       122   11111     122222       34456899998654 7899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChh--HHhhcCEEEEEeCCEEEEecChhhHh
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVP--TITDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~--~~~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +|+++.+||+|.|||..|.-++.+.+++..+  +.|.++.-|..+  .....|.|++|.+|+++..|+.++.+
T Consensus       278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~  350 (1391)
T KOG0065|consen  278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL  350 (1391)
T ss_pred             CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence            9999999999999999999999999998643  788888888765  45669999999999999999999885

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.85  E-value=1.4e-21  Score=194.67  Aligned_cols=185  Identities=26%  Similarity=0.369  Sum_probs=130.2

Q ss_pred             eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc-------
Q 044927          225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK-------  297 (467)
Q Consensus       225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~-------  297 (467)
                      ++..+|+.+.. .|..+- +.++|+.+||+||||-||||.+|+|+|.+.|.=|+-  ++-+  +++ +-+++.       
T Consensus        79 e~vHRYg~NgF-kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp--~wd-eVi~~FrGtELq~  151 (591)
T COG1245          79 EVVHRYGVNGF-KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP--SWD-EVIKRFRGTELQN  151 (591)
T ss_pred             cceeeccCCce-EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC--CHH-HHHHHhhhhHHHH
Confidence            56778875543 344442 357899999999999999999999999999987753  2210  111 001110       


Q ss_pred             -----------cEEEcC----CCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          298 -----------LSIIPQ----EPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       298 -----------i~~v~Q----~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                                 +..=||    -|..+.|+|.|-+.-           .-+.-..++.++++  +++..++....+|||||
T Consensus       152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~-----------~de~g~~devve~l--~L~nvl~r~v~~LSGGE  218 (591)
T COG1245         152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK-----------VDERGKFDEVVERL--GLENVLDRDVSELSGGE  218 (591)
T ss_pred             HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHh-----------hhhcCcHHHHHHHh--cchhhhhhhhhhcCchH
Confidence                       111111    122334444443321           11111234445544  35556666778999999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhh-cCEEEEEe
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITD-SDMFMVLS  429 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~-~d~i~vl~  429 (467)
                      -||++||.|++++++++++|||||-||...+-...+.++++.+ +++||+|.|+|..+.. +|-|.++.
T Consensus       219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence            9999999999999999999999999999999999999999876 7999999999999987 89988886

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.83  E-value=1.4e-19  Score=191.22  Aligned_cols=104  Identities=24%  Similarity=0.351  Sum_probs=92.6

Q ss_pred             cccc-cccCCCCCCChhHHHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHh
Q 044927          346 LLDS-SVSDEGENWSVGQRQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTIT  420 (467)
Q Consensus       346 g~~t-~v~~~g~~LSgGq~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~  420 (467)
                      |+.. .+|....+|||||.|||-||.-|.++.   -++||||||.||-.+-.+++++.|.++ .+|.|||+|.|+|+.++
T Consensus       810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk  889 (935)
T COG0178         810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK  889 (935)
T ss_pred             CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence            4443 578999999999999999999999887   899999999999999999999999886 46999999999999999


Q ss_pred             hcCEEEEE------eCCEEEEecChhhHhccCchH
Q 044927          421 DSDMFMVL------SYGELVEYDLPSKLMETNSAF  449 (467)
Q Consensus       421 ~~d~i~vl------~~G~iv~~g~~~~l~~~~~~~  449 (467)
                      .||+|+=|      +.|+|+++|+|+|+.+..+.|
T Consensus       890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~  924 (935)
T COG0178         890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASY  924 (935)
T ss_pred             ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccch
Confidence            99999988      468999999999998754433

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.83  E-value=2.1e-20  Score=169.12  Aligned_cols=136  Identities=23%  Similarity=0.303  Sum_probs=100.7

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE-EEcCCCccccccHHHhcCcC
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVRTNLDPL  319 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv~enl~~~  319 (467)
                      .++.+.++.++.|+|||||||||+++.+....-..+|.+.... +.          +.+ .+|+...-|           
T Consensus        14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~-----------   71 (162)
T cd03227          14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL-----------   71 (162)
T ss_pred             cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence            3445556679999999999999999998766555555444311 00          111 122211111           


Q ss_pred             CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC----CCCEEEeeCCCCCCCHHHHHH
Q 044927          320 GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK----RNRILVLDEATASIDSATDAI  395 (467)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~----~p~iliLDEpts~LD~~~~~~  395 (467)
                                          +..       .     .+||+||+||+++||+|..    +|+++|+|||++++|+.....
T Consensus        72 --------------------i~~-------~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~  119 (162)
T cd03227          72 --------------------IFT-------R-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA  119 (162)
T ss_pred             --------------------ehh-------e-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence                                000       0     1289999999999999986    789999999999999999999


Q ss_pred             HHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeC
Q 044927          396 LQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       396 i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      +.+.+.+.. +++++|++||+++....+|+++.|+.
T Consensus       120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~  155 (162)
T cd03227         120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK  155 (162)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence            999888753 36899999999999999999999975

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.82  E-value=2.1e-20  Score=179.67  Aligned_cols=198  Identities=16%  Similarity=0.228  Sum_probs=135.7

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE--EEcCEeCCCCCHHHHhccc--EEEcCCCccccccHHHhcCc
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI--LIDGLDICSMGLKDLRTKL--SIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i--~i~g~~i~~~~~~~~r~~i--~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +.+.+||+++|+||+|+|||||++.+.+..+...+.+  .+....-+..+..++.+.+  .+|....   ..+....+..
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~   87 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV   87 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence            6789999999999999999999999999887764332  2222221224555555444  1111100   0011111100


Q ss_pred             CCCCCHHHHHHHHHHcC-----hHHHHHhCCCcccccccCCCCCCChhH--------HHHHHHHHHhcCCCCEEEeeCCC
Q 044927          319 LGMYSDNEIWEAMEKCQ-----LKATISRLPMLLDSSVSDEGENWSVGQ--------RQLFCLGRVLLKRNRILVLDEAT  385 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~-----l~~~i~~l~~g~~t~v~~~g~~LSgGq--------~Qrl~iARal~~~p~iliLDEpt  385 (467)
                      .... -+.. +.....|     +-|.+.+++.++++..++.|..+|||+        +||+++||+++++++|.+|  ||
T Consensus        88 ~~~~-~~~a-~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T  163 (249)
T cd01128          88 AEMV-LEKA-KRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--AT  163 (249)
T ss_pred             HHHH-HHHH-HHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--ee
Confidence            0000 0001 1111212     235678899999999999999999999        9999999999999999999  99


Q ss_pred             CCCCHHHHHH-HHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927          386 ASIDSATDAI-LQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA  454 (467)
Q Consensus       386 s~LD~~~~~~-i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~  454 (467)
                      +.+|+.++.. ++  +.+.. .++|.|+++|++.....+|.|.||++|++     +++++..++.|..++.
T Consensus       164 ~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~  227 (249)
T cd01128         164 ALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWL  227 (249)
T ss_pred             heecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHH
Confidence            9999766543 43  34433 57899999999999999999999999997     6777766667766643

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.82  E-value=7e-20  Score=180.56  Aligned_cols=177  Identities=28%  Similarity=0.449  Sum_probs=139.3

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--------CCCCccEEEEcCEeCCCCCHHHHhcccEEEcCC--C
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--------VEPENGRILIDGLDICSMGLKDLRTKLSIIPQE--P  305 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--------~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~--~  305 (467)
                      .+|+|+||++++|+.++|+|+|||||||++++|+|.        |.|++|.|.+--..++           +.+|-+  |
T Consensus       397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep  465 (593)
T COG2401         397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP  465 (593)
T ss_pred             eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence            589999999999999999999999999999999985        6899999987432221           234442  3


Q ss_pred             ccccccHHHhcCcCCCCCH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927          306 TLFRGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA  384 (467)
Q Consensus       306 ~lf~~tv~enl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp  384 (467)
                      .+=.-|+.|.+.  ....| ....++++.+|+.+....-         ..-..||-|||-|..||+++..+|.+++.||.
T Consensus       466 ~f~~~tilehl~--s~tGD~~~AveILnraGlsDAvlyR---------r~f~ELStGQKeR~KLAkllaerpn~~~iDEF  534 (593)
T COG2401         466 EFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAVLYR---------RKFSELSTGQKERAKLAKLLAERPNVLLIDEF  534 (593)
T ss_pred             ccCchhHHHHHh--hccCchhHHHHHHHhhccchhhhhh---------ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence            322337777763  22222 2345678888887654321         12267999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh--cCEEEEEeCCEEE
Q 044927          385 TASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD--SDMFMVLSYGELV  434 (467)
Q Consensus       385 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv  434 (467)
                      -|.||+.|...+...|.++.  .+.|++++|||.+....  -|+++.+.-|+..
T Consensus       535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            99999999999999998865  58999999999999875  6999998877654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.81  E-value=1.4e-19  Score=209.43  Aligned_cols=209  Identities=18%  Similarity=0.233  Sum_probs=143.5

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------cCCCCCccEEEEcCEeCCCCCH----------HHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------RLVEPENGRILIDGLDICSMGL----------KDLRT  296 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~----------gl~~p~~G~i~i~g~~i~~~~~----------~~~r~  296 (467)
                      =|+|++.+||-|..++|.|.||||||||++-.+          |. +.-+--|.+|-.+|..-+.          .++|+
T Consensus      1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635       1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred             cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence            489999999999999999999999999998544          21 2233457787776643321          23455


Q ss_pred             ccEEEcC------CCcccccc--------------HHHhcCcCC------------CCCHHH-----------------H
Q 044927          297 KLSIIPQ------EPTLFRGS--------------VRTNLDPLG------------MYSDNE-----------------I  327 (467)
Q Consensus       297 ~i~~v~Q------~~~lf~~t--------------v~enl~~~~------------~~~~~~-----------------~  327 (467)
                      -++-.|+      .+..|+-.              +.-++.|.+            .+..+-                 +
T Consensus      1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635       1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred             HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence            4443333      12222111              111111111            111111                 1


Q ss_pred             HHHHHHc----ChHHHHHhC-CCcccc-cccCCCCCCChhHHHHHHHHHHhcCC---CCEEEeeCCCCCCCHHHHHHHHH
Q 044927          328 WEAMEKC----QLKATISRL-PMLLDS-SVSDEGENWSVGQRQLFCLGRVLLKR---NRILVLDEATASIDSATDAILQR  398 (467)
Q Consensus       328 ~~~~~~~----~l~~~i~~l-~~g~~t-~v~~~g~~LSgGq~Qrl~iARal~~~---p~iliLDEpts~LD~~~~~~i~~  398 (467)
                      .++++-.    .+...+..+ ..|+.. .+|+...+|||||.|||-||.-|.++   +.++||||||.||++...+.+.+
T Consensus      1664 ~ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~ 1743 (1809)
T PRK00635       1664 EEVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV 1743 (1809)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH
Confidence            1222221    111111111 124432 57888999999999999999999876   78999999999999999999999


Q ss_pred             HHHHH-CCCceEEEEccChhHHhhcCEEEEEe------CCEEEEecChhhHhccC
Q 044927          399 IIREE-FPGSTVITVAHRVPTITDSDMFMVLS------YGELVEYDLPSKLMETN  446 (467)
Q Consensus       399 ~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~------~G~iv~~g~~~~l~~~~  446 (467)
                      .++++ ..|.|+|+|.|+++.++.||+|+=|-      .|+|++.|+|+++.+..
T Consensus      1744 ~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635       1744 QLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred             HHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence            99886 46899999999999999999999994      68999999999998743

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.81  E-value=6.8e-20  Score=173.99  Aligned_cols=152  Identities=13%  Similarity=0.107  Sum_probs=111.5

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE-EEcCCCccccccHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVR  313 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv~  313 (467)
                      ..+.+|+++++++|++++|.||||+||||+++.+.-                     -.+..++| +||.+...++  +.
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~   73 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV   73 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence            358999999999999999999999999999999981                     12333455 6776543221  11


Q ss_pred             HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--cCCCCEEEeeCC---CCCC
Q 044927          314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILVLDEA---TASI  388 (467)
Q Consensus       314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal--~~~p~iliLDEp---ts~L  388 (467)
                      +.+              +...++.+.+              ...+|.|++|+..+++++  +.+|+++|||||   |+++
T Consensus        74 ~~i--------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l  125 (222)
T cd03285          74 DCI--------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY  125 (222)
T ss_pred             cee--------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence            221              1112222111              246899999999999999  899999999999   9999


Q ss_pred             CHHHHHH-HHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927          389 DSATDAI-LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDL  438 (467)
Q Consensus       389 D~~~~~~-i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~  438 (467)
                      |+..... +.+.+.+ ..++|+|++||..+....||++..+++|++...++
T Consensus       126 D~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         126 DGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             HHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence            9987543 3355543 34789999999755555699999999999987664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.78  E-value=2.3e-19  Score=168.24  Aligned_cols=154  Identities=11%  Similarity=0.069  Sum_probs=103.2

Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl-~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      ..++++.+|++++|+|||||||||++++|.+. +.+..|....           ..+..+++..|....|.  ..+++  
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i--   85 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSI--   85 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Ccccc--
Confidence            34566678999999999999999999999943 2222221110           00122333322211111  01111  


Q ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927          319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR  398 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~  398 (467)
                                                       .++-..++.+++| +..+.+++.+|+++|+||||+++|+.....+..
T Consensus        86 ---------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~  131 (202)
T cd03243          86 ---------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY  131 (202)
T ss_pred             ---------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence                                             1112345666665 666678889999999999999999987766644


Q ss_pred             H-HHHH-CCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhH
Q 044927          399 I-IREE-FPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       399 ~-l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      . ++.. ..+.++|++||+.+.+..+|++..++.|++...++..++
T Consensus       132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~  177 (202)
T cd03243         132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL  177 (202)
T ss_pred             HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence            3 4443 247899999999999999999999999999988876544

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.78  E-value=1.4e-18  Score=170.23  Aligned_cols=75  Identities=20%  Similarity=0.250  Sum_probs=62.1

Q ss_pred             CCCChhHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-c---
Q 044927          356 ENWSVGQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-S---  422 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~---  422 (467)
                      ..+|+||+|++++||+|+         .+|++++|||||++||+.....+.+.+.+..   .+++++|+...+.. |   
T Consensus       182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~  258 (270)
T cd03242         182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRR  258 (270)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccC
Confidence            457999999999999985         7999999999999999999999999997653   45555555554443 5   


Q ss_pred             CEEEEEeCCEE
Q 044927          423 DMFMVLSYGEL  433 (467)
Q Consensus       423 d~i~vl~~G~i  433 (467)
                      ++++.+++|+|
T Consensus       259 ~~i~~l~~g~i  269 (270)
T cd03242         259 AQIFRVDAGTL  269 (270)
T ss_pred             ccEEEEeCcEE
Confidence            78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.76  E-value=1.9e-18  Score=161.48  Aligned_cols=143  Identities=17%  Similarity=0.146  Sum_probs=95.6

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHH
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRT  314 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e  314 (467)
                      ++++|++++.  |++++|+||||||||||+|+|.|...     +...|.++...         .+++|...+|. .|+.|
T Consensus        15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d   78 (199)
T cd03283          15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD   78 (199)
T ss_pred             eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence            4788887664  79999999999999999999987543     12356554321         25667555664 58999


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA  394 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~  394 (467)
                      |+.........+..      .+.+.++.+.                            ..+|+++|+||||+++|+....
T Consensus        79 ~l~~~~s~~~~e~~------~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~~  124 (199)
T cd03283          79 DLRDGISYFYAELR------RLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRERQ  124 (199)
T ss_pred             ccccccChHHHHHH------HHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHHH
Confidence            99643222122211      1223333321                            0799999999999999999876


Q ss_pred             HHHH-HHHHH-CCCceEEEEccChhHHhh---cCEEEEE
Q 044927          395 ILQR-IIREE-FPGSTVITVAHRVPTITD---SDMFMVL  428 (467)
Q Consensus       395 ~i~~-~l~~~-~~~~tvi~itH~l~~~~~---~d~i~vl  428 (467)
                      .+.. .++.. ..+.|+|++||+++.+..   .++|-.+
T Consensus       125 ~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~  163 (199)
T cd03283         125 AASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY  163 (199)
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence            6543 45553 347899999999988764   4455444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=6.8e-19  Score=174.27  Aligned_cols=206  Identities=21%  Similarity=0.324  Sum_probs=134.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHH---
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDL---  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p~~G~i~i~g~~i~~~~~~~~---  294 (467)
                      .|.++|.+.+-.+  +..+.|.|+.|-.|..+++|||||-|||||++-|+.  +--|..=.++++.+.+-.-+...+   
T Consensus       264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv  341 (807)
T KOG0066|consen  264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV  341 (807)
T ss_pred             cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence            4788888887643  347899999999999999999999999999999973  333444455555554422111100   


Q ss_pred             ----hcccEEEcCCCccc----cc--cHHHhcCcCCCCCHHHHHHHHHHcChH-------HHHHhCCCcccccccCCC-C
Q 044927          295 ----RTKLSIIPQEPTLF----RG--SVRTNLDPLGMYSDNEIWEAMEKCQLK-------ATISRLPMLLDSSVSDEG-E  356 (467)
Q Consensus       295 ----r~~i~~v~Q~~~lf----~~--tv~enl~~~~~~~~~~~~~~~~~~~l~-------~~i~~l~~g~~t~v~~~g-~  356 (467)
                          .++..++-.+..|.    .|  |+.|-+        +++..-++..|..       ..+..  .|++-.+-++. .
T Consensus       342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl--------~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~  411 (807)
T KOG0066|consen  342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERL--------KEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTT  411 (807)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH--------HHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCcc
Confidence                01111111111110    00  222211        0111112222211       11111  24444444443 6


Q ss_pred             CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-
Q 044927          357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-  434 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-  434 (467)
                      .+|||.|-||+|||||...|-+|.|||||++||....--+-+.|+.+  .+|.++|+|+-.++.. |..|+.|++-++- 
T Consensus       412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy  489 (807)
T KOG0066|consen  412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY  489 (807)
T ss_pred             ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence            79999999999999999999999999999999998777777777766  4799999999999987 9999999988764 


Q ss_pred             EecCh
Q 044927          435 EYDLP  439 (467)
Q Consensus       435 ~~g~~  439 (467)
                      ..|++
T Consensus       490 YrGNY  494 (807)
T KOG0066|consen  490 YRGNY  494 (807)
T ss_pred             hcchH
Confidence            34444

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.72  E-value=1.6e-17  Score=184.83  Aligned_cols=99  Identities=25%  Similarity=0.296  Sum_probs=89.6

Q ss_pred             ccccc-ccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh
Q 044927          346 LLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD  421 (467)
Q Consensus       346 g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~  421 (467)
                      |++.. ++....+|||||+||+.|||||..+|  +++||||||++||+.....+.+.|+++. +|.|||+|+|+++.+..
T Consensus       475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~  554 (924)
T TIGR00630       475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA  554 (924)
T ss_pred             cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence            45433 56777899999999999999999986  8999999999999999999999999864 48999999999999999


Q ss_pred             cCEEEEE------eCCEEEEecChhhHhc
Q 044927          422 SDMFMVL------SYGELVEYDLPSKLME  444 (467)
Q Consensus       422 ~d~i~vl------~~G~iv~~g~~~~l~~  444 (467)
                      ||+|++|      ++|+|++.|+++++..
T Consensus       555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~  583 (924)
T TIGR00630       555 ADYVIDIGPGAGIHGGEVVASGTPEEILA  583 (924)
T ss_pred             CCEEEEecccccCCCCEEeeccCHHHHhc
Confidence            9999999      8999999999999864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.72  E-value=3.7e-17  Score=158.93  Aligned_cols=142  Identities=18%  Similarity=0.267  Sum_probs=104.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHH
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG-LKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI  327 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~  327 (467)
                      ..++|+||||||||||++.|+|+++|++|+|.++|+++...+ ..++...++++||...--..++.+|..      ..+ 
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~~-  184 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KAE-  184 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HHH-
Confidence            678999999999999999999999999999999999998664 467777889999965332334444420      000 


Q ss_pred             HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCc
Q 044927          328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGS  407 (467)
Q Consensus       328 ~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~  407 (467)
                                                       |   ...++|+  .+|+++++|||++      ...+...++....|.
T Consensus       185 ---------------------------------~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~  220 (270)
T TIGR02858       185 ---------------------------------G---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGV  220 (270)
T ss_pred             ---------------------------------H---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCC
Confidence                                             1   1344444  4999999999974      233444444445689


Q ss_pred             eEEEEccChhH--H------------hhcCEEEEEeCCEEEEecChhhHh
Q 044927          408 TVITVAHRVPT--I------------TDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       408 tvi~itH~l~~--~------------~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |+|+++|+.+.  +            ..+||+++|++|+  ..|+++++.
T Consensus       221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~  268 (270)
T TIGR02858       221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY  268 (270)
T ss_pred             EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence            99999997655  3            2389999999887  677776654

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.72  E-value=1.7e-17  Score=184.94  Aligned_cols=100  Identities=25%  Similarity=0.298  Sum_probs=90.4

Q ss_pred             ccccc-ccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh
Q 044927          346 LLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD  421 (467)
Q Consensus       346 g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~  421 (467)
                      |++.. .+....+|||||+|||+|||||..+|  +++||||||++||+.....+.+.|+++. .|.|||+|+|+++.+..
T Consensus       477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~  556 (943)
T PRK00349        477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA  556 (943)
T ss_pred             ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence            55433 56677899999999999999999997  9999999999999999999999999864 48999999999999988


Q ss_pred             cCEEEEE------eCCEEEEecChhhHhcc
Q 044927          422 SDMFMVL------SYGELVEYDLPSKLMET  445 (467)
Q Consensus       422 ~d~i~vl------~~G~iv~~g~~~~l~~~  445 (467)
                      ||+|++|      ++|+|+..|+++++.+.
T Consensus       557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~  586 (943)
T PRK00349        557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN  586 (943)
T ss_pred             CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence            9999999      99999999999998653

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.70  E-value=7.8e-17  Score=159.63  Aligned_cols=192  Identities=24%  Similarity=0.331  Sum_probs=138.5

Q ss_pred             EEeCCCCCceecceeEEEeCCc-----EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927          228 VRYRPNTPLVLKGITCTFKEGT-----RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP  302 (467)
Q Consensus       228 ~~y~~~~~~~L~~isl~i~~Ge-----~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~  302 (467)
                      +.|++.. ..+.+..|.|+.|+     ++..+|.||.||||++++++|..+|++|.      ++..+       .++|=|
T Consensus       343 y~Yp~m~-k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp  408 (592)
T KOG0063|consen  343 YSYPKMK-KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP  408 (592)
T ss_pred             eccCcce-eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence            4565443 36889999999885     68899999999999999999999998762      22222       477888


Q ss_pred             CCCc-cccccHHHhcCc--CCCCCHHH-HHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          303 QEPT-LFRGSVRTNLDP--LGMYSDNE-IWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       303 Q~~~-lf~~tv~enl~~--~~~~~~~~-~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      |... =|.+|||+-+.-  ...+.+.+ +.++++...+           +..++....+||||+.||+++|-+|=+.+++
T Consensus       409 qkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i-----------e~i~dqevq~lSggelQRval~KOGGKpAdv  477 (592)
T KOG0063|consen  409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI-----------ENIIDQEVQGLSGGELQRVALALCLGKPADV  477 (592)
T ss_pred             cccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH-----------HHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence            8654 477898886631  01111111 2223333333           3334445578999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHH--HCCCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHhc
Q 044927          379 LVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLME  444 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~--~~~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~  444 (467)
                      ++.|||.+-||.+.+..--..+++  +..++|-.+|.|++-.... +||++|.+.  +.....-+|+.|++
T Consensus       478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~  548 (592)
T KOG0063|consen  478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA  548 (592)
T ss_pred             EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence            999999999999988777777766  3457999999999887765 999999974  22333445556654

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.69  E-value=1.4e-16  Score=149.28  Aligned_cols=138  Identities=16%  Similarity=0.093  Sum_probs=95.0

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE-EEcCCCccccccHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS-IIPQEPTLFRGSVR  313 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv~  313 (467)
                      ..+.+|+++++++|+.++|.||||+||||+++.+.++.                     +..++| +||-..  ..-++.
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~   72 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF   72 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence            35899999999999999999999999999999998873                     222333 222211  122455


Q ss_pred             HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927          314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD  393 (467)
Q Consensus       314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~  393 (467)
                      |+|...-.                         .+..+.++...+|+|++|+ ..+-+++.+|+++|||||++|+|+...
T Consensus        73 d~I~~~~~-------------------------~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~  126 (204)
T cd03282          73 NRLLSRLS-------------------------NDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG  126 (204)
T ss_pred             hheeEecC-------------------------CccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence            66521100                         0111122336789999975 455567899999999999999999764


Q ss_pred             HHH-HHHHHHH-CCCceEEEEccChhHHhh
Q 044927          394 AIL-QRIIREE-FPGSTVITVAHRVPTITD  421 (467)
Q Consensus       394 ~~i-~~~l~~~-~~~~tvi~itH~l~~~~~  421 (467)
                      ..+ ...++.+ ..++++|++||+.+.+..
T Consensus       127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~  156 (204)
T cd03282         127 FAISLAILECLIKKESTVFFATHFRDIAAI  156 (204)
T ss_pred             HHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence            443 3334443 248999999999998775

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.68  E-value=4e-17  Score=135.53  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=70.0

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      .+|++++|++++|+.++|+||||||||||++++.      +|++.++|.|+..++..+.++.++++||+  +|.+||+||
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N   74 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN   74 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence            4899999999999999999999999999999986      89999999999999888888889999888  999999999


Q ss_pred             cCc
Q 044927          316 LDP  318 (467)
Q Consensus       316 l~~  318 (467)
                      |.+
T Consensus        75 i~~   77 (107)
T cd00820          75 IFL   77 (107)
T ss_pred             cee
Confidence            964

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.66  E-value=2.7e-16  Score=148.79  Aligned_cols=156  Identities=12%  Similarity=0.137  Sum_probs=102.2

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVR  313 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~  313 (467)
                      +.+.+|++++.++ ++++|+|||||||||+++.+.+..-.  |+   .|..+   +.  .+..++++.|   +|. .++.
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~   83 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---PA--SKAEIGVVDR---IFTRIGAS   83 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---cc--ccceecceee---EeccCCch
Confidence            3488999999887 99999999999999999999875422  11   11111   11  1234566644   232 2344


Q ss_pred             HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--cCCCCEEEeeCC---CCCC
Q 044927          314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILVLDEA---TASI  388 (467)
Q Consensus       314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal--~~~p~iliLDEp---ts~L  388 (467)
                      ||+...                                      .|.=...+..+++++  +.+|+++|||||   |+++
T Consensus        84 ~~ls~g--------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l  125 (216)
T cd03284          84 DDLAGG--------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTY  125 (216)
T ss_pred             hhhccC--------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence            444211                                      011122223454444  469999999999   9999


Q ss_pred             CHHH-HHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927          389 DSAT-DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       389 D~~~-~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      |+.. ...+.+.+.+. .++|+|++||+.+....+|++..+++|++...++.+++.
T Consensus       126 D~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~  180 (216)
T cd03284         126 DGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVV  180 (216)
T ss_pred             HHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence            9865 24455555442 378999999998777778888778889988777766663

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR00606 rad50 rad50

Probab=99.61  E-value=3.9e-15  Score=174.15  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=101.9

Q ss_pred             cccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH------HHHHHHHhcCCCCEEE
Q 044927          307 LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ------LFCLGRVLLKRNRILV  380 (467)
Q Consensus       307 lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q------rl~iARal~~~p~ili  380 (467)
                      .|+||+.+||.+.++.+++  +.+++.++...++..+|.| ++.++..| .|||||||      |++||||++.+|++|+
T Consensus      1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606      1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred             HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence            4899999999874445544  6788889999999999999 89888775 89999999      9999999999999999


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHH------CCCceEEEEccChhHHhh------cCEEEEEe
Q 044927          381 LDEATASIDSATDAILQRIIREE------FPGSTVITVAHRVPTITD------SDMFMVLS  429 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~------~~~~tvi~itH~l~~~~~------~d~i~vl~  429 (467)
                      |||||++||+.+...+.+.|...      ..+.|+|+|||++..+..      ||+.+-+.
T Consensus      1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606      1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred             eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence            99999999999999888888764      136899999999998763      56766554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.61  E-value=1.2e-13  Score=132.40  Aligned_cols=171  Identities=15%  Similarity=0.242  Sum_probs=140.1

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.+++.+...+..++..++.+++.++++++++|+++++++.+.++..++...+.+..++..+...+..++..
T Consensus       101 ~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (275)
T PF00664_consen  101 LSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELN  180 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccc
Confidence            37899999999999999999999999999999999999999999998877777777777778777777777778888999


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HhCCCccHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--V-LLPGKHLPGF  157 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~g~  157 (467)
                      +.+.|.++|+++||+|+.|+++.+++.+..++..+...+......+.......+..+...++..+.  . ...|.+++|.
T Consensus       181 ~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~  260 (275)
T PF00664_consen  181 SFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGT  260 (275)
T ss_dssp             HHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHH
T ss_pred             cccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence            999999999999999999999999999999888777777666666666655555554333333332  2 2448899999


Q ss_pred             HHHHHHHHHHHHHH
Q 044927          158 VGLSLSYALTLSSI  171 (467)
Q Consensus       158 ~~~~~~~~~~l~~~  171 (467)
                      +.++..+...+..|
T Consensus       261 ~~~~~~~~~~~~~p  274 (275)
T PF00664_consen  261 LVAFLSLSSQLINP  274 (275)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            98888888777655

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.60  E-value=3.7e-15  Score=141.46  Aligned_cols=73  Identities=26%  Similarity=0.378  Sum_probs=59.5

Q ss_pred             CCChhHHHHHHHHHHh----cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEe
Q 044927          357 NWSVGQRQLFCLGRVL----LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS  429 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~  429 (467)
                      .||||||-+++||--|    ..++|++|||||.++||+.....+.+.|++..++.-+|++||+......||+.+.+.
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~  212 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT  212 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7999999999998554    467899999999999999999999999999888889999999999999999887664

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK00064 recF recombination protein F; Reviewed

Probab=99.57  E-value=3.3e-14  Score=144.79  Aligned_cols=76  Identities=22%  Similarity=0.364  Sum_probs=66.1

Q ss_pred             CCCChhHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh---cC
Q 044927          356 ENWSVGQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD---SD  423 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~---~d  423 (467)
                      ..+|.||+|++++|++++         .+|++++||||+++||+.....+.+.+.+.  +..+++++|+.+.+..   .+
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~  349 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA  349 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence            468999999999999985         799999999999999999999999888753  4588999998876554   46


Q ss_pred             EEEEEeCCEE
Q 044927          424 MFMVLSYGEL  433 (467)
Q Consensus       424 ~i~vl~~G~i  433 (467)
                      +++.+++|+|
T Consensus       350 ~i~~v~~G~i  359 (361)
T PRK00064        350 KIFHVEQGKI  359 (361)
T ss_pred             cEEEEeCCEE
Confidence            8999999997

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.54  E-value=3.9e-14  Score=133.77  Aligned_cols=134  Identities=16%  Similarity=0.148  Sum_probs=89.2

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc--ccH
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR--GSV  312 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~--~tv  312 (467)
                      +-+|++++=..+.+++|.||||+||||+++.+..  .. +..|......           ...++|..|...-+.  .|+
T Consensus        18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si   85 (213)
T cd03281          18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV   85 (213)
T ss_pred             EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence            4455555422237899999999999999999983  33 4556654332           124677777543221  122


Q ss_pred             HHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927          313 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT  392 (467)
Q Consensus       313 ~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~  392 (467)
                      .+++                    ..|                    .-+-||+++|++++.+|+++|||||++|+|+..
T Consensus        86 ~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~  125 (213)
T cd03281          86 SSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED  125 (213)
T ss_pred             hhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence            2222                    111                    234589999999999999999999999999975


Q ss_pred             -HHHHHHHHHHHC-C---CceEEEEccChhHHhhc
Q 044927          393 -DAILQRIIREEF-P---GSTVITVAHRVPTITDS  422 (467)
Q Consensus       393 -~~~i~~~l~~~~-~---~~tvi~itH~l~~~~~~  422 (467)
                       .......++.+. .   +.++|++||+++.++..
T Consensus       126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         126 GAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence             444445555542 2   24899999999987753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.52  E-value=2.2e-13  Score=140.76  Aligned_cols=174  Identities=20%  Similarity=0.254  Sum_probs=115.3

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe---CCC-----CCHHHHhcccEEEcC--CC
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD---ICS-----MGLKDLRTKLSIIPQ--EP  305 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~---i~~-----~~~~~~r~~i~~v~Q--~~  305 (467)
                      .+++++ +++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|++   +.+     ++...+++.+.++.+  +|
T Consensus       147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~  225 (438)
T PRK07721        147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP  225 (438)
T ss_pred             hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC
Confidence            489999 9999999999999999999999999999999999999996543   442     344457778888865  22


Q ss_pred             ccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCC-hhHHHH-HHHHHHhcCCCCEEEeeC
Q 044927          306 TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS-VGQRQL-FCLGRVLLKRNRILVLDE  383 (467)
Q Consensus       306 ~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS-gGq~Qr-l~iARal~~~p~iliLDE  383 (467)
                      .+                 +++..+...+.+.++...  .|.|-.+--  .+++ --|.|| +++   .+.+||      
T Consensus       226 ~~-----------------~r~~~~~~a~~iAEyfr~--~g~~Vll~~--Dsltr~A~A~rEisl---~~ge~P------  275 (438)
T PRK07721        226 AL-----------------MRIKGAYTATAIAEYFRD--QGLNVMLMM--DSVTRVAMAQREIGL---AVGEPP------  275 (438)
T ss_pred             HH-----------------HHHHHHHHHHHHHHHHHH--CCCcEEEEE--eChHHHHHHHHHHHH---hcCCCC------
Confidence            21                 111111111111222221  132221110  0111 001111 111   123443      


Q ss_pred             CCCCCCHHHHHHHHHHHHHHC---CCc-----eEEEEccChhHHhhcCEEEEEeCCEEEEecChhh
Q 044927          384 ATASIDSATDAILQRIIREEF---PGS-----TVITVAHRVPTITDSDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       384 pts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~  441 (467)
                      .|+|+||.....+.+.+++..   +|.     ||++.+|+++. ..||++.++.+|+|+.+++..+
T Consensus       276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence            578999999999999998864   465     99999999985 6699999999999999987654

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.51  E-value=1.6e-14  Score=155.97  Aligned_cols=91  Identities=18%  Similarity=0.324  Sum_probs=80.3

Q ss_pred             hCCCcccccccCCC------CCCChhHHHHHHHHHHhc----------CCCCEEEeeCCC-CCCCHHHHHHHHHHHHHHC
Q 044927          342 RLPMLLDSSVSDEG------ENWSVGQRQLFCLGRVLL----------KRNRILVLDEAT-ASIDSATDAILQRIIREEF  404 (467)
Q Consensus       342 ~l~~g~~t~v~~~g------~~LSgGq~Qrl~iARal~----------~~p~iliLDEpt-s~LD~~~~~~i~~~l~~~~  404 (467)
                      .+|.++++.+++.|      .+||||||||++|||||+          .+|+++|||||| ++||+.+...+.+.|.+. 
T Consensus       447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-  525 (562)
T PHA02562        447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-  525 (562)
T ss_pred             EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-
Confidence            45777777777766      689999999999999987          599999999998 789999999999999988 


Q ss_pred             CCceEEEEccChhHHhhcCEEEEEeC-CEE
Q 044927          405 PGSTVITVAHRVPTITDSDMFMVLSY-GEL  433 (467)
Q Consensus       405 ~~~tvi~itH~l~~~~~~d~i~vl~~-G~i  433 (467)
                      ++.|+|+|||+......||++++|++ |+.
T Consensus       526 ~~~~iiiish~~~~~~~~d~~~~l~~~~~~  555 (562)
T PHA02562        526 KDTNVFVISHKDHDPQKFDRHLKMEKVGRF  555 (562)
T ss_pred             CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence            78999999999888888999999986 543

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.50  E-value=2.8e-14  Score=131.87  Aligned_cols=68  Identities=12%  Similarity=0.148  Sum_probs=49.8

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHC--CCceEEEEccChhHHhhcCE
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ-RIIREEF--PGSTVITVAHRVPTITDSDM  424 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~l~~~~~~d~  424 (467)
                      ..+|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++...  .++++|++||+.+....+|+
T Consensus        60 s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~  130 (185)
T smart00534       60 STFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE  130 (185)
T ss_pred             cHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence            5678888874333332 3499999999999999998766654 4445443  37899999999986666764

>TIGR01069 mutS2 MutS2 family protein

Probab=99.48  E-value=7.3e-14  Score=154.08  Aligned_cols=145  Identities=19%  Similarity=0.215  Sum_probs=97.3

Q ss_pred             cEEEEeEEEEeCCCCCceec-----ceeEEEeCC-cEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHH
Q 044927          220 RIELEDLKVRYRPNTPLVLK-----GITCTFKEG-TRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLK  292 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~-----~isl~i~~G-e~~~ivG~sGsGKSTll~~l~gl-~~p~~G~i~i~g~~i~~~~~~  292 (467)
                      .+.++++..       |.++     .+|+++.++ ++++|.||||+||||+++++.|. +.+..|               
T Consensus       295 ~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G---------------  352 (771)
T TIGR01069       295 KIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG---------------  352 (771)
T ss_pred             CEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC---------------
Confidence            467766543       2343     378888877 99999999999999999999987 333333               


Q ss_pred             HHhcccEEEcCCCc-cccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          293 DLRTKLSIIPQEPT-LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       293 ~~r~~i~~v~Q~~~-lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                            .+||.... .+  .+.+++.  ....+++            .+           .++-.++|+|++|+..++++
T Consensus       353 ------~~Vpa~~~~~~--~~~d~i~--~~i~~~~------------si-----------~~~LStfS~~m~~~~~il~~  399 (771)
T TIGR01069       353 ------IPIPANEHSEI--PYFEEIF--ADIGDEQ------------SI-----------EQNLSTFSGHMKNISAILSK  399 (771)
T ss_pred             ------CCccCCccccc--cchhhee--eecChHh------------HH-----------hhhhhHHHHHHHHHHHHHHh
Confidence                  14444321 11  1122221  0111110            01           11225689999999999988


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHH-HHHHHH-CCCceEEEEccChhHHh
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQ-RIIREE-FPGSTVITVAHRVPTIT  420 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~-~~~~tvi~itH~l~~~~  420 (467)
                      + .+|+++|||||++|+||.....+. ..++.+ ..++++|++||..+...
T Consensus       400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            7 789999999999999999877774 445443 35889999999987643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR00634 recN DNA repair protein RecN

Probab=99.43  E-value=2.6e-13  Score=146.06  Aligned_cols=77  Identities=14%  Similarity=0.151  Sum_probs=71.8

Q ss_pred             CCCChhHHHHHHHHHHhcCC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCC
Q 044927          356 ENWSVGQRQLFCLGRVLLKR----NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYG  431 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G  431 (467)
                      ..|||||+||++|||+++..    |+++||||||++||+.+...+.+.|++..+++|||+|||++..+..||++++|++|
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~  518 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE  518 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence            46899999999999999985    69999999999999999999999999987789999999999999889999999987


Q ss_pred             E
Q 044927          432 E  432 (467)
Q Consensus       432 ~  432 (467)
                      .
T Consensus       519 ~  519 (563)
T TIGR00634       519 G  519 (563)
T ss_pred             c
Confidence            5

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.43  E-value=1.2e-13  Score=130.49  Aligned_cols=43  Identities=14%  Similarity=0.226  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHhcCCCCEEEeeCCC-----CCCCHHHHHHHHHHHHHH
Q 044927          361 GQRQLFCLGRVLLKRNRILVLDEAT-----ASIDSATDAILQRIIREE  403 (467)
Q Consensus       361 Gq~Qrl~iARal~~~p~iliLDEpt-----s~LD~~~~~~i~~~l~~~  403 (467)
                      -|++++.|||+++.+|+++++||||     ++||+.+.+.+.+.++++
T Consensus       156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            3999999999999999999999999     999999999999999886

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.43  E-value=1.1e-13  Score=137.42  Aligned_cols=173  Identities=24%  Similarity=0.315  Sum_probs=111.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC--ccccccHHHhcCcCCCC-
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLGMY-  322 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~--~lf~~tv~enl~~~~~~-  322 (467)
                      .+|+..++||.||-||||-++.++|-.+|.-|.-- ++        .+|..-++|.--.-  ..|.--+.+|+.-.... 
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p--------p~w~~il~~frgselq~yftk~le~~lk~~~kpQ  168 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP--------PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ  168 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC--------cchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence            68999999999999999999999999999877531 11        11222222211000  01111223333210000 


Q ss_pred             CHHHHHHH------------HHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927          323 SDNEIWEA------------MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS  390 (467)
Q Consensus       323 ~~~~~~~~------------~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~  390 (467)
                      .-+.+-++            .+.-.....+..+.  ++.........||||+-||.+||.+.++++++.++|||.+-||.
T Consensus       169 yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~--L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDV  246 (592)
T KOG0063|consen  169 YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLD--LNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV  246 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH--HhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchH
Confidence            00000000            11111112222211  22233334578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEe
Q 044927          391 ATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLS  429 (467)
Q Consensus       391 ~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~  429 (467)
                      +.+..-...|+.+ ..++-+|+|.|+++.+.. +|-|.++.
T Consensus       247 KQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  247 KQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             HHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence            9998888889886 458999999999999886 88888886

>PRK10869 recombination and repair protein; Provisional

Probab=99.39  E-value=9e-13  Score=140.95  Aligned_cols=76  Identities=18%  Similarity=0.228  Sum_probs=71.0

Q ss_pred             CCChhHHHHHHHHHHhcC----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          357 NWSVGQRQLFCLGRVLLK----RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      .+||||+||++|||+++.    +|+++|||||++|||+.+...+.+.+++..++.|+|+|||++..+..||+.++++++.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~  509 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET  509 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence            579999999999999996    6899999999999999999999999999877899999999999988899999999854

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.36  E-value=4e-12  Score=120.52  Aligned_cols=138  Identities=14%  Similarity=0.087  Sum_probs=84.8

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR  313 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~  313 (467)
                      ..+.+|+++++++|++++|.||||+||||+++.+++ .+.+..|...... .          -.+++..|=..  .....
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i~~--~~~~~   84 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSVLT--RMGAS   84 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceEEE--EecCc
Confidence            358999999999999999999999999999999999 6777788764432 1          12444333111  11112


Q ss_pred             HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927          314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD  393 (467)
Q Consensus       314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~  393 (467)
                      |++...                ...|.                    .+-+|++-.---+.+|+++|||||.+|.|+...
T Consensus        85 d~~~~~----------------~StF~--------------------~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~  128 (222)
T cd03287          85 DSIQHG----------------MSTFM--------------------VELSETSHILSNCTSRSLVILDELGRGTSTHDG  128 (222)
T ss_pred             cccccc----------------cchHH--------------------HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence            222110                00010                    111222222222457999999999888876544


Q ss_pred             HHH-HHHHHHHC--CCceEEEEccChhHHhh
Q 044927          394 AIL-QRIIREEF--PGSTVITVAHRVPTITD  421 (467)
Q Consensus       394 ~~i-~~~l~~~~--~~~tvi~itH~l~~~~~  421 (467)
                      ..+ ...++.+.  .++|+|++||+.+....
T Consensus       129 ~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         129 IAIAYATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            433 33333322  47899999999987553

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13695 putative NTPase; Provisional

Probab=99.30  E-value=2.2e-12  Score=117.94  Aligned_cols=78  Identities=14%  Similarity=0.063  Sum_probs=63.2

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDE--ATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGEL  433 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDE--pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i  433 (467)
                      ..+||+++-+..+++..+.+|+++++||  |+.++|+...+.+.+.+   ..++++|+++|+-.....+|+|..+.+|+|
T Consensus        77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i  153 (174)
T PRK13695         77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRV  153 (174)
T ss_pred             EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence            4689999999999999999999999999  55566655555554444   247899999999655567999999999999


Q ss_pred             EEe
Q 044927          434 VEY  436 (467)
Q Consensus       434 v~~  436 (467)
                      .+.
T Consensus       154 ~~~  156 (174)
T PRK13695        154 YEL  156 (174)
T ss_pred             EEE
Confidence            876

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.30  E-value=7.9e-12  Score=138.43  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH-HHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI-IREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      .++|+|++|++.|++++ .+|+++|||||++|+||.....+... +..+ ..++++|++||..+.... +|+..++ ++.
T Consensus       389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~  466 (782)
T PRK00409        389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE-NAS  466 (782)
T ss_pred             hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEE
Confidence            67899999999999999 89999999999999999887766543 4443 347899999999887765 4554443 444


Q ss_pred             EE
Q 044927          433 LV  434 (467)
Q Consensus       433 iv  434 (467)
                      +.
T Consensus       467 ~~  468 (782)
T PRK00409        467 VE  468 (782)
T ss_pred             EE
Confidence            43

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.28  E-value=1.8e-11  Score=130.51  Aligned_cols=96  Identities=25%  Similarity=0.319  Sum_probs=85.1

Q ss_pred             ccCCCCCCChhHHHHHHHHHHhcCC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEE
Q 044927          351 VSDEGENWSVGQRQLFCLGRVLLKR--NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMV  427 (467)
Q Consensus       351 v~~~g~~LSgGq~Qrl~iARal~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v  427 (467)
                      +.....+|||||.||+-||.-+-.+  -=+++||||+.||=+.--.++.+.|++++ .|.|+|+|.|+.++++.||+|+=
T Consensus       475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iID  554 (935)
T COG0178         475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIID  554 (935)
T ss_pred             ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEe
Confidence            4566789999999999999999776  35789999999999988888888888865 49999999999999999999998


Q ss_pred             E------eCCEEEEecChhhHhccC
Q 044927          428 L------SYGELVEYDLPSKLMETN  446 (467)
Q Consensus       428 l------~~G~iv~~g~~~~l~~~~  446 (467)
                      |      ..|+|+++|+|+++++..
T Consensus       555 iGPgAG~~GGeIv~~Gtp~~i~~~~  579 (935)
T COG0178         555 IGPGAGEHGGEIVAEGTPEELLANP  579 (935)
T ss_pred             eCCCCCcCCCEEEEccCHHHHHhCC
Confidence            8      478999999999999754

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.28  E-value=3.1e-11  Score=115.40  Aligned_cols=158  Identities=12%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHH-HHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTL-ISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTl-l~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      +.++++...+++           .+++|+++.|.|++||||||+ ++.+.++.++....+++...    .++.++.+++.
T Consensus         8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~~~~~~   72 (230)
T PRK08533          8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEFIKQMM   72 (230)
T ss_pred             EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHH
Confidence            556666655532           279999999999999999999 68999887765444444421    11122111110


Q ss_pred             EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc----CC
Q 044927          300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL----KR  375 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~----~~  375 (467)
                                     ++   + ..            ++++...  ..+. .+. -...+|+++.++-.+.+.+-    .+
T Consensus        73 ---------------~~---g-~~------------~~~~~~~--~~l~-~~~-~~~~~~~~~~~~~~l~~il~~~~~~~  117 (230)
T PRK08533         73 ---------------SL---G-YD------------INKKLIS--GKLL-YIP-VYPLLSGNSEKRKFLKKLMNTRRFYE  117 (230)
T ss_pred             ---------------Hh---C-Cc------------hHHHhhc--CcEE-EEE-ecccccChHHHHHHHHHHHHHHHhcC
Confidence                           00   0 00            0000000  0000 000 00124566555544444433    36


Q ss_pred             CCEEEeeCCCCCC----CHHHHHHHHHHHHHHC-CCceEEEEccChhHH--------hh-cCEEEEEe
Q 044927          376 NRILVLDEATASI----DSATDAILQRIIREEF-PGSTVITVAHRVPTI--------TD-SDMFMVLS  429 (467)
Q Consensus       376 p~iliLDEpts~L----D~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~--------~~-~d~i~vl~  429 (467)
                      |+++++||||+++    |+...+.+.+.++.+. .++|+++ ||+....        +. ||-|+.|+
T Consensus       118 ~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        118 KDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             CCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence            9999999999999    7777777888887764 3676655 5554321        22 68888887

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.26  E-value=8.4e-12  Score=124.53  Aligned_cols=143  Identities=17%  Similarity=0.142  Sum_probs=99.1

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG  320 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~  320 (467)
                      +++.+++|+.++|+||+|||||||+++|+++++|..|.+.++.  ..++.... +..+.++.+..          -..  
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~----------~~~--  201 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKG----------GQG--  201 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCC----------CCC--
Confidence            4567889999999999999999999999999999999888752  33332211 11122111100          000  


Q ss_pred             CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHH
Q 044927          321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII  400 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l  400 (467)
                                                            +++....-.++++|-.+|+++++|||.+       ....+.+
T Consensus       202 --------------------------------------~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l  236 (308)
T TIGR02788       202 --------------------------------------LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFI  236 (308)
T ss_pred             --------------------------------------cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence                                                  0000112245567788999999999996       2344555


Q ss_pred             HHHCCC-ceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927          401 REEFPG-STVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       401 ~~~~~~-~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +....| .+++.++|..+.....||+..|..|++...|.+.+.+
T Consensus       237 ~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence            554444 4679999999977779999999999999999888876

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR00618 sbcc exonuclease SbcC

Probab=99.24  E-value=1.8e-11  Score=140.82  Aligned_cols=78  Identities=17%  Similarity=0.074  Sum_probs=70.7

Q ss_pred             CCCCCChhHHHHHHHHHHhcC----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-
Q 044927          354 EGENWSVGQRQLFCLGRVLLK----------RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-  421 (467)
Q Consensus       354 ~g~~LSgGq~Qrl~iARal~~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-  421 (467)
                      ...+|||||++|++||+||+.          +|++|||||||++||+.+...+.+.|..+. .|++|++|||.++.... 
T Consensus       947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618       947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence            457899999999999999985          799999999999999999999999998864 58999999999998876 


Q ss_pred             cCEEEEEeCC
Q 044927          422 SDMFMVLSYG  431 (467)
Q Consensus       422 ~d~i~vl~~G  431 (467)
                      +|+|.|++.|
T Consensus      1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618      1027 PHRILVKKTN 1036 (1042)
T ss_pred             CCEEEEEECC
Confidence            8999999864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.21  E-value=6.6e-11  Score=109.01  Aligned_cols=80  Identities=11%  Similarity=0.091  Sum_probs=60.6

Q ss_pred             ccCCCCCCChhHHH------HHHHHHHhcCCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHC-CCceEEEEccChhH--
Q 044927          351 VSDEGENWSVGQRQ------LFCLGRVLLKRNRILVLDEATASID---SATDAILQRIIREEF-PGSTVITVAHRVPT--  418 (467)
Q Consensus       351 v~~~g~~LSgGq~Q------rl~iARal~~~p~iliLDEpts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--  418 (467)
                      .......+|+|++|      +...+.+...+|+++++|||++.+|   ......+.+.++... .|.|+|+++|....  
T Consensus        65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~  144 (187)
T cd01124          65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG  144 (187)
T ss_pred             EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence            33444678999998      4444555567999999999999999   666777777776643 48899999998764  


Q ss_pred             -------Hhh-cCEEEEEeC
Q 044927          419 -------ITD-SDMFMVLSY  430 (467)
Q Consensus       419 -------~~~-~d~i~vl~~  430 (467)
                             +.. ||.|+.|+.
T Consensus       145 ~~~~~~~~~~~aD~ii~l~~  164 (187)
T cd01124         145 TGFGGGDVEYLVDGVIRLRL  164 (187)
T ss_pred             cccCcCceeEeeeEEEEEEE
Confidence                   444 899999973

A related protein is found in archaea.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.20  E-value=1.1e-10  Score=120.14  Aligned_cols=168  Identities=15%  Similarity=0.162  Sum_probs=117.0

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      +.++-++++..|..+ ..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|+.-.           
T Consensus       129 ~~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~-----------  195 (432)
T PRK06793        129 HAFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR-----------  195 (432)
T ss_pred             CchheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----------
Confidence            346777888777643 3478885 999999999999999999999999999999999988877664321           


Q ss_pred             EEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc-----
Q 044927          299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-----  373 (467)
Q Consensus       299 ~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~-----  373 (467)
                                  +++|.+.           ..+...++.          .+.+=..-.+-|.|+|+|.+.+.+..     
T Consensus       196 ------------ev~e~~~-----------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr  242 (432)
T PRK06793        196 ------------EVKDFIR-----------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFR  242 (432)
T ss_pred             ------------cHHHHHH-----------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence                        2222221           001110110          01111222567999999999999887     


Q ss_pred             --CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927          374 --KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       374 --~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g  437 (467)
                        .++-++++|+||...|+.  +.+...+.+.. .|.+..+.+|-....+.+-+   .++|.|...+
T Consensus       243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~  304 (432)
T PRK06793        243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIY  304 (432)
T ss_pred             HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEE
Confidence              789999999999999996  44554555543 47888888885555555544   4688886654

>PRK01156 chromosome segregation protein; Provisional

Probab=99.20  E-value=4.2e-11  Score=136.18  Aligned_cols=76  Identities=21%  Similarity=0.304  Sum_probs=66.8

Q ss_pred             CCCCCChhHHHHHHH------HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CC--C-ceEEEEccChhHHhhcC
Q 044927          354 EGENWSVGQRQLFCL------GRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FP--G-STVITVAHRVPTITDSD  423 (467)
Q Consensus       354 ~g~~LSgGq~Qrl~i------ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~--~-~tvi~itH~l~~~~~~d  423 (467)
                      .+..|||||++|++|      ||+++.+|++++|||||++||+.....+.+.+... ..  + .|+|+|||+...+..||
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d  877 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD  877 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence            467899999999975      59999999999999999999999999988888753 22  3 48999999999988899


Q ss_pred             EEEEEe
Q 044927          424 MFMVLS  429 (467)
Q Consensus       424 ~i~vl~  429 (467)
                      +++.+.
T Consensus       878 ~ii~~~  883 (895)
T PRK01156        878 VAYEVK  883 (895)
T ss_pred             eEEEEE
Confidence            999998

>PRK03918 chromosome segregation protein; Provisional

Probab=99.19  E-value=4.1e-11  Score=136.14  Aligned_cols=76  Identities=25%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             CCCCChhHHH------HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEE
Q 044927          355 GENWSVGQRQ------LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMV  427 (467)
Q Consensus       355 g~~LSgGq~Q------rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v  427 (467)
                      ...|||||+|      |++|||+++.+|+++||||||++||+.....+.+.|.... .+.|+|+|||+.+....||++++
T Consensus       786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~  865 (880)
T PRK03918        786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIR  865 (880)
T ss_pred             hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence            3579999999      5666678899999999999999999999999999998754 36799999999988778999999


Q ss_pred             EeC
Q 044927          428 LSY  430 (467)
Q Consensus       428 l~~  430 (467)
                      |+.
T Consensus       866 l~~  868 (880)
T PRK03918        866 VSL  868 (880)
T ss_pred             EEe
Confidence            983

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.19  E-value=1.2e-11  Score=126.75  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcccEEEcCCC
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEP  305 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~  305 (467)
                      .+|+++|+++++||+++|+||||||||||++  .|+.+|++| +|.++|.++...+..++...- +|+|+.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f   87 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF   87 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence            4899999999999999999999999999999  788888888 799999999887655433211 788853

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.14  E-value=6.5e-11  Score=138.12  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=68.9

Q ss_pred             CCCCCCChhHHHHHHHHHHh----cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927          353 DEGENWSVGQRQLFCLGRVL----LKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       353 ~~g~~LSgGq~Qrl~iARal----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl  428 (467)
                      .....|||||+||++|||++    +++|+++||||||++||+.+...+.+.|....++.++|+|||++..+..||+++.+
T Consensus      1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168      1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred             ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence            34568999999999999998    47789999999999999999999999998876678999999999998889998755


Q ss_pred             e
Q 044927          429 S  429 (467)
Q Consensus       429 ~  429 (467)
                      .
T Consensus      1165 ~ 1165 (1179)
T TIGR02168      1165 T 1165 (1179)
T ss_pred             e
Confidence            4

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.13  E-value=4.2e-10  Score=106.43  Aligned_cols=138  Identities=13%  Similarity=0.095  Sum_probs=81.9

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVR  313 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~  313 (467)
                      ..+-+|++|+.++|++++|.||||+||||+++.+....-...     -|..+.   .+  +..++++.   .+|. ....
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-----~G~~vp---a~--~~~i~~~~---~i~~~~~~~   83 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-----MGMDVP---AK--SMRLSLVD---RIFTRIGAR   83 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-----cCCccC---cc--ccEecccc---EEEEecCcc
Confidence            358899999999999999999999999999999876532210     010000   00  01111111   1111 1222


Q ss_pred             HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927          314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD  393 (467)
Q Consensus       314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~  393 (467)
                      |++......-..                                    |-++++-.-..+.+|+++|||||.+|+|+...
T Consensus        84 d~~~~~~StF~~------------------------------------e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg  127 (218)
T cd03286          84 DDIMKGESTFMV------------------------------------ELSETANILRHATPDSLVILDELGRGTSTHDG  127 (218)
T ss_pred             cccccCcchHHH------------------------------------HHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence            333211000011                                    11222222222357999999999999999876


Q ss_pred             HHHHHH-HHHHCC--CceEEEEccChhHHhh
Q 044927          394 AILQRI-IREEFP--GSTVITVAHRVPTITD  421 (467)
Q Consensus       394 ~~i~~~-l~~~~~--~~tvi~itH~l~~~~~  421 (467)
                      ..+... ++.+.+  +.++|++||..+....
T Consensus       128 ~~la~ail~~L~~~~~~~~i~~TH~~el~~~  158 (218)
T cd03286         128 YAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE  158 (218)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence            666665 444333  7899999999988764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.10  E-value=5.6e-10  Score=99.62  Aligned_cols=129  Identities=20%  Similarity=0.129  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHH
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE  329 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~  329 (467)
                      ++.|.||+|+||||+++.+++...+..|.+.+-+.+...   ...+                  ++....          
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~----------   49 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGE----------   49 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhh----------
Confidence            368999999999999999999887766666554432211   1111                  000000          


Q ss_pred             HHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCC----------CHHHHHHHHHH
Q 044927          330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI----------DSATDAILQRI  399 (467)
Q Consensus       330 ~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~L----------D~~~~~~i~~~  399 (467)
                        ...       ..+... ..+.......+.++.++++.+++...+|+++++||+++-+          |....+.+.+.
T Consensus        50 --~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l  119 (165)
T cd01120          50 --SLK-------GALDNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL  119 (165)
T ss_pred             --hhc-------cccccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence              000       000000 0111111223455566788899999999999999999544          44445566555


Q ss_pred             HHHHC-CCceEEEEccChhHH
Q 044927          400 IREEF-PGSTVITVAHRVPTI  419 (467)
Q Consensus       400 l~~~~-~~~tvi~itH~l~~~  419 (467)
                      ..... .+.|+|+++|.....
T Consensus       120 ~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120         120 LERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             HHHHhcCCceEEEEEecCCcc
Confidence            55543 489999999977543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.10  E-value=1.7e-10  Score=109.92  Aligned_cols=64  Identities=23%  Similarity=0.346  Sum_probs=53.0

Q ss_pred             CCCChhHHHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHH
Q 044927          356 ENWSVGQRQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTI  419 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~  419 (467)
                      ..+|.|++|.+.++-++...+   .++++|||-++|.|...+.+.+.+.+..+ +.-+|++||.+..+
T Consensus       235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            356999999999998888776   89999999999999999999999987665 78999999998764

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.09  E-value=1.1e-09  Score=122.67  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=58.4

Q ss_pred             hcCCCCEEEeeCCCCCC-CHHHHHHHHHHHHHH-CCCceEEEEccChhHHh----------hcCEEEEEeCCEEEEecCh
Q 044927          372 LLKRNRILVLDEATASI-DSATDAILQRIIREE-FPGSTVITVAHRVPTIT----------DSDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       372 l~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~----------~~d~i~vl~~G~iv~~g~~  439 (467)
                      +..+|+++++|||+.+| |+...+.+.+.++.. +.+.+++++||+++.+.          .||+.++|.+|++.+.|+.
T Consensus       649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            35799999999999999 689999999999875 45889999999998763          5999999999998776643

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.06  E-value=3e-10  Score=132.65  Aligned_cols=75  Identities=24%  Similarity=0.325  Sum_probs=68.9

Q ss_pred             CCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927          356 ENWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      ..||||||++++||++++    .+||++|||||+++||+.....+.+.|.+..++.++|+|||+...+..||+++.+..
T Consensus      1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169      1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred             hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence            479999999999999998    478999999999999999999999999988777889999999998888999987764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.04  E-value=4.2e-10  Score=105.16  Aligned_cols=118  Identities=23%  Similarity=0.256  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHH
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW  328 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~  328 (467)
                      .+.|+||+||||||+++.+++.+++. .|.|.....++. +..   ....+++.|..                       
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~~-----------------------   55 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQRE-----------------------   55 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeecc-----------------------
Confidence            68899999999999999999888754 567665443321 100   00111111100                       


Q ss_pred             HHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCce
Q 044927          329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGST  408 (467)
Q Consensus       329 ~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t  408 (467)
                                            +|.....++      =+++++|..+|+++++|||.   |+++-..   .++....|.+
T Consensus        56 ----------------------vg~~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~---~l~~a~~G~~  101 (198)
T cd01131          56 ----------------------VGLDTLSFE------NALKAALRQDPDVILVGEMR---DLETIRL---ALTAAETGHL  101 (198)
T ss_pred             ----------------------cCCCccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHH---HHHHHHcCCE
Confidence                                  000001111      14788999999999999996   6654333   3434445889


Q ss_pred             EEEEccChhHHhhcCEEEEE
Q 044927          409 VITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       409 vi~itH~l~~~~~~d~i~vl  428 (467)
                      ++.++|..+.....||++.+
T Consensus       102 v~~t~Ha~~~~~~~~Rl~~l  121 (198)
T cd01131         102 VMSTLHTNSAAKTIDRIIDV  121 (198)
T ss_pred             EEEEecCCcHHHHHhHHHhh
Confidence            99999998876666776555

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.01  E-value=7.8e-10  Score=127.00  Aligned_cols=78  Identities=22%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             CCCCCCChhHHHHHHHHHHhcC--------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-c
Q 044927          353 DEGENWSVGQRQLFCLGRVLLK--------RNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-S  422 (467)
Q Consensus       353 ~~g~~LSgGq~Qrl~iARal~~--------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~  422 (467)
                      ....+|||||+|+++|||||..        +|++|+|||||++||+.+...+++.|..+. .|+||++|||....... .
T Consensus       945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246        945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence            3457899999999999999995        899999999999999999999999998864 58999999997766665 5


Q ss_pred             CEEEEEeC
Q 044927          423 DMFMVLSY  430 (467)
Q Consensus       423 d~i~vl~~  430 (467)
                      .+|.|-..
T Consensus      1025 ~qi~V~k~ 1032 (1047)
T PRK10246       1025 VQIKVKKI 1032 (1047)
T ss_pred             ceEEEEEC
Confidence            67777654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.97  E-value=2e-08  Score=86.42  Aligned_cols=117  Identities=32%  Similarity=0.360  Sum_probs=79.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHH
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN  325 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~  325 (467)
                      ++..+.|+||+|+||||+++.+++.+.... +-+.++.............                              
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence            467899999999999999999999887654 4455544322211111000                              


Q ss_pred             HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH-------
Q 044927          326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR-------  398 (467)
Q Consensus       326 ~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~-------  398 (467)
                                            ............+++..+..+++|-..+|+++++||+..-.+.........       
T Consensus        51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~  108 (148)
T smart00382       51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL  108 (148)
T ss_pred             ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence                                  011112234567888888999999988899999999999999887765543       


Q ss_pred             HHHHHCCCceEEEEccC
Q 044927          399 IIREEFPGSTVITVAHR  415 (467)
Q Consensus       399 ~l~~~~~~~tvi~itH~  415 (467)
                      .......+..+|.++|.
T Consensus       109 ~~~~~~~~~~~i~~~~~  125 (148)
T smart00382      109 LLLKSEKNLTVILTTND  125 (148)
T ss_pred             HHHHhcCCCEEEEEeCC
Confidence            22223456788888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.94  E-value=3.9e-09  Score=94.97  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=62.7

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      ...|-||-=.--+.|.+ ++.-|+|||||-|+|.|.-+-.+...|+++. .|.-+|+.||.+=.+.. --+|+-++.+.+
T Consensus       128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~  206 (233)
T COG3910         128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI  206 (233)
T ss_pred             hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence            34599998766667766 4568999999999999999999999998864 58899999999877665 568888887764

>PRK02224 chromosome segregation protein; Provisional

Probab=98.94  E-value=1.6e-09  Score=123.08  Aligned_cols=76  Identities=24%  Similarity=0.307  Sum_probs=66.5

Q ss_pred             CCCChhHHH------HHHHHHHhcCC-----C-CEEEeeCCCCCCCHHHHHHHHHHHHHHCC-C-ceEEEEccChhHHhh
Q 044927          356 ENWSVGQRQ------LFCLGRVLLKR-----N-RILVLDEATASIDSATDAILQRIIREEFP-G-STVITVAHRVPTITD  421 (467)
Q Consensus       356 ~~LSgGq~Q------rl~iARal~~~-----p-~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~~~~  421 (467)
                      ..|||||||      |+++|+++..+     | +++||||||++||+.....+.+.|..... + .++|+|||+...+..
T Consensus       780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~  859 (880)
T PRK02224        780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA  859 (880)
T ss_pred             hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence            489999999      99999999864     2 67999999999999999999998887643 4 489999999999988


Q ss_pred             cCEEEEEeCC
Q 044927          422 SDMFMVLSYG  431 (467)
Q Consensus       422 ~d~i~vl~~G  431 (467)
                      ||+++++...
T Consensus       860 ad~~~~~~~~  869 (880)
T PRK02224        860 ADDLVRVEKD  869 (880)
T ss_pred             cCeeEEeecC
Confidence            9999999754

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.93  E-value=1.6e-08  Score=97.00  Aligned_cols=74  Identities=18%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             CCChhHHHHHHHHHHhcC--CCCEEEeeCCCCCCC---HHHHHHHHHHHHHH-CCCceEEEEccChhH-------Hhh-c
Q 044927          357 NWSVGQRQLFCLGRVLLK--RNRILVLDEATASID---SATDAILQRIIREE-FPGSTVITVAHRVPT-------ITD-S  422 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~--~p~iliLDEpts~LD---~~~~~~i~~~l~~~-~~~~tvi~itH~l~~-------~~~-~  422 (467)
                      ..|.++++.+..++..+.  +|+++++||||+.+|   ......+.+.++.. ..++|+++++|....       +.. +
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~  179 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC  179 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence            346788999999999997  999999999996544   44334444445443 357899999997653       233 6


Q ss_pred             CEEEEEeC
Q 044927          423 DMFMVLSY  430 (467)
Q Consensus       423 d~i~vl~~  430 (467)
                      |-++.|+.
T Consensus       180 DgvI~L~~  187 (234)
T PRK06067        180 DVYLKLRA  187 (234)
T ss_pred             EEEEEEEe
Confidence            77777763

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.91  E-value=3.7e-09  Score=99.07  Aligned_cols=66  Identities=27%  Similarity=0.426  Sum_probs=54.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHH
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR  313 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~  313 (467)
                      ++|++++|+||||||||||++.|++.++            |..|+  ++|.++..++..++++.   +.|+.+++.+++.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~   77 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF   77 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence            5899999999999999999999999985            77888  58888877777777764   3566777778887


Q ss_pred             Hhc
Q 044927          314 TNL  316 (467)
Q Consensus       314 enl  316 (467)
                      +|.
T Consensus        78 ~~~   80 (205)
T PRK00300         78 GNY   80 (205)
T ss_pred             Ccc
Confidence            774

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.89  E-value=2.9e-09  Score=109.74  Aligned_cols=86  Identities=19%  Similarity=0.289  Sum_probs=70.6

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc---CEeCCCCCHHH-
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID---GLDICSMGLKD-  293 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~---g~~i~~~~~~~-  293 (467)
                      .+.++.++++..|..+ ..+++.++ ++.+||+++|+||||||||||++.|+|+.+|+.|.|.+.   |.++.++..+. 
T Consensus       137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l  214 (450)
T PRK06002        137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL  214 (450)
T ss_pred             CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence            4568999999999754 35888885 999999999999999999999999999999999999885   56665544332 


Q ss_pred             ---HhcccEEEcCCC
Q 044927          294 ---LRTKLSIIPQEP  305 (467)
Q Consensus       294 ---~r~~i~~v~Q~~  305 (467)
                         +++.+++|+|..
T Consensus       215 ~~~r~rtI~vV~qsd  229 (450)
T PRK06002        215 ADNLKKAVAVVATSD  229 (450)
T ss_pred             HHhhCCeEEEEEcCC
Confidence               235799999954

>TIGR00767 rho transcription termination factor Rho

Probab=98.84  E-value=1.3e-08  Score=103.16  Aligned_cols=82  Identities=20%  Similarity=0.288  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceec-----------ceeEEEeCCcEEEE
Q 044927          185 NIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLK-----------GITCTFKEGTRVGV  253 (467)
Q Consensus       185 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~-----------~isl~i~~Ge~~~i  253 (467)
                      ...+.+|++++++.++...     . ++.  ...+.++|+||+|.|++.. .+|+           |+++.|.+|++++|
T Consensus       103 ~~~~~ER~~~Ll~v~~vn~-----~-~~e--~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~I  173 (415)
T TIGR00767       103 SPKEGERYFALLKVESVNG-----D-DPE--KAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLI  173 (415)
T ss_pred             ccccHhHHHHHhCCCccCC-----C-Ccc--ccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEE
Confidence            3467899999998754421     1 111  1245799999999998654 6897           99999999999999


Q ss_pred             EcCCCCcHHHHHHHHhcCCCCC
Q 044927          254 VGRTGSGKTTLISALFRLVEPE  275 (467)
Q Consensus       254 vG~sGsGKSTll~~l~gl~~p~  275 (467)
                      +||+|||||||++.|.+.+...
T Consensus       174 vG~~g~GKTtL~~~i~~~I~~n  195 (415)
T TIGR00767       174 VAPPKAGKTVLLQKIAQAITRN  195 (415)
T ss_pred             ECCCCCChhHHHHHHHHhhccc
Confidence            9999999999999999987643

Members of this family differ in the specificity of RNA binding.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.78  E-value=8.2e-10  Score=116.90  Aligned_cols=156  Identities=16%  Similarity=0.155  Sum_probs=97.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHH--hcCCCCCccEEEEcCEeCCCCCHHHHhc---ccEEEcCCCccccccHHHhcCc
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISAL--FRLVEPENGRILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l--~gl~~p~~G~i~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      -+++|..+.|.||+|||||||..-.  .|..++.+.-+++...    -+++++++   .+|+-.++..-     .+++..
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~   87 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI   87 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence            4789999999999999999999876  3555555666777653    23444433   45555443210     011111


Q ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH--HHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG--RVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA--Ral~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ............++..++.+.++.++           ..+|+|++||+.|+  .++..+|+..          +..++.+
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l  146 (484)
T TIGR02655        88 LDASPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI  146 (484)
T ss_pred             EecCchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence            00011111112334455666665554           56799999999999  6666655433          4556677


Q ss_pred             HHHHHHH-CCCceEEEEccChhH--------H-hh-cCEEEEEe
Q 044927          397 QRIIREE-FPGSTVITVAHRVPT--------I-TD-SDMFMVLS  429 (467)
Q Consensus       397 ~~~l~~~-~~~~tvi~itH~l~~--------~-~~-~d~i~vl~  429 (467)
                      .+.++.+ ..|+|+|+++|+.+.        + +. ||.|+.|+
T Consensus       147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            7777664 358999999998753        2 33 89999987

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.77  E-value=5.4e-08  Score=98.82  Aligned_cols=171  Identities=22%  Similarity=0.246  Sum_probs=116.0

Q ss_pred             EEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCC
Q 044927          226 LKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE  304 (467)
Q Consensus       226 vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~  304 (467)
                      |++..++..  .+.+  +-|++| ++.|+|.+=-|||||+++|. |.|+.--|    ||.+              ||--+
T Consensus       227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE--------------~VVT~  283 (448)
T PF09818_consen  227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE--------------FVVTD  283 (448)
T ss_pred             EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce--------------EEEEC
Confidence            667766543  3454  478999 99999999999999999997 78876555    5532              11111


Q ss_pred             CccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927          305 PTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA  384 (467)
Q Consensus       305 ~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp  384 (467)
                      +.-..  |        .+   |--+..+.+++..||..||.|.||.- ---.+=||-.-|=-.|..|+=..+++||+||=
T Consensus       284 ~~avk--i--------rA---EDGR~V~~vDISpFI~~LP~g~dT~~-FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDED  349 (448)
T PF09818_consen  284 PDAVK--I--------RA---EDGRSVEGVDISPFINNLPGGKDTTC-FSTENASGSTSQAANIMEALEAGARLLLIDED  349 (448)
T ss_pred             CCceE--E--------Ee---cCCceEeCccchHHHhhCCCCCCCCc-ccccCCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence            11000  0        00   00123345678899999999999873 22245699999999999999999999999999


Q ss_pred             CCCC-----CHHHHHHH----------HHHHHHH--CCCceEEEEccCh-hHHhhcCEEEEEeCCEE
Q 044927          385 TASI-----DSATDAIL----------QRIIREE--FPGSTVITVAHRV-PTITDSDMFMVLSYGEL  433 (467)
Q Consensus       385 ts~L-----D~~~~~~i----------~~~l~~~--~~~~tvi~itH~l-~~~~~~d~i~vl~~G~i  433 (467)
                      ||+-     |...+..+          .+.++.+  ..|.++|+|+=-. ..+..||+|++|++=+-
T Consensus       350 tsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~  416 (448)
T PF09818_consen  350 TSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP  416 (448)
T ss_pred             ccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence            9987     55445544          2223333  1365555555444 46777999999998653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.71  E-value=9.6e-09  Score=107.24  Aligned_cols=61  Identities=23%  Similarity=0.357  Sum_probs=47.4

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      +++.++.+++|+++++|||||+||||++..|++.+.+..|.                 ++++++++|+  |+.+..|++.
T Consensus       246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr  306 (484)
T PRK06995        246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLR  306 (484)
T ss_pred             ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHH
Confidence            34455556789999999999999999999999988766663                 1578888887  5556677774

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.68  E-value=1.3e-08  Score=104.85  Aligned_cols=81  Identities=19%  Similarity=0.287  Sum_probs=61.8

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc---EEEEcCEeCCCCCHHHH------hcccEEEcCCCc
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG---RILIDGLDICSMGLKDL------RTKLSIIPQEPT  306 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G---~i~i~g~~i~~~~~~~~------r~~i~~v~Q~~~  306 (467)
                      .+++++ |++.+|++++|+|+||||||||+++|+|+++|+.+   .|-.+|.++.++..+.+      |..+++++|+..
T Consensus       144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s  222 (434)
T PRK07196        144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES  222 (434)
T ss_pred             eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence            489999 99999999999999999999999999999998863   34444545544332322      456899999987


Q ss_pred             ccc-ccHHHhcC
Q 044927          307 LFR-GSVRTNLD  317 (467)
Q Consensus       307 lf~-~tv~enl~  317 (467)
                      .+. .++.++..
T Consensus       223 ~~~rl~a~e~a~  234 (434)
T PRK07196        223 PLMRIKATELCH  234 (434)
T ss_pred             hhhhHHHHHHHH
Confidence            664 36666653

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.67  E-value=4.9e-07  Score=101.92  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=47.5

Q ss_pred             HHHHhcCCCCEEEeeCCCCCC-CHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh
Q 044927          368 LGRVLLKRNRILVLDEATASI-DSATDAILQRIIREE-FPGSTVITVAHRVPTITD  421 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~  421 (467)
                      |+|++..+|+++++|||+.+| |+...+.+.+.++.. +.+.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            688899999999999999999 788899999988875 358899999999997754

>TIGR00611 recf recF protein

Probab=98.67  E-value=2.9e-08  Score=101.21  Aligned_cols=62  Identities=23%  Similarity=0.327  Sum_probs=56.6

Q ss_pred             CCChhHHHHHHHHHHhcC---------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh
Q 044927          357 NWSVGQRQLFCLGRVLLK---------RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT  420 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~---------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~  420 (467)
                      .+|.||++++.||.+|+.         +|+|||||||+|+||+.....+.+.|.+.  +.+++++||+++.+.
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~  345 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK  345 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence            579999999999999999         99999999999999999999999999754  679999999987654

