Citrus Sinensis ID: 044934

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK
Secondary Structure (PSIPRED)
cccEEEEEEEEEcccHHHHHHHHHcccccccccccccccccEEEEEcccccccEEEEEEEEEEEEEEEcccccEEEEEEEEcccccccEEEEEEEEEEEEEcccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccHHHHHHHHHHcHHccHHHHcHHHEEEEEEEEcccccccHHHEEEEHHHHHHHHcHHccEEEEEEEEccccHHHHEEEEEEEEEEccccccccccccEEEc
Coil and Loop (DISEMBL)
mgvlrfdkdgsvaaapsRMFKAFVIDshnlfpklLPQAFKSIVYEQGYGEVGSIEVVSTSMQSrvdaldrdnlyckytvfeEDCISDILELIVFQIKFgpyklkkissnasclmk
Flexible Loop (DISEMBL)
mgvlrfdkdgsvaaaPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKfgpyklkkissnasclmk
Low Complexity Region (SEG)
MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK
Disordered region (IsUnstruct)
*****************RMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKI*********
Disordered Region (DISOPRED)
*GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK
Disordered Region (DISEMBL)
********DGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKIS********
Disordered Region (DISPRO)
*GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLK***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
O50001	160	Major allergen Pru ar 1 O	N/A	no	0.852	0.612	0.371	4e-15
P43211	159	Major allergen Mal d 1 OS	N/A	no	0.852	0.616	0.342	1e-12
O24248	160	Major allergen Pru av 1 O	N/A	no	0.852	0.612	0.333	1e-12
O49065	157	Root allergen protein OS=	N/A	no	0.852	0.624	0.383	1e-12
P17642	155	Pathogenesis-related prot	N/A	no	0.930	0.690	0.352	2e-12
P43178	160	Major pollen allergen Bet	N/A	no	0.843	0.606	0.355	2e-12
P15494	160	Major pollen allergen Bet	N/A	no	0.843	0.606	0.365	2e-12
P43183	160	Major pollen allergen Bet	N/A	no	0.843	0.606	0.355	2e-12
P17641	155	Pathogenesis-related prot	N/A	no	0.930	0.690	0.352	3e-12
P43179	160	Major pollen allergen Bet	N/A	no	0.843	0.606	0.355	5e-12

>sp|O50001|PRU1_PRUAR Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 7/105 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           MGV  ++ + +    P ++FKAF++D+ NL PK+ P A K     +G G VG+I+ V+  
Sbjct: 1   MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFG 60

Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
                  ++ RVD +D+DNL   YT+ E D +SD++E I + IK 
Sbjct: 61  EGSQYAYVKHRVDGIDKDNLSYSYTLIEGDALSDVIENIAYDIKL 105

Prunus armeniaca (taxid: 36596)

>sp|P43211|MAL11_MALDO Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  F+ + +    PSR+FKAFV+D+ NL PK+ PQA K     +G G  G+I+ ++  
Sbjct: 1   MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFG 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
                  ++ R+D++D  +    YT+ E D ++D +E I ++ K 
Sbjct: 61  EGSQYGYVKHRIDSIDEASYSYSYTLIEGDALTDTIEKISYETKL 105

Malus domestica (taxid: 3750)

>sp|O24248|PRU1_PRUAV Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  ++ + +    P R+FKAFV+D+ NL PK+ PQA K     +G G  G+I+ ++  
Sbjct: 1   MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFG 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
                  ++ ++D++D++N    YT+ E D + D LE I ++ K 
Sbjct: 61  EGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKL 105

Prunus avium (taxid: 42229)

>sp|O49065|RAP_TAROF Root allergen protein OS=Taraxacum officinale PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 9/107 (8%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           M V  F+   S++  PS +FKAFVID   + PK  P+ +KSI   +G G VG+I+ ++  
Sbjct: 1   MAVAEFEITSSLS--PSNIFKAFVIDFDTIAPKAEPETYKSIKTIEGDGGVGTIKSITYS 58

Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGP 100
                TS + +VDA+D +N    YT+FE D +  I+E     +KF P
Sbjct: 59  DGVPFTSSKHKVDAIDSNNFSISYTIFEGDVLMGIIESGTHHLKFLP 105

Taraxacum officinale (taxid: 50225)

>sp|P17642|PRS2_SOLTU Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 12/119 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  +  + +   AP+R+FKA V+DS NL PKL+PQ  K+I  E G G +  +  V  S
Sbjct: 1   MGVTSYTHETTTPIAPTRLFKALVVDSDNLIPKLMPQV-KNIEAE-GDGSIKKMNFVEGS 58

Query: 61  ----MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115
               ++ ++  +D  NL  KY++ E D + D LE I + +KF      +   N  C+ K
Sbjct: 59  PIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKF------EAHGNGGCVCK 111

Solanum tuberosum (taxid: 4113)

>sp|P43178|BEV1E_BETPN Major pollen allergen Bet v 1-E OS=Betula pendula GN=BETV1E PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           MGV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S  
Sbjct: 1   MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFP 60

Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                  ++ RVD +D  N    Y+V E   + D LE I  +IK
Sbjct: 61  EGIPFKYVKGRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIK 104

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P15494|BEV1A_BETPN Major pollen allergen Bet v 1-A OS=Betula pendula GN=BETVIA PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           MGV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S  
Sbjct: 1   MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFP 60

Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                  ++ RVD +D  N    Y+V E   I D LE I  +IK
Sbjct: 61  EGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 104

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43183|BEV1J_BETPN Major pollen allergen Bet v 1-J OS=Betula pendula GN=BETV1J PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           MGV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S  
Sbjct: 1   MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFP 60

Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                  ++ RVD +D  N    Y+V E   + D LE I  +IK
Sbjct: 61  EGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIK 104

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P17641|PRS1_SOLTU Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 12/119 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  +  + +   AP+R+FKA V+DS NL PKL+PQ  K+I  E G G +  +  V  S
Sbjct: 1   MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQV-KNIEAE-GDGSIKKMTFVEGS 58

Query: 61  ----MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115
               ++ ++  +D  NL  KY++ E D + D LE I + +KF      +   N  C+ K
Sbjct: 59  PIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKF------EAHGNGGCVCK 111

Solanum tuberosum (taxid: 4113)

>sp|P43179|BEV1F_BETPN Major pollen allergen Bet v 1-F/I OS=Betula pendula GN=BETV1F PE=1 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           MGV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S  
Sbjct: 1   MGVFNYEIEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFP 60

Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                  ++ RVD +D  N    Y+V E   + D LE I  +IK
Sbjct: 61  EGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIK 104

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
351726706	160	uncharacterized protein LOC100500506 [Gl	0.947	0.681	0.450	7e-21
351727078	160	uncharacterized protein LOC100527307 [Gl	0.947	0.681	0.442	9e-20
388501186	160	unknown [Lotus japonicus]	0.947	0.681	0.442	1e-19
225431834	161	PREDICTED: major allergen Pru ar 1 [Viti	1.0	0.714	0.422	2e-19
351722332	160	uncharacterized protein LOC100306656 [Gl	0.947	0.681	0.434	5e-19
357478849	160	Pathogenesis-related protein [Medicago t	0.947	0.681	0.418	6e-18
388514607	160	unknown [Lotus japonicus]	0.852	0.612	0.447	7e-18
388509642	160	unknown [Medicago truncatula]	0.947	0.681	0.418	7e-18
288557890	154	pathogenesis-related protein 10.9 [Vitis	0.913	0.681	0.424	3e-17
224130342	160	predicted protein [Populus trichocarpa]	0.921	0.662	0.394	8e-17

>gi|351726706|ref|NP_001235344.1| uncharacterized protein LOC100500506 [Glycine max] gi|255630496|gb|ACU15606.1| unknown [Glycine max]

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 13/122 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  F ++ S + APSRMFKA ++DS NL PKLLPQ  K +   QG GE GSIE V+ +
Sbjct: 1   MGVTTFTQEYSSSVAPSRMFKALIVDSRNLLPKLLPQFVKDVNVTQGDGEAGSIEQVNFN 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCL 113
                  ++ R+D LD+DNL CKYT+ E D + D L+ I +++KF      + +S+  CL
Sbjct: 61  EASPFKYLKHRIDVLDKDNLVCKYTMIEGDPLGDKLDSIGYEVKF------EATSDGGCL 114