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.63  E-value=3.1e-07  Score=95.39  Aligned_cols=176  Identities=18%  Similarity=0.181  Sum_probs=105.5

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HH-----HhcccEEEcCCCcc
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL---KD-----LRTKLSIIPQEPTL  307 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~---~~-----~r~~i~~v~Q~~~l  307 (467)
                      .+++++ +++.+|++++|+|+||+|||||++.|+|..+|+.|.+...|..-.++..   +.     +++.+.++.+    
T Consensus       152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~----  226 (440)
T TIGR01026       152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT----  226 (440)
T ss_pred             eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC----
Confidence            489999 9999999999999999999999999999999998887776654333210   00     0111111111    


Q ss_pred             ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCCh-hHHHHHHHHHHhcCCCCEEEeeCC--
Q 044927          308 FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSV-GQRQLFCLGRVLLKRNRILVLDEA--  384 (467)
Q Consensus       308 f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSg-Gq~Qrl~iARal~~~p~iliLDEp--  384 (467)
                                 ..+..-++...+.-.+-..++...  .|.|-.+=-  .+++- =|.|| .++         +.+.||  
T Consensus       227 -----------~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~--DslTr~A~A~R-Eis---------l~~ge~P~  281 (440)
T TIGR01026       227 -----------SDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLM--DSVTRFAMAQR-EIG---------LAAGEPPA  281 (440)
T ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEE--eChHHHHHHHH-HHH---------HhcCCCCc
Confidence                       011112222222222223233332  244432210  01111 11111 111         123453  


Q ss_pred             CCCCCHHHHHHHHHHHHHHC-CCc-------eEEEEccChhHHhhcCEEEEEeCCEEEEecChhhH
Q 044927          385 TASIDSATDAILQRIIREEF-PGS-------TVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       385 ts~LD~~~~~~i~~~l~~~~-~~~-------tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      +.|.||.....+.+.+.+.. .++       ||++-+|++. -.-+|++.-+.+|+|+.+....+.
T Consensus       282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~~  346 (440)
T TIGR01026       282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQR  346 (440)
T ss_pred             ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhhC
Confidence            56899999888888887754 356       8888999983 224899999999999988766544

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.63  E-value=2.5e-08  Score=92.23  Aligned_cols=66  Identities=21%  Similarity=0.298  Sum_probs=50.2

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP  305 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~  305 (467)
                      ..+=+.+.+++|+.++|+|||||||||++++|+|+++|+.|.|.+.+..-...+   .+..++++.|.+
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~   79 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPG   79 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecC
Confidence            345566778999999999999999999999999999999999999774322221   133456665543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.61  E-value=7.5e-08  Score=92.62  Aligned_cols=44  Identities=23%  Similarity=0.380  Sum_probs=35.3

Q ss_pred             hcCCCCEEEeeCCCCC------CCHHHHHHHHHHHHHHC--CCceEEEEccCh
Q 044927          372 LLKRNRILVLDEATAS------IDSATDAILQRIIREEF--PGSTVITVAHRV  416 (467)
Q Consensus       372 l~~~p~iliLDEpts~------LD~~~~~~i~~~l~~~~--~~~tvi~itH~l  416 (467)
                      ...+|+++|+| |+++      .|+.....+.+.+.+..  .++|+|+++|..
T Consensus       108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            35799999999 7754      68888888888887743  389999999976

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.57  E-value=1.5e-07  Score=95.37  Aligned_cols=119  Identities=21%  Similarity=0.216  Sum_probs=73.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS  323 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~  323 (467)
                      ..++..+.|.||+||||||+++.+.+.+++ .+|+|..-..++.-.    .....+.+.|.                   
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~-------------------  175 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR-------------------  175 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence            357889999999999999999999997763 467766544322100    00000011110                   


Q ss_pred             HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927          324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE  403 (467)
Q Consensus       324 ~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~  403 (467)
                                                .+|.....      -.-++++||-.+|+++++||+.   |+++.....+   ..
T Consensus       176 --------------------------evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa  217 (343)
T TIGR01420       176 --------------------------EVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALT---AA  217 (343)
T ss_pred             --------------------------ccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HH
Confidence                                      00100000      1234677888999999999997   8887765443   33


Q ss_pred             CCCceEEEEccChhHHhhcCE
Q 044927          404 FPGSTVITVAHRVPTITDSDM  424 (467)
Q Consensus       404 ~~~~tvi~itH~l~~~~~~d~  424 (467)
                      ..|.+++.+.|..+.....+|
T Consensus       218 ~tGh~v~~T~Ha~~~~~~~~R  238 (343)
T TIGR01420       218 ETGHLVFGTLHTNSAAQTIER  238 (343)
T ss_pred             HcCCcEEEEEcCCCHHHHHHH
Confidence            458889999998655443333

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.57  E-value=8.2e-08  Score=97.47  Aligned_cols=87  Identities=28%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCC--Cc-cEEEEcCEeCCCCCHHHHhcccEEEcCCCc-----cccccHHHhcC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEP--EN-GRILIDGLDICSMGLKDLRTKLSIIPQEPT-----LFRGSVRTNLD  317 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----lf~~tv~enl~  317 (467)
                      ++|..++|+|||||||||++++|++.+.+  .+ +.|.....++ ++..+.+++..++++|...     -|...+++++.
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR  210 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR  210 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence            48999999999999999999999999843  33 4565544444 4666666666788888642     46677888775


Q ss_pred             cCC------CCCHH-HHHHHHHH
Q 044927          318 PLG------MYSDN-EIWEAMEK  333 (467)
Q Consensus       318 ~~~------~~~~~-~~~~~~~~  333 (467)
                      ..+      +..+. .+..+++.
T Consensus       211 ~~Pd~i~vGEiRd~et~~~al~a  233 (358)
T TIGR02524       211 RKPHAILVGEARDAETISAALEA  233 (358)
T ss_pred             cCCCEEeeeeeCCHHHHHHHHHH
Confidence            332      22333 34456665

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK14079 recF recombination protein F; Provisional

Probab=98.57  E-value=1.3e-07  Score=96.01  Aligned_cols=77  Identities=14%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             CCChhHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEE
Q 044927          357 NWSVGQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV  427 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v  427 (467)
                      -+|+||++++++|+.|+         .+|++++||||++.||+.....+.+.+....  .++|..|+   .-..||+++.
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~~  337 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTLR  337 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEEE
Confidence            57999999999999998         8999999999999999999999988886532  34444443   2345899999


Q ss_pred             EeCCEEEEecC
Q 044927          428 LSYGELVEYDL  438 (467)
Q Consensus       428 l~~G~iv~~g~  438 (467)
                      +++|++.-+.+
T Consensus       338 ~~~~~~~~~~~  348 (349)
T PRK14079        338 IEAGVFTPEAP  348 (349)
T ss_pred             EeccEecCCCC
Confidence            99998765444

>PRK01889 GTPase RsgA; Reviewed

Probab=98.54  E-value=5.8e-08  Score=98.76  Aligned_cols=79  Identities=22%  Similarity=0.265  Sum_probs=64.7

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL  316 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl  316 (467)
                      -++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-..   ...++++.+++|++.+++.+...|+
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~  260 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL  260 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence            3566777788999999999999999999999999999999999998753221   2235679999999999987777666


Q ss_pred             Cc
Q 044927          317 DP  318 (467)
Q Consensus       317 ~~  318 (467)
                      .+
T Consensus       261 ~l  262 (356)
T PRK01889        261 QL  262 (356)
T ss_pred             cc
Confidence            54

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.54  E-value=8.5e-09  Score=112.63  Aligned_cols=28  Identities=36%  Similarity=0.488  Sum_probs=23.6

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++++|  +.|+||+|+||||+.+.+++...
T Consensus       183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~  210 (644)
T PRK10733        183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAK  210 (644)
T ss_pred             CCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence            45566  89999999999999999988553

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.53  E-value=4.7e-08  Score=91.15  Aligned_cols=111  Identities=17%  Similarity=0.212  Sum_probs=59.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHH
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI  327 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~  327 (467)
                      ++||+||||||||||.+.|.+++  ..|.+.+-+.|--.  .+....+...+...+              .....+.+.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~   64 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERKNNNYD--------------HPDAFDFDLL   64 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhccCCCC--------------CCCcccHHHH
Confidence            47999999999999999999988  34444444333110  000000000000000              0011122222


Q ss_pred             HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927          328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS  390 (467)
Q Consensus       328 ~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~  390 (467)
                      .+.+..         +-.+  ..+.....++|.|++++..+   .+.+|+++|+|+|+...++
T Consensus        65 ~~~l~~---------l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          65 ISHLQD---------LKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             HHHHHH---------HHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence            222222         1111  11222335678888776554   5688999999999999886

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.50  E-value=1.2e-07  Score=87.73  Aligned_cols=55  Identities=24%  Similarity=0.332  Sum_probs=46.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP  305 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~  305 (467)
                      |++++|+||||||||||++.|++...|   .+.+++..+........+..+++++|+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF   56 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence            789999999999999999999999876   5888888777655555667788888875

>PRK08149 ATP synthase SpaL; Validated

Probab=98.48  E-value=1.4e-07  Score=97.28  Aligned_cols=68  Identities=24%  Similarity=0.336  Sum_probs=58.1

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---cEEEEcCEeCCCCCHHHHh----cccEEEcCC
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN---GRILIDGLDICSMGLKDLR----TKLSIIPQE  304 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~---G~i~i~g~~i~~~~~~~~r----~~i~~v~Q~  304 (467)
                      .+++++ +++.+||+++|+|+||+|||||++.|++..+++.   |.|..+|.++.++..+.++    +++++|+..
T Consensus       140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~  214 (428)
T PRK08149        140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT  214 (428)
T ss_pred             EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence            489999 9999999999999999999999999999999987   9999999988776554443    566777553

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.45  E-value=3.1e-07  Score=108.04  Aligned_cols=62  Identities=24%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             CCCCCChhHHHHHH----HHHH--------hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChh
Q 044927          354 EGENWSVGQRQLFC----LGRV--------LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVP  417 (467)
Q Consensus       354 ~g~~LSgGq~Qrl~----iARa--------l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~  417 (467)
                      ....|||||||+++    +|++        +..+|++++|||||+++|+.+...+++.+.++  +.++|++||++-
T Consensus      1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680      1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence            35789999999996    5755        55899999999999999999999999999887  789999999874

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.41  E-value=7.6e-07  Score=101.50  Aligned_cols=78  Identities=24%  Similarity=0.282  Sum_probs=67.5

Q ss_pred             CCCCCChhHHHHHHHHHHh------cCC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhhcCE
Q 044927          354 EGENWSVGQRQLFCLGRVL------LKR--NRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITDSDM  424 (467)
Q Consensus       354 ~g~~LSgGq~Qrl~iARal------~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~d~  424 (467)
                      ...+|||||+=.++||-+|      ..+  -++++|||||.+||+++...+.+.|..... +.+|++|||+-+....+|.
T Consensus       812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~  891 (908)
T COG0419         812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV  891 (908)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence            4578999999877776665      355  699999999999999999999999998654 6999999999999999999


Q ss_pred             EEEEeCC
Q 044927          425 FMVLSYG  431 (467)
Q Consensus       425 i~vl~~G  431 (467)
                      ++.++..
T Consensus       892 ~i~V~k~  898 (908)
T COG0419         892 RIRVKKD  898 (908)
T ss_pred             EEEEEec
Confidence            9988754

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.38  E-value=2e-06  Score=96.77  Aligned_cols=66  Identities=14%  Similarity=0.163  Sum_probs=45.4

Q ss_pred             CChhHHHHHHHHHHhcC--CCCEEEeeCC---CCCCCHHH-HHHHHHHHHHHCCCceEEEEccChhHHhhcCE
Q 044927          358 WSVGQRQLFCLGRVLLK--RNRILVLDEA---TASIDSAT-DAILQRIIREEFPGSTVITVAHRVPTITDSDM  424 (467)
Q Consensus       358 LSgGq~Qrl~iARal~~--~p~iliLDEp---ts~LD~~~-~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~  424 (467)
                      +|--+.....++++|-.  ++.++|||||   |+.+|... ...+.+.+.+. .+++++++||..+....+++
T Consensus       667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~  738 (854)
T PRK05399        667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK  738 (854)
T ss_pred             cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence            45555666667776654  8999999999   99999654 33455555442 25899999999665554543

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.37  E-value=8.4e-06  Score=91.76  Aligned_cols=49  Identities=24%  Similarity=0.192  Sum_probs=41.5

Q ss_pred             HhcCCCCEEEeeCCCCCCC-HHHHHHHHHHHHHHC-CCceEEEEccChhHH
Q 044927          371 VLLKRNRILVLDEATASID-SATDAILQRIIREEF-PGSTVITVAHRVPTI  419 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~  419 (467)
                      .+..+|.++++|||...|| +...+.+.+.++..+ .+..++++||.++.+
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~  688 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA  688 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            4567899999999999999 888888888888753 478999999998764

>PLN03210 Resistant to P

Probab=98.36  E-value=1.7e-06  Score=101.12  Aligned_cols=43  Identities=35%  Similarity=0.495  Sum_probs=36.4

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEEcC
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALFR-LVEPENGRILIDG  283 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g-l~~p~~G~i~i~g  283 (467)
                      +++..+.+++++|+|++|+|||||++.+.+ +....+|.+++++
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~  243 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR  243 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence            567778899999999999999999999954 4455689998876

syringae 6; Provisional

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.33  E-value=4.5e-07  Score=83.10  Aligned_cols=53  Identities=26%  Similarity=0.372  Sum_probs=40.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc-ccEEEcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KLSIIPQEP  305 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~  305 (467)
                      +||+++++|+|||||||+++.|++++.|    +.++|.++...  ...|+ ..++.+|+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~   55 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE   55 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence            6999999999999999999999999887    58899877432  22332 345556654

>TIGR00235 udk uridine kinase

Probab=98.32  E-value=2.9e-07  Score=86.54  Aligned_cols=29  Identities=31%  Similarity=0.597  Sum_probs=27.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      ++|++++|+||||||||||++.|.+++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            67999999999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.32  E-value=1e-06  Score=80.69  Aligned_cols=62  Identities=23%  Similarity=0.314  Sum_probs=43.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE-----------cCEeCCCCCHHHH-----hcccEEEcCCCccccc
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILI-----------DGLDICSMGLKDL-----RTKLSIIPQEPTLFRG  310 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~lf~~  310 (467)
                      |++++|+|||||||||+++.|++.+.+. |.+.+           +|.+....+..++     .+.++.++|.+.++.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   78 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG   78 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence            6789999999999999999999987654 55544           5555554544443     2347777776544443

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PLN02796 D-glycerate 3-kinase

Probab=98.29  E-value=2.8e-07  Score=92.05  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=50.5

Q ss_pred             ceecceeEEE---eCCcE-----EEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhc
Q 044927          236 LVLKGITCTF---KEGTR-----VGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       236 ~~L~~isl~i---~~Ge~-----~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~  296 (467)
                      .+++++++++   ++|+.     +||+|++|||||||++.|.+++++.   .|.|.+||..+...+...+++
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~  151 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE  151 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence            4788888887   67777     9999999999999999999999875   588999998876655555554

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=98.28  E-value=4.6e-06  Score=83.45  Aligned_cols=159  Identities=18%  Similarity=0.147  Sum_probs=104.4

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCC
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM  321 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~  321 (467)
                      +-|++| ++.|+|+|=-|||||+.+|. |-++.--|    ||.+.             +|.. ..+-... .+|..    
T Consensus       238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE~-------------vVTd-~~lakae-ae~gr----  293 (554)
T COG3044         238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRER-------------VVTD-VKLAKAE-AEEGR----  293 (554)
T ss_pred             cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCceE-------------EEeh-hhhhhhh-cccce----
Confidence            578999 99999999999999999997 44433222    33210             0110 0000000 01111    


Q ss_pred             CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH--------
Q 044927          322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD--------  393 (467)
Q Consensus       322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~--------  393 (467)
                              ...-.++..|++.||.|-+|.-.-.| .=||-+.|--.|=||+=...++|++||=+|+......        
T Consensus       294 --------~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~e  364 (554)
T COG3044         294 --------CVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESE  364 (554)
T ss_pred             --------eeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhc
Confidence                    11223467799999977788754433 4599999999999999999999999999999843221        


Q ss_pred             --H---HHHHHHHHHCC-CceEEEEccChhH-HhhcCEEEEEeCCEEE
Q 044927          394 --A---ILQRIIREEFP-GSTVITVAHRVPT-ITDSDMFMVLSYGELV  434 (467)
Q Consensus       394 --~---~i~~~l~~~~~-~~tvi~itH~l~~-~~~~d~i~vl~~G~iv  434 (467)
                        +   .+.+.+.+... +.++|.+|--+.. ...+||+++|++-+-.
T Consensus       365 G~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk  412 (554)
T COG3044         365 GERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK  412 (554)
T ss_pred             CcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence              1   22333334433 3788888887765 4569999999987644

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.27  E-value=2.5e-06  Score=92.84  Aligned_cols=110  Identities=16%  Similarity=0.238  Sum_probs=67.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------EEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENG--------RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G--------~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      ..+.+.|+||+|+||||+++++.++..+..|        -+.++|.++. ++...+.        .+ +|. .+.++.  
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~--------~~-llg-~~~~~~--  240 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT--------NP-LLG-SVHDPI--  240 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh--------HH-hcC-CccHHH--
Confidence            3467999999999999999999998865444        4778876542 2222211        11 111 011100  


Q ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHH
Q 044927          319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR  398 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~  398 (467)
                           .....+.++..++.+....           ....+|||                +|+||| +..||+..+..+.+
T Consensus       241 -----~~~a~~~l~~~gl~~~~~g-----------~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~  287 (615)
T TIGR02903       241 -----YQGARRDLAETGVPEPKTG-----------LVTDAHGG----------------VLFIDE-IGELDPLLQNKLLK  287 (615)
T ss_pred             -----HHHHHHHHHHcCCCchhcC-----------chhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence                 1112223344444332222           12456777                999999 79999999999999


Q ss_pred             HHHH
Q 044927          399 IIRE  402 (467)
Q Consensus       399 ~l~~  402 (467)
                      .+++
T Consensus       288 ~Le~  291 (615)
T TIGR02903       288 VLED  291 (615)
T ss_pred             HHhh
Confidence            9875

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.26  E-value=1e-06  Score=91.02  Aligned_cols=65  Identities=20%  Similarity=0.344  Sum_probs=56.7

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD  285 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~  285 (467)
                      ..++.++++..+..+ ..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+.+.|..
T Consensus       128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            357788888888544 3489999 9999999999999999999999999999999999988877754

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.26  E-value=1.7e-06  Score=82.50  Aligned_cols=57  Identities=16%  Similarity=0.212  Sum_probs=38.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHH---hcccEEEcCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQE  304 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~---r~~i~~v~Q~  304 (467)
                      -+++|+.+.|.||+|||||||...++ ....+.++.+++...    .+.+++   .+.+++.+|+
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e----~~~~~i~~~~~~~g~~~~~   76 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE----ESRESIIRQAAQFGMDFEK   76 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHhCCCHHH
Confidence            58999999999999999999988654 233455566777652    223332   3346666654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.25  E-value=1.7e-06  Score=80.89  Aligned_cols=57  Identities=35%  Similarity=0.473  Sum_probs=44.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcc
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL  307 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l  307 (467)
                      +++|+||+|||||||++.+.+.+++..| +.+...+.......++....++++|+..+
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~   59 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL   59 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence            6899999999999999999999888655 55555566555555666677888988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.24  E-value=5.2e-06  Score=71.84  Aligned_cols=54  Identities=15%  Similarity=0.137  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC------CCceEEEEccChh
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF------PGSTVITVAHRVP  417 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~  417 (467)
                      .+.....++...++.++++||.-.. ++.....+.+.+....      .+.++|++++...
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            4556667777889999999998765 5556667777777653      4678888888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=98.22  E-value=7.7e-06  Score=78.17  Aligned_cols=41  Identities=32%  Similarity=0.413  Sum_probs=33.5

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcC-CCC------CccEEEEcCEe
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRL-VEP------ENGRILIDGLD  285 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl-~~p------~~G~i~i~g~~  285 (467)
                      +++|+++.|.||+|||||||+..++.. ..|      ..+.+++++.+
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            789999999999999999999988732 334      37888888764

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.22  E-value=1e-06  Score=88.19  Aligned_cols=60  Identities=27%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------CHHHHhcccEEEcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------GLKDLRTKLSIIPQEP  305 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~------~~~~~r~~i~~v~Q~~  305 (467)
                      ++|++++++|||||||||++..|++.+.+..|+|.+.+.|....      .....+..+.+++|..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~  177 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE  177 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC
Confidence            56899999999999999999999999999889999988876432      2223355688888753

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.21  E-value=1.2e-06  Score=92.27  Aligned_cols=63  Identities=22%  Similarity=0.254  Sum_probs=56.3

Q ss_pred             EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927          223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC  287 (467)
Q Consensus       223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~  287 (467)
                      ++|++..|+.  ..+++++++.+..|+.++++||||||||||++.|.|+++|.+|++.+++..+.
T Consensus       187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~  249 (506)
T PRK09862        187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL  249 (506)
T ss_pred             ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence            4588888853  34899999999999999999999999999999999999999999999886653

>PTZ00035 Rad51 protein; Provisional

Probab=98.20  E-value=5.2e-06  Score=83.79  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=54.2

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-C-----CccEE-EEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVE-P-----ENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL  316 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p-----~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl  316 (467)
                      -+++|+++.|.||+|||||||+..++.... |     ..|++ ++|+...  ++++.    +..++|.+.+...++.+|+
T Consensus       114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI  187 (337)
T PTZ00035        114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI  187 (337)
T ss_pred             CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence            478999999999999999999999886554 3     45666 7887543  34443    3444566556556788888


Q ss_pred             CcCCCCCHHHH
Q 044927          317 DPLGMYSDNEI  327 (467)
Q Consensus       317 ~~~~~~~~~~~  327 (467)
                      .+...++.++.
T Consensus       188 ~~~~~~~~e~~  198 (337)
T PTZ00035        188 AYARAYNHEHQ  198 (337)
T ss_pred             EEEccCCHHHH
Confidence            65444444433

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.18  E-value=1.2e-06  Score=90.75  Aligned_cols=70  Identities=27%  Similarity=0.437  Sum_probs=53.4

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEE---cCEeCCCCCHHHHh---cccEEE-----cC
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILI---DGLDICSMGLKDLR---TKLSII-----PQ  303 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i---~g~~i~~~~~~~~r---~~i~~v-----~Q  303 (467)
                      .+++++ |++.+|++++|+|+||||||||++.|+|+.++ +.|.|.+   +|.++.++..+.++   .+.+++     +|
T Consensus       153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q  231 (442)
T PRK06315        153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ  231 (442)
T ss_pred             EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence            378887 99999999999999999999999999999854 4466766   44666555444443   235566     88


Q ss_pred             CCc
Q 044927          304 EPT  306 (467)
Q Consensus       304 ~~~  306 (467)
                      +|.
T Consensus       232 ~p~  234 (442)
T PRK06315        232 SSQ  234 (442)
T ss_pred             CHH
Confidence            774

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.17  E-value=2.7e-06  Score=85.00  Aligned_cols=59  Identities=22%  Similarity=0.359  Sum_probs=49.2

Q ss_pred             eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 044927          225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD  285 (467)
Q Consensus       225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~  285 (467)
                      .++..|..+ ..+++++ +++.+|++++|+|+||+|||||+++|+|...|+.|.+..-|.+
T Consensus        48 ~~~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          48 PIDEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             cceeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            334445433 3489999 9999999999999999999999999999999999888776644

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR00152 dephospho-CoA kinase

Probab=98.15  E-value=4.7e-06  Score=77.08  Aligned_cols=70  Identities=10%  Similarity=0.074  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhH--H-hhcCEEEEEeCC
Q 044927          360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPT--I-TDSDMFMVLSYG  431 (467)
Q Consensus       360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~--~-~~~d~i~vl~~G  431 (467)
                      .|+-+|..||.++..+|+.+..+|  +-+||...+.+.+.+.+... +.++++.+|.+..  + ..||++++++.+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            378899999999999999988887  78999999999998887643 4799999999854  3 359999998875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=6.1e-06  Score=83.91  Aligned_cols=36  Identities=31%  Similarity=0.388  Sum_probs=32.8

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++++.++.+++|++++++||||+||||++..|++.+
T Consensus       126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            577788889999999999999999999999999865

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.14  E-value=1.5e-06  Score=64.91  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=30.5

Q ss_pred             ecceeEEEeC-CcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 044927          238 LKGITCTFKE-GTRVGVVGRTGSGKTTLISALFRLVEPEN  276 (467)
Q Consensus       238 L~~isl~i~~-Ge~~~ivG~sGsGKSTll~~l~gl~~p~~  276 (467)
                      +++-.+++.+ |+.+.|.|||||||||++.++.=++-|..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            3445677775 57999999999999999999886665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	467
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		2e-32
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		2e-32
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		4e-29
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		5e-27
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		5e-27
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		6e-27
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		4e-26
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		6e-26
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		2e-25
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-24
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		4e-24
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		5e-24
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		2e-23
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		2e-23
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		3e-23
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		4e-23
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		4e-22
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		4e-22
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		4e-22
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-20
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-19
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		3e-19
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		3e-19
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		4e-19
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		5e-19
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		1e-18
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		8e-08
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		2e-06
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		6e-06
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		2e-05
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		3e-05
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		4e-05
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		1e-04
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		1e-04
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		1e-04
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		1e-04
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-04
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		4e-04
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		7e-04
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		9e-04

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 151/293 (51%), Gaps = 13/293 (4%)
Query: 181 NLSNNIV----SVERIRQFMHLPPEPPAIIEETKPPASWPS-HGRIELEDLKVRYRPNTP 235
           N+ N IV    S +R+ + ++   E PAI EE     + P+  G +  E+++ RY  NT 
Sbjct: 301 NILNFIVRASASAKRVLEVLN---EKPAI-EEADNALALPNVEGSVSFENVEFRYFENTD 356
Query: 236 LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLR 295
            VL G+  + K                 L++ + RL++PE GR+ +D LD+ ++ LKDLR
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 296 TKLSIIPQEPTLFRGSVRTNLD-PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
             +S +PQE  LF G+++ NL       +D+EI EA +  Q+   I  LP   DS V   
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
           G N+S GQ+Q   + R L+K+ ++L+LD+ T+S+D  T+  +   ++    G T   +  
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 415 RVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNSMQD 467
           ++PT   +D  +VL  G++  +    +L+E    + ++   Y S +    M D
Sbjct: 537 KIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREI---YESQFGNGVMND 586

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 3/249 (1%)
Query: 215 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEP 274
           WPS G++ ++DL  +Y      +L+ I+ +                   L+SA  RL+  
Sbjct: 14  WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 275 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKC 334
           E G I IDG+   S+ L+  R    +IPQ+  +F G+ R NLDP   +SD EIW+  ++ 
Sbjct: 74  E-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
            L++ I + P  LD  + D G   S G +QL CL R +L + +IL+LDE +A +D  T  
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454
           I++R +++ F   TVI    R+  + + D F+V+   ++ +YD  S L   +    + VA
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYD--SILELYHYPADRFVA 250
Query: 455 EYRSSYKRN 463
            +  S K N
Sbjct: 251 GFIGSPKMN 259

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 204/450 (45%), Gaps = 37/450 (8%)
Query: 17  SAISLSAAATTDVFIIISVMASVTWPVL-IVAIPTVIVAKYIQGYYLSSARELMRMNGTT 75
           S I   A A   +F +  +++ VT  ++ +  + T IV+   + Y+  + R L ++NG  
Sbjct: 160 SGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGII 219
Query: 76  KAPIVNFAAETSQGVVSIRAF----KMMDMF--FENYLKLVDTDARLFFHSNAATEWLVL 129
           +  I         G+  I+ F    K M+ F      L+ V T A++F         +V 
Sbjct: 220 EEDI--------SGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVN 271
Query: 130 RIEXXXXXXXXXXXXXXXXXPGKHLPGFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSV 189
            +                      +  F+G S  +   L+     ++  +  +   + S 
Sbjct: 272 NLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNE----LSNQFNMIQMALASA 327
Query: 190 ERIRQFMHLPPE---PPAI-IEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTF 245
           ERI + + L  E   P A+ + E +        G IE +++   Y    P VLK IT   
Sbjct: 328 ERIFEILDLEEEKDDPDAVELREVR--------GEIEFKNVWFSYDKKKP-VLKDITFHI 378
Query: 246 KEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 305
           K                 +++ L R  + + G+IL+DG+DI  +    LR+ + I+ Q+ 
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438
Query: 306 TLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ 362
            LF  +V+ NL   +P    +D EI EA +       I  LP   ++ ++D GE+ S GQ
Sbjct: 439 ILFSTTVKENLKYGNPGA--TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496
Query: 363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDS 422
           RQL  + R  L   +IL+LDEAT+++D+ T+  +Q  + +   G T I +AHR+ TI ++
Sbjct: 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA 556
Query: 423 DMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           D+ +VL  GE+VE     +L++    + +L
Sbjct: 557 DLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 22/267 (8%)
Query: 205  IIEETKPPASWPSHG--------RIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXX 254
            IIE+T    S+ + G         ++   +   Y  RP+ P VL+G++   K+       
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALV 1065
Query: 255  XXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314
                     ++  L R  +P  G + +DG +I  + ++ LR +L I+ QEP LF  S+  
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 315  NLDPLGMYSDN-------EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367
            N+     Y DN       EI  A ++  +   I  LP   ++ V D+G   S GQ+Q   
Sbjct: 1126 NI----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 368  LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV 427
            + R L+++  IL+LDEAT+++D+ ++ ++Q  + +   G T I +AHR+ TI ++D+ +V
Sbjct: 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241
Query: 428  LSYGELVEYDLPSKLMETNSAFSKLVA 454
            +  G++ E+    +L+     +  +V+
Sbjct: 1242 IQNGKVKEHGTHQQLLAQKGIYFSMVS 1268

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 22/267 (8%)
Query: 205  IIEETKPPASWPSHG--------RIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXX 254
            IIE+T    S+ + G         ++   +   Y  RP+ P VL+G++   K+       
Sbjct: 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALV 1065
Query: 255  XXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT 314
                     ++  L R  +P  G + +DG +I  + ++ LR +L I+ QEP LF  S+  
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 315  NLDPLGMYSDN-------EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC 367
            N+     Y DN       EI  A ++  +   I  LP   ++ V D+G   S GQ+Q   
Sbjct: 1126 NI----AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 368  LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV 427
            + R L+++  IL+LDEAT+++D+ ++ ++Q  + +   G T I +AHR+ TI ++D+ +V
Sbjct: 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241
Query: 428  LSYGELVEYDLPSKLMETNSAFSKLVA 454
            +  G++ E+    +L+     +  +V+
Sbjct: 1242 IQNGKVKEHGTHQQLLAQKGIYFSMVS 1268

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 223 LEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILID 282
           L D+    +PN+ +   G +   K                 + S L R  +P  G I ID
Sbjct: 18  LRDISFEAQPNSIIAFAGPSGGGK---------------STIFSLLERFYQPTAGEITID 62
Query: 283 GLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL--DPLGMYSDNEIWEAMEKCQLKATI 340
           G  I ++ L++ R+++  + Q+  +  G++R NL     G Y+D ++W+ ++    ++ +
Sbjct: 63  GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 341 SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRII 400
             +P  L++ V + G   S GQRQ   + R  L+  +IL+LDEATAS+DS +++++Q+ +
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 401 REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455
                G T + +AHR+ TI D+D    +  G++      ++L+ T+  ++K V+E
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 194/460 (42%), Gaps = 38/460 (8%)
Query: 14  DLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNG 73
           +L   +   A A+  + ++  V  ++   VL V  P  I+A  I G YL   R+L ++  
Sbjct: 139 NLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIA-VIYGRYL---RKLTKVTQ 194
Query: 74  TTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVD-----------TDARLFFHSNA 122
            + A     A E    V ++RAF       E Y   VD             A  F  +  
Sbjct: 195 DSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGL 254
Query: 123 ATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPGF-VGLSLSYALTLSSIQVIMTRWYCN 181
           +   +VL +                      +  F VG+S+            ++ +Y  
Sbjct: 255 SGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGG----------LSSFYSE 304
Query: 182 LSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY--RPNTPLVLK 239
           L   + +  R+ + +   P+ P    E          G +E +++   Y  RP  P + +
Sbjct: 305 LMKGLGAGGRLWELLEREPKLP--FNEGVILNEKSFQGALEFKNVHFAYPARPEVP-IFQ 361
Query: 240 GITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS 299
             + +                   ++S L RL +P +G I +DG DI  +    LR+K+ 
Sbjct: 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421
Query: 300 IIPQEPTLFRGSVRTNL-----DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
            + QEP LF  S+  N+     DP  + ++ EI    E     A I   P   ++ V ++
Sbjct: 422 TVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQGFNTVVGEK 480
Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
           G   S GQ+Q   + R LLK  +IL+LDEAT+++D+  + ++Q  +     G TV+ +AH
Sbjct: 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH 540
Query: 415 RVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLV 453
           R+ TI +++M  VL  G++ EY    +L+   N  + KL+
Sbjct: 541 RLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 131/250 (52%), Gaps = 8/250 (3%)
Query: 218  HGRIELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE 275
            +G++  ++++  Y  RP    +LKG++ + +                 +++ L R  +  
Sbjct: 1074 YGKVIFKNVRFAYPERPEIE-ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132
Query: 276  NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN----LDPLGMYSDNEIWEAM 331
             G I IDG +I ++  +  R++++I+ QEPTLF  S+  N    LDP  + +  ++ EA 
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV-TMAQVEEAA 1191
Query: 332  EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
                +   I+ LP   ++ V D G   S GQ+Q   + R L++  +IL+LDEAT+++D+ 
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 1251
Query: 392  TDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451
            ++ ++Q  +     G T I +AHR+ T+ ++D   V+S G ++E    ++LM    A+ K
Sbjct: 1252 SEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYK 1311
Query: 452  LVAEYRSSYK 461
            L  +  +  K
Sbjct: 1312 LTQKQMTEKK 1321

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 196/463 (42%), Gaps = 44/463 (9%)
Query: 14  DLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNG 73
           +L   +   A A+  + ++  V  ++   VL V  P  I+A  I G YL   R+L ++  
Sbjct: 170 NLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIA-VIYGRYL---RKLTKVTQ 225
Query: 74  TTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVD-----------TDARLFFHSNA 122
            + A     A E    V ++RAF       E Y   VD             A  F  +  
Sbjct: 226 DSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGL 285
Query: 123 ATEWLVLRIEXXXXXXXXXXXXXXXXXPGKHLPGF-VGLSLSYALTLSSIQVIMTRWYCN 181
           +   +VL +                      +  F VG+S+            ++ +Y  
Sbjct: 286 SGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGG----------LSSFYSE 335
Query: 182 LSNNIVSVERIRQFMHLPPEPP---AIIEETKPPASWPSHGRIELEDLKVRY--RPNTPL 236
           L   + +  R+ + +   P+ P    +I   K        G +E +++   Y  RP  P 
Sbjct: 336 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKS-----FQGALEFKNVHFAYPARPEVP- 389
Query: 237 VLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
           + +  + +                   ++S L RL +P +G I +DG DI  +    LR+
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 297 KLSIIPQEPTLFRGSVRTNL-----DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351
           K+  + QEP LF  S+  N+     DP  + ++ EI    E     A I   P   ++ V
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVIT 411
            ++G   S GQ+Q   + R LLK  +IL+LDEAT+++D+  + ++Q  +     G TV+ 
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 568
Query: 412 VAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKLV 453
           +AH + TI +++M  VL  G++ EY    +L+ + N  + KL+
Sbjct: 569 IAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 131/276 (47%), Gaps = 6/276 (2%)
Query: 179 YCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL 238
           +  L+ +  S++R+ Q   L  E   I             GRI+++ +  +Y  N   +L
Sbjct: 301 FTTLTQSFASMDRVFQ---LIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPIL 357
Query: 239 KGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL 298
           K I  + ++                LI+ + R  +  +G+ILIDG +I       LR ++
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417
Query: 299 SIIPQEPTLFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE 356
            ++ Q+  LF  +V+ N+  LG    +D E+ EA +       I  LP   D+ V + G 
Sbjct: 418 GLVQQDNILFSDTVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476
Query: 357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRV 416
             S GQ+Q   + R+ L    IL+LDEAT+++D  +++I+Q  +       T + VAHR+
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 536
Query: 417 PTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
            TIT +D  +V+  G +VE     +L+    A+  L
Sbjct: 537 STITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 6/239 (2%)
Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 277
           H  I   +++ RY+P++P++L  I  + K+                L   + R   PENG
Sbjct: 1   HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKC 334
           ++LIDG D+       LR ++ ++ Q+  L   S+  N+   +P GM  +  I+ A +  
Sbjct: 61  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLA 118
Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
                IS L    ++ V ++G   S GQRQ   + R L+   +IL+ DEAT+++D  ++ 
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
           ++ R + +   G TVI +AHR+ T+ ++D  +V+  G++VE     +L+ E  S +S L
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 6/239 (2%)
Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 277
           H  I   +++ RY+P++P++L  I  + K+                L   + R   PENG
Sbjct: 1   HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKC 334
           ++LIDG D+       LR ++ ++ Q+  L   S+  N+   +P GM  +  I+ A +  
Sbjct: 61  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLA 118
Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
                IS L    ++ V ++G   S GQRQ   + R L+   +IL+ DEAT+++D  ++ 
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
           ++ R + +   G TVI +AHR+ T+ ++D  +V+  G++VE     +L+ E  S +S L
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
           I   +++ RY+P++P++L  I  + K+                L   + R   PENG++L
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
           IDG D+       LR ++ ++ Q+  L   S+  N+   +P GM  +  I+ A +     
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 119
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
             IS L    ++ V ++G   S GQRQ   + R L+   +IL+ DEAT+++D  ++ ++ 
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
           R + +   G TVI +AHR+ T+ ++D  +V+  G++VE     +L+ E  S +S L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
           I   +++ RY+P++P++L  I  + K+                L   + R   PENG++L
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
           IDG D+       LR ++ ++ Q+  L   S+  N+   +P GM  +  I+ A +     
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
             IS L    ++ V ++G   S GQRQ   + R L+   +IL+ DEAT+++D  ++ ++ 
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
           R + +   G TVI +AHR+ T+ ++D  +V+  G++VE     +L+ E  S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 118/237 (49%), Gaps = 2/237 (0%)
Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENG 277
           +G ++++D+   Y+      L  ++ +  +                + +   R  + ++G
Sbjct: 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398
Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYSDNEIWEAMEKCQ 335
            I +DG D+    L +LR   +++ Q   LF  ++  N+     G Y+  +I +A  +  
Sbjct: 399 SICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAH 458
Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
               I  +P  LD+ + + G + S GQRQ   + R LL+   +L+LDEAT+++D+ ++  
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 396 LQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           +Q  + E     TV+ +AHR+ TI  +D  +V+  GE++E    + L+  + A+++L
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
           I   +++ RY+P++P++L  I  + K+                L   + R   PENG++L
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
           IDG D+       LR ++ ++ Q+  L   S+  N+   +P GM  +  I+ A +     
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
             IS L    ++ V ++G   S GQRQ   + R L+   +IL+ D+AT+++D  ++ ++ 
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
           R + +   G TVI +AHR+ T+ ++D  +V+  G++VE     +L+ E  S +S L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
           I   +++ RY+P++P++L  I  + K+                L   + R   PENG++L
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
           IDG D+       LR ++ ++ Q+  L   S+  N+   +P GM  +  I+ A +     
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 119
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
             IS L    ++ V ++G   S GQRQ   + R L+   +IL+ DEAT+++D  ++ ++ 
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
           R + +   G TVI +A R+ T+ ++D  +V+  G++VE     +L+ E  S +S L
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 6/236 (2%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
           I   +++ RY+P++P++L  I  + K+                L   + R   PENG++L
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLK 337
           IDG D+       LR ++ ++ Q+  L   S+  N+   +P GM  +  I+ A +     
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIY-AAKLAGAH 125
Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
             IS L    ++ V ++G   S GQRQ   + R L+   +IL+ DEAT+++D  ++ ++ 
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSKL 452
           R + +   G TVI +A R+ T+ ++D  +V+  G++VE     +L+ E  S +S L
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 268 LFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY----- 322
           L+R  + E G I I G ++       +R+ + I+PQ+  LF  +++ N+    +Y     
Sbjct: 66  LYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLDA 120
Query: 323 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD 382
           +D E+ +A +  QL   I  LP   D+ V ++G   S G+RQ   + R LLK  +I++ D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 383 EATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL 442
           EAT+S+DS T+ + Q+ + +     T+I +AHR+ TI+ ++  ++L+ G++VE      L
Sbjct: 181 EATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDL 240
Query: 443 METNSAFSKL 452
           ++ N  ++++
Sbjct: 241 LKLNGEYAEM 250

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 11/243 (4%)
Query: 219 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
           G ++ +D+   Y PN P   VL+G+T T                   + + L  L +P  
Sbjct: 15  GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 332
           G++L+DG  +       L T+++ + QEP LF  S R N+   G+     + E    AME
Sbjct: 74  GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
                  IS  P   D+ V + G   S GQRQ   L R L+++ R+L+LD+AT+++D+  
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
              +QR++ E  E+   TV+ + H++     +   + L  G + E     +LME    + 
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 451 KLV 453
            +V
Sbjct: 252 SMV 254

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 11/243 (4%)
Query: 219 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
           G ++ +D+   Y PN P   VL+G+T T                   + + L  L +P  
Sbjct: 15  GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 332
           G++L+DG  +       L T+++ + QEP LF  S R N+   G+     + E    AME
Sbjct: 74  GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
                  IS  P   D+ V + G   +VGQRQ   L R L+++ R+L+LD AT+++D+  
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
              +QR++ E  E+   TV+ +  ++     +   + L  G + E     +LME    + 
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 451 KLV 453
            +V
Sbjct: 252 SMV 254

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Query: 266 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYS 323
           S + R  + + G IL+DG D+    L  LR +++++ Q   LF  +V  N+       YS
Sbjct: 387 SLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYS 446
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
             +I EA         I+++   LD+ + + G   S GQRQ   + R LL+ + IL+LDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 384 ATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443
           AT+++D+ ++  +Q  + E     T + +AHR+ TI  +D  +V+  G +VE    + L+
Sbjct: 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL 566
Query: 444 ETNSAFSKL 452
           E    +++L
Sbjct: 567 EHRGVYAQL 575

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 5/245 (2%)
Query: 212 PASWP---SHGRIELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISAL 268
           P + P     GRIE E++   Y  +    L+ ++ T                   ++  L
Sbjct: 42  PGAGPLRFQKGRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
Query: 269 FRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN-EI 327
           FR  +  +G I IDG DI  +    LR+ + ++PQ+  LF  ++  N+    + + N E+
Sbjct: 101 FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160
Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
             A +   +   I   P    + V + G   S G++Q   + R +LK   I++LDEAT++
Sbjct: 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSA 220
Query: 388 IDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNS 447
           +D++ +  +Q  + +     T I VAHR+ T+ ++D  +V+  G +VE      L+    
Sbjct: 221 LDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGG 280
Query: 448 AFSKL 452
            ++ +
Sbjct: 281 VYADM 285

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 266 SALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM--YS 323
           S + R  + + G IL+DG D+    L  LR +++++ Q   LF  +V  N+       YS
Sbjct: 387 SLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYS 446
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
             +I EA         I+++   LD+ + + G   S GQRQ   + R LL+ + IL+LDE
Sbjct: 447 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 384 ATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443
           AT+++D+ ++  +Q  + E     T + +AHR+ TI  +D  +V+  G +VE    S+L+
Sbjct: 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Query: 444 ETNSAFSKL 452
             +  +++L
Sbjct: 567 AQHGVYAQL 575

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 11/243 (4%)
Query: 219 GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPEN 276
           G ++ +D+   Y PN P   VL+G+T T                   + + L  L +P  
Sbjct: 15  GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE----AME 332
           G++L+DG  +       L T+++ + QEP LF  S R N+   G+     + E    AME
Sbjct: 74  GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI-AYGLTRTPTMEEITAVAME 132
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
                  IS  P   D+ V + G   S GQRQ   L R L+++ R+L+LD AT+++D+  
Sbjct: 133 SGA-HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
              +QR++ E  E+   TV+ +  ++     +   + L  G + E     +LME    + 
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 451 KLV 453
            +V
Sbjct: 252 SMV 254

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 13/254 (5%)
Query: 211 PPASW--PSH--GRIELEDLKVRYRPNTP--LVLKGITCTFKEXXXXXXXXXXXXXXXXL 264
           PP+    P H  G ++ +D+   Y PN P  LVL+G+T T +                 +
Sbjct: 1   PPSGLLTPLHLEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 265 ISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSD 324
            + L  L +P  G++L+DG  +     + L  +++ + QEP +F  S++ N+   G+   
Sbjct: 60  AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIA-YGLTQK 118
Query: 325 ---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381
               EI  A  K    + IS LP   D+ V + G   S GQRQ   L R L+++  +L+L
Sbjct: 119 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 178
Query: 382 DEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP 439
           D+AT+++D+ +   +++++ E  E    +V+ +   +  +  +D  + L  G + E    
Sbjct: 179 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTH 238
Query: 440 SKLMETNSAFSKLV 453
            +LME    +  +V
Sbjct: 239 QQLMEKKGCYWAMV 252

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 16/227 (7%)
Query: 235 PLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRILIDGLDICSMGLKDL 294
           P  L GIT +  E                L+SAL   ++   G + I G           
Sbjct: 18  PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----------- 66
Query: 295 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
              ++ +PQ+  +   S+R N+       +      ++ C L   +  LP    + + ++
Sbjct: 67  --SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEK 124
Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA-ILQRII--REEFPGSTVIT 411
           G N S GQ+Q   L R +     I + D+  +++D+     I + +I  +      T I 
Sbjct: 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184
Query: 412 VAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS 458
           V H +  +   D+ +V+S G++ E     +L+  + AF++ +  Y S
Sbjct: 185 VTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYAS 231

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 264 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 320
           LI  +  L  P  G +L+DG ++ ++   +L   R ++ +I Q   L           L 
Sbjct: 47  LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106
Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 376
           +  DN       K ++K  ++ L  L+   + D+ +    N S GQ+Q   + R L    
Sbjct: 107 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 159
Query: 377 RILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
           ++L+ DEAT+++D AT   +  ++++     G T++ + H +  +    D   V+S GEL
Sbjct: 160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
Query: 434 VEYDLPSKL 442
           +E D  S++
Sbjct: 220 IEQDTVSEV 228

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 264 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 320
           LI  +  L  P  G +L+DG ++ ++   +L   R ++ +I Q   L           L 
Sbjct: 70  LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129
Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 376
           +  DN       K ++K  ++ L  L+   + D+ +    N S GQ+Q   + R L    
Sbjct: 130 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 182
Query: 377 RILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
           ++L+ D+AT+++D AT   +  ++++     G T++ + H +  +    D   V+S GEL
Sbjct: 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
Query: 434 VEYDLPSKL 442
           +E D  S++
Sbjct: 243 IEQDTVSEV 251

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 17/190 (8%)
Query: 264 LISALFRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGSVRTNLDPLG 320
           LI  +  L  P  G +L+DG ++ ++   +L   R ++  I Q   L           L 
Sbjct: 70  LIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALP 129
Query: 321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE----NWSVGQRQLFCLGRVLLKRN 376
           +  DN       K ++K  ++ L  L+   + D+ +    N S GQ+Q   + R L    
Sbjct: 130 LELDN-----TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 182
Query: 377 RILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
           ++L+ D+AT+++D AT   +  ++++     G T++ + H    +    D   V+S GEL
Sbjct: 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
Query: 434 VEYDLPSKLM 443
           +E D  S++ 
Sbjct: 243 IEQDTVSEVF 252

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 20/243 (8%)
Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPENGRIL 280
           +++E+L   Y   T   LKGI    K                 L      +++P +GRIL
Sbjct: 8   LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 281 IDG--LDICSMGLKDLRTKLSIIPQEP--TLFRGSVRTNLDPLGMYS----DNEIWEAME 332
            D   +D    G+  LR  + I+ Q+P   LF  SV  ++   G  +    ++EI + ++
Sbjct: 67  FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDV-SFGAVNMKLPEDEIRKRVD 125
Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
               +  I  L               S GQ++   +  VL+   ++L+LDE TA +D   
Sbjct: 126 NALKRTGIEHLK-------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 393 DAILQRIIRE--EFPGSTVITVAHRVPTI-TDSDMFMVLSYGELVEYDLPSKLMETNSAF 449
            + + +++ E  +  G T+I   H +  +    D   V+  G ++    P ++       
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI 238
Query: 450 SKL 452
            K+
Sbjct: 239 RKV 241

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 17/194 (8%)
Query: 271 LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWE 329
           +V+P+ G + ++G DI    L   R  +  +PQ+  LF   SV  N+   G+ +   +  
Sbjct: 47  IVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPHLSVYRNI-AYGLRNVERVER 103
Query: 330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID 389
                ++   +  +  LLD   +      S G+RQ   L R L+ + R+L+LDE  +++D
Sbjct: 104 DRRVREMAEKLG-IAHLLDRKPA----RLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
Query: 390 SATDAILQ---RIIREEFPGSTVITVAHR-VPTITDSDMFMVLSYGELVEYDLPSKLMET 445
             T  +L    R ++ EF    ++ V H  +     +D   V+  G +VE     KL E 
Sbjct: 159 LKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVE---KGKLKEL 214
Query: 446 NSAFSKLVAEYRSS 459
            SA +  VAE+ S+
Sbjct: 215 FSAKNGEVAEFLSA 228

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEA 330
           +EP  G+I   G             ++S   Q   +  G+++ N+  +G+ Y +      
Sbjct: 88  LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
           ++ CQL+  IS+     +  + + G   S GQR    L R + K   + +LD     +D 
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 391 ATDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS------YGELVEY-----DL 438
            T+  I +  + +     T I V  ++  +  +D  ++L       YG   E      D 
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Query: 439 PSKLMETNSAFSKLVAEYRSS 459
            SKLM  +S F +  AE R+S
Sbjct: 253 SSKLMGCDS-FDQFSAERRNS 272

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAM 331
           +EP  G+I   G             ++S   Q   +  G+++ N+     Y +      +
Sbjct: 88  LEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVI 134
Query: 332 EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
           + CQL+  IS+     +  + + G   S GQR    L R + K   + +LD     +D  
Sbjct: 135 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 194
Query: 392 TDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS------YGELVEY-----DLP 439
           T+  I +  + +     T I V  ++  +  +D  ++L       YG   E      D  
Sbjct: 195 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 254
Query: 440 SKLMETNSAFSKLVAEYRSS 459
           SKLM  +S F +  AE R+S
Sbjct: 255 SKLMGCDS-FDQFSAERRNS 273

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 272 VEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIWEA 330
           +EP  G+I   G             ++S   Q   +  G+++ N+  +G+ Y +      
Sbjct: 88  LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI--IGVSYDEYRYRSV 132
Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
           ++ CQL+  IS+     +  + + G   S GQR    L R + K   + +LD     +D 
Sbjct: 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 391 ATDA-ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS------YGELVEY-----DL 438
            T+  I +  + +     T I V  ++  +  +D  ++L       YG   E      D 
Sbjct: 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Query: 439 PSKLMETNSAFSKLVAEYRSS 459
            SKLM  +S F +  AE R+S
Sbjct: 253 SSKLMGCDS-FDQFSAERRNS 272

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIR--E 402
           +L+D+ +  +    S GQ+Q   L R L+K+ ++L+ DE  +++D+    I++  I+  +
Sbjct: 121 LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180
Query: 403 EFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYK 461
           +  G T + V H +   +T +    V + G+LV+Y  P ++   +S  +  VA +  +  
Sbjct: 181 QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY--DSPKNMFVASFIGNPP 238
Query: 462 RNSMQD 467
            N ++D
Sbjct: 239 TNFLRD 244

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 324 DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
           D  + E  E   L   ++R P  L           S GQRQ   LGR +++R ++ + DE
Sbjct: 120 DKRVREVAEXLGLTELLNRKPREL-----------SGGQRQRVALGRAIIRRPKVFLXDE 168
Query: 384 ATASIDS----ATDAILQRIIREEFPGSTVITVAH-RVPTITDSDMFMVLSYGELVEYDL 438
             +++D+       A L+++ R+   G T I V H +V   T  D   V + GEL +   
Sbjct: 169 PLSNLDAKLRVKXRAELKKLQRQ--LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
Query: 439 PSKL 442
           P ++
Sbjct: 227 PDEV 230

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 46/248 (18%)
Query: 221 IELEDLKVRY--RPNTPLVLKGITCTFKEXXXXXXXXXXXXXXXXLISALFRLVEPE--- 275
           I +EDL+  Y  R  T     GI+    E                +I A+ + + P    
Sbjct: 5   IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 276 -NGRILIDGLDICSMGLKDLR----TKLSIIPQ------EPTL-----FRGSVRTNLDPL 319
            +GR+L  G D+ +M  ++LR     +++++PQ       PT+     F+ +V  +    
Sbjct: 65  LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAH---- 120
Query: 320 GM-YSDNEIWE-AMEKCQL-----KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372
           G+ +S +E+ E A EK ++     +A ++  P+ L           S G +Q   +   L
Sbjct: 121 GVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQL-----------SGGMKQRVLIALAL 169
Query: 373 LKRNRILVLDEATASIDSATDA-ILQRIIREEFPGS-TVITVAHRVPTITD-SDMFMVLS 429
           L    +L+LDE T+++D  T A I+Q +   +     T+I V H +    + +D   V+ 
Sbjct: 170 LLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIY 229
Query: 430 YGELVEYD 437
            G LVEY+
Sbjct: 230 GGNLVEYN 237

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
           +LI G    S G+     ++S   Q   +  G+++ N+     Y +      ++ CQL+ 
Sbjct: 82  MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQ 141
Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQ 397
            I++     ++ + + G   S GQR    L R + K   + +LD     +D  T + + +
Sbjct: 142 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Query: 398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEY-----------DLPSKLMETN 446
             + +     T I V  ++  +  +D  ++L  G    Y           D  SKLM  +
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 261
Query: 447 SAFSKLVAEYRSS 459
           + F +   E RSS
Sbjct: 262 T-FDQFTEERRSS 273

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 288 SMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEK-CQLKATISRLPML 346
           S G+     ++S   Q   +  G+++ N+  +G+  D   ++++ K CQL+  I++    
Sbjct: 91  SEGIIKHSGRVSFCSQFSWIMPGTIKENI--IGVSYDEYRYKSVVKACQLQQDITKFAEQ 148
Query: 347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQRIIREEFP 405
            ++ + + G   S GQR    L R + K   + +LD     +D  T + + +  + +   
Sbjct: 149 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 208
Query: 406 GSTVITVAHRVPTITDSDMFMVLSYGELVEY-----------DLPSKLMETNSAFSKLVA 454
             T I V  ++  +  +D  ++L  G    Y           D  SKLM  ++ F +   
Sbjct: 209 NKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDT-FDQFTE 267
Query: 455 EYRSS 459
           E RSS
Sbjct: 268 ERRSS 272

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	467
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	1e-150
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	3e-64
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-62
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-61
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-61
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-61
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-57
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-59
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-59
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	8e-59
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-58
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-56
2ghi_A	260	Transport protein; multidrug resistance protein, M	2e-55
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-54
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	7e-35
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	1e-30
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	7e-29
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-26
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-26
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	8e-23
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	2e-21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-21
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	4e-18
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	4e-21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-21
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	8e-18
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-20
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	9e-16
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-20
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	4e-19
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	5e-18
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	8e-17
1ji0_A	240	ABC transporter; ATP binding protein, structural g	9e-14
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-10
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	7e-10
1b0u_A	262	Histidine permease; ABC transporter, transport pro	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-09
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	4e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-07
1g6h_A	257	High-affinity branched-chain amino acid transport	8e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	6e-07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-06
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	4e-04

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  432 bits (1112), Expect = e-150
 Identities = 93/266 (34%), Positives = 146/266 (54%), Gaps = 7/266 (2%)

Query: 204 AIIE--ETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGK 261
           ++IE    K    WPS G++ ++DL  +Y      +L+ I+ +   G RVG++GRTGSGK
Sbjct: 1   SLIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGK 60

Query: 262 TTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 321
           +TL+SA  RL+  E G I IDG+   S+ L+  R    +IPQ+  +F G+ R NLDP   
Sbjct: 61  STLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA 119

Query: 322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381
           +SD EIW+  ++  L++ I + P  LD  + D G   S G +QL CL R +L + +IL+L
Sbjct: 120 HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179

Query: 382 DEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSK 441
           DE +A +D  T  I++R +++ F   TVI    R+  + + D F+V+   ++ +YD   +
Sbjct: 180 DEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE 239

Query: 442 LME-TNSAFSKLVAEYRSSYKRNSMQ 466
           L       F         S K N + 
Sbjct: 240 LYHYPADRFVAGFIG---SPKMNFLP 262

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  216 bits (553), Expect = 3e-64
 Identities = 107/465 (23%), Positives = 196/465 (42%), Gaps = 32/465 (6%)

Query: 4   VSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLS 63
           V +D+      + + +         + I +S+M  +   + + A+            +  
Sbjct: 124 VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183

Query: 64  SARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAA 123
             R+L R      A +  F  E  QG+  +++F + D   +N+    D     F      
Sbjct: 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNF----DKKNTNFLTRALK 239

Query: 124 TEWLVLRIEALQNLIILTAALLIVLLPGKH----------LPGFVGLSLSYALTLSSIQV 173
                    A  N +     ++++ +              L  FVG        L  +  
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVA 299

Query: 174 IMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPS-HGRIELEDLKVRYRP 232
             T     L+ +  S++R+ Q +    +    I+            GRI+++ +  +Y  
Sbjct: 300 SFT----TLTQSFASMDRVFQLIDEDYD----IKNGVGAQPIEIKQGRIDIDHVSFQYND 351

Query: 233 NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK 292
           N   +LK I  + ++G  V  VG +G GK+TLI+ + R  +  +G+ILIDG +I      
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 411

Query: 293 DLRTKLSIIPQEPTLFRGSVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLPMLL 347
            LR ++ ++ Q+  LF  +V+ N+    +      +D E+ EA +       I  LP   
Sbjct: 412 SLRNQIGLVQQDNILFSDTVKENI----LLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 467

Query: 348 DSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGS 407
           D+ V + G   S GQ+Q   + R+ L    IL+LDEAT+++D  +++I+Q  +       
Sbjct: 468 DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR 527

Query: 408 TVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           T + VAHR+ TIT +D  +V+  G +VE     +L+    A+  L
Sbjct: 528 TTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  202 bits (516), Expect = 2e-62
 Identities = 76/242 (31%), Positives = 133/242 (54%), Gaps = 10/242 (4%)

Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           H  I   +++ RY+P++P++L  I  + K+G  +G+VGR+GSGK+TL   + R   PENG
Sbjct: 5   HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64

Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY-----SDNEIWEAME 332
           ++LIDG D+       LR ++ ++ Q+  L   S+  N+           S  ++  A +
Sbjct: 65  QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI----SLANPGMSVEKVIYAAK 120

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
                  IS L    ++ V ++G   S GQRQ   + R L+   +IL+ DEAT+++D  +
Sbjct: 121 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180

Query: 393 DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM-ETNSAFSK 451
           + ++ R + +   G TVI +AHR+ T+ ++D  +V+  G++VE     +L+ E  S +S 
Sbjct: 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240

Query: 452 LV 453
           L 
Sbjct: 241 LY 242

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  209 bits (534), Expect = 1e-61
 Identities = 95/458 (20%), Positives = 192/458 (41%), Gaps = 19/458 (4%)

Query: 4   VSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWP---VLIVAIP-TVIVAKYIQG 59
           ++ D   +      A+         +  +  +M   +W    +L+V  P   I  + +  
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187

Query: 60  YYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFH 119
            + S ++ +    G     +   A +  +G   +  F   ++  + + K+ +        
Sbjct: 188 RFRSISKNMQNTMGQ----VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK 243

Query: 120 SNAATEWLVLRIEALQNL---IILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMT 176
             +A+      I+ + +L    +L AA    ++          +  S    +  ++ +  
Sbjct: 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 303

Query: 177 RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPL 236
                    + + + +   +    E     E  +      + G +E  ++   Y      
Sbjct: 304 VNA-QFQRGMAACQTLFAILDSEQE---KDEGKRVID--RATGDLEFRNVTFTYPGREVP 357

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT 296
            L+ I      G  V +VGR+GSGK+T+ S + R  + + G IL+DG D+    L  LR 
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417

Query: 297 KLSIIPQEPTLFRGSVRTN--LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDE 354
           +++++ Q   LF  +V  N        YS  +I EA         I+++   LD+ + + 
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477

Query: 355 GENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH 414
           G   S GQRQ   + R LL+ + IL+LDEAT+++D+ ++  +Q  + E     T + +AH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537

Query: 415 RVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           R+ TI  +D  +V+  G +VE    S+L+  +  +++L
Sbjct: 538 RLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  208 bits (533), Expect = 3e-61
 Identities = 96/468 (20%), Positives = 204/468 (43%), Gaps = 39/468 (8%)

Query: 4   VSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWP---VLIVAIP-TVIVAKYIQG 59
           ++ D   +      A+         +  ++++M   +W    VLIV  P       ++  
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187

Query: 60  YYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFH 119
            +   +R +    G     + + A +  +G   + ++   ++  + + K+ ++  +    
Sbjct: 188 RFRKISRNMQTAMGH----VTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK 243

Query: 120 SNAATEWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVGLSLSYALTLSSIQVIMT--- 176
             +A       I+     +I + AL  VL            S+   LT  +  V+ +   
Sbjct: 244 LVSAQSIADPVIQ-----MIASLALFAVLFLASVD------SIRAELTPGTFTVVFSAMF 292

Query: 177 ------RWYCNLSNNI----VSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDL 226
                 +   ++++       + + +   M L  E                +G ++++D+
Sbjct: 293 GLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGKYEAE--RVNGEVDVKDV 347

Query: 227 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI 286
              Y+      L  ++ +  +G  V +VGR+GSGK+T+ +   R  + ++G I +DG D+
Sbjct: 348 TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407

Query: 287 CSMGLKDLRTKLSIIPQEPTLFRGSVRTN--LDPLGMYSDNEIWEAMEKCQLKATISRLP 344
               L +LR   +++ Q   LF  ++  N      G Y+  +I +A  +      I  +P
Sbjct: 408 RDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF 404
             LD+ + + G + S GQRQ   + R LL+   +L+LDEAT+++D+ ++  +Q  + E  
Sbjct: 468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527

Query: 405 PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
              TV+ +AHR+ TI  +D  +V+  GE++E    + L+  + A+++L
Sbjct: 528 KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  215 bits (549), Expect = 3e-61
 Identities = 99/450 (22%), Positives = 201/450 (44%), Gaps = 22/450 (4%)

Query: 17   SAISLSAAATTDVFIIISVMASVTWP---VLIVAIPTVIVAKYIQGYYLSSARELMRMNG 73
            S +++      ++   I +     W    +L+  +P + +A  ++   LS        + 
Sbjct: 827  SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQAL---KDK 883

Query: 74   TTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEA 133
                     A E  +   ++ +      F   Y + +    R   ++        +    
Sbjct: 884  KELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYR---NAMKKAHVFGITFSF 940

Query: 134  LQNLIILTAALL----IVLLPGKHLPGFVGLSLSYALTLSSIQVIMT-RWYCNLSNNIVS 188
             Q ++  + A        L+  + +     L +  A+   ++ V     +  + +   VS
Sbjct: 941  TQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVS 1000

Query: 189  VERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRY--RPNTPLVLKGITCTFK 246
               I + +   PE  +   +   P      G ++   +   Y  RP+ P VL+G++   K
Sbjct: 1001 ASHIIRIIEKTPEIDSYSTQGLKPNM--LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVK 1057

Query: 247  EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 306
            +G  + +VG +G GK+T++  L R  +P  G + +DG +I  + ++ LR +L I+ QEP 
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI 1117

Query: 307  LFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363
            LF  S+  N+   D   + S  EI  A ++  +   I  LP   ++ V D+G   S GQ+
Sbjct: 1118 LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177

Query: 364  QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSD 423
            Q   + R L+++  IL+LDEAT+++D+ ++ ++Q  + +   G T I +AHR+ TI ++D
Sbjct: 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNAD 1237

Query: 424  MFMVLSYGELVEYDLPSKLMETNSAFSKLV 453
            + +V+  G++ E+    +L+     +  +V
Sbjct: 1238 LIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  203 bits (518), Expect = 4e-57
 Identities = 112/483 (23%), Positives = 205/483 (42%), Gaps = 61/483 (12%)

Query: 13  FDLPSAISLSAAATTDVFII---------------------ISVMASVTWP---VLIVAI 48
           FD+     L+   T DV  I                       +  +  W    V++   
Sbjct: 159 FDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAIS 218

Query: 49  PTVIVAKYIQGYYLSSARELMRMNGTTKAPIVNFAAETSQGVVSIRAFKMMDMFFENYLK 108
           P + ++  I    LSS  +   ++   KA     A E    + ++ AF       E Y  
Sbjct: 219 PVLGLSAGIWAKILSSFTDKE-LHAYAKA--GAVAEEVLAAIRTVIAFGGQKKELERYNN 275

Query: 109 LVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL----IVLLPGKHLPG-------F 157
            ++   RL            + + A   LI  + AL       L+  K           F
Sbjct: 276 NLEEAKRLGIKKAI---TANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFF 332

Query: 158 VGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPS 217
             L  ++++  +S  +         +N   +   + + +   P   +  +    P +   
Sbjct: 333 SVLIGAFSVGQASPNIE------AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--I 384

Query: 218 HGRIELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE 275
            G +E +++   Y  R     +LKG+    K G  V +VG +G GK+T +  + RL +P 
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443

Query: 276 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY-----SDNEIWEA 330
           +G + IDG DI ++ ++ LR  + ++ QEP LF  ++  N+     Y     + +EI +A
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENI----RYGREDVTMDEIEKA 499

Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
           +++      I +LP   D+ V + G   S GQ+Q   + R L++  +IL+LDEAT+++D+
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559

Query: 391 ATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS 450
            ++A++Q  + +   G T I +AHR+ T+ ++D+      G +VE     +LM     + 
Sbjct: 560 ESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF 619

Query: 451 KLV 453
           KLV
Sbjct: 620 KLV 622

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  204 bits (522), Expect = 1e-59
 Identities = 90/264 (34%), Positives = 148/264 (56%), Gaps = 8/264 (3%)

Query: 187 VSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFK 246
            S +R+ + ++   E PAI E     A     G +  E+++ RY  NT  VL G+  + K
Sbjct: 311 ASAKRVLEVLN---EKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVK 367

Query: 247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT 306
            G+ V V+G TGSGK+TL++ + RL++PE GR+ +D LD+ ++ LKDLR  +S +PQE  
Sbjct: 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427

Query: 307 LFRGSVRTNL---DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363
           LF G+++ NL         +D+EI EA +  Q+   I  LP   DS V   G N+S GQ+
Sbjct: 428 LFSGTIKENLKWGREDA--TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485

Query: 364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSD 423
           Q   + R L+K+ ++L+LD+ T+S+D  T+  +   ++    G T   +  ++PT   +D
Sbjct: 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLAD 545

Query: 424 MFMVLSYGELVEYDLPSKLMETNS 447
             +VL  G++  +    +L+E   
Sbjct: 546 KILVLHEGKVAGFGTHKELLEHCK 569

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  193 bits (494), Expect = 3e-59
 Identities = 66/236 (27%), Positives = 130/236 (55%), Gaps = 3/236 (1%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +    +   Y  +   +L+ I+   +  + +   G +G GK+T+ S L R  +P  G I 
Sbjct: 2   LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYSDNEIWEAMEKCQLKA 338
           IDG  I ++ L++ R+++  + Q+  +  G++R NL     G Y+D ++W+ ++    ++
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
            +  +P  L++ V + G   S GQRQ   + R  L+  +IL+LDEATAS+DS +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180

Query: 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454
            +     G T + +AHR+ TI D+D    +  G++      ++L+ T+  ++K V+
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  194 bits (496), Expect = 8e-59
 Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 13/280 (4%)

Query: 178 WYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLV 237
                S+  + +E +   +    E   + +           GRIE E++   Y       
Sbjct: 14  LVPRGSHMFIDMENMFDLLKEETE---VKDLPGAGPLRFQKGRIEFENVHFSYADGRE-T 69

Query: 238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK 297
           L+ ++ T   G  + +VG +G+GK+T++  LFR  +  +G I IDG DI  +    LR+ 
Sbjct: 70  LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129

Query: 298 LSIIPQEPTLFRGSVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVS 352
           + ++PQ+  LF  ++  N+     Y      ++E+  A +   +   I   P    + V 
Sbjct: 130 IGVVPQDTVLFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185

Query: 353 DEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITV 412
           + G   S G++Q   + R +LK   I++LDEAT+++D++ +  +Q  + +     T I V
Sbjct: 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV 245

Query: 413 AHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL 452
           AHR+ T+ ++D  +V+  G +VE      L+     ++ +
Sbjct: 246 AHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  202 bits (516), Expect = 1e-58
 Identities = 131/483 (27%), Positives = 213/483 (44%), Gaps = 70/483 (14%)

Query: 17  SAISLSAAATTDVFIIISVMASVTWP---VLIVAIP-----TVIVAKYIQGYYLSSAREL 68
           S I   +   T    +I +M  V      V +  +P     T IV+   + Y+  + R L
Sbjct: 154 SIIQFFSGIVTLAGAVI-MMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVL 212

Query: 69  MRMNGTTKAPIVNFAAETSQGVVSIRAF----KMMDMFFENYLKLVDTDARLFFHSNAAT 124
            ++NG           E   G+  I+ F    K M+ F      L     +    S    
Sbjct: 213 GQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGV-- 262

Query: 125 EWLVLRIEALQNLIILTAALLIVLLPGKHLPGFVG--LSLSYALTLSSIQ--VIMTRWYC 180
                    L  L+ +   L   L+         G  L+L   +T+ +I   +  +R + 
Sbjct: 263 ---------LPPLMNMVNNLGFALI------SGFGGWLALKDIITVGTIATFIGYSRQFT 307

Query: 181 -------NLSNNIVS----VERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVR 229
                  N  N I       ERI + + L  E      +          G IE +++   
Sbjct: 308 RPLNELSNQFNMIQMALASAERIFEILDLEEEKD----DPDAVELREVRGEIEFKNVWFS 363

Query: 230 YRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 289
           Y    P+ LK IT   K G +V +VG TGSGKTT+++ L R  + + G+IL+DG+DI  +
Sbjct: 364 YDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422

Query: 290 GLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLP 344
               LR+ + I+ Q+  LF  +V+ NL     Y     +D EI EA +       I  LP
Sbjct: 423 KRSSLRSSIGIVLQDTILFSTTVKENL----KYGNPGATDEEIKEAAKLTHSDHFIKHLP 478

Query: 345 MLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF 404
              ++ ++D GE+ S GQRQL  + R  L   +IL+LDEAT+++D+ T+  +Q  + +  
Sbjct: 479 EGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538

Query: 405 PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNS 464
            G T I +AHR+ TI ++D+ +VL  GE+VE     +L++    + +L   + S Y    
Sbjct: 539 EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYEL---FTSQYGLVV 595

Query: 465 MQD 467
            ++
Sbjct: 596 EKE 598

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  184 bits (469), Expect = 2e-55
 Identities = 75/258 (29%), Positives = 132/258 (51%), Gaps = 13/258 (5%)

Query: 204 AIIEETKPPASWPSHGRIELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGK 261
            +   +           IE  D+   Y  + N    LK I      GT   +VG TGSGK
Sbjct: 1   GLESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGK 59

Query: 262 TTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM 321
           +T+   L+R  + E G I I G ++       +R+ + I+PQ+  LF  +++ N+    +
Sbjct: 60  STIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----L 114

Query: 322 Y-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376
           Y     +D E+ +A +  QL   I  LP   D+ V ++G   S G+RQ   + R LLK  
Sbjct: 115 YGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174

Query: 377 RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEY 436
           +I++ DEAT+S+DS T+ + Q+ + +     T+I +AHR+ TI+ ++  ++L+ G++VE 
Sbjct: 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK 234

Query: 437 DLPSKLMETNSAFSKLVA 454
                L++ N  ++++  
Sbjct: 235 GTHKDLLKLNGEYAEMWN 252

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  182 bits (465), Expect = 1e-54
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 7/242 (2%)

Query: 218 HGRIELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE 275
            G ++ +D+   Y   PN   VL+G+T T   G    +VG  GSGK+T+ + L  L +P 
Sbjct: 14  KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72

Query: 276 NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYSDNEIWEAMEK 333
            G++L+DG  +       L T+++ + QEP LF  S R N+        +  EI     +
Sbjct: 73  GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393
                 IS  P   D+ V + G   S GQRQ   L R L+++ R+L+LD AT+++D+   
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192

Query: 394 AILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK 451
             +QR++ E  E+   TV+ +  ++     +   + L  G + E     +LME    +  
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252

Query: 452 LV 453
           +V
Sbjct: 253 MV 254

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  130 bits (329), Expect = 7e-35
 Identities = 57/288 (19%), Positives = 105/288 (36%), Gaps = 35/288 (12%)

Query: 187 VSVERIRQFMHLPPE--PPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCT 244
           V +E +  F             +      +      +   +  +   P    VLK I   
Sbjct: 5   VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60

Query: 245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQE 304
            + G  + V G TG+GKT+L+  +   +EP  G+I   G             ++S   Q 
Sbjct: 61  IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107

Query: 305 PTLFRGSVRTNLDPLGMYSDNEI-WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR 363
             +  G+++ N+  +G+  D       ++ CQL+  IS+     +  + + G   S GQR
Sbjct: 108 SWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 165

Query: 364 QLFCLGRVLLKRNRILVLDEATASID--SATDA-----ILQRIIREEFPGSTVITVAHRV 416
               L R + K   + +LD            D      I +  + +     T I V  ++
Sbjct: 166 ARISLARAVYKDADLYLLD------SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219

Query: 417 PTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSYKRNS 464
             +  +D  ++L  G    Y   S+L      FS  +    S  + ++
Sbjct: 220 EHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSA 267

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  117 bits (295), Expect = 1e-30
 Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 38/249 (15%)

Query: 217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN 276
           +   + +E++   +      VLK I    + G  + V G TG+GKT+L+  +   +EP  
Sbjct: 3   TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62

Query: 277 GRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN------LDPLGMYSDNEIWEA 330
           G+I   G             ++S   Q   +  G+++ N       D    Y        
Sbjct: 63  GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDE-YRY-----RSV 103

Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID- 389
           ++ CQL+  IS+     +  + + G   S GQR    L R + K   + +LD        
Sbjct: 104 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD------SP 157

Query: 390 -SATDA-----ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443
               D      I +  + +     T I V  ++  +  +D  ++L  G    Y   S+L 
Sbjct: 158 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 217

Query: 444 ETNSAFSKL 452
                FS  
Sbjct: 218 NLQPDFSSK 226

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  112 bits (283), Expect = 7e-29
 Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 40/260 (15%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
             I + +    +  + P  L GIT +  EG  V VVG+ G GK++L+SAL   ++   G 
Sbjct: 2   NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN------LDPLGMYSDNEIWEAME 332
           + I G              ++ +PQ+  +   S+R N      L+    Y        ++
Sbjct: 62  VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEE-PYY-----RSVIQ 102

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID--S 390
            C L   +  LP    + + ++G N S GQ+Q   L R +     I + D      D  S
Sbjct: 103 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD------DPLS 156

Query: 391 ATDA-----ILQRII--REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM 443
           A DA     I + +I  +      T I V H +  +   D+ +V+S G++ E     +L+
Sbjct: 157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL 216

Query: 444 ETNSAFSKLVAEYRSSYKRN 463
             + AF++ +  Y S +  +
Sbjct: 217 ARDGAFAEFLRTYASHHHHH 236

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  106 bits (268), Expect = 2e-26
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 34/240 (14%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +++E+L   Y   T   LKGI    K G    ++G  G GK+TL      +++P +GRIL
Sbjct: 8   LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66

Query: 281 IDGLDICS--MGLKDLRTKLSIIPQEPT--LFRGSVR-------TNLDPLGMYSDNEIW- 328
            D   I     G+  LR  + I+ Q+P   LF  SV         N   + +  ++EI  
Sbjct: 67  FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN---MKL-PEDEIRK 122

Query: 329 ---EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
               A+++  ++    +    L           S GQ++   +  VL+   ++L+LDE T
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDEPT 171

Query: 386 ASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
           A +D    + + +++ E  +  G T+I   H +  +    D   V+  G ++    P ++
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  105 bits (265), Expect = 4e-26
 Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 37/241 (15%)