Query: 114 MK 115
            K
Sbjct: 115 CK 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727078|ref|NP_001237916.1| uncharacterized protein LOC100527307 [Glycine max] gi|255632051|gb|ACU16378.1| unknown [Glycine max]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 13/122 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MG+  F ++ S + APS MFKA ++DS NL PKLLPQ  K +   QG GE GSIE V+ +
Sbjct: 1   MGITTFTQEYSSSVAPSPMFKALIVDSRNLLPKLLPQFVKDVNVIQGDGEAGSIEQVNFN 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCL 113
                  ++ R+D LD+DNL CKYT+ E D + D LE I +++KF      + +S+  CL
Sbjct: 61  EDNPFKYLKHRIDVLDKDNLVCKYTMIEGDPLGDKLESIGYEVKF------EATSDGGCL 114

Query: 114 MK 115
            K
Sbjct: 115 CK 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501186|gb|AFK38659.1| unknown [Lotus japonicus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 74/122 (60%), Gaps = 13/122 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  F  + S + APSRMFKA +IDS NL PKLLPQ  K +   QG GE GSIE V+ +
Sbjct: 1   MGVTTFTHEFSSSIAPSRMFKALIIDSKNLIPKLLPQFVKDVQVIQGEGEAGSIEQVNFN 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCL 113
                  ++ R+D +D++N  CKYT+ E D + D LE I +++KF      + +S+  CL
Sbjct: 61  EASPFKYLKQRIDEVDKENFICKYTMIEGDPLGDKLESIAYEVKF------EATSDGGCL 114

Query: 114 MK 115
            K
Sbjct: 115 CK 116

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431834|ref|XP_002271360.1| PREDICTED: major allergen Pru ar 1 [Vitis vinifera] gi|147853969|emb|CAN79555.1| hypothetical protein VITISV_025729 [Vitis vinifera] gi|296083306|emb|CBI22942.3| unnamed protein product [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 73/123 (59%), Gaps = 8/123 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           MGV R  +  +    P RMFKA ++DSHNL PKL+  + KSI + +G GEVGSI+ ++  
Sbjct: 1   MGVTRLSQKYATHVTPGRMFKALILDSHNLCPKLMFSSIKSIEFLEGEGEVGSIKQINFT 60

Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDC-ISDILELIVFQIKFGPYKLKKISSNASC 112
                T M+ R+DALD++ L C YT+FE D  I D +E I + +KF PY       N + 
Sbjct: 61  EASPLTYMKHRIDALDKEKLTCTYTMFETDALIMDKIEYITYDVKFEPYGFGGCVCNLTS 120

Query: 113 LMK 115
           + K
Sbjct: 121 VYK 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722332|ref|NP_001238264.1| uncharacterized protein LOC100306656 [Glycine max] gi|255629199|gb|ACU14944.1| unknown [Glycine max]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 13/122 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MG   F  D S   APSRMFKA + DS  L PKLLPQ  K +   QG GE GSIE V+ +
Sbjct: 1   MGATTFTHDYSSPVAPSRMFKALITDSRTLLPKLLPQIIKEVNLIQGDGEAGSIEQVNFA 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCL 113
                  ++ R+D +D+DN  CKYT+ E D + D LE I +++KF      + +S+  CL
Sbjct: 61  EAFPFKYVKHRIDEVDKDNFVCKYTMIEGDPLEDKLESIAYEVKF------EATSDGGCL 114

Query: 114 MK 115
            K
Sbjct: 115 CK 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478849|ref|XP_003609710.1| Pathogenesis-related protein [Medicago truncatula] gi|355510765|gb|AES91907.1| Pathogenesis-related protein [Medicago truncatula]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 13/122 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  F  + S   APSRMF A +IDS NL PKLLPQ  K +   +G G  GSIE V+ +
Sbjct: 1   MGVTTFTHEYSSTVAPSRMFTALIIDSRNLIPKLLPQFVKDVNIIEGDGGAGSIEQVNFN 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCL 113
                  ++ ++D LD++NL CKYT+ E D + D LE I +++KF      + +++  CL
Sbjct: 61  EGNPFKYLKQKIDVLDKENLICKYTMIEGDPLGDKLESIAYEVKF------EATNDGGCL 114

Query: 114 MK 115
            K
Sbjct: 115 CK 116

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514607|gb|AFK45365.1| unknown [Lotus japonicus]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 7/105 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  F  D S   APSRMFKA + DS  L PKLLPQ  K +   QG GE GSIE ++ +
Sbjct: 1   MGVTTFTHDFSTPVAPSRMFKALITDSRALLPKLLPQFIKDVTLIQGNGEAGSIEQINFA 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
                  ++ R++ +D +NL C YT+ E D + D LE I +++KF
Sbjct: 61  EGSPFKYLKHRIEMVDNNNLLCNYTMIEGDPLGDKLESIAYEVKF 105

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509642|gb|AFK42887.1| unknown [Medicago truncatula]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 13/122 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  F  + S   APSRMF A +IDS NL PKLLPQ  K +   +G G  GSIE V+ +
Sbjct: 1   MGVTTFTHEYSSTVAPSRMFTALIIDSRNLIPKLLPQFVKDVNIIEGDGGAGSIEQVNFN 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCL 113
                  ++ ++D LD++NL CKYT+ E D + D LE I +++KF      + +++  CL
Sbjct: 61  EGSPFKYLKQKIDVLDKENLICKYTMIEGDPLGDKLESIAYEVKF------EATNDGGCL 114

Query: 114 MK 115
            K
Sbjct: 115 CK 116

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|288557890|emb|CBJ49381.1| pathogenesis-related protein 10.9 [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 8/113 (7%)

Query: 11  SVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQS 63
           +    P RMFKA ++DSHNL PKL+  + KSI + +G GEVGSI+ ++       T M+ 
Sbjct: 4   ATHVTPGRMFKALILDSHNLCPKLMFSSIKSIEFLEGEGEVGSIKQINFTEASPLTYMKH 63

Query: 64  RVDALDRDNLYCKYTVFEEDC-ISDILELIVFQIKFGPYKLKKISSNASCLMK 115
           R+DALD++ L C YT+FE D  I D +E I + +KF PY       N + + K
Sbjct: 64  RIDALDKEKLTCTYTMFETDALIMDKIEYITYDVKFEPYGFGGCVCNLTSVYK 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130342|ref|XP_002328585.1| predicted protein [Populus trichocarpa] gi|222838567|gb|EEE76932.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 13/119 (10%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  + ++ +   +P+RMFKA ++DS+NL PKLLPQ  KS+    G G  GSIE V+ +
Sbjct: 1   MGVASYTQEFTCPISPARMFKALILDSNNLIPKLLPQIVKSVDLIHGDGGAGSIEQVNFT 60

Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASC 112
                  ++ R+D LDR NL CKYT+ E D + + LE I ++++F      ++ S+  C
Sbjct: 61  EGTDIKYVKHRIDELDRVNLVCKYTMIEGDSLGEKLESIAYEVRF------EVGSDGGC 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PR10.9	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_64, whole genome shotgun sequence); (161 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033091001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (357 aa)							•		0.483
	GSVIVG00033064001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (288 aa)							•		0.483

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	4e-21
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	1e-07

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score = 81.5 bits (202), Expect = 4e-21
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 8/94 (8%)

Query: 12  VAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSR 64
           +     +++KAFV+DSH L PKL P   KS+   +G G  GSI++++         ++ R
Sbjct: 9   LKVPAEKLWKAFVLDSHLLPPKLPPV-IKSVELLEGDGGPGSIKLITFGPGGKVKYVKER 67

Query: 65  VDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
           +DA+D +N   KYTV E D + D  +    +IKF
Sbjct: 68  IDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKF 101

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 16/112 (14%)

Query: 12  VAAAPSRMFKAFVIDSHNLFPKLLPQAFKSI-VYEQGYGEVGSIEVVS-------TSMQS 63
           +  +  + +KAF     +L PK +P   + + V+E  +G  GSI+  +         ++ 
Sbjct: 11  IKVSADKFYKAFK-LEDHLIPKAIPHHIQGVEVHEGEWGTGGSIKKWTYTEDGKPKVVKE 69

Query: 64  RVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115
           R++A D  N    Y+V E D + D    I   ++  P       SN   ++K
Sbjct: 70  RIEADDEKNKTITYSVLEGDVLEDYKSFITT-LQVIP------KSNGGSIVK 114

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	99.95
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.48
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.26
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.19
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.0
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	98.96
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	98.94
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	98.9
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	98.89
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	98.74
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	98.68
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	98.65
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	98.65
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	98.6
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	98.53
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	98.49
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	98.46
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	98.42
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	98.41
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	98.35
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.28
PRK10724	158	hypothetical protein; Provisional