Query: 221 IELEDLKVRYRPNTPL---VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
           IE+ ++   +   TPL    L+ ++    EG  + V G TGSGK+TL+  +  L+EP +G
Sbjct: 3   IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62

Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPT--LFRGSVRTNLD----PLGMYSDNEIW--- 328
            +L DG         ++R  + I  Q P    F   V    +        Y D +     
Sbjct: 63  DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFD--EVAFAVKNFYPDRDPVPLV 117

Query: 329 -EAMEKCQLKAT--ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
            +AME   L       R+P  L           S G+++   +  V++    IL+LDE  
Sbjct: 118 KKAMEFVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPL 166

Query: 386 ASID-SATDAILQRI--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSK 441
             +D      +L+ +   +    G TVI ++H + T+ +  D  +VL  G+ V      +
Sbjct: 167 VGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224

Query: 442 L 442
            
Sbjct: 225 F 225

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 96.9 bits (242), Expect = 8e-23
 Identities = 50/252 (19%), Positives = 105/252 (41%), Gaps = 34/252 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I+L+ +    +  T  +LK I+    +G +  + G  G+GKTTL++ L       +G + 
Sbjct: 22  IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79

Query: 281 IDGLDICSMG--LKDLRTKLSIIPQEPTL---FRGSVRTNL-----DPLGMY---SDNEI 327
           + G     +G   + +R  +  +             V   +       +G+Y    D   
Sbjct: 80  LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139

Query: 328 WEA---MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384
            EA   ++   + A   +    L           S G++Q   + R L+ + ++L+LDE 
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188

Query: 385 TASID-SATDAILQRI--IREEFPGSTVITVAHRVPTITDS-DMFMVLSYGELVEYDLPS 440
            A +D  A +++L  +  + + +P   +I V H +  IT +    ++L  G+ ++     
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248

Query: 441 KLMETNSAFSKL 452
            ++ T+   S+ 
Sbjct: 249 DIL-TSENMSRF 259

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 38/221 (17%)

Query: 221 IELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           I+L+++ +    +      L+ I      G +V ++G  GSGKTTL+ A+  L+ P +G 
Sbjct: 2   IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG--SVRTN----LDPLGMYSDNEIWEAME 332
           I I+G+++     + +R  +      P  +    +V        +  G+   +   E ++
Sbjct: 60  IFINGMEV-----RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-DRDLFLEMLK 113

Query: 333 KCQLKATIS-RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA 391
             +L   I  R    L           S GQ  L      L  +  I+ LDE   ++D+A
Sbjct: 114 ALKLGEEILRRKLYKL-----------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162

Query: 392 TDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGE 432
              ++ R I+E   G   I V H        ++ M+  Y E
Sbjct: 163 RRHVISRYIKEY--GKEGILVTH--------ELDMLNLYKE 193

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 46/264 (17%), Positives = 84/264 (31%), Gaps = 39/264 (14%)

Query: 196 MHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVG 255
           +    E                          ++       VL      F +   + ++G
Sbjct: 327 LRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF-VLNVEEGEFSDSEILVMMG 385

Query: 256 RTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT--LFRGSVR 313
             G+GKTTLI  L   ++P+ G+ +          +     K++         LF   +R
Sbjct: 386 ENGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTVRQLFFKKIR 439

Query: 314 TNLDPLGMYSDNEIW-EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL 372
                 G + + +   + ++  ++   I +    L           S G+ Q   +   L
Sbjct: 440 ------GQFLNPQFQTDVVKPLRIDDIIDQEVQHL-----------SGGELQRVAIVLAL 482

Query: 373 LKRNRILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSY 430
                I ++DE +A +DS    I  ++IR        T   V H        D  M    
Sbjct: 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH--------DFIMATYL 534

Query: 431 GE--LVEYDLPSKLMETNSAFSKL 452
            +  +V   +PSK     +  S L
Sbjct: 535 ADKVIVFEGIPSKNAHARAPESLL 558

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 85.9 bits (213), Expect = 4e-18
 Identities = 49/258 (18%), Positives = 92/258 (35%), Gaps = 34/258 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI- 279
                +  RY  N+         T + G  +G+VG  G GK+T +  L    +P  GR  
Sbjct: 78  NLEAHVTHRYSANS--FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135

Query: 280 ----------LIDGLDICSMGLKDLRTKLSIIPQ------EPTLFRGSVRTNLDPLGMYS 323
                        G ++ +   K L   +  I +       P   +G V+   + L +  
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL-R 194

Query: 324 DNEIWEAMEKCQLKATISRLPM--LLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381
             +  E +++      I  L +  +L   +       S G+ Q F +G   ++   + + 
Sbjct: 195 MEKSPEDVKR-----YIKILQLENVLKRDIEK----LSGGELQRFAIGMSCVQEADVYMF 245

Query: 382 DEATASIDSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLP 439
           DE ++ +D        +IIR    P   VI V H +  +   SD   ++ YG    Y + 
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII-YGVPSVYGVV 304

Query: 440 SKLMETNSAFSKLVAEYR 457
           +         +  +  + 
Sbjct: 305 TLPASVREGINIFLDGHI 322

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 91.5 bits (228), Expect = 4e-21
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 41/212 (19%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            ++L+D+           L  ++   + G  + +VG  G+GK+TL++ +  +     G I
Sbjct: 4   VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEPTL-FRGSVRTNLDPLGM----YSDNEI-WEAMEK 333
              G  + +     L    + + Q+ T  F   V      L +     +  E+  +    
Sbjct: 57  QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW---HYLTLHQHDKTRTELLNDVAGA 113

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-------KRNRILVLDEATA 386
             L          L  S +      S G+ Q   L  V+L          ++L+LDE   
Sbjct: 114 LALDD-------KLGRSTNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 162

Query: 387 SID----SATDAILQRIIREEFPGSTVITVAH 414
           S+D    SA D IL  + ++   G  ++  +H
Sbjct: 163 SLDVAQQSALDKILSALSQQ---GLAIVMSSH 191

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 95.1 bits (237), Expect = 5e-21
 Identities = 55/269 (20%), Positives = 93/269 (34%), Gaps = 33/269 (12%)

Query: 200 PEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGS 259
                   +            +E   L   Y       L+      ++G  +G+VG  G 
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGI 393

Query: 260 GKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR---TNL 316
           GKTT +  L  + EP  G++  D     ++  K    K          + G+V    + +
Sbjct: 394 GKTTFVKMLAGVEEPTEGKVEWDL----TVAYKPQYIKAE--------YEGTVYELLSKI 441

Query: 317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376
           D   + S+    E ++   +     R    L           S G+ Q   +   LL+  
Sbjct: 442 DSSKLNSNFYKTELLKPLGIIDLYDRNVEDL-----------SGGELQRVAIAATLLRDA 490

Query: 377 RILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
            I +LDE +A +D      + R IR   E    T + V H V  I   SD  +V   GE 
Sbjct: 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEP 549

Query: 434 VEYDLPSKLMETNSAFSKLVAEYRSSYKR 462
             +      M      ++ +A    +++R
Sbjct: 550 GRHGRALPPMGMREGMNRFLASVGITFRR 578

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 86.2 bits (214), Expect = 4e-18
 Identities = 51/230 (22%), Positives = 84/230 (36%), Gaps = 33/230 (14%)

Query: 224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG 283
           ED   RY  N    +       K+G  VG+VG  G+GKTT +  L   + P         
Sbjct: 95  EDCVHRYGVNA--FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152

Query: 284 -LDICSMGLKDLRT--------KLSIIPQE------PTLFRGSVRTNLDPLGMYSDNEIW 328
              I +    +L+         ++  + +       P   +G VR  L            
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK---------V 203

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
           + + K +       L  +LD  +       S G+ Q   +   LL++      DE ++ +
Sbjct: 204 DEVGKFEEVVKELELENVLDREL----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYL 259

Query: 389 DSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436
           D      + R+IR     G  V+ V H +  +   SD+  V+ YGE   Y
Sbjct: 260 DIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV-YGEPGVY 308

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 94.7 bits (236), Expect = 6e-21
 Identities = 58/262 (22%), Positives = 90/262 (34%), Gaps = 33/262 (12%)

Query: 200 PEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGS 259
                   +T           +    L   Y       L+      K+G  +G+VG  G 
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGI 323

Query: 260 GKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR---TNL 316
           GKTT +  L  + EP  G+I  D     ++  K    K          + G+V    + +
Sbjct: 324 GKTTFVKMLAGVEEPTEGKIEWDL----TVAYKPQYIKAD--------YEGTVYELLSKI 371

Query: 317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN 376
           D   + S+    E ++   +     R    L           S G+ Q   +   LL+  
Sbjct: 372 DASKLNSNFYKTELLKPLGIIDLYDREVNEL-----------SGGELQRVAIAATLLRDA 420

Query: 377 RILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
            I +LDE +A +D      + R IR   E    T + V H V  I   SD  MV   GE 
Sbjct: 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEP 479

Query: 434 VEYDLPSKLMETNSAFSKLVAE 455
            +Y      M      ++ +A 
Sbjct: 480 GKYGRALPPMGMREGMNRFLAS 501

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 85.0 bits (211), Expect = 8e-18
 Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 39/238 (16%)

Query: 221 IELEDLKV----RYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE- 275
             +E L+     RY  N    +       KEG  VG+VG  G+GK+T +  L   + P  
Sbjct: 18  SHMEQLEEDCVHRYGVNA--FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75

Query: 276 -----NGRILIDGLDI--CSMGLKDLRT-KLSIIPQE------PTLFRGSVRTNLDPLGM 321
                +   +I            + L+  ++  + +       P   +G V   L     
Sbjct: 76  CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK--- 132

Query: 322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVL 381
                  +   K +       L  +L+  +     + S G+ Q   +   LL+       
Sbjct: 133 ------ADETGKLEEVVKALELENVLEREIQ----HLSGGELQRVAIAAALLRNATFYFF 182

Query: 382 DEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436
           DE ++ +D        R IR   E  G +V+ V H +  +   SD+  V+ YGE   Y
Sbjct: 183 DEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVY 238

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 44/268 (16%), Positives = 89/268 (33%), Gaps = 35/268 (13%)

Query: 193 RQFMHLPPEP--PAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTR 250
            + M + P+     + E +    S     +++   +  +        L       KEG  
Sbjct: 240 AENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEI 296

Query: 251 VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 310
           +G++G  G GKTT    L   +  + G +  +         + L  K   I        G
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEK--------QILSYKPQRIFPNY---DG 345

Query: 311 SVRTNL-DPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF 366
           +V+  L +        S     E  ++  L   +      L           S G+ Q  
Sbjct: 346 TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL-----------SGGELQKL 394

Query: 367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SD 423
            +   L K   + VLD+ ++ +D     I+ + I+       +    + H +      +D
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD 454

Query: 424 MFMVLSYGELVEYDLPSKLMETNSAFSK 451
             +V   GE  +  L +  +   +  ++
Sbjct: 455 RIIVF-KGEPEKAGLATSPVTLKTGMNE 481

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 78.5 bits (194), Expect = 9e-16
 Identities = 45/220 (20%), Positives = 82/220 (37%), Gaps = 22/220 (10%)

Query: 229 RYRPNTPLVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC 287
           RY+ N     K     T K  T +GV+G+ G GKTT++  L   + P  G    +     
Sbjct: 8   RYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGK 62

Query: 288 SMGLKDLR-TKLSIIPQEP-TLFRGSVRT--NLDPLGMYSDNEIWEAMEKCQLKATISR- 342
              LK  R  ++    +E  +     V     ++    +    + E + K   +      
Sbjct: 63  DEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEV 122

Query: 343 -----LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
                +  L +   +      S G  Q   +   LL+   + + D+ ++ +D      + 
Sbjct: 123 KELLNMTNLWNKDAN----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178

Query: 398 RIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEY 436
           + IRE      VI V H +  +   +D+  ++ YGE   Y
Sbjct: 179 KAIRELLKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVY 217

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 87.6 bits (218), Expect = 4e-20
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 29/221 (13%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E+ DL V Y      VL+ IT T ++G  V   G  G GKTTL+  +   ++P  G I+
Sbjct: 11  LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG-MY----SDNEIWEAMEKC 334
            +G+ I       ++ K+  +P+E  + R  SV   L  +  +Y    + NEI +A+E  
Sbjct: 68  YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122

Query: 335 QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID-SATD 393
           ++              +  +    S G  +   L   LL    I VLD+   +ID  +  
Sbjct: 123 EVL------------DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170

Query: 394 AILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELV 434
            +L+ I+        VI  +     ++  D+   L      
Sbjct: 171 KVLKSILEILKEKGIVIISSREE--LSYCDVNENLHKYSTK 209

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 51/214 (23%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           + +E+L   Y+     + + +     +G  + V+G+ G GK+TL+  L  +  P  G+I 
Sbjct: 5   LSVENLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTL-FRGSV-------RT-NLDPLGMYS--DNEI-W 328
           +                +  +PQ  +  F  SV       R+ +++        D ++  
Sbjct: 64  VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110

Query: 329 EAMEKCQLKA----TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384
           +A++   L        + L               S GQRQL  + R +    ++++LDE 
Sbjct: 111 QALDYLNLTHLAKREFTSL---------------SGGQRQLILIARAIASECKLILLDEP 155

Query: 385 TASIDSATD----AILQRIIREEFPGSTVITVAH 414
           T+++D A      ++L  + + +    TV+   H
Sbjct: 156 TSALDLANQDIVLSLLIDLAQSQ--NMTVVFTTH 187

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 82.6 bits (205), Expect = 5e-18
 Identities = 51/245 (20%), Positives = 101/245 (41%), Gaps = 46/245 (18%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           + ++DL+ R       +LKGI+   +EG   G++G  G+GKTT +  +  L++P +G + 
Sbjct: 16  VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLG-MY------SDNEIWEAME 332
           + G ++     + +R  +S +P+E   +R       L  +   Y       +  +  A E
Sbjct: 74  VFGKNVVEEPHE-VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 132

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
              L   I                 +S G  +   + R L+   R+ +LDE T+ +D   
Sbjct: 133 IAGLGEKIKDRV-----------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181

Query: 393 DAILQRIIRE---EFPGSTVI----------TVAHRVPTITDSDMFMVLSYGELVEYDLP 439
              +++I+++   E  G T++           +  R+          ++  G +VE    
Sbjct: 182 AREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRI---------ALIHNGTIVETGTV 230

Query: 440 SKLME 444
            +L E
Sbjct: 231 EELKE 235

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 80.8 bits (200), Expect = 8e-17
 Identities = 64/258 (24%), Positives = 114/258 (44%), Gaps = 35/258 (13%)

Query: 197 HLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLV--LKGITCTFKEGTRVGVV 254
           H                       I+L ++   +   T  +  L  ++     G   GV+
Sbjct: 3   HHHHHHHHHHSSGHIDDDDKHM--IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVI 60

Query: 255 GRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGS 311
           G +G+GK+TLI  +  L  P  G +L+DG ++ ++   +L     ++ +I Q   L   S
Sbjct: 61  GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL--S 118

Query: 312 VRTNLD----PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENW----SVGQR 363
            RT       PL      E+     K ++K  ++ L  L+   + D+ +++    S GQ+
Sbjct: 119 SRTVFGNVALPL------ELD-NTPKDEVKRRVTELLSLVG--LGDKHDSYPSNLSGGQK 169

Query: 364 QLFCLGRVLLKRNRILVLDEATASIDSA-TDAILQ--RIIREEFPGSTVITVAHR---VP 417
           Q   + R L    ++L+ D+AT+++D A T +IL+  + I     G T++ + H    V 
Sbjct: 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVK 228

Query: 418 TITDSDMFMVLSYGELVE 435
            I D     V+S GEL+E
Sbjct: 229 RICDC--VAVISNGELIE 244

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 69.8 bits (172), Expect = 9e-14
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 24/172 (13%)

Query: 222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI 281
           E++ L V Y       +KGI      G  V ++G  G+GKTT +SA+  LV  + G+I+ 
Sbjct: 8   EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65

Query: 282 DGLDICSMGLKDL-RTKLSIIPQEPTLFRG-SVRTNLDPLGMY---SDNEIWEAMEKC-- 334
           +G DI +     + R  ++++P+   +F   +V  NL  +G Y       I   +E    
Sbjct: 66  NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLM-MGAYNRKDKEGIKRDLEWIFS 124

Query: 335 ---QLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDE 383
              +LK  + +L   L           S G++Q+  +GR L+ R ++L++DE
Sbjct: 125 LFPRLKERLKQLGGTL-----------SGGEQQMLAIGRALMSRPKLLMMDE 165

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 208 ETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISA 267
               P        I++  LK  +      VLKGI    +EG  V V+G +GSGK+T +  
Sbjct: 12  SGLVPRGSHMLQMIDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRC 69

Query: 268 LFRLVEPENGRILIDGLDICSMG--LKDLRTKLSIIPQEPTLF 308
           L  L + + G I+IDG+++ +    L  +R ++ ++ Q   LF
Sbjct: 70  LNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 57.9 bits (141), Expect = 7e-10
 Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 34/211 (16%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +  E++K   R     +LKGI+ + K+G  V ++G +GSGK+TL+  L  L  P  G++ 
Sbjct: 5   LRAENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62

Query: 281 IDGLDICSMGLKDL----RTKLSIIPQEPTLF-RGSVRTNLD-PLGMYSDNEI------- 327
           ++G ++     K+L      KL  + Q   L    +   N+  P+ +             
Sbjct: 63  LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM-LKMGKPKKEAKERG 121

Query: 328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
              + +  L   +SR P  L           S G++Q   + R L     +L  DE T +
Sbjct: 122 EYLLSELGLGDKLSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGN 170

Query: 388 IDSATD----AILQRIIREEFPGSTVITVAH 414
           +DSA       I  +I      G++++ V H
Sbjct: 171 LDSANTKRVMDIFLKINEG---GTSIVMVTH 198

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 58.3 bits (142), Expect = 9e-10
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           + + DL  RY  +   VLKG++   + G  + ++G +GSGK+T +  +  L +P  G I+
Sbjct: 7   LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64

Query: 281 IDGLDICSMGLKDLRTK 297
           ++G +I  +  KD + K
Sbjct: 65  VNGQNINLVRDKDGQLK 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 67/418 (16%), Positives = 143/418 (34%), Gaps = 121/418 (28%)

Query: 85  ETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAAL 144
           ET +     +   ++ +F + ++   D         +  ++  +  I   ++ +  T  L
Sbjct: 10  ETGEHQYQYK--DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 145 LIVLL--PGKHLPGFVG--LSLSYALTLSSIQV------IMTRWYC----NLSNNIV--- 187
              LL    + +  FV   L ++Y   +S I+       +MTR Y      L N+     
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 188 --SVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTF 245
             +V R++ ++ L                     R  L +L    RP             
Sbjct: 128 KYNVSRLQPYLKL---------------------RQALLEL----RPAK----------- 151

Query: 246 KEGTRVGVVGRTGSGKTTL-ISAL--FRLVEPENGRIL-IDGLDICSMGLKDLRTKLSII 301
                V + G  GSGKT + +     +++    + +I  +      ++   +   +  + 
Sbjct: 152 ----NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------NLKNCN-SPETVLE 200

Query: 302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPML---------LDSSVS 352
             +  L++  +  N      +S N     +    ++A + RL            L  +V 
Sbjct: 201 MLQKLLYQ--IDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKSKPYENCLLVLL-NVQ 254

Query: 353 DEGENWSVGQRQLF---CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTV 409
           +  + W       F   C         +IL+    T      TD +           +T 
Sbjct: 255 NA-KAW-----NAFNLSC---------KILL----TTRFKQVTDFL-------SAATTTH 288

Query: 410 ITVAHRVPTITDSDMFMVLS-YGELVEYDLPSKLMETN----SAFSKLVAEYRSSYKR 462
           I++ H   T+T  ++  +L  Y +    DLP +++ TN    S  ++ + +  +++  
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 33/214 (15%)

Query: 255 GRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVR 313
           G TG+GK+  +  +  +V+P+ G + ++G DI    L   R  +  +PQ+  LF   SV 
Sbjct: 31  GPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIGFVPQDYALFPHLSVY 88

Query: 314 TNLD-PLGMYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL 368
            N+   L      E      E  EK  +   + R P  L           S G+RQ   L
Sbjct: 89  RNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----------SGGERQRVAL 137

Query: 369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP------GSTVITVAH-RVPTITD 421
            R L+ + R+L+LDE      SA D   + ++ EE           ++ V H  +     
Sbjct: 138 ARALVIQPRLLLLDEPL----SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193

Query: 422 SDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455
           +D   V+  G +VE     +L    +     VAE
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNGE---VAE 224

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 27/212 (12%)

Query: 221 IELEDLKVRYR--PNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           ++L+++   Y+        LK +    KEG  V ++G +GSGK+T+++ +  L +P  G 
Sbjct: 2   VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 279 ILIDGLDICSMGLKDL----RTKLSIIPQEPTLF-RGSVRTNLD-PLGMYSDNEIWEAME 332
           + ID +    +   +L    R K+  + Q+  L    +   N++ PL ++         E
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL-IFKYRGAMSGEE 120

Query: 333 KCQLKATISRLPMLLDS-SVSDEGENW-----SVGQRQLFCLGRVLLKRNRILVLDEATA 386
           + +      R    L    + +   N      S GQ+Q   + R L     I++ D+ T 
Sbjct: 121 RRK------RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTW 174

Query: 387 SIDSATD----AILQRIIREEFPGSTVITVAH 414
           ++DS T      +L+++  E+  G TV+ V H
Sbjct: 175 ALDSKTGEKIMQLLKKLNEED--GKTVVVVTH 204

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 34/183 (18%)

Query: 237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM-----GL 291
           +L       K   R G+ G  G GK+TL+ A+       +G    +      +     G 
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVYVEHDIDGT 507

Query: 292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV 351
               + L  + +     + +++  L   G        + M    +   IS L        
Sbjct: 508 HSDTSVLDFVFESGVGTKEAIKDKLIEFG------FTDEM----IAMPISAL-------- 549

Query: 352 SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVIT 411
                  S G +    L R +L+   IL+LDE T  +D+   A L   +       T IT
Sbjct: 550 -------SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-TCGI-TSIT 600

Query: 412 VAH 414
           ++H
Sbjct: 601 ISH 603

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
           +++ +++ +Y   +   +  I       +R+ V+G  G+GK+TLI+ L   + P +G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 44/233 (18%)

Query: 236 LVLKGITCTF-------------KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID 282
           L  + I   F              +G    ++G  GSGK+TLI+ +   ++ + GR+  +
Sbjct: 8   LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67

Query: 283 GLDI--------CSMGLKDLRTKLSIIPQEPTLFRG-SVRTN-LDPLGMYSDNEIWEAM- 331
             DI           G+  +RT      Q P   +  +V  N L       ++ +     
Sbjct: 68  NKDITNKEPAELYHYGI--VRTF-----QTPQPLKEMTVLENLLIGEICPGESPLNSLFY 120

Query: 332 ------EKCQLKATISRLPML-LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384
                 E+  ++     L  L L      +    S GQ +L  +GR L+   +++V+DE 
Sbjct: 121 KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180

Query: 385 TASIDSA-TDAILQRI--IREEFPGSTVITVAHRVPTITD-SDMFMVLSYGEL 433
            A +       I   +  ++ +  G T + + HR+  + +  D   V+  G++
Sbjct: 181 IAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQI 231

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 39/214 (18%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
            + +  L   ++     VL  I+ +   G  + ++G +G GKTTL+  L    +P++G I
Sbjct: 4   ALHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61

Query: 280 LIDGLDICSMG--LKDLRTKLSIIPQEPTLFRG-SVRTN----LDPLGMYSDNEIW---- 328
            + G  I S    L     +L  + QE  LF   +V  N    L         +      
Sbjct: 62  SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQRIE 120

Query: 329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASI 388
             +E   +     R P  L           S GQ+Q   L R L     +++LDE     
Sbjct: 121 AMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILLDEPF--- 166

Query: 389 DSATDAIL--------QRIIREEFPGSTVITVAH 414
            SA D  L           +R    G + + V+H
Sbjct: 167 -SALDEQLRRQIREDMIAALRAN--GKSAVFVSH 197

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 32/208 (15%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE   ++  Y       ++G++   +EG  VG++G +GSGKTT++  +  L  P  G + 
Sbjct: 15  IEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLD-PLGM--YSDNEI----WEAME 332
           I G  +  +  +  R  + ++ Q   LF+  +V  N+   L       +E+     E + 
Sbjct: 74  IGGKRVTDLPPQK-R-NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131

Query: 333 KCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT 392
             +L++  +R P  L           S GQ+Q   L R L  R ++L+ DE      +A 
Sbjct: 132 FMRLESYANRFPHEL-----------SGGQQQRVALARALAPRPQVLLFDEPF----AAI 176

Query: 393 DAILQRIIREEFP------GSTVITVAH 414
           D  ++R +R          G T + V H
Sbjct: 177 DTQIRRELRTFVRQVHDEMGVTSVFVTH 204

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 53/251 (21%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
           RI ++++   ++    + L  +    + G R G++G +G+GKTT +  +  L  P  G +
Sbjct: 3   RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEPTLFRG--------------SVRTNLD-PLGM--Y 322
             D   + S G   +       P++    R               +   N+  PL     
Sbjct: 63  YFDDRLVASNGKLIVP------PED----RKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112

Query: 323 SDNEI----WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI 378
           S  EI     E  +   +   ++  P  L           S  Q+Q   L R L+K   +
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKDPSL 161

Query: 379 LVLDEATASIDSATDAILQRIIREEFP------GSTVITVAH-RVPTITDSDMFMVLSYG 431
           L+LDE      S  DA ++   R          G T++ V+H        +D   VL  G
Sbjct: 162 LLLDEPF----SNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG 217

Query: 432 ELVEYDLPSKL 442
           +LV+   P  L
Sbjct: 218 KLVQVGKPEDL 228

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 48/254 (18%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+E L  +++      L  ++   + G    ++G TG+GKT  +  +     P++GRIL
Sbjct: 2   IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLD-PL---GMYSDNEIWEAMEKCQ 335
           +DG D+    L   +  ++ + Q  +LF   +V+ NL+  +    +     + +     +
Sbjct: 59  LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116

Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
           ++  + R P+ L           S G++Q   L R L+   +IL+LDE      SA D  
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPL----SALDPR 161

Query: 396 LQRIIREEFP------GSTVITVAHRVPTITD-------SDMFMVLSYGELVEYDLPSKL 442
            Q   RE           TV+ + H      D       +D   V+  G+L++   P ++
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITH------DQTEARIMADRIAVVMDGKLIQVGKPEEI 215

Query: 443 MET-NSAFSKLVAE 455
            E         VA 
Sbjct: 216 FEKPVEGR---VAS 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	467
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.98
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.98
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.98
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.97
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.95
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.95
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.94
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.93
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.93
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.92
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.91
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.9
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.9
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.89
2og2_A	359	Putative signal recognition particle receptor; nuc	99.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.88
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.88
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.87
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.86
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.86
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.85
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.85
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.85
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.85
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.84
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.84
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.82
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.82
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.82
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.82
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.81
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.81
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.8
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.8
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.79
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.79
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.79
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.78
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.78
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.77
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.77
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.76
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.76
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.75
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.74
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.72
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.71
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.71
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.69
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.69
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.65
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.64
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.63
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.62
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.62
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.61
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.6
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.59
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.57
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.53
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.51
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.5
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.5
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.48
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.48
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.47
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.46
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.46
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.46
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.43
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.42
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.41
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.38
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.34
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.3
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.3
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.28
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.23
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.17
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.17
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.17
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.15
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.14
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.1
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.08
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.06
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.04
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.03
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.02
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.02
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.0
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.98
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.95
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.95
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.94
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.91
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.87
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.82
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.8
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.73
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.69
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.64
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.63
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.63
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.62
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.6
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.59
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.55
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.55
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.54
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.48
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.46
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.39
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.38
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.35
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.35
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.33
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.3
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.22
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.21
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.19
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.18
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.16
3ice_A	422	Transcription termination factor RHO; transcriptio	98.13
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.1
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.05
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.02
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.99
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.94
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.92
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.92
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.89
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.85
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.83
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.83
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.82
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.81
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.78
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.72
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.71
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.71
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.7
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.7
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.66
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.63
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.6
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.58
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.57
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.55
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.55
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.54
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.54
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.51
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.5
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.49
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.47
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.45
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.39
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.36
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.31
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.31
3bos_A	242	Putative DNA replication factor; P-loop containing	97.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.27
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.25
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.24
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.23
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.22
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.22
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.2
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.17
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.16
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.15
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.09
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.07
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.05
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.05
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.05
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.04
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.02
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.98
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.97
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.93
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.86
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.85
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.83
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.76
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.74
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.74
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.73
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.69
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.67
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.65
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.64
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.64
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.63
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.63
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.63
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.62
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.59
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.58
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.58
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.56
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.48
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.48
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.48
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.47
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.47
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.44
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.44
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.43
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.43
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.38
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.35
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.34
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.32
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.3
3co5_A	143	Putative two-component system transcriptional RES	96.28
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.28
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.27
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.27
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.25
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.25
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.19
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.19
1via_A	175	Shikimate kinase; structural genomics, transferase	96.18
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.14
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.13
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.13
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.12
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.1
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.1
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.09
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.08
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.04
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.03
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.03
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.01
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.98
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.95
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.92
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.92
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.9
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.9
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.88
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.85
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.84
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.84
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.83
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.82
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.81
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.8
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.79
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.79
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.79
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.79
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.78
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.78
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.78
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.77
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.76
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.76
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.74
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.73
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.73
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.72
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.7
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.69
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.67
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.67
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.65
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.65
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.64
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.63
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.63
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.63
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.62
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.62
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.61
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.6
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.6
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.58
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.57
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.57
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.57
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.56
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.53
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.52
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.5
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.5
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.48
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.48
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.47
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.46
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.44
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.44
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.43
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.42
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.42
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.42
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.38
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.38
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.37
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.32
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.32
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.31
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.3
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.29
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.28
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.27
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.27
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.27
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.26
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.25
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.25
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.25
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.24
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.24
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.24
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.24
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.23
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.22
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.22
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.22
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.21
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.21
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.21
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.19
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.19
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.16
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.16
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.15
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.15
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.14
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.13
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.11
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.11
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.1
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.07
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.06
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.04
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.04
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.04
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.03
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.03
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.02
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.01
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.01
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.0
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.98
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.98
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.96
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.96
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.95
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.93
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.92
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.92
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.92
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.91
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.91
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.9
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.9
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.85
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.84
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.79
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.79
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.78
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.76
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.76
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.74
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.7
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.68
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.66
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.65
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.64
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	94.64
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.63
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.6
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.58
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.57
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.56
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.48
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.46
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.46
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.45
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.43
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	94.39
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	94.39
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.39
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.39
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.33
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.28
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.2
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.2
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.18
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	94.14
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.04
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.0
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	93.77
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.76
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.74
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	93.58
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	93.56
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	93.51
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	93.47
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	93.46
1wxq_A	397	GTP-binding protein; structural genomics, riken st	93.46
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	93.43
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	93.42
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.32
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.44
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	93.15
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.05
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.03
1tue_A	212	Replication protein E1; helicase, replication, E1E	92.94

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.6e-84  Score=753.45  Aligned_cols=455  Identities=20%  Similarity=0.285  Sum_probs=364.9

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      +||+++|++.++..++..+..++..++.+++.++++++++|++++++++++++.++....+.+..+.......+..++..
T Consensus       856 ~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  935 (1321)
T 4f4c_A          856 STRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSG  935 (1321)
T ss_dssp             HHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHH
T ss_pred             HhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999888777776666555544433333333344556677


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCcc--HH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--LPGKHL--PG  156 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~g  156 (467)
                      .++.|+++|+++||+|+.|+++.++|.+..+...+...+......+...+...+..+...++.++...  ..+..+  .+
T Consensus       936 ~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 1015 (1321)
T 4f4c_A          936 KIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPM 1015 (1321)
T ss_dssp             HHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHH
T ss_pred             HHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchH
Confidence            88999999999999999999999999998888777655544444333333322222222222222211  223333  33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CC
Q 044927          157 FVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TP  235 (467)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~  235 (467)
                      .+...+.+......++..+...+..++.+..+.+|+.++++.+++.+.   ...++..++..+.|+|+||+|+|+++ ..
T Consensus      1016 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~ 1092 (1321)
T 4f4c_A         1016 RVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEI 1092 (1321)
T ss_dssp             HHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCCCCCC
Confidence            333333333333345555667778889999999999999987655332   12222334566789999999999754 34


Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      ++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||+||
T Consensus      1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A         1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred             ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcC---CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927          316 LDPL---GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT  392 (467)
Q Consensus       316 l~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~  392 (467)
                      |.++   ..+++++++++++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|
T Consensus      1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A         1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp             HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred             HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence            9764   3578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927          393 DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS  458 (467)
Q Consensus       393 ~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~  458 (467)
                      |+.|++.|++..+++|+|+||||++++++||||+||++|+|+|.|+|+||++++|.|++|++.+..
T Consensus      1253 E~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A         1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp             HHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred             HHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999987753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1e-82  Score=738.32  Aligned_cols=454  Identities=20%  Similarity=0.274  Sum_probs=394.1

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.+++.+...+..++..++++++.++++++++|+++++++.++++..++...+.+..++..+...+..++..
T Consensus       196 ~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (1321)
T 4f4c_A          196 ATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAG  275 (1321)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999887776666666666666666666666666778888


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       276 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~  355 (1321)
T 4f4c_A          276 KVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDM  355 (1321)
T ss_dssp             HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred             HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            99999999999999999999999999988877766655544444444333333333333332222  1234588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV  237 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~  237 (467)
                      .+++.|...+..|+..+...+..++++.++++|+.++++.+++.+......  ..+.+..+.|+|+||+|+|++. ..++
T Consensus       356 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~I~~~nvsF~Y~~~~~~~v  433 (1321)
T 4f4c_A          356 LTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAG--RKDMKIKGDITVENVHFTYPSRPDVPI  433 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCC--CCCCCCCCCEEEEEEEECCSSSTTSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc--ccCCCCCCcEEEEEeeeeCCCCCCCce
Confidence            999999999999999999999999999999999999998765432211111  1122345689999999999753 4579


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.
T Consensus       434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~  513 (1321)
T 4f4c_A          434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS  513 (1321)
T ss_dssp             EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHH
T ss_pred             eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ++. .+++++++++|+.+++++++..+|+|+||.+||+|.+|||||||||+||||+++||+|||||||||+||+++|+.+
T Consensus       514 ~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i  593 (1321)
T 4f4c_A          514 LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV  593 (1321)
T ss_dssp             TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH
T ss_pred             hhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHH
Confidence            764 5789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      ++.|++..+|+|+|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|+++++.+
T Consensus       594 ~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q  653 (1321)
T 4f4c_A          594 QQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQ  653 (1321)
T ss_dssp             HHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhh
Confidence            999999889999999999999999999999999999999999999999999999999765

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4.2e-81  Score=672.77  Aligned_cols=455  Identities=24%  Similarity=0.335  Sum_probs=387.0

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++...+..++..++.+++.++++++++|+++++++.++++..++..++.+..++..+...+..+++.
T Consensus       123 ~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (587)
T 3qf4_A          123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVN  202 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999998877666666655555555555555555666778899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       203 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~  282 (587)
T 3qf4_A          203 RVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSI  282 (587)
T ss_dssp             HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred             HHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHH
Confidence            99999999999999999999999999888877666555444433333333333333222222222  1234588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .+++.|...+..++..+...+..++++.++++|+.++++.+++.+...   .+....+..+.|+++||+|+|+++.+++|
T Consensus       283 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~---~~~~~~~~~~~i~~~~v~~~y~~~~~~~l  359 (587)
T 3qf4_A          283 MAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD---NALALPNVEGSVSFENVEFRYFENTDPVL  359 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCT---TCBCCSCCCCCEEEEEEEECSSSSSCCSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC---CccccCCCCCcEEEEEEEEEcCCCCCcce
Confidence            999999999989999999999999999999999999998765432111   11111123467999999999976556799


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++|+||||+|++|++|++||+.+
T Consensus       360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~  439 (587)
T 3qf4_A          360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW  439 (587)
T ss_dssp             EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTT
T ss_pred             eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      .. ..++++++++++.+++++++..+|+|++|.++++|.+||||||||++|||||+++|++||||||||+||+++++.++
T Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~  519 (587)
T 3qf4_A          440 GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL  519 (587)
T ss_dssp             TCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence            54 46788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS  458 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~  458 (467)
                      +.+++..+++|+|+||||++++..||||++|++|+|++.|+|+|+++.++.|+++++.+..
T Consensus       520 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~  580 (587)
T 3qf4_A          520 DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFG  580 (587)
T ss_dssp             HHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC-
T ss_pred             HHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHhc
Confidence            9999988899999999999999999999999999999999999999999999999887643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=1.4e-79  Score=661.14  Aligned_cols=452  Identities=20%  Similarity=0.335  Sum_probs=393.3

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++...+..++.+++.+++.++++++++|+++++++.++++.+++...+.+..++..+...+..+++.
T Consensus       125 ~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (582)
T 3b5x_A          125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT  204 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999887776666666666666666666666667778899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       205 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l  284 (582)
T 3b5x_A          205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTF  284 (582)
T ss_pred             HHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999998888777766666666665555555444433333222  1224588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .+++.+...+..|+..+...+..++++..+++|+.++++.+++.+.   ...+  .++..+.++++||+|+|+++.+++|
T Consensus       285 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~i~~~~v~~~y~~~~~~~l  359 (582)
T 3b5x_A          285 TVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GKYE--AERVNGEVDVKDVTFTYQGKEKPAL  359 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CCCC--CCCCCCeEEEEEEEEEcCCCCcccc
Confidence            9999999999999999999999999999999999999987654321   1111  1122457999999999975334699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|+++|||||+|.+|++|++||+.+
T Consensus       360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~  439 (582)
T 3b5x_A          360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAY  439 (582)
T ss_pred             ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          319 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       319 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ..  ..++++++++++.++++++++++|+|+||.+|++|.+||||||||++|||||+++|++||||||||+||+++++.+
T Consensus       440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i  519 (582)
T 3b5x_A          440 AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI  519 (582)
T ss_pred             cCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence            53  4678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYR  457 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~  457 (467)
                      .+.+++..+|+|+|+||||++.++.||||++|++|++++.|+|+|+++.++.|+++++.+.
T Consensus       520 ~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~  580 (582)
T 3b5x_A          520 QAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF  580 (582)
T ss_pred             HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence            9999998779999999999999999999999999999999999999998899999987653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4.3e-81  Score=674.36  Aligned_cols=455  Identities=25%  Similarity=0.346  Sum_probs=394.7

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++..+...+..++.+++.+++.++++++++|+++++++.++++.+++..++.+..++..+...+..+++.
T Consensus       137 ~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (598)
T 3qf4_B          137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLN  216 (598)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999887777777666666777766666666677778899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|++|+.+.++|.+..++..+...+......+......++..+...++.++.  ....|.+++|.+
T Consensus       217 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~  296 (598)
T 3qf4_B          217 GIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTI  296 (598)
T ss_dssp             HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHH
T ss_pred             HHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            999999999999999999999999999888877776665555555554444444443333332222  223488999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .+++.|...+..++..+...+..++++.++++|+.++++.+++.+..   . ....++..+.|+++||+|+|+++ +++|
T Consensus       297 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~-~~~~~~~~~~i~~~~v~~~y~~~-~~~l  371 (598)
T 3qf4_B          297 ATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP---D-AVELREVRGEIEFKNVWFSYDKK-KPVL  371 (598)
T ss_dssp             HHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS---S-CCCCCSCCCCEEEEEEECCSSSS-SCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---C-CCCCCCCCCeEEEEEEEEECCCC-Cccc
Confidence            99988888888999999999999999999999999999876553211   1 11112335679999999999754 4599


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|+++|||||+|++|++||+||+.+
T Consensus       372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~  451 (598)
T 3qf4_B          372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY  451 (598)
T ss_dssp             CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHS
T ss_pred             cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      .. ..++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++||||||||+||+++++.+.
T Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~  531 (598)
T 3qf4_B          452 GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ  531 (598)
T ss_dssp             SSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence            53 46778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHhhh
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRSSY  460 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~~~  460 (467)
                      +.+++..+|+|+|+||||+++++.||||++|++|+|++.|+|+|+++.++.|++++..+....
T Consensus       532 ~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~  594 (598)
T 3qf4_B          532 AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGLV  594 (598)
T ss_dssp             HHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHGGG
T ss_pred             HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhhh
Confidence            999998789999999999999999999999999999999999999999999999998766543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=8.1e-81  Score=669.99  Aligned_cols=452  Identities=23%  Similarity=0.316  Sum_probs=386.8

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++...+..++.+++.++++++++++++|+++++++.++++.+.+...+.+..++..+...+..+++.
T Consensus       121 ~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (578)
T 4a82_A          121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQ  200 (578)
T ss_dssp             HHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999988888888999999999999999999999887666666666666666666666666667778899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALL--IVLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++  .....|.+++|.+
T Consensus       201 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l  280 (578)
T 4a82_A          201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTL  280 (578)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHH
Confidence            99999999999999999999999999988877766655544444444333333333322222222  1223488999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .+++.|...+..|+..+...+..++++..+++|+.++++.+++.+..   .......+..+.++++||+|+|+++.+++|
T Consensus       281 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l  357 (578)
T 4a82_A          281 AAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVSFQYNDNEAPIL  357 (578)
T ss_dssp             HHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEEECSCSSSCCSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEEEEcCCCCCcce
Confidence            99999999999999999999999999999999999999876543211   111111123467999999999976555799


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|+++|||||+|++|++|++||+.+
T Consensus       358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~  437 (578)
T 4a82_A          358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL  437 (578)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGG
T ss_pred             eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          319 LG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       319 ~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      .. ..++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++||||||||+||+++++.+.
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~  517 (578)
T 4a82_A          438 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ  517 (578)
T ss_dssp             GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence            43 46788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927          398 RIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE  455 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~  455 (467)
                      +.+++..+++|+|+||||+++++.||||++|++|+|++.|+|+|+++.++.|+++++.
T Consensus       518 ~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~  575 (578)
T 4a82_A          518 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI  575 (578)
T ss_dssp             HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred             HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence            9999988899999999999999999999999999999999999999998999888753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.1e-79  Score=662.02  Aligned_cols=451  Identities=20%  Similarity=0.284  Sum_probs=392.2

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++.++...+..++.+++.+++.++++++++|+++++++.++++.+++...+.+..++..+...+..+++.
T Consensus       125 ~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (582)
T 3b60_A          125 LSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVT  204 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999998887766666666666666666666666667788899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--LPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......+......++..+...++.++...  ..|.+++|.+
T Consensus       205 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l  284 (582)
T 3b60_A          205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTI  284 (582)
T ss_dssp             HHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHH
T ss_pred             HHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999998888877776666666666655555544443333322221  2378999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCcee
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVL  238 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L  238 (467)
                      .+++.|...+..|+..+...+..++++..+++|+.++++.+++.+.   ...+  .++..+.|+++||+|+|+++.+++|
T Consensus       285 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~i~~~~v~~~y~~~~~~~l  359 (582)
T 3b60_A          285 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GKRV--IDRATGDLEFRNVTFTYPGREVPAL  359 (582)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CCBC--CSCCCCCEEEEEEEECSSSSSCCSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CCCC--CCCCCCcEEEEEEEEEcCCCCCccc
Confidence            9999999999999999999999999999999999999987654321   1111  1122457999999999974324699


Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCc
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDP  318 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~  318 (467)
                      +|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++++||||+|.+|++|++||+.+
T Consensus       360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~  439 (582)
T 3b60_A          360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY  439 (582)
T ss_dssp             EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHT
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          319 LG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       319 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ..  ..++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++||||||||+||+++++.+
T Consensus       440 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i  519 (582)
T 3b60_A          440 ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI  519 (582)
T ss_dssp             TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence            53  4678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      .+.+++..+|+|+|+||||++.++.||||++|++|++++.|+|+|+++.++.|+++++.+
T Consensus       520 ~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q  579 (582)
T 3b60_A          520 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ  579 (582)
T ss_dssp             HHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred             HHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence            999998777999999999999999999999999999999999999999889999988754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=2.3e-76  Score=683.69  Aligned_cols=454  Identities=22%  Similarity=0.287  Sum_probs=384.1

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++..++..+..++.+++++++.++++++++|++++++++++++.+++..++.+..++..+...+..++..
T Consensus       168 ~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (1284)
T 3g5u_A          168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAG  247 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999888877777777766777766666666677788899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~  158 (467)
                      +++.|+++|+++||+|+.|+++.++|.+..++..+...+.............++..+...++.++.  ....|.+++|.+
T Consensus       248 ~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~  327 (1284)
T 3g5u_A          248 AVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV  327 (1284)
T ss_dssp             HTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCH
T ss_pred             HHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            999999999999999999999999999888877665544433333333333333322222222221  123477788877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV  237 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~  237 (467)
                      .+++.+......++..+...+..++.+.++++|+.++++.+++.+........+  .+..+.|+++||+|+|+++ ..++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~~~y~~~~~~~v  405 (1284)
T 3g5u_A          328 LTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEFKNIHFSYPSRKEVQI  405 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC--TTCCCCEEEEEEEECCSSTTSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCC--CCCCCeEEEEEEEEEcCCCCCCcc
Confidence            666666666667777788888899999999999999998655432111111111  1235689999999999753 3469


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+.+++.+++|++||||||+|++|++||+|||.
T Consensus       406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~  485 (1284)
T 3g5u_A          406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR  485 (1284)
T ss_dssp             EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHH
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          318 PLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       318 ~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ++. ..++++++++++.+++++++.++|+|++|.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+
T Consensus       486 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i  565 (1284)
T 3g5u_A          486 YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV  565 (1284)
T ss_dssp             HHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence            643 5788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      ++.+++..+|+|+|+||||++++..||+|+||++|+|++.|+|+|+++.++.|.+++..+
T Consensus       566 ~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~  625 (1284)
T 3g5u_A          566 QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQ  625 (1284)
T ss_dssp             HHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHh
Confidence            999998878999999999999999999999999999999999999999999999887644

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=4.2e-73  Score=656.49  Aligned_cols=456  Identities=20%  Similarity=0.270  Sum_probs=365.8

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.++..++..+..++..++.+++.++++++++|+++++++.++++.+++...+.+..+.......+..+...
T Consensus       811 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  890 (1284)
T 3g5u_A          811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG  890 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999988776555555444333333333333333333445566


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--LPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~  158 (467)
                      ..+.|+++|+++||+|+.|+++.++|.+..+...+...+......+.......+..+...++.++...  ..+.++.+.+
T Consensus       891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~  970 (1284)
T 3g5u_A          891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV  970 (1284)
T ss_dssp             HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence            78999999999999999999999999888877655544433332222222222222222222222111  1256676666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCC-CCce
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPN-TPLV  237 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~~~  237 (467)
                      ..++.+......++..+......++.+..+.+|+.++++.+++........  ..+++..+.++++||+|+|++. ..++
T Consensus       971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~i~~~~v~~~y~~~~~~~~ 1048 (1284)
T 3g5u_A          971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQG--LKPNMLEGNVQFSGVVFNYPTRPSIPV 1048 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSC--CCTTTTSCCEEEEEEEBCCSCGGGCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc--ccccCCCCcEEEEEEEEECCCCCCCee
Confidence            666555555555555555556667888999999999998765432211111  1112335689999999999743 2359


Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      |+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||+|.+|++||+||+.
T Consensus      1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~ 1128 (1284)
T 3g5u_A         1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128 (1284)
T ss_dssp             BSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHT
T ss_pred             ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927          318 PLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA  394 (467)
Q Consensus       318 ~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~  394 (467)
                      +..   ..++++++++++.+++++++.++|+||||.+|++|.+||||||||++|||||+++|+|||||||||+||+++++
T Consensus      1129 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~ 1208 (1284)
T 3g5u_A         1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208 (1284)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            643   35788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927          395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS  458 (467)
Q Consensus       395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~  458 (467)
                      .+++.|++..+|+|+|+||||++++..||||+||++|+|++.|+|+|+++.+|.|++|++.+..
T Consensus      1209 ~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A         1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp             HHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence            9999999988899999999999999999999999999999999999999999999999987643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=6.7e-68  Score=523.91  Aligned_cols=278  Identities=24%  Similarity=0.411  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcC
Q 044927          177 RWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGR  256 (467)
Q Consensus       177 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~  256 (467)
                      .++..++.+.++++|++++++.+++......   .....+..+.|+++||+|+|+++ .++|+|+||+|++||++||+||
T Consensus        13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~---~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~   88 (306)
T 3nh6_A           13 GLVPRGSHMFIDMENMFDLLKEETEVKDLPG---AGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGP   88 (306)
T ss_dssp             ------CCTTCCHHHHHHHHHHHHSCCCCTT---CBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESS
T ss_pred             ccchhHHHHHHHHHHHHHHHhCCcccccccc---ccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECC
Confidence            3456778889999999999875433211111   01111234579999999999744 4699999999999999999999


Q ss_pred             CCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcC
Q 044927          257 TGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQ  335 (467)
Q Consensus       257 sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~  335 (467)
                      ||||||||+++|+|+++|++|+|.+||+++..++..++|++||||||+|.+|++||+|||.+.. ..++++++++++.++
T Consensus        89 sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~  168 (306)
T 3nh6_A           89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG  168 (306)
T ss_dssp             SCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999998654 467888999999999


Q ss_pred             hHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccC
Q 044927          336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR  415 (467)
Q Consensus       336 l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~  415 (467)
                      +.+++..+|.|++|.++++|.+||||||||++|||||+++|+|||||||||+||+.++..+++.|++..+++|+|+||||
T Consensus       169 l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~  248 (306)
T 3nh6_A          169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR  248 (306)
T ss_dssp             CHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred             cHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998778999999999


Q ss_pred             hhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHHHh
Q 044927          416 VPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEYRS  458 (467)
Q Consensus       416 l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~~~  458 (467)
                      ++++..||||++|++|+|++.|+|+++++.++.|+++++.+..
T Consensus       249 l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~  291 (306)
T 3nh6_A          249 LSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG  291 (306)
T ss_dssp             HHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred             hHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999987754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=7.6e-59  Score=447.38  Aligned_cols=237  Identities=31%  Similarity=0.527  Sum_probs=219.0

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|
T Consensus         6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i   85 (247)
T 2ff7_A            6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   85 (247)
T ss_dssp             EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence            46999999999943234699999999999999999999999999999999999999999999999999988888888999


Q ss_pred             EEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          299 SIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       299 ~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      |||||+|.+|+.|++||+.+.. ..+++++.++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus        86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~  165 (247)
T 2ff7_A           86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  165 (247)
T ss_dssp             EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999899999997643 345677889999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHHH
Q 044927          378 ILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAE  455 (467)
Q Consensus       378 iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~  455 (467)
                      +|||||||++||+.++..+.+.|++..+++|+|+|||+++.+..|||+++|++|++++.|+++++.+. .+.|.+++..
T Consensus       166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~  244 (247)
T 2ff7_A          166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL  244 (247)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence            99999999999999999999999987668999999999999888999999999999999999999876 7788877654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=3.2e-57  Score=439.28  Aligned_cols=237  Identities=31%  Similarity=0.498  Sum_probs=217.9

Q ss_pred             ccEEEEeEEEEeCCCC-CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          219 GRIELEDLKVRYRPNT-PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~-~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      +.|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...+|++
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~   94 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI   94 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence            3599999999996432 3599999999999999999999999999999999999987 8999999999988888888999


Q ss_pred             cEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      |+||||+|.+|+.|++||+.+.. ...++++.++++.+++.+++..+|+++++.+++.+.+||||||||++|||||+++|
T Consensus        95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  174 (260)
T 2ghi_A           95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP  174 (260)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999997542 24567788899999999999999999999999999999999999999999999999


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          377 RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      ++|||||||++||+.++..+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++..+.|.+++...
T Consensus       175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  254 (260)
T 2ghi_A          175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ  254 (260)
T ss_dssp             SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence            99999999999999999999999999877899999999999988899999999999999999999988778888877655

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=2.7e-57  Score=442.28  Aligned_cols=239  Identities=28%  Similarity=0.448  Sum_probs=216.1

Q ss_pred             ccEEEEeEEEEeCC-CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          219 GRIELEDLKVRYRP-NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       219 ~~i~~~~vs~~y~~-~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      +.|+++||+|+|++ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   94 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ   94 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence            46999999999964 12459999999999999999999999999999999999999999999999999988777788889


Q ss_pred             cEEEcCCCccccccHHHhcCcCC-CCCH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPLG-MYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~~-~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |+||||++.+|+.|++||+.+.. .... +++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++
T Consensus        95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~  174 (271)
T 2ixe_A           95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK  174 (271)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred             EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999997643 2333 566777888899999999999999999999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV  453 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~  453 (467)
                      |++|||||||++||+.++..+.+.|++..+  ++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|.+++
T Consensus       175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~  254 (271)
T 2ixe_A          175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV  254 (271)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence            999999999999999999999999998753  899999999999988899999999999999999999998778888887


Q ss_pred             HHHH
Q 044927          454 AEYR  457 (467)
Q Consensus       454 ~~~~  457 (467)
                      +...
T Consensus       255 ~~~~  258 (271)
T 2ixe_A          255 EALA  258 (271)
T ss_dssp             HC--
T ss_pred             HHhh
Confidence            6553

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3.4e-58  Score=442.17  Aligned_cols=233  Identities=28%  Similarity=0.544  Sum_probs=213.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++|
T Consensus         2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (243)
T 1mv5_A            2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (243)
T ss_dssp             EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence            7899999999533 459999999999999999999999999999999999999999999999999988777778889999


Q ss_pred             EcCCCccccccHHHhcCcC-C-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          301 IPQEPTLFRGSVRTNLDPL-G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~-~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      |||++.+|+.|++||+.+. . ...++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus        81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l  160 (243)
T 1mv5_A           81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (243)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence            9999999999999999864 2 3456778899999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHH
Q 044927          379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA  454 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~  454 (467)
                      |||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..+.|.+++.
T Consensus       161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  236 (243)
T 1mv5_A          161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS  236 (243)
T ss_dssp             EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHH
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHH
Confidence            9999999999999999999999886678999999999998888999999999999999999999876666665554

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-56  Score=454.83  Aligned_cols=231  Identities=37%  Similarity=0.672  Sum_probs=216.5

Q ss_pred             CCCcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH
Q 044927          215 WPSHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL  294 (467)
Q Consensus       215 ~~~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~  294 (467)
                      |+..+.|+++||+|+|+++...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++..++...+
T Consensus        14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~   92 (390)
T 3gd7_A           14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW   92 (390)
T ss_dssp             SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred             CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence            44556799999999996444569999999999999999999999999999999999998 89999999999999999999


Q ss_pred             hcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          295 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      |+.+|||||++.+|+.|++||+.+.....+++++++++.+++.+++++.|.++++.+++.+.+||||||||++|||||++
T Consensus        93 rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~  172 (390)
T 3gd7_A           93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS  172 (390)
T ss_dssp             HHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred             hCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999998655567888999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccC
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      +|++||||||||+||+.++..+++.|++...++|+|+|||+++.+..||||++|++|+|++.|+|+++....
T Consensus       173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p  244 (390)
T 3gd7_A          173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP  244 (390)
T ss_dssp             TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            999999999999999999999999999877789999999999988889999999999999999999998743

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=9e-55  Score=414.58  Aligned_cols=221  Identities=24%  Similarity=0.357  Sum_probs=197.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      +.|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             ++
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i   71 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI   71 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence            46999999999964344699999999999999999999999999999999999999999999998             49


Q ss_pred             EEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       299 ~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      +|+||+|.+|+.|++||+.+.....+....++++.+++.+++..+|.+.++.+++.+.+||||||||++|||||+++|++
T Consensus        72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l  151 (229)
T 2pze_A           72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL  151 (229)
T ss_dssp             EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred             EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999976433444556677888899999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHH-HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHH
Q 044927          379 LVLDEATASIDSATDAILQRII-REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKL  452 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l  452 (467)
                      |||||||++||+.+++.+.+.+ ++..+++|+|++||+++.+..||++++|++|++++.|+++++.+..+.|.++
T Consensus       152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~  226 (229)
T 2pze_A          152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK  226 (229)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHH
T ss_pred             EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence            9999999999999999999874 5555589999999999998889999999999999999999998765555544

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=4.3e-55  Score=418.79  Aligned_cols=226  Identities=25%  Similarity=0.417  Sum_probs=203.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||+|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +++
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~   69 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA   69 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence            4899999999964334699999999999999999999999999999999999999999999998             499


Q ss_pred             EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      ||||+|.+|..|++||+.+.....++...++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|++|
T Consensus        70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll  149 (237)
T 2cbz_A           70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY  149 (237)
T ss_dssp             EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred             EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999998888999999764433444566777888888888888999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHH---HHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          380 VLDEATASIDSATDAILQRIIR---EEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      ||||||++||+.++..+.+.+.   +..+++|+|++||+++.+..||++++|++|++++.|+++++.+..+.|.+++..+
T Consensus       150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  229 (237)
T 2cbz_A          150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY  229 (237)
T ss_dssp             EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHT
T ss_pred             EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHHHH
Confidence            9999999999999999999984   3445899999999999888899999999999999999999998888888887766


Q ss_pred             Hh
Q 044927          457 RS  458 (467)
Q Consensus       457 ~~  458 (467)
                      ++
T Consensus       230 ~~  231 (237)
T 2cbz_A          230 AS  231 (237)
T ss_dssp             CC
T ss_pred             Hh
Confidence            54

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=4.3e-54  Score=419.79  Aligned_cols=215  Identities=25%  Similarity=0.427  Sum_probs=183.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~  297 (467)
                      .|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.  ..+...+|++
T Consensus         7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   85 (275)
T 3gfo_A            7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES   85 (275)
T ss_dssp             EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred             EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence            59999999999643 35999999999999999999999999999999999999999999999999984  2234567889


Q ss_pred             cEEEcCCC--ccccccHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          298 LSIIPQEP--TLFRGSVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       298 i~~v~Q~~--~lf~~tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      ||||||+|  .+|..||+||+.+.   ...+.    +++.++++.+++.+..+           ....+||||||||++|
T Consensus        86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~i  154 (275)
T 3gfo_A           86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI  154 (275)
T ss_dssp             EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHH
T ss_pred             EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHHH
Confidence            99999998  46778999999642   12233    23555666666654333           3347899999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||||+.+|++|||||||++||+.++..+.+.|+++.  +|+|+|+|||+++.+.. ||||++|++|++++.|+++++++.
T Consensus       155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  234 (275)
T 3gfo_A          155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  234 (275)
T ss_dssp             HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred             HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            999999999999999999999999999999998864  38999999999999875 999999999999999999999864


Q ss_pred             C
Q 044927          446 N  446 (467)
Q Consensus       446 ~  446 (467)
                      .
T Consensus       235 ~  235 (275)
T 3gfo_A          235 K  235 (275)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1e-53  Score=429.90  Aligned_cols=216  Identities=25%  Similarity=0.399  Sum_probs=187.7

Q ss_pred             ccEEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---
Q 044927          219 GRIELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---  293 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---  293 (467)
                      ..|+++||+++|+.+  ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..++..+   
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~  102 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK  102 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            469999999999643  235899999999999999999999999999999999999999999999999999888665   


Q ss_pred             HhcccEEEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          294 LRTKLSIIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      +|++||||||++.+|+. ||+||+.+.   ...+.    +++.++++.+++.+..++           ...+||||||||
T Consensus       103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~-----------~~~~LSGGqkQR  171 (366)
T 3tui_C          103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQR  171 (366)
T ss_dssp             HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-----------CTTTSCHHHHHH
T ss_pred             HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHH
Confidence            47889999999998875 999999642   12232    345566666666554444           347899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhH
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ++|||||+.+|++||||||||+||+.++..+++.|+++.  .|+|+|+|||+++.+.. ||||++|++|+|++.|+++++
T Consensus       172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev  251 (366)
T 3tui_C          172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV  251 (366)
T ss_dssp             HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999999999999999999999999999999999863  38999999999999875 999999999999999999999


Q ss_pred             hcc
Q 044927          443 MET  445 (467)
Q Consensus       443 ~~~  445 (467)
                      ++.
T Consensus       252 ~~~  254 (366)
T 3tui_C          252 FSH  254 (366)
T ss_dssp             HSS
T ss_pred             HhC
Confidence            864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=1.4e-53  Score=407.80  Aligned_cols=213  Identities=23%  Similarity=0.373  Sum_probs=178.4

Q ss_pred             EEEEeEEEEeCCCC--CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----
Q 044927          221 IELEDLKVRYRPNT--PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----  294 (467)
Q Consensus       221 i~~~~vs~~y~~~~--~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~----  294 (467)
                      |+++||+|+|+++.  .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..++    
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence            78999999996432  358999999999999999999999999999999999999999999999999998887654    


Q ss_pred             hcccEEEcCCCccccc-cHHHhcCcC------CCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          295 RTKLSIIPQEPTLFRG-SVRTNLDPL------GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~~-tv~enl~~~------~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      |+++|||||+|.+|+. |++||+.+.      ...+.+    ++.++++.+++.+..          ......+||||||
T Consensus        82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~  151 (235)
T 3tif_A           82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ  151 (235)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred             hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence            4569999999999876 999999531      122222    334455555443211          1344578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~  441 (467)
                      ||++|||||+.+|++|||||||++||+.++..+.+.++++. + |+|+|+|||+++.+..||||++|++|+|++.++.++
T Consensus       152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~  231 (235)
T 3tif_A          152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG  231 (235)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence            99999999999999999999999999999999999998864 3 899999999999877799999999999999998877


Q ss_pred             Hh
Q 044927          442 LM  443 (467)
Q Consensus       442 l~  443 (467)
                      +.
T Consensus       232 ~~  233 (235)
T 3tif_A          232 FD  233 (235)
T ss_dssp             --
T ss_pred             hc
Confidence            53

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=4.5e-52  Score=398.67  Aligned_cols=217  Identities=25%  Similarity=0.404  Sum_probs=182.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL-RTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~-r~~i  298 (467)
                      .++++||+++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+++
T Consensus         6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   83 (240)
T 1ji0_A            6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence            5899999999964  459999999999999999999999999999999999999999999999999988776654 4569


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      +||||++.+|+. |++||+.+..  ....++..+.+     .+.++.++ |++...+....+||||||||++|||||+++
T Consensus        84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~  157 (240)
T 1ji0_A           84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR  157 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred             EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            999999999887 9999996532  11222222211     12333332 344445556789999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |++|||||||++||+.+++.+.+.|++.. +|+|+|++||+++.+. .|||+++|++|++++.|+++++.+
T Consensus       158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            99999999999999999999999998864 5899999999998875 599999999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=2.2e-52  Score=406.32  Aligned_cols=213  Identities=24%  Similarity=0.322  Sum_probs=186.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++  .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.+.+++.++
T Consensus        11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~   88 (266)
T 4g1u_C           11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA   88 (266)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred             eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence            5999999999963  45999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             EEcCCCcc-ccccHHHhcCcCCC-----CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          300 IIPQEPTL-FRGSVRTNLDPLGM-----YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       300 ~v~Q~~~l-f~~tv~enl~~~~~-----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      |++|++.+ |..|++||+.+...     ...+++.++++.+++.+..++           ...+||||||||++|||||+
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL~  157 (266)
T 4g1u_C           89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVLA  157 (266)
T ss_dssp             EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHHH
T ss_pred             EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHHh
Confidence            99999987 56799999964321     123456667777766443332           33679999999999999999


Q ss_pred             C------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          374 K------RNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       374 ~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +      +|++|||||||+|||+.++..+.+.|+++. + ++|+|+|||+++.+.. ||||++|++|++++.|+++++++
T Consensus       158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~  237 (266)
T 4g1u_C          158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN  237 (266)
T ss_dssp             HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred             cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence            9      999999999999999999999999998864 3 5799999999999875 99999999999999999999975


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       238 ~  238 (266)
T 4g1u_C          238 A  238 (266)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=4e-52  Score=403.56  Aligned_cols=213  Identities=26%  Similarity=0.433  Sum_probs=183.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~  297 (467)
                      .|+++||+++|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  ..+...+|++
T Consensus        24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~  101 (263)
T 2olj_A           24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE  101 (263)
T ss_dssp             SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred             eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence            5999999999953  35999999999999999999999999999999999999999999999999985  3344567888


Q ss_pred             cEEEcCCCccccc-cHHHhcCcC----CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPL----GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      +|||||++.+|+. |++||+.+.    ...+.    +++.++++.+++.+..           .....+||||||||++|
T Consensus       102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~l  170 (263)
T 2olj_A          102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRVAI  170 (263)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHHH
T ss_pred             EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHH
Confidence            9999999998876 999999642    11222    2345556666554433           33447899999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. |||+++|++|++++.|+++++.+.
T Consensus       171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  249 (263)
T 2olj_A          171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR  249 (263)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999999998863 48999999999999875 999999999999999999999764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=6.1e-52  Score=416.74  Aligned_cols=214  Identities=23%  Similarity=0.337  Sum_probs=183.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC--CHHHHhcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM--GLKDLRTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~  297 (467)
                      .|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.  .....+++
T Consensus         4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~   81 (359)
T 3fvq_A            4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR   81 (359)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred             EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence            4899999999963  4599999999999999999999999999999999999999999999999998321  22345678


Q ss_pred             cEEEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          298 LSIIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       298 i~~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                      ||||||++.+|+. ||+||+.+...   ..    .+++.++++.+++.++.++.|           .+||||||||++||
T Consensus        82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRValA  150 (359)
T 3fvq_A           82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAALA  150 (359)
T ss_dssp             CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred             EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHH
Confidence            9999999999975 99999975321   12    234566777777765555544           78999999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |||+.+|++||||||||+||+.++..+++.+.+.  ..|+|+|+|||+++.+.. ||||++|++|+|++.|+++++....
T Consensus       151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p  230 (359)
T 3fvq_A          151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP  230 (359)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence            9999999999999999999999999998877664  248999999999998865 9999999999999999999998643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.3e-51  Score=400.37  Aligned_cols=213  Identities=25%  Similarity=0.408  Sum_probs=184.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----------C
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS----------M  289 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~----------~  289 (467)
                      .|+++||+++|++  .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..          +
T Consensus         6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   83 (262)
T 1b0u_A            6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   83 (262)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence            4999999999953  359999999999999999999999999999999999999999999999999861          3


Q ss_pred             CH---HHHhcccEEEcCCCccccc-cHHHhcCcCC----CCC----HHHHHHHHHHcChHHH-HHhCCCcccccccCCCC
Q 044927          290 GL---KDLRTKLSIIPQEPTLFRG-SVRTNLDPLG----MYS----DNEIWEAMEKCQLKAT-ISRLPMLLDSSVSDEGE  356 (467)
Q Consensus       290 ~~---~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~----~~~----~~~~~~~~~~~~l~~~-i~~l~~g~~t~v~~~g~  356 (467)
                      +.   ..+|+++|||||++.+|+. |++||+.+..    ..+    .+++.++++.+++.+. .++.|           .
T Consensus        84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~  152 (262)
T 1b0u_A           84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V  152 (262)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred             ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc-----------c
Confidence            33   3467789999999998876 9999996421    122    2345667777777666 54443           6


Q ss_pred             CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927          357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELV  434 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv  434 (467)
                      +||||||||++|||||+.+|++|||||||++||+.++..+.+.|++.. +|+|+|+|||+++.+.. ||||++|++|+++
T Consensus       153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~  232 (262)
T 1b0u_A          153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE  232 (262)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            899999999999999999999999999999999999999999998863 48999999999999874 9999999999999


Q ss_pred             EecChhhHhcc
Q 044927          435 EYDLPSKLMET  445 (467)
Q Consensus       435 ~~g~~~~l~~~  445 (467)
                      +.|+++++.+.
T Consensus       233 ~~g~~~~~~~~  243 (262)
T 1b0u_A          233 EEGDPEQVFGN  243 (262)
T ss_dssp             EEECHHHHHHS
T ss_pred             EeCCHHHHHhC
Confidence            99999999764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.7e-51  Score=397.74  Aligned_cols=212  Identities=25%  Similarity=0.420  Sum_probs=184.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      +.|+++||+++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++
T Consensus        14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i   90 (256)
T 1vpl_A           14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI   90 (256)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred             CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence            46999999999953  459999999999999999999999999999999999999999999999999876 456678899


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |||||++.+|+. |++||+.+..   ..+.    +++.++++.+++.+..+           ....+||||||||++|||
T Consensus        91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lAr  159 (256)
T 1vpl_A           91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIAR  159 (256)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHH
T ss_pred             EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHHH
Confidence            999999998876 9999996421   1222    23455666666554333           334789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  235 (256)
T 1vpl_A          160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  235 (256)
T ss_dssp             HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence            9999999999999999999999999999998864 58999999999999886 99999999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=9.2e-52  Score=400.51  Aligned_cols=209  Identities=20%  Similarity=0.295  Sum_probs=178.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLK-DLRTKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i  298 (467)
                      .++++||+++|++  .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .+|+++
T Consensus         7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   84 (257)
T 1g6h_A            7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI   84 (257)
T ss_dssp             EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            5999999999963  3599999999999999999999999999999999999999999999999999876643 457789


Q ss_pred             EEEcCCCcccc-ccHHHhcCcCC-C---------------CC-H---HHHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927          299 SIIPQEPTLFR-GSVRTNLDPLG-M---------------YS-D---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGEN  357 (467)
Q Consensus       299 ~~v~Q~~~lf~-~tv~enl~~~~-~---------------~~-~---~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~  357 (467)
                      +||||++.+|. .|++||+.+.. .               .. .   +++.++++..+           ++........+
T Consensus        85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~  153 (257)
T 1g6h_A           85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----------LSHLYDRKAGE  153 (257)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGGG
T ss_pred             EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcC-----------CchhhCCCchh
Confidence            99999999886 59999996421 1               11 1   12333444444           33444455678


Q ss_pred             CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEE
Q 044927          358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVE  435 (467)
Q Consensus       358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~  435 (467)
                      ||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +|+|+|++||+++.+. .||||++|++|++++
T Consensus       154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~  233 (257)
T 1g6h_A          154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA  233 (257)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998863 4899999999999886 599999999999999


Q ss_pred             ecChhh
Q 044927          436 YDLPSK  441 (467)
Q Consensus       436 ~g~~~~  441 (467)
                      .|++++
T Consensus       234 ~g~~~~  239 (257)
T 1g6h_A          234 EGRGEE  239 (257)
T ss_dssp             EEESHH
T ss_pred             EeCHHH
Confidence            999998

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=8.2e-52  Score=392.84  Aligned_cols=206  Identities=24%  Similarity=0.284  Sum_probs=175.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh-
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR-  295 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r-  295 (467)
                      .++++|++++|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+   +| 
T Consensus         4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   81 (224)
T 2pcj_A            4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN   81 (224)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred             EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence            4899999999964  45999999999999999999999999999999999999999999999999998776543   33 


Q ss_pred             cccEEEcCCCccccc-cHHHhcCcCC---CCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          296 TKLSIIPQEPTLFRG-SVRTNLDPLG---MYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ++++||||++.+|+. |++||+.+..   ...    .+++.++++.+++.+           .......+||||||||++
T Consensus        82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~  150 (224)
T 2pcj_A           82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-----------KLSRKPYELSGGEQQRVA  150 (224)
T ss_dssp             HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-----------CTTCCGGGSCHHHHHHHH
T ss_pred             CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence            679999999998864 9999996421   112    123444555555433           333445789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDL  438 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~  438 (467)
                      |||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||++++|++|++++.|+
T Consensus       151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence            9999999999999999999999999999999998863 4899999999999887799999999999999886

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.2e-51  Score=417.37  Aligned_cols=212  Identities=25%  Similarity=0.334  Sum_probs=185.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++.  ++.||
T Consensus         3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig   78 (381)
T 3rlf_A            3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG   78 (381)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred             EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence            4899999999963  4599999999999999999999999999999999999999999999999999887765  46799


Q ss_pred             EEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+. ||+||+.+.   ...+.    +++.++++.+++.++.++.|           .+||||||||++||||
T Consensus        79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiArA  147 (381)
T 3rlf_A           79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT  147 (381)
T ss_dssp             EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred             EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHHH
Confidence            99999999975 999999753   12233    34556677777665544444           7899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |+.+|++||||||||+||+..+..+.+.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++++....
T Consensus       148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p  225 (381)
T 3rlf_A          148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP  225 (381)
T ss_dssp             HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence            999999999999999999999999999998864 3 8999999999998865 9999999999999999999998643

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=3.8e-51  Score=398.01  Aligned_cols=212  Identities=28%  Similarity=0.381  Sum_probs=184.9

Q ss_pred             cEEEEeEEEEeCCCC---CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 044927          220 RIELEDLKVRYRPNT---PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~---~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~  296 (467)
                      .++++||+++|+.+.   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...   .+|+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~   78 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR   78 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence            389999999996222   4599999999999999999999999999999999999999999999999988642   6788


Q ss_pred             ccEEEcCCC--ccccccHHHhcCcCCC------CCHHHHHHHHHHcChH--HHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          297 KLSIIPQEP--TLFRGSVRTNLDPLGM------YSDNEIWEAMEKCQLK--ATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       297 ~i~~v~Q~~--~lf~~tv~enl~~~~~------~~~~~~~~~~~~~~l~--~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      ++|||||+|  .++..|++||+.+...      ...+++.++++.+++.  ++.++.|           .+||||||||+
T Consensus        79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv  147 (266)
T 2yz2_A           79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRV  147 (266)
T ss_dssp             GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHH
T ss_pred             hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHH
Confidence            899999996  4567899999965321      1235677888888887  6655554           67999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +|||||+++|++|||||||++||+.++..+.+.|++.. +|+|+|++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus       148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  227 (266)
T 2yz2_A          148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE  227 (266)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999998863 48999999999999875 99999999999999999999875


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       228 ~  228 (266)
T 2yz2_A          228 K  228 (266)
T ss_dssp             H
T ss_pred             C
Confidence            3

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=4.2e-51  Score=401.57  Aligned_cols=214  Identities=24%  Similarity=0.375  Sum_probs=178.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      +.++++||+|.+    .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             ++
T Consensus        39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i  101 (290)
T 2bbs_A           39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI  101 (290)
T ss_dssp             -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred             ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence            469999999864    2489999999999999999999999999999999999999999999998             49


Q ss_pred             EEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          299 SIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       299 ~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      +||||++.+|++|++||+. ..........++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++|++
T Consensus       102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l  180 (290)
T 2bbs_A          102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL  180 (290)
T ss_dssp             EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred             EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence            9999999999999999997 323344455667788899999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHH-HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHH
Q 044927          379 LVLDEATASIDSATDAILQRII-REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFS  450 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~  450 (467)
                      |||||||++||+.++..+.+.+ ++..+++|+|++||+++.+..||++++|++|++++.|+++++......|.
T Consensus       181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~  253 (290)
T 2bbs_A          181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFS  253 (290)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHH
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHH
Confidence            9999999999999999999874 44446899999999999988899999999999999999999976444443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=5.4e-51  Score=410.96  Aligned_cols=212  Identities=25%  Similarity=0.388  Sum_probs=185.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..  +++||
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig   78 (359)
T 2yyz_A            3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG   78 (359)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred             EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence            3899999999953  4599999999999999999999999999999999999999999999999999877653  57899


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+. |++||+.+...   .+    ++++.++++.+++.++.++.|           .+||||||||++||||
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArA  147 (359)
T 2yyz_A           79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARA  147 (359)
T ss_dssp             EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHH
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999875 99999975321   11    235667777777766555544           6899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |+.+|++||||||||+||+.++..+.+.|+++.+  |.|+|+|||+++.+. .||||++|++|+|++.|+++++.+..
T Consensus       148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p  225 (359)
T 2yyz_A          148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP  225 (359)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence            9999999999999999999999999999988642  899999999999876 59999999999999999999998653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=3.8e-51  Score=391.78  Aligned_cols=207  Identities=23%  Similarity=0.326  Sum_probs=177.2

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++||+++|++    +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+  ..|+++||
T Consensus         2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~   74 (240)
T 2onk_A            2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF   74 (240)
T ss_dssp             CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred             EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence            689999999952    59999999999 999999999999999999999999999999999999987543  34678999


Q ss_pred             EcCCCccccc-cHHHhcCcCCCC-C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          301 IPQEPTLFRG-SVRTNLDPLGMY-S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      |||++.+|+. |++||+.+.... .    .+++.++++.+++.++           ......+||||||||++|||||++
T Consensus        75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~  143 (240)
T 2onk_A           75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-----------LDRKPARLSGGERQRVALARALVI  143 (240)
T ss_dssp             CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTT-----------TTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHc
Confidence            9999999876 999999753221 1    2334455555554433           333447899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      +|++|||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+.. |||+++|++|++++.|+++++.+.
T Consensus       144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  217 (240)
T 2onk_A          144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA  217 (240)
T ss_dssp             CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999998864  28999999999998764 999999999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=5.1e-51  Score=410.21  Aligned_cols=213  Identities=26%  Similarity=0.435  Sum_probs=184.9

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..|+++||+++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.  .+++|
T Consensus        13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i   89 (355)
T 1z47_A           13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV   89 (355)
T ss_dssp             EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred             ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence            369999999999322 348999999999999999999999999999999999999999999999999987654  36789


Q ss_pred             EEEcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      |||||++.+|+. ||+||+.+.   ...+    ++++.++++.+++.++.++.|           .+||||||||++|||
T Consensus        90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalAr  158 (355)
T 1z47_A           90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALAR  158 (355)
T ss_dssp             EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence            999999999875 999999652   1122    234566777777765555444           689999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||+.+|++||||||||+||+.++..+.+.|+++.+  |.|+|+|||+++.+.. ||||++|++|+|++.|+++++.+.
T Consensus       159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  236 (355)
T 1z47_A          159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK  236 (355)
T ss_dssp             HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999999988642  8999999999998865 999999999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=5.7e-51  Score=398.90  Aligned_cols=212  Identities=21%  Similarity=0.280  Sum_probs=180.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC--SMGLKDLRTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~  297 (467)
                      .|+++||+++|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  ..+...+|++
T Consensus        21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   98 (279)
T 2ihy_A           21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH   98 (279)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred             eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence            5999999999963  45999999999999999999999999999999999999999999999999987  6777788899


Q ss_pred             cEEEcCCCcc-ccc--cHHHhcCcCCC--------CCH---HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          298 LSIIPQEPTL-FRG--SVRTNLDPLGM--------YSD---NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       298 i~~v~Q~~~l-f~~--tv~enl~~~~~--------~~~---~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      ||||||++.+ |..  |++||+.+...        ..+   +++.++++.+++.+.           ......+||||||
T Consensus        99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqk  167 (279)
T 2ihy_A           99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-----------AQQYIGYLSTGEK  167 (279)
T ss_dssp             EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHH
T ss_pred             EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHH
Confidence            9999999865 444  99999965311        122   234445555555433           3344578999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceE--EEEccChhHHh-hcCEEEEEeCCEEEEecCh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTV--ITVAHRVPTIT-DSDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tv--i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~  439 (467)
                      ||++|||||+.+|++|||||||++||+.+++.+.+.|++.. +|+|+  |+|||+++.+. .||||++|++|++++.|++
T Consensus       168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  247 (279)
T 2ihy_A          168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV  247 (279)
T ss_dssp             HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            99999999999999999999999999999999999998864 38899  99999999886 5999999999999999999


Q ss_pred             hhHhc
Q 044927          440 SKLME  444 (467)
Q Consensus       440 ~~l~~  444 (467)
                      +++.+
T Consensus       248 ~~~~~  252 (279)
T 2ihy_A          248 EDILT  252 (279)
T ss_dssp             HHHCS
T ss_pred             HHHhc
Confidence            99875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.4e-50  Score=409.65  Aligned_cols=212  Identities=24%  Similarity=0.357  Sum_probs=179.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..  +++||
T Consensus        11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig   86 (372)
T 1v43_A           11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS   86 (372)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred             eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence            4999999999953  4599999999999999999999999999999999999999999999999999877654  57899


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC---CCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM---YSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+. ||+||+.+...   .+.    +++.++++.+++.++.++.|           .+||||||||++||||
T Consensus        87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA  155 (372)
T 1v43_A           87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA  155 (372)
T ss_dssp             EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999875 99999976421   222    34566777777665555444           7899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |+.+|++||||||||+||+.++..+.+.|+++.+  +.|+|+|||+++.+. .||||++|++|+|++.|+++++....
T Consensus       156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p  233 (372)
T 1v43_A          156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP  233 (372)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence            9999999999999999999999999999988642  799999999999876 59999999999999999999998643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=6e-51  Score=411.02  Aligned_cols=212  Identities=23%  Similarity=0.368  Sum_probs=183.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++.  +++||
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig   78 (362)
T 2it1_A            3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG   78 (362)
T ss_dssp             CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred             EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence            3899999999953  4599999999999999999999999999999999999999999999999999877654  57899


Q ss_pred             EEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+. ||+||+.+.   ...+.    +++.++++.+++.++.++.|           .+||||||||++||||
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA  147 (362)
T 2it1_A           79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIARA  147 (362)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999975 999999652   11222    34556667766655444443           6899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |+.+|++||||||||+||+.++..+.+.|+++.+  |.|+|+|||+++.+. .||||++|++|+|++.|+++++++..
T Consensus       148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p  225 (362)
T 2it1_A          148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP  225 (362)
T ss_dssp             HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            9999999999999999999999999999988642  899999999999876 59999999999999999999998643

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.1e-50  Score=407.45  Aligned_cols=210  Identities=24%  Similarity=0.415  Sum_probs=184.3

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      ++++||+++|++  . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.  .+++|||
T Consensus         2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~   76 (348)
T 3d31_A            2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF   76 (348)
T ss_dssp             EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred             EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence            789999999953  4 8999999999999999999999999999999999999999999999999987554  4678999


Q ss_pred             EcCCCccccc-cHHHhcCcC----CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          301 IPQEPTLFRG-SVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |||++.+|+. ||+||+.+.    +...++++.++++.+++.++.++.|           .+||||||||++|||||+.+
T Consensus        77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~~  145 (348)
T 3d31_A           77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN  145 (348)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred             EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHcC
Confidence            9999999976 999999652    1122356777777777765554444           68999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhccC
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |++||||||||+||+.++..+.+.|+++.  .|+|+|+|||+++.+. .||||++|++|+|++.|+++++.+..
T Consensus       146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p  219 (348)
T 3d31_A          146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP  219 (348)
T ss_dssp             CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence            99999999999999999999999998863  3899999999999876 49999999999999999999998643

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=6.2e-51  Score=410.52  Aligned_cols=214  Identities=24%  Similarity=0.377  Sum_probs=184.4

Q ss_pred             cEEEEeEEEEeCCCCCc--eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHH
Q 044927          220 RIELEDLKVRYRPNTPL--VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDL  294 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~--~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~  294 (467)
                      .|+++||+++|++  ..  +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+   ....
T Consensus         3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~   80 (353)
T 1oxx_K            3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE   80 (353)
T ss_dssp             CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred             EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence            3899999999953  45  899999999999999999999999999999999999999999999999986521   2234


Q ss_pred             hcccEEEcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          295 RTKLSIIPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      +++||||||++.+|+. |++||+.+...   .+    ++++.++++.+++.++.++.|           .+||||||||+
T Consensus        81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QRv  149 (353)
T 1oxx_K           81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV  149 (353)
T ss_dssp             GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred             hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence            7789999999999975 99999975321   22    234566777777766555544           68999999999


Q ss_pred             HHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          367 CLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       367 ~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      +|||||+.+|++||||||||+||+.++..+.+.|+++.  .|+|+|+|||+++.+.. ||||++|++|+|++.|+++++.
T Consensus       150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~  229 (353)
T 1oxx_K          150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY  229 (353)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999998864  28999999999998765 9999999999999999999998


Q ss_pred             ccC
Q 044927          444 ETN  446 (467)
Q Consensus       444 ~~~  446 (467)
                      +..
T Consensus       230 ~~p  232 (353)
T 1oxx_K          230 DNP  232 (353)
T ss_dssp             HSC
T ss_pred             hCc
Confidence            643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=1.5e-50  Score=389.60  Aligned_cols=207  Identities=19%  Similarity=0.261  Sum_probs=183.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++      ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+|++++
T Consensus         4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~   76 (249)
T 2qi9_C            4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA   76 (249)
T ss_dssp             EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred             EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence            4899999986      3899999999999999999999999999999999999999 99999999998888888889999


Q ss_pred             EEcCCCccccc-cHHHhcCcCCC--CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          300 IIPQEPTLFRG-SVRTNLDPLGM--YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      ||||++.+|.. |++||+.+...  .+++++.++++..++.++.+           ....+||||||||++|||||+++|
T Consensus        77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p  145 (249)
T 2qi9_C           77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT  145 (249)
T ss_dssp             EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred             EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcCC
Confidence            99999998865 99999975421  13566777777777755433           334789999999999999999999


Q ss_pred             C-------EEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927          377 R-------ILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       377 ~-------iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +       +|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus       146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9       999999999999999999999998863 4899999999999985 599999999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=2.1e-50  Score=409.13  Aligned_cols=212  Identities=22%  Similarity=0.330  Sum_probs=182.9

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC------CCHHH
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS------MGLKD  293 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~------~~~~~  293 (467)
                      .|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+      .++  
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--   78 (372)
T 1g29_1            3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--   78 (372)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred             EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence            4899999999953  459999999999999999999999999999999999999999999999999865      443  


Q ss_pred             HhcccEEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          294 LRTKLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       294 ~r~~i~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                      .+++||||||++.+|+. |++||+.+..   ..+.    +++.++++.+++.++.++.|           .+||||||||
T Consensus        79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QR  147 (372)
T 1g29_1           79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQR  147 (372)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHH
T ss_pred             hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHH
Confidence            35789999999999864 9999996521   1222    34556677776655544444           7899999999


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhH
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ++|||||+.+|++||||||||+||+.++..+.+.|+++.+  +.|+|+|||+++.+. .||||++|++|+|++.|+++++
T Consensus       148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l  227 (372)
T 1g29_1          148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV  227 (372)
T ss_dssp             HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999988642  899999999999886 4999999999999999999999


Q ss_pred             hccC
Q 044927          443 METN  446 (467)
Q Consensus       443 ~~~~  446 (467)
                      +...
T Consensus       228 ~~~p  231 (372)
T 1g29_1          228 YDKP  231 (372)
T ss_dssp             HHSC
T ss_pred             HhCc
Confidence            8643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=8.1e-50  Score=385.31  Aligned_cols=209  Identities=22%  Similarity=0.285  Sum_probs=171.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~-r~  296 (467)
                      .++++||+|+|++  .++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+.... |.
T Consensus         3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (250)
T 2d2e_A            3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK   80 (250)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred             eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence            4899999999963  4599999999999999999999999999999999999  89999999999999988776655 45


Q ss_pred             ccEEEcCCCccccc-cHHHhcCcC-----CC-CC----HHHHHHHHHHcCh-HHHHHhCCCcccccccCCCCC-CChhHH
Q 044927          297 KLSIIPQEPTLFRG-SVRTNLDPL-----GM-YS----DNEIWEAMEKCQL-KATISRLPMLLDSSVSDEGEN-WSVGQR  363 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~-tv~enl~~~-----~~-~~----~~~~~~~~~~~~l-~~~i~~l~~g~~t~v~~~g~~-LSgGq~  363 (467)
                      .++|+||+|.+|++ |++||+.+.     .. ..    .+++.++++..++ .+..           .....+ ||||||
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~~LSgGqk  149 (250)
T 2d2e_A           81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-----------SRYLNEGFSGGEK  149 (250)
T ss_dssp             TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-----------GSBTTCC----HH
T ss_pred             cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-----------cCCcccCCCHHHH
Confidence            69999999999876 999998532     11 11    1233444444444 1222           223356 999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEecChh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEYDLPS  440 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~g~~~  440 (467)
                      ||++|||||+++|++|||||||++||+.++..+.+.|++.. +++|+|+|||+++.+..  |||+++|++|++++.|+++
T Consensus       150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            99999999999999999999999999999999999999875 48999999999999876  5999999999999999987


Q ss_pred             h
Q 044927          441 K  441 (467)
Q Consensus       441 ~  441 (467)
                      .
T Consensus       230 ~  230 (250)
T 2d2e_A          230 L  230 (250)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=2.5e-49  Score=385.30  Aligned_cols=211  Identities=19%  Similarity=0.244  Sum_probs=175.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL--VEPENGRILIDGLDICSMGLKDL-RT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~-r~  296 (467)
                      .++++||+++|++  .++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|.++...+.... +.
T Consensus        20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~   97 (267)
T 2zu0_C           20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE   97 (267)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred             eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence            5999999999953  4599999999999999999999999999999999999  57899999999999987776655 45


Q ss_pred             ccEEEcCCCccccc-cHHHhcCcC--------C--CCCHH----HHHHHHHHcChHHHHHhCCCcccc-cccCCCC-CCC
Q 044927          297 KLSIIPQEPTLFRG-SVRTNLDPL--------G--MYSDN----EIWEAMEKCQLKATISRLPMLLDS-SVSDEGE-NWS  359 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~-tv~enl~~~--------~--~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~-~LS  359 (467)
                      .++||||++.+|+. |+.+|+.+.        .  ..+.+    ++.++++..+           +++ ....... +||
T Consensus        98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~~LS  166 (267)
T 2zu0_C           98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK-----------MPEDLLTRSVNVGFS  166 (267)
T ss_dssp             TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTT-----------CCTTTTTSBTTTTCC
T ss_pred             CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcC-----------CChhHhcCCcccCCC
Confidence            69999999998876 899988431        0  11222    2333344333           322 1222333 599


Q ss_pred             hhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh--cCEEEEEeCCEEEEe
Q 044927          360 VGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD--SDMFMVLSYGELVEY  436 (467)
Q Consensus       360 gGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~--~d~i~vl~~G~iv~~  436 (467)
                      ||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..  |||+++|++|++++.
T Consensus       167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~  246 (267)
T 2zu0_C          167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS  246 (267)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999874 48999999999998875  899999999999999


Q ss_pred             cChhhHh
Q 044927          437 DLPSKLM  443 (467)
Q Consensus       437 g~~~~l~  443 (467)
                      |+++++.
T Consensus       247 g~~~~~~  253 (267)
T 2zu0_C          247 GDFTLVK  253 (267)
T ss_dssp             ECTTHHH
T ss_pred             cCHHHHh
Confidence            9998874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.3e-49  Score=383.00  Aligned_cols=206  Identities=23%  Similarity=0.317  Sum_probs=177.3

Q ss_pred             EEEEeEEEEeCCC--CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          221 IELEDLKVRYRPN--TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       221 i~~~~vs~~y~~~--~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ++++|++++|++.  .+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++...  .. |+++
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i   76 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY   76 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence            7899999999631  1359999999999 9999999999999999999999999 9999999999998654  33 7789


Q ss_pred             E-EEcCCCccccccHHHhcCcCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          299 S-IIPQEPTLFRGSVRTNLDPLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       299 ~-~v~Q~~~lf~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      + ||||++.+ ..|++||+.+..   ...++++.++++..++.+          ...+....+||||||||++|||||++
T Consensus        77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~  145 (263)
T 2pjz_A           77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALAS  145 (263)
T ss_dssp             EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence            9 99999998 889999996421   233455666666665540          33344557899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh-hcC-EEEEEeCCEEEEecChhhHhc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT-DSD-MFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d-~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      +|++|||||||++||+.+++.+.+.|++..+  |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus       146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~  215 (263)
T 2pjz_A          146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE  215 (263)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred             CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence            9999999999999999999999999988754  9999999999876 499 999999999999999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=7.9e-49  Score=378.73  Aligned_cols=199  Identities=20%  Similarity=0.314  Sum_probs=170.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.             ++++++
T Consensus         4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~   69 (253)
T 2nq2_C            4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG   69 (253)
T ss_dssp             EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred             eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence            48999999999622 4599999999999999999999999999999999999999999998             356799


Q ss_pred             EEcCCCccc-cccHHHhcCcCCC--------CC---HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          300 IIPQEPTLF-RGSVRTNLDPLGM--------YS---DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       300 ~v~Q~~~lf-~~tv~enl~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ||||++.+| ..|++||+.+...        ..   ++++.++++.+++.++.+           ....+||||||||++
T Consensus        70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~  138 (253)
T 2nq2_C           70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLIL  138 (253)
T ss_dssp             EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred             EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHH
Confidence            999999887 5699999965310        12   134556666666654333           334789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHh-hcCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTIT-DSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+++|++|||||||++||+.++..+.+.|++.. + |+|+|++||+++.+. .||++++|++|+ ++.|+++++.+
T Consensus       139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~  217 (253)
T 2nq2_C          139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT  217 (253)
T ss_dssp             HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence            9999999999999999999999999999999998864 3 899999999999985 599999999999 99999999874

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=3.5e-48  Score=364.61  Aligned_cols=193  Identities=27%  Similarity=0.400  Sum_probs=163.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||+++|++   ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+|+.++
T Consensus        10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~   81 (214)
T 1sgw_A           10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF   81 (214)
T ss_dssp             EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred             eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence            6999999999963   5999999999999999999999999999999999999999999999999885     3578899


Q ss_pred             EEcCCCccccc-cHHHhcCcC----C-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          300 IIPQEPTLFRG-SVRTNLDPL----G-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~~----~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      ||||++.+|.. |++||+.+.    + ...++++.++++.+++           +.. +....+||||||||++|||||+
T Consensus        82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~-~~~~~~LSgGqkqrv~laraL~  149 (214)
T 1sgw_A           82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-----------LDL-KKKLGELSQGTIRRVQLASTLL  149 (214)
T ss_dssp             EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-----------CCT-TSBGGGSCHHHHHHHHHHHHTT
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CcC-CCChhhCCHHHHHHHHHHHHHH
Confidence            99999998876 999999642    1 1224455566665544           333 4456789999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      ++|++|||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||+++ +.+|+|
T Consensus       150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~  210 (214)
T 1sgw_A          150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI  210 (214)
T ss_dssp             SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred             hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence            9999999999999999999999999998864 47899999999999887 67766 445766

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=4.8e-40  Score=349.31  Aligned_cols=199  Identities=26%  Similarity=0.312  Sum_probs=164.4

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..++++|+++.|++   ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+             +.++
T Consensus       286 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i  349 (538)
T 1yqt_A          286 TLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV  349 (538)
T ss_dssp             EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred             eEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence            35899999999953   3699999999999999999999999999999999999999999975             2369


Q ss_pred             EEEcCCCcc-ccccHHHhcCcC--CC-CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          299 SIIPQEPTL-FRGSVRTNLDPL--GM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       299 ~~v~Q~~~l-f~~tv~enl~~~--~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +||||++.. +..||.+|+...  .. ...+.+.++++..+           +.........+||||||||++|||||+.
T Consensus       350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL~~  418 (538)
T 1yqt_A          350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATLLR  418 (538)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred             EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence            999999876 456998887421  00 11222333333333           3333344557899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHhc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLME  444 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~  444 (467)
                      +|++|||||||++||+.++..+.+.|+++.  .|.|+|+|||+++.+.. ||||++|++  |++++.|+|++++.
T Consensus       419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            999999999999999999999999999863  48999999999999875 999999996  78889999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=7.8e-40  Score=351.41  Aligned_cols=199  Identities=25%  Similarity=0.316  Sum_probs=165.2

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..++++|++++|++   ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.+             +.++
T Consensus       356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i  419 (607)
T 3bk7_A          356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV  419 (607)
T ss_dssp             EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred             eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence            35899999999953   2699999999999999999999999999999999999999999976             2369


Q ss_pred             EEEcCCCcc-ccccHHHhcCcC-C-CC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          299 SIIPQEPTL-FRGSVRTNLDPL-G-MY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       299 ~~v~Q~~~l-f~~tv~enl~~~-~-~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      ||+||++.+ +..|+.+|+... . .. ..+.+.++++..++.           ........+||||||||++|||||++
T Consensus       420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~QRv~iAraL~~  488 (607)
T 3bk7_A          420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-----------DLYDRNVEDLSGGELQRVAIAATLLR  488 (607)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred             EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence            999999876 466999988532 0 00 122333444444433           22334457899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHhc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLME  444 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~  444 (467)
                      +|++|||||||++||+.++..+.+.|+++.  .++|+|+|||+++.+.. ||||++|++  |++++.|+|+++++
T Consensus       489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            999999999999999999999999999863  48999999999999875 999999996  88889999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=5.3e-39  Score=340.66  Aligned_cols=199  Identities=20%  Similarity=0.246  Sum_probs=164.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..++++|+++.|++   ..|++.||++++||++||+||||||||||+++|+|+++|++|+|.+++            ..+
T Consensus       268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i  332 (538)
T 3ozx_A          268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL  332 (538)
T ss_dssp             EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred             ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence            35899999999963   368888999999999999999999999999999999999999999765            358


Q ss_pred             EEEcCCCcc-ccccHHHhcCcCC-C---CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          299 SIIPQEPTL-FRGSVRTNLDPLG-M---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       299 ~~v~Q~~~l-f~~tv~enl~~~~-~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      +|+||++.. +..|+++|+.... .   .....+.++++..++.+           .......+||||||||++|||||+
T Consensus       333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv~iAraL~  401 (538)
T 3ozx_A          333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-----------LLESNVNDLSGGELQKLYIAATLA  401 (538)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-----------CTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHH
Confidence            999999764 4679999985321 1   12233444555555543           233445789999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHh
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLM  443 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~  443 (467)
                      ++|++|||||||++||+.++..+.+.|+++.  .++|+|+|||+++.+.. ||||++|++  |.+...+++.++.
T Consensus       402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~  476 (538)
T 3ozx_A          402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK  476 (538)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence            9999999999999999999999999998863  48999999999999876 999999986  5666777776654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.7e-38  Score=350.82  Aligned_cols=197  Identities=20%  Similarity=0.286  Sum_probs=150.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .++++|++|+|++..+++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|.           .+++
T Consensus       671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~  739 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA  739 (986)
T ss_dssp             EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred             eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence            59999999999753346899999999999999999999999999999999999999999999862           1356


Q ss_pred             EEcCCCcc-----ccc----------------------------------------------------------------
Q 044927          300 IIPQEPTL-----FRG----------------------------------------------------------------  310 (467)
Q Consensus       300 ~v~Q~~~l-----f~~----------------------------------------------------------------  310 (467)
                      |++|++..     ...                                                                
T Consensus       740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~  819 (986)
T 2iw3_A          740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC  819 (986)
T ss_dssp             EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence            66655321     011                                                                


Q ss_pred             --cHHHhcCcCC------------------------------------------CCCHHHHHHHHHHcChHHHHHhCCCc
Q 044927          311 --SVRTNLDPLG------------------------------------------MYSDNEIWEAMEKCQLKATISRLPML  346 (467)
Q Consensus       311 --tv~enl~~~~------------------------------------------~~~~~~~~~~~~~~~l~~~i~~l~~g  346 (467)
                        |++||+.+..                                          ....+++.+.++..++.+...     
T Consensus       820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~-----  894 (986)
T 2iw3_A          820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV-----  894 (986)
T ss_dssp             EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH-----
T ss_pred             hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh-----
Confidence              2233332110                                          011233444455554432110     


Q ss_pred             ccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEE
Q 044927          347 LDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMF  425 (467)
Q Consensus       347 ~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i  425 (467)
                          ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.  +.|+|+|||+++.+.. |||+
T Consensus       895 ----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrV  968 (986)
T 2iw3_A          895 ----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEV  968 (986)
T ss_dssp             ----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred             ----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence                12334789999999999999999999999999999999999999999999875  5799999999999875 9999


Q ss_pred             EEEeCCEEEEecC
Q 044927          426 MVLSYGELVEYDL  438 (467)
Q Consensus       426 ~vl~~G~iv~~g~  438 (467)
                      ++|++|+++..|+
T Consensus       969 ivL~~G~Iv~~G~  981 (986)
T 2iw3_A          969 WAVKDGRMTPSGH  981 (986)
T ss_dssp             ECCBTTBCCC---
T ss_pred             EEEECCEEEEeCC
Confidence            9999999987764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-38  Score=334.94  Aligned_cols=197  Identities=23%  Similarity=0.287  Sum_probs=162.1

Q ss_pred             EeEEEEeCCCCCceecceeEEEeCC-----cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          224 EDLKVRYRPNTPLVLKGITCTFKEG-----TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl~i~~G-----e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ++++++|++. ..+++++||++++|     |++||+||||||||||+++|+|+++|++|+.      +.       +..+
T Consensus       350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i  415 (608)
T 3j16_B          350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV  415 (608)
T ss_dssp             SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred             cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence            6778899643 34799999999999     7899999999999999999999999999962      11       3469


Q ss_pred             EEEcCCCc-cccccHHHhcCc--CCC-CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          299 SIIPQEPT-LFRGSVRTNLDP--LGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       299 ~~v~Q~~~-lf~~tv~enl~~--~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +|+||++. .|..|+++|+..  ... ...+...++++..++.+.           ......+||||||||++|||||+.
T Consensus       416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL~~  484 (608)
T 3j16_B          416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLALGI  484 (608)
T ss_dssp             EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred             EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHh
Confidence            99999975 467799998742  111 233444455555554332           333457899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeC--CEEEEecChhhHhcc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSY--GELVEYDLPSKLMET  445 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~~  445 (467)
                      +|++|||||||++||+.+...+.+.|+++.  .|+|+|+|||+++.+.. ||||++|++  |+++..|+|+++++.
T Consensus       485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence            999999999999999999999999998853  48999999999999876 999999996  899999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=2.4e-38  Score=339.79  Aligned_cols=197  Identities=25%  Similarity=0.354  Sum_probs=156.7

Q ss_pred             cEEE--------EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE---------EEc
Q 044927          220 RIEL--------EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LID  282 (467)
Q Consensus       220 ~i~~--------~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i---------~i~  282 (467)
                      .|++        +||+++|++. ..+|+|+| ++++||++||+||||||||||+++|+|+++|++|++         .++
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~  160 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR  160 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred             eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence            3788        8999999643 24899999 999999999999999999999999999999999996         345


Q ss_pred             CEeCCCCCHH--HHhcccEEEcCCCc----cccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCC
Q 044927          283 GLDICSMGLK--DLRTKLSIIPQEPT----LFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE  356 (467)
Q Consensus       283 g~~i~~~~~~--~~r~~i~~v~Q~~~----lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~  356 (467)
                      |.++......  ..+..+++++|...    ++.+|+.||+....  ..+++.++++..++.+..++           ...
T Consensus       161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~~-----------~~~  227 (607)
T 3bk7_A          161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDR-----------ELH  227 (607)
T ss_dssp             TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGGS-----------BGG
T ss_pred             CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhCC-----------Chh
Confidence            6544321111  12346889998743    34469999985321  12345667777766544333           236


Q ss_pred             CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927          357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYG  431 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G  431 (467)
                      +||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|+++
T Consensus       228 ~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            799999999999999999999999999999999999999999998863 48999999999998875 9999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=2.8e-38  Score=335.83  Aligned_cols=196  Identities=26%  Similarity=0.313  Sum_probs=151.4

Q ss_pred             EEE-EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE---------EEcCEeCCCCC
Q 044927          221 IEL-EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI---------LIDGLDICSMG  290 (467)
Q Consensus       221 i~~-~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i---------~i~g~~i~~~~  290 (467)
                      .++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++         .++|.++....
T Consensus        21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~   98 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF   98 (538)
T ss_dssp             ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred             hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence            455 6999999643 24899999 999999999999999999999999999999999995         34564432211


Q ss_pred             HHH--HhcccEEEcCCCcc----ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          291 LKD--LRTKLSIIPQEPTL----FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       291 ~~~--~r~~i~~v~Q~~~l----f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      ...  .+..+++++|+...    +.+|+.+|+....  ..+++.++++..++.+..           .....+|||||||
T Consensus        99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~-----------~~~~~~LSgGekQ  165 (538)
T 1yqt_A           99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVL-----------EREIQHLSGGELQ  165 (538)
T ss_dssp             HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTT-----------TSBGGGCCHHHHH
T ss_pred             HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhh-----------hCChhhCCHHHHH
Confidence            111  13468899997543    3358888874211  123455666666654322           2234679999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCC
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYG  431 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G  431 (467)
                      |++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|
T Consensus       166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            9999999999999999999999999999999999998853 48999999999999876 9999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=5.8e-36  Score=332.19  Aligned_cols=196  Identities=20%  Similarity=0.259  Sum_probs=163.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      ..+...|++++|++  +.+|+|+||++++|++++|+||||||||||+++|+|      |+|  +|.+..    .  +.++
T Consensus       434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----~--~~~~  497 (986)
T 2iw3_A          434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----E--ECRT  497 (986)
T ss_dssp             CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----T--TSCE
T ss_pred             ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----c--ceeE
Confidence            35888899999963  459999999999999999999999999999999995      554  554331    1  1247


Q ss_pred             EEEcCCC-ccc-cccHHHhcCcC-CCCCHHHHHHHHHHcCh-HHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          299 SIIPQEP-TLF-RGSVRTNLDPL-GMYSDNEIWEAMEKCQL-KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       299 ~~v~Q~~-~lf-~~tv~enl~~~-~~~~~~~~~~~~~~~~l-~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      +|++|++ .++ ..|+.||+... ... .+++.++++..++ .+..++.+           .+||||||||++|||||+.
T Consensus       498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~~  565 (986)
T 2iw3_A          498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVLR  565 (986)
T ss_dssp             EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHHT
T ss_pred             EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHhc
Confidence            8999985 444 45999998531 112 6678888898888 45555443           6799999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCEEE-EecChhhHhc
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELV-EYDLPSKLME  444 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~~  444 (467)
                      +|++|||||||++||+.+...+.+.|++  .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++..
T Consensus       566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            9999999999999999999999999988  58999999999999875 9999999999997 6899998864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=3.1e-37  Score=336.97  Aligned_cols=204  Identities=23%  Similarity=0.292  Sum_probs=137.0

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------ccEEEEcCEeC
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------------------SALFRLVEPE-------NGRILIDGLDI  286 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll---------------------~~l~gl~~p~-------~G~i~i~g~~i  286 (467)
                      ..+|+|+||+|++||++||+||||||||||+                     +++.|+..|+       .|.|.++|.+.
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~  110 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT  110 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence            3589999999999999999999999999998                     8999999998       45666666554


Q ss_pred             CCCCHHHHhcccEEEcCCCccc--------------------cccHHHhcCcCCCC--CH--HHHH-----HHHHHcChH
Q 044927          287 CSMGLKDLRTKLSIIPQEPTLF--------------------RGSVRTNLDPLGMY--SD--NEIW-----EAMEKCQLK  337 (467)
Q Consensus       287 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~tv~enl~~~~~~--~~--~~~~-----~~~~~~~l~  337 (467)
                      ..    ..++.+++|+|.+.++                    ..|++||+.+....  .+  .+..     ++.+..   
T Consensus       111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  183 (670)
T 3ux8_A          111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---  183 (670)
T ss_dssp             --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred             hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence            32    2244566666654332                    34899998653211  11  1110     111111   


Q ss_pred             HHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEc
Q 044927          338 ATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATASIDSATDAILQRIIREEF-PGSTVITVA  413 (467)
Q Consensus       338 ~~i~~l~~g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it  413 (467)
                      +.+..+  |++.. ......+||||||||++|||||+.+|+  +|||||||++||+.+...+.+.|+++. .|+|+|+||
T Consensus       184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt  261 (670)
T 3ux8_A          184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE  261 (670)
T ss_dssp             HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            122322  23221 234457899999999999999999998  999999999999999999999998863 589999999


Q ss_pred             cChhHHhhcCEEEEE------eCCEEEEecChhhHhccCc
Q 044927          414 HRVPTITDSDMFMVL------SYGELVEYDLPSKLMETNS  447 (467)
Q Consensus       414 H~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~~  447 (467)
                      |+++.+..||||++|      ++|++++.|+++++.+...
T Consensus       262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~  301 (670)
T 3ux8_A          262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN  301 (670)
T ss_dssp             CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred             CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence            999988889999999      8999999999999987543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=100.00  E-value=1.6e-41  Score=334.39  Aligned_cols=230  Identities=15%  Similarity=0.119  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccCCCCCCCCC-CcccEEEEeEEEEeCCCC
Q 044927          156 GFVGLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPEPPAIIEETKPPASWP-SHGRIELEDLKVRYRPNT  234 (467)
Q Consensus       156 g~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~vs~~y~~~~  234 (467)
                      +.+.+++.+..+ ..++..+...+..++++..+.+|+.++++.+++...   .   ...++ ..+.|+++||+|+|+   
T Consensus        43 ~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~---~---~~~~~~~~~~i~~~~vs~~y~---  112 (305)
T 2v9p_A           43 SNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT---G---EGSWKSILTFFNYQNIELITF---  112 (305)
T ss_dssp             HHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC---S---SCCTHHHHHHHHHTTCCHHHH---
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---C---CCcccccCCeEEEEEEEEEcC---
Confidence            334444444333 356667777888889999999999999975432211   0   01111 123589999999996   


Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT  314 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  314 (467)
                      .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|                  +++++|++.+|.+|+++
T Consensus       113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~  171 (305)
T 2v9p_A          113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLAD  171 (305)
T ss_dssp             HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTT
T ss_pred             hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHH
Confidence            35999999999999999999999999999999999999   7988                  35789999999999997


Q ss_pred             -hcCcCCCCCHHHHHHHHHHcChHHHHHh-CCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927          315 -NLDPLGMYSDNEIWEAMEKCQLKATISR-LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT  392 (467)
Q Consensus       315 -nl~~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~  392 (467)
                       |+.+....++          +++++++. +|+|++      |.+||||||||   |||++++|+|||    ||+||+.+
T Consensus       172 ~ni~~~~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~  228 (305)
T 2v9p_A          172 TRAALVDDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA  228 (305)
T ss_dssp             CSCEEEEEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred             HhhccCccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence             8876433332          23456666 888887      68999999999   999999999999    99999999


Q ss_pred             HHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          393 DAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       393 ~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      +..+..             +|||++.+..||+| +|++|+|++.|+|+++   ++.|++++...
T Consensus       229 ~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~  275 (305)
T 2v9p_A          229 EDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRL  275 (305)
T ss_dssp             CGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTT
T ss_pred             HHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHc
Confidence            888752             39999999899999 9999999999999999   57787776543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=1.3e-36  Score=332.04  Aligned_cols=202  Identities=25%  Similarity=0.304  Sum_probs=145.9

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------cCCCCCccEEEEcCEeCCCCCHH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF----------------------RLVEPENGRILIDGLDICSMGLK  292 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~----------------------gl~~p~~G~i~i~g~~i~~~~~~  292 (467)
                      ..+|+|+||+|++||++||+||||||||||+++|+                      |+.. .+|.|.++|.++...+..
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~  413 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS  413 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence            45899999999999999999999999999998754                      3333 356899999887654321


Q ss_pred             HHhc-----------------------------------------ccEEEcCCCccc-----------------------
Q 044927          293 DLRT-----------------------------------------KLSIIPQEPTLF-----------------------  308 (467)
Q Consensus       293 ~~r~-----------------------------------------~i~~v~Q~~~lf-----------------------  308 (467)
                      ..+.                                         ..|+++|+..++                       
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (670)
T 3ux8_A          414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT  493 (670)
T ss_dssp             CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred             chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence            1111                                         113333322211                       


Q ss_pred             ----------cccHHHhcCcCCCCCH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC-
Q 044927          309 ----------RGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN-  376 (467)
Q Consensus       309 ----------~~tv~enl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p-  376 (467)
                                ..|++||+.+...... ++..+.++.+++.          +...+....+||||||||++|||||+++| 
T Consensus       494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~iAraL~~~p~  563 (670)
T 3ux8_A          494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLG----------YMKLGQPATTLSGGEAQRVKLAAELHRRSN  563 (670)
T ss_dssp             BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCT----------TSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred             ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCc----------hhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence                      2366666654322111 1222222222221          12345566899999999999999999887 


Q ss_pred             --CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCEEEEecChhhHhccCc
Q 044927          377 --RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGELVEYDLPSKLMETNS  447 (467)
Q Consensus       377 --~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~~  447 (467)
                        ++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+..||||++|      ++|+|++.|+++++.+...
T Consensus       564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~  643 (670)
T 3ux8_A          564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE  643 (670)
T ss_dssp             SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCc
Confidence              5999999999999999999999998864 489999999999998889999999      8999999999999986443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-36  Score=321.32  Aligned_cols=196  Identities=24%  Similarity=0.330  Sum_probs=144.3

Q ss_pred             eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-----------EEcCEeCCCCCHHH
Q 044927          225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGLKD  293 (467)
Q Consensus       225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-----------~i~g~~i~~~~~~~  293 (467)
                      |++++|+.+. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+|           .+.|.++..+....
T Consensus        82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~  159 (608)
T 3j16_B           82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM  159 (608)
T ss_dssp             TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred             CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence            5688997543 4688877 589999999999999999999999999999999998           23333222111122


Q ss_pred             Hhccc--EEEcCCCcc----ccc---cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          294 LRTKL--SIIPQEPTL----FRG---SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       294 ~r~~i--~~v~Q~~~l----f~~---tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                      +.+.+  .+.+|....    +.+   ++.+++........+++.++++..++.+..+           ....+|||||||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGe~Q  228 (608)
T 3j16_B          160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK-----------RDIEKLSGGELQ  228 (608)
T ss_dssp             HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHHHHH
T ss_pred             HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC-----------CChHHCCHHHHH
Confidence            22333  233332211    111   3444443212223456666777666644333           344789999999


Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEE
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~i  433 (467)
                      |++|||||+++|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|..
T Consensus       229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~  299 (608)
T 3j16_B          229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS  299 (608)
T ss_dssp             HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred             HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence            9999999999999999999999999999999999999864 48999999999999876 999999998654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=3e-36  Score=319.50  Aligned_cols=193  Identities=21%  Similarity=0.300  Sum_probs=146.5

Q ss_pred             eEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-----------EEcCEeCCCCCHHH
Q 044927          225 DLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-----------LIDGLDICSMGLKD  293 (467)
Q Consensus       225 ~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-----------~i~g~~i~~~~~~~  293 (467)
                      +++.+|+.+.. .|.++.. +++||++||+||||||||||+|+|+|+++|++|+|           .++|.++..+....
T Consensus         4 ~~~~~~~~~~f-~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~   81 (538)
T 3ozx_A            4 EVIHRYKVNGF-KLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL   81 (538)
T ss_dssp             CEEEESSTTSC-EEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred             CCceecCCCce-eecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence            56789976642 3444432 45899999999999999999999999999999998           57776553321111


Q ss_pred             Hh------cccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          294 LR------TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       294 ~r------~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ..      ..+.+++|.+.++.+++++++....  ..+++.++++..++.+..+           ....+||||||||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~Qrv~  148 (538)
T 3ozx_A           82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWN-----------KDANILSGGGLQRLL  148 (538)
T ss_dssp             HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHH
T ss_pred             hhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence            11      1234444555566778888764211  1223456666666643322           233679999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhh-cCEEEEEeCCE
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGE  432 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~-~d~i~vl~~G~  432 (467)
                      |||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus       149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            999999999999999999999999999999999998779999999999998876 99999998754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=2.8e-34  Score=318.33  Aligned_cols=205  Identities=22%  Similarity=0.298  Sum_probs=147.6

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHH---------HHHhcCCCC------Ccc------EEEEcCEeCCCCCH---
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLI---------SALFRLVEP------ENG------RILIDGLDICSMGL---  291 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll---------~~l~gl~~p------~~G------~i~i~g~~i~~~~~---  291 (467)
                      ..|+|+||+|++|++++|+||||||||||+         +++.+...+      .+|      .+.+++.++.....   
T Consensus       598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~  677 (916)
T 3pih_A          598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP  677 (916)
T ss_dssp             TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred             ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence            379999999999999999999999999997         344444333      233      35555555432210   


Q ss_pred             H-------HH-------------------------------hcccEEEcCCCccccc-----------------------
Q 044927          292 K-------DL-------------------------------RTKLSIIPQEPTLFRG-----------------------  310 (467)
Q Consensus       292 ~-------~~-------------------------------r~~i~~v~Q~~~lf~~-----------------------  310 (467)
                      .       ..                               .+..|+++|+..+++.                       
T Consensus       678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~  757 (916)
T 3pih_A          678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK  757 (916)
T ss_dssp             HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred             cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence            0       01                               1235777777655432                       


Q ss_pred             ----------cHHHhcCcCCCCC-HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC---
Q 044927          311 ----------SVRTNLDPLGMYS-DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN---  376 (467)
Q Consensus       311 ----------tv~enl~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p---  376 (467)
                                |+.|++.++.... ..+..++++.+++         ++ ..+++.+.+|||||||||+|||||+++|   
T Consensus       758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p  827 (916)
T 3pih_A          758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR  827 (916)
T ss_dssp             TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred             cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence                      2333332221110 1112222333222         21 3467888999999999999999999875   


Q ss_pred             CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCEEEEecChhhHhccCchH
Q 044927          377 RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGELVEYDLPSKLMETNSAF  449 (467)
Q Consensus       377 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~~~~  449 (467)
                      ++|||||||+|||+.+++.+++.|+++. +|+|+|+|||+++.++.||+|++|      ++|+|++.|+|+++++..+.|
T Consensus       828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy  907 (916)
T 3pih_A          828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY  907 (916)
T ss_dssp             EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence            7999999999999999999999998863 589999999999999999999999      899999999999999866555


Q ss_pred             H
Q 044927          450 S  450 (467)
Q Consensus       450 ~  450 (467)
                      .
T Consensus       908 t  908 (916)
T 3pih_A          908 T  908 (916)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=2.1e-33  Score=289.69  Aligned_cols=200  Identities=20%  Similarity=0.181  Sum_probs=148.2

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------------CCccE
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE--------------------------------------PENGR  278 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~--------------------------------------p~~G~  278 (467)
                      ++++++|++++| +++|+||||||||||+++|.++..                                      +.+|+
T Consensus        50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~  128 (415)
T 4aby_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA  128 (415)
T ss_dssp             TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred             ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence            699999999999 999999999999999999976653                                      45789


Q ss_pred             EEEcCEeCCCCCHHHHhcc-cEEEcCCCccccccHHHhcCcCCCCCH---H-------HHHHHHHH--------------
Q 044927          279 ILIDGLDICSMGLKDLRTK-LSIIPQEPTLFRGSVRTNLDPLGMYSD---N-------EIWEAMEK--------------  333 (467)
Q Consensus       279 i~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~enl~~~~~~~~---~-------~~~~~~~~--------------  333 (467)
                      +++||.+++..+..++.+. +++++|++.++..+..++..+......   .       ++.++.++              
T Consensus       129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~  208 (415)
T 4aby_A          129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT  208 (415)
T ss_dssp             EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence            9999999876666677666 799999988765544333211111000   0       00000000              


Q ss_pred             ----------------------------------cChHHHHHhC--CC----------------cccc---cccCCCCC-
Q 044927          334 ----------------------------------CQLKATISRL--PM----------------LLDS---SVSDEGEN-  357 (467)
Q Consensus       334 ----------------------------------~~l~~~i~~l--~~----------------g~~t---~v~~~g~~-  357 (467)
                                                        ..+.+.+..+  |.                |.+.   .+..++.. 
T Consensus       209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  288 (415)
T 4aby_A          209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE  288 (415)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence                                              0011112222  11                2111   23334433 


Q ss_pred             -------CChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927          358 -------WSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       358 -------LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl  428 (467)
                             ||||||||++|||+|+.+|  ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|
T Consensus       289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l  368 (415)
T 4aby_A          289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV  368 (415)
T ss_dssp             CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred             ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence                   7999999999999999999  9999999999999999999999999987789999999999988889999999


Q ss_pred             ----eCCEEEEec
Q 044927          429 ----SYGELVEYD  437 (467)
Q Consensus       429 ----~~G~iv~~g  437 (467)
                          ++|+++...
T Consensus       369 ~k~~~~G~~~~~~  381 (415)
T 4aby_A          369 EKQVEDGRTVSHV  381 (415)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEeccCCceEEEE
Confidence                999987653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.98  E-value=4.8e-33  Score=306.62  Aligned_cols=214  Identities=23%  Similarity=0.293  Sum_probs=154.9

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-cCC-------CCCcc-------------
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLV-------EPENG-------------  277 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~-------~p~~G-------------  277 (467)
                      ..++++|++.       ..|+|+||+|++||++||+|+||||||||++.++ |.+       .+..|             
T Consensus       628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~  700 (972)
T 2r6f_A          628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK  700 (972)
T ss_dssp             CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred             eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence            3588998852       2699999999999999999999999999999864 211       12233             


Q ss_pred             EEEEcCEeCCCCC---HH-------HH---------hcccEEEcCCCccc------------------------------
Q 044927          278 RILIDGLDICSMG---LK-------DL---------RTKLSIIPQEPTLF------------------------------  308 (467)
Q Consensus       278 ~i~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~lf------------------------------  308 (467)
                      .|.++|.++...+   +.       ..         .+.+||++|.+.+-                              
T Consensus       701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce  780 (972)
T 2r6f_A          701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE  780 (972)
T ss_dssp             EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred             EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence            4788888774321   11       11         13468888854321                              


Q ss_pred             -------------------------cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccc-cccCCCCCCChhH
Q 044927          309 -------------------------RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDS-SVSDEGENWSVGQ  362 (467)
Q Consensus       309 -------------------------~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~v~~~g~~LSgGq  362 (467)
                                               ..|+.||+.++....  ++.+      ..+.+..+  |+.. ..+....+|||||
T Consensus       781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGGe  850 (972)
T 2r6f_A          781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIKR------KLETLYDV--GLGYMKLGQPATTLSGGE  850 (972)
T ss_dssp             TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHHH------HHHHHHHT--TCSSSBTTCCGGGCCHHH
T ss_pred             ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHHH------HHHHHHHc--CCCcccccCchhhCCHHH
Confidence                                     012222322211110  0100      12334443  4444 5667778999999


Q ss_pred             HHHHHHHHHhcCCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCE
Q 044927          363 RQLFCLGRVLLKRN---RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGE  432 (467)
Q Consensus       363 ~Qrl~iARal~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~  432 (467)
                      ||||+|||+|+++|   ++|||||||+|||+.+...+.+.|+++. .|.|||+|||+++.+..||||++|      ++|+
T Consensus       851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~  930 (972)
T 2r6f_A          851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ  930 (972)
T ss_dssp             HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCE
Confidence            99999999999875   9999999999999999999999998864 589999999999998889999999      7899


Q ss_pred             EEEecChhhHhccCchH
Q 044927          433 LVEYDLPSKLMETNSAF  449 (467)
Q Consensus       433 iv~~g~~~~l~~~~~~~  449 (467)
                      |++.|+++++.+....|
T Consensus       931 Iv~~g~~~el~~~~~~~  947 (972)
T 2r6f_A          931 IVAVGTPEEVAEVKESH  947 (972)
T ss_dssp             EEEEESHHHHHTCTTCH
T ss_pred             EEEecCHHHHHhCchhH
Confidence            99999999998754433

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.98  E-value=7e-33  Score=304.90  Aligned_cols=215  Identities=24%  Similarity=0.311  Sum_probs=154.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHH-HhcCC-------CC----------------
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISA-LFRLV-------EP----------------  274 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~-l~gl~-------~p----------------  274 (467)
                      ..++++|+++       .+|+|+||+|++||++||+|+||||||||++. |+|++       +|                
T Consensus       501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~  573 (842)
T 2vf7_A          501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS  573 (842)
T ss_dssp             CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred             ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence            4599999975       15999999999999999999999999999996 66543       23                


Q ss_pred             --Ccc-------EEEEcCEeCCCCCH----------HHHhccc---------EEEcCCCc--------------------
Q 044927          275 --ENG-------RILIDGLDICSMGL----------KDLRTKL---------SIIPQEPT--------------------  306 (467)
Q Consensus       275 --~~G-------~i~i~g~~i~~~~~----------~~~r~~i---------~~v~Q~~~--------------------  306 (467)
                        .+|       .|.++|.++...+.          ..+|+.+         ||.++...                    
T Consensus       574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~  653 (842)
T 2vf7_A          574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE  653 (842)
T ss_dssp             CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred             ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence              466       68899988754322          2233322         33222110                    


Q ss_pred             --c------------------------cc-ccHHHhcCcCCCCCHHHHHHHH----HHcChHHHHHhCCCcccc-cccCC
Q 044927          307 --L------------------------FR-GSVRTNLDPLGMYSDNEIWEAM----EKCQLKATISRLPMLLDS-SVSDE  354 (467)
Q Consensus       307 --l------------------------f~-~tv~enl~~~~~~~~~~~~~~~----~~~~l~~~i~~l~~g~~t-~v~~~  354 (467)
                        +                        +. .|+.||+.+.    -.+.....    +.....+.+..+  |+.. .++..
T Consensus       654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~lt----v~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~  727 (842)
T 2vf7_A          654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALT----VDEAHDFFADESAIFRALDTLREV--GLGYLRLGQP  727 (842)
T ss_dssp             TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCB----HHHHHHHTTTSHHHHHHHHHHHHT--TCTTSBTTCC
T ss_pred             hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhcc----HHHHHHHhhcchHHHHHHHHHHHc--CCCcccccCC
Confidence              0                        11 1444544211    00000000    000122334443  3333 35667


Q ss_pred             CCCCChhHHHHHHHHHHhcCC---CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhhcCEEEEE--
Q 044927          355 GENWSVGQRQLFCLGRVLLKR---NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITDSDMFMVL--  428 (467)
Q Consensus       355 g~~LSgGq~Qrl~iARal~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl--  428 (467)
                      ..+|||||||||+|||+|+++   |++|||||||+|||+...+.+.+.|+++ ..|.|||+|||+++.+..||||++|  
T Consensus       728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p  807 (842)
T 2vf7_A          728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGP  807 (842)
T ss_dssp             GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECS
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECC
Confidence            789999999999999999996   7999999999999999999999999886 3589999999999999889999999  


Q ss_pred             ----eCCEEEEecChhhHhccC
Q 044927          429 ----SYGELVEYDLPSKLMETN  446 (467)
Q Consensus       429 ----~~G~iv~~g~~~~l~~~~  446 (467)
                          ++|+|++.|+++++.+..
T Consensus       808 ~~g~~~G~Iv~~g~~~el~~~~  829 (842)
T 2vf7_A          808 GAGEDGGRLVAQGTPAEVAQAA  829 (842)
T ss_dssp             SSGGGCCSEEEEECHHHHTTCT
T ss_pred             CCCCCCCEEEEEcCHHHHHhCc
Confidence                799999999999998654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.6e-36  Score=315.65  Aligned_cols=190  Identities=14%  Similarity=0.046  Sum_probs=150.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-E-EEEcCEeCCCCCHHHHhcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-R-ILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~-i~i~g~~i~~~~~~~~r~~  297 (467)
                      .++++||+|+|        .++||++++|++++|+||||||||||+|+|+|+++|++| + |++|| +        .|+.
T Consensus       118 mi~~~nl~~~y--------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~  180 (460)
T 2npi_A          118 MKYIYNLHFML--------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP  180 (460)
T ss_dssp             HHHHHHHHHHH--------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred             hhhhhhhhehh--------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence            35666666666        279999999999999999999999999999999999999 9 99998 1        3678


Q ss_pred             cEEEcCCCcccc----ccHHHhcCcCCCC-----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          298 LSIIPQEPTLFR----GSVRTNLDPLGMY-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       298 i~~v~Q~~~lf~----~tv~enl~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      ++++||++.+|.    .|++||+ +....     ..+++.++++.+           |++....  ..+||||||||++|
T Consensus       181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal  246 (460)
T 2npi_A          181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ  246 (460)
T ss_dssp             SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred             eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence            999999986543    4899998 43221     111111222222           3333332  57899999999999


Q ss_pred             HHH--hcCCCCE----EEeeC-CCCCCCHHHHHHHHHHHHHHCCCceEEEEccChh------HHh-hcCE-----EEEEe
Q 044927          369 GRV--LLKRNRI----LVLDE-ATASIDSATDAILQRIIREEFPGSTVITVAHRVP------TIT-DSDM-----FMVLS  429 (467)
Q Consensus       369 ARa--l~~~p~i----liLDE-pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~------~~~-~~d~-----i~vl~  429 (467)
                      |||  |+.+|++    ||||| ||++||+. ...+.+.+++.  ++|+|+|+|+.+      .+. .|||     |++|+
T Consensus       247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~  323 (460)
T 2npi_A          247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP  323 (460)
T ss_dssp             HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred             HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence            999  9999999    99999 99999999 66777777664  679999999887      554 4999     99999


Q ss_pred             -CCEEEEecChhhHhc
Q 044927          430 -YGELVEYDLPSKLME  444 (467)
Q Consensus       430 -~G~iv~~g~~~~l~~  444 (467)
                       +|+++ .|+++++.+
T Consensus       324 k~G~iv-~g~~~~~~~  338 (460)
T 2npi_A          324 KLDGVS-AVDDVYKRS  338 (460)
T ss_dssp             CCTTCC-CCCHHHHHH
T ss_pred             CCCcEE-ECCHHHHhh
Confidence             99999 999988753

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=2.1e-29  Score=251.62  Aligned_cols=203  Identities=17%  Similarity=0.242  Sum_probs=141.4

Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC----------------------------------------------
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV----------------------------------------------  272 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~----------------------------------------------  272 (467)
                      +++++++.+| +.+|+||||||||||+++|..+.                                              
T Consensus        16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~   94 (322)
T 1e69_A           16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA   94 (322)
T ss_dssp             SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred             CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence            3678899999 99999999999999999998443                                              


Q ss_pred             ----CCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc-cccHHHhcCcCCC----C------------CHHHHHHHH
Q 044927          273 ----EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGM----Y------------SDNEIWEAM  331 (467)
Q Consensus       273 ----~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~enl~~~~~----~------------~~~~~~~~~  331 (467)
                          .+.+|++++||.++...+...+...+++.||+..++ .+++.+|+...+.    .            ..+++.+.+
T Consensus        95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~  174 (322)
T 1e69_A           95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF  174 (322)
T ss_dssp             EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred             EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                344578999999875444556666788889987765 6788888753211    0            001121111


Q ss_pred             HHc------------ChH-HHHHhCCCccccccc------CCCCCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCC
Q 044927          332 EKC------------QLK-ATISRLPMLLDSSVS------DEGENWSVGQRQLFCLGRVLL----KRNRILVLDEATASI  388 (467)
Q Consensus       332 ~~~------------~l~-~~i~~l~~g~~t~v~------~~g~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~L  388 (467)
                      +..            .+. .....++.|+++.++      .....||||||||++|||||+    .+|++|||||||++|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L  254 (322)
T 1e69_A          175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL  254 (322)
T ss_dssp             HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred             HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence            110            000 011223445554332      234689999999999999996    789999999999999


Q ss_pred             CHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEE--EEEeCCEE-EEecChhhH
Q 044927          389 DSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMF--MVLSYGEL-VEYDLPSKL  442 (467)
Q Consensus       389 D~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i--~vl~~G~i-v~~g~~~~l  442 (467)
                      |+.....+.+.+++..+++|+|++||+++....||++  ++|++|+. +.....++.
T Consensus       255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~  311 (322)
T 1e69_A          255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI  311 (322)
T ss_dssp             CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence            9999999999999887788999999998877789987  88888854 444444443

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.95  E-value=3.5e-31  Score=247.84  Aligned_cols=158  Identities=17%  Similarity=0.117  Sum_probs=101.1

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      .+|+|+    ++||+++|+||||||||||+++|+|+ +|++|+|.  +.++.. +...+++++||+||++       +||
T Consensus        14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en   78 (208)
T 3b85_A           14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK   78 (208)
T ss_dssp             HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred             HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence            489985    89999999999999999999999999 99999994  333321 2234577899999987       556


Q ss_pred             c-CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927          316 L-DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA  394 (467)
Q Consensus       316 l-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~  394 (467)
                      + .+.... ...+........+.+.++.   |           |  |||||++|||||+.+|++|||||||++    ++.
T Consensus        79 l~~~~~~~-~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~  137 (208)
T 3b85_A           79 IDPYLRPL-HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA  137 (208)
T ss_dssp             -CTTTHHH-HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred             HHHHHHHH-HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence            5 221000 0000000000011122221   1           1  999999999999999999999999999    888


Q ss_pred             HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927          395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGEL  433 (467)
Q Consensus       395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i  433 (467)
                      .+.+.|++..+++|+| +||+++.+..   ....++|..
T Consensus       138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~~  172 (208)
T 3b85_A          138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGLR  172 (208)
T ss_dssp             HHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred             HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcHH
Confidence            8999998874578999 9999986653   444566643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.95  E-value=2.9e-27  Score=239.88  Aligned_cols=83  Identities=17%  Similarity=0.251  Sum_probs=76.0

Q ss_pred             CCCCCCChhHHHHHHHHHHhc------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEE
Q 044927          353 DEGENWSVGQRQLFCLGRVLL------KRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMF  425 (467)
Q Consensus       353 ~~g~~LSgGq~Qrl~iARal~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i  425 (467)
                      ....+||||||||++|||||+      .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+..||++
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~  354 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK  354 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence            445689999999999999999      7999999999999999999999999998864 489999999999998789999


Q ss_pred             EEEeCCEEEE
Q 044927          426 MVLSYGELVE  435 (467)
Q Consensus       426 ~vl~~G~iv~  435 (467)
                      ++|++|++++
T Consensus       355 ~~l~~G~i~~  364 (365)
T 3qf7_A          355 LRITGGVVVN  364 (365)
T ss_dssp             EEEETTEEC-
T ss_pred             EEEECCEEEe
Confidence            9999999975

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.94  E-value=4.4e-28  Score=221.40  Aligned_cols=147  Identities=14%  Similarity=0.179  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHH
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWE  329 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~  329 (467)
                      +++|+||||||||||+++|+|++.     |.++|.+..+......++++||++|++     +..+|+. . ..       
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~-~~-------   62 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-S-SK-------   62 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-E-ET-------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-H-hh-------
Confidence            689999999999999999999985     556776543332124567899999987     3334441 0 00       


Q ss_pred             HHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH-----hcCCCCEEEeeC--CCCCCCHHHHHHHHHHHHH
Q 044927          330 AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV-----LLKRNRILVLDE--ATASIDSATDAILQRIIRE  402 (467)
Q Consensus       330 ~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa-----l~~~p~iliLDE--pts~LD~~~~~~i~~~l~~  402 (467)
                           +       .+  .+..+++.+.+||||||||++||||     ++.+|+++||||  ||++||+...+.+.+.+++
T Consensus        63 -----~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           63 -----F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             -----T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             -----c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence                 0       00  0134556677899999999999996     999999999999  9999999999999998876


Q ss_pred             HCCCceEEEEcc---ChhHHhh-cCEEEEEeCCEEEE
Q 044927          403 EFPGSTVITVAH---RVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       403 ~~~~~tvi~itH---~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                        .+.|+|+++|   +.+.+.. |||    .+|+|++
T Consensus       129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence              4677888885   7777765 787    5677765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.94  E-value=6.7e-28  Score=218.74  Aligned_cols=149  Identities=14%  Similarity=0.146  Sum_probs=105.5

Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCc--cccccHHHhcC
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPT--LFRGSVRTNLD  317 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~tv~enl~  317 (467)
                      |+||++++||+++|+||||||||||++++.+      |...++        .+.+|   ++++|++.  .+.+++.+++.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~~   63 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVLH   63 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHHH
Confidence            6899999999999999999999999999653      222222        22333   67777753  12222222221


Q ss_pred             cCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH-----
Q 044927          318 PLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT-----  392 (467)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~-----  392 (467)
                                 ..        ....+..|+...+.. -...|||||||++||||+..+|++|+|||||++||+.+     
T Consensus        64 -----------~~--------~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~  123 (171)
T 4gp7_A           64 -----------YI--------VSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD  123 (171)
T ss_dssp             -----------HH--------HHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred             -----------HH--------HHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence                       00        011112344444433 24469999999999999999999999999999999994     


Q ss_pred             -----------HHHHHHHHHHH-CCCceEEEEccChhHHhhcCEE
Q 044927          393 -----------DAILQRIIREE-FPGSTVITVAHRVPTITDSDMF  425 (467)
Q Consensus       393 -----------~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i  425 (467)
                                 ...+.+.+++. .+|.|+|++||+++.+..++++
T Consensus       124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~  168 (171)
T 4gp7_A          124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE  168 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred             CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence                       47777776654 2489999999999999887765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.93  E-value=4.3e-28  Score=242.56  Aligned_cols=141  Identities=21%  Similarity=0.184  Sum_probs=114.6

Q ss_pred             EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927          223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP  302 (467)
Q Consensus       223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~  302 (467)
                      +++++| |    .++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+.  +.....++.+++++
T Consensus       151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~  223 (330)
T 2pt7_A          151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF  223 (330)
T ss_dssp             TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred             cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence            556666 5    2389999999999999999999999999999999999999999999999652  22222334444432


Q ss_pred             CCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEee
Q 044927          303 QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLD  382 (467)
Q Consensus       303 Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLD  382 (467)
                                                                       |       |||+||++|||||..+|++++||
T Consensus       224 -------------------------------------------------g-------gg~~~r~~la~aL~~~p~ilild  247 (330)
T 2pt7_A          224 -------------------------------------------------G-------GNITSADCLKSCLRMRPDRIILG  247 (330)
T ss_dssp             -------------------------------------------------B-------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred             -------------------------------------------------C-------CChhHHHHHHHHhhhCCCEEEEc
Confidence                                                             0       89999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC-ceEEEEccChhHHhhcCEEEEEeCCEE
Q 044927          383 EATASIDSATDAILQRIIREEFPG-STVITVAHRVPTITDSDMFMVLSYGEL  433 (467)
Q Consensus       383 Epts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~~~~~d~i~vl~~G~i  433 (467)
                      |||+.       .+.+.++....| .|+|+++|+++....|||+++|++|+.
T Consensus       248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS  292 (330)
T ss_dssp             CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred             CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence            99982       245566665455 489999999997778999999998853

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.93  E-value=5.2e-29  Score=235.01  Aligned_cols=168  Identities=13%  Similarity=0.051  Sum_probs=116.7

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcccEEEcCCCccccc-c-HH
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL-KDLRTKLSIIPQEPTLFRG-S-VR  313 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~-t-v~  313 (467)
                      .|+|+||++++|++++|+||||||||||+++|+|++ |  |+|.+ |.++...++ ...++.++|++|++.+|.. + ..
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   87 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE   87 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence            699999999999999999999999999999999999 6  99999 877654322 2346789999999877753 2 12


Q ss_pred             HhcC---cCC---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH-----HHHhcCCCCEEEee
Q 044927          314 TNLD---PLG---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL-----GRVLLKRNRILVLD  382 (467)
Q Consensus       314 enl~---~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i-----ARal~~~p~iliLD  382 (467)
                      +++.   +..   ..+.+++.++++....            ..++   .+|||||+||++|     ||+++.+|++++||
T Consensus        88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld  152 (218)
T 1z6g_A           88 DFLEYDNYANNFYGTLKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLL  152 (218)
T ss_dssp             CEEEEEEETTEEEEEEHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH
T ss_pred             chhhhhhcccccCCCcHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH
Confidence            2221   111   1123445555543221            1111   5789999999999     89999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927          383 EATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       383 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      |||+++|.+++..+.+.+.+..+++|   ++|    +..||+|+++++
T Consensus       153 e~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~  193 (218)
T 1z6g_A          153 SRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD  193 (218)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence            99999999999999998887655555   566    356787777654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.93  E-value=1.9e-28  Score=250.84  Aligned_cols=172  Identities=16%  Similarity=0.112  Sum_probs=133.9

Q ss_pred             ceecceeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 044927          236 LVLKGITCTFKEGT--------------------RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR  295 (467)
Q Consensus       236 ~~L~~isl~i~~Ge--------------------~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r  295 (467)
                      .+|+++||++++|+                    ++||+||||||||||+|+|+|+++|++|+|.++|.++.       |
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~  109 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M  109 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence            48999999999999                    99999999999999999999999999999999997653       1


Q ss_pred             cccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh--HHHHHHHHHHhc
Q 044927          296 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG--QRQLFCLGRVLL  373 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG--q~Qrl~iARal~  373 (467)
                        .++++|++.....|+.||+.+..  ....+.+.++..++.+.        +..+    . ||||  |+||++|||||.
T Consensus       110 --~~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~aL~  172 (413)
T 1tq4_A          110 --ERHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKAIS  172 (413)
T ss_dssp             --CCEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred             --eEEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHHHH
Confidence              27899997544669999885432  12345566666654321        2221    2 8999  999999999999


Q ss_pred             C----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC----------CCceEEEEccChhH--Hhh-cCEEE-EEe
Q 044927          374 K----------RNRILVLDEATASIDSATDAILQRIIREEF----------PGSTVITVAHRVPT--ITD-SDMFM-VLS  429 (467)
Q Consensus       374 ~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~----------~~~tvi~itH~l~~--~~~-~d~i~-vl~  429 (467)
                      +          +|++++|||||++||+.++..+.+.+++..          ...+++++||.++.  ++. ||++. .|.
T Consensus       173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence            9          999999999999999999888888887651          13678899999886  665 88874 444


Q ss_pred             CC
Q 044927          430 YG  431 (467)
Q Consensus       430 ~G  431 (467)
                      +|
T Consensus       253 eg  254 (413)
T 1tq4_A          253 IY  254 (413)
T ss_dssp             GG
T ss_pred             cc
Confidence            44

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.92  E-value=1.8e-28  Score=253.78  Aligned_cols=194  Identities=14%  Similarity=0.120  Sum_probs=153.3

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE---eCCCCC-----
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL---DICSMG-----  290 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~---~i~~~~-----  290 (467)
                      ..++++|+++.|+.+ ..+|+++ |++.+|++++|+||||||||||+++|+|+++|++|.|.++|+   ++.++.     
T Consensus       130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~  207 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG  207 (438)
T ss_dssp             CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred             CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence            458899999999633 4599999 999999999999999999999999999999999999999998   454321     


Q ss_pred             HHHHhcccEEEcCC-Cccc-cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          291 LKDLRTKLSIIPQE-PTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       291 ~~~~r~~i~~v~Q~-~~lf-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      ...+++.++|++|+ ..++ ..|+.+|+...     .+...   ..+         ......+ +...+||+|| ||++|
T Consensus       208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~---~~~---------~~v~~~l-d~l~~lS~g~-qrvsl  268 (438)
T 2dpy_A          208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFR---DRG---------QHVLLIM-DSLTRYAMAQ-REIAL  268 (438)
T ss_dssp             HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHH---TTT---------CEEEEEE-ECHHHHHHHH-HHHHH
T ss_pred             ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHH---hCC---------CCHHHHH-HhHHHHHHHH-HHHHH
Confidence            34578889999995 3333 45888887531     11111   000         0001111 2346789999 99999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-----Cc-----eEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-----GS-----TVITVAHRVPTITDSDMFMVLSYGELVEYDL  438 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~  438 (467)
                      |   +.+|++      |+|||+.+...+.+.+++..+     |+     |++++||+++ ...||++++|.+|+|+.+|+
T Consensus       269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~  338 (438)
T 2dpy_A          269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR  338 (438)
T ss_dssp             H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred             H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence            9   889998      999999999999999988644     54     9999999999 66799999999999999999


Q ss_pred             hhhHh
Q 044927          439 PSKLM  443 (467)
Q Consensus       439 ~~~l~  443 (467)
                      +.++.
T Consensus       339 ~~~~~  343 (438)
T 2dpy_A          339 LAEAG  343 (438)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            88874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.91  E-value=7.7e-27  Score=218.14  Aligned_cols=168  Identities=15%  Similarity=0.085  Sum_probs=111.4

Q ss_pred             CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cH
Q 044927          234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV  312 (467)
Q Consensus       234 ~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv  312 (467)
                      ..++++|  .++++||+++|+||||||||||+++|+|+++.    +.+++.....-.....++.++|+||++.+|.. |+
T Consensus         8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~   81 (207)
T 1znw_A            8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID   81 (207)
T ss_dssp             -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred             CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence            3457888  79999999999999999999999999999963    44443221111112236789999999988764 67


Q ss_pred             HHhcCcC----C-----CCCHHHHHHHH----------HHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          313 RTNLDPL----G-----MYSDNEIWEAM----------EKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       313 ~enl~~~----~-----~~~~~~~~~~~----------~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      .+|+...    .     ..+.+++.+.+          +..++.+.....|           ..||           ||+
T Consensus        82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~  139 (207)
T 1znw_A           82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFL  139 (207)
T ss_dssp             TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEE
T ss_pred             cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEE
Confidence            7776311    1     11233333332          2334444444444           3455           999


Q ss_pred             CCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEe
Q 044927          374 KRNRILVLDEATASI----DSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLS  429 (467)
Q Consensus       374 ~~p~iliLDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~  429 (467)
                      .+|++++|||||+++    |+..++.+.+.+++..  .+.|+|+|||+++.+.. ||||++|.
T Consensus       140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            999999999999998    7788889999888763  47899999999998875 99999985

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.90  E-value=3.1e-26  Score=222.75  Aligned_cols=145  Identities=15%  Similarity=0.110  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHHhcCcCCCCC----H
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYS----D  324 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~----~  324 (467)
                      .++|+||||||||||+|+|+|+..|++|+|.++|.++..   ...++.+++++|++.++.. ||.||+.++....    .
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            589999999999999999999999999999999988743   2346789999999988765 9999997643221    1


Q ss_pred             HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC
Q 044927          325 NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF  404 (467)
Q Consensus       325 ~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~  404 (467)
                      +.+.+.++    ..+.+.++           ..||||||||+++|||++.   +++||||+++||+... .+++.+.+  
T Consensus        81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~--  139 (270)
T 3sop_A           81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK--  139 (270)
T ss_dssp             HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT--
T ss_pred             HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh--
Confidence            23333332    33444433           4689999999999999886   9999999999999763 33344433  


Q ss_pred             CCceEEEEccChhHH
Q 044927          405 PGSTVITVAHRVPTI  419 (467)
Q Consensus       405 ~~~tvi~itH~l~~~  419 (467)
                       ..++|+|.|+.+.+
T Consensus       140 -~~~vI~Vi~K~D~l  153 (270)
T 3sop_A          140 -VVNIIPVIAKADTM  153 (270)
T ss_dssp             -TSEEEEEETTGGGS
T ss_pred             -cCcEEEEEeccccC
Confidence             38899999987755

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.90  E-value=2.7e-26  Score=226.55  Aligned_cols=174  Identities=18%  Similarity=0.181  Sum_probs=124.7

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHH--hcccEEEcCCCc-ccc-
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LFR-  309 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-  309 (467)
                      ++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+....    ...+  |..++|++|++. +++ 
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~  169 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  169 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence            35678899999999999999999999999999999999999999999876542    1233  457999999987 665 


Q ss_pred             ccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCC
Q 044927          310 GSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATA  386 (467)
Q Consensus       310 ~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts  386 (467)
                      .|+++|+.+.. ...+   ...++.+++           .........+||   |||++||||++.+|+  +|+|| ||+
T Consensus       170 ~~v~e~l~~~~~~~~d---~~lldt~gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts  231 (302)
T 3b9q_A          170 TVLSKAVKRGKEEGYD---VVLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT  231 (302)
T ss_dssp             HHHHHHHHHHHHTTCS---EEEECCCCC-----------SSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred             HHHHHHHHHHHHcCCc---chHHhcCCC-----------CcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence            48999985310 0000   001111221           111111123578   999999999999999  99999 999


Q ss_pred             CCCHHHHHHHHHHHHHHCCCceEEEEcc---------ChhHHhh-cCEEEEEeCCEE
Q 044927          387 SIDSATDAILQRIIREEFPGSTVITVAH---------RVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       387 ~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~l~~~~~-~d~i~vl~~G~i  433 (467)
                      ++|+.++.   +.+.+ ..+.|+|++||         .++.+.. .+.|.++..|+.
T Consensus       232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  284 (302)
T ss_dssp             GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence            99998653   22322 23789999999         4444443 689999999975

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.89  E-value=1.5e-23  Score=211.25  Aligned_cols=82  Identities=15%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             CCChhHHHHHHHHHHhc---------CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEE
Q 044927          357 NWSVGQRQLFCLGRVLL---------KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV  427 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v  427 (467)
                      .||||||||++|||+|+         .+|+|||||||||+||+..+..+.+.+.+..  .|+|++|| ++.  .||++++
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~  339 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR  339 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence            69999999999999999         8999999999999999999999999998864  79999999 444  8999999


Q ss_pred             EeCCEEEEecChhhHh
Q 044927          428 LSYGELVEYDLPSKLM  443 (467)
Q Consensus       428 l~~G~iv~~g~~~~l~  443 (467)
                      |++|+|++.|+++++.
T Consensus       340 l~~G~i~~~g~~~~~~  355 (359)
T 2o5v_A          340 AQAGRFTPVADEEMQA  355 (359)
T ss_dssp             EETTEEEECCCTTTSC
T ss_pred             EECCEEEecCCHHHHh
Confidence            9999999999999873

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.88  E-value=3.6e-25  Score=222.79  Aligned_cols=173  Identities=18%  Similarity=0.187  Sum_probs=125.4

Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHH--hcccEEEcCCCc-ccc-c
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKDL--RTKLSIIPQEPT-LFR-G  310 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~  310 (467)
                      .++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+....    ...+  |..++|++|++. +++ .
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            4578899999999999999999999999999999999999999999876542    1223  467999999987 664 4


Q ss_pred             cHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCC
Q 044927          311 SVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATAS  387 (467)
Q Consensus       311 tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~  387 (467)
                      |+++|+.+.. ...+.   ..++.+++           .........+||   |||++||||++.+|+  +|+|| ||++
T Consensus       228 tv~e~l~~~~~~~~d~---~lldt~Gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg  289 (359)
T 2og2_A          228 VLSKAVKRGKEEGYDV---VLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG  289 (359)
T ss_dssp             HHHHHHHHHHHTTCSE---EEEECCCC-----------SSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred             hHHHHHHHHHhCCCHH---HHHHhcCC-----------ChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence            8999985311 00000   01111221           111111123478   999999999999999  99999 9999


Q ss_pred             CCHHHHHHHHHHHHHHCCCceEEEEcc---------ChhHHhh-cCEEEEEeCCEE
Q 044927          388 IDSATDAILQRIIREEFPGSTVITVAH---------RVPTITD-SDMFMVLSYGEL  433 (467)
Q Consensus       388 LD~~~~~~i~~~l~~~~~~~tvi~itH---------~l~~~~~-~d~i~vl~~G~i  433 (467)
                      +|+.++.   +.+.+ ..+.|+|++||         .++.+.. .+.|.++..|+.
T Consensus       290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~  341 (359)
T 2og2_A          290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA  341 (359)
T ss_dssp             GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred             CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence            9998653   22222 23789999999         3444443 689999999974

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.88  E-value=2.8e-26  Score=227.46  Aligned_cols=174  Identities=14%  Similarity=0.187  Sum_probs=129.3

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCT-----------------------FKEGTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~-----------------------i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      .+.|+++||++.|.    ++++++++.                       +++|+++||+||||||||||+++|+|+++|
T Consensus        41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            34699999999994    477777765                       899999999999999999999999999999


Q ss_pred             CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC--CCC----HHHHHHHHHHcChHHHHHhCCCccc
Q 044927          275 ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--MYS----DNEIWEAMEKCQLKATISRLPMLLD  348 (467)
Q Consensus       275 ~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~--~~~----~~~~~~~~~~~~l~~~i~~l~~g~~  348 (467)
                      ..|.                 +++++|+|++++++.|+++|+.+..  ..+    .+.+.+         ++..+..|..
T Consensus       117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~---------~L~~l~~~~~  170 (312)
T 3aez_A          117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMR---------FVTSVKSGSD  170 (312)
T ss_dssp             STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHH---------HHHHHHTTCS
T ss_pred             cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHH---------HHHHhCCCcc
Confidence            7663                 4699999999998889999986432  111    122333         3333333332


Q ss_pred             -ccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh--hcCEE
Q 044927          349 -SSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTIT--DSDMF  425 (467)
Q Consensus       349 -t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~--~~d~i  425 (467)
                       ..    ...|||||+||+++|||++.+|+|||||||++.+|+..     ..+.+.. + .+|+|+|+.+...  ..+|.
T Consensus       171 ~~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~  239 (312)
T 3aez_A          171 YAC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRF  239 (312)
T ss_dssp             CEE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHH
T ss_pred             cCC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHH
Confidence             22    25799999999999999999999999999999998622     1122222 3 4578888877643  36777


Q ss_pred             EEEeCCE
Q 044927          426 MVLSYGE  432 (467)
Q Consensus       426 ~vl~~G~  432 (467)
                      +.+.+|+
T Consensus       240 ~~~rd~~  246 (312)
T 3aez_A          240 LAMRTTA  246 (312)
T ss_dssp             HHHTTTG
T ss_pred             HHHHhcc
Confidence            7666654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.88  E-value=1.5e-24  Score=218.05  Aligned_cols=194  Identities=12%  Similarity=0.106  Sum_probs=143.0

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC-------CCH
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS-------MGL  291 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~-------~~~  291 (467)
                      ..++.+++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+       ...
T Consensus        44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~  121 (347)
T 2obl_A           44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ  121 (347)
T ss_dssp             CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred             CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence            358899999999633 3589999 9999999999999999999999999999999999999999865211       111


Q ss_pred             HHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHH
Q 044927          292 KDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       292 ~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~-v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      ..+++.+.+++|...               ...+++..+...+.+.++...  .|.+.. +-+...+||+|| ||+++| 
T Consensus       122 ~~~~~~v~~~~~~~~---------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la-  182 (347)
T 2obl_A          122 STLSKCVLVVTTSDR---------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA-  182 (347)
T ss_dssp             HHHTTEEEEEECTTS---------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred             hhhhceEEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence            122333444444211               112333334443344443322  122211 113456899999 999999 


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC---CCc-----eEEEEccChhHHhhcCEEEEEeCCEEEEecChhhH
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREEF---PGS-----TVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                        +.+|++      |+|+|+.....+.+.+++..   .|.     |++++||+++ -..||+++++.+|+|+.+|+++++
T Consensus       183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred             --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence              688887      99999999999999998864   377     9999999999 455999999999999999988876

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.87  E-value=1.4e-24  Score=230.43  Aligned_cols=176  Identities=18%  Similarity=0.140  Sum_probs=123.8

Q ss_pred             EeEEEEeCCCCCceecceeE-EEeCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          224 EDLKVRYRPNTPLVLKGITC-TFKEGTRVGVVGRTGSGKTTLISA--LFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl-~i~~Ge~~~ivG~sGsGKSTll~~--l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      +++. +|+.+ .++|+++|+ .+++|++++|+||||||||||+++  +.|+++|++|.|+++|.+. ..+....++.+||
T Consensus        16 ~~~~-~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~   92 (525)
T 1tf7_A           16 QAIA-KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGW   92 (525)
T ss_dssp             SSCC-EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTC
T ss_pred             cccc-cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCC
Confidence            3443 34433 358999999 999999999999999999999999  6899999999999999872 2223345678999


Q ss_pred             EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      ++|++...     +|+.......+++..++++..++.+...+.+           ..||||             +|++++
T Consensus        93 ~~q~~~~~-----~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~li  143 (525)
T 1tf7_A           93 DLAKLVDE-----GKLFILDASPDPEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVS  143 (525)
T ss_dssp             CHHHHHHT-----TSEEEEECCCCSSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEE
T ss_pred             ChHHhhcc-----CcEEEEecCcccchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEE
Confidence            99987531     1221100000000111222223333333333           335665             588999


Q ss_pred             eeCCCCC-----CCHHHHHHHHHHHHHHC-CCceEEEEccChhHH---------hh-cCEEEEEeCC
Q 044927          381 LDEATAS-----IDSATDAILQRIIREEF-PGSTVITVAHRVPTI---------TD-SDMFMVLSYG  431 (467)
Q Consensus       381 LDEpts~-----LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~---------~~-~d~i~vl~~G  431 (467)
                      |||||+.     +|+...+.+.+.++.+. .|+|+|++||+++.+         +. ||+|++|++|
T Consensus       144 lDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~  210 (525)
T 1tf7_A          144 IDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV  210 (525)
T ss_dssp             EECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred             ECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence            9999984     68999999999888754 489999999999874         45 9999999983

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.86  E-value=3.7e-24  Score=197.15  Aligned_cols=159  Identities=17%  Similarity=0.198  Sum_probs=120.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHH
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEI  327 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~  327 (467)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.+..++  ..+++++||++|+.   .++ ++|+.......+   
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~---   69 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGLEPP---   69 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence            78999999999999999999999999 999 99999888544  34688899999986   332 344431110000   


Q ss_pred             HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH-HHHH---HhcCCCCEEEeeC--CCCCCCHHHHHHHHHHHH
Q 044927          328 WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF-CLGR---VLLKRNRILVLDE--ATASIDSATDAILQRIIR  401 (467)
Q Consensus       328 ~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl-~iAR---al~~~p~iliLDE--pts~LD~~~~~~i~~~l~  401 (467)
                                      +...+..+++.+..+|+|||+++ ++++   |++.+|+++||||  |+..+|+...+.+.+.++
T Consensus        70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~  133 (189)
T 2i3b_A           70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS  133 (189)
T ss_dssp             ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred             ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence                            11123477888889999999998 5565   6899999999999  899999988777777776


Q ss_pred             HHCCCceEE----EEccChhHHhhcCEEEEEeCCEEEEec
Q 044927          402 EEFPGSTVI----TVAHRVPTITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       402 ~~~~~~tvi----~itH~l~~~~~~d~i~vl~~G~iv~~g  437 (467)
                      .   .+++|    .++||.+ ...+|||..+++|+|++..
T Consensus       134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred             C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence            3   34455    3449875 4557888888999998754

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.86  E-value=1.9e-22  Score=227.38  Aligned_cols=170  Identities=16%  Similarity=0.142  Sum_probs=121.7

Q ss_pred             ccEEEEe-----EEEEeCCCCCceecceeEEEeC-------CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 044927          219 GRIELED-----LKVRYRPNTPLVLKGITCTFKE-------GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI  286 (467)
Q Consensus       219 ~~i~~~~-----vs~~y~~~~~~~L~~isl~i~~-------Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i  286 (467)
                      +.|+++|     |++.|+++ ..+++|++|++++       |++++|+|||||||||++|++ |+..+            
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------  814 (1022)
T ss_dssp             CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred             ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence            3599999     99999433 4599999999987       999999999999999999999 99864            


Q ss_pred             CCCCHHHHhcccE-EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHH
Q 044927          287 CSMGLKDLRTKLS-IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL  365 (467)
Q Consensus       287 ~~~~~~~~r~~i~-~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qr  365 (467)
                              ..++| ||||++.  ..|+.|||..  .            .++.+.+..   |        ..++|+++++ 
T Consensus       815 --------~aqiG~~Vpq~~~--~l~v~d~I~~--r------------ig~~d~~~~---~--------~stf~~em~~-  858 (1022)
T 2o8b_B          815 --------MAQMGCYVPAEVC--RLTPIDRVFT--R------------LGASDRIMS---G--------ESTFFVELSE-  858 (1022)
T ss_dssp             --------HHTTTCCEESSEE--EECCCSBEEE--E------------CC--------------------CHHHHHHHH-
T ss_pred             --------HhheeEEeccCcC--CCCHHHHHHH--H------------cCCHHHHhh---c--------hhhhHHHHHH-
Confidence                    23566 9999873  4577777731  1            111111111   1        1456777765 


Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHH-HHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEE--EecCh
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSAT-DAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELV--EYDLP  439 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv--~~g~~  439 (467)
                      +++|++++.+|+++||||||+|+|+.. ...++..++.+. + ++|+|++||+++.+.. ||++.++ +|++.  +.|++
T Consensus       859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~  937 (1022)
T 2o8b_B          859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC  937 (1022)
T ss_dssp             HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred             HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence            999999999999999999999999987 455667776653 3 8999999999998876 8999887 48887  45544

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.85  E-value=8.5e-23  Score=197.53  Aligned_cols=131  Identities=20%  Similarity=0.172  Sum_probs=99.3

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT  314 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  314 (467)
                      ++|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....    +..+++++|.          
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~----------   78 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR----------   78 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence            3899999  9999999999999999999999999999998 999999997653221    1112222221          


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA  394 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~  394 (467)
                                                   +.|++      ...|      |++|||||..+|++++|||||   |+++..
T Consensus        79 -----------------------------~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~  114 (261)
T 2eyu_A           79 -----------------------------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE  114 (261)
T ss_dssp             -----------------------------EBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred             -----------------------------HhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence                                         11111      1122      899999999999999999999   998865


Q ss_pred             HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEe
Q 044927          395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS  429 (467)
Q Consensus       395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~  429 (467)
                      .+.+   ....|.|+++++|+.+....|||+++|.
T Consensus       115 ~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~  146 (261)
T 2eyu_A          115 TALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF  146 (261)
T ss_dssp             HHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred             HHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence            4443   3345899999999988766688876654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.85  E-value=6.8e-21  Score=191.23  Aligned_cols=76  Identities=24%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             CCCCCChhHHH------HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEE
Q 044927          354 EGENWSVGQRQ------LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFM  426 (467)
Q Consensus       354 ~g~~LSgGq~Q------rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~  426 (467)
                      ....|||||||      |+++|||++.+|++|||||||++||+.....+.+.|++.. .++|+|+|||+.+....||+++
T Consensus       245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~  324 (339)
T 3qkt_A          245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI  324 (339)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred             ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence            34679999999      6788899999999999999999999999999999998853 4789999999987767799999


Q ss_pred             EEe
Q 044927          427 VLS  429 (467)
Q Consensus       427 vl~  429 (467)
                      +|+
T Consensus       325 ~l~  327 (339)
T 3qkt_A          325 RIS  327 (339)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.85  E-value=1.5e-21  Score=206.89  Aligned_cols=76  Identities=16%  Similarity=0.124  Sum_probs=70.9

Q ss_pred             CCC-ChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCC
Q 044927          356 ENW-SVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYG  431 (467)
Q Consensus       356 ~~L-SgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G  431 (467)
                      ..| ||||+||++||||++.+|  ++|||||||+|||+.+...+.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus       395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~  473 (517)
T 4ad8_A          395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ  473 (517)
T ss_dssp             SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred             HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            456 999999999999999999  9999999999999999999999999876689999999999998889999999654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.85  E-value=7.3e-23  Score=227.16  Aligned_cols=169  Identities=21%  Similarity=0.209  Sum_probs=119.7

Q ss_pred             HHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHh
Q 044927          263 TLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISR  342 (467)
Q Consensus       263 Tll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~  342 (467)
                      |+..+.-+.+.|..|+|+++|+++.++....+...++++.+-.    .+..++.      .-....+..+.  ..+.+..
T Consensus       383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~------~~~~~~~~~~~--~~~~L~~  450 (916)
T 3pih_A          383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTERERE------IVGELLKEIEK--RLEFLVD  450 (916)
T ss_dssp             ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTT------THHHHHHHHHH--HHHHHHT
T ss_pred             cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHH------HHHhhHHHHHH--HHHHHHH
Confidence            3445556778999999999999885543333333333322110    0111110      00111111111  1123333


Q ss_pred             CCCccccc-ccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhH
Q 044927          343 LPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPT  418 (467)
Q Consensus       343 l~~g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~  418 (467)
                      +  |++.. .+....+||||||||++|||||+++|+  +|||||||++||+.....+.+.|+++. .|.|+|+|+|+++.
T Consensus       451 v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~  528 (916)
T 3pih_A          451 V--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV  528 (916)
T ss_dssp             T--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH
T ss_pred             c--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            2  44332 455567899999999999999999887  999999999999999999999999875 48999999999999


Q ss_pred             HhhcCEEEEE------eCCEEEEecChhhHhcc
Q 044927          419 ITDSDMFMVL------SYGELVEYDLPSKLMET  445 (467)
Q Consensus       419 ~~~~d~i~vl------~~G~iv~~g~~~~l~~~  445 (467)
                      +..||+|++|      ++|+|++.|+++++++.
T Consensus       529 ~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~  561 (916)
T 3pih_A          529 IRNADHIIDIGPGGGTNGGRVVFQGTVDELLKN  561 (916)
T ss_dssp             HHTCSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred             HHhCCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence            9889999999      89999999999999864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.84  E-value=8.2e-22  Score=193.93  Aligned_cols=181  Identities=12%  Similarity=0.099  Sum_probs=119.4

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT  314 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  314 (467)
                      ++|+++++.+++|++++|+||||||||||++.|+|...|.+| .|.+.+.+   .+...+++++..+.|+..+   +..+
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~   96 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD   96 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence            379999999999999999999999999999999999999888 77665433   3455666666555554322   1222


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH-HHHHHHHHHhcCCCCEEEeeCCCC---C---
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ-RQLFCLGRVLLKRNRILVLDEATA---S---  387 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq-~Qrl~iARal~~~p~iliLDEpts---~---  387 (467)
                      ++... ..++++..+..+     ..+...+..    +.+....+|.+| +||+. |+++..+|+++|+||||+   +   
T Consensus        97 ~l~~~-~~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~  165 (296)
T 1cr0_A           97 SLKRE-IIENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE  165 (296)
T ss_dssp             HHHHH-HHHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred             ccccC-CCCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence            33210 011122222211     122222211    223335689998 67777 999999999999999999   4   


Q ss_pred             CCH-HHHHHHHHHHHHHC--CCceEEEEccCh--h--------------------HHh-hcCEEEEEeCCEE
Q 044927          388 IDS-ATDAILQRIIREEF--PGSTVITVAHRV--P--------------------TIT-DSDMFMVLSYGEL  433 (467)
Q Consensus       388 LD~-~~~~~i~~~l~~~~--~~~tvi~itH~l--~--------------------~~~-~~d~i~vl~~G~i  433 (467)
                      +|. .....+.+.|+++.  .++|||+++|..  +                    .+. .||+|++|++|+.
T Consensus       166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            455 55567778887753  389999999995  4                    455 4999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.84  E-value=1.1e-23  Score=190.80  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=87.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCC---HHHHh-cccE----EEcCCCccccccHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLDICSMG---LKDLR-TKLS----IIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~tv~enl~  317 (467)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.+||.++.+++   .+.+| ++++    +++|++.+|   +++   
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~---   76 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR---   76 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence            689999999999999999999999998   899999999987776   56777 4788    899999887   221   


Q ss_pred             cCCCCCHHHHHHHHHHcChHHHHHh-CCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          318 PLGMYSDNEIWEAMEKCQLKATISR-LPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                          .. ++.     .+++++++.+ +| |+||.++|+   |||||+|||+||||++++|++.
T Consensus        77 ----~~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A           77 ----VS-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             ----CC-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred             ----CC-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence                11 221     6799999999 99 999999995   9999999999999999999873

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.82  E-value=1.7e-22  Score=193.60  Aligned_cols=165  Identities=12%  Similarity=0.126  Sum_probs=103.5

Q ss_pred             CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHH
Q 044927          234 TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVR  313 (467)
Q Consensus       234 ~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~  313 (467)
                      ...+|+|+||++++|+++||+||||||||||+++|+|++    |.+.++          ..++.++|++|++.....|+.
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~   76 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE   76 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence            345899999999999999999999999999999999976    555444          357789999999743345888


Q ss_pred             HhcCcC-C--CC------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927          314 TNLDPL-G--MY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA  384 (467)
Q Consensus       314 enl~~~-~--~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp  384 (467)
                      +|+.+. +  ..      ..+++.+.++.         +.++.+..    ...||+||+||+++ ++++.+|+++|||||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~  142 (245)
T 2jeo_A           77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGI  142 (245)
T ss_dssp             HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred             HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCc
Confidence            876421 1  11      11222222221         22223332    25799999999988 688999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCceEEEEccChh-HHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          385 TASIDSATDAILQRIIREEFPGSTVITVAHRVP-TITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       385 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~-~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ....|..        +.+. .+.|++++||+.. ..+. ++++   ++|+     +++++.
T Consensus       143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~  186 (245)
T 2jeo_A          143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL  186 (245)
T ss_dssp             TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred             cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence            8887764        2222 3789999999744 3344 4444   6674     566665

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.82  E-value=9.1e-21  Score=208.76  Aligned_cols=180  Identities=18%  Similarity=0.211  Sum_probs=131.4

Q ss_pred             CCCCcHHHHHHHHhcC---------CCCCccEEEEcCEeCCC---CCHHHHhcccEEEcCCCccccccHHHhcCcCCCCC
Q 044927          256 RTGSGKTTLISALFRL---------VEPENGRILIDGLDICS---MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS  323 (467)
Q Consensus       256 ~sGsGKSTll~~l~gl---------~~p~~G~i~i~g~~i~~---~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~  323 (467)
                      .+..||+++.+.+...         +.|.+|+|.++|+++.+   ++..++...+.-+||++..+. +  +...+..  .
T Consensus       270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--~  344 (842)
T 2vf7_A          270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--E  344 (842)
T ss_dssp             CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS--S
T ss_pred             cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch--h
Confidence            3556899998887663         35678999999999887   455555555555555554322 2  1222111  1


Q ss_pred             HHHHH-----HHHHHcChHHHHHhCCCccccc-ccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHH
Q 044927          324 DNEIW-----EAMEKCQLKATISRLPMLLDSS-VSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAI  395 (467)
Q Consensus       324 ~~~~~-----~~~~~~~l~~~i~~l~~g~~t~-v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~  395 (467)
                      ..++.     ++.++.  . .+..+  |++.. .+....+|||||||||+||++|..+|  ++|||||||++||+...+.
T Consensus       345 ~~~i~~~i~~ei~~rl--~-~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~  419 (842)
T 2vf7_A          345 QAIALQRMAADLVKRL--D-VLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA  419 (842)
T ss_dssp             HHHHHHHHHHHHHHHH--H-HHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred             hHHHHHHHHHHHHHHH--H-HHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence            11111     121221  1 23333  44432 45666899999999999999999999  5999999999999999999


Q ss_pred             HHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE------eCCEEEEecChhhHhcc
Q 044927          396 LQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL------SYGELVEYDLPSKLMET  445 (467)
Q Consensus       396 i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~  445 (467)
                      +.+.++++. .|.|+|+|+||++.+..||+|++|      ++|++++.|+++++.+.
T Consensus       420 L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~  476 (842)
T 2vf7_A          420 LLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV  476 (842)
T ss_dssp             HHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred             HHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence            999998864 489999999999988889999999      79999999999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.82  E-value=1.5e-23  Score=212.95  Aligned_cols=174  Identities=17%  Similarity=0.164  Sum_probs=139.2

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcccEEEcC-----CCccccc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLRTKLSIIPQ-----EPTLFRG  310 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~~  310 (467)
                      +|++++  +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. +   .++..+++|+|     ++..|+.
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~  200 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD  200 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence            567665  7999999999999999999999999999998 899988776553 2   35678999999     8888999


Q ss_pred             cHHHhcCcCCCC-------CHHHHHHHHHHcCh-----------------HHHH------------HhCCCcccccccCC
Q 044927          311 SVRTNLDPLGMY-------SDNEIWEAMEKCQL-----------------KATI------------SRLPMLLDSSVSDE  354 (467)
Q Consensus       311 tv~enl~~~~~~-------~~~~~~~~~~~~~l-----------------~~~i------------~~l~~g~~t~v~~~  354 (467)
                      ++++|+...++.       +.+.++.+++.+..                 +..+            ..++.++++.++++
T Consensus       201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qr  280 (372)
T 2ewv_A          201 ALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQR  280 (372)
T ss_dssp             HHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEE
T ss_pred             HHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEE
Confidence            999999754433       55666666665432                 1111            12356788999998


Q ss_pred             CCCCChhHHHHHHHHHHhcCCCCE--EEeeCCCCCCCHH----H-----HHHHHHHHHHHCCCceEEEEccChhH
Q 044927          355 GENWSVGQRQLFCLGRVLLKRNRI--LVLDEATASIDSA----T-----DAILQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       355 g~~LSgGq~Qrl~iARal~~~p~i--liLDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                      +..+|+|  ||++++|+++.+|++  +|+||+|++||..    +     +...++.++...+|+|.+.++||++.
T Consensus       281 l~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~  353 (372)
T 2ewv_A          281 LLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP  353 (372)
T ss_dssp             EEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred             eEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence            8888999  899999999999999  9999999999965    2     33567777777889999999999873

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.82  E-value=2.2e-21  Score=205.84  Aligned_cols=153  Identities=16%  Similarity=0.145  Sum_probs=113.5

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCC
Q 044927          242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM  321 (467)
Q Consensus       242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~  321 (467)
                      +..+++|++++|+||||||||||++.++|...|. |+                 +.+.+++|++.   ..+.++....+ 
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g-  332 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG-  332 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence            4589999999999999999999999999998875 53                 01345566652   13333332111 


Q ss_pred             CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHH-----HHHHH
Q 044927          322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA-----TDAIL  396 (467)
Q Consensus       322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~-----~~~~i  396 (467)
                      .+.++    +..           .|+..........|||||+||+++||++..+|++||+| ||++||+.     ..+.+
T Consensus       333 ~~~~~----~~~-----------~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i  396 (525)
T 1tf7_A          333 MDFEE----MER-----------QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV  396 (525)
T ss_dssp             CCHHH----HHH-----------TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH
T ss_pred             CCHHH----HHh-----------CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH
Confidence            11111    111           12222333445679999999999999999999999999 99999998     88888


Q ss_pred             HHHHHHHC-CCceEEEEccCh----------hHHhh-cCEEEEEeCCE
Q 044927          397 QRIIREEF-PGSTVITVAHRV----------PTITD-SDMFMVLSYGE  432 (467)
Q Consensus       397 ~~~l~~~~-~~~tvi~itH~l----------~~~~~-~d~i~vl~~G~  432 (467)
                      .+.++.+. .|.|+|+++|+.          ..+.. ||+|++|++|+
T Consensus       397 ~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          397 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            88887653 589999999998          66664 99999999886

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.81  E-value=3.7e-20  Score=206.38  Aligned_cols=165  Identities=12%  Similarity=0.065  Sum_probs=117.1

Q ss_pred             cEEEEeEEEEeCC---CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHH--------hcCCCCCccEEEEcCEeCCC
Q 044927          220 RIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISAL--------FRLVEPENGRILIDGLDICS  288 (467)
Q Consensus       220 ~i~~~~vs~~y~~---~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l--------~gl~~p~~G~i~i~g~~i~~  288 (467)
                      .+++++...-+-.   +...+++|++|++++|++++|+|||||||||++|++        .|.+-|.++..         
T Consensus       631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~---------  701 (934)
T 3thx_A          631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE---------  701 (934)
T ss_dssp             EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred             ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence            4777765432211   224589999999999999999999999999999999        56555543321         


Q ss_pred             CCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          289 MGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       289 ~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                               ++.            .+.+.              ...++.+.+              ...+|+|++++..+
T Consensus       702 ---------~~~------------~d~i~--------------~~ig~~d~l--------------~~~lStf~~e~~~~  732 (934)
T 3thx_A          702 ---------VSI------------VDCIL--------------ARVGAGDSQ--------------LKGVSTFMAEMLET  732 (934)
T ss_dssp             ---------EEC------------CSEEE--------------EECC-----------------------CHHHHHHHHH
T ss_pred             ---------chH------------HHHHH--------------HhcCchhhH--------------HHhHhhhHHHHHHH
Confidence                     000            01110              001111111              13468888888888


Q ss_pred             HHHh--cCCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhH
Q 044927          369 GRVL--LKRNRILVLDEATASIDSATDAIL-QRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       369 ARal--~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l  442 (467)
                      |+++  +.+|+++||||||+|+|+.....+ +..++.+.  .++|+|++||+.+....||++..+++|++...++++++
T Consensus       733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL  811 (934)
T ss_dssp             HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred             HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence            8888  999999999999999999887766 44455442  48999999999888888999999999999988877765

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.81  E-value=1e-19  Score=188.34  Aligned_cols=74  Identities=19%  Similarity=0.245  Sum_probs=68.0

Q ss_pred             CCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhhcCEEEEEeC
Q 044927          357 NWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      .||||||||++||++|+    .+|+++||||||++||+.....+.+.|++... +.++|++||+......||+++++..
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~  411 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR  411 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence            49999999999999999    68999999999999999999999999988753 7899999999888888999999863

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.80  E-value=3.7e-20  Score=204.36  Aligned_cols=95  Identities=24%  Similarity=0.321  Sum_probs=87.0

Q ss_pred             ccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEE
Q 044927          351 VSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMV  427 (467)
Q Consensus       351 v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v  427 (467)
                      .+....+|||||+|||+||++|..+|  ++|||||||++||+...+.+.+.|+++. .|.|||+|+||++.+..||||++
T Consensus       498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~  577 (972)
T 2r6f_A          498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID  577 (972)
T ss_dssp             SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE
T ss_pred             cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence            45556789999999999999999985  9999999999999999999999998864 58999999999999988999999


Q ss_pred             E------eCCEEEEecChhhHhcc
Q 044927          428 L------SYGELVEYDLPSKLMET  445 (467)
Q Consensus       428 l------~~G~iv~~g~~~~l~~~  445 (467)
                      |      ++|++++.|+++++.+.
T Consensus       578 LgpgaG~~gG~iv~~G~~~e~~~~  601 (972)
T 2r6f_A          578 IGPGAGIHGGEVVAAGTPEEVMND  601 (972)
T ss_dssp             ECSSSGGGCCSEEEEECTTTTTTC
T ss_pred             eCCCccCCCCEEEEecCHHHHHhh
Confidence            9      79999999999999863

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.80  E-value=1.6e-20  Score=205.73  Aligned_cols=145  Identities=16%  Similarity=0.199  Sum_probs=111.3

Q ss_pred             ccEEEEeEEEEeCC---CCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCHHHH
Q 044927          219 GRIELEDLKVRYRP---NTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLDICSMGLKDL  294 (467)
Q Consensus       219 ~~i~~~~vs~~y~~---~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p~~G~i~i~g~~i~~~~~~~~  294 (467)
                      +.+++++.  +++-   +...+++|+||+   |++++|+||||||||||+|+++|+.. |+.|.+.    +       ..
T Consensus       549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a~  612 (765)
T 1ewq_A          549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------AE  612 (765)
T ss_dssp             SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------SS
T ss_pred             CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------hh
Confidence            35888877  3432   234689999999   99999999999999999999999874 6777652    0       11


Q ss_pred             hcccEEEcCCCcccc-ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh-
Q 044927          295 RTKLSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL-  372 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal-  372 (467)
                      +..+++++|   +|. .++.||+..                                      .+|+|++|++.+|+++ 
T Consensus       613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~  651 (765)
T 1ewq_A          613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK  651 (765)
T ss_dssp             EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred             ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence            446788876   443 255555421                                      2589999999999999 


Q ss_pred             -cCCCCEEEeeCC---CCCCCHHHH-HHHHHHHHHHCCCceEEEEccChhHHhhc
Q 044927          373 -LKRNRILVLDEA---TASIDSATD-AILQRIIREEFPGSTVITVAHRVPTITDS  422 (467)
Q Consensus       373 -~~~p~iliLDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~l~~~~~~  422 (467)
                       +.+|+++|||||   |+++|+.+. ..+.+.+.+  .++|+|++||+.+....+
T Consensus       652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~  704 (765)
T 1ewq_A          652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG  704 (765)
T ss_dssp             HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred             hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence             999999999999   999999875 578888877  589999999998876554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.79  E-value=3.1e-20  Score=174.89  Aligned_cols=147  Identities=18%  Similarity=0.175  Sum_probs=100.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-------CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEP-------ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL  316 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-------~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl  316 (467)
                      .+++|++++|+||||||||||+++|+|.+.|       ..|.+++++.+.  ..    ++++++++|+..++..|+.+|+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~   94 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI   94 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence            6899999999999999999999999996655       445888887542  11    2357778888777777899998


Q ss_pred             CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh-------cCCCCEEEeeCCCCCCC
Q 044927          317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL-------LKRNRILVLDEATASID  389 (467)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal-------~~~p~iliLDEpts~LD  389 (467)
                      .+.......+.                                   ++.+..++++       ..+|++++|||||+.+|
T Consensus        95 ~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~  139 (231)
T 4a74_A           95 YVARAFNSNHQ-----------------------------------MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR  139 (231)
T ss_dssp             EEEECCSHHHH-----------------------------------HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred             EEEecCChHHH-----------------------------------HHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence            64332222211                                   1112222222       35899999999999999


Q ss_pred             HH-------HH-----HHHHHHHHHHC--CCceEEEEccChh----HHhh-cCEEEEEeCC
Q 044927          390 SA-------TD-----AILQRIIREEF--PGSTVITVAHRVP----TITD-SDMFMVLSYG  431 (467)
Q Consensus       390 ~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~l~----~~~~-~d~i~vl~~G  431 (467)
                      +.       .+     ..+.+.+.+..  .++|+|++||..+    .+.. ||++++|++|
T Consensus       140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence            84       21     24555555532  3899999999544    4665 8999999975

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.79  E-value=2.2e-19  Score=158.54  Aligned_cols=81  Identities=23%  Similarity=0.221  Sum_probs=71.4

Q ss_pred             CCCCCCChhHHHHHHHH------HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEE
Q 044927          353 DEGENWSVGQRQLFCLG------RVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMF  425 (467)
Q Consensus       353 ~~g~~LSgGq~Qrl~iA------Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i  425 (467)
                      ....+||||||||++||      ||++.+|+++||||||++||+.+...+.+.+++.. .++|+|++||+++....||++
T Consensus        53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i  132 (148)
T 1f2t_B           53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV  132 (148)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred             CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence            45678999999999876      99999999999999999999999999999999864 478999999999666669999


Q ss_pred             EEE--eCCEE
Q 044927          426 MVL--SYGEL  433 (467)
Q Consensus       426 ~vl--~~G~i  433 (467)
                      ++|  ++|..
T Consensus       133 i~l~~~~g~s  142 (148)
T 1f2t_B          133 IRISLENGSS  142 (148)
T ss_dssp             EEEEEETTEE
T ss_pred             EEEEcCCCeE
Confidence            999  45643

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.79  E-value=6.8e-21  Score=191.84  Aligned_cols=166  Identities=19%  Similarity=0.132  Sum_probs=115.0

Q ss_pred             eecce-eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCc----cE-EEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927          237 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLISALFRLV--EPEN----GR-ILIDGLDICSMGLKDLRTKLSIIPQEPTLF  308 (467)
Q Consensus       237 ~L~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~--~p~~----G~-i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf  308 (467)
                      .|+++ ++.+++|++++|+||||||||||++.+++.+  +|++    |+ |++++.+..      .++++++++|++.++
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~  192 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD  192 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence            56665 6899999999999999999999999999998  6766    68 999987641      245688899999888


Q ss_pred             cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc-------CCCCEEEe
Q 044927          309 RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-------KRNRILVL  381 (467)
Q Consensus       309 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~-------~~p~iliL  381 (467)
                      ..++.+|+.+.....                                   |.+|+|++.++++++       .+|+++|+
T Consensus       193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl  237 (349)
T 1pzn_A          193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV  237 (349)
T ss_dssp             HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred             HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence            789999986432222                                   234555555555555       78999999


Q ss_pred             eCCCCCCCHHH------------HHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          382 DEATASIDSAT------------DAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       382 DEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      ||||+++|+..            ...+...|.+..  .++|+|+++|....... ++...+...|++++.+.+..+.
T Consensus       238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~  314 (349)
T 1pzn_A          238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY  314 (349)
T ss_dssp             ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred             eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence            99999999862            234444455432  48999999998775542 3445667778887777665553

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.78  E-value=1e-21  Score=211.57  Aligned_cols=189  Identities=16%  Similarity=0.203  Sum_probs=120.3

Q ss_pred             cEEEEeEEEEeCCCCCceecce----------eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCC
Q 044927          220 RIELEDLKVRYRPNTPLVLKGI----------TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICS  288 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~i----------sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~  288 (467)
                      .++++|+++.|+...+++|+.+          +++++.   +||+||||||||||+++|+|++.| ++|.|+++|.++..
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~   86 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL   86 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence            5889999999964333455444          366665   999999999999999999999988 79999999998632


Q ss_pred             --C-CHHHHhcccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHH
Q 044927          289 --M-GLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ  364 (467)
Q Consensus       289 --~-~~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Q  364 (467)
                        . ....+|+.++|++|++.+++. ||++|+...           ...      .....           ..+|   ++
T Consensus        87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~------~~~~~-----------~~~s---~~  135 (608)
T 3szr_A           87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNA------IAGEG-----------MGIS---HE  135 (608)
T ss_dssp             EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHH------HHCSS-----------SCCC---SC
T ss_pred             ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHH------hcCCc-----------cccc---hH
Confidence              1 134678899999999988764 899988420           000      00001           1111   23


Q ss_pred             HHHHHHHhcCCCCEEEeeCC------CCCCCHHHHHHHHHHHHHHC---CCceEEEEccChhHH--------hh-----c
Q 044927          365 LFCLGRVLLKRNRILVLDEA------TASIDSATDAILQRIIREEF---PGSTVITVAHRVPTI--------TD-----S  422 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEp------ts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~--------~~-----~  422 (467)
                      ++.++.+...+|+++++|||      |++||+..+..+.+.++++.   .+.++++++|+++..        ..     .
T Consensus       136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~  215 (608)
T 3szr_A          136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD  215 (608)
T ss_dssp             CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred             HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence            34455555678999999999      99999999999999998852   256888999987632        22     3


Q ss_pred             CEEEEEeCCEEEEecChhhH
Q 044927          423 DMFMVLSYGELVEYDLPSKL  442 (467)
Q Consensus       423 d~i~vl~~G~iv~~g~~~~l  442 (467)
                      ..|+|+.++.+++.|+.+++
T Consensus       216 rtI~VlTK~Dlv~~g~~~~~  235 (608)
T 3szr_A          216 RTIGILTKPDLVDKGTEDKV  235 (608)
T ss_dssp             SEEEEEECGGGSSSSSTTCC
T ss_pred             ceEEEecchhhcCcccHHHH
Confidence            56899999988888877654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.78  E-value=7.6e-23  Score=189.83  Aligned_cols=158  Identities=15%  Similarity=0.135  Sum_probs=118.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccH
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSV  312 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv  312 (467)
                      ++|++++|+||||||||||+++|+|+++             |..|+  ++|.++...+...+++.+   +|++++|.+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~   76 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF   76 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence            5899999999999999999999999986             78897  589888888888888876   79999999999


Q ss_pred             HHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH-HhcCCCCEEEeeCCCCCCCHH
Q 044927          313 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR-VLLKRNRILVLDEATASIDSA  391 (467)
Q Consensus       313 ~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR-al~~~p~iliLDEpts~LD~~  391 (467)
                      .+|+ ++  .++++++++++.....-+ +..|.|+++....           ++ .|| +++.+|++++|||||+++|.+
T Consensus        77 ~~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~  140 (198)
T 1lvg_A           77 SGNL-YG--TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE  140 (198)
T ss_dssp             TTEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred             cCcc-CC--CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence            9998 32  356778777765321100 1123444443221           12 567 899999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeC
Q 044927          392 TDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       392 ~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      +++.|.+.|.+..++   +.++|  +. ..+|+|+++++
T Consensus       141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~  173 (198)
T 1lvg_A          141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD  173 (198)
T ss_dssp             CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred             CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence            999999988775433   35677  33 67999998875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.77  E-value=7.3e-20  Score=184.33  Aligned_cols=147  Identities=20%  Similarity=0.169  Sum_probs=106.5

Q ss_pred             EeEEEEeCCCCCceecceeE-------EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHh
Q 044927          224 EDLKVRYRPNTPLVLKGITC-------TFKEGTRVGVVGRTGSGKTTLISALFRLVEPE-NGRILIDGLDICSMGLKDLR  295 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl-------~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r  295 (467)
                      .+++++|.+...+.|+++.+       ...+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++.   .+
T Consensus        92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~  167 (356)
T 3jvv_A           92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE  167 (356)
T ss_dssp             EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred             cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence            56778885555567888776       77899999999999999999999999999997 56665443332 221   23


Q ss_pred             cccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          296 TKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      ...++++|.+....     .      .+-.+                                        +|||||..+
T Consensus       168 ~~~~~v~q~~~~~~-----~------~~~~~----------------------------------------~La~aL~~~  196 (356)
T 3jvv_A          168 SKKCLVNQREVHRD-----T------LGFSE----------------------------------------ALRSALRED  196 (356)
T ss_dssp             CSSSEEEEEEBTTT-----B------SCHHH----------------------------------------HHHHHTTSC
T ss_pred             ccccceeeeeeccc-----c------CCHHH----------------------------------------HHHHHhhhC
Confidence            34455665432110     0      00000                                        999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCC
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYG  431 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G  431 (467)
                      |+++++||||   |+++...+.+.   ...|.|+++++|+.+.+..+||+++|..|
T Consensus       197 PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~  246 (356)
T 3jvv_A          197 PDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA  246 (356)
T ss_dssp             CSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred             cCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence            9999999999   77775555444   23489999999999998889999888543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=1.4e-20  Score=185.79  Aligned_cols=161  Identities=17%  Similarity=0.096  Sum_probs=80.6

Q ss_pred             EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927          224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL-VEPENGRILIDGLDICSMGLKDLRTKLSIIP  302 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl-~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~  302 (467)
                      +||++.|++  +.++++++|+|      +|+||||||||||++.|+|. ..|++| |.++|.++.. . .. ++.+++++
T Consensus         2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~~   69 (301)
T 2qnr_A            2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVEI   69 (301)
T ss_dssp             ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred             CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEEe
Confidence            478889963  35899999988      99999999999999999998 889999 8888877643 1 12 45689999


Q ss_pred             CCCccc-cccHHHhcCcCCCCCH-HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          303 QEPTLF-RGSVRTNLDPLGMYSD-NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       303 Q~~~lf-~~tv~enl~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                      |++.++ .-|+.|+..+...... ++.....+.  +.+..+..           ..++|||||||+.+|||++    +++
T Consensus        70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~-----------~~~~sgg~rqrv~~ara~~----ll~  132 (301)
T 2qnr_A           70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERY-----------LHDESGLNRRHIIDNRVHC----CFY  132 (301)
T ss_dssp             C---CCEEEEEEEEC-----------CTTHHHH--HHHHHHHH-----------HHHHTSSCCTTCCCCCCCE----EEE
T ss_pred             cCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHH-----------HHHhCHHhhhhhhhhhhhh----eee
Confidence            987654 4588888754221111 111111111  11111111           1457999999999999986    999


Q ss_pred             eeCCCCC-CCHHHHHHHHHHHHHHC--CCceEEEEccChh
Q 044927          381 LDEATAS-IDSATDAILQRIIREEF--PGSTVITVAHRVP  417 (467)
Q Consensus       381 LDEpts~-LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~  417 (467)
                      +||||++ ||+...    +.+++..  .+.++|+..|++.
T Consensus       133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            9999985 999864    3344433  2678899999974

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.77  E-value=1.7e-20  Score=174.14  Aligned_cols=168  Identities=14%  Similarity=0.156  Sum_probs=100.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCccEEEEc-------CEeCC-
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV-----EPENGRILID-------GLDIC-  287 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~-----~p~~G~i~i~-------g~~i~-  287 (467)
                      ++++|++|.|+.   +++++  |++++|.+++|+|+||||||||++.|+|..     .|+.|.+.+.       +..+. 
T Consensus         4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D   78 (210)
T 1pui_A            4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD   78 (210)
T ss_dssp             -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred             hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence            789999999952   47888  889999999999999999999999999998     8888887642       22221 


Q ss_pred             --CCC--------HHHHhcccEEEcCCCccccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCC
Q 044927          288 --SMG--------LKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGE  356 (467)
Q Consensus       288 --~~~--------~~~~r~~i~~v~Q~~~lf~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~  356 (467)
                        .+.        .+.+++.+++++|+...+.+ ++..++.......++++.+.++.       ..+|.   -.++.+..
T Consensus        79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~---~~v~nK~D  148 (210)
T 1pui_A           79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAV---LVLLTKAD  148 (210)
T ss_dssp             CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCE---EEEEECGG
T ss_pred             CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCe---EEEEeccc
Confidence              111        12344445555554333322 33333321111111222222221       12221   12344455


Q ss_pred             CCChhHHHH-HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927          357 NWSVGQRQL-FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE  403 (467)
Q Consensus       357 ~LSgGq~Qr-l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~  403 (467)
                      .+|+||+|| +..+|+++.+|+++++|||||++|+.....+.+.|.+.
T Consensus       149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence            789999999 89999999999999999999999999999999988774

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.77  E-value=3.8e-21  Score=195.01  Aligned_cols=176  Identities=13%  Similarity=0.113  Sum_probs=125.1

Q ss_pred             eecceeEEEeC--CcEEEEEcCCCCcHHHHHHHHhcCCCCCc----cEEEEc----CEeCCCCCHHHHhcccEEEcCCCc
Q 044927          237 VLKGITCTFKE--GTRVGVVGRTGSGKTTLISALFRLVEPEN----GRILID----GLDICSMGLKDLRTKLSIIPQEPT  306 (467)
Q Consensus       237 ~L~~isl~i~~--Ge~~~ivG~sGsGKSTll~~l~gl~~p~~----G~i~i~----g~~i~~~~~~~~r~~i~~v~Q~~~  306 (467)
                      +.+.|++++++  |++++|+||||||||||+++|+|+++|++    |+|+++    |.++ .++..++ ++|++++|++.
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~  234 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI  234 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence            45789999999  99999999999999999999999999999    999874    5555 4455555 55999999998


Q ss_pred             cccccHHHhcCcCCCC-CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc-CCCCEEEeeC-
Q 044927          307 LFRGSVRTNLDPLGMY-SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL-KRNRILVLDE-  383 (467)
Q Consensus       307 lf~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~-~~p~iliLDE-  383 (467)
                      +|..|+++|+.+.... .+....                            .+|+|++|+..+++++. .+|++++||| 
T Consensus       235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~  286 (365)
T 1lw7_A          235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN  286 (365)
T ss_dssp             HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred             HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence            8999999999754311 111111                            12455567777777764 5888888888 


Q ss_pred             --CC------CCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhc
Q 044927          384 --AT------ASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       384 --pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                        |+      +++|+..+..+.+.+++..+  +.++++++|.-...+.+|++.++++  +++.++++||.+
T Consensus       287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~  355 (365)
T 1lw7_A          287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN  355 (365)
T ss_dssp             CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred             CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence              54      57888888888888866433  6788888875333344666666654  556667777754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.76  E-value=8.9e-22  Score=183.69  Aligned_cols=139  Identities=17%  Similarity=0.184  Sum_probs=105.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc---cHHHhcCcC-C
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG---SVRTNLDPL-G  320 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~---tv~enl~~~-~  320 (467)
                      .++|+++||+||||||||||+++|+|++.|                      +++|++|++.++..   |+++|..+. .
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~   60 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD   60 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence            578999999999999999999999999875                      58999999988743   676765321 1


Q ss_pred             ---CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH----HHHHHHHHHhcCCCCEEEeeCCCCC------
Q 044927          321 ---MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ----RQLFCLGRVLLKRNRILVLDEATAS------  387 (467)
Q Consensus       321 ---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq----~Qrl~iARal~~~p~iliLDEpts~------  387 (467)
                         ....+.+.++++..++.+.           +...+..+|+||    +||+++||+++.+|+++++||||++      
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i  129 (211)
T 3asz_A           61 HPDAFDLALYLEHAQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV  129 (211)
T ss_dssp             SGGGBCHHHHHHHHHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred             ChhhhhHHHHHHHHHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence               1233455555554433222           122345678885    5789999999999999999999999      


Q ss_pred             -CCHHHHHHHHHHHHHH--CCCceEEEEccCh
Q 044927          388 -IDSATDAILQRIIREE--FPGSTVITVAHRV  416 (467)
Q Consensus       388 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~l  416 (467)
                       ||+..+..+.+.+++.  .+|+|++.++|+.
T Consensus       130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence             9999988888888764  3588999999985

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.75  E-value=2.1e-20  Score=184.50  Aligned_cols=164  Identities=17%  Similarity=0.115  Sum_probs=108.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHH--hcccEEEcCCCccccc-cHHHhcCc
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL--RTKLSIIPQEPTLFRG-SVRTNLDP  318 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~lf~~-tv~enl~~  318 (467)
                      .+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.....    ..+  |..+++++|++.+++. ++++|+..
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999866531    222  4579999999887654 78888742


Q ss_pred             CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCCCCHHHHHHH
Q 044927          319 LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATASIDSATDAIL  396 (467)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~LD~~~~~~i  396 (467)
                      .      .    .+...  ..+-..+...+    .....++..++||++||||+..+|+  ++.|| |+++.+      +
T Consensus       180 ~------~----~~~~d--~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~  236 (304)
T 1rj9_A          180 M------K----ARGYD--LLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G  236 (304)
T ss_dssp             H------H----HHTCS--EEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred             H------H----hCCCC--EEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence            1      0    00000  00000010000    0112246677999999999999999  55566 555543      3


Q ss_pred             HHHHHHHC--CCceEEEEccChhHHhh----------cCEEEEEeCCE
Q 044927          397 QRIIREEF--PGSTVITVAHRVPTITD----------SDMFMVLSYGE  432 (467)
Q Consensus       397 ~~~l~~~~--~~~tvi~itH~l~~~~~----------~d~i~vl~~G~  432 (467)
                      .+.+++..  .+.|+|++||.....+.          --.|..+-.|+
T Consensus       237 ~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge  284 (304)
T 1rj9_A          237 LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE  284 (304)
T ss_dssp             HHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred             HHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence            33333321  27899999997544321          13566676665

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.74  E-value=4.3e-19  Score=197.32  Aligned_cols=157  Identities=11%  Similarity=0.071  Sum_probs=103.1

Q ss_pred             cEEEEeEEEEe-----CCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH
Q 044927          220 RIELEDLKVRY-----RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL  294 (467)
Q Consensus       220 ~i~~~~vs~~y-----~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~  294 (467)
                      .+.+++...-.     +.+...+++|+||++++|++++|+|||||||||++|++.++.-.                    
T Consensus       640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--------------------  699 (918)
T 3thx_B          640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--------------------  699 (918)
T ss_dssp             EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred             cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence            57776643211     11235689999999999999999999999999999999753211                    


Q ss_pred             hcccEEEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          295 RTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      .+.-.++|++..-+  .+.+++.              ...++.+.+.           .+...+|+|++|+..++++ +.
T Consensus       700 aq~g~~vpa~~~~i--~~~d~i~--------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~-a~  751 (918)
T 3thx_B          700 AQIGSYVPAEEATI--GIVDGIF--------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK-AT  751 (918)
T ss_dssp             HHHTCCBSSSEEEE--ECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred             hhcCccccchhhhh--hHHHHHH--------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh-cc
Confidence            01112333322110  0111110              0011111111           1125689999999999999 89


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHH-HHHHHH--CCCceEEEEccChhHHhhcCE
Q 044927          375 RNRILVLDEATASIDSATDAILQ-RIIREE--FPGSTVITVAHRVPTITDSDM  424 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~-~~l~~~--~~~~tvi~itH~l~~~~~~d~  424 (467)
                      +|+++||||||+|+|+.....+. ..++.+  ..|+|+|++||+++....||+
T Consensus       752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~  804 (918)
T 3thx_B          752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN  804 (918)
T ss_dssp             TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence            99999999999999998877776 555544  358999999999988765554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=1.2e-19  Score=186.24  Aligned_cols=165  Identities=16%  Similarity=0.146  Sum_probs=99.2

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      +.|.++||+++|++  ..+++++||+|      +|+||||||||||+++|+|...|..|   .+|.++... ....+..+
T Consensus        10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i   77 (418)
T 2qag_C           10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS   77 (418)
T ss_dssp             -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred             CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence            35899999999964  35899999998      99999999999999999999886655   233332211 11124568


Q ss_pred             EEEcCCCccc-cccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC
Q 044927          299 SIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR  377 (467)
Q Consensus       299 ~~v~Q~~~lf-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~  377 (467)
                      ++++|++.++ ..|+.||+.+.......+.+..     +.+++..              .++.+++||++||||++++|+
T Consensus        78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~  138 (418)
T 2qag_C           78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR  138 (418)
T ss_dssp             ECC------CEEEEEEECC-----------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred             EEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence            9999988776 4599999864322221111111     1122221              245567789999999999999


Q ss_pred             ---EEEeeCCC-CCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927          378 ---ILVLDEAT-ASIDSATDAILQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       378 ---iliLDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                         +|++|||| .+||+... .+   ++.+..+.++|+|.|..+.
T Consensus       139 ~~vlL~ldePt~~~L~~~d~-~~---lk~L~~~v~iIlVinK~Dl  179 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDI-EF---MKRLHEKVNIIPLIAKADT  179 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHH-HH---HHHHTTTSEEEEEEESTTS
T ss_pred             eeEEEEEecCcccCCCHHHH-HH---HHHHhccCcEEEEEEcccC
Confidence               99999999 69998764 23   3334457888888887664

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.74  E-value=4.5e-19  Score=166.82  Aligned_cols=164  Identities=11%  Similarity=0.032  Sum_probs=113.3

Q ss_pred             ceecceeE-EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc---ccEEEcCCCcccccc
Q 044927          236 LVLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGS  311 (467)
Q Consensus       236 ~~L~~isl-~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~t  311 (467)
                      +.|+++.. .+++|++++|+||||||||||++.+++...+.+|.+.+.+.+.   +...++.   .+++.+|+...    
T Consensus        10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----   82 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE----   82 (235)
T ss_dssp             HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred             hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence            46888887 8999999999999999999999999998888888888876543   2333322   34444443211    


Q ss_pred             HHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCC--EEEeeCCCCCC-
Q 044927          312 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNR--ILVLDEATASI-  388 (467)
Q Consensus       312 v~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~--iliLDEpts~L-  388 (467)
                        +++........ .       .+        +.    .+.   ...|.++.++...+.+...+|+  ++++||||+.+ 
T Consensus        83 --~~~~~~~~~~~-~-------~~--------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~  137 (235)
T 2w0m_A           83 --KKLIIIDALMK-E-------KE--------DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL  137 (235)
T ss_dssp             --TTEEEEECCC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred             --CCEEEEecccc-c-------cC--------ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence              11111001100 0       00        00    000   1348999988888888778999  99999999888 


Q ss_pred             -CHHHHHHHHHHHHHHC--CCceEEEEccCh--------hHHhh-cCEEEEEeCC
Q 044927          389 -DSATDAILQRIIREEF--PGSTVITVAHRV--------PTITD-SDMFMVLSYG  431 (467)
Q Consensus       389 -D~~~~~~i~~~l~~~~--~~~tvi~itH~l--------~~~~~-~d~i~vl~~G  431 (467)
                       |+.....+.+.|++..  .++|+|+++|..        ..+.. ||+|++|++.
T Consensus       138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence             9988888888887752  489999999998        34554 9999999865

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.72  E-value=1.1e-18  Score=164.41  Aligned_cols=143  Identities=15%  Similarity=0.121  Sum_probs=103.1

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cH----HH
Q 044927          242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV----RT  314 (467)
Q Consensus       242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv----~e  314 (467)
                      .-..++|++++|+||||||||||+++|+|+++|  .+|.|.+.+.+...    ..++.++|+||++.+|.. ++    .|
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E   85 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE   85 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence            346799999999999999999999999999986  68999998876532    235679999999988865 55    46


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA  394 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~  394 (467)
                      |+.+.+..                        +            |-.+++   ++.++..++++|||     ||+.+..
T Consensus        86 ~~~~~~~~------------------------y------------g~~~~~---v~~~l~~G~illLD-----LD~~~~~  121 (219)
T 1s96_A           86 HAEVFGNY------------------------Y------------GTSREA---IEQVLATGVDVFLD-----IDWQGAQ  121 (219)
T ss_dssp             EEEETTEE------------------------E------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred             HHHHHhcc------------------------C------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence            65432210                        0            000111   23333447999999     9999999


Q ss_pred             HHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHh
Q 044927          395 ILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       395 ~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      .+.+.+.   +++||++++|+++.++.  |+  +.+|    .++++++.
T Consensus       122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~  159 (219)
T 1s96_A          122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA  159 (219)
T ss_dssp             HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred             HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence            9988775   57999999999998876  43  6677    57777775

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.71  E-value=1.8e-19  Score=182.35  Aligned_cols=153  Identities=18%  Similarity=0.139  Sum_probs=114.8

Q ss_pred             EEEeEEEE---eCCCCCcee---------cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC
Q 044927          222 ELEDLKVR---YRPNTPLVL---------KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM  289 (467)
Q Consensus       222 ~~~~vs~~---y~~~~~~~L---------~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~  289 (467)
                      +|+||+|+   |++..+++|         +++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.  .++
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~  214 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL  214 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence            78999998   853223355         9999999999999999999999999999999999999999999985  344


Q ss_pred             CHHHHhcccEEEc-CCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          290 GLKDLRTKLSIIP-QEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       290 ~~~~~r~~i~~v~-Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      .....++.+++++ |++.+                                      |           ++++..++-.|
T Consensus       215 ~~~~~~~~v~~v~~q~~~~--------------------------------------~-----------~~~~~t~~~~i  245 (361)
T 2gza_A          215 FLPDHPNHVHLFYPSEAKE--------------------------------------E-----------ENAPVTAATLL  245 (361)
T ss_dssp             CCTTCSSEEEEECC-----------------------------------------------------------CCHHHHH
T ss_pred             CccccCCEEEEeecCcccc--------------------------------------c-----------cccccCHHHHH
Confidence            4444677889998 65531                                      0           12333477888


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC-CceEEEEccChhHHhhcCEEEEEeCCE
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEFP-GSTVITVAHRVPTITDSDMFMVLSYGE  432 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~d~i~vl~~G~  432 (467)
                      ++++..+|+.+++|||..+       ...+.++.... ..|++..+|..+....+||+..+..|.
T Consensus       246 ~~~l~~~pd~~l~~e~r~~-------~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          246 RSCLRMKPTRILLAELRGG-------EAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN  303 (361)
T ss_dssp             HHHTTSCCSEEEESCCCST-------HHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred             HHHHhcCCCEEEEcCchHH-------HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence            8888899999999999862       34445555433 357899999987666789988887763

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.71  E-value=3.1e-17  Score=148.46  Aligned_cols=79  Identities=24%  Similarity=0.277  Sum_probs=70.6

Q ss_pred             CCCCChhHHHHHHHHHHhc----CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE--
Q 044927          355 GENWSVGQRQLFCLGRVLL----KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL--  428 (467)
Q Consensus       355 g~~LSgGq~Qrl~iARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl--  428 (467)
                      ...||||||||++|||+++    ++|+++||||||++||+.++..+.+.|++..++.++|+|||+......||+++.+  
T Consensus        62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~  141 (173)
T 3kta_B           62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM  141 (173)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence            3679999999999999996    5579999999999999999999999999987788999999999988889999855  


Q ss_pred             eCCEE
Q 044927          429 SYGEL  433 (467)
Q Consensus       429 ~~G~i  433 (467)
                      ++|..
T Consensus       142 ~~g~s  146 (173)
T 3kta_B          142 RDGVS  146 (173)
T ss_dssp             ETTEE
T ss_pred             cCCEE
Confidence            46643

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.69  E-value=4.2e-18  Score=187.65  Aligned_cols=152  Identities=10%  Similarity=0.060  Sum_probs=100.4

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cH
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SV  312 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv  312 (467)
                      ..+++|+||+ ++|++++|+|||||||||++|+++|+..+ ..|      ..+..     -+..+++++|   +|.. ++
T Consensus       595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~~~i~~~~~---i~~~~~~  659 (800)
T 1wb9_A          595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QKVEIGPIDR---IFTRVGA  659 (800)
T ss_dssp             CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SEEEECCCCE---EEEEEC-
T ss_pred             ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hcccceeHHH---HHhhCCH
Confidence            4589999999 99999999999999999999999997432 222      11110     0233555544   3321 33


Q ss_pred             HHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHH
Q 044927          313 RTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSAT  392 (467)
Q Consensus       313 ~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~  392 (467)
                      .||+..                           ++        ..+|+|+++ ++.+...+.+|+++|||||++|+|+..
T Consensus       660 ~d~l~~---------------------------~~--------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d  703 (800)
T 1wb9_A          660 ADDLAS---------------------------GR--------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD  703 (800)
T ss_dssp             ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred             HHHHHh---------------------------hh--------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence            343311                           00        235667665 444445689999999999999999865


Q ss_pred             HHHH-HHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEec
Q 044927          393 DAIL-QRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYD  437 (467)
Q Consensus       393 ~~~i-~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g  437 (467)
                      ...+ ...++.+.  .++|+|++||+.+....||++..+++|++....
T Consensus       704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~  751 (800)
T 1wb9_A          704 GLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE  751 (800)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence            5443 55555542  489999999999887778887777777765443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.69  E-value=3.3e-18  Score=174.95  Aligned_cols=180  Identities=14%  Similarity=0.142  Sum_probs=114.1

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      .+++++ +++|++  .+ |+++||++++|++  +||+||||||||||+++|+|+.        ++|.++....+...++.
T Consensus        16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~   83 (427)
T 2qag_B           16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS   83 (427)
T ss_dssp             -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred             eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence            466666 788853  34 9999999999999  9999999999999999999984        45555544334444668


Q ss_pred             cEEEcCCCcccc-ccHHHhcCcCCCCCHHHHHH----HHHHcChHHHHHhC-------CCccccc-------ccCCCCCC
Q 044927          298 LSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWE----AMEKCQLKATISRL-------PMLLDSS-------VSDEGENW  358 (467)
Q Consensus       298 i~~v~Q~~~lf~-~tv~enl~~~~~~~~~~~~~----~~~~~~l~~~i~~l-------~~g~~t~-------v~~~g~~L  358 (467)
                      ++|++|++.++. .|+.||+.+....+....+.    .++. ....++...       +..-|+.       +-+.+..|
T Consensus        84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l  162 (427)
T 2qag_B           84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL  162 (427)
T ss_dssp             EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred             EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence            999999998874 59999997654333221111    1111 122222221       1112222       12344566


Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH-HC-CCceEEEEccC
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE-EF-PGSTVITVAHR  415 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~  415 (467)
                      +...   +.++++|..+++++++|||+..|.+.....+.+.+++ +. .|.+++.++.+
T Consensus       163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            7665   7999999999999999999999999877778888876 43 47888888864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.65  E-value=5.3e-17  Score=158.23  Aligned_cols=151  Identities=14%  Similarity=0.123  Sum_probs=96.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC-cCCCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD-PLGMY  322 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~-~~~~~  322 (467)
                      .+++|++++|+||||||||||++.+++...  .|++ +.|.+...      +..+.|+..+...  ..+..++. .....
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~   94 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL   94 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence            378999999999999999999999998664  4666 33543211      2356777655432  11222221 11122


Q ss_pred             CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC--CCCHHHH---HHHH
Q 044927          323 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA--SIDSATD---AILQ  397 (467)
Q Consensus       323 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts--~LD~~~~---~~i~  397 (467)
                      ......+.++...           +....+.....||+||+|++   |+++.+|+++|+||||+  ++|+...   ..+.
T Consensus        95 ~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~  160 (279)
T 1nlf_A           95 SAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI  160 (279)
T ss_dssp             CHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred             ChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence            2333333333322           22223445678999998865   68889999999999999  9997543   6677


Q ss_pred             HHHHHHC--CCceEEEEccChhHH
Q 044927          398 RIIREEF--PGSTVITVAHRVPTI  419 (467)
Q Consensus       398 ~~l~~~~--~~~tvi~itH~l~~~  419 (467)
                      +.|+++.  .++|+|+++|.....
T Consensus       161 ~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          161 GRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             HHHHHHHHHHCCEEEEEEEC----
T ss_pred             HHHHHHHHHcCCEEEEEecCCCcc
Confidence            7777653  389999999987654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.64  E-value=3e-18  Score=156.93  Aligned_cols=139  Identities=15%  Similarity=0.075  Sum_probs=89.0

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYS  323 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~  323 (467)
                      .+++|++++|+|||||||||+++.|+|.  |+.|.|.++|.++....  ..++.++|++|++. ...++.+|+...    
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~----   75 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADV----   75 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHH----
Confidence            4789999999999999999999999998  78899999987653221  11344678888664 345777877421    


Q ss_pred             HHHHHHHHHHcChHHHHHhCC--Cccccc--ccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHH
Q 044927          324 DNEIWEAMEKCQLKATISRLP--MLLDSS--VSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI  399 (467)
Q Consensus       324 ~~~~~~~~~~~~l~~~i~~l~--~g~~t~--v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~  399 (467)
                       ..  .... .+....++...  .+++..  .+.....+|+|++||+++||++.++|+++        +|+...+.+.+.
T Consensus        76 -~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~  143 (191)
T 1zp6_A           76 -AG--RYAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ  143 (191)
T ss_dssp             -HH--HHHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred             -HH--HHhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence             00  0010 00000000000  011100  02233579999999999999999999876        588777777666


Q ss_pred             HHHH
Q 044927          400 IREE  403 (467)
Q Consensus       400 l~~~  403 (467)
                      ++..
T Consensus       144 ~~~l  147 (191)
T 1zp6_A          144 FADL  147 (191)
T ss_dssp             TTCC
T ss_pred             Hhcc
Confidence            6543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.63  E-value=9.2e-18  Score=166.89  Aligned_cols=153  Identities=20%  Similarity=0.187  Sum_probs=106.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC--------CCCccEEEEcCEeCCCCC---------------HHHHhcccEEE---c
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV--------EPENGRILIDGLDICSMG---------------LKDLRTKLSII---P  302 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~--------~p~~G~i~i~g~~i~~~~---------------~~~~r~~i~~v---~  302 (467)
                      ++++|+|+||||||||++.|+|+.        .|+.|+|.+||.++...+               ..++++.++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            689999999999999999999998        789999999999987653               34567788888   7


Q ss_pred             CCCcc-ccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCC-CcccccccC-----CCCCCChhHHHHHHHHHHhcCC
Q 044927          303 QEPTL-FRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLP-MLLDSSVSD-----EGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       303 Q~~~l-f~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~-~g~~t~v~~-----~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |++.+ |..++.||..+.   ....+.+.+..  -.+.-...+ .+.-+.++-     .-.++|+||+||+..+++++.+
T Consensus        85 q~~~~~~~~~v~E~~~l~---~p~~~~~~~~~--~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k  159 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMA---DPGPIIQTFFS--HEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK  159 (318)
T ss_dssp             HHTSCCCSEEEEEEETTC---CHHHHHHHHHH--SHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred             hcCCCCCCEEEEeCCCCC---CHHHHHHHHhc--CccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence            87764 567999998642   12222111100  000000000 001111110     0025899999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChh
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVP  417 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~  417 (467)
                      |+++  |||         ..+.+.+++..++.|++++||+..
T Consensus       160 ~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~  190 (318)
T 1nij_A          160 TDVA--GEA---------EKLHERLARINARAPVYTVTHGDI  190 (318)
T ss_dssp             TTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred             cccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence            9987  998         677777877777899999999643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.62  E-value=1.3e-18  Score=170.58  Aligned_cols=129  Identities=10%  Similarity=0.038  Sum_probs=90.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC----C
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG----M  321 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~----~  321 (467)
                      +++.+++|+|++|||||||++.|.+++++. |      .        . ++.+.+|+||+++|+.++++|+.+..    .
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l   92 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL   92 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence            357899999999999999999999999863 2      0        1 44566669999999999999874210    0


Q ss_pred             CCHHHHHHHHHHcChHHHHHhCCCccccc------ccCCCCCCChhHHHHHHHH--HHhcCCCCEEEeeCCCCCCCHHH
Q 044927          322 YSDNEIWEAMEKCQLKATISRLPMLLDSS------VSDEGENWSVGQRQLFCLG--RVLLKRNRILVLDEATASIDSAT  392 (467)
Q Consensus       322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~------v~~~g~~LSgGq~Qrl~iA--Ral~~~p~iliLDEpts~LD~~~  392 (467)
                      .......++.+...+.+++..++.|++|.      +...+..+||||+||+++|  |++  +|+|+|+|||++++|+..
T Consensus        93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A           93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence            00000001111223566788888887653      4556789999999999998  555  999999999999999853

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.62  E-value=6.8e-16  Score=144.02  Aligned_cols=150  Identities=18%  Similarity=0.091  Sum_probs=95.7

Q ss_pred             eecceeE-EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          237 VLKGITC-TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       237 ~L~~isl-~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      .|+++.. .+++|++++|+||||||||||++.+++  .+..+.++++..+  ..+...+++                  .
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~------------------~   65 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ------------------M   65 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH------------------H
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH------------------H
Confidence            5666665 689999999999999999999999999  4334444444321  112222111                  1


Q ss_pred             cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChh--HHHHHHHHHHhcCC-CCEEEeeCCCCCCCHHH
Q 044927          316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG--QRQLFCLGRVLLKR-NRILVLDEATASIDSAT  392 (467)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgG--q~Qrl~iARal~~~-p~iliLDEpts~LD~~~  392 (467)
                      .... ....++            ..+.+.      +    ..+|++  ++|+++.+|+++.+ |+++|+||||+.+|+..
T Consensus        66 ~~~~-~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~  122 (220)
T 2cvh_A           66 AETR-GLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE  122 (220)
T ss_dssp             HHTT-TCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred             HHhc-CCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence            1000 011111            111111      1    123444  36789999999986 99999999999999743


Q ss_pred             H--------HHHHHHHHHHC--CCceEEEEccChh-------------HHh-hcCEEEEEeCC
Q 044927          393 D--------AILQRIIREEF--PGSTVITVAHRVP-------------TIT-DSDMFMVLSYG  431 (467)
Q Consensus       393 ~--------~~i~~~l~~~~--~~~tvi~itH~l~-------------~~~-~~d~i~vl~~G  431 (467)
                      +        ..+.+.|++..  .++|+|+++|...             .++ .||++++|++.
T Consensus       123 ~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          123 NRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             GSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            2        33444455543  2789999999765             344 49999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.61  E-value=6.7e-16  Score=146.32  Aligned_cols=146  Identities=18%  Similarity=0.231  Sum_probs=89.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCC-----CccEEEEcCEeCCC-CCHHHHhcccEEEcCCCccccccHHHh
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFR--LVEP-----ENGRILIDGLDICS-MGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p-----~~G~i~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      .+++|++++|+||||||||||++.+++  ..+|     ..|.+++++.+... .....+++++++.+|+       +.+|
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~   92 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN   92 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence            489999999999999999999999999  5665     67889998865211 1122344456665543       4556


Q ss_pred             cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCCCHH--
Q 044927          316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASIDSA--  391 (467)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~LD~~--  391 (467)
                      +.+....+.++..+.+                                   .-++.++  .+|+++++|||++.+|+.  
T Consensus        93 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~lliiD~~~~~~~~~~~  137 (243)
T 1n0w_A           93 VAYARAFNTDHQTQLL-----------------------------------YQASAMMVESRYALLIVDSATALYRTDYS  137 (243)
T ss_dssp             EEEEECCSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred             eEEEecCCHHHHHHHH-----------------------------------HHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence            5432222222222111                                   1111111  689999999999999985  


Q ss_pred             -----HH-----HHHHHHHHHHC--CCceEEEEccChhHH-------------------h-hcCEEEEEeCC
Q 044927          392 -----TD-----AILQRIIREEF--PGSTVITVAHRVPTI-------------------T-DSDMFMVLSYG  431 (467)
Q Consensus       392 -----~~-----~~i~~~l~~~~--~~~tvi~itH~l~~~-------------------~-~~d~i~vl~~G  431 (467)
                           .+     ..+...+.+..  .++|+|+++|.....                   . .||++++|+.|
T Consensus       138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence                 32     23344444432  389999999965432                   2 48999999875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.60  E-value=2e-18  Score=158.17  Aligned_cols=166  Identities=14%  Similarity=0.034  Sum_probs=105.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc-cccHHHhcCcCCCCCHHH
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNE  326 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~enl~~~~~~~~~~  326 (467)
                      |++++|+|||||||||+++.|++   |.+|.+.++|.++...      ...++++|....+ ..++++|+...       
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-------   65 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL-------   65 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence            68999999999999999999997   6789999998654321      2467777765333 33666666310       


Q ss_pred             HHHHHHHcChHHHHHhCCCcccccccC----CCCCC--ChhHHHHHHHHH------HhcCCCCEEEeeCCCCCCCHHHHH
Q 044927          327 IWEAMEKCQLKATISRLPMLLDSSVSD----EGENW--SVGQRQLFCLGR------VLLKRNRILVLDEATASIDSATDA  394 (467)
Q Consensus       327 ~~~~~~~~~l~~~i~~l~~g~~t~v~~----~g~~L--SgGq~Qrl~iAR------al~~~p~iliLDEpts~LD~~~~~  394 (467)
                      ...... .+       .+.-++...+.    .-..+  |+|++|++.++.      +++.+|+...+|+   ++|+....
T Consensus        66 ~~~~~~-~~-------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~  134 (189)
T 2bdt_A           66 TVNFLL-AQ-------NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE  134 (189)
T ss_dssp             HHHHHH-TT-------CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred             HHHHHh-cC-------CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence            000100 00       00001110000    00124  888888888888      8888888888884   89998777


Q ss_pred             HHHHHHHHHC-CCceEEEEccC-hhHHhh-cCEEEEEeCCEEEEecChhhHh
Q 044927          395 ILQRIIREEF-PGSTVITVAHR-VPTITD-SDMFMVLSYGELVEYDLPSKLM  443 (467)
Q Consensus       395 ~i~~~l~~~~-~~~tvi~itH~-l~~~~~-~d~i~vl~~G~iv~~g~~~~l~  443 (467)
                      . ++.+.... .+.++|.+||. ++.++. ||+|+  ++|+++..|+++-+-
T Consensus       135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~  183 (189)
T 2bdt_A          135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE  183 (189)
T ss_dssp             H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred             H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence            7 77777754 36899999999 998876 99998  999999999987653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.59  E-value=2.2e-18  Score=160.67  Aligned_cols=133  Identities=15%  Similarity=0.165  Sum_probs=94.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC--C-
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG--M-  321 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~--~-  321 (467)
                      .++|++++|+||||||||||+++|+|+++|. |                  ..+++|+++.+.+..+..+|+....  . 
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~   79 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA   79 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence            5789999999999999999999999999875 4                  2467777877777666666653110  1 


Q ss_pred             ---CCHHHHHHHHHHcChHHHHHhCCCc--ccccccCCCCCCChhHHHHHHHH-HHhcCCCCEEEeeCCCCCCCHHHHHH
Q 044927          322 ---YSDNEIWEAMEKCQLKATISRLPML--LDSSVSDEGENWSVGQRQLFCLG-RVLLKRNRILVLDEATASIDSATDAI  395 (467)
Q Consensus       322 ---~~~~~~~~~~~~~~l~~~i~~l~~g--~~t~v~~~g~~LSgGq~Qrl~iA-Ral~~~p~iliLDEpts~LD~~~~~~  395 (467)
                         ...+.         +.+++..++.|  +++.+.+.+..+|+||+||+++| |+++.++.++++|||..         
T Consensus        80 ~~~~~~~~---------~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~---------  141 (208)
T 3c8u_A           80 PETFDFEG---------FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW---------  141 (208)
T ss_dssp             GGGBCHHH---------HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG---------
T ss_pred             CchhhHHH---------HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh---------
Confidence               11122         22233333333  67778889999999999999998 89899998888999842         


Q ss_pred             HHHHHHHHCCCceEEEEccChhH
Q 044927          396 LQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       396 i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                        ..+.+..  ..+|++.+..+.
T Consensus       142 --~~l~~~~--d~~i~vd~~~~~  160 (208)
T 3c8u_A          142 --RDLTAIW--DVSIRLEVPMAD  160 (208)
T ss_dssp             --GGGGGTC--SEEEEECCCHHH
T ss_pred             --HHHHHhc--CEEEEEeCCHHH
Confidence              0112221  367778777765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.57  E-value=3.1e-18  Score=171.56  Aligned_cols=177  Identities=18%  Similarity=0.214  Sum_probs=115.8

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhc
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDLRT  296 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~  296 (467)
                      ++++|+++.|+.  ..+|+++|+++++|++++|+||||||||||++.|+|++.|++|+|.+.|.++.....    ...|.
T Consensus        30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~  107 (337)
T 2qm8_A           30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT  107 (337)
T ss_dssp             HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred             HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence            445566667742  348999999999999999999999999999999999999999999999988754321    23467


Q ss_pred             ccEEEcCCCccccc----------c---HHHhc--------C--c---CC-CCCHHHHHHHHHH-------------cCh
Q 044927          297 KLSIIPQEPTLFRG----------S---VRTNL--------D--P---LG-MYSDNEIWEAMEK-------------CQL  336 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~----------t---v~enl--------~--~---~~-~~~~~~~~~~~~~-------------~~l  336 (467)
                      ++++++|++.+|..          |   ++|.+        .  +   .+ ..++..+.+.++.             ..+
T Consensus       108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i  187 (337)
T 2qm8_A          108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI  187 (337)
T ss_dssp             GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred             hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence            89999999988741          1   11111        0  0   00 0011111100000             000


Q ss_pred             HHHHHhCCCcc-cccccC-CCCCCChhHHHHHHHHHHhcC------CCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927          337 KATISRLPMLL-DSSVSD-EGENWSVGQRQLFCLGRVLLK------RNRILVLDEATASIDSATDAILQRIIREE  403 (467)
Q Consensus       337 ~~~i~~l~~g~-~t~v~~-~g~~LSgGq~Qrl~iARal~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~  403 (467)
                      ...+...|.-+ -+.++. ....+|+|++|++..|++++.      +|+++.    ||++|......+.+.|.+.
T Consensus       188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence            00011112110 011111 124579999999999999997      688876    9999999988888888764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.53  E-value=1.6e-16  Score=151.82  Aligned_cols=147  Identities=14%  Similarity=0.084  Sum_probs=94.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhcCc----
Q 044927          247 EGTRVGVVGRTGSGKTTLISALF---RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDP----  318 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~---gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~----  318 (467)
                      ++++++|+|||||||||++++|+   |+..|+.|+|.++|.+..    ..+...++.++|++.+++ .++.+|+..    
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~  101 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN  101 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999999   999999999998876532    123445666778776654 477777632    


Q ss_pred             -------C-C-CCCHHHHHHHHH--HcChHHHHHhCCC-cccccccCCCCCCChhHHHHHHHHHHh-cCCCCEEEee---
Q 044927          319 -------L-G-MYSDNEIWEAME--KCQLKATISRLPM-LLDSSVSDEGENWSVGQRQLFCLGRVL-LKRNRILVLD---  382 (467)
Q Consensus       319 -------~-~-~~~~~~~~~~~~--~~~l~~~i~~l~~-g~~t~v~~~g~~LSgGq~Qrl~iARal-~~~p~iliLD---  382 (467)
                             . + ....++.....+  ..++.-+++.-|. .++.........|||    |+   ||+ +.+|++++||   
T Consensus       102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~  174 (246)
T 2bbw_A          102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT  174 (246)
T ss_dssp             CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred             cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence                   0 1 011222111111  1110000000000 011111223356898    56   888 9999999999   


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHC
Q 044927          383 -EATASIDSATDAILQRIIREEF  404 (467)
Q Consensus       383 -Epts~LD~~~~~~i~~~l~~~~  404 (467)
                       |||+++|+.++..+.+.+++..
T Consensus       175 ~EP~~~ld~~~~~~i~~~l~~~~  197 (246)
T 2bbw_A          175 GEPLVQQEDDKPEAVAARLRQYK  197 (246)
T ss_dssp             CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred             ccccccCCCCcHHHHHHHHHHHH
Confidence             9999999999988888887753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.51  E-value=4.5e-16  Score=138.86  Aligned_cols=86  Identities=16%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcC
Q 044927          224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ  303 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q  303 (467)
                      +|+++.|++  ..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++...  ...+   .+++|
T Consensus        11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q   82 (158)
T 1htw_A           11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY   82 (158)
T ss_dssp             HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred             HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence            455667742  35899999999999999999999999999999999999 9999999999877421  1112   27999


Q ss_pred             CCccccccHHHhcC
Q 044927          304 EPTLFRGSVRTNLD  317 (467)
Q Consensus       304 ~~~lf~~tv~enl~  317 (467)
                      ++.+|..|+.||+.
T Consensus        83 ~~~l~~ltv~e~l~   96 (158)
T 1htw_A           83 HFDLYRLADPEELE   96 (158)
T ss_dssp             EEECTTCSCTTHHH
T ss_pred             ccccccCCcHHHHH
Confidence            99888768888884

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.50  E-value=1.2e-14  Score=145.83  Aligned_cols=139  Identities=20%  Similarity=0.256  Sum_probs=79.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHHHH
Q 044927          250 RVGVVGRTGSGKTTLISALFR-LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIW  328 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~~~  328 (467)
                      .+.|.||+|+||||+++.++| ++.|+.|.+.++|.+.....  ..+..+++++|.+++.-..    -. .+......+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~  110 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITP----SD-MGNNDRIVIQ  110 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecH----hh-cCCcchHHHH
Confidence            389999999999999999999 89999999999998765322  2366799999987652110    00 0111111233


Q ss_pred             HHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCce
Q 044927          329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGST  408 (467)
Q Consensus       329 ~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t  408 (467)
                      +.++.+     ....  +++..+     .|||           +..+|+++|+|||++ ||+.+...+.+.+.+..++++
T Consensus       111 ~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~  166 (354)
T 1sxj_E          111 ELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR  166 (354)
T ss_dssp             HHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred             HHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence            332221     1111  111111     4566           778999999999999 999999999999998777899


Q ss_pred             EEEEccChhHH
Q 044927          409 VITVAHRVPTI  419 (467)
Q Consensus       409 vi~itH~l~~~  419 (467)
                      +|++||+++.+
T Consensus       167 ~Il~t~~~~~l  177 (354)
T 1sxj_E          167 LIMVCDSMSPI  177 (354)
T ss_dssp             EEEEESCSCSS
T ss_pred             EEEEeCCHHHH
Confidence            99999997643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.50  E-value=1.1e-14  Score=150.87  Aligned_cols=154  Identities=17%  Similarity=0.211  Sum_probs=101.2

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHH--HhcccEEEcCCCcccc-c
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG----LKD--LRTKLSIIPQEPTLFR-G  310 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf~-~  310 (467)
                      -+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|.....    ...  .|+.++|++|++.++. .
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            36899999999999999999999999999999999999999999987765431    122  3678999999987654 5


Q ss_pred             cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccC--CCCCCChhHHHHHHHHHHhcC-CC-CEEEeeCCCC
Q 044927          311 SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD--EGENWSVGQRQLFCLGRVLLK-RN-RILVLDEATA  386 (467)
Q Consensus       311 tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~--~g~~LSgGq~Qrl~iARal~~-~p-~iliLDEpts  386 (467)
                      |+++|+.+..            ..+.+-.+      +||. |.  +-.++-.-.+|++.++|++.. .| .+|+..+||+
T Consensus       363 tV~e~l~~a~------------~~~~DvVL------IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt  423 (503)
T 2yhs_A          363 VIFDAIQAAK------------ARNIDVLI------ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST  423 (503)
T ss_dssp             HHHHHHHHHH------------HTTCSEEE------ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred             HHHHHHHHHH------------hcCCCEEE------EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc
Confidence            8888885310            00000000      1110 00  001111223578899998754 46 3555555888


Q ss_pred             CCCHHHHHHHHHHHHHHCCCceEEEEcc
Q 044927          387 SIDSATDAILQRIIREEFPGSTVITVAH  414 (467)
Q Consensus       387 ~LD~~~~~~i~~~l~~~~~~~tvi~itH  414 (467)
                      +.|....   .+.+.+. -+.|.+++||
T Consensus       424 Gq~al~~---ak~f~~~-~~itgvIlTK  447 (503)
T 2yhs_A          424 GQNAVSQ---AKLFHEA-VGLTGITLTK  447 (503)
T ss_dssp             THHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred             cHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence            8665422   2223222 3689999999

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.48  E-value=6.1e-14  Score=142.24  Aligned_cols=74  Identities=22%  Similarity=0.307  Sum_probs=67.3

Q ss_pred             CCCChhHHHHH------HHHHHhcCC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEE
Q 044927          356 ENWSVGQRQLF------CLGRVLLKR-NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       356 ~~LSgGq~Qrl------~iARal~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl  428 (467)
                      ..|||||+||+      ++||++..+ |++|||||||++||+.+...+.+.|.+..++.++|++||+++....||++++|
T Consensus       279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l  358 (371)
T 3auy_A          279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV  358 (371)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence            58999999988      668999999 99999999999999999999999998875567999999999865669999999


Q ss_pred             e
Q 044927          429 S  429 (467)
Q Consensus       429 ~  429 (467)
                      +
T Consensus       359 ~  359 (371)
T 3auy_A          359 K  359 (371)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.48  E-value=3.5e-17  Score=167.99  Aligned_cols=127  Identities=16%  Similarity=0.129  Sum_probs=88.9

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHHHhcccEEEc---------C
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM----GLKDLRTKLSIIP---------Q  303 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~----~~~~~r~~i~~v~---------Q  303 (467)
                      +|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...    +...+++++++.+         |
T Consensus       158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq  235 (418)
T 1p9r_A          158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ  235 (418)
T ss_dssp             HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred             HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence            56666 4 378999999999999999999999999999999999998876321    1223445566655         8


Q ss_pred             CCccc--c-----ccHHHhcCcC--C--------CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH
Q 044927          304 EPTLF--R-----GSVRTNLDPL--G--------MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF  366 (467)
Q Consensus       304 ~~~lf--~-----~tv~enl~~~--~--------~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl  366 (467)
                      +|.++  .     .|+.+++...  +        ..+..+....+...++.++.             ....|||||+|| 
T Consensus       236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR-  301 (418)
T 1p9r_A          236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR-  301 (418)
T ss_dssp             CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred             CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence            88753  2     3778877421  1        01112333344554544332             125799999999 


Q ss_pred             HHHHHhcCCCCEEE
Q 044927          367 CLGRVLLKRNRILV  380 (467)
Q Consensus       367 ~iARal~~~p~ili  380 (467)
                       |||+++.+|++..
T Consensus       302 -LaraL~~~p~~~~  314 (418)
T 1p9r_A          302 -LVRTLCPDCKEPY  314 (418)
T ss_dssp             -EEEEECTTTCEEE
T ss_pred             -hhhhhcCCCCccC
Confidence             9999999999876

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.47  E-value=5.5e-14  Score=143.43  Aligned_cols=147  Identities=16%  Similarity=0.220  Sum_probs=93.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCcc-----EEEEcCEeCC-CCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISA--LFRLVEPENG-----RILIDGLDIC-SMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~--l~gl~~p~~G-----~i~i~g~~i~-~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      -|++|++++|+||||||||||++.  +.+..+|+.|     .+++++.+.. ......+++++++.+|       ++.+|
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen  246 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN  246 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence            589999999999999999999994  4577776444     8889886531 1112234455666554       56677


Q ss_pred             cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh--cCCCCEEEeeCCCCCCCHHHH
Q 044927          316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL--LKRNRILVLDEATASIDSATD  393 (467)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal--~~~p~iliLDEpts~LD~~~~  393 (467)
                      +.+......++..+                                   .+.-++.+  -.+|+++++|||++.+|+...
T Consensus       247 i~~~~~~~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s  291 (400)
T 3lda_A          247 VAYARAYNADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDFS  291 (400)
T ss_dssp             EEEEECCSHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred             EEEeccCChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence            65432222222211                                   11111121  257999999999999997533


Q ss_pred             ------------HHHHHHHHHHC--CCceEEEEccChh-------------------HHhh-cCEEEEEeCCE
Q 044927          394 ------------AILQRIIREEF--PGSTVITVAHRVP-------------------TITD-SDMFMVLSYGE  432 (467)
Q Consensus       394 ------------~~i~~~l~~~~--~~~tvi~itH~l~-------------------~~~~-~d~i~vl~~G~  432 (467)
                                  ..+.+.|+++.  .+.|+|+++|...                   .+.+ +|.+++|++|+
T Consensus       292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence                        44566666543  3899999999821                   2344 89999998763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.46  E-value=1.3e-16  Score=167.88  Aligned_cols=173  Identities=16%  Similarity=0.112  Sum_probs=112.9

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHH
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRT  314 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e  314 (467)
                      .+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+.   +..++++.|...... .|..+
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~  324 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD  324 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence            46889999999999999999999999999999999999999999999865222211   345667776654111 14554


Q ss_pred             hcCc----------CCCCCHHHHHHHHHHc--C-----------hHHHHHhC---CCccccccc-------CCCCCCChh
Q 044927          315 NLDP----------LGMYSDNEIWEAMEKC--Q-----------LKATISRL---PMLLDSSVS-------DEGENWSVG  361 (467)
Q Consensus       315 nl~~----------~~~~~~~~~~~~~~~~--~-----------l~~~i~~l---~~g~~t~v~-------~~g~~LSgG  361 (467)
                      ++..          .+...+.+...+++.+  |           ..+.+.++   |.++...+.       .....+|+|
T Consensus       325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G  404 (511)
T 2oap_1          325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN  404 (511)
T ss_dssp             HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred             HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence            4321          1233333444433332  1           23334333   223222111       123457999


Q ss_pred             HHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEE--EccChhHHhh-cC
Q 044927          362 QRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVIT--VAHRVPTITD-SD  423 (467)
Q Consensus       362 q~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~--itH~l~~~~~-~d  423 (467)
                      |+||.++|.          + | |+|||+.....+.+.+.++. .++|+++  +||+++.+.. |+
T Consensus       405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred             CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence            999987752          1 7 99999988776666666653 3788875  8999998764 64

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.46  E-value=2.2e-14  Score=143.84  Aligned_cols=122  Identities=16%  Similarity=0.074  Sum_probs=80.0

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEEc-CEeCCCCCHHHHhcccEEEcCCCccccc-cHH
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILID-GLDICSMGLKDLRTKLSIIPQEPTLFRG-SVR  313 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p~~G~i~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~  313 (467)
                      -++++++. .+|++++|+||||||||||+|+|+|+.. |.+|+|.++ |.+..    ...+..++++||++.++.. +++
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~  279 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR  279 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence            47777774 5899999999999999999999999999 999999987 76542    1345679999999988865 888


Q ss_pred             HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      ++-..  ..+.+++.+.     ..+++..+  |+....+....+|| ||+||++||++++
T Consensus       280 e~~l~--~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          280 EFGLW--HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             TCCCC--CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred             Hhhhc--CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence            86421  2344443221     12222222  33333444557899 9999999999863

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.46  E-value=4.7e-14  Score=140.39  Aligned_cols=166  Identities=16%  Similarity=0.102  Sum_probs=107.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH----Hhcc--cEEEcCCCccccc-cHHHhc
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----LRTK--LSIIPQEPTLFRG-SVRTNL  316 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~----~r~~--i~~v~Q~~~lf~~-tv~enl  316 (467)
                      ..++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+......+    ++++  +.+++|+..+++. ++++|+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            34789999999999999999999999999999999999999987765432    3333  5599998887754 888888


Q ss_pred             CcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHH
Q 044927          317 DPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL  396 (467)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i  396 (467)
                      ....          ......        .-+||. |.. ..-..=..+.-.++|++..++++++||.+|. .|...   .
T Consensus       205 ~~~~----------~~~~d~--------vliDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~---~  260 (328)
T 3e70_C          205 QHAK----------ARGIDV--------VLIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE---Q  260 (328)
T ss_dssp             HHHH----------HHTCSE--------EEEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH---H
T ss_pred             HHHH----------hccchh--------hHHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH---H
Confidence            4210          000000        001221 100 0011123445569999999999999996655 33322   1


Q ss_pred             HHHHHHHCCCceEEEEccChhH---------Hh-hcCEEEEEeCCEEE
Q 044927          397 QRIIREEFPGSTVITVAHRVPT---------IT-DSDMFMVLSYGELV  434 (467)
Q Consensus       397 ~~~l~~~~~~~tvi~itH~l~~---------~~-~~d~i~vl~~G~iv  434 (467)
                      .+.+.+ ..+.|.|++||--.+         +. ..-.|..+..|+-+
T Consensus       261 ~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          261 ARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             HHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred             HHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence            122222 137899999994432         11 24578888888764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.43  E-value=9.4e-14  Score=122.56  Aligned_cols=91  Identities=21%  Similarity=0.250  Sum_probs=68.8

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT  314 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G--~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  314 (467)
                      +|+++     +|+.++|+||||||||||++++++.+.+ +|  .+++++.++...                         
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~-------------------------   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT-------------------------   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence            45555     8999999999999999999999999987 46  555554322110                         


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHH
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA  394 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~  394 (467)
                                                                              +++.+|++|+||||++ +|+..++
T Consensus        79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~  101 (149)
T 2kjq_A           79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA  101 (149)
T ss_dssp             --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred             --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence                                                                    2356899999999998 6655577


Q ss_pred             HHHHHHHHHC-CCce-EEEEccC
Q 044927          395 ILQRIIREEF-PGST-VITVAHR  415 (467)
Q Consensus       395 ~i~~~l~~~~-~~~t-vi~itH~  415 (467)
                      .+.+.+.... ++++ +|++||+
T Consensus       102 ~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A          102 LLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HHHHHHHHHHHcCCcEEEEECCC
Confidence            8888887754 3677 8888885

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.42  E-value=1.1e-13  Score=125.58  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=74.6

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCC
Q 044927          242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM  321 (467)
Q Consensus       242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~  321 (467)
                      ++++++|+.++|+||||+|||||++++++.+.|.+|...                  .|+         +..+.+     
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~~~~-----   79 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTKDLI-----   79 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHHHHH-----
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHHHHH-----
Confidence            467788999999999999999999999999876665210                  010         111111     


Q ss_pred             CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC-CCCHHHHHHHHHHH
Q 044927          322 YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA-SIDSATDAILQRII  400 (467)
Q Consensus       322 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts-~LD~~~~~~i~~~l  400 (467)
                         +++.....         .   +          ...        -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus        80 ---~~~~~~~~---------~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll  126 (180)
T 3ec2_A           80 ---FRLKHLMD---------E---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII  126 (180)
T ss_dssp             ---HHHHHHHH---------H---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred             ---HHHHHHhc---------C---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence               01111100         0   0          000        0112234899999999995 89999999999988


Q ss_pred             HHHC-CCceEEEEccChh
Q 044927          401 REEF-PGSTVITVAHRVP  417 (467)
Q Consensus       401 ~~~~-~~~tvi~itH~l~  417 (467)
                      .... +++++|++||...
T Consensus       127 ~~~~~~~~~ii~tsn~~~  144 (180)
T 3ec2_A          127 TYRYNNLKSTIITTNYSL  144 (180)
T ss_dssp             HHHHHTTCEEEEECCCCS
T ss_pred             HHHHHcCCCEEEEcCCCh
Confidence            7754 6899999999764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.41  E-value=6.6e-16  Score=150.27  Aligned_cols=144  Identities=17%  Similarity=0.111  Sum_probs=103.0

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC-cccc-ccHH
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP-TLFR-GSVR  313 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~  313 (467)
                      .+++++++++++|  ++|+||||||||||+++|+|.+.+  |.|.++|.++......+.++.+++++|++ ..++ -++.
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~  109 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF  109 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence            4789999999999  999999999999999999999887  79999998887655566677899999986 3333 3678


Q ss_pred             HhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC-------
Q 044927          314 TNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA-------  386 (467)
Q Consensus       314 enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts-------  386 (467)
                      ||+..........  .. .  .......+++           ..|||||+||+.+++|+..+|++|  |||+.       
T Consensus       110 Deid~~~~~r~~~--~~-~--~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~  171 (274)
T 2x8a_A          110 DEVDALCPRRSDR--ET-G--ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK  171 (274)
T ss_dssp             ETCTTTCC--------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred             ehhhhhhcccCCC--cc-h--HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence            8886432111100  00 0  0111122221           358999999999999999999975  99975       


Q ss_pred             -----CCCHHHHHHHHHHHH
Q 044927          387 -----SIDSATDAILQRIIR  401 (467)
Q Consensus       387 -----~LD~~~~~~i~~~l~  401 (467)
                           --|...+..|++.+.
T Consensus       172 ~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          172 TLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             EEECCSCCHHHHHHHHHHHT
T ss_pred             EEEeCCcCHHHHHHHHHHHH
Confidence                 226666666666553

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.38  E-value=6.3e-14  Score=138.12  Aligned_cols=114  Identities=16%  Similarity=0.068  Sum_probs=79.8

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHh-cccEEEcCCCccc------cccH
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLR-TKLSIIPQEPTLF------RGSV  312 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~tv  312 (467)
                      +++.+|++++++||||||||||+|+|+ +.+|++|+|.+   +|.++..... ..+ +.+||++|+|.+.      ..|+
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~  237 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP  237 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence            345679999999999999999999999 99999999999   9988765432 222 3699999998542      3478


Q ss_pred             HHhc--CcC---------CC-----CCHHHHHHHHHHcChHH-HHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          313 RTNL--DPL---------GM-----YSDNEIWEAMEKCQLKA-TISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       313 ~enl--~~~---------~~-----~~~~~~~~~~~~~~l~~-~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                       +|+  .+.         ..     .....+.++++..++.+ ..++.|           ..|||.+++++.|||
T Consensus       238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR  300 (302)
T ss_dssp             -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred             -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence             787  221         11     12245778888888864 455544           568998889999987

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.34  E-value=6.9e-15  Score=145.45  Aligned_cols=139  Identities=14%  Similarity=0.168  Sum_probs=94.1

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhcCCC--CCcc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTF-------------------KEGTRVGVVGRTGSGKTTLISALFRLVE--PENG  277 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i-------------------~~Ge~~~ivG~sGsGKSTll~~l~gl~~--p~~G  277 (467)
                      +.|+++||++.|.    ++++++++.+                   ++|+++||+||||||||||+++|+|++.  |++|
T Consensus        36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G  111 (308)
T 1sq5_A           36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR  111 (308)
T ss_dssp             TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred             cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence            4589999999993    4899999988                   8999999999999999999999999998  9999


Q ss_pred             EEEE---cCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccC
Q 044927          278 RILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSD  353 (467)
Q Consensus       278 ~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~  353 (467)
                      +|.+   ||....    ...++.++++ |+..++. .|+.+|+.+..           ....-.. .-..| -++     
T Consensus       112 ~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~-----------~l~~~~~-~i~~P-~~~-----  168 (308)
T 1sq5_A          112 RVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS-----------DLKSGVP-NVTAP-VYS-----  168 (308)
T ss_dssp             CEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH-----------HHTTTCS-CEEEC-CEE-----
T ss_pred             eEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH-----------HHhCCCC-ceecc-ccc-----
Confidence            9999   887642    2345668888 7665543 36666653210           0000000 00111 111     


Q ss_pred             CCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCH
Q 044927          354 EGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS  390 (467)
Q Consensus       354 ~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~  390 (467)
                          .+.+  +|+..+.+.+.+|+++|+|.|....++
T Consensus       169 ----~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~  199 (308)
T 1sq5_A          169 ----HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG  199 (308)
T ss_dssp             ----TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred             ----cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence                1222  233333355678999999999988774

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.30  E-value=7.1e-13  Score=130.54  Aligned_cols=101  Identities=13%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHhcccEEEcCCCc-------------
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPT-------------  306 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~-------------  306 (467)
                      |++.+|++++|+||||||||||+++|+|+.+|++|+|.+   +|.++.........+.+++|+|.|.             
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            456789999999999999999999999999999999999   9998876542211246999999984             


Q ss_pred             ---cccc-cHHHhcCcCC----CCCHHHHHHHHHHcCh-HHHHHhCC
Q 044927          307 ---LFRG-SVRTNLDPLG----MYSDNEIWEAMEKCQL-KATISRLP  344 (467)
Q Consensus       307 ---lf~~-tv~enl~~~~----~~~~~~~~~~~~~~~l-~~~i~~l~  344 (467)
                         +|+. |+ +|+.+..    ......+.++++..++ .+..++.|
T Consensus       244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~  289 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV  289 (301)
T ss_dssp             HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence               3543 77 8887532    1223568889999999 46666666

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.30  E-value=2.4e-13  Score=139.36  Aligned_cols=152  Identities=15%  Similarity=0.218  Sum_probs=91.8

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      -++++|+++.|+.++|+|+||||||||++.|+|..+      .+.+.+...+     ...+++++++.. ...++.|+..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG  214 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG  214 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence            478999999999999999999999999999999853      3444443332     345777777641 1112233221


Q ss_pred             cC------CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHH
Q 044927          318 PL------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSA  391 (467)
Q Consensus       318 ~~------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~  391 (467)
                      +.      ..... ...+..+.+..  .+..    +|-. .+...+||+|++|++++|++|..+|.++++    +.+|+.
T Consensus       215 li~~a~~~~~L~~-~fl~~~era~~--lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~  282 (416)
T 1udx_A          215 IIEGASEGKGLGL-EFLRHIARTRV--LLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL  282 (416)
T ss_dssp             CCCCGGGSCCSCH-HHHHHHTSSSE--EEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred             cccchhhhhhhhH-HHHHHHHHHHh--hhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence            11      01111 11111111110  0100    1110 122356899999999999999999999999    999987


Q ss_pred             HHHHHHHHHHH-H-CCCceEEEEcc
Q 044927          392 TDAILQRIIRE-E-FPGSTVITVAH  414 (467)
Q Consensus       392 ~~~~i~~~l~~-~-~~~~tvi~itH  414 (467)
                      ... ..+.+.+ . ..+.+++.+|.
T Consensus       283 ~~~-~~~~l~~~l~~~g~~vi~iSA  306 (416)
T 1udx_A          283 EEE-AVKALADALAREGLAVLPVSA  306 (416)
T ss_dssp             CHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred             hHH-HHHHHHHHHHhcCCeEEEEEC
Confidence            653 3333333 2 23667766653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.28  E-value=6.6e-15  Score=139.17  Aligned_cols=176  Identities=7%  Similarity=0.084  Sum_probs=70.6

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHH-HHhcccEEEcCCCccccc-cHH
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF-RLVEPENGRILIDGLDICSMGLK-DLRTKLSIIPQEPTLFRG-SVR  313 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-gl~~p~~G~i~i~g~~i~~~~~~-~~r~~i~~v~Q~~~lf~~-tv~  313 (467)
                      ..+++||++++|++++|+||||||||||+++|+ |++++.     .++.++....+. ..+..++|.++++..|.. +..
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~   90 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN   90 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence            578999999999999999999999999999999 998541     222222111111 011234566666655533 333


Q ss_pred             HhcC----cCCC---CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCC--hhHHHHH-HHH-HHhcCCCCEEEee
Q 044927          314 TNLD----PLGM---YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWS--VGQRQLF-CLG-RVLLKRNRILVLD  382 (467)
Q Consensus       314 enl~----~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LS--gGq~Qrl-~iA-Ral~~~p~iliLD  382 (467)
                      +++.    +...   ...+++.+.++...            ...+.   ..+.  ..-++++ .-+ ..++..|+..++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~  155 (231)
T 3lnc_A           91 GEIIEHAEVFGNFYGVPRKNLEDNVDKGV------------STLLV---IDWQGAFKFMEMMREHVVSIFIMPPSMEELR  155 (231)
T ss_dssp             TCEEEEEEETTEEEEEECTTHHHHHHHTC------------EEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHHHHH
T ss_pred             CceehhhhhccccCCCCHHHHHHHHHcCC------------eEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHHHHH
Confidence            3332    1110   11223333333211            00000   0001  1113333 112 2345677888899


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHC------CCceEEEEccChhHHh-hcCEEEEEeCCE
Q 044927          383 EATASIDSATDAILQRIIREEF------PGSTVITVAHRVPTIT-DSDMFMVLSYGE  432 (467)
Q Consensus       383 Epts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~l~~~~-~~d~i~vl~~G~  432 (467)
                      |++.+.|..++..+.+.+....      +....+++.|+++.+. ..++++-..+++
T Consensus       156 ~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~  212 (231)
T 3lnc_A          156 RRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK  212 (231)
T ss_dssp             HC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence            9999999888777766554321      1345666666665433 345544333343

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.23  E-value=4.6e-14  Score=143.40  Aligned_cols=169  Identities=12%  Similarity=0.093  Sum_probs=109.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhc------------CCCCCccEEEEcCEeCCCCCH-HHHhccc---EEEcCCCcc
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFR------------LVEPENGRILIDGLDICSMGL-KDLRTKL---SIIPQEPTL  307 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~g------------l~~p~~G~i~i~g~~i~~~~~-~~~r~~i---~~v~Q~~~l  307 (467)
                      ++++|.+++|+|+||||||||++.|+|            ..+|+.|.+.++|..+..+.. ..-++.+   .++.+.|-+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            457899999999999999999999999            667999999998743211100 0001122   356676666


Q ss_pred             ccc-cHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCC--CEEEeeCC
Q 044927          308 FRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRN--RILVLDEA  384 (467)
Q Consensus       308 f~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p--~iliLDEp  384 (467)
                      ..+ +..+++.       .+....++.+..   +...   ++..-......+||+.            +|  +++++|||
T Consensus        96 ~~~~s~~e~L~-------~~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildee  150 (392)
T 1ni3_A           96 TKGASTGVGLG-------NAFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDE  150 (392)
T ss_dssp             CCCCCSSSSSC-------HHHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred             ccCCcHHHHHH-------HHHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchhh
Confidence            543 3333331       122222222211   0000   0100012233456652            89  99999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH-CC-CceEEEEccChhHHhh-cCEEE-EEeCC-EEEEecCh
Q 044927          385 TASIDSATDAILQRIIREE-FP-GSTVITVAHRVPTITD-SDMFM-VLSYG-ELVEYDLP  439 (467)
Q Consensus       385 ts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~l~~~~~-~d~i~-vl~~G-~iv~~g~~  439 (467)
                      ++.+|+...+..++.++.. .. |.|+  ++|.+..+.. ||++. +|++| +++..|+.
T Consensus       151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            9999999988888888876 44 5564  3999988765 99999 99999 88876653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.20  E-value=5e-12  Score=131.30  Aligned_cols=64  Identities=16%  Similarity=0.160  Sum_probs=55.4

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG  290 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~  290 (467)
                      .+.+++...    ..+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus         8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~   71 (483)
T 3euj_A            8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST   71 (483)
T ss_dssp             EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred             ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence            455555443    1379999999999 999999999999999999999999999999999999887554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.17  E-value=2.3e-11  Score=119.80  Aligned_cols=98  Identities=15%  Similarity=0.204  Sum_probs=72.0

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCC
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLG  320 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~  320 (467)
                      ++++.++|++++++|||||||||++..|++.+.+..|+|.+.+.|....         +            ..       
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a~-------  148 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------AI-------  148 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------HH-------
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------HH-------
Confidence            3445678999999999999999999999999999999999987664210         0            01       


Q ss_pred             CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH---HHHHHhcCCCCEEEeeCCCC
Q 044927          321 MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF---CLGRVLLKRNRILVLDEATA  386 (467)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl---~iARal~~~p~iliLDEpts  386 (467)
                          +++...++..+       +|    . +    ...|+|+.|++   ++++|+..+|+++|+|||..
T Consensus       149 ----eqL~~~~~~~g-------l~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          149 ----EQLKIWGERVG-------AT----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             ----HHHHHHHHHHT-------CE----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ----HHHHHHHHHcC-------Cc----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                11222222211       11    1 1    24589999999   99999999999999999974

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.17  E-value=3.1e-11  Score=118.42  Aligned_cols=139  Identities=15%  Similarity=0.155  Sum_probs=89.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHH
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDN  325 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~  325 (467)
                      ++|++++++|||||||||++..|++.+.+++|                  +++.++.+|++  ..+..+++         
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL---------  153 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL---------  153 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence            47899999999999999999999999988778                  24566666652  22222222         


Q ss_pred             HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-
Q 044927          326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-  404 (467)
Q Consensus       326 ~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-  404 (467)
                        ....+..+       +|    ....     .+ +...+.+++++  ++|+++|+|  |+++|+..+..+.+..+-.. 
T Consensus       154 --~~~~~~~g-------l~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~  210 (296)
T 2px0_A          154 --KTYAELLQ-------AP----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF  210 (296)
T ss_dssp             --HHHHTTTT-------CC----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred             --HHHHHhcC-------CC----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence              11111111       11    1110     12 34456677764  899999999  99999876655554433322 


Q ss_pred             --CCceEEEE--ccChhHHhh-cCEEEEEeCCEEEEe
Q 044927          405 --PGSTVITV--AHRVPTITD-SDMFMVLSYGELVEY  436 (467)
Q Consensus       405 --~~~tvi~i--tH~l~~~~~-~d~i~vl~~G~iv~~  436 (467)
                        .+.+++++  +|..+.+.. ++++..++.|.++..
T Consensus       211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence              33345555  899877765 787777777777764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.17  E-value=3.3e-11  Score=118.18  Aligned_cols=142  Identities=18%  Similarity=0.086  Sum_probs=97.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      +.++++++.|++.  .  ++++|+  +|++++++|+||+||||++..|++++.+..|+|.+.+.|+..-  ...      
T Consensus        77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~~------  142 (295)
T 1ls1_A           77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AAR------  142 (295)
T ss_dssp             HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HHH------
T ss_pred             HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hHH------
Confidence            4556666777432  1  678887  9999999999999999999999999999999999988765421  100      


Q ss_pred             EcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEE
Q 044927          301 IPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILV  380 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~ili  380 (467)
                                   +           ++....+..           |++-...  +......+.+|.+++++...+++++|
T Consensus       143 -------------~-----------ql~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~vi  185 (295)
T 1ls1_A          143 -------------E-----------QLRLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARDLIL  185 (295)
T ss_dssp             -------------H-----------HHHHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred             -------------H-----------HHHHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence                         0           000001111           1111100  01123445678999999889999999


Q ss_pred             eeCC-CCCCCHHHHHHHHHHHHHHCCCceEEEEc
Q 044927          381 LDEA-TASIDSATDAILQRIIREEFPGSTVITVA  413 (467)
Q Consensus       381 LDEp-ts~LD~~~~~~i~~~l~~~~~~~tvi~it  413 (467)
                      +||| ++++|......+.+..+....+.+++++.
T Consensus       186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~  219 (295)
T 1ls1_A          186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD  219 (295)
T ss_dssp             EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence            9999 99999988888877777666676666554

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.15  E-value=6.9e-12  Score=115.55  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc-cHHHhcC
Q 044927          242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLD  317 (467)
Q Consensus       242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~enl~  317 (467)
                      |+++++|++++|+||||||||||+++|+|+++    .+.+++.++...+....+..++|++|++..|.. ++.+|+.
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL   73 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence            57788999999999999999999999999974    588888877766555557789999999988765 6666653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.14  E-value=3.3e-12  Score=125.67  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=43.8

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHhcccEEEcCCCcccc-----ccHHH
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI---DGLDICSMGLKDLRTKLSIIPQEPTLFR-----GSVRT  314 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~e  314 (467)
                      +++.+|++++|+||||||||||+|+|+|+.+|.+|+|.+   +|+++.... ...+..+++++|.|.++.     .|+ |
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e  245 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E  245 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence            566789999999999999999999999999999999999   888776532 122223899999997643     367 7


Q ss_pred             hc
Q 044927          315 NL  316 (467)
Q Consensus       315 nl  316 (467)
                      |+
T Consensus       246 ~l  247 (307)
T 1t9h_A          246 EL  247 (307)
T ss_dssp             HH
T ss_pred             HH
Confidence            77

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.10  E-value=7.9e-15  Score=146.65  Aligned_cols=156  Identities=19%  Similarity=0.193  Sum_probs=94.9

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCC-------cEEEEEcCCCCcHHHHHHHHhcCC----CCCccEEEEcCEeCCCC
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEG-------TRVGVVGRTGSGKTTLISALFRLV----EPENGRILIDGLDICSM  289 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~G-------e~~~ivG~sGsGKSTll~~l~gl~----~p~~G~i~i~g~~i~~~  289 (467)
                      ++.++++..|+.  ..+++++++.+++|       +.++|+||||+|||||+++++|.+    .|.+|.+..++.++...
T Consensus        19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~   96 (334)
T 1in4_A           19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI   96 (334)
T ss_dssp             TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred             cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence            334455555643  34899999999877       899999999999999999999998    67778777666544221


Q ss_pred             CHHHHhcccEEEcCCCccccccHHHhcCcC-CCC--C----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhH
Q 044927          290 GLKDLRTKLSIIPQEPTLFRGSVRTNLDPL-GMY--S----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQ  362 (467)
Q Consensus       290 ~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~-~~~--~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq  362 (467)
                      .....+..|.+++|...++. ++.|++... ...  .    .....   +.  +...+.  +.++.. ...+...||+|+
T Consensus        97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~--~~~li~-at~~~~~Ls~~l  167 (334)
T 1in4_A           97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQ--PFTLVG-ATTRSGLLSSPL  167 (334)
T ss_dssp             HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHH
T ss_pred             HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCC--CeEEEE-ecCCcccCCHHH
Confidence            11111456999999877765 677766310 000  0    00000   00  001111  112211 123345799999


Q ss_pred             HHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927          363 RQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE  403 (467)
Q Consensus       363 ~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~  403 (467)
                      |||++++                .+||+.+...+.+.+++.
T Consensus       168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~  192 (334)
T 1in4_A          168 RSRFGII----------------LELDFYTVKELKEIIKRA  192 (334)
T ss_dssp             HTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred             HHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence            9998654                667777777777777654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.08  E-value=1.5e-12  Score=122.18  Aligned_cols=128  Identities=17%  Similarity=0.193  Sum_probs=92.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC---CCCccEEEE--------cCEeCCC-CCHHHHhcccEEEcCCC------cccc
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV---EPENGRILI--------DGLDICS-MGLKDLRTKLSIIPQEP------TLFR  309 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~---~p~~G~i~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf~  309 (467)
                      +.+++|+||+||||||+.++|++.+   .+++|.+..        +|.++.+ ....++++++++++|++      .++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            5689999999999999999999876   788999987        7876652 34556888999999976      3344


Q ss_pred             ccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccc-cCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCC
Q 044927          310 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSV-SDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATA  386 (467)
Q Consensus       310 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts  386 (467)
                      .++.+++.      ++++..++..+..++.+.....+..+.+ .++|.-++|+     .++++++.+++++|+.+++.
T Consensus        85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~  151 (227)
T 1cke_A           85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS  151 (227)
T ss_dssp             EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred             eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence            45666652      4667777777777777766544444433 2445666776     45667788999999888753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.06  E-value=1.1e-11  Score=113.31  Aligned_cols=142  Identities=17%  Similarity=0.144  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-----------CccEEEEcCEeCCC--CCHHHHhcccEEEcCCCcccc--ccHHH
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEP-----------ENGRILIDGLDICS--MGLKDLRTKLSIIPQEPTLFR--GSVRT  314 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p-----------~~G~i~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~--~tv~e  314 (467)
                      +++|+|+||||||||++.++|...|           .+|+|.++|.++.-  ++....++..++++|...-..  -++.|
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d  110 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD  110 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence            7899999999999999999998765           57999999976531  111112222333333211000  01222


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHH-HhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHH
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATI-SRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD  393 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i-~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~  393 (467)
                      +...   .+.+.+...++.  +.... ...|  . -.++.+ ..|..-..+...+||+++.+|+++++|  ||++|+...
T Consensus       111 ~~~~---~s~~~~~~~~~~--~~~~~~~~~~--i-~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v  179 (191)
T 1oix_A          111 IAKH---LTYENVERWLKE--LRDHADSNIV--I-MLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV  179 (191)
T ss_dssp             TTCH---HHHHTHHHHHHH--HHHHSCTTCE--E-EEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred             CcCH---HHHHHHHHHHHH--HHHhcCCCCc--E-EEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence            2110   000111111110  00000 0011  0 011111 112222223478899999999999999  999999998


Q ss_pred             HHHHHHHHH
Q 044927          394 AILQRIIRE  402 (467)
Q Consensus       394 ~~i~~~l~~  402 (467)
                      ..+.+.|.+
T Consensus       180 ~~l~~~l~~  188 (191)
T 1oix_A          180 EAAFQTILT  188 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.04  E-value=2.2e-11  Score=116.69  Aligned_cols=72  Identities=25%  Similarity=0.257  Sum_probs=61.6

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEE--------EcCEeCC-CCCHHHHhcccEEEcCCC------cc
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDIC-SMGLKDLRTKLSIIPQEP------TL  307 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~---gl~~p~~G~i~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l  307 (467)
                      ++|++++|+|||||||||++++|+   |++.|++|.++        .+|.++. ......+++.+++++|.+      .+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL  104 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence            789999999999999999999999   99999999999        9999884 445778899999999753      45


Q ss_pred             ccccHHHhcC
Q 044927          308 FRGSVRTNLD  317 (467)
Q Consensus       308 f~~tv~enl~  317 (467)
                      +..++.+|+.
T Consensus       105 ~~~~v~~~i~  114 (252)
T 4e22_A          105 EGEDVSNEIR  114 (252)
T ss_dssp             TTEECTTGGG
T ss_pred             CCeehhHHHH
Confidence            5567777764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.03  E-value=3.6e-13  Score=130.89  Aligned_cols=136  Identities=18%  Similarity=0.130  Sum_probs=94.8

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII  301 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v  301 (467)
                      +++++.+.|..  +.+++++++++++|  ++|+||||||||||+++|++...  .|.|.++|.++........++.++++
T Consensus        51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~  124 (278)
T 1iy2_A           51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL  124 (278)
T ss_dssp             HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence            45666666742  34899999999999  99999999999999999999885  79999998776544334455668888


Q ss_pred             cCCCc-ccc-ccHHHhcCc-CCCC------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          302 PQEPT-LFR-GSVRTNLDP-LGMY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       302 ~Q~~~-lf~-~tv~enl~~-~~~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +|++. .++ -++.||+.. ....      ..++..+.+     ..++               ..|||||+||+.+++|+
T Consensus       125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a~  184 (278)
T 1iy2_A          125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAA  184 (278)
T ss_dssp             HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred             HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEEe
Confidence            88764 333 356777732 1110      011111111     1111               23699999999999999


Q ss_pred             cCCCCEEEeeCCC
Q 044927          373 LKRNRILVLDEAT  385 (467)
Q Consensus       373 ~~~p~iliLDEpt  385 (467)
                      ..+|++  ||++.
T Consensus       185 t~~p~~--ld~~l  195 (278)
T 1iy2_A          185 TNRPDI--LDPAL  195 (278)
T ss_dssp             ESCTTS--SCHHH
T ss_pred             cCCchh--CCHhH
Confidence            999987  67664

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.02  E-value=5e-12  Score=119.10  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=52.0

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH--------
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL--------  291 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~--------  291 (467)
                      .|+++|++..|+.         ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++        
T Consensus         9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (227)
T 1qhl_A            9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH   78 (227)
T ss_dssp             EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred             EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence            5888988765521         456666 8999999999999999999999999999999999998843322        


Q ss_pred             HHHhcccEEEcCC
Q 044927          292 KDLRTKLSIIPQE  304 (467)
Q Consensus       292 ~~~r~~i~~v~Q~  304 (467)
                      ...+..++|++|+
T Consensus        79 ~~~~~~i~~v~~~   91 (227)
T 1qhl_A           79 GKLKAGVCYSMLD   91 (227)
T ss_dssp             GGBCSSEEEEEEE
T ss_pred             hHhhcCcEEEEEe
Confidence            2246679999984

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.02  E-value=1.5e-10  Score=109.31  Aligned_cols=166  Identities=13%  Similarity=0.087  Sum_probs=89.0

Q ss_pred             eecce-eEEEeCCcEEEEEcCCCCcHHHHHHHH-hcCCCCCccEEEEcCEeCCCCCHHHH---hcccEEEcCCCcccccc
Q 044927          237 VLKGI-TCTFKEGTRVGVVGRTGSGKTTLISAL-FRLVEPENGRILIDGLDICSMGLKDL---RTKLSIIPQEPTLFRGS  311 (467)
Q Consensus       237 ~L~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l-~gl~~p~~G~i~i~g~~i~~~~~~~~---r~~i~~v~Q~~~lf~~t  311 (467)
                      .|+++ .--+++|+.++|.||||||||||+..+ .+..+...+.+++++..    +..++   ..++++.+|+....   
T Consensus        11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~---   83 (247)
T 2dr3_A           11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK---   83 (247)
T ss_dssp             THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH---
T ss_pred             hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC---
Confidence            46665 557899999999999999999995544 55555444555555432    23332   23456655543110   


Q ss_pred             HHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCC-
Q 044927          312 VRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASI-  388 (467)
Q Consensus       312 v~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~L-  388 (467)
                        +++....... ..       .+.   ....+    ....+.    +....+....++.++  .+|+++++|+|++-+ 
T Consensus        84 --~~l~~~~~~~-~~-------~~~---~~~~~----~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~  142 (247)
T 2dr3_A           84 --GMFAMVDAFT-AG-------IGK---SKEYE----KYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI  142 (247)
T ss_dssp             --TSEEEEECST-TT-------TCC-----CCC----SCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred             --CcEEEEecch-hh-------ccc---ccccc----cccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence              1221000000 00       000   00000    000010    112233333344443  479999999999988 


Q ss_pred             -CHHHHHHHHHHHHHH--CCCceEEEEccChhH--------H-hhcCEEEEEeC
Q 044927          389 -DSATDAILQRIIREE--FPGSTVITVAHRVPT--------I-TDSDMFMVLSY  430 (467)
Q Consensus       389 -D~~~~~~i~~~l~~~--~~~~tvi~itH~l~~--------~-~~~d~i~vl~~  430 (467)
                       |+.........+.+.  ..++|+|+++|....        + ..||.|+.|+.
T Consensus       143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence             553333343444332  247999999997764        3 34899999974

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.00  E-value=6.8e-10  Score=111.34  Aligned_cols=143  Identities=19%  Similarity=0.245  Sum_probs=83.1

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-EEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY  322 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~  322 (467)
                      -+++|+++.|.||+|||||||+..++.......|.+ +++...  ..+. ...+++++-+|+           +....  
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~--  120 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQ--  120 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEEC--
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEec--
Confidence            478999999999999999999888875544434443 343321  1111 111222222211           10000  


Q ss_pred             CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC--CCEEEeeCCCCCC----------CH
Q 044927          323 SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR--NRILVLDEATASI----------DS  390 (467)
Q Consensus       323 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~--p~iliLDEpts~L----------D~  390 (467)
                                           |             .+.  .|-+.++++++++  |+++++||+++-+          |+
T Consensus       121 ---------------------~-------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~  164 (349)
T 2zr9_A          121 ---------------------P-------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS  164 (349)
T ss_dssp             ---------------------C-------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred             ---------------------C-------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence                                 0             011  2345577878755  9999999999998          32


Q ss_pred             ---HHHHHHHHHHHHH-----CCCceEEEEccChh----------------HHh-hcCEEEEEeCCEEEEecC
Q 044927          391 ---ATDAILQRIIREE-----FPGSTVITVAHRVP----------------TIT-DSDMFMVLSYGELVEYDL  438 (467)
Q Consensus       391 ---~~~~~i~~~l~~~-----~~~~tvi~itH~l~----------------~~~-~~d~i~vl~~G~iv~~g~  438 (467)
                         ...+.+.+.++++     ..++|+|+++|-..                .++ .||.++.+..+++...|+
T Consensus       165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence               1222333333332     23899999999543                144 489999998876655443

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.95  E-value=3.5e-11  Score=129.58  Aligned_cols=156  Identities=14%  Similarity=0.149  Sum_probs=102.5

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcccEEEcCCC--------
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPEN-GRILIDGLDICSMGLKDLRTKLSIIPQEP--------  305 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~--------  305 (467)
                      ..+++++++.+++|+.+.|+||||+|||||+++|++++++.. |.+.+++.+....     ...++++|+..        
T Consensus        47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~  121 (604)
T 3k1j_A           47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY  121 (604)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred             hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence            348999999999999999999999999999999999999987 8888888665433     34588887754        


Q ss_pred             --------------cccc-ccHHHhcCcCCC-CCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHH
Q 044927          306 --------------TLFR-GSVRTNLDPLGM-YSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG  369 (467)
Q Consensus       306 --------------~lf~-~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iA  369 (467)
                                    +.|. .++.+|+..... .....+... ......+......    .. ......+|+|++|++..+
T Consensus       122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~----~~-~~~~g~~~~g~~~~i~~g  195 (604)
T 3k1j_A          122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR----HD-PFQSGGLGTPAHERVEPG  195 (604)
T ss_dssp             HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC----CC-CC----CCCCGGGGEECC
T ss_pred             HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE----ec-hhhcCCccccccccccCc
Confidence                          1221 234444421100 000000000 0011111221111    00 112245899999999999


Q ss_pred             HHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 044927          370 RVLLKRNRILVLDEATASIDSATDAILQRIIRE  402 (467)
Q Consensus       370 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~  402 (467)
                      +....++.+|+|||... |++.....+.+.|++
T Consensus       196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            99999999999999988 899999999999985

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.95  E-value=2.2e-11  Score=127.40  Aligned_cols=160  Identities=17%  Similarity=0.202  Sum_probs=91.6

Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcC
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD  317 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~  317 (467)
                      .+++++.++..+.|.|+|||||||+++.|..  ++.++.|++.+.+.|.+......+..       -|+++. ++.+|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~  230 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK  230 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence            4778889999999999999999999999886  67777788888888776543332221       122211 1111110


Q ss_pred             c----CCCCCHHHH---HHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHH----------HHHHHhcCCCC-EE
Q 044927          318 P----LGMYSDNEI---WEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLF----------CLGRVLLKRNR-IL  379 (467)
Q Consensus       318 ~----~~~~~~~~~---~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl----------~iARal~~~p~-il  379 (467)
                      .    ... ..+++   .+.+...++.+..     +|+..+   ...+|+||+|+.          ++|+++...|. ++
T Consensus       231 ~a~~~L~~-~~~EmerR~~ll~~~Gv~~i~-----~yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl  301 (512)
T 2ius_A          231 DAANALRW-CVNEMERRYKLMSALGVRNLA-----GYNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV  301 (512)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHTTCSSHH-----HHHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHcCCccHH-----HHHHHH---HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence            0    000 00111   1222222221110     011001   023577877652          46777888898 78


Q ss_pred             EeeCCCCCCCHHHHHHHHHHHH---HH-C-CCceEEEEccChh
Q 044927          380 VLDEATASIDSATDAILQRIIR---EE-F-PGSTVITVAHRVP  417 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l~---~~-~-~~~tvi~itH~l~  417 (467)
                      ++||+++.+|... ..+.+.+.   +. . -|.++|++|||++
T Consensus       302 vIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          302 LVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             EEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             EEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            8999999887432 22333332   32 2 2889999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.94  E-value=9.6e-13  Score=125.94  Aligned_cols=138  Identities=17%  Similarity=0.108  Sum_probs=95.4

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      .+++++++.|..  +.+++++++++++|  ++|+||||||||||++++++...  .|.+.++|.++........++.+++
T Consensus        26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~   99 (254)
T 1ixz_A           26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD   99 (254)
T ss_dssp             HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence            456677777742  34899999999999  99999999999999999999875  7899999877644433444566778


Q ss_pred             EcCCCc-ccc-ccHHHhcC-cCCC-C-----CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          301 IPQEPT-LFR-GSVRTNLD-PLGM-Y-----SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       301 v~Q~~~-lf~-~tv~enl~-~~~~-~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ++|+.. .++ -++.|++. +... .     ..++..+.+     ..++               ..|||||+||+.+++|
T Consensus       100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~a  159 (254)
T 1ixz_A          100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA  159 (254)
T ss_dssp             HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEEE
T ss_pred             HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence            888753 332 35667763 1111 0     111111111     1112               2368999999999999


Q ss_pred             hcCCCCEEEeeCCCC
Q 044927          372 LLKRNRILVLDEATA  386 (467)
Q Consensus       372 l~~~p~iliLDEpts  386 (467)
                      +..+|++  ||++.-
T Consensus       160 ~t~~p~~--ld~~l~  172 (254)
T 1ixz_A          160 ATNRPDI--LDPALL  172 (254)
T ss_dssp             EESCGGG--SCGGGG
T ss_pred             ccCCchh--CCHHHc
Confidence            9999987  788764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.91  E-value=5.4e-10  Score=116.11  Aligned_cols=176  Identities=18%  Similarity=0.194  Sum_probs=108.4

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhccc-EEEcCCCccccccHHH
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKL-SIIPQEPTLFRGSVRT  314 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~tv~e  314 (467)
                      .|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.+   .+...++.++ +....-+       .+
T Consensus       192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~~  261 (454)
T 2r6a_A          192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------AQ  261 (454)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------HH
T ss_pred             HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------HH
Confidence            68888878999999999999999999999999987766545 56665533   3444444332 1111100       01


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCCCH--
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASIDS--  390 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~LD~--  390 (467)
                      .+. .+..++++...+.+..   +.+...|-    .+.+ ...+|.+|.+  +.+|.+.  .+|+++++|+++.-.++  
T Consensus       262 ~l~-~g~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~  330 (454)
T 2r6a_A          262 NLR-TGKLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGR  330 (454)
T ss_dssp             HHH-TSCCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC
T ss_pred             HHh-cCCCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCC
Confidence            111 1233444433332221   12222221    1111 2468999876  5677776  68999999999997743  


Q ss_pred             ------HHHHHHHHHHHHHC--CCceEEEEcc---------C--hh--------HHh-hcCEEEEEeCCEE
Q 044927          391 ------ATDAILQRIIREEF--PGSTVITVAH---------R--VP--------TIT-DSDMFMVLSYGEL  433 (467)
Q Consensus       391 ------~~~~~i~~~l~~~~--~~~tvi~itH---------~--l~--------~~~-~~d~i~vl~~G~i  433 (467)
                            .....+.+.|+.+.  .+++||+++|         +  +.        .++ .||.|++|+.++.
T Consensus       331 ~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          331 SKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence                  12245555666543  3799999999         1  32        344 4999999987654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.87  E-value=1.2e-09  Score=118.64  Aligned_cols=132  Identities=23%  Similarity=0.238  Sum_probs=93.5

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcC
Q 044927          242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPL  319 (467)
Q Consensus       242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~  319 (467)
                      |+++++|.+++|+|++|+|||||++.|++...+  ..|+| .+|..+.++...+.++.+++.+|.+.++..++..|+.-.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT   81 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA   81 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence            456789999999999999999999999987665  67988 789899999888889999999999988877777777311


Q ss_pred             CCCCH--HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHH
Q 044927          320 GMYSD--NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ  397 (467)
Q Consensus       320 ~~~~~--~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~  397 (467)
                      +...+  .+...++.                                        ..++-++++| |+.++++.++..+.
T Consensus        82 pG~~~f~~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~~  120 (665)
T 2dy1_A           82 PGYGDFVGEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAWT  120 (665)
T ss_dssp             CCSGGGHHHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred             CCccchHHHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHHH
Confidence            11111  11111111                                        2456677778 88888887775443


Q ss_pred             HHHHHHCCCceEEEEccChhH
Q 044927          398 RIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       398 ~~l~~~~~~~tvi~itH~l~~  418 (467)
                      .. ++  .+.++|++.|.++.
T Consensus       121 ~~-~~--~~ip~ilv~NKiD~  138 (665)
T 2dy1_A          121 VA-ER--LGLPRMVVVTKLDK  138 (665)
T ss_dssp             HH-HH--TTCCEEEEEECGGG
T ss_pred             HH-HH--ccCCEEEEecCCch
Confidence            33 22  35677778887664

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.82  E-value=3.9e-11  Score=121.36  Aligned_cols=136  Identities=18%  Similarity=0.104  Sum_probs=87.3

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      .+++++|+++++|+.++|+||||||||||+++|+|.   .+|++...+  ..   ...++..++++||.+.++    .|+
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd  224 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED  224 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence            479999999999999999999999999999999996   367776511  11   122233478889887543    233


Q ss_pred             cCcCCC----C-CHHHHHHHHHHcChHHHHHh---------CCCccc-----ccccCCCCCCChhHHHHHHHHHHhcCCC
Q 044927          316 LDPLGM----Y-SDNEIWEAMEKCQLKATISR---------LPMLLD-----SSVSDEGENWSVGQRQLFCLGRVLLKRN  376 (467)
Q Consensus       316 l~~~~~----~-~~~~~~~~~~~~~l~~~i~~---------l~~g~~-----t~v~~~g~~LSgGq~Qrl~iARal~~~p  376 (467)
                      +.....    . ....+.   ....+.+.++.         .|+.++     -.+..+...+++|++||++.+.++..+|
T Consensus       225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p  301 (377)
T 1svm_A          225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD  301 (377)
T ss_dssp             CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred             HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence            332111    1 000100   11122333321         011010     1234455678999999999998899999


Q ss_pred             CEEE-eeCCCC
Q 044927          377 RILV-LDEATA  386 (467)
Q Consensus       377 ~ili-LDEpts  386 (467)
                      ++++ ||+|+.
T Consensus       302 DLliyLd~~~~  312 (377)
T 1svm_A          302 YLKHCLERSEF  312 (377)
T ss_dssp             HHHHHHHTCTH
T ss_pred             CeEEEEeCCHH
Confidence            9998 999997

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.80  E-value=2e-09  Score=98.48  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             HHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 044927          366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE  402 (467)
Q Consensus       366 l~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~  402 (467)
                      ...||+++.+|+++++|  ||++|+.....+.+.|.+
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence            45689999999999999  999999888777777654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.73  E-value=2.1e-09  Score=98.74  Aligned_cols=83  Identities=16%  Similarity=0.251  Sum_probs=64.9

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVE-------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR  309 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~  309 (467)
                      +...+|+.++|+||||||||||++.|++.++             |..|+  ++|++..-++..++++.+   .|+.+++.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~   88 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF   88 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence            4456899999999999999999999999886             77887  689888778888888765   68889999


Q ss_pred             ccHHHhcCcCCCCCHHHHHHHHHH
Q 044927          310 GSVRTNLDPLGMYSDNEIWEAMEK  333 (467)
Q Consensus       310 ~tv~enl~~~~~~~~~~~~~~~~~  333 (467)
                      +++.+|. ++  .+.+.+.++++.
T Consensus        89 ~~~~~n~-YG--t~~~~v~~~l~~  109 (197)
T 3ney_A           89 GSYQGNM-FG--TKFETVHQIHKQ  109 (197)
T ss_dssp             EEETTEE-EE--EEHHHHHHHHHT
T ss_pred             hhhhcee-cc--cchhhHHHHHhc
Confidence            9999995 32  234455555543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.69  E-value=1.8e-09  Score=97.70  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEE----------cCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRILI----------DGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT  314 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i~i----------~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  314 (467)
                      .+|++++|+||||||||||++.|++++++ ..|.|..          +|.+....+...+++.   +.|+.+++..++.+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~   79 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED   79 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence            36999999999999999999999999874 4455543          4544444455555542   45667777777777


Q ss_pred             hc
Q 044927          315 NL  316 (467)
Q Consensus       315 nl  316 (467)
                      |.
T Consensus        80 n~   81 (180)
T 1kgd_A           80 AM   81 (180)
T ss_dssp             EE
T ss_pred             cc
Confidence            74

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.64  E-value=3.3e-08  Score=102.83  Aligned_cols=114  Identities=20%  Similarity=0.256  Sum_probs=75.6

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHh
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN  315 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en  315 (467)
                      ..++++++++++|  +.|+||+|+|||||++++++....                              | ++.-+..+.
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~   85 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDF   85 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGT
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHH
Confidence            3577888888887  889999999999999999983210                              0 111111111


Q ss_pred             cCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCC----------
Q 044927          316 LDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT----------  385 (467)
Q Consensus       316 l~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpt----------  385 (467)
                      ...   +                            +|      .|++++|-.+++|....|.+|++||+.          
T Consensus        86 ~~~---~----------------------------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~  128 (476)
T 2ce7_A           86 VEL---F----------------------------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL  128 (476)
T ss_dssp             TTC---C----------------------------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred             HHH---H----------------------------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence            110   0                            01      267888999999999999999999994          


Q ss_pred             CCCCHHHHHHHHHHHHHH-----CCCceEEEEccChhHH
Q 044927          386 ASIDSATDAILQRIIREE-----FPGSTVITVAHRVPTI  419 (467)
Q Consensus       386 s~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~l~~~  419 (467)
                      ++.|++.++.+.+.+...     ..+..+|.+||+++.+
T Consensus       129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A          129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            356666665555555443     2367889999998654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.63  E-value=3.1e-09  Score=97.76  Aligned_cols=63  Identities=21%  Similarity=0.126  Sum_probs=44.1

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLF  308 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf  308 (467)
                      -.++.++|++++|+|||||||||++++|++.+    |.+.++|.++... ....+..+++++|++..+
T Consensus        22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~   84 (200)
T 4eun_A           22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW   84 (200)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred             hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence            34667899999999999999999999999987    8999999776421 111223568888875443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.63  E-value=1.1e-08  Score=93.93  Aligned_cols=62  Identities=16%  Similarity=0.193  Sum_probs=42.2

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcccEEEcCCCccc
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSIIPQEPTLF  308 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf  308 (467)
                      +++++|++++|+|||||||||++++|++++.|+.| .+   +....... ...+..++|++|++..|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i---~~~~~~~~-~~~~~~~~~~~~~~~~~   63 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSI---SMTTRQMR-EGEVDGVDYFFKTRDAF   63 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCC---CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEec---ccccCCCC-CCccCCCceEEcCHHHH
Confidence            46889999999999999999999999999977665 22   22222111 11233588899887544

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.62  E-value=2.9e-09  Score=101.77  Aligned_cols=52  Identities=29%  Similarity=0.344  Sum_probs=35.6

Q ss_pred             cEEEEeE-EEEeCCCCCceecceeEEEeC---CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          220 RIELEDL-KVRYRPNTPLVLKGITCTFKE---GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       220 ~i~~~~v-s~~y~~~~~~~L~~isl~i~~---Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++++|+ +|+|++ ...+|+|+||+|++   |++++|+|++||||||+.+.|++.+
T Consensus        17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5899999 999932 34699999999999   9999999999999999999999855

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.60  E-value=1.1e-09  Score=100.78  Aligned_cols=60  Identities=25%  Similarity=0.378  Sum_probs=45.2

Q ss_pred             EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE--EEcCEeC
Q 044927          224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI--LIDGLDI  286 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i--~i~g~~i  286 (467)
                      +|++..+..  ..+.+..++..++|++++|+|||||||||+++.|++.+. ..|.+  ++||.++
T Consensus         3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~   64 (200)
T 3uie_A            3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV   64 (200)
T ss_dssp             -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred             CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence            345555432  236788888899999999999999999999999999987 67988  8888554

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.59  E-value=2e-08  Score=101.27  Aligned_cols=142  Identities=18%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-----------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcc----ccccHH-
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE-----------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTL----FRGSVR-  313 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~-----------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~tv~-  313 (467)
                      +++|+|++|||||||++.|+|...           |..|.|.++|.++.      +....|++.|.|.-    |..|.. 
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~  254 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE  254 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence            499999999999999999999875           67799999997652      23346666664431    222222 


Q ss_pred             ----HhcCcCCCCCHHH--HHHHHHHcChHHHHHhCC-Ccc-cccccCCCCCCChhHHHHHHHH----HHh-cCCCCEEE
Q 044927          314 ----TNLDPLGMYSDNE--IWEAMEKCQLKATISRLP-MLL-DSSVSDEGENWSVGQRQLFCLG----RVL-LKRNRILV  380 (467)
Q Consensus       314 ----enl~~~~~~~~~~--~~~~~~~~~l~~~i~~l~-~g~-~t~v~~~g~~LSgGq~Qrl~iA----Ral-~~~p~ili  380 (467)
                          +++.+.-+.++..  ..+..+.  ..+.+..+. .+. --.++.+...+|+|++||+.++    +++ ..+|++  
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--  330 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV--  330 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence                1221111111111  1111111  111222210 011 1122334445788888988877    666 445554  


Q ss_pred             eeCCCCCCCHHHHHHHHHHHHHH
Q 044927          381 LDEATASIDSATDAILQRIIREE  403 (467)
Q Consensus       381 LDEpts~LD~~~~~~i~~~l~~~  403 (467)
                        +|+|++|......+.+.|.+.
T Consensus       331 --~~~SA~~g~gi~~L~~~I~~~  351 (364)
T 2qtf_A          331 --IPISALKRTNLELLRDKIYQL  351 (364)
T ss_dssp             --EECBTTTTBSHHHHHHHHHHH
T ss_pred             --EEEECCCCcCHHHHHHHHHHH
Confidence              899999998888888877653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.55  E-value=1.6e-08  Score=93.19  Aligned_cols=47  Identities=28%  Similarity=0.294  Sum_probs=40.4

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccc
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG  310 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~  310 (467)
                      +-=++++|++++|+|++||||||+++.|.+.++                       .+.+++||+.++++
T Consensus        14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~   60 (207)
T 2qt1_A           14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE   60 (207)
T ss_dssp             CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence            334678899999999999999999999999875                       37889999888865

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.55  E-value=1.7e-09  Score=113.23  Aligned_cols=138  Identities=18%  Similarity=0.167  Sum_probs=94.7

Q ss_pred             EEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEE
Q 044927          222 ELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII  301 (467)
Q Consensus       222 ~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v  301 (467)
                      +++++...|.+  +.+++++++++++|  +.|+||+|+|||||+++|++...  .|.+.++|.++.+......++++..+
T Consensus        42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l  115 (499)
T 2dhr_A           42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL  115 (499)
T ss_dssp             HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred             HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence            45555555532  34789999999999  99999999999999999999875  78999999887655444445567788


Q ss_pred             cCCCc-cccc-cHHHhcCcCC-CC------CHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          302 PQEPT-LFRG-SVRTNLDPLG-MY------SDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       302 ~Q~~~-lf~~-tv~enl~~~~-~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      +|... .++. .+.|++.... ..      ..++..+.+.     .++.               .||||++|+..+++|.
T Consensus       116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviAa  175 (499)
T 2dhr_A          116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMAA  175 (499)
T ss_dssp             TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEEC
T ss_pred             HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEEe
Confidence            88764 2333 5567774221 10      1222222221     1222               2578888888899999


Q ss_pred             cCCCCEEEeeCCCCC
Q 044927          373 LKRNRILVLDEATAS  387 (467)
Q Consensus       373 ~~~p~iliLDEpts~  387 (467)
                      ..+|++  ||||.-.
T Consensus       176 tn~p~~--LD~aLlr  188 (499)
T 2dhr_A          176 TNRPDI--LDPALLR  188 (499)
T ss_dssp             CSCGGG--SCTTTSS
T ss_pred             cCChhh--cCccccc
Confidence            999987  8888753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.54  E-value=1.4e-08  Score=100.55  Aligned_cols=67  Identities=19%  Similarity=0.257  Sum_probs=54.1

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHH-----hcccEEE-cCC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL----KDL-----RTKLSII-PQE  304 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~  304 (467)
                      +++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+.....    ..+     +..+.++ +|.
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~  171 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK  171 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence            467888889999999999999999999999999999999999998887754321    233     4567777 554

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.48  E-value=2.5e-07  Score=92.61  Aligned_cols=60  Identities=22%  Similarity=0.235  Sum_probs=45.2

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-EEcCEeCCCCCHHHHhcccEEEcCCCc
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDGLDICSMGLKDLRTKLSIIPQEPT  306 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~  306 (467)
                      -+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+..  + ..+.+++++.+|+..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~  117 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLL  117 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCE
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhh
Confidence            378999999999999999999999999888777865 66664322  2 224456777766543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.46  E-value=2.2e-08  Score=90.20  Aligned_cols=66  Identities=20%  Similarity=0.307  Sum_probs=47.2

Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE--eCCCCC----HHHHhcccEEEcCCC
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL--DICSMG----LKDLRTKLSIIPQEP  305 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~--~i~~~~----~~~~r~~i~~v~Q~~  305 (467)
                      +++++++.+| +.+|+||||||||||+++|.+++.+..|...-.+.  ++-...    ....+..|.+++|++
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~   89 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE   89 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence            6889999999 99999999999999999999988887765432221  111110    002345688999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.39  E-value=2.1e-07  Score=93.53  Aligned_cols=46  Identities=20%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEEcCE
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR--LVEPENGRILIDGL  284 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g--l~~p~~G~i~i~g~  284 (467)
                      .+|++++++++   .++|+|++|||||||++.|.|  ++++.+|.+.-...
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~   72 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL   72 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence            37899999998   999999999999999999999  77888887654443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.38  E-value=1.6e-07  Score=86.26  Aligned_cols=69  Identities=10%  Similarity=0.090  Sum_probs=44.8

Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH---hhcCEEEEEeC
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI---TDSDMFMVLSY  430 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~---~~~d~i~vl~~  430 (467)
                      +.|+.+|..+++.+..+|+.+-.+  .+.++|...+.+.+.+... .+.++|+-+|.+...   ..||++++++.
T Consensus        61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~  132 (206)
T 1jjv_A           61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV  132 (206)
T ss_dssp             -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred             cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence            678999999999998888654333  3455676666666666543 355888888987654   45899999863

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.37  E-value=2.4e-08  Score=93.96  Aligned_cols=64  Identities=19%  Similarity=0.116  Sum_probs=49.1

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------CHHH----HhcccEEEcCCCcccc
Q 044927          242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM------GLKD----LRTKLSIIPQEPTLFR  309 (467)
Q Consensus       242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf~  309 (467)
                      +.+.++|++++|.|+|||||||++++|.|+    .|+|.+.+.+....      ....    .++.+++++|.+.++.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~   87 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT   87 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence            345588999999999999999999999998    78999998875321      1211    1456889999876654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.35  E-value=7.2e-08  Score=89.21  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEE
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEP-ENGRI  279 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p-~~G~i  279 (467)
                      ++|++++|+||||||||||++.|++.++| ..+.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~   40 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI   40 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence            58999999999999999999999999987 33433

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.35  E-value=1.3e-06  Score=87.72  Aligned_cols=61  Identities=15%  Similarity=0.116  Sum_probs=49.1

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEee-CCCCCCCHHHHHHHHHHHHHHCCCceEEEEc--cChh
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLD-EATASIDSATDAILQRIIREEFPGSTVITVA--HRVP  417 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~l~  417 (467)
                      ..+|+|++|++. +.+...++-++++| ++++++|......+.+.+.+...++.+|+|.  ||+.
T Consensus       230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            457999999887 66666777889999 9999999998888888777765578888888  7764

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.33  E-value=7.6e-07  Score=98.20  Aligned_cols=68  Identities=15%  Similarity=0.107  Sum_probs=53.3

Q ss_pred             CCCChhHHHHHHHHHHhcCCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHCC-CceEEE-EccChhHHhh-cC
Q 044927          356 ENWSVGQRQLFCLGRVLLKRNRILVLDEATA-SIDSATDAILQRIIREEFP-GSTVIT-VAHRVPTITD-SD  423 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~l~~~~~-~d  423 (467)
                      .-+|+|+.+|..++++++.+++++|+|||.. ++|......+.+.+....+ .+++++ .||+.+.+.. ++
T Consensus       189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~  260 (773)
T 2xau_A          189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN  260 (773)
T ss_dssp             EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred             EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence            4568999999999999999999999999997 8998776666666655544 466666 4898876653 44

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=2.4e-07  Score=84.86  Aligned_cols=38  Identities=29%  Similarity=0.283  Sum_probs=24.9

Q ss_pred             CceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          235 PLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       235 ~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45899999999999999999999999999999999766

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.22  E-value=8.3e-07  Score=90.88  Aligned_cols=159  Identities=23%  Similarity=0.170  Sum_probs=91.6

Q ss_pred             EeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-HhcccEEEc
Q 044927          224 EDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD-LRTKLSIIP  302 (467)
Q Consensus       224 ~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~i~~v~  302 (467)
                      +++++.|++..    ++++|+  +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++. .    
T Consensus        80 ~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~-~----  148 (425)
T 2ffh_A           80 EALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL-L----  148 (425)
T ss_dssp             HHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH-H----
T ss_pred             HHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH-h----
Confidence            44555554321    567777  89999999999999999999999999999999999887765422211 111 0    


Q ss_pred             CCCccccccHHHhcCcC--C-CCCHHHHHHHHHHcChHHHHHhC-CCcccccccCCCCCCC---hhHHHHHHHHHHhcCC
Q 044927          303 QEPTLFRGSVRTNLDPL--G-MYSDNEIWEAMEKCQLKATISRL-PMLLDSSVSDEGENWS---VGQRQLFCLGRVLLKR  375 (467)
Q Consensus       303 Q~~~lf~~tv~enl~~~--~-~~~~~~~~~~~~~~~l~~~i~~l-~~g~~t~v~~~g~~LS---gGq~Qrl~iARal~~~  375 (467)
                              .-..|+...  . ..+..++.        .+.+..+ ..++|..+=+-+..++   .-..+...+++++..+
T Consensus       149 --------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd  212 (425)
T 2ffh_A          149 --------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPD  212 (425)
T ss_dssp             --------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCS
T ss_pred             --------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCc
Confidence                    001233211  1 12223331        1222222 2456655544333333   3466777888888767


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEcc
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAH  414 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH  414 (467)
                      +-++++| ++++.|....   .+.+.+. -+.+-+++|+
T Consensus       213 ~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK  246 (425)
T 2ffh_A          213 EVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK  246 (425)
T ss_dssp             EEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred             eEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence            6778888 5566555432   1223322 2456667776

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.21  E-value=4.4e-06  Score=82.98  Aligned_cols=103  Identities=16%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL  316 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl  316 (467)
                      -|+.+.--+++|+.+.|.|++|+|||||+.-++.......+.|.                   |+.=             
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl-------------------~fSl-------------   82 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA-------------------VFSL-------------   82 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE-------------------EEES-------------
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE-------------------EEeC-------------
Confidence            46666557899999999999999999999888765432222222                   2210             


Q ss_pred             CcCCCCCHHHHHH----HHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCC
Q 044927          317 DPLGMYSDNEIWE----AMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID  389 (467)
Q Consensus       317 ~~~~~~~~~~~~~----~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD  389 (467)
                          +.+.+++..    ......+.....              ..||++++||++.|...+.+++++|.|+|...+|
T Consensus        83 ----Ems~~ql~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~  141 (338)
T 4a1f_A           83 ----EMSAEQLALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE  141 (338)
T ss_dssp             ----SSCHHHHHHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred             ----CCCHHHHHHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence                112222211    111222222211              2588888999888888888888888888865543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.19  E-value=3.3e-07  Score=84.21  Aligned_cols=47  Identities=21%  Similarity=0.197  Sum_probs=40.3

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG  290 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~  290 (467)
                      ..++|++++|+|+|||||||+++.|.+++++..|.|.+.+.|....+
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~   64 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE   64 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence            35789999999999999999999999999988999988776654443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.18  E-value=1.8e-06  Score=88.48  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=36.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC  287 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~  287 (467)
                      ++.+++++||+||||||++..|++.+.+..++|.+-+.|..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            57899999999999999999999999998899988776653

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.16  E-value=7.4e-08  Score=101.99  Aligned_cols=61  Identities=23%  Similarity=0.280  Sum_probs=48.0

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEE-EcCEeCCC-------CCHH---HHhcccEEEcCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RIL-IDGLDICS-------MGLK---DLRTKLSIIPQE  304 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~  304 (467)
                      .+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.++..       ++..   ..++++++++|+
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~  437 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE  437 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999987 785 89866532       2221   234567888876

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.13  E-value=3.1e-07  Score=91.99  Aligned_cols=54  Identities=20%  Similarity=0.312  Sum_probs=48.8

Q ss_pred             cccEEEEeEEEEeCCCCCceec--------------ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          218 HGRIELEDLKVRYRPNTPLVLK--------------GITCTFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~--------------~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+.+.|+||++.|+.. +..|+              |+++.+.+|++++|+||+|+|||||++.|++..
T Consensus       131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            3579999999999865 45788              899999999999999999999999999999875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.10  E-value=1.4e-06  Score=86.15  Aligned_cols=28  Identities=32%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+++|+.+.|.||+|||||||+..++.-
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5799999999999999999999988764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.05  E-value=5.5e-07  Score=88.92  Aligned_cols=46  Identities=24%  Similarity=0.392  Sum_probs=37.1

Q ss_pred             ceecceeEEEeCCc------EEEEEcCCCCcHHHHHHHHhcCCC--CCccEEEE
Q 044927          236 LVLKGITCTFKEGT------RVGVVGRTGSGKTTLISALFRLVE--PENGRILI  281 (467)
Q Consensus       236 ~~L~~isl~i~~Ge------~~~ivG~sGsGKSTll~~l~gl~~--p~~G~i~i  281 (467)
                      ..|++++..+.+++      ++||+|||||||||++++|.+++.  |++|.+.+
T Consensus        74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~  127 (321)
T 3tqc_A           74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV  127 (321)
T ss_dssp             HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence            36777777777766      999999999999999999999987  45555433

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.02  E-value=1.3e-06  Score=78.01  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=33.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC  287 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~  287 (467)
                      .+|++++|+|+|||||||+++.|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            468999999999999999999999875    88999886654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.99  E-value=9.7e-06  Score=81.28  Aligned_cols=45  Identities=20%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC----CCceEEEEccChhHH
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEF----PGSTVITVAHRVPTI  419 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~~  419 (467)
                      .+|.++++||+... |+.....+.+.+.+..    .+.++|+++|+.+..
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~  172 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL  172 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence            45889999999876 8877777777765432    367899999988543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.94  E-value=4.4e-06  Score=83.36  Aligned_cols=28  Identities=21%  Similarity=0.186  Sum_probs=25.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999988874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.92  E-value=1.5e-06  Score=86.40  Aligned_cols=42  Identities=31%  Similarity=0.324  Sum_probs=37.4

Q ss_pred             ceecceeEEEeCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 044927          236 LVLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLVEPENG  277 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~gl~~p~~G  277 (467)
                      .+++.++..++.|+.  +.+.||+|+||||+++.+++.+.+..+
T Consensus        32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   75 (340)
T 1sxj_C           32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY   75 (340)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence            488999999999998  999999999999999999998766544

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.92  E-value=2.7e-05  Score=75.39  Aligned_cols=71  Identities=8%  Similarity=-0.012  Sum_probs=45.3

Q ss_pred             ChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHH----------HHHHHHHHHHHHC-----CCceEEEEccChhHH----
Q 044927          359 SVGQRQLFCLGRVLLKRNRILVLDEATASIDSA----------TDAILQRIIREEF-----PGSTVITVAHRVPTI----  419 (467)
Q Consensus       359 SgGq~Qrl~iARal~~~p~iliLDEpts~LD~~----------~~~~i~~~l~~~~-----~~~tvi~itH~l~~~----  419 (467)
                      +++++.|..++++...+|.+|++||+.+-++..          ....+...+....     .+..+|.+|++++.+    
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l  176 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA  176 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence            356777888888888899999999998776532          2223444444432     234577788876432    


Q ss_pred             -hhcCEEEEEe
Q 044927          420 -TDSDMFMVLS  429 (467)
Q Consensus       420 -~~~d~i~vl~  429 (467)
                       +.+++++.+.
T Consensus       177 ~~R~~~~i~~~  187 (297)
T 3b9p_A          177 LRRFTKRVYVS  187 (297)
T ss_dssp             HHHCCEEEECC
T ss_pred             HhhCCeEEEeC
Confidence             3477665553

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.89  E-value=1.7e-06  Score=91.74  Aligned_cols=80  Identities=25%  Similarity=0.292  Sum_probs=48.9

Q ss_pred             EEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927          223 LEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIP  302 (467)
Q Consensus       223 ~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~  302 (467)
                      ++++...|.  ...+++++++++ +|+.++|+||||+|||||+++|++...+..|+|.++|......-....++.+|+++
T Consensus        86 ~~~vk~~i~--~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~  162 (543)
T 3m6a_A           86 LEKVKERIL--EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP  162 (543)
T ss_dssp             CHHHHHHHH--HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred             HHHHHHHHH--HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence            345555553  124678888888 89999999999999999999999999999999988875332111122345566666


Q ss_pred             CCC
Q 044927          303 QEP  305 (467)
Q Consensus       303 Q~~  305 (467)
                      |..
T Consensus       163 ~~~  165 (543)
T 3m6a_A          163 GRI  165 (543)
T ss_dssp             -CH
T ss_pred             hHH
Confidence            643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.87  E-value=1.3e-06  Score=78.44  Aligned_cols=40  Identities=35%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGLDI  286 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G--~i~i~g~~i  286 (467)
                      ++|++++|+|++||||||+.+.|.+.++| .|  .+.+||..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            47999999999999999999999998866 56  666776443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.85  E-value=3.7e-06  Score=82.29  Aligned_cols=145  Identities=17%  Similarity=0.120  Sum_probs=74.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCHHH
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSDNE  326 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~~~  326 (467)
                      ++.+++|+|++|+|||||++.|+|..      +.+..    .......++..++++++..-+.  +.|  .++  ... +
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s----~~~~tTr~~~~gi~~~~~~~i~--~iD--TpG--~~~-~   69 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITS----RKAQTTRHRIVGIHTEGAYQAI--YVD--TPG--LHM-E   69 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS------EEECC----CCSSCCSSCEEEEEEETTEEEE--EES--SSS--CCH-H
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC------ccccC----CCCCcceeeEEEEEEECCeeEE--EEE--CcC--CCc-c
Confidence            34589999999999999999999863      21111    1111112334677777643111  111  111  110 1


Q ss_pred             HHHHHHHcChHHHHHhCCC---cccc--cccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCCCHHH-HHHHHH
Q 044927          327 IWEAMEKCQLKATISRLPM---LLDS--SVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASIDSAT-DAILQR  398 (467)
Q Consensus       327 ~~~~~~~~~l~~~i~~l~~---g~~t--~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~LD~~~-~~~i~~  398 (467)
                      ....+..    .+......   ..|-  .+-+... +|+|++   .+++++.  ..|.++++    +.+|... ...+.+
T Consensus        70 ~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~  137 (301)
T 1ega_A           70 EKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP  137 (301)
T ss_dssp             HHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred             chhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence            1111110    11111111   1121  1122223 898886   4566665  67888888    6788765 455556


Q ss_pred             HHHHHCC--C--ceEEEEccChhHHh
Q 044927          399 IIREEFP--G--STVITVAHRVPTIT  420 (467)
Q Consensus       399 ~l~~~~~--~--~tvi~itH~l~~~~  420 (467)
                      .+.++.+  +  .++.+++|+-..+.
T Consensus       138 ~l~~l~~~~~~~~~i~iSA~~g~~v~  163 (301)
T 1ega_A          138 HLQFLASQMNFLDIVPISAETGLNVD  163 (301)
T ss_dssp             HHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred             HHHHHHHhcCcCceEEEECCCCCCHH
Confidence            5555422  3  36667777765544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.83  E-value=2.1e-06  Score=85.57  Aligned_cols=52  Identities=27%  Similarity=0.369  Sum_probs=46.3

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC  287 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~  287 (467)
                      .+++++++++++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.|..
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~   95 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   95 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence            3788999999999999999999999999999999999888888887666553

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.83  E-value=1.6e-05  Score=82.07  Aligned_cols=67  Identities=18%  Similarity=0.343  Sum_probs=44.1

Q ss_pred             CCCCEEEeeCCCCCCCH-HHHHHHHHHHHHH-CCCceEEEEccCh-hHHhh-cCEEEE-EeCCEEEEecChh
Q 044927          374 KRNRILVLDEATASIDS-ATDAILQRIIREE-FPGSTVITVAHRV-PTITD-SDMFMV-LSYGELVEYDLPS  440 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~-~~~~~i~~~l~~~-~~~~tvi~itH~l-~~~~~-~d~i~v-l~~G~iv~~g~~~  440 (467)
                      .+|++|++||+..-.+. .++..+...+... ..++.+|++||+. ..+.. .+++.- ++.|.+++.++|+
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~  264 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence            38999999999887764 5677788888764 4578899999984 33221 222222 3456666666554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.82  E-value=8.9e-06  Score=83.86  Aligned_cols=61  Identities=28%  Similarity=0.494  Sum_probs=39.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC------------CCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVE------------PENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR  309 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~------------p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~  309 (467)
                      -+++|+|+||+|||||++.|+|...            |.+|.+.++|.++.-++....++..++.+|....|.
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~  253 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS  253 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence            4799999999999999999999853            678999999987655554445555566656555443

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.78  E-value=0.00011  Score=68.97  Aligned_cols=28  Identities=29%  Similarity=0.470  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENG  277 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G  277 (467)
                      +++|+|++|+|||||++.|+|...+.+|
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            6899999999999999999997766555

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.72  E-value=8.2e-06  Score=74.31  Aligned_cols=57  Identities=26%  Similarity=0.313  Sum_probs=38.3

Q ss_pred             EEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC----C----CCCccEEEEcCEe
Q 044927          227 KVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL----V----EPENGRILIDGLD  285 (467)
Q Consensus       227 s~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl----~----~p~~G~i~i~g~~  285 (467)
                      +++|++-. .+++++|++.+++ +++++|++|+|||||++.+.+-    +    .++.+.+.++|..
T Consensus         6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A            6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            45666543 4899999998887 5789999999999999999872    2    2344666666643

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.71  E-value=1.2e-05  Score=71.36  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=28.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      .|++++|+|||||||||+++.|++.+.+    +.+++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            4788999999999999999999998754    55654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.71  E-value=9.1e-06  Score=76.27  Aligned_cols=44  Identities=23%  Similarity=0.361  Sum_probs=32.4

Q ss_pred             ecceeEEEe---CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 044927          238 LKGITCTFK---EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID  282 (467)
Q Consensus       238 L~~isl~i~---~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~  282 (467)
                      |.+.|+++.   +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            666677666   8999999999999999999999999887 6666543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.70  E-value=1.4e-05  Score=79.82  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=26.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPE  275 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~  275 (467)
                      .++..+.|.||+|+|||||++.+++...+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            457899999999999999999999877553

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.70  E-value=8.3e-06  Score=81.52  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDIC  287 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~  287 (467)
                      +++.+++|+|++|||||||++.|+|.+.|.+|+|.+.+.|..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            457899999999999999999999999888899988776654

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.66  E-value=4e-05  Score=71.88  Aligned_cols=132  Identities=18%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCcccc-ccHHHhcCc-CCCC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR-GSVRTNLDP-LGMY  322 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~enl~~-~~~~  322 (467)
                      +.+|+.+.++|||||||||++.+++.......|.                ...++++.+.|.... .++.+|+.. .+..
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~  136 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE  136 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence            3578999999999999999888764321111110                124567777775432 245555521 1000


Q ss_pred             CHHHHHHHHHHcChHHHHHhCCCccc----ccccCCCC---CCChhHHHHHHHHHHhcCCCCEEEeeCCCC-CCCHHHHH
Q 044927          323 SDNEIWEAMEKCQLKATISRLPMLLD----SSVSDEGE---NWSVGQRQLFCLGRVLLKRNRILVLDEATA-SIDSATDA  394 (467)
Q Consensus       323 ~~~~~~~~~~~~~l~~~i~~l~~g~~----t~v~~~g~---~LSgGq~Qrl~iARal~~~p~iliLDEpts-~LD~~~~~  394 (467)
                                 .+       ...|+.    ........   --+.|.-.+..  +..+.+-+++|+||+-. ++|.....
T Consensus       137 -----------~~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~  196 (235)
T 3llm_A          137 -----------PG-------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL  196 (235)
T ss_dssp             -----------TT-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred             -----------cC-------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence                       00       000111    01000000   12456555543  44689999999999976 57766554


Q ss_pred             HHHHHHHHHCCC-ceEEEE
Q 044927          395 ILQRIIREEFPG-STVITV  412 (467)
Q Consensus       395 ~i~~~l~~~~~~-~tvi~i  412 (467)
                      ...+.+....++ ++++++
T Consensus       197 ~~l~~i~~~~~~~~~il~S  215 (235)
T 3llm_A          197 VVLRDVVQAYPEVRIVLMS  215 (235)
T ss_dssp             HHHHHHHHHCTTSEEEEEE
T ss_pred             HHHHHHHhhCCCCeEEEEe
Confidence            344444444333 444444

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.63  E-value=1.4e-05  Score=75.25  Aligned_cols=69  Identities=19%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEE--------EcCEeCCCCC-HHHHhcccEEEcC------CCcccc
Q 044927          248 GTRVGVVGRTGSGKTTLISALF---RLVEPENGRIL--------IDGLDICSMG-LKDLRTKLSIIPQ------EPTLFR  309 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~---gl~~p~~G~i~--------i~g~~i~~~~-~~~~r~~i~~v~Q------~~~lf~  309 (467)
                      .-+++|.||+||||||+.+.|+   |+...+.|.++        -.|.++.+.. ..++...+.+.++      ..+++.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g   88 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG   88 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence            4589999999999999999998   66556667663        3466555432 3345556666653      333444


Q ss_pred             ccHHHhc
Q 044927          310 GSVRTNL  316 (467)
Q Consensus       310 ~tv~enl  316 (467)
                      ..|.++|
T Consensus        89 ~~v~~~i   95 (233)
T 3r20_A           89 EDVSSEI   95 (233)
T ss_dssp             EECTTGG
T ss_pred             eehhhhh
Confidence            4555554

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.60  E-value=9.8e-06  Score=74.72  Aligned_cols=42  Identities=24%  Similarity=0.275  Sum_probs=37.2

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEEcCE
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG--RILIDGL  284 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G--~i~i~g~  284 (467)
                      +.+++|.++.|+|++||||||+.+.|.+.+.|..|  .+.++|.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence            45678999999999999999999999999988888  8888753

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.58  E-value=0.0002  Score=70.35  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=29.6

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      .|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~   90 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK   90 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            5777765689999999999999999999888774

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.57  E-value=3.8e-05  Score=66.99  Aligned_cols=30  Identities=37%  Similarity=0.687  Sum_probs=24.8

Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      ++..+++.+| ..+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            4455666655 88999999999999999987

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.55  E-value=4.9e-05  Score=68.52  Aligned_cols=47  Identities=28%  Similarity=0.426  Sum_probs=27.2

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc----CCCC----CccEEEEcCE
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LVEP----ENGRILIDGL  284 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g----l~~p----~~G~i~i~g~  284 (467)
                      +++++|++.++. +++++|++|+|||||++.+.+    .+.|    +.+.+.++|.
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~   67 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI   67 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence            688999988877 789999999999999999997    2333    3455556654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.55  E-value=8.4e-05  Score=72.22  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=27.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRI  279 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i  279 (467)
                      ...+.++||+|+||||+++.+++...+.+|.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            35789999999999999999999887766643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.54  E-value=5.6e-05  Score=67.04  Aligned_cols=27  Identities=33%  Similarity=0.555  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++|.+++|+|++|+|||||++.++|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999999999864

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.54  E-value=0.00041  Score=69.36  Aligned_cols=35  Identities=29%  Similarity=0.276  Sum_probs=28.3

Q ss_pred             eecceeEE---EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          237 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       237 ~L~~isl~---i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .|+.+ +.   +++|+.+.|.||+|+|||||...++.-.
T Consensus        50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45554 33   8899999999999999999998777543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.51  E-value=1.5e-05  Score=78.86  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=34.2

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                      +++++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~  175 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR  175 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence            667999999 6788998888898888876656667778876654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.50  E-value=9.2e-05  Score=72.74  Aligned_cols=28  Identities=25%  Similarity=0.245  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      ++..+.|.||+|+|||||++.+++...+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~   63 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK   63 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            3567899999999999999999986643

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.49  E-value=1.3e-05  Score=73.37  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=26.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ...+|..++|+|||||||||+.+.|...++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            457899999999999999999999998764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.47  E-value=8.2e-05  Score=67.68  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      ..+.|.||+|+|||||++.++.....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999976543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.45  E-value=1.8e-05  Score=77.32  Aligned_cols=49  Identities=20%  Similarity=0.205  Sum_probs=42.5

Q ss_pred             cc-eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 044927          239 KG-ITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICS  288 (467)
Q Consensus       239 ~~-isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~  288 (467)
                      ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            34 677766 99999999999999999999999999888999988777654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.39  E-value=0.00029  Score=68.63  Aligned_cols=30  Identities=27%  Similarity=0.268  Sum_probs=27.0

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.++++..+.|.||+|+|||||++.+++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            456889999999999999999999999865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.36  E-value=0.00038  Score=66.72  Aligned_cols=28  Identities=25%  Similarity=0.307  Sum_probs=24.5

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.++..+.|.||+|+||||+++.+++.+
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4567789999999999999999998764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.31  E-value=1.3e-07  Score=90.87  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=64.8

Q ss_pred             hCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE--EEeeCCCCCCCHHH---------HHHHHHHHHHHCCCceEE
Q 044927          342 RLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI--LVLDEATASIDSAT---------DAILQRIIREEFPGSTVI  410 (467)
Q Consensus       342 ~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i--liLDEpts~LD~~~---------~~~i~~~l~~~~~~~tvi  410 (467)
                      .++.++++.+++++..+|+|  ||++++|+++.+|++  +|+||+|+++|...         +...++.++...+|+|.+
T Consensus       157 ~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~  234 (261)
T 2eyu_A          157 VLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITL  234 (261)
T ss_dssp             HHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCH
T ss_pred             HHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCH
Confidence            45678999999999999999  999999999999999  99999999999863         345777787778899999


Q ss_pred             EEccChh
Q 044927          411 TVAHRVP  417 (467)
Q Consensus       411 ~itH~l~  417 (467)
                      .++||++
T Consensus       235 ~~a~r~~  241 (261)
T 2eyu_A          235 EDAMEAS  241 (261)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9999875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.31  E-value=9.6e-05  Score=66.48  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             ceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          240 GITCTFKEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       240 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      ++|++.++|..++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888899999999999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.29  E-value=7.6e-05  Score=69.17  Aligned_cols=27  Identities=26%  Similarity=0.228  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++..+.|.||+|+||||+++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999987554

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.27  E-value=7.9e-05  Score=66.94  Aligned_cols=39  Identities=38%  Similarity=0.612  Sum_probs=32.7

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-EEcC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI-LIDG  283 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i-~i~g  283 (467)
                      .++|..+.|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~   49 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG   49 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence            45789999999999999999999999888776766 3443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.25  E-value=0.00091  Score=57.54  Aligned_cols=40  Identities=15%  Similarity=0.207  Sum_probs=29.0

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccC
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR  415 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~  415 (467)
                      +..+|++||.- .|++..+..+.+.+.....+..+|.+|++
T Consensus        76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~  115 (145)
T 3n70_A           76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT  115 (145)
T ss_dssp             TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred             CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence            45689999984 68888888888888554445566666664

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.24  E-value=0.00027  Score=61.91  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      -+++++|++|+|||||++.+.|...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCe
Confidence            3689999999999999999998654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.23  E-value=0.00014  Score=73.49  Aligned_cols=41  Identities=24%  Similarity=0.538  Sum_probs=34.0

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcC-----------CCCCccEEEEcCE
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRL-----------VEPENGRILIDGL  284 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl-----------~~p~~G~i~i~g~  284 (467)
                      .+..|.+++|||++|+|||||++.|+|.           .+|..|.+.++|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            3567889999999999999999999998           6788898887663

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.22  E-value=0.0011  Score=68.27  Aligned_cols=173  Identities=16%  Similarity=0.255  Sum_probs=93.4

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEE-EcCEeCCCCCHHHHhcccEEEcCCCccccccHHH
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RIL-IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRT  314 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e  314 (467)
                      .|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+. +..    +.+..++..++-  .+...+-.    +
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~--~~~~~i~~----~  258 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMM--CSEARIDM----N  258 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHH--HHHTTCCT----T
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHH--HHHcCCCH----H
Confidence            46666656899999999999999999999888765543223 333 332    344444443321  00000000    0


Q ss_pred             hcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc--CCCCEEEeeCCCCCCCH--
Q 044927          315 NLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL--KRNRILVLDEATASIDS--  390 (467)
Q Consensus       315 nl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~--~~p~iliLDEpts~LD~--  390 (467)
                      .+. .+..++++..+..+.+   +.+...|--    +.+ ...+|..+  ..+.+|.+.  .+|+++++|..+.-.+.  
T Consensus       259 ~l~-~g~l~~~~~~~~~~a~---~~l~~~~l~----i~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~~~  327 (444)
T 2q6t_A          259 RVR-LGQLTDRDFSRLVDVA---SRLSEAPIY----IDD-TPDLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGPGS  327 (444)
T ss_dssp             TCC-GGGCCHHHHHHHHHHH---HHHHTSCEE----EEC-CTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC--
T ss_pred             HHh-CCCCCHHHHHHHHHHH---HHHhcCCEE----EEC-CCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCCcC
Confidence            111 0123444443332221   122222211    111 13456554  355666665  57999999999865432  


Q ss_pred             ----HH-H---HHHHHHHHHHC--CCceEEEEccC-------------hh------HHh-hcCEEEEEeC
Q 044927          391 ----AT-D---AILQRIIREEF--PGSTVITVAHR-------------VP------TIT-DSDMFMVLSY  430 (467)
Q Consensus       391 ----~~-~---~~i~~~l~~~~--~~~tvi~itH~-------------l~------~~~-~~d~i~vl~~  430 (467)
                          .+ .   ..+.+.|+.+.  .+++||+++|-             ++      .++ .||.|+.|..
T Consensus       328 ~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          328 GKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence                11 1   24445555533  27899999981             11      233 4899999953

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.22  E-value=2.5e-05  Score=78.35  Aligned_cols=58  Identities=31%  Similarity=0.335  Sum_probs=36.2

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      .+.+.++|++..|+.  +.++++++|+|      +|+|++|+|||||++.|.+...+..|.+..++
T Consensus        15 ~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~   72 (361)
T 2qag_A           15 PGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA   72 (361)
T ss_dssp             ------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred             CceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence            346888999888853  34789999876      99999999999999999987666555544333

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.20  E-value=0.00019  Score=63.94  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+++++|++|+|||||++.+++-
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999984

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.17  E-value=0.00041  Score=71.67  Aligned_cols=58  Identities=7%  Similarity=0.131  Sum_probs=37.4

Q ss_pred             hhHHHHHHHHHHhcCCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHCCCceEEEEccChhHHh
Q 044927          360 VGQRQLFCLGRVLLKRNRILVLDEATA-SIDSATDAILQRIIREEFPGSTVITVAHRVPTIT  420 (467)
Q Consensus       360 gGq~Qrl~iARal~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~  420 (467)
                      +.|.+....+...+++++++|+..... ++.... ..+.+.+++  .++.+|++.+..+...
T Consensus        87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~~  145 (456)
T 4dcu_A           87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNTE  145 (456)
T ss_dssp             CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC----
T ss_pred             HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccchh
Confidence            347777888888888999888665443 454443 455555544  4788899988877543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.16  E-value=0.00012  Score=67.27  Aligned_cols=45  Identities=11%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI  419 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  419 (467)
                      .+|.++++||+-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~  169 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  169 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence            4578999999866 78888778887776655567888888876643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.15  E-value=0.00022  Score=65.37  Aligned_cols=30  Identities=37%  Similarity=0.687  Sum_probs=24.5

Q ss_pred             cceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          239 KGITCTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       239 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      .+.++++.+| ..+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            3455666664 89999999999999999885

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.09  E-value=0.00023  Score=69.88  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=24.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      -+++|+++.|.||+|+|||||+..++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999988774

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.07  E-value=0.00028  Score=64.18  Aligned_cols=22  Identities=36%  Similarity=0.708  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|+|++||||||+.+.|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999993

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.05  E-value=8.1e-06  Score=82.04  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=22.8

Q ss_pred             CCCCCCChhHHHHHHHHHHh---cC--CCCEEEeeCCC
Q 044927          353 DEGENWSVGQRQLFCLGRVL---LK--RNRILVLDEAT  385 (467)
Q Consensus       353 ~~g~~LSgGq~Qrl~iARal---~~--~p~iliLDEpt  385 (467)
                      ++|.++|+||+||.+++|+|   ++  +++++++|||+
T Consensus       292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            56778999999999999999   77  89999999997

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.05  E-value=0.0003  Score=62.79  Aligned_cols=26  Identities=42%  Similarity=0.730  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPE  275 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~  275 (467)
                      +++|+|++|+|||||++.+++...+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~~   29 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKSD   29 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC----
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence            68999999999999999999975443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.05  E-value=0.00012  Score=66.63  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL  284 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~  284 (467)
                      ..+++|+|++||||||+.+.|++.+    |...+++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d   50 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD   50 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence            4689999999999999999998865    45556553

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.04  E-value=0.0002  Score=64.16  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEe
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPE---NGRILIDGLD  285 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~---~G~i~i~g~~  285 (467)
                      -..++|+|+||||||||++.|++.+++.   -|.|..++.+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            3689999999999999999999876543   3777776644

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.02  E-value=0.00028  Score=71.05  Aligned_cols=57  Identities=18%  Similarity=0.156  Sum_probs=43.6

Q ss_pred             HHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEE
Q 044927          365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV  427 (467)
Q Consensus       365 rl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v  427 (467)
                      +.+|+++|..+|+++++|||+   |+++..   ..++....|.+++.++|..+....+||++.
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~  255 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVD  255 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence            569999999999999999999   776533   344445568899999998775555666543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.98  E-value=0.00018  Score=68.21  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=33.2

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI  286 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i  286 (467)
                      ..+++..+.|+|++||||||+.+.|.+.+.  .|.+.++|-.+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            456788999999999999999999998765  35677777433

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.97  E-value=9.2e-05  Score=70.14  Aligned_cols=44  Identities=30%  Similarity=0.387  Sum_probs=28.9

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD  285 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~  285 (467)
                      ++++++..++|  +.|+||+|+||||+++++++.+...  -+.+++.+
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~   80 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD   80 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence            44444445554  8999999999999999999876422  35555543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.93  E-value=0.00036  Score=70.47  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=44.1

Q ss_pred             CCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHCC-CceEEEEccChhHH-------------hhcCEEEEEeCC
Q 044927          374 KRNRILVLDEATASID---SATDAILQRIIREEFP-GSTVITVAHRVPTI-------------TDSDMFMVLSYG  431 (467)
Q Consensus       374 ~~p~iliLDEpts~LD---~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~-------------~~~d~i~vl~~G  431 (467)
                      ..|.++++||+-.-++   +.....+.+.+++.++ +..++++||+++.+             .+|+..+++...
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~  335 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG  335 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence            3588999999999885   5667778888877544 88999999998754             236667776653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.86  E-value=0.0047  Score=63.23  Aligned_cols=35  Identities=31%  Similarity=0.394  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI  281 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i  281 (467)
                      ++.+++++|++|+||||++..|+..+....-+|.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            45799999999999999999999877654445544

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.85  E-value=0.00047  Score=61.53  Aligned_cols=26  Identities=35%  Similarity=0.382  Sum_probs=22.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999999853

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.83  E-value=0.00017  Score=71.67  Aligned_cols=36  Identities=33%  Similarity=0.551  Sum_probs=32.8

Q ss_pred             eecceeEEEeCCcE--EEEEcCCCCcHHHHHHHHhcCC
Q 044927          237 VLKGITCTFKEGTR--VGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       237 ~L~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++.+++.+++|+.  ++|+|++||||||+.++|++.+
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            68888999999999  9999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.76  E-value=0.0012  Score=58.95  Aligned_cols=35  Identities=40%  Similarity=0.777  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc-C----CCCCcc----EEEEcCE
Q 044927          250 RVGVVGRTGSGKTTLISALFR-L----VEPENG----RILIDGL  284 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g-l----~~p~~G----~i~i~g~  284 (467)
                      +++|+|++|+|||||++.+.+ .    +.|+.|    .+.++|.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   65 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ   65 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence            689999999999999976654 3    556656    5556654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.74  E-value=0.0055  Score=57.51  Aligned_cols=26  Identities=27%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +..-+.|.||+|+||||+++.++..+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34568899999999999999998743

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.74  E-value=0.0027  Score=62.99  Aligned_cols=38  Identities=26%  Similarity=0.462  Sum_probs=29.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      .+|..+.|.||+|+||||+++.++.........+.+++
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~  105 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG  105 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence            45678999999999999999999987754334444544

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.73  E-value=0.011  Score=57.06  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +..+.|.||+|+||||+++.++..+
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999888765

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.69  E-value=0.0009  Score=59.18  Aligned_cols=26  Identities=15%  Similarity=0.316  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      |..+.|+|++||||||+.+.|...+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999999997654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.67  E-value=0.00083  Score=62.76  Aligned_cols=35  Identities=17%  Similarity=0.335  Sum_probs=27.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhc---CCCCCccEE
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFR---LVEPENGRI  279 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~g---l~~p~~G~i  279 (467)
                      -++|.+++|+|++||||||+.+.|++   +..++.|.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~   50 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   50 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence            46789999999999999999999986   333444544

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.65  E-value=0.0067  Score=60.71  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      -+++|+.+.|.||+|+|||||...++.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            378999999999999999999977764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.64  E-value=0.00088  Score=60.49  Aligned_cols=31  Identities=32%  Similarity=0.485  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      ..+++|+|++||||||+.+.|+..     |-..+|.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            457999999999999999999985     6666664

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.64  E-value=0.003  Score=57.01  Aligned_cols=44  Identities=23%  Similarity=0.285  Sum_probs=32.3

Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                      .++.++++||. ..+++.....+.+.+.+...+..+|+++++...
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~  144 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSR  144 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence            36889999996 446777777788888775556677777777653

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.63  E-value=0.0048  Score=61.40  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=23.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+...+.|.||+|+||||+++.++...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.63  E-value=0.00099  Score=59.23  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .-+++++|++|+|||||++.+.+-
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999999975

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.63  E-value=0.00094  Score=58.49  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|+|++||||||+.+.|...+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.62  E-value=0.00087  Score=60.48  Aligned_cols=23  Identities=22%  Similarity=0.608  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999844

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.59  E-value=0.0015  Score=65.27  Aligned_cols=36  Identities=36%  Similarity=0.671  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhc-----------CCCCCccEEEEcC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFR-----------LVEPENGRILIDG  283 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~g-----------l~~p~~G~i~i~g  283 (467)
                      |-+++|||.+|+|||||++.|++           -..|+.|.+.+++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            45799999999999999999998           3467788887765

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.58  E-value=0.00028  Score=64.53  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPE  275 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~  275 (467)
                      +++|+|++||||||+++.|...+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999887653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.58  E-value=0.0012  Score=65.70  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=24.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ..+..+.|.||+|+||||+++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.56  E-value=0.0012  Score=58.94  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +|.++.|.|++||||||+.+.|...+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998744

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.48  E-value=0.0013  Score=58.93  Aligned_cols=27  Identities=33%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++..+.|+|++||||||+.+.|...+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999998643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.48  E-value=0.0013  Score=57.34  Aligned_cols=19  Identities=32%  Similarity=0.508  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 044927          250 RVGVVGRTGSGKTTLISAL  268 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l  268 (467)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.48  E-value=0.0014  Score=65.81  Aligned_cols=31  Identities=32%  Similarity=0.665  Sum_probs=26.5

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      +++..+++.+| ...|+|||||||||++.+|.
T Consensus        16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            46677777774 88999999999999999886

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.47  E-value=0.0014  Score=58.32  Aligned_cols=26  Identities=35%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999997644

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.47  E-value=0.0014  Score=63.40  Aligned_cols=36  Identities=39%  Similarity=0.517  Sum_probs=28.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      .+|..+.|+||+||||||+.+.|+.-++  .|.+.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            3467899999999999999999987543  35667765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.44  E-value=0.0013  Score=64.27  Aligned_cols=46  Identities=28%  Similarity=0.354  Sum_probs=35.2

Q ss_pred             ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc----CCCCCccEEEEc
Q 044927          236 LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR----LVEPENGRILID  282 (467)
Q Consensus       236 ~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g----l~~p~~G~i~i~  282 (467)
                      ..+++..+.+ .|.-++|.|+||+||||+...+.+    +...+...|...
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~  182 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREI  182 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEc
Confidence            3678887877 789999999999999999999887    444444444443

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.44  E-value=0.0016  Score=58.77  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +|..++|.|+.||||||+.+.|...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999999876

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.43  E-value=0.004  Score=57.89  Aligned_cols=51  Identities=22%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccC-----------hhHHhhcCEEEEEe
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR-----------VPTITDSDMFMVLS  429 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------l~~~~~~d~i~vl~  429 (467)
                      +|+++++||.-- ++.+.-..+ ..+.+  .+.++|++-|+           .+.+..||+|.-|.
T Consensus        89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999964 665432222 33333  38999999992           22345699998864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.43  E-value=0.0014  Score=59.28  Aligned_cols=44  Identities=27%  Similarity=0.614  Sum_probs=29.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC-------------CCCccEEEEcCEeCCCCCHHHHhc
Q 044927          251 VGVVGRTGSGKTTLISALFRLV-------------EPENGRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl~-------------~p~~G~i~i~g~~i~~~~~~~~r~  296 (467)
                      +.|+||||||||||++.|..-+             +|-.|++  ||++..-++.++..+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~   60 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKS   60 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHH
Confidence            6899999999999999987443             3344554  666555445554433

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.38  E-value=0.0017  Score=59.61  Aligned_cols=32  Identities=38%  Similarity=0.473  Sum_probs=25.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      .+-+++|.|++||||||+.+.|..+     |...+|.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~   34 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA   34 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence            3568999999999999999999983     4445543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.35  E-value=0.012  Score=57.71  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+..-+.|.||+|+|||||++.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455678999999999999999999865

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.34  E-value=0.0037  Score=61.28  Aligned_cols=28  Identities=36%  Similarity=0.287  Sum_probs=25.0

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      -.+++|..+.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3678899999999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.32  E-value=0.0016  Score=61.63  Aligned_cols=24  Identities=25%  Similarity=0.169  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ..++|+||+|||||||.+.|++-+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.30  E-value=0.0018  Score=57.53  Aligned_cols=27  Identities=30%  Similarity=0.214  Sum_probs=23.3

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++..+.|+|++||||||+.+.|...+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            457789999999999999999998543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.28  E-value=0.0072  Score=51.69  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=23.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +.+.-+.|.||+|+|||++.+.+.....
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            3456789999999999999999987643

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.28  E-value=0.017  Score=68.12  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI  279 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i  279 (467)
                      +++|+.+.|.||+|+|||||+..++.......|.+
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V  763 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC  763 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence            89999999999999999999999887655444444

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.27  E-value=0.002  Score=57.71  Aligned_cols=27  Identities=33%  Similarity=0.373  Sum_probs=23.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++.+++|+|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998644

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.27  E-value=0.019  Score=58.39  Aligned_cols=29  Identities=28%  Similarity=0.271  Sum_probs=24.6

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .-++...+.++|++||||||+.+.|+.-+
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            34567899999999999999999998643

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.25  E-value=0.0022  Score=58.27  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=23.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+|.+++|.|+.||||||+.+.|...+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999998643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.25  E-value=0.0023  Score=58.01  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      +|.+++|.|++||||||+.+.|...+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4778999999999999999999876553

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.19  E-value=0.0025  Score=58.01  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=24.1

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++|.+++|.|+.||||||+.+.|...+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999998643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.19  E-value=0.0024  Score=56.21  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ..+.|+|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999987

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.18  E-value=0.002  Score=56.93  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.14  E-value=0.0065  Score=53.01  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=22.6

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      ++.-+++++|++|+|||||++.+.+-
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999999874

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.13  E-value=0.0024  Score=60.91  Aligned_cols=24  Identities=42%  Similarity=0.580  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +++++|++|||||||++.++|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            689999999999999999999753

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.13  E-value=0.016  Score=59.59  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=27.5

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      -|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus       186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            3555443589999999999999999999877664

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.12  E-value=0.0028  Score=56.51  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.+++|+|++||||||+.+.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999987543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.10  E-value=0.0029  Score=56.98  Aligned_cols=22  Identities=41%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999999764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.10  E-value=0.0018  Score=57.60  Aligned_cols=26  Identities=35%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      ..++|+|++|||||||+..|++.+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            47999999999999999999987654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.09  E-value=0.0051  Score=53.13  Aligned_cols=21  Identities=38%  Similarity=0.708  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            689999999999999999987

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.08  E-value=0.0023  Score=56.72  Aligned_cols=27  Identities=22%  Similarity=0.253  Sum_probs=18.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++..+.|.|++||||||+.+.|...+
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            357789999999999999999998543

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.04  E-value=0.011  Score=58.50  Aligned_cols=43  Identities=12%  Similarity=0.164  Sum_probs=32.3

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                      +++++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus       119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~  161 (373)
T 1jr3_A          119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK  161 (373)
T ss_dssp             SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred             CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence            57899999964 47777777888888765456677888887653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.03  E-value=0.0025  Score=57.21  Aligned_cols=28  Identities=25%  Similarity=0.356  Sum_probs=24.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+++.+++|+|++||||||+.+.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567899999999999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.03  E-value=0.0031  Score=54.42  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.|..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            68999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.01  E-value=0.0032  Score=56.08  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++.|.|++||||||+.+.|..-+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999987554

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.98  E-value=0.0033  Score=54.24  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.0034  Score=55.86  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .-+++++|++|+|||||++.+.+-.
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3489999999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.92  E-value=0.0041  Score=57.12  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=23.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++|-.+.|+|+.||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            357789999999999999999998654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.92  E-value=0.004  Score=54.13  Aligned_cols=23  Identities=39%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            68999999999999999998753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.91  E-value=0.0042  Score=58.93  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|||||||++.+.|-.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999874

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.90  E-value=0.0038  Score=53.59  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999998853

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.90  E-value=0.0036  Score=53.61  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.89  E-value=0.0039  Score=53.44  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.88  E-value=0.0042  Score=53.74  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            58999999999999999998654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.84  E-value=0.0043  Score=57.35  Aligned_cols=27  Identities=30%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++.++.|+|++||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998644

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.84  E-value=0.0045  Score=54.09  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.83  E-value=0.0041  Score=53.42  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.82  E-value=0.0043  Score=53.61  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            68999999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.81  E-value=0.0041  Score=53.74  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.80  E-value=0.0044  Score=53.62  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.79  E-value=0.0042  Score=56.12  Aligned_cols=23  Identities=22%  Similarity=0.327  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|.|++||||||+.+.|++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.79  E-value=0.0044  Score=53.35  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.79  E-value=0.0052  Score=55.51  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+-+++|+|+.||||||+.+.|...+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.79  E-value=0.0045  Score=59.28  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+++++|++|||||||++.++|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999964

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.78  E-value=0.018  Score=63.10  Aligned_cols=23  Identities=39%  Similarity=0.462  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+.+.||+|+|||++.+.++...
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999875

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.78  E-value=0.0045  Score=56.51  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|.|++||||||+.+.|+.-+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999996543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.78  E-value=0.0044  Score=53.41  Aligned_cols=22  Identities=14%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.78  E-value=0.0045  Score=54.10  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            68999999999999999988643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.77  E-value=0.0043  Score=55.21  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      --+++++|++|+|||||++.+.+-
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999875

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.76  E-value=0.0045  Score=59.15  Aligned_cols=23  Identities=48%  Similarity=0.671  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++++|++|+|||||++.|++--
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.76  E-value=0.0047  Score=53.91  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .++++|++|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.74  E-value=0.0045  Score=54.87  Aligned_cols=24  Identities=42%  Similarity=0.684  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+++++|++|+|||||++.+.+-.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            379999999999999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.73  E-value=0.0046  Score=54.00  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.73  E-value=0.0051  Score=55.59  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ..+++|.|++||||||+.+.|+..+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999998544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.72  E-value=0.0092  Score=54.03  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999988753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.70  E-value=0.0044  Score=57.00  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.69  E-value=0.0045  Score=61.98  Aligned_cols=22  Identities=50%  Similarity=0.715  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|||++|+|||||++.|+|.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.67  E-value=0.0058  Score=53.46  Aligned_cols=24  Identities=29%  Similarity=0.330  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+.++|.|+.||||||+.+.|+..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999763

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.67  E-value=0.0052  Score=52.94  Aligned_cols=21  Identities=19%  Similarity=0.553  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            689999999999999999986

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.66  E-value=0.0054  Score=56.06  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|.|++||||||+.+.|+.-+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999997544

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.65  E-value=0.0058  Score=53.27  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|.|++||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.65  E-value=0.0052  Score=54.29  Aligned_cols=23  Identities=35%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            58999999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.64  E-value=0.0057  Score=54.36  Aligned_cols=25  Identities=36%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.+++|+|++||||||+.+.|...+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999997643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.63  E-value=0.0043  Score=54.56  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +.-+++++|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345899999999999999999874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.63  E-value=0.005  Score=53.92  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+++|.|++||||||+.+.|...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998643

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.63  E-value=0.0058  Score=54.46  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|.|+.||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.62  E-value=0.0048  Score=54.84  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+++|+|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999997643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.62  E-value=0.0056  Score=53.95  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.61  E-value=0.0056  Score=54.42  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+++-
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999975

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.60  E-value=0.006  Score=54.11  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      +++++|++|+|||||++.+.|-..+
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhccc
Confidence            6899999999999999999987643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.60  E-value=0.0056  Score=54.49  Aligned_cols=22  Identities=41%  Similarity=0.674  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|+|++|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.58  E-value=0.0066  Score=52.96  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.57  E-value=0.0092  Score=52.76  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.57  E-value=0.006  Score=52.44  Aligned_cols=21  Identities=38%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999975

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.57  E-value=0.006  Score=52.77  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhc
Q 044927          248 GTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      .=+++++|++|+|||||++.+.+
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34789999999999999999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.56  E-value=0.0059  Score=53.92  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.53  E-value=0.0059  Score=53.16  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999853

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.52  E-value=0.0067  Score=54.97  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+++|+|+.||||||+.+.|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999999865

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.50  E-value=0.0039  Score=60.31  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=19.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++-+++|.||+||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998744

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.50  E-value=0.0071  Score=56.73  Aligned_cols=26  Identities=31%  Similarity=0.247  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++-+++|.||+||||||+.+.|+.-+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            56689999999999999999997544

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.48  E-value=0.0073  Score=57.24  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      ++..+.|+|++||||||+.+.|...
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.48  E-value=0.0067  Score=53.05  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.47  E-value=0.0067  Score=53.78  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.46  E-value=0.0068  Score=52.76  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.44  E-value=0.007  Score=53.12  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            6899999999999999999853

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.44  E-value=0.0071  Score=52.91  Aligned_cols=22  Identities=23%  Similarity=0.558  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.43  E-value=0.012  Score=51.45  Aligned_cols=21  Identities=19%  Similarity=0.507  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            689999999999999999983

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.42  E-value=0.0072  Score=58.75  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|+|++|+|||||++.++|-
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.42  E-value=0.0072  Score=56.87  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+++|.|++||||||+.+.|...+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999997743

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.42  E-value=0.0072  Score=56.96  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+++|+|++|+|||||++.|+|-.
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999743

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.38  E-value=0.0083  Score=52.94  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      ++.=+++++|++|+|||||++.+.+-
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34457899999999999999999864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.38  E-value=0.0093  Score=58.79  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++..+.|+||+|||||||...|+.-+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            567899999999999999999998763

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.37  E-value=0.0072  Score=53.20  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.32  E-value=0.008  Score=53.33  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.32  E-value=0.0078  Score=53.69  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.31  E-value=0.0081  Score=52.79  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6799999999999999999853

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.30  E-value=0.0082  Score=53.91  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            68999999999999999998643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.29  E-value=0.0082  Score=53.79  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .++++|++|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999853

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.28  E-value=0.022  Score=54.95  Aligned_cols=43  Identities=19%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                      +++++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus       107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~  149 (323)
T 1sxj_B          107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK  149 (323)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred             CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence            48899999964 35666666777777765556777888877653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.27  E-value=0.0091  Score=53.29  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.27  E-value=0.0083  Score=54.56  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+++++|++|+|||||++.+.+-.
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999999754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.27  E-value=0.0082  Score=53.46  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      =.++++|++|+|||||++.+.+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            3789999999999999999986

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.26  E-value=0.0082  Score=53.33  Aligned_cols=23  Identities=39%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.25  E-value=0.0051  Score=56.17  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .-+++++|++|+|||||++.++|-.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.25  E-value=0.0086  Score=53.18  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.25  E-value=0.0088  Score=58.26  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+++|+|++|+|||||++.|.|-
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            48999999999999999999985

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.24  E-value=0.044  Score=53.20  Aligned_cols=43  Identities=16%  Similarity=0.330  Sum_probs=32.5

Q ss_pred             CCCEEEeeCCCCCCC-HHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927          375 RNRILVLDEATASID-SATDAILQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       375 ~p~iliLDEpts~LD-~~~~~~i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                      +++++++||.-. +. ......+.+.+.+...+..+|++|++...
T Consensus       105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~  148 (324)
T 3u61_B          105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG  148 (324)
T ss_dssp             CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred             CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence            789999999843 44 66667777777776566788888888764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.24  E-value=0.0091  Score=54.79  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +|-.+.|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999997654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.24  E-value=0.0088  Score=57.19  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|||||||++.++|-.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.23  E-value=0.009  Score=52.99  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999853

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.22  E-value=0.0096  Score=54.83  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+++++|++|+|||||++.+.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.22  E-value=0.0097  Score=53.37  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.22  E-value=0.014  Score=53.09  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .++..-+.+ .|..+.|+||+|||||||...|+.-
T Consensus        24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            466665554 5788999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.21  E-value=0.009  Score=53.54  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|+|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999999863

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.21  E-value=0.0092  Score=52.36  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            689999999999999999874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.21  E-value=0.0086  Score=53.82  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      =+++++|++|+|||||++.+.+-.
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            478999999999999999998743

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.19  E-value=0.0098  Score=56.38  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.++|-.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999854

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.19  E-value=0.0092  Score=57.32  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhc
Q 044927          248 GTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ..+++|.|++||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999984

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.16  E-value=0.0091  Score=53.13  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            6899999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.16  E-value=0.011  Score=52.71  Aligned_cols=23  Identities=35%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+++++|++|+|||||++.+.+-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999873

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.15  E-value=0.015  Score=52.82  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.15  E-value=0.01  Score=53.42  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.14  E-value=0.011  Score=56.27  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCccE
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPENGR  278 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~  278 (467)
                      -+++++|.+|+|||||++.|.|-..+..|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            489999999999999999999876554443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.13  E-value=0.0098  Score=52.90  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.12  E-value=0.011  Score=54.68  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997644

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.11  E-value=0.011  Score=52.42  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhc
Q 044927          248 GTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      .=+++++|++|+|||||++.+.+
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34789999999999999999985

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.11  E-value=0.01  Score=54.25  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998644

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.10  E-value=0.085  Score=63.12  Aligned_cols=29  Identities=31%  Similarity=0.402  Sum_probs=25.6

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +++|+.+.|.||+|+|||||+..++.-..
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a  408 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ  408 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999888775443

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.07  E-value=0.01  Score=57.48  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++|+|+.|||||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.06  E-value=0.0096  Score=52.46  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.06  E-value=0.012  Score=52.69  Aligned_cols=25  Identities=28%  Similarity=0.571  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      +++++|++|+|||||++.+.+-+.+
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~~   46 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMSP   46 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCC
Confidence            7899999999999999999885443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.04  E-value=0.027  Score=62.60  Aligned_cols=27  Identities=30%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPE  275 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~  275 (467)
                      ..+.|.||+|+|||++.+.|.......
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~  615 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDT  615 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            478999999999999999999877543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.04  E-value=0.012  Score=51.38  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -=+++++|++|+|||||++.+.+-
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999999853

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.04  E-value=0.01  Score=53.41  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.04  E-value=0.011  Score=52.80  Aligned_cols=23  Identities=26%  Similarity=0.650  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      =+++++|++|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.04  E-value=0.011  Score=52.51  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999863

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.03  E-value=0.011  Score=52.68  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.03  E-value=0.011  Score=53.03  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .=+++++|+.|+|||||++.+.+-.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCC
Confidence            3478999999999999999998643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.02  E-value=0.011  Score=52.33  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.01  E-value=0.011  Score=53.50  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -+++++|++|+|||||++.+.+-
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            47999999999999999999874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.01  E-value=0.011  Score=53.29  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      =.++++|++|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999854

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.00  E-value=0.013  Score=57.26  Aligned_cols=25  Identities=32%  Similarity=0.359  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +..++|+||||||||||...|+.-+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998765

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.98  E-value=0.014  Score=51.21  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=23.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ..+..+.|.||+|+||||+++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998765

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.98  E-value=0.012  Score=55.80  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.++|--
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67999999999999999999843

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.97  E-value=0.012  Score=56.07  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.|+|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.96  E-value=0.012  Score=53.51  Aligned_cols=21  Identities=38%  Similarity=0.613  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus        36 ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            689999999999999999986

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.96  E-value=0.012  Score=58.17  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ..++|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4799999999999999999987654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.95  E-value=0.011  Score=53.83  Aligned_cols=24  Identities=38%  Similarity=0.580  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -.++++|++|+|||||++.+++-.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.94  E-value=0.011  Score=55.07  Aligned_cols=28  Identities=25%  Similarity=0.360  Sum_probs=22.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .+|..+.+.|++||||||+++.|...+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.93  E-value=0.013  Score=53.12  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998743

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.92  E-value=0.012  Score=54.60  Aligned_cols=24  Identities=25%  Similarity=0.188  Sum_probs=18.2

Q ss_pred             CCcE-EEEEcCCCCcHHHHHHHHhc
Q 044927          247 EGTR-VGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       247 ~Ge~-~~ivG~sGsGKSTll~~l~g  270 (467)
                      +|+. +.+.|+.|+||||++-.++.
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~   28 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAH   28 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHH
Confidence            4554 77899999999999555543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.92  E-value=0.014  Score=54.05  Aligned_cols=26  Identities=31%  Similarity=0.472  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+..+.|+|+.||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.92  E-value=0.0092  Score=52.16  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999863

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.91  E-value=0.013  Score=52.15  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.91  E-value=0.014  Score=52.29  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      =+++++|++|+|||||++.+.+-
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.90  E-value=0.014  Score=53.68  Aligned_cols=29  Identities=28%  Similarity=0.282  Sum_probs=24.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      .+|..+.+.|+.||||||+++.|...+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999876653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.90  E-value=0.013  Score=52.39  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +.=+++++|++|+|||||++.+.+
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            445799999999999999999975

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.85  E-value=0.012  Score=56.42  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++++|++|+|||||++.|+|-.
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            78999999999999999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.84  E-value=0.0092  Score=52.43  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=9.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.79  E-value=0.013  Score=52.65  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.79  E-value=0.013  Score=60.27  Aligned_cols=42  Identities=33%  Similarity=0.642  Sum_probs=32.6

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI  279 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i  279 (467)
                      +++.+ +.+-+|++++|+|++|+|||||++.|++-.....|.+
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i  182 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI  182 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence            45555 6778999999999999999999999987554333333

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.78  E-value=0.018  Score=52.08  Aligned_cols=24  Identities=38%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+++++|++|+|||||++.+.+-.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998643

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.76  E-value=0.016  Score=54.30  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +|..+.+.|++||||||+++.|...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987664

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.76  E-value=0.096  Score=61.83  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             eecceeEE---EeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          237 VLKGITCT---FKEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       237 ~L~~isl~---i~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -|+.+ +.   +++|+.+.|.||+|+|||||..-++.-
T Consensus       370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~  406 (1706)
T 3cmw_A          370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA  406 (1706)
T ss_dssp             HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            45554 33   899999999999999999998777643

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.74  E-value=0.011  Score=54.01  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +-+++|+|++||||||+.+.|...+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.70  E-value=0.017  Score=53.13  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +|.++.+-|++||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987664

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.68  E-value=0.017  Score=52.97  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6999999999999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.66  E-value=0.015  Score=51.65  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.65  E-value=0.0086  Score=54.46  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999854

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.64  E-value=0.014  Score=53.98  Aligned_cols=29  Identities=28%  Similarity=0.358  Sum_probs=24.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.++..++.|+||.||||+|..+.|+.-|
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34566789999999999999999998654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=94.64  E-value=0.013  Score=51.94  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +.=+++++|++|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            344799999999999999999964

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.64  E-value=0.052  Score=56.12  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=55.3

Q ss_pred             ccccCCCCCCChhHHHHHHHHH--HhcC---------------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEE
Q 044927          349 SSVSDEGENWSVGQRQLFCLGR--VLLK---------------RNRILVLDEATASIDSATDAILQRIIREEFPGSTVIT  411 (467)
Q Consensus       349 t~v~~~g~~LSgGq~Qrl~iAR--al~~---------------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~  411 (467)
                      +........+||||+|-.-+|.  |+++               .=.+++|||+ +-+|.+..+..++.++++  |-=+|+
T Consensus       371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii  447 (483)
T 3euj_A          371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI  447 (483)
T ss_dssp             EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred             ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence            3444455778999999543333  2221               1258999999 999999999999999976  666778


Q ss_pred             EccChhHHhhcCEEEEEe
Q 044927          412 VAHRVPTITDSDMFMVLS  429 (467)
Q Consensus       412 itH~l~~~~~~d~i~vl~  429 (467)
                      +|=. .....+|.++.+-
T Consensus       448 atP~-~i~p~v~~~~~~~  464 (483)
T 3euj_A          448 AAPE-NISPERGTTYKLV  464 (483)
T ss_dssp             EESS-SCCCSSSEEEECC
T ss_pred             ECcc-hhhhccCceEEEE
Confidence            8776 3334588888775

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.63  E-value=0.016  Score=55.71  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ..+.|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.60  E-value=0.019  Score=53.06  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=26.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      ++|..+.+-|+.||||||+++.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999999987764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.58  E-value=0.019  Score=53.24  Aligned_cols=28  Identities=29%  Similarity=0.269  Sum_probs=24.7

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .+|..+.+.|++||||||+.+.|...+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999987654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.57  E-value=0.018  Score=53.57  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +|..++|.|+.||||||+++.|...++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999987663

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.56  E-value=0.017  Score=56.55  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ..+.|+||+|||||||.+.|+.-+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999997653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.48  E-value=0.02  Score=55.65  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ...+.|+||+|||||||...|+.-+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4578999999999999999998665

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.46  E-value=0.22  Score=51.69  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=27.1

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      |+.+---+++|+.+.|.|++|+|||||+.-++--
T Consensus       232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~  265 (503)
T 1q57_A          232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ  265 (503)
T ss_dssp             HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence            4444335899999999999999999998776643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.46  E-value=0.017  Score=52.76  Aligned_cols=24  Identities=38%  Similarity=0.526  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+++|+|++|+|||||++-+++-.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999988653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.45  E-value=0.014  Score=55.15  Aligned_cols=28  Identities=25%  Similarity=0.479  Sum_probs=24.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +++..++|.|+.||||||+.+.|...+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5678999999999999999999987763

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.43  E-value=0.018  Score=51.77  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|+.|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            6899999999999999999764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=94.39  E-value=0.017  Score=50.52  Aligned_cols=29  Identities=21%  Similarity=0.338  Sum_probs=23.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      ..+..+.|.||+|+||||+++.++.....
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            34567899999999999999999876543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=94.39  E-value=0.022  Score=55.39  Aligned_cols=26  Identities=35%  Similarity=0.648  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++-+++++|++|+|||||++.+.+-+
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~   27 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNY   27 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            45689999999999999999987753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.39  E-value=0.019  Score=51.87  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhc
Q 044927          248 GTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      .=+++++|++|+|||||++.+.+
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHh
Confidence            34789999999999999988874

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.39  E-value=0.006  Score=62.45  Aligned_cols=38  Identities=29%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDI  286 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i  286 (467)
                      .+++++|++|+||||++..|++.+.....+|.+-..|.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            58999999999999999999998765445566544443

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.37  E-value=0.032  Score=49.52  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=25.6

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      .++..-+. -.|.-+.|.|+||+||||+...+..
T Consensus         6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            45554444 4588999999999999999987764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.33  E-value=0.0097  Score=53.30  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=4.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.021  Score=52.19  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|+|++|+|||||++.+.+-
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.20  E-value=0.0074  Score=57.06  Aligned_cols=32  Identities=31%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +.+++...++|  +.|.||+|+||||+++.+++.
T Consensus        36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            33444444555  789999999999999999874

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.20  E-value=0.03  Score=51.75  Aligned_cols=25  Identities=48%  Similarity=0.744  Sum_probs=22.4

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      +++|+.+.|.|++|+|||||+.-++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7999999999999999999986543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.18  E-value=0.023  Score=51.81  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      =+++++|++|+|||||++.+.+-
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            37899999999999999999864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=94.14  E-value=0.03  Score=53.82  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPE  275 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~  275 (467)
                      +-.++++|.+|+|||||+|.|.|-....
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~  147 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAK  147 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceee
Confidence            3478999999999999999999875433

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.04  E-value=0.026  Score=56.92  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ...++|+||||||||||...|+.-+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC
Confidence            3478999999999999999998654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.00  E-value=0.025  Score=51.06  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus        11 ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999985

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=93.77  E-value=0.026  Score=56.37  Aligned_cols=25  Identities=44%  Similarity=0.571  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      ++..++++|++|+|||||+|.|.|-
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            5678999999999999999999986

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.76  E-value=0.033  Score=50.92  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.|+||.||||+|..+.|+.-|
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998655

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.74  E-value=0.25  Score=59.23  Aligned_cols=34  Identities=32%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             ceeccee--EEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          236 LVLKGIT--CTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       236 ~~L~~is--l~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      +.|+++.  .-+++|+.+.+.||+|||||||...+.
T Consensus      1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A         1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp             HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence            4677876  579999999999999999999999877

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=93.58  E-value=0.039  Score=50.35  Aligned_cols=26  Identities=31%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      |.+|+|=|+-||||||+++.|...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            57899999999999999999987654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=93.56  E-value=0.01  Score=53.17  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+-.
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999988643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=93.51  E-value=0.028  Score=56.22  Aligned_cols=26  Identities=38%  Similarity=0.539  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++..++++|++|+|||||+|.|.|-.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~~  184 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKEF  184 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhhh
Confidence            57889999999999999999999863

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=93.47  E-value=0.023  Score=51.84  Aligned_cols=21  Identities=38%  Similarity=0.634  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHH-Hhc
Q 044927          250 RVGVVGRTGSGKTTLISA-LFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~-l~g  270 (467)
                      +++++|++|+|||||++. +.|
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~   38 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTG   38 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            589999999999999998 444

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=93.46  E-value=0.034  Score=56.81  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|+|++|+|||||++.|.|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=93.46  E-value=0.036  Score=55.96  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|+|++|+|||||++.|.|--
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999854

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=93.43  E-value=0.31  Score=47.65  Aligned_cols=43  Identities=9%  Similarity=0.138  Sum_probs=30.7

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPT  418 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~  418 (467)
                      +++++|+||+= .|.......+.+.+++-..+..+|++|++++-
T Consensus       108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~  150 (334)
T 1a5t_A          108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPER  150 (334)
T ss_dssp             SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred             CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence            57999999974 35666666777777654445677888888753

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=93.42  E-value=0.028  Score=55.70  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++++|+.|+|||||++.|.|.-
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999999854

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.32  E-value=0.032  Score=49.92  Aligned_cols=52  Identities=12%  Similarity=0.217  Sum_probs=33.0

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChh-----------HHhhcCEEEEEeC
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVP-----------TITDSDMFMVLSY  430 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~-----------~~~~~d~i~vl~~  430 (467)
                      +++++++||.-- +|+.....+.... +  .+..+++..++.+           .+..||.|.-|+.
T Consensus        76 ~~dvviIDE~Q~-~~~~~~~~l~~l~-~--~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~  138 (184)
T 2orw_A           76 DTRGVFIDEVQF-FNPSLFEVVKDLL-D--RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA  138 (184)
T ss_dssp             TEEEEEECCGGG-SCTTHHHHHHHHH-H--TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred             CCCEEEEECccc-CCHHHHHHHHHHH-H--CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence            578999999854 6554333332222 2  3788888888443           3445999987754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=92.44  E-value=0.015  Score=52.30  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      =+++++|++|+|||||++.+.+
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            4789999999999999988764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=93.15  E-value=0.033  Score=57.46  Aligned_cols=26  Identities=35%  Similarity=0.649  Sum_probs=22.6

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +.|=+++|+|++|+|||||++.++|-
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34557999999999999999999874

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.05  E-value=0.076  Score=54.23  Aligned_cols=36  Identities=33%  Similarity=0.450  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC----C--------CCccEEEEcCEe
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV----E--------PENGRILIDGLD  285 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~----~--------p~~G~i~i~g~~  285 (467)
                      +++|||++++|||||++.+.|--    .        ...|.+.++|..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~   50 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT   50 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence            68999999999999999999753    2        224566677763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.03  E-value=0.037  Score=54.93  Aligned_cols=26  Identities=42%  Similarity=0.537  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .-+++|+|+.|+|||||++.|++.+.
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999987653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=92.94  E-value=0.033  Score=50.94  Aligned_cols=28  Identities=11%  Similarity=0.213  Sum_probs=24.5

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++...+.+.||.|+||||+...|+..+
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            5666679999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	467
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-73
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	2e-68
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-63
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	4e-62
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-60
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	3e-57
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	6e-33
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-31
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-30
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-30
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	4e-28
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-27
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-27
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	4e-26
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	5e-25
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-24
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-24
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	6e-24
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	6e-24
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-18
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-15
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-13
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.001
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.002
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	0.003

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  230 bits (588), Expect = 1e-73
 Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 1/238 (0%)

Query: 218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG 277
            GRI+++ +  +Y  N   +LK I  + ++G  V  VG +G GK+TLI+ + R  +  +G
Sbjct: 14  QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73

Query: 278 RILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL-DPLGMYSDNEIWEAMEKCQL 336
           +ILIDG +I       LR ++ ++ Q+  LF  +V+ N+       +D E+ EA +    
Sbjct: 74  QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANA 133

Query: 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
              I  LP   D+ V + G   S GQ+Q   + R+ L    IL+LDEAT+++D  +++I+
Sbjct: 134 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 193

Query: 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVA 454
           Q  +       T + VAHR+ TIT +D  +V+  G +VE     +L+    A+  L +
Sbjct: 194 QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 251

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  217 bits (553), Expect = 2e-68
 Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 2/237 (0%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           G +E  ++   Y       L+ I      G  V +VGR+GSGK+T+ S + R  + + G 
Sbjct: 12  GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTN--LDPLGMYSDNEIWEAMEKCQL 336
           IL+DG D+    L  LR +++++ Q   LF  +V  N        YS  +I EA      
Sbjct: 72  ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131

Query: 337 KATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAIL 396
              I+++   LD+ + + G   S GQRQ   + R LL+ + IL+LDEAT+++D+ ++  +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191

Query: 397 QRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV 453
           Q  + E     T + +AHR+ TI  +D  +V+  G +VE    S+L+  +  +++L 
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  203 bits (519), Expect = 1e-63
 Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 2/235 (0%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           I   +++ RY+P++P++L  I  + K+G  +G+VGR+GSGK+TL   + R   PENG++L
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL-DPLGMYSDNEIWEAMEKCQLKAT 339
           IDG D+       LR ++ ++ Q+  L   S+  N+       S  ++  A +       
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
           IS L    ++ V ++G   S GQRQ   + R L+   +IL+ DEAT+++D  ++ ++ R 
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181

Query: 400 IREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLV 453
           + +   G TVI +AHR+ T+ ++D  +V+  G++VE     +L+    S +S L 
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  200 bits (510), Expect = 4e-62
 Identities = 68/245 (27%), Positives = 125/245 (51%), Gaps = 7/245 (2%)

Query: 215 WPSHGRIELEDLKVRY--RPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLV 272
               G ++ +D+   Y  RP+   VL+G+T T + G    +VG  GSGK+T+ + L  L 
Sbjct: 6   LHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64

Query: 273 EPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNL--DPLGMYSDNEIWEA 330
           +P  G++L+DG  +     + L  +++ + QEP +F  S++ N+        +  EI  A
Sbjct: 65  QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124

Query: 331 MEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDS 390
             K    + IS LP   D+ V + G   S GQRQ   L R L+++  +L+LD+AT+++D+
Sbjct: 125 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184

Query: 391 ATDAILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSA 448
            +   +++++ E  E    +V+ +   +  +  +D  + L  G + E     +LME    
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGC 244

Query: 449 FSKLV 453
           +  +V
Sbjct: 245 YWAMV 249

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  195 bits (498), Expect = 2e-60
 Identities = 67/237 (28%), Positives = 132/237 (55%), Gaps = 3/237 (1%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +    +   Y  ++  +L+ I+   +  + +   G +G GK+T+ S L R  +P  G I 
Sbjct: 2   LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLD--PLGMYSDNEIWEAMEKCQLKA 338
           IDG  I ++ L++ R+++  + Q+  +  G++R NL     G Y+D ++W+ ++    ++
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQR 398
            +  +P  L++ V + G   S GQRQ   + R  L+  +IL+LDEATAS+DS +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180

Query: 399 IIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE 455
            +     G T + +AHR+ TI D+D    +  G++      ++L+ T+  ++K V+E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  188 bits (479), Expect = 3e-57
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 26/276 (9%)

Query: 187 VSVERI-----RQFMHLPPEPPAIIEETKPPASWPSHGRIELEDLKVRYRPNTPLVLKGI 241
           + +E +       F  L  +     +             +    L +   P    VLK I
Sbjct: 3   IIMENVTAFWEEGFGELLEKVQ---QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNI 55

Query: 242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSII 301
               ++G  + + G TGSGKT+L+  +   +E   G I   G             ++S  
Sbjct: 56  NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFC 102

Query: 302 PQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVG 361
            Q   +  G+++ N+     Y +      ++ CQL+  I++     ++ + + G   S G
Sbjct: 103 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGG 162

Query: 362 QRQLFCLGRVLLKRNRILVLDEATASIDSAT-DAILQRIIREEFPGSTVITVAHRVPTIT 420
           QR    L R + K   + +LD     +D  T + + +  + +     T I V  ++  + 
Sbjct: 163 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR 222

Query: 421 DSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
            +D  ++L  G    Y   S+L      FS  +  Y
Sbjct: 223 KADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 258

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  122 bits (308), Expect = 6e-33
 Identities = 49/224 (21%), Positives = 102/224 (45%), Gaps = 9/224 (4%)

Query: 221 IELEDLKVRYRPNTPL--VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           I+L+++   Y+    +   LK +    KEG  V ++G +GSGK+T+++ +  L +P  G 
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 279 ILIDGLDICSMGLKDL----RTKLSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEK 333
           + ID +    +   +L    R K+  + Q+  L    +   N++   ++         E+
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393
            +      ++  L +   + +    S GQ+Q   + R L     I++ D+ T ++DS T 
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181

Query: 394 AILQRIIRE--EFPGSTVITVAHRVPTITDSDMFMVLSYGELVE 435
             + +++++  E  G TV+ V H +      +  + L  GE+  
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (296), Expect = 3e-31
 Identities = 59/240 (24%), Positives = 109/240 (45%), Gaps = 27/240 (11%)

Query: 221 IELEDLKVRYRPNTPLV--LKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           I+L ++   +   T  +  L  ++     G   GV+G +G+GK+TLI  +  L  P  G 
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 279 ILIDGLDICSMGLKD---LRTKLSIIPQEPTLF-RGSVRTNL-DPLGMY--SDNEIW--- 328
           +L+DG ++ ++   +    R ++ +I Q   L    +V  N+  PL +     +E+    
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121

Query: 329 -EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATAS 387
            E +    L       P  L           S GQ+Q   + R L    ++L+ DEAT++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 388 IDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           +D AT   +  ++++     G T++ + H +  +    D   V+S GEL+E D  S++  
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  116 bits (291), Expect = 2e-30
 Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           ++LE+L  R+   T   +  +  T K+G  + ++G +G GKTT +  +  L EP  GRI 
Sbjct: 7   VKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
               D+    L      +S++ Q   ++   +V  N+            E  ++ +  A 
Sbjct: 65  FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
           + ++  LL+   +      S GQRQ   + R ++    +L++DE  +++D+     ++  
Sbjct: 123 LLQIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178

Query: 400 IRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           I++  +    T I V H         D   V++ G+L++   P+++  
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  115 bits (289), Expect = 5e-30
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 22/242 (9%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
           ++ + DL  RY  +   VLKG++   + G  + ++G +GSGK+T +  +  L +P  G I
Sbjct: 2   KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59

Query: 280 LIDGLDICSMGLKD-------------LRTKLSIIPQEPTLF-RGSVRTN-LDPLGMYSD 324
           +++G +I  +  KD             LRT+L+++ Q   L+   +V  N ++       
Sbjct: 60  IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119

Query: 325 NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA 384
               +A E+         +               S GQ+Q   + R L     +L+ DE 
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH---LSGGQQQRVSIARALAMEPDVLLFDEP 176

Query: 385 TASIDSAT-DAILQRIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKL 442
           T+++D      +L+ + +    G T++ V H +      S   + L  G++ E   P ++
Sbjct: 177 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236

Query: 443 ME 444
             
Sbjct: 237 FG 238

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  108 bits (271), Expect = 4e-28
 Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 28/203 (13%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
           ++E+ DL V Y  + P VL+ IT T ++G  V   G  G GKTTL+  +   ++P  G I
Sbjct: 2   KLEIRDLSVGY--DKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58

Query: 280 LIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMY-----SDNEIWEAMEK 333
           + +G+ I       ++ K+  +P+E  + R  SV   L  +        + NEI +A+E 
Sbjct: 59  IYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113

Query: 334 CQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATD 393
            ++     +L  L            S G  +   L   LL    I VLD+   +ID  + 
Sbjct: 114 VEVLDLKKKLGEL------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161

Query: 394 AILQRIIREEFP--GSTVITVAH 414
             + + I E     G  +I+   
Sbjct: 162 HKVLKSILEILKEKGIVIISSRE 184

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (269), Expect = 1e-27
 Identities = 42/235 (17%), Positives = 93/235 (39%), Gaps = 28/235 (11%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           ++L+D+    R      L  ++   + G  + +VG  G+GK+TL++ +  +     G I 
Sbjct: 4   MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMY--SDNEIWEAMEKCQLKA 338
             G  + +     L    + + Q+ T    +   +   L  +  +  E+   +       
Sbjct: 57  FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---- 112

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK-------RNRILVLDEATASIDSA 391
                 + LD  +       S G+ Q   L  V+L+         ++L+LDE   S+D A
Sbjct: 113 ------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166

Query: 392 TDAILQRIIRE-EFPGSTVITVAHRVP-TITDSDMFMVLSYGELVEYDLPSKLME 444
             + L +I+      G  ++  +H +  T+  +    +L  G+++      +++ 
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (267), Expect = 3e-27
 Identities = 53/229 (23%), Positives = 105/229 (45%), Gaps = 10/229 (4%)

Query: 219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR 278
           G + ++DL+ R       +LKGI+   +EG   G++G  G+GKTT +  +  L++P +G 
Sbjct: 1   GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58

Query: 279 ILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLK 337
           + + G         ++R  +S +P+E   +R       L  +  +  +   E  E  +  
Sbjct: 59  VTVFG-KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117

Query: 338 ATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQ 397
             I+ L   +   VS     +S G  +   + R L+   R+ +LDE T+ +D      ++
Sbjct: 118 TEIAGLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173

Query: 398 RIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           +I+++    G T++  +H +  +    D   ++  G +VE     +L E
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  104 bits (261), Expect = 4e-26
 Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 23/253 (9%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +  E++   +       L G++ +  +G    ++G  GSGK+TLI+ +   ++ + GR+ 
Sbjct: 5   LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62

Query: 281 IDGLDICSMGLKDL-RTKLSIIPQEPTLF-RGSVRTNL-------------DPLGMYSDN 325
            +  DI +    +L    +    Q P      +V  NL                      
Sbjct: 63  FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122

Query: 326 EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEAT 385
           +  E +EK        +L  L D    +     S GQ +L  +GR L+   +++V+DE  
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPI 178

Query: 386 ASIDSATDAILQRIIRE-EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLM 443
           A +       +   + E +  G T + + HR+  + +  D   V+  G+++      + +
Sbjct: 179 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238

Query: 444 ETNSAFSKLVAEY 456
           +   +  K+V  Y
Sbjct: 239 KNVLSDPKVVEIY 251

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  101 bits (252), Expect = 5e-25
 Identities = 47/232 (20%), Positives = 98/232 (42%), Gaps = 14/232 (6%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           + L D+   +   T   ++ ++   K+G  + ++G +G GKTT +  +  L EP  G+I 
Sbjct: 4   VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61

Query: 281 IDGLDICSMGLKDLR----TKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQ 335
           I    +               ++++ Q   L+   +V  N+            E  ++ +
Sbjct: 62  IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121

Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
             A +  L  LL+          S GQRQ   LGR ++++ ++ ++DE  +++D+     
Sbjct: 122 EVAELLGLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177

Query: 396 LQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           ++  +++     G T I V H         D   V++ G L +   P ++ +
Sbjct: 178 MRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 99.4 bits (247), Expect = 1e-24
 Identities = 47/232 (20%), Positives = 100/232 (43%), Gaps = 24/232 (10%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           IE+E L  +++      L  ++   + G    ++G TG+GKT  +  +     P++GRIL
Sbjct: 2   IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLF-----RGSVRTNLDPLGMYSDNEIWEAMEKCQ 335
           +DG       L   +  ++ + Q  +LF     + ++   +    +     + +     +
Sbjct: 59  LDG--KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116

Query: 336 LKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAI 395
           ++  + R P+             S G++Q   L R L+   +IL+LDE  +++D  T   
Sbjct: 117 IEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165

Query: 396 LQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
            + ++    +    TV+ + H        +D   V+  G+L++   P ++ E
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 99.3 bits (247), Expect = 2e-24
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           ++L+++   +      V K I     EG  V  VG +G GK+TL+  +  L    +G + 
Sbjct: 1   VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58

Query: 281 IDGLDICSMGLKDLRTKLSIIPQEPTLFRG-SVRTNLDPLGMYSDNEIWEAMEKCQLKAT 339
           I    +           + ++ Q   L+   SV  N+      +  +     ++    A 
Sbjct: 59  IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116

Query: 340 ISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRI 399
           + +L  LLD          S GQRQ   +GR L+    + +LDE  +++D+A    ++  
Sbjct: 117 VLQLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172

Query: 400 IRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
           I    +  G T+I V H        +D  +VL  G + +   P +L  
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 97.7 bits (243), Expect = 6e-24
 Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL 280
           +E++ L V Y       +KGI      G  V ++G  G+GKTT +SA+  LV  + G+I+
Sbjct: 7   LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64

Query: 281 IDGLDICSMGLKDLRTK-LSIIPQEPTLF-RGSVRTNLDPLGMYSDNEIWEAMEKCQLKA 338
            +G DI +     +    ++++P+   +F   +V  NL        ++     +   + +
Sbjct: 65  FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124

Query: 339 TISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASID-SATDAILQ 397
              RL   L           S G++Q+  +GR L+ R ++L++DE +  +       + +
Sbjct: 125 LFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180

Query: 398 RIIREEFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
            I +    G+T++ V          +    VL  G++V     S+L++
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 97.8 bits (243), Expect = 6e-24
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 13/233 (5%)

Query: 220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI 279
           RI ++++   ++    + L  +    + G R G++G +G+GKTT +  +  L  P  G +
Sbjct: 3   RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 280 LIDGLDICSMGLKDLRT---KLSIIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQL 336
             D   + S G   +     K+ ++ Q   L+      NL      +       M K ++
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEI 117

Query: 337 KATISRL--PMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDA 394
           +  +  +   + +   ++      S  Q+Q   L R L+K   +L+LDE  +++D+    
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177

Query: 395 ILQRIIRE--EFPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME 444
             + +++E     G T++ V+H    I   +D   VL  G+LV+   P  L +
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 81.6 bits (201), Expect = 3e-18
 Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 13/214 (6%)

Query: 246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP 305
                  ++G TG+GK+  +  +  +V+P+ G + ++G DI    L   R  +  +PQ+ 
Sbjct: 22  MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDY 79

Query: 306 TLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQL 365
            LF           G+  + E  E   + +  A    +  LLD   +      S G+RQ 
Sbjct: 80  ALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRKPAR----LSGGERQR 134

Query: 366 FCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRE--EFPGSTVITVAHRVPTITD-S 422
             L R L+ + R+L+LDE  +++D  T  +L   +R         ++ V H +      +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194

Query: 423 DMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY 456
           D   V+  G +VE     +L    +     VAE+
Sbjct: 195 DEVAVMLNGRIVEKGKLKELFSAKNGE---VAEF 225

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 72.7 bits (177), Expect = 1e-15
 Identities = 16/186 (8%), Positives = 41/186 (22%), Gaps = 28/186 (15%)

Query: 250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFR 309
           ++ + G  G GKTTL+  +   +         + +       +     ++   ++     
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61

Query: 310 GSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLG 369
               +         + + +E                                        
Sbjct: 62  KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93

Query: 370 RVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLS 429
                R +++++DE       +             P   V+                 L 
Sbjct: 94  EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153

Query: 430 YGELVE 435
              L+E
Sbjct: 154 GAVLIE 159

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 1e-13
 Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 7/171 (4%)

Query: 251 VGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRG 310
           V + G  G GKTTLI     +++     +     +    G + +   +  +         
Sbjct: 4   VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63

Query: 311 SVRTNLDPL------GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQ 364
                              D   +E +    L+             V DE     +  + 
Sbjct: 64  VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123

Query: 365 LFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHR 415
                R  L     ++L            A+++ I   +      +T  +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPL-ALVEEIRNRKDVKVFNVTKENR 173

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 246 KEGTRVGVVGRTGSGKTTLISALFR 270
            +  +V +VGR   GK+TL +A+  
Sbjct: 6   TDAIKVAIVGRPNVGKSTLFNAILN 30

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSM 289
           RVG+ G  G GK+T I AL  L+     ++ +  +D  S 
Sbjct: 53  RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	467
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.85
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.78
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	99.76
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	99.74
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.46
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.36
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.24
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.13
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.75
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.71
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.7
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.42
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.39
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.35
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.32
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.28
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.13
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.13
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.12
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.08
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.07
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.06
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.06
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.04
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.04
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.01
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.96
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.92
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.86
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.86
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.85
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.85
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.83
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.83
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.83
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.8
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.77
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.75
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.7
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.6
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.59
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.58
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.56
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.55
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.53
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.52
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.46
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.44
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.43
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.39
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.38
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.37
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.36
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.36
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.35
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.29
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.28
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.26
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.25
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.25
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.23
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.22
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.22
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.2
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.16
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.14
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.13
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.11
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.05
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.04
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.02
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.01
d1okkd2	207	GTPase domain of the signal recognition particle r	96.0
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.95
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.95
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.93
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.91
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.91
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.91
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.89
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.85
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.8
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.78
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.77
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.77
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.76
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.72
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.72
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.71
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.7
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.67
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.62
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.62
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.54
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.5
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.49
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.49
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.48
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.48
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.47
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.47
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.44
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.44
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.41
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.39
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.35
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.32
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.31
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.26
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.25
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.2
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.16
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.14
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.06
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.05
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.03
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.03
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.0
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.98
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.96
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.96
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.93
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.92
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.89
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.88
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.87
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.86
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.86
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.83
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.82
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.82
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.82
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.81
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.8
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.79
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.78
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.77
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.72
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.72
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.71
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.67
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.67
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.66
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.58
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.57
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.53
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.52
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.49
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.48
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.42
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.42
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.41
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.4
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.39
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.39
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.39
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.34
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.31
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.3
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.25
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.24
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.21
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.21
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.12
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.06
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.93
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.84
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.76
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.75
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.67
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.61
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.57
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.44
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.41
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.36
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.25
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.24
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.19
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.15
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.12
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.11
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.11
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.11
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.06
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.02
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.97
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.68
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.64
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.57
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.52
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	92.23
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.06
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	91.99
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.93
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.93
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.53
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.32
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.14
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	90.87
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	90.49
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.32
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.29
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.0
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.86
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.51
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.34
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.25
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.88
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	88.79
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.26
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.08
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.04
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.98
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.78
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	87.56
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	87.22
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.96
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.41
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	84.75
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.72
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	84.49
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	83.75
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	83.57
d1tuea_	205	Replication protein E1 helicase domain {Human papi	83.51
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	82.94
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	82.15
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	82.15
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	81.99
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	80.88
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.83

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-71  Score=526.35  Aligned_cols=238  Identities=31%  Similarity=0.525  Sum_probs=227.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      +|+|+||||+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+..++.+++|++|+
T Consensus         1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1           1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence            38999999999877778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          300 IIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      ||||+|++|++||+|||.+.. ..++++++++++.+++.+++..+|.|++|.++++|.+|||||||||+|||||+++|+|
T Consensus        81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i  160 (241)
T d2pmka1          81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI  160 (241)
T ss_dssp             EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence            999999999999999998754 5788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhcc-CchHHHHHHHHH
Q 044927          379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMET-NSAFSKLVAEYR  457 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~~l~~~~~  457 (467)
                      ||||||||+||+.+++.+++.|++..+++|+|+||||++.++.||||+||++|+|+++|+|+||+++ ++.|++|++.+.
T Consensus       161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~  240 (241)
T d2pmka1         161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS  240 (241)
T ss_dssp             EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred             hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhc
Confidence            9999999999999999999999998889999999999999999999999999999999999999975 678999987653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.7e-71  Score=529.70  Aligned_cols=239  Identities=31%  Similarity=0.511  Sum_probs=229.5

Q ss_pred             CcccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 044927          217 SHGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT  296 (467)
Q Consensus       217 ~~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~  296 (467)
                      ..|.|+++||+|+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|+
T Consensus        13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~   92 (255)
T d2hyda1          13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN   92 (255)
T ss_dssp             CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             CCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence            35689999999999877677999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEcCCCccccccHHHhcCcCC-CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          297 KLSIIPQEPTLFRGSVRTNLDPLG-MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      +|+||||+|++|++||+|||.++. ..++++++++++.+++.+++..+|+|++|.++++|.+|||||||||+|||||+++
T Consensus        93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~  172 (255)
T d2hyda1          93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN  172 (255)
T ss_dssp             TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred             eeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence            999999999999999999998653 5688999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE  455 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~  455 (467)
                      |+|||||||||+||++++..+++.|+++.+++|+|+||||++.++.||||++|++|+|++.|+|+||+++++.|+++++.
T Consensus       173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~~  252 (255)
T d2hyda1         173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI  252 (255)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999998764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2e-70  Score=525.26  Aligned_cols=239  Identities=30%  Similarity=0.479  Sum_probs=229.2

Q ss_pred             cccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 044927          218 HGRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTK  297 (467)
Q Consensus       218 ~~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~  297 (467)
                      .|.|+|+||||+|+++..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|++||+++++++.+++|++
T Consensus        11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   90 (253)
T d3b60a1          11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ   90 (253)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred             ceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence            46799999999998766679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEcCCCccccccHHHhcCcCC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          298 LSIIPQEPTLFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       298 i~~v~Q~~~lf~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |+||||+|.+|++|+++|+.+..  ..++++++++++.+++.+++..+|+|++|.++++|.+|||||||||+|||||+++
T Consensus        91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~  170 (253)
T d3b60a1          91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD  170 (253)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence            99999999999999999987543  4688999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHH
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAE  455 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~  455 (467)
                      |+|||||||||+||+.++..+++.|+++.+++|+|+||||++.++.||||+||++|+|++.|+|+||+++++.|++|++.
T Consensus       171 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~~  250 (253)
T d3b60a1         171 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM  250 (253)
T ss_dssp             CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHH
T ss_pred             CCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999886


Q ss_pred             H
Q 044927          456 Y  456 (467)
Q Consensus       456 ~  456 (467)
                      +
T Consensus       251 Q  251 (253)
T d3b60a1         251 Q  251 (253)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.3e-70  Score=520.34  Aligned_cols=235  Identities=29%  Similarity=0.553  Sum_probs=224.2

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++||||+|+++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++.+++.+++|++|||
T Consensus         2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   80 (242)
T d1mv5a_           2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (242)
T ss_dssp             EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence            7999999999754 469999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCccccccHHHhcCcC--CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCE
Q 044927          301 IPQEPTLFRGSVRTNLDPL--GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRI  378 (467)
Q Consensus       301 v~Q~~~lf~~tv~enl~~~--~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~i  378 (467)
                      |||+|++|++|++||+.+.  ...++++++++++.+++.+++..+|++++|.++++|.+|||||||||+|||||+++|+|
T Consensus        81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i  160 (242)
T d1mv5a_          81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (242)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            9999999999999999754  34678889999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHHHHH
Q 044927          379 LVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLVAEY  456 (467)
Q Consensus       379 liLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~~~~  456 (467)
                      ||||||||+||+.++..+++.|++..+++|+|+||||++.+..||||+||++|+|++.|+|+||++.++.|+++++.+
T Consensus       161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q  238 (242)
T d1mv5a_         161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ  238 (242)
T ss_dssp             EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred             EEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHHHH
Confidence            999999999999999999999999888999999999999999999999999999999999999999999999988754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-69  Score=513.73  Aligned_cols=238  Identities=28%  Similarity=0.451  Sum_probs=223.6

Q ss_pred             CcccEEEEeEEEEeCCC-CCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 044927          217 SHGRIELEDLKVRYRPN-TPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR  295 (467)
Q Consensus       217 ~~~~i~~~~vs~~y~~~-~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r  295 (467)
                      ..+.|+|+||||+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|++||+|+.+++.+++|
T Consensus         8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r   87 (251)
T d1jj7a_           8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH   87 (251)
T ss_dssp             CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred             ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence            34679999999999753 34589999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEcCCCccccccHHHhcCcCC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          296 TKLSIIPQEPTLFRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      ++|+||||+|++|++||+||+.+..  ....+++.++++.+++.+++..+|+|+++.++++|.+|||||||||+|||||+
T Consensus        88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence            9999999999999999999997642  45677888899999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHH
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSK  451 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~  451 (467)
                      ++|+|||||||||+||+.++..+++.|++..+  ++|+|+||||++.++.||||+||++|+|+++|+|+||+++++.|++
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~  247 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA  247 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred             cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHH
Confidence            99999999999999999999999999988643  7999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q 044927          452 LVA  454 (467)
Q Consensus       452 l~~  454 (467)
                      |++
T Consensus       248 l~~  250 (251)
T d1jj7a_         248 MVQ  250 (251)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            874

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.5e-58  Score=433.28  Aligned_cols=209  Identities=24%  Similarity=0.433  Sum_probs=187.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++|||++|++   .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.+++..  |++|||
T Consensus         2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~   76 (229)
T d3d31a2           2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF   76 (229)
T ss_dssp             EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred             EEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhccee
Confidence            789999999963   389999999999999999999999999999999999999999999999999987765  678999


Q ss_pred             EcCCCccccc-cHHHhcCcC----CCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          301 IPQEPTLFRG-SVRTNLDPL----GMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      |||++.+|+. ||+||+.+.    +....+++.++++..++.++.++.|           .+||||||||++|||||+.+
T Consensus        77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~~  145 (229)
T d3d31a2          77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN  145 (229)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred             eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh-----------hhCCHHHhcchhhhhhhhcc
Confidence            9999999965 999999642    2335667888888887766555544           77999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |++|||||||++|||.+...+++.|+++.  .|.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++++
T Consensus       146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~  218 (229)
T d3d31a2         146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK  218 (229)
T ss_dssp             CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999853  48999999999998876 999999999999999999999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.7e-58  Score=434.15  Aligned_cols=212  Identities=23%  Similarity=0.345  Sum_probs=181.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||+++|++  ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.++++.  +++||
T Consensus         6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig   81 (239)
T d1v43a3           6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS   81 (239)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred             eEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEE
Confidence            4999999999964  4599999999999999999999999999999999999999999999999999988764  57899


Q ss_pred             EEcCCCcccc-ccHHHhcCcCC---CCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHH
Q 044927          300 IIPQEPTLFR-GSVRTNLDPLG---MYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRV  371 (467)
Q Consensus       300 ~v~Q~~~lf~-~tv~enl~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARa  371 (467)
                      ||||++.+|+ .||+||+.+..   ..+.+    ++.++++.+++.++.++.           ..+||||||||++||||
T Consensus        82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGGq~QRvaiAra  150 (239)
T d1v43a3          82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY-----------PAQLSGGQRQRVAVARA  150 (239)
T ss_dssp             EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSC-----------TTTCCSSCHHHHHHHHH
T ss_pred             EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHhh
Confidence            9999999996 59999997543   23433    344566666666554444           47899999999999999


Q ss_pred             hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927          372 LLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       372 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      |+.+|++|||||||++|||.+...+++.|+++. + |+|+|+|||+++.+.. ||||++|++|+|+++|+|+|++++.
T Consensus       151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P  228 (239)
T d1v43a3         151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP  228 (239)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            999999999999999999999999999999863 3 8999999999999875 9999999999999999999998754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-58  Score=432.56  Aligned_cols=211  Identities=25%  Similarity=0.327  Sum_probs=160.2

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      |+++||+++|++  ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+..  |++|||
T Consensus         1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~   76 (232)
T d2awna2           1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM   76 (232)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred             CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeee
Confidence            689999999964  4599999999999999999999999999999999999999999999999999887754  578999


Q ss_pred             EcCCCccccc-cHHHhcCcCCC---CC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHh
Q 044927          301 IPQEPTLFRG-SVRTNLDPLGM---YS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVL  372 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal  372 (467)
                      |||++.+|+. ||+||+.+...   .+    ++++.++++.+++.++.++.|           .+||||||||++|||||
T Consensus        77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL  145 (232)
T d2awna2          77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL  145 (232)
T ss_dssp             ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred             eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence            9999999965 99999975422   11    245777888888888777766           78999999999999999


Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhccC
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRIIREE--FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMETN  446 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~  446 (467)
                      +.+|++|||||||++|||.+...+++.|++.  ..|+|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++..
T Consensus       146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P  222 (232)
T d2awna2         146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP  222 (232)
T ss_dssp             HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence            9999999999999999999999999999885  348999999999998876 9999999999999999999998753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-59  Score=451.07  Aligned_cols=217  Identities=23%  Similarity=0.339  Sum_probs=197.5

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|.|+|+++.    .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|             +++
T Consensus        38 ~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~  100 (281)
T d1r0wa_          38 NVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS  100 (281)
T ss_dssp             --CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred             cEEEEEcCCC----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEE
Confidence            4666666542    24699999999999999999999999999999999999999999999998             499


Q ss_pred             EEcCCCccccccHHHhcCcCCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEE
Q 044927          300 IIPQEPTLFRGSVRTNLDPLGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRIL  379 (467)
Q Consensus       300 ~v~Q~~~lf~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~il  379 (467)
                      |+||++++|++||+||+.+.....+.+++.+++.+++..++..+|+++++.++++|.+|||||||||+|||||+++|+||
T Consensus       101 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il  180 (281)
T d1r0wa_         101 FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY  180 (281)
T ss_dssp             EECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred             EEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccch
Confidence            99999999999999999876667788889999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCCCHHHHHHHHHHH-HHHCCCceEEEEccChhHHhhcCEEEEEeCCEEEEecChhhHhccCchHHHHH
Q 044927          380 VLDEATASIDSATDAILQRII-REEFPGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLPSKLMETNSAFSKLV  453 (467)
Q Consensus       380 iLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~~~~l~  453 (467)
                      |||||||+||+.++..+++.+ ....+++|+|+||||++.++.||||++|++|+|++.|+|+||++..+.|.+.+
T Consensus       181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~  255 (281)
T d1r0wa_         181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL  255 (281)
T ss_dssp             EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred             hhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHHH
Confidence            999999999999999888764 44556899999999999999999999999999999999999998777776544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.6e-58  Score=436.10  Aligned_cols=216  Identities=24%  Similarity=0.382  Sum_probs=189.4

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMG---LKDLRT  296 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~r~  296 (467)
                      .|+++||+++|+++...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+   ....|+
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence            48999999999755556899999999999999999999999999999999999999999999999997655   334577


Q ss_pred             ccEEEcCCCccccc-cHHHhcCcCC---CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHH
Q 044927          297 KLSIIPQEPTLFRG-SVRTNLDPLG---MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCL  368 (467)
Q Consensus       297 ~i~~v~Q~~~lf~~-tv~enl~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~i  368 (467)
                      +||||||++.+|+. ||+||+.+..   ..+.    +++.++++.+++.++.++.|           .+||||||||++|
T Consensus        83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRvai  151 (242)
T d1oxxk2          83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVAL  151 (242)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred             cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-----------hhCCHHHHhHHHH
Confidence            89999999999975 9999996431   2333    34667777777766655555           6799999999999


Q ss_pred             HHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          369 GRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       369 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      ||||+.+|++|||||||++||+.+...+++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++.
T Consensus       152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~  231 (242)
T d1oxxk2         152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (242)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            999999999999999999999999999999998863 3 8999999999998865 999999999999999999999875


Q ss_pred             C
Q 044927          446 N  446 (467)
Q Consensus       446 ~  446 (467)
                      +
T Consensus       232 P  232 (242)
T d1oxxk2         232 P  232 (242)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-57  Score=430.10  Aligned_cols=214  Identities=26%  Similarity=0.434  Sum_probs=188.4

Q ss_pred             EEEEeEEEEeCCCCC--ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 044927          221 IELEDLKVRYRPNTP--LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD---LR  295 (467)
Q Consensus       221 i~~~~vs~~y~~~~~--~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r  295 (467)
                      |+++||+++|+.+..  .||+||||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++..++.++   +|
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence            789999999975432  4799999999999999999999999999999999999999999999999999888654   56


Q ss_pred             cccEEEcCCCccccc-cHHHhcCcC---CCCC----HHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          296 TKLSIIPQEPTLFRG-SVRTNLDPL---GMYS----DNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ++||||||++.+|+. ||+||+.+.   ...+    .+++.++++.+++.+..++.|           .+||||||||++
T Consensus        82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva  150 (240)
T d3dhwc1          82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA  150 (240)
T ss_dssp             HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred             ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence            789999999999875 999999631   1122    245667788887766555444           789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|++|||||||++||+.+...+++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++
T Consensus       151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  230 (240)
T ss_dssp             HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred             HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999999999863 3 8999999999999876 99999999999999999999986


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      .
T Consensus       231 ~  231 (240)
T d3dhwc1         231 H  231 (240)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=6.9e-58  Score=432.08  Aligned_cols=213  Identities=22%  Similarity=0.328  Sum_probs=187.2

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH----Hh
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKD----LR  295 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~----~r  295 (467)
                      .|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...    .|
T Consensus         3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~   80 (240)
T d1g2912           3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD   80 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred             cEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence            4899999999963  45999999999999999999999999999999999999999999999999997765443    36


Q ss_pred             cccEEEcCCCccccc-cHHHhcCcC---CCCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHH
Q 044927          296 TKLSIIPQEPTLFRG-SVRTNLDPL---GMYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFC  367 (467)
Q Consensus       296 ~~i~~v~Q~~~lf~~-tv~enl~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~  367 (467)
                      ++||||||+|.+|+. ||+||+.+.   ...+.    +++.++++.+++.++.++.|           .+||||||||++
T Consensus        81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv~  149 (240)
T d1g2912          81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRVA  149 (240)
T ss_dssp             SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHHH
T ss_pred             ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHH
Confidence            789999999999976 999999642   12333    34666777777766555544           789999999999


Q ss_pred             HHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-C-CceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          368 LGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-P-GSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       368 iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      |||||+.+|++|||||||++||+.+...+++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++.
T Consensus       150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999999999999999999999998863 3 8999999999999876 99999999999999999999987


Q ss_pred             c
Q 044927          445 T  445 (467)
Q Consensus       445 ~  445 (467)
                      +
T Consensus       230 ~  230 (240)
T d1g2912         230 K  230 (240)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.4e-57  Score=425.10  Aligned_cols=209  Identities=24%  Similarity=0.396  Sum_probs=176.9

Q ss_pred             EEEEeEEEEeCCCCC--ceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----
Q 044927          221 IELEDLKVRYRPNTP--LVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDL----  294 (467)
Q Consensus       221 i~~~~vs~~y~~~~~--~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~----  294 (467)
                      |+++||+++|+.+..  .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..++.+++    
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence            789999999965432  37999999999999999999999999999999999999999999999999999987764    


Q ss_pred             hcccEEEcCCCccccc-cHHHhcCc---C---CCCCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHH
Q 044927          295 RTKLSIIPQEPTLFRG-SVRTNLDP---L---GMYSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQR  363 (467)
Q Consensus       295 r~~i~~v~Q~~~lf~~-tv~enl~~---~---~~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~  363 (467)
                      |++||||||+|.+|+. ||+||+.+   .   ...+.+    ++.+.++.+++.+.          .......+||||||
T Consensus        82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~p~~LSGGqk  151 (230)
T d1l2ta_          82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ  151 (230)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred             cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh----------hhcCChhhCCHHHH
Confidence            4579999999998865 99999853   1   123333    23344444444321          11223368999999


Q ss_pred             HHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhhcCEEEEEeCCEEEEecCh
Q 044927          364 QLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITDSDMFMVLSYGELVEYDLP  439 (467)
Q Consensus       364 Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~~  439 (467)
                      ||++|||||+.+|++||||||||+||+.++..+++.|+++.  .|+|+|+|||+++.++.||||++|++|+|+++|++
T Consensus       152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence            99999999999999999999999999999999999999863  48999999999998888999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.3e-55  Score=420.93  Aligned_cols=213  Identities=25%  Similarity=0.406  Sum_probs=185.6

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH--------
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGL--------  291 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~--------  291 (467)
                      .|+++||+++|++  ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.        
T Consensus         2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   79 (258)
T d1b0ua_           2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   79 (258)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence            4899999999964  359999999999999999999999999999999999999999999999999865432        


Q ss_pred             -----HHHhcccEEEcCCCccccc-cHHHhcCcC----CCCCH----HHHHHHHHHcChHHHH-HhCCCcccccccCCCC
Q 044927          292 -----KDLRTKLSIIPQEPTLFRG-SVRTNLDPL----GMYSD----NEIWEAMEKCQLKATI-SRLPMLLDSSVSDEGE  356 (467)
Q Consensus       292 -----~~~r~~i~~v~Q~~~lf~~-tv~enl~~~----~~~~~----~~~~~~~~~~~l~~~i-~~l~~g~~t~v~~~g~  356 (467)
                           ..+|++||||||+|.+|+. ||.||+.+.    ...+.    +.+.++++.+++.+.. ++.|           .
T Consensus        80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----------~  148 (258)
T d1b0ua_          80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V  148 (258)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred             cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-----------c
Confidence                 3467889999999999865 999998532    22332    3456677888876543 3444           6


Q ss_pred             CCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhh-cCEEEEEeCCEEE
Q 044927          357 NWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITD-SDMFMVLSYGELV  434 (467)
Q Consensus       357 ~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv  434 (467)
                      +||||||||++|||||+.+|++|||||||+|||+.+...+++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|+
T Consensus       149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv  228 (258)
T d1b0ua_         149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE  228 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            799999999999999999999999999999999999999999998854 58999999999999876 9999999999999


Q ss_pred             EecChhhHhcc
Q 044927          435 EYDLPSKLMET  445 (467)
Q Consensus       435 ~~g~~~~l~~~  445 (467)
                      ++|+|+|+++.
T Consensus       229 ~~g~~~ev~~~  239 (258)
T d1b0ua_         229 EEGDPEQVFGN  239 (258)
T ss_dssp             EEECHHHHHHS
T ss_pred             EEcCHHHHHhC
Confidence            99999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=5.9e-55  Score=414.39  Aligned_cols=218  Identities=25%  Similarity=0.390  Sum_probs=181.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-ccc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLR-TKL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r-~~i  298 (467)
                      .|+++||+++|++  ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+.+..+ ..+
T Consensus         6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi   83 (240)
T d1ji0a_           6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             EEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence            5899999999964  4599999999999999999999999999999999999999999999999999998877654 459


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCC
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKR  375 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~  375 (467)
                      +|+||++.+|+. |++||+.+..  ....+...+.++..     ...+ .+++........+||||||||++|||||+.+
T Consensus        84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~  157 (240)
T d1ji0a_          84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMSR  157 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred             cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence            999999999975 9999985422  12222222222111     1111 1222233344578999999999999999999


Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                      |++|||||||+||||.+...+++.|+++ .+|+|+|++||+++.+.. ||||++|++|+|+++|+++|+.+.
T Consensus       158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             CCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence            9999999999999999999999999986 358999999999998765 999999999999999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.5e-55  Score=416.87  Aligned_cols=212  Identities=20%  Similarity=0.326  Sum_probs=180.3

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc-cc
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRT-KL  298 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~-~i  298 (467)
                      .|+++|||++|++  ..+|+||||++++||++||+||||||||||+++|+|+++|++|+|+++|+++...++.+.++ .|
T Consensus         4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi   81 (254)
T d1g6ha_           4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI   81 (254)
T ss_dssp             EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             eEEEEEEEEEECC--eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence            5899999999964  35999999999999999999999999999999999999999999999999999999887654 59


Q ss_pred             EEEcCCCccccc-cHHHhcCcCCC----------------CCHH----HHHHHHHHcChHHHHHhCCCcccccccCCCCC
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLGM----------------YSDN----EIWEAMEKCQLKATISRLPMLLDSSVSDEGEN  357 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~~----------------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~  357 (467)
                      +|+||+|.+|+. ||+||+.+...                ..++    +..++++..++           +........+
T Consensus        82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~  150 (254)
T d1g6ha_          82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-----------SHLYDRKAGE  150 (254)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC-----------GGGTTSBGGG
T ss_pred             CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCc-----------chhccCchhh
Confidence            999999998865 99999954210                0111    12223333333           3333344578


Q ss_pred             CChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEE
Q 044927          358 WSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVE  435 (467)
Q Consensus       358 LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~  435 (467)
                      ||||||||++|||||+.+|++|||||||+|||+.+...+++.|+++ .+|+|+|+|||+++.+.. ||||+||++|+|++
T Consensus       151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~  230 (254)
T d1g6ha_         151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA  230 (254)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred             CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE
Confidence            9999999999999999999999999999999999999999999886 458999999999998865 99999999999999


Q ss_pred             ecChhhHhc
Q 044927          436 YDLPSKLME  444 (467)
Q Consensus       436 ~g~~~~l~~  444 (467)
                      +|+++|+.+
T Consensus       231 ~g~~~e~~~  239 (254)
T d1g6ha_         231 EGRGEEEIK  239 (254)
T ss_dssp             EEESHHHHH
T ss_pred             EecHHHHhh
Confidence            999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.1e-54  Score=409.83  Aligned_cols=212  Identities=25%  Similarity=0.429  Sum_probs=183.4

Q ss_pred             ccEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhccc
Q 044927          219 GRIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKL  298 (467)
Q Consensus       219 ~~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i  298 (467)
                      |.|+++||+++|++  +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|+.+
T Consensus         1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i   77 (238)
T d1vpla_           1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI   77 (238)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred             CCEEEEeEEEEECC--EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhE
Confidence            46999999999964  459999999999999999999999999999999999999999999999999986 456789999


Q ss_pred             EEEcCCCccccc-cHHHhcCcCC---CCCHHHHH----HHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHH
Q 044927          299 SIIPQEPTLFRG-SVRTNLDPLG---MYSDNEIW----EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGR  370 (467)
Q Consensus       299 ~~v~Q~~~lf~~-tv~enl~~~~---~~~~~~~~----~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iAR  370 (467)
                      ||+||++.+|.. |++||+.+..   ..+..+++    ++++.+++.           ....+...+||||||||++|||
T Consensus        78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lSgG~~qrv~iA~  146 (238)
T d1vpla_          78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIAR  146 (238)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHHH
T ss_pred             eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-----------HHHhhhhhhCCHHHHHHHHHHH
Confidence            999999998865 9999995421   23344433    334444443           3334445789999999999999


Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhc
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLME  444 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~  444 (467)
                      ||+.+|++|||||||+||||.++..+++.+++. .+|+|+|++||+++.+.. ||||++|++|+|++.|+|+|+.+
T Consensus       147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  222 (238)
T d1vpla_         147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  222 (238)
T ss_dssp             HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999999999999885 358999999999999986 99999999999999999999975

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.9e-53  Score=400.30  Aligned_cols=213  Identities=23%  Similarity=0.351  Sum_probs=179.6

Q ss_pred             EEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEE
Q 044927          221 IELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       221 i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      +++ ++.++|++-   .+ |+||+++ ||+++|+||||||||||+++|+|+++|++|+|.++|+++.++++.  |++|||
T Consensus         3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~   74 (240)
T d2onka1           3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF   74 (240)
T ss_dssp             EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred             EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCcee
Confidence            566 578888532   24 7999995 689999999999999999999999999999999999999988764  688999


Q ss_pred             EcCCCccccc-cHHHhcCcCC-CCCH----HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC
Q 044927          301 IPQEPTLFRG-SVRTNLDPLG-MYSD----NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK  374 (467)
Q Consensus       301 v~Q~~~lf~~-tv~enl~~~~-~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~  374 (467)
                      |||++.+|+. ||+||+.+.. ..+.    +++.++++.+++.++.++.           ..+||||||||++|||||+.
T Consensus        75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~-----------~~~LSGG~kQRvaiAral~~  143 (240)
T d2onka1          75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARALVI  143 (240)
T ss_dssp             CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHHTT
T ss_pred             eccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCC-----------hhhCCHHHHHHHHHHHHHhc
Confidence            9999999975 9999997642 2333    3355566666665544444           47899999999999999999


Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc-CchHH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEF--PGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET-NSAFS  450 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~-~~~~~  450 (467)
                      +|++|||||||++|||.+...+++.|+++.  .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++. +...+
T Consensus       144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~  223 (240)
T d2onka1         144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA  223 (240)
T ss_dssp             CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred             cCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHH
Confidence            999999999999999999999999998863  38999999999998876 999999999999999999999874 33344


Q ss_pred             HH
Q 044927          451 KL  452 (467)
Q Consensus       451 ~l  452 (467)
                      ++
T Consensus       224 ~f  225 (240)
T d2onka1         224 EF  225 (240)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-49  Score=374.32  Aligned_cols=208  Identities=19%  Similarity=0.283  Sum_probs=178.8

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      -++++||+++|      +|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|+++..++...++...+
T Consensus         3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~   75 (231)
T d1l7vc_           3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA   75 (231)
T ss_dssp             EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred             EEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence            37899997544      699999999999999999999999999999999986 68999999999999999999999999


Q ss_pred             EEcCCCcc-ccccHHHhcCcCC--CCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcC--
Q 044927          300 IIPQEPTL-FRGSVRTNLDPLG--MYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLK--  374 (467)
Q Consensus       300 ~v~Q~~~l-f~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~--  374 (467)
                      |++|+... |..++.+++.+..  ....+.+.++++..++.+           .++....+||||||||++|||||++  
T Consensus        76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~~  144 (231)
T d1l7vc_          76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT  144 (231)
T ss_dssp             EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred             eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHh-----------HhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence            99998764 6678999885432  233455666666665543           3344457899999999999999997  


Q ss_pred             -----CCCEEEeeCCCCCCCHHHHHHHHHHHHHH-CCCceEEEEccChhHHhh-cCEEEEEeCCEEEEecChhhHhcc
Q 044927          375 -----RNRILVLDEATASIDSATDAILQRIIREE-FPGSTVITVAHRVPTITD-SDMFMVLSYGELVEYDLPSKLMET  445 (467)
Q Consensus       375 -----~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~  445 (467)
                           +|++|||||||+|||+.++..+.+.++++ .+|+|+|++||+++.+.. ||||++|++|+|+++|+++|+++.
T Consensus       145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence                 77999999999999999999999999985 468999999999998765 999999999999999999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.9e-46  Score=343.47  Aligned_cols=188  Identities=29%  Similarity=0.407  Sum_probs=155.7

Q ss_pred             cEEEEeEEEEeCCCCCceecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccE
Q 044927          220 RIELEDLKVRYRPNTPLVLKGITCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLS  299 (467)
Q Consensus       220 ~i~~~~vs~~y~~~~~~~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~  299 (467)
                      .|+++||||+|+   +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.     .++.+++
T Consensus         2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred             eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcEE
Confidence            489999999994   25999999999999999999999999999999999999999999999999875     4578899


Q ss_pred             EEcCCCccccc-cHHHhcCc-----CCCCCHHHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhc
Q 044927          300 IIPQEPTLFRG-SVRTNLDP-----LGMYSDNEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLL  373 (467)
Q Consensus       300 ~v~Q~~~lf~~-tv~enl~~-----~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~  373 (467)
                      |+||++.++.. |+.+|+.+     ....+++++.++++..++.+        ++.    +..+||||||||++|||||+
T Consensus        74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~----~~~~LSgG~~qrv~ia~al~  141 (200)
T d1sgwa_          74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKK----KLGELSQGTIRRVQLASTLL  141 (200)
T ss_dssp             EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTS----BGGGSCHHHHHHHHHHHHTT
T ss_pred             EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------ccc----ccCcCCCcHHHHHHHHHHHh
Confidence            99999988765 99999842     22456677777766654322        222    23579999999999999999


Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCC--CceEEEEccChhHHhhcCEEEEEeC
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIREEFP--GSTVITVAHRVPTITDSDMFMVLSY  430 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~~~d~i~vl~~  430 (467)
                      ++|+++||||||+|||+.++..+++.|.+..+  +.++|.++|++   ..||++.+|++
T Consensus       142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~  197 (200)
T d1sgwa_         142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK  197 (200)
T ss_dssp             SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred             cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh---hhcchhhheee
Confidence            99999999999999999999999999988643  44455555554   46999998854

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.78  E-value=7e-21  Score=170.12  Aligned_cols=158  Identities=10%  Similarity=0.009  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCC-CCHHHHH
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGM-YSDNEIW  328 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~-~~~~~~~  328 (467)
                      +++|+||||||||||++.|+|.++|+.|.+..++.+......+.........++...++..+...+...... ...+.  
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY--   79 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcch--
Confidence            589999999999999999999999999999999876543322111111112222222332222222211110 01110  


Q ss_pred             HHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH-C-CC
Q 044927          329 EAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREE-F-PG  406 (467)
Q Consensus       329 ~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~-~~  406 (467)
                                                 ..+|+|+++|.++++++.++|+++++|||....+  ....+.+.+.+. . .+
T Consensus        80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~  130 (178)
T d1ye8a1          80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPN  130 (178)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTT
T ss_pred             ---------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCC
Confidence                                       1368999999999999999999999999865432  222333444442 2 37


Q ss_pred             ceEEEEccChhHHhhcCEEEEEeCCEEEEecC
Q 044927          407 STVITVAHRVPTITDSDMFMVLSYGELVEYDL  438 (467)
Q Consensus       407 ~tvi~itH~l~~~~~~d~i~vl~~G~iv~~g~  438 (467)
                      +|+|+++|+.+....||++..+++|++++-+.
T Consensus       131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred             CEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence            89999999988777899999999999988654

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=6.9e-17  Score=155.09  Aligned_cols=201  Identities=9%  Similarity=0.081  Sum_probs=165.4

Q ss_pred             CchhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHH
Q 044927            1 MLQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIV   80 (467)
Q Consensus         1 lsr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (467)
                      ++|+++|++.+...+...+..++..++.+++.+++++.++|+++++++..+++...+...+.++.++..+...+..++..
T Consensus       116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (319)
T d3b60a2         116 LSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVT  195 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence            36899999999999999999999999999999999999999999988887777777777777776667776777788899


Q ss_pred             HHHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccHHHH
Q 044927           81 NFAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLIVL--LPGKHLPGFV  158 (467)
Q Consensus        81 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~  158 (467)
                      +.+.|.++|+++||+|+.|+.+.+++++..++..+...+.............++..+...++.++...  ..|.+++|.+
T Consensus       196 ~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l  275 (319)
T d3b60a2         196 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTI  275 (319)
T ss_dssp             HHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHH
T ss_pred             HHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999998888877766665555554444444443333333222221  3488999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044927          159 GLSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPPE  201 (467)
Q Consensus       159 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~~  201 (467)
                      .+++.+...+..|+..+.+.+..++++.++.+|+.|++|.|+|
T Consensus       276 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E  318 (319)
T d3b60a2         276 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE  318 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999997765

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.74  E-value=3.3e-17  Score=157.86  Aligned_cols=199  Identities=14%  Similarity=0.118  Sum_probs=164.1

Q ss_pred             chhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 044927            2 LQVSSDMSTMDFDLPSAISLSAAATTDVFIIISVMASVTWPVLIVAIPTVIVAKYIQGYYLSSARELMRMNGTTKAPIVN   81 (467)
Q Consensus         2 sr~t~D~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (467)
                      +|+++|++.+++.+...+..++..++.+++.++++++++|+++++++++.++...+...+.++.++..+...+..++..+
T Consensus       122 ~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (323)
T d2hyda2         122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQG  201 (323)
T ss_dssp             HHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHH
Confidence            68899999999999988889999999999999999999999999888888777777777777777777777778889999


Q ss_pred             HHHHHHchHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCccHHHHH
Q 044927           82 FAAETSQGVVSIRAFKMMDMFFENYLKLVDTDARLFFHSNAATEWLVLRIEALQNLIILTAALLI--VLLPGKHLPGFVG  159 (467)
Q Consensus        82 ~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~  159 (467)
                      .+.|.++|+++||.|+.|+.+.+++++..++..+...+..............+..+...++.++.  ....|.+++|.+.
T Consensus       202 ~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~  281 (323)
T d2hyda2         202 FLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA  281 (323)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999999999988887777666555555444444444443333332221  2234889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044927          160 LSLSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHLPP  200 (467)
Q Consensus       160 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~~~  200 (467)
                      +++.+...+..|+..+...+..++++.++.+|+.+++|.++
T Consensus       282 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~  322 (323)
T d2hyda2         282 AFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY  322 (323)
T ss_dssp             HHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999998654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.3e-13  Score=138.34  Aligned_cols=73  Identities=22%  Similarity=0.326  Sum_probs=62.6

Q ss_pred             CCCChhHHHHHHHHHHh----cCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHC-CCceEEEEccChhHHhhcCEEEEE
Q 044927          356 ENWSVGQRQLFCLGRVL----LKRNRILVLDEATASIDSATDAILQRIIREEF-PGSTVITVAHRVPTITDSDMFMVL  428 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARal----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl  428 (467)
                      ..||||||.++++|-.+    ..++|+++||||+++||+.+...+.+.|++.. .+.-+|+|||++..+..||+.+.+
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence            45799999998876443    46789999999999999999999999998864 355699999999999999998755

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=2.5e-12  Score=123.85  Aligned_cols=76  Identities=21%  Similarity=0.349  Sum_probs=66.3

Q ss_pred             CCCChhHHHHHHHHHH----hcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHHhhcCEEEE--Ee
Q 044927          356 ENWSVGQRQLFCLGRV----LLKRNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTITDSDMFMV--LS  429 (467)
Q Consensus       356 ~~LSgGq~Qrl~iARa----l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v--l~  429 (467)
                      ..+|+|||+...++..    ...+|+++++|||-++|+|...+.+.+.|++..++.-+|++||++..+..+|+++.  ++
T Consensus       218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~  297 (308)
T d1e69a_         218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV  297 (308)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred             hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence            4689999999877665    34568999999999999999999999999998888899999999999999999865  56


Q ss_pred             CC
Q 044927          430 YG  431 (467)
Q Consensus       430 ~G  431 (467)
                      +|
T Consensus       298 ~g  299 (308)
T d1e69a_         298 NG  299 (308)
T ss_dssp             SS
T ss_pred             CC
Confidence            66

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.75  E-value=8e-05  Score=67.32  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=33.3

Q ss_pred             CCCCEEEeeCCCCCCCHHHHHHHHHHHHH-H-CCCceEEEEccChhHHh
Q 044927          374 KRNRILVLDEATASIDSATDAILQRIIRE-E-FPGSTVITVAHRVPTIT  420 (467)
Q Consensus       374 ~~p~iliLDEpts~LD~~~~~~i~~~l~~-~-~~~~tvi~itH~l~~~~  420 (467)
                      .+..++|+||+..|-|+..-..+...+-+ + ..+.+++++||..+...
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            45679999999999999765444333322 2 23678999999877654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.00014  Score=66.14  Aligned_cols=47  Identities=9%  Similarity=0.034  Sum_probs=32.4

Q ss_pred             cCCCCEEEeeCCCCCCCHHHHHHHHHH-HHHH--CCCceEEEEccChhHH
Q 044927          373 LKRNRILVLDEATASIDSATDAILQRI-IREE--FPGSTVITVAHRVPTI  419 (467)
Q Consensus       373 ~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~--~~~~tvi~itH~l~~~  419 (467)
                      ..+..++|+||+..|-|+.....+..+ ++.+  ..+..++++||..+..
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            345569999999999999765555433 4443  2356788888876543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=5.8e-07  Score=77.84  Aligned_cols=36  Identities=25%  Similarity=0.158  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCE
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGL  284 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~  284 (467)
                      +.+.|.||+|+|||||++.+++.+....+.+.+.+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~   37 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT   37 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence            358899999999999999999999877666655443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=4e-05  Score=69.11  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI  281 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i  281 (467)
                      +|++.+++|+||+|||||+|.|.+-..-..|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            58999999999999999999999987777787753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.39  E-value=2.6e-05  Score=67.92  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      |+++.|+||||||||||++.|...++.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            889999999999999999999876653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.32  E-value=0.00031  Score=64.88  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=27.4

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      -|+++---+.+|+.+.|.|++|+||||++.-++-
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3555544479999999999999999999877763

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=2.8e-05  Score=66.06  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      +++|+|++|||||||++.|...+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999876544

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.28  E-value=6.7e-05  Score=63.99  Aligned_cols=26  Identities=38%  Similarity=0.524  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .|+.+.|.||+||||||+.+.|...+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.13  E-value=4.4e-05  Score=69.09  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRIL  280 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~  280 (467)
                      +|++.+++|+||+|||||+|.|.+-..-..|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5889999999999999999999998777778776

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0005  Score=63.15  Aligned_cols=29  Identities=34%  Similarity=0.425  Sum_probs=23.9

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      ++.++    .||+.+.|.|++|+|||||+--|+
T Consensus        22 li~G~----~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          22 VLPNM----VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             HhCCc----cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            55553    469999999999999999987654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.12  E-value=0.0001  Score=62.84  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=24.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++|-+|.|+|++||||||+.+.|+.-+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999998544

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=1e-05  Score=70.63  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=27.4

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++.++++.+| ++.|+|||||||||++.+|.-
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            56777777776 889999999999999999964

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00012  Score=62.16  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.+.++.|+||+||||||+.+.|+.-+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            567899999999999999999998654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.00011  Score=62.86  Aligned_cols=24  Identities=29%  Similarity=0.538  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.|+|.||+|||||||++.|+.-+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999999765

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00041  Score=62.76  Aligned_cols=44  Identities=20%  Similarity=0.376  Sum_probs=33.9

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI  419 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  419 (467)
                      +.+++++||+-. |.......+.+.+.+......+|++|++++-+
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i  174 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI  174 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred             CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence            567999999854 77778788888887655566789999987643

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0016  Score=55.83  Aligned_cols=25  Identities=32%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++-+.+.++|++||||||+.+-++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5568999999999999999998853

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.04  E-value=8.4e-05  Score=63.40  Aligned_cols=27  Identities=37%  Similarity=0.335  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPE  275 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~  275 (467)
                      ++++|+|++|||||||++-|.+.+...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            478999999999999999888776643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.01  E-value=0.00016  Score=61.39  Aligned_cols=28  Identities=21%  Similarity=0.479  Sum_probs=24.6

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      |+|-.+.|.||+||||||+.+.|+.-+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            5678899999999999999999987653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00019  Score=63.86  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +|..+.|+||||||||||++.|+--++
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            589999999999999999998875543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.92  E-value=0.00018  Score=60.98  Aligned_cols=26  Identities=15%  Similarity=0.316  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .++|.|.|++||||||+.+.|...+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999998874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.86  E-value=0.00039  Score=66.18  Aligned_cols=37  Identities=41%  Similarity=0.540  Sum_probs=31.3

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI  281 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i  281 (467)
                      ++.|..+.|.|++||||||+++.|++..+|..=-|.+
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            3456678999999999999999999999887655666

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.86  E-value=0.00022  Score=61.73  Aligned_cols=24  Identities=38%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +|||.||+|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999986554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.85  E-value=0.00025  Score=59.00  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +.+.|.|++||||||+.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.00037  Score=60.11  Aligned_cols=22  Identities=41%  Similarity=0.742  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      ++||+|++|+|||||++.|+|-
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999999874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.83  E-value=0.00017  Score=61.66  Aligned_cols=28  Identities=29%  Similarity=0.257  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPE  275 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~  275 (467)
                      +++++|.|++||||||+++.|+..+...
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3689999999999999999998765443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.83  E-value=0.00021  Score=60.26  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=25.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      ..+.|.||+||||||+.+.|+..+.   +.+.++|
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence            4689999999999999999998764   3444444

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00022  Score=59.45  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+.|+||+||||||+.+.|+--+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0011  Score=60.95  Aligned_cols=29  Identities=28%  Similarity=0.287  Sum_probs=24.7

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+++..-+.+.||+|+|||+|++.+++.+
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            34555668899999999999999999876

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.77  E-value=0.00027  Score=61.68  Aligned_cols=22  Identities=27%  Similarity=0.637  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999985

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.75  E-value=0.00026  Score=59.85  Aligned_cols=23  Identities=35%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+.|+||+||||||+.+.|+--+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999997543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00022  Score=61.80  Aligned_cols=26  Identities=38%  Similarity=0.503  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +|-++.|+|++||||||+.+.|+..+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998644

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.60  E-value=0.00053  Score=59.52  Aligned_cols=27  Identities=30%  Similarity=0.447  Sum_probs=23.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      |+|=.+.|+||.||||||+.+.|+--|
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            578899999999999999999999543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00043  Score=59.95  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.+.|+||||+|||||++.|+..+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999888543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.58  E-value=0.0005  Score=59.85  Aligned_cols=26  Identities=35%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +..++.|+||+||||||+.+.|+--|
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998655

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.56  E-value=0.00046  Score=59.20  Aligned_cols=22  Identities=36%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .|+|+|++|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.00056  Score=58.22  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +|+|+|++|+|||||++.|+|-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00051  Score=59.71  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 044927          251 VGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.|+||||||||||++.|+.-+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999987544

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.52  E-value=0.00041  Score=59.83  Aligned_cols=22  Identities=41%  Similarity=0.581  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      -|||+|++++|||||++.|+|-
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999874

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00062  Score=60.20  Aligned_cols=23  Identities=35%  Similarity=0.654  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++||.|++||||||+.+.|.-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999887654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00069  Score=56.73  Aligned_cols=24  Identities=38%  Similarity=0.643  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      |=+++++|++|+|||||++.|+|.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            447899999999999999999974

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00066  Score=56.33  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999974

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.39  E-value=0.00071  Score=56.19  Aligned_cols=21  Identities=38%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.|+|++|||||||++.+.+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.00078  Score=57.71  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +|+|+|++|+|||||++.|+|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.37  E-value=0.00074  Score=56.47  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++|||++|||||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.00073  Score=58.94  Aligned_cols=21  Identities=43%  Similarity=0.727  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 044927          251 VGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +.|+||||||||||++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999998654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.36  E-value=0.00067  Score=57.73  Aligned_cols=25  Identities=28%  Similarity=0.294  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .-+++|||++|||||||++.+.+-.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999998754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.00082  Score=57.28  Aligned_cols=22  Identities=36%  Similarity=0.640  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +|+|+|.+|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.29  E-value=0.00063  Score=58.38  Aligned_cols=21  Identities=43%  Similarity=0.774  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 044927          251 VGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl  271 (467)
                      |||+|++|+|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.00085  Score=58.65  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .++|+|++|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999874

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.26  E-value=0.00097  Score=59.65  Aligned_cols=23  Identities=48%  Similarity=0.564  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++|+|+.|||||||++.|.+..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            58999999999999999998643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.00099  Score=57.98  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=25.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVEPENGRILID  282 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~  282 (467)
                      +-.++.|+||.||||||+.+.|+.-|    |-+.++
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is   38 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS   38 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence            34579999999999999999999866    445554

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.25  E-value=0.00083  Score=58.51  Aligned_cols=117  Identities=14%  Similarity=0.123  Sum_probs=60.1

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCCccccccHHHhcCcCCCCCH
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEPTLFRGSVRTNLDPLGMYSD  324 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~enl~~~~~~~~  324 (467)
                      ++++.++.|+||.||||||+.+.|+.-|    |-..++--       +-+|..+   ..... ....+.+.+......++
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g-------~llr~~~---~~~~~-~~~~~~~~~~~~~~~~~   69 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTG-------DLLRAEV---SSGSA-RGKMLSEIMEKGQLVPL   69 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHH-------HHHHHHH---HHTCH-HHHHHHHHHTTTCCCCH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEecc-------HHHHHHH---HHhHh-hhhhhHHHHhhccCCch
Confidence            4567899999999999999999998755    33444321       1122211   00111 11133444433334455


Q ss_pred             HHHHHHHHHcChHHHHHhCCCcccccccCCCCCCChhHHHHHHHHHHhcCCCCEEEeeCC
Q 044927          325 NEIWEAMEKCQLKATISRLPMLLDSSVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEA  384 (467)
Q Consensus       325 ~~~~~~~~~~~l~~~i~~l~~g~~t~v~~~g~~LSgGq~Qrl~iARal~~~p~iliLDEp  384 (467)
                      +-+...+..     .+...+...+..+-   ..+..-..|--.+.+.+......+.+|.|
T Consensus        70 ~~~~~~~~~-----~l~~~~~~~~g~il---dg~pr~~~qa~~~~~~~~~~~~~~~~~~~  121 (194)
T d3adka_          70 ETVLDMLRD-----AMVAKVDTSKGFLI---DGYPREVKQGEEFERKIGQPTLLLYVDAG  121 (194)
T ss_dssp             HHHHHHHHH-----HHHTTTTTCSCEEE---ESCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred             heeeeehhh-----hhhhccccccccee---eeccchhHHHHHHHHHhCCccchhccccc
Confidence            544444332     22222111111111   12455667777777777665566666654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.23  E-value=0.00089  Score=56.63  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+.|+|++||||||+.+.|+-.+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0013  Score=57.00  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=23.9

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++|+.+.|.||+|||||||+.-++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            79999999999999999999887764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.00065  Score=57.99  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      =.|+|+|++++|||||++.|.|..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            359999999999999999998864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.20  E-value=0.00094  Score=56.86  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.+.++|++||||||+.+.|+--+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            346799999999999999997543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.16  E-value=0.0012  Score=56.48  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.|+||.||||||+.+.|+--|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.14  E-value=0.0017  Score=54.58  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|+.|||||||++.+.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            58899999999999999998754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.13  E-value=0.0011  Score=60.64  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++|+|++|+|||||+|.|+|--
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.11  E-value=0.001  Score=57.66  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.|.||.||||||+.+.|+--|
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999998655

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0014  Score=56.67  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.|+||.||||||..+.|+--|
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998644

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.04  E-value=0.0014  Score=55.92  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +++.|.|++||||||+.+.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4677899999999999999987664

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0032  Score=53.14  Aligned_cols=28  Identities=32%  Similarity=0.515  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc-----CCCCCcc
Q 044927          250 RVGVVGRTGSGKTTLISALFR-----LVEPENG  277 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g-----l~~p~~G  277 (467)
                      +++++|.+|+|||||++-+.+     -+.|+-|
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~   36 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE   36 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence            589999999999999998765     3455545

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.02  E-value=0.0015  Score=56.09  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.|+||.||||||+.+.|+--|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999655

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0033  Score=55.73  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=33.2

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI  419 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  419 (467)
                      +.+++++||.- .+.......+...+.+..+...+++++++...+
T Consensus        99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i  142 (227)
T d1sxjc2          99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL  142 (227)
T ss_dssp             SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence            35799999974 577778888888888776666777788776643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.00  E-value=0.0013  Score=58.15  Aligned_cols=27  Identities=48%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++.+++++||+|+||||.+--|+..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999998777776554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.95  E-value=0.00052  Score=57.50  Aligned_cols=22  Identities=36%  Similarity=0.647  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +++++|++|+|||||++.|.|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.95  E-value=0.0016  Score=55.08  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 044927          251 VGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.++|++||||||+.+.|+.-+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6688999999999999998554

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0013  Score=58.90  Aligned_cols=27  Identities=26%  Similarity=0.496  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +++.|+|-|+-||||||+++.|...++
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999999998764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.91  E-value=0.0017  Score=56.64  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .+.++|.+||||||+.+.|+..+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999997553

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.91  E-value=0.0017  Score=56.11  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++||.|++||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.91  E-value=0.0061  Score=55.94  Aligned_cols=52  Identities=29%  Similarity=0.405  Sum_probs=37.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh---cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcC
Q 044927          250 RVGVVGRTGSGKTTLISALF---RLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQ  303 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~---gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q  303 (467)
                      .+||+|..|||||||+..|+   |.. ...|++. +|....++.+.+..+.+++-..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~   58 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTTVRTG   58 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSCCSCE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCCeEEee
Confidence            47999999999999999984   433 2456654 6667777878777776654433

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.89  E-value=0.0018  Score=57.18  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC---CCCccEE
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV---EPENGRI  279 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~---~p~~G~i  279 (467)
                      +++|-||+||||||..+.|+--|   ..++|.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl   37 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   37 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            57889999999999999998544   3445544

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0019  Score=55.20  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.|+||.||||||..+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998544

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.80  E-value=0.0018  Score=58.71  Aligned_cols=33  Identities=42%  Similarity=0.545  Sum_probs=25.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      .-+.+.||+|||||||.+.|++.+..  +-+.+++
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            45889999999999999999997643  3455554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0014  Score=61.63  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++||.|++||||||+.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            789999999999999999987653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0022  Score=56.36  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc---CCCCCccEE
Q 044927          250 RVGVVGRTGSGKTTLISALFR---LVEPENGRI  279 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g---l~~p~~G~i  279 (467)
                      +|+|.||+||||||+.+.|+-   +...++|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            899999999999999999984   444455555

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0025  Score=54.09  Aligned_cols=21  Identities=33%  Similarity=0.632  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            488999999999999998874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.76  E-value=0.0022  Score=54.23  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      +.=+++++|.+|||||||++.+.+-
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3347899999999999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.72  E-value=0.0024  Score=54.60  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+.|+||.||||||+.+.|+--|
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997554

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.72  E-value=0.0021  Score=55.68  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+|+|-|+.||||||+++.|...+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0045  Score=52.03  Aligned_cols=22  Identities=18%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      -+++|+|+.|+|||||++.+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0026  Score=56.25  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=24.0

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++|.+|+|-|+-||||||+++.|..-+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999987654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.67  E-value=0.0026  Score=54.56  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 044927          251 VGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +||+|+..||||||++.|++..
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999998743

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0029  Score=55.55  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +|..|+|-|+-||||||+++.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999998644

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0026  Score=55.64  Aligned_cols=22  Identities=41%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +.|+|+|+.|+|||||++.+.+
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999999986

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.62  E-value=0.0029  Score=55.91  Aligned_cols=42  Identities=26%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEP--ENGRILIDGLDIC  287 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p--~~G~i~i~g~~i~  287 (467)
                      ++|.++-+.|.+||||||+.+.|..-+..  .--.+.+||..+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            67889999999999999999998743311  1135678885543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0035  Score=61.14  Aligned_cols=24  Identities=42%  Similarity=0.645  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .|||+|++|+|||||+|.|.|...
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            489999999999999999999654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0071  Score=50.91  Aligned_cols=21  Identities=29%  Similarity=0.744  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.++|++|+|||||++-+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999998874

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.49  E-value=0.0033  Score=54.52  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      =.+.|+||.||||||+.+.|+--|
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999755

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.49  E-value=0.0031  Score=53.29  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0022  Score=56.82  Aligned_cols=27  Identities=41%  Similarity=0.428  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +-.++++|||+|+||||.+--|+..+.
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346899999999999998877776554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.48  E-value=0.0029  Score=56.17  Aligned_cols=27  Identities=33%  Similarity=0.413  Sum_probs=20.9

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++..++++|||+|+||||.+--|+-.+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            455689999999999998876666443

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.004  Score=55.24  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=23.2

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      +++|+++.|.||+|||||||..-++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            7999999999999999999997665

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0019  Score=61.29  Aligned_cols=27  Identities=37%  Similarity=0.578  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      .-++||.||.|||||||++.|.+.+..
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999876543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0036  Score=53.58  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.|+||.||||||+.+.|+--|
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999998654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.44  E-value=0.0034  Score=53.13  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|+.|+|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.006  Score=51.48  Aligned_cols=21  Identities=38%  Similarity=0.602  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|.+|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999997754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.41  E-value=0.0035  Score=54.99  Aligned_cols=21  Identities=43%  Similarity=0.623  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++||.|+.||||||+.+.+.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.028  Score=50.15  Aligned_cols=43  Identities=9%  Similarity=0.155  Sum_probs=34.6

Q ss_pred             CCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927          376 NRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI  419 (467)
Q Consensus       376 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  419 (467)
                      .+++|+||+=. |+......+.+.+.+...+..+|++|++++-+
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence            56999999864 78888888888887665678899999988754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.35  E-value=0.0037  Score=52.45  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0075  Score=53.01  Aligned_cols=44  Identities=9%  Similarity=0.156  Sum_probs=32.0

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI  419 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  419 (467)
                      +.+++|+||+= .|...+...+.+.+++-.++..+|++|++++-+
T Consensus       108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2         108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERL  151 (207)
T ss_dssp             SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred             ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence            47899999864 355667777777777655566678899988743

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.0042  Score=54.95  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +|..|+|-|+-||||||++++|.-.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            699999999999999999999986554

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0051  Score=51.64  Aligned_cols=21  Identities=38%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0041  Score=52.81  Aligned_cols=21  Identities=38%  Similarity=0.727  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|+.|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.20  E-value=0.0038  Score=58.63  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.-+.++||+|||||.|.|.|+..+
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcc
Confidence            3456799999999999999999875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.16  E-value=0.006  Score=51.07  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0051  Score=52.63  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.0049  Score=51.72  Aligned_cols=21  Identities=24%  Similarity=0.607  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.05  E-value=0.003  Score=58.54  Aligned_cols=24  Identities=21%  Similarity=0.462  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++||.|+|||||||+.+.|.-.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            799999999999999999877553

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.03  E-value=0.0053  Score=52.52  Aligned_cols=21  Identities=33%  Similarity=0.656  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|.+|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998774

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0052  Score=52.02  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++-+.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.00  E-value=0.006  Score=53.81  Aligned_cols=27  Identities=33%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ...++.++||+|+||||.+--|+..+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346789999999999998877776553

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.0054  Score=55.04  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .+.+.||+|+||||++++++..+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999998654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0056  Score=51.38  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0099  Score=49.55  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.96  E-value=0.0045  Score=55.23  Aligned_cols=28  Identities=29%  Similarity=0.318  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENG  277 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G  277 (467)
                      .+.+.||+|+||||+.++++..+....+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            3679999999999999999987765533

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0063  Score=51.24  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +++++|++|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            58899999999999999988754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.93  E-value=0.0034  Score=55.62  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=17.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +..++++|||+|+||||.+--|+..+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45679999999999999877666544

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.92  E-value=0.0073  Score=53.08  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHH
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISAL  268 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l  268 (467)
                      +++|+.+.|.|++|+|||||+.-+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            899999999999999999998543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0067  Score=54.05  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      +++|+.+.|.||+||||||+...++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            7999999999999999999988776

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0088  Score=50.55  Aligned_cols=24  Identities=33%  Similarity=0.565  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++.++|..|+|||||++.+.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCcC
Confidence            578999999999999999987543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0064  Score=53.37  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++||.|..||||||..+.+..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999998864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.86  E-value=0.012  Score=49.33  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|.+|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.86  E-value=0.0073  Score=53.85  Aligned_cols=25  Identities=36%  Similarity=0.444  Sum_probs=22.5

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      +++|+.+.|.||+||||||+.--++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            7999999999999999999987553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.83  E-value=0.0079  Score=53.51  Aligned_cols=26  Identities=35%  Similarity=0.535  Sum_probs=23.6

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++|+.+.|.||+||||||++.-++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999999999876654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.82  E-value=0.0051  Score=52.48  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      =+++++|++|+|||||++.+.+
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4688999999999999998854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.82  E-value=0.0062  Score=54.06  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=30.5

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI  419 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  419 (467)
                      ++.++++||.- .+.......+...+........+|+++++.+.+
T Consensus       109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i  152 (231)
T d1iqpa2         109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI  152 (231)
T ss_dssp             SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhc
Confidence            67899999963 344455556666776655567788888887654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.82  E-value=0.0072  Score=50.79  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=26.5

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ..++|.++++.|+=||||||+.|.++.-+-
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            357899999999999999999999987654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.81  E-value=0.011  Score=50.62  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=25.8

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      .++.-.+.+ .|.-+.|.|+||+||||+...+.
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            456555666 78889999999999999987665

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.80  E-value=0.0069  Score=54.45  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          247 EGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .+..+.|.||.|+|||||++.++.-
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            4678999999999999999987643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.79  E-value=0.0059  Score=59.44  Aligned_cols=28  Identities=32%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .++-.+.+.||+||||||++..++...+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4667899999999999999999988654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.78  E-value=0.0079  Score=53.14  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhc
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++|+.+.|.|++|+||||+..-++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999999999887763

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.013  Score=49.82  Aligned_cols=21  Identities=43%  Similarity=0.797  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|.+|+|||||++-+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999997765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0087  Score=50.41  Aligned_cols=21  Identities=29%  Similarity=0.634  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.++|+.|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.72  E-value=0.013  Score=49.19  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.++|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.71  E-value=0.0073  Score=50.41  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|..|+|||||++-+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0082  Score=50.73  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999987764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0074  Score=50.59  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.|+|.+|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0079  Score=54.79  Aligned_cols=28  Identities=36%  Similarity=0.366  Sum_probs=23.4

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++..-+.+.||+|||||++++.|+..+.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            3445678999999999999999998653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.014  Score=49.11  Aligned_cols=21  Identities=38%  Similarity=0.676  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.++|.+|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.58  E-value=0.0086  Score=53.74  Aligned_cols=29  Identities=31%  Similarity=0.566  Sum_probs=24.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEPEN  276 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p~~  276 (467)
                      ...+.|.||.|+||||+++.++..+....
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~   71 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDKT   71 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhccc
Confidence            35788999999999999999998775433

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.57  E-value=0.0072  Score=53.92  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 044927          251 VGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +.+.||+|+||||+++++++.+.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56999999999999999998653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.0074  Score=53.49  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 044927          251 VGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +.+.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0086  Score=50.23  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++|+|.+|+|||||++-+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0086  Score=50.80  Aligned_cols=21  Identities=24%  Similarity=0.605  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|..|+|||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.0083  Score=50.86  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.++|++|+|||||++.+.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999988774

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.42  E-value=0.0087  Score=53.26  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      ++||+|...||||||++.|++-
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.007  Score=51.10  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|++|+|||||++.+.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0088  Score=50.48  Aligned_cols=21  Identities=29%  Similarity=0.653  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|..|+|||||++-+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.009  Score=50.49  Aligned_cols=21  Identities=33%  Similarity=0.571  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.0093  Score=50.88  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|.+|+|||||++-+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999987764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.39  E-value=0.0098  Score=51.59  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +|+|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.39  E-value=0.0096  Score=55.04  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++||-|+.|||||||.+.|.-
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            789999999999999987754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.0098  Score=49.96  Aligned_cols=21  Identities=14%  Similarity=0.474  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|..|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999997664

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.0093  Score=51.47  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++|+|+.|+|||||++.+.+
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            389999999999999998774

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.018  Score=48.88  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.++|.+|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            678999999999999986653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.0084  Score=55.40  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=27.9

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      =+.|-+|++.+|+|++|+|||||+..|+.-.
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3788999999999999999999999998744

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.24  E-value=0.0079  Score=50.77  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ++.++|++|+|||||++.+.+-.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999987544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.21  E-value=0.0074  Score=51.02  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=9.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|..|+|||||++.+++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.21  E-value=0.011  Score=55.78  Aligned_cols=25  Identities=48%  Similarity=0.691  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .-++||.||.|||||||+..|...+
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.015  Score=48.83  Aligned_cols=21  Identities=19%  Similarity=0.553  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ++.++|..|+|||||++-+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            678999999999999998873

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.012  Score=49.41  Aligned_cols=21  Identities=38%  Similarity=0.581  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|+.|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999997653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.93  E-value=0.012  Score=53.26  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .-+.+.||+|||||++.+.|+..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            35789999999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.84  E-value=0.025  Score=48.21  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=23.8

Q ss_pred             eecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          237 VLKGITCTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       237 ~L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      .++.-.+ --.|.-+.|.|+||+||||+.-.+.
T Consensus         4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3444334 3457789999999999999987655

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.015  Score=48.66  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++++|.+|+|||||++-+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999998763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.75  E-value=0.013  Score=49.90  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRI  279 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i  279 (467)
                      ++.++|..|+|||||++-+..-..|+.|-.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            578999999999999998877667777743

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.016  Score=49.46  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      +++|+|.+|+|||||++-+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999987663

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.61  E-value=0.014  Score=51.34  Aligned_cols=44  Identities=18%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             CCCEEEeeCCCCCCCHHHHHHHHHHHHHHCCCceEEEEccChhHH
Q 044927          375 RNRILVLDEATASIDSATDAILQRIIREEFPGSTVITVAHRVPTI  419 (467)
Q Consensus       375 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~  419 (467)
                      +.+++++||.-. +.......+...+.+.......++++++.+-+
T Consensus       101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i  144 (224)
T d1sxjb2         101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI  144 (224)
T ss_dssp             CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence            467999999654 55556666777777766677888888887654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.57  E-value=0.017  Score=51.06  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHh-cCCCCCcc
Q 044927          249 TRVGVVGRTGSGKTTLISALF-RLVEPENG  277 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~-gl~~p~~G  277 (467)
                      -++.++|.+|+|||||++-+. +-+.|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            378999999999999998764 55567766

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.44  E-value=0.019  Score=49.14  Aligned_cols=28  Identities=25%  Similarity=0.497  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh--cCCCCCcc
Q 044927          250 RVGVVGRTGSGKTTLISALF--RLVEPENG  277 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~--gl~~p~~G  277 (467)
                      ++.++|.+|+|||||++-+.  --+.|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            68899999999999999873  33467878

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.41  E-value=0.015  Score=57.28  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=27.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLD  285 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~  285 (467)
                      +-+.++||+|||||-|.+.|+++....  -+..|+..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~   84 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATK   84 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGG
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecce
Confidence            356899999999999999999977542  45555543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.36  E-value=0.02  Score=51.72  Aligned_cols=23  Identities=39%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+.+.||+|+|||++++.+++.+
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            37899999999999999999754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.25  E-value=0.021  Score=51.81  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+.+.||+|+|||++++.++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeEEecCCCCCchHHHHHHHHHh
Confidence            47899999999999999999864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.019  Score=52.80  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+|+|+||.++|||||++.|+|-.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            589999999999999999999865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.02  Score=49.11  Aligned_cols=20  Identities=35%  Similarity=0.444  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 044927          250 RVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~  269 (467)
                      +++++|++|+|||||++-+.
T Consensus         5 KvvllG~~~vGKTSli~r~~   24 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            58999999999999998765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.15  E-value=0.022  Score=50.63  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 044927          249 TRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~g  270 (467)
                      .++||.|+-||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999954

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.12  E-value=0.025  Score=48.75  Aligned_cols=22  Identities=45%  Similarity=0.644  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 044927          251 VGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      +||+|...+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999864

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.11  E-value=0.022  Score=52.80  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+++||.-+||||||+++|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999965

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.11  E-value=0.035  Score=46.96  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             ecceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          238 LKGITCTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       238 L~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      ++.. +-.-.|.-+.|.|+||+||||+.-.+.
T Consensus         6 ~H~~-~v~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           6 LHGV-LVDVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EESE-EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEE-EEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence            4443 334568889999999999999886554

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.11  E-value=0.02  Score=52.72  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .++++|.-.||||||+++|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            48899999999999999999965

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.018  Score=52.55  Aligned_cols=42  Identities=26%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEEcCEe
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVE-PENGRILIDGLD  285 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~-p~~G~i~i~g~~  285 (467)
                      -+++|.++-|.||+|||||||+-.++.-.. +..--+++|...
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            478999999999999999999877765543 333346777653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.02  E-value=0.024  Score=52.04  Aligned_cols=51  Identities=16%  Similarity=0.330  Sum_probs=24.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh---cCCCCCccEEEEcCEeCCCCCHHHHhcccEEEc
Q 044927          250 RVGVVGRTGSGKTTLISALF---RLVEPENGRILIDGLDICSMGLKDLRTKLSIIP  302 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~---gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~  302 (467)
                      .+||+|..|||||||+..|+   |..+ ..|++. +|..+.+..+.+..+.+++-.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~   61 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITA   61 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCcccc
Confidence            57999999999999999984   5443 346663 455556666666666555433

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.97  E-value=0.023  Score=52.98  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+||||..-+|||||+++|+|--
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999998853

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.68  E-value=0.024  Score=52.43  Aligned_cols=35  Identities=29%  Similarity=0.619  Sum_probs=27.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC------------CCCccEEEEcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV------------EPENGRILIDG  283 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~------------~p~~G~i~i~g  283 (467)
                      =++||||...||||||+++|++--            +|.-|.+.+..
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d   57 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   57 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence            369999999999999999999752            44567776543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.64  E-value=0.018  Score=51.74  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+.+.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999998765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.028  Score=49.74  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      +.++|=|+-||||||+++.|.-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            5899999999999999999987553

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.52  E-value=0.012  Score=55.37  Aligned_cols=27  Identities=37%  Similarity=0.420  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          248 GTRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      |.-+.|+||.|+|||||++.+.++++|
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence            446889999999999999999999987

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=92.23  E-value=0.031  Score=53.35  Aligned_cols=29  Identities=34%  Similarity=0.328  Sum_probs=26.1

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      ++++..+.+.||.|+||||+.+.|++++.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            36778999999999999999999999875

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.06  E-value=0.037  Score=50.57  Aligned_cols=31  Identities=32%  Similarity=0.654  Sum_probs=26.8

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      .=+.+-+|++++|.|++|+|||||+.-++.-
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            3378999999999999999999998877653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.99  E-value=0.063  Score=48.97  Aligned_cols=33  Identities=36%  Similarity=0.623  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-----------CCCccEEEEc
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV-----------EPENGRILID  282 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~-----------~p~~G~i~i~  282 (467)
                      ++||||-.-+|||||++.|++--           +|.-|.|.+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~   47 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP   47 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence            68999999999999999999543           4555777654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.93  E-value=0.039  Score=51.50  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=25.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      ..+.++||+|+|||.|.+.|+..+..  --|.+|.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~   85 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM   85 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccC--CeeEecc
Confidence            35789999999999999999987642  2455554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.93  E-value=0.029  Score=51.19  Aligned_cols=54  Identities=22%  Similarity=0.326  Sum_probs=37.4

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccE-EEEcCEeCCCCCHHHHhcccEE
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGR-ILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~-i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      -++.|.++-+.||+||||||++-.++....-..|. |+||...  .++++.++ ++|.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~Gv  110 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGV  110 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHH-HhCC
Confidence            47899999999999999999987666655444555 5667653  34444333 3443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.53  E-value=0.034  Score=50.70  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcccEE
Q 044927          244 TFKEGTRVGVVGRTGSGKTTLISALFRLVEPENG-RILIDGLDICSMGLKDLRTKLSI  300 (467)
Q Consensus       244 ~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~i~~  300 (467)
                      -++.|.++-|.||+|||||||+..++....-..| -+++|...  .++++ +.+++|+
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv  107 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV  107 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHH-HHHHhCC
Confidence            4689999999999999999999888766543334 46666642  34443 3334554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.32  E-value=0.044  Score=47.73  Aligned_cols=21  Identities=48%  Similarity=0.670  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 044927          250 RVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~g  270 (467)
                      .+|++|..+||||||+..|++
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            479999999999999999964

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.14  E-value=0.049  Score=46.17  Aligned_cols=28  Identities=29%  Similarity=0.471  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC---CCCCcc
Q 044927          250 RVGVVGRTGSGKTTLISALFRL---VEPENG  277 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl---~~p~~G  277 (467)
                      ++.++|..|+|||||++-+..-   +.|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            5789999999999999988642   345555

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.87  E-value=0.064  Score=46.41  Aligned_cols=24  Identities=42%  Similarity=0.668  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .+||+|.-.+|||||++.|+|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            579999999999999999998654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.49  E-value=0.068  Score=48.71  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhc
Q 044927          248 GTRVGVVGRTGSGKTTLISALFR  270 (467)
Q Consensus       248 Ge~~~ivG~sGsGKSTll~~l~g  270 (467)
                      ..+++|+|..|.|||||++.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.32  E-value=0.052  Score=49.60  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=30.2

Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q 044927          242 TCTFKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILI  281 (467)
Q Consensus       242 sl~i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i  281 (467)
                      =+.+-+|++++|+|++|+|||+|+..+..-..-+...+.+
T Consensus        61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~  100 (276)
T d1fx0a3          61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY  100 (276)
T ss_dssp             TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred             cccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence            3788999999999999999999998655444434444333

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.29  E-value=0.049  Score=52.60  Aligned_cols=34  Identities=26%  Similarity=0.476  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHH-hcCCCCCccEEEEc
Q 044927          249 TRVGVVGRTGSGKTTLISAL-FRLVEPENGRILID  282 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l-~gl~~p~~G~i~i~  282 (467)
                      ..+.|+|++|||||++++.+ ...+....+-|.+|
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            45899999999999998644 34444334445554

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.00  E-value=0.11  Score=48.82  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRILI  281 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i  281 (467)
                      +|.|=|+-||||||+++.|..-+....+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence            57899999999999999999987654443333

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.86  E-value=0.031  Score=44.43  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=18.0

Q ss_pred             EeCCcEEEEEcCCCCcHHHHH
Q 044927          245 FKEGTRVGVVGRTGSGKTTLI  265 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll  265 (467)
                      +++|+.+.|.+|+|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999554

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.51  E-value=0.059  Score=50.32  Aligned_cols=29  Identities=38%  Similarity=0.494  Sum_probs=22.9

Q ss_pred             EEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          243 CTFKEGTRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       243 l~i~~Ge~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      ...++| .+.++||+|+|||.|.+.|++..
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            445555 55668999999999999999754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.34  E-value=0.07  Score=50.80  Aligned_cols=31  Identities=29%  Similarity=0.433  Sum_probs=23.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 044927          251 VGVVGRTGSGKTTLISALFRLVEPENGRILIDG  283 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g  283 (467)
                      +.++||||+|||-|.|.|+.+++.  .-+.+|-
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~  101 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA  101 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred             eeeeCCCCccHHHHHHHHHhhccc--ceeehhh
Confidence            568899999999999999987632  3444443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.25  E-value=0.11  Score=47.04  Aligned_cols=56  Identities=21%  Similarity=0.236  Sum_probs=37.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcccEEEcCCC
Q 044927          246 KEGTRVGVVGRTGSGKTTLISALFRLVEPENGRILIDGLDICSMGLKDLRTKLSIIPQEP  305 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~  305 (467)
                      ++-.++.+.||.++||||++++|..++ +..|.+  ++. -+......+..+--.+.+|+
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~~-~~~f~l~~l~~k~~~~~~e~  157 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NWT-NENFPFNDCVDKMVIWWEEG  157 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CTT-CSSCTTGGGSSCSEEEECSC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--ccc-CCCccccccCCCEEEEEeCC
Confidence            556788999999999999999999998 555533  221 12334455554444444555

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.88  E-value=0.078  Score=46.69  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 044927          250 RVGVVGRTGSGKTTLISALFRL  271 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl  271 (467)
                      ++.|.|.=|||||||++-++.-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            5789999999999999999874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.79  E-value=0.099  Score=45.68  Aligned_cols=69  Identities=22%  Similarity=0.300  Sum_probs=42.6

Q ss_pred             cCCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHC-CCceEEEEccChh-HHhh--cCEEEEEeCCEEEEecChhh
Q 044927          373 LKRNRILVLDEATASI-DSATDAILQRIIREEF-PGSTVITVAHRVP-TITD--SDMFMVLSYGELVEYDLPSK  441 (467)
Q Consensus       373 ~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~~~--~d~i~vl~~G~iv~~g~~~~  441 (467)
                      +++.++|++|+--.=- ++..+..+...+.... .++.+|+.+.... .+..  .|=.--+..|-+++-.++++
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~  168 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNK  168 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHH
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcH
Confidence            4579999999974432 5677888888887753 5677777776533 3321  12222246777766644444

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.26  E-value=0.12  Score=48.35  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCccEEE
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVEPENGRIL  280 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~p~~G~i~  280 (467)
                      +|.|=|+-||||||+++.|...+......+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~   37 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRIL   37 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceE
Confidence            5889999999999999999987765433343

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.08  E-value=0.11  Score=41.46  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=23.3

Q ss_pred             HhcCCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 044927          371 VLLKRNRILVLDEATASIDSATDAILQRIIREE  403 (467)
Q Consensus       371 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~  403 (467)
                      -.+.+-+++|+||.= .+|..+...+...++..
T Consensus        90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~  121 (136)
T d1a1va1          90 CSGGAYDIIICDECH-STDATSILGIGTVLDQA  121 (136)
T ss_dssp             GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred             hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence            345678999999985 46888777676666553

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.04  E-value=0.076  Score=48.67  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=25.1

Q ss_pred             eeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 044927          241 ITCTFKEGTRVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       241 isl~i~~Ge~~~ivG~sGsGKSTll~~l~  269 (467)
                      .=+++-+|++++|.|++|+|||+|+.-+.
T Consensus        61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            33789999999999999999999986554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.98  E-value=0.12  Score=48.11  Aligned_cols=35  Identities=34%  Similarity=0.389  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-CCCccEEEEcCE
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV-EPENGRILIDGL  284 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~-~p~~G~i~i~g~  284 (467)
                      .+.++||+|+|||.+.+.|+..+ .....-+.+|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~   90 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   90 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecc
Confidence            57799999999999999999865 223345566553

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.78  E-value=0.12  Score=44.52  Aligned_cols=23  Identities=39%  Similarity=0.726  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .+|++|.-++|||||++.|.+..
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHH
Confidence            37999999999999999998643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.56  E-value=0.15  Score=46.28  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      .-+.||||+|+|||+++.-++..+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            456899999999999999988654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=0.17  Score=43.58  Aligned_cols=23  Identities=26%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLV  272 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~  272 (467)
                      -+.+|||+|.|||+++.-++.-.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            56899999999999999998644

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.96  E-value=0.14  Score=47.74  Aligned_cols=24  Identities=42%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 044927          250 RVGVVGRTGSGKTTLISALFRLVE  273 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~gl~~  273 (467)
                      .|+|=|+-||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            588999999999999999987654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.41  E-value=0.22  Score=45.02  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCC
Q 044927          249 TRVGVVGRTGSGKTTLISALFRLVEP  274 (467)
Q Consensus       249 e~~~ivG~sGsGKSTll~~l~gl~~p  274 (467)
                      -.+++||..-+|||||+|.|.|-...
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~~~~~  138 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAKKNIA  138 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             eEEEEEecCccchhhhhhhhhccceE
Confidence            35999999999999999999996543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=84.75  E-value=0.25  Score=43.30  Aligned_cols=19  Identities=37%  Similarity=0.541  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 044927          251 VGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       251 ~~ivG~sGsGKSTll~~l~  269 (467)
                      ++++|.-.+|||||+..|+
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7999999999999999995

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.72  E-value=0.1  Score=46.03  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=18.5

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHH
Q 044927          246 KEGTRVGVVGRTGSGKTTLISAL  268 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l  268 (467)
                      -.|+-+.+++|+|+|||+..-+.
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~   78 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAM   78 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHH
Confidence            36888999999999999765443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.49  E-value=0.23  Score=43.49  Aligned_cols=20  Identities=35%  Similarity=0.632  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 044927          250 RVGVVGRTGSGKTTLISALF  269 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll~~l~  269 (467)
                      .++++|..++|||||+..|+
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            37999999999999999885

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=83.75  E-value=0.18  Score=45.67  Aligned_cols=19  Identities=26%  Similarity=0.317  Sum_probs=17.4

Q ss_pred             EeCCcEEEEEcCCCCcHHH
Q 044927          245 FKEGTRVGVVGRTGSGKTT  263 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKST  263 (467)
                      +.+|+.+.+.+|+|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            5689999999999999997

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.57  E-value=13  Score=32.02  Aligned_cols=37  Identities=0%  Similarity=-0.102  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044927          162 LSYALTLSSIQVIMTRWYCNLSNNIVSVERIRQFMHL  198 (467)
Q Consensus       162 ~~~~~~l~~~~~~l~~~~~~~~~~~~s~~ri~~~~~~  198 (467)
                      +.+..........+............+..-...+.+.
T Consensus       276 ~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~el  312 (319)
T d3b60a2         276 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI  312 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333344444444443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=83.51  E-value=0.19  Score=43.43  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE
Q 044927          245 FKEGTRVGVVGRTGSGKTTLISALFRLVEPENGRI  279 (467)
Q Consensus       245 i~~Ge~~~ivG~sGsGKSTll~~l~gl~~p~~G~i  279 (467)
                      +++-.++.+.||.++|||++..+|+.++.   |.+
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~---G~v   81 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ---GAV   81 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT---CEE
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC---CEE
Confidence            47778999999999999999999999863   554

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.94  E-value=0.38  Score=39.68  Aligned_cols=56  Identities=18%  Similarity=0.064  Sum_probs=45.2

Q ss_pred             CCCEEEeeCCCCCCCH--HHHHHHHHHHHHHCCCceEEEEccChh--HHhhcCEEEEEeC
Q 044927          375 RNRILVLDEATASIDS--ATDAILQRIIREEFPGSTVITVAHRVP--TITDSDMFMVLSY  430 (467)
Q Consensus       375 ~p~iliLDEpts~LD~--~~~~~i~~~l~~~~~~~tvi~itH~l~--~~~~~d~i~vl~~  430 (467)
                      +.+++||||-..+++.  ..+..+.+.|++..++.-+|++-++..  .++.||.|--|..
T Consensus        94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          94 LLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             ccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            4799999999999865  468899999988767788888888764  4567999987754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.15  E-value=0.35  Score=38.04  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=28.2

Q ss_pred             eCCcEEEEEcCCCCcHHHHHHHH-hcCCCCCcc-EEE-EcCE
Q 044927          246 KEGTRVGVVGRTGSGKTTLISAL-FRLVEPENG-RIL-IDGL  284 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll~~l-~gl~~p~~G-~i~-i~g~  284 (467)
                      ++|=.+-+-|-+||||||+.+.| ..|.+-..| .|. +||.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            45778889999999999999988 466664433 344 4554

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=82.15  E-value=0.26  Score=44.98  Aligned_cols=16  Identities=31%  Similarity=0.559  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHH
Q 044927          250 RVGVVGRTGSGKTTLI  265 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll  265 (467)
                      .+.|.|+.||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4679999999999865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=81.99  E-value=0.52  Score=44.31  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHH
Q 044927          247 EGTRVGVVGRTGSGKTTLIS  266 (467)
Q Consensus       247 ~Ge~~~ivG~sGsGKSTll~  266 (467)
                      .+.++.|.||.|+||||++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHH
Confidence            35689999999999999874

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=80.88  E-value=0.33  Score=43.67  Aligned_cols=16  Identities=44%  Similarity=0.557  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCcHHHHH
Q 044927          250 RVGVVGRTGSGKTTLI  265 (467)
Q Consensus       250 ~~~ivG~sGsGKSTll  265 (467)
                      -+.|+|+.||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4679999999999764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.83  E-value=0.35  Score=44.47  Aligned_cols=20  Identities=40%  Similarity=0.584  Sum_probs=17.8

Q ss_pred             eCCcEEEEEcCCCCcHHHHH
Q 044927          246 KEGTRVGVVGRTGSGKTTLI  265 (467)
Q Consensus       246 ~~Ge~~~ivG~sGsGKSTll  265 (467)
                      +.|++..+-|-||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            45888999999999999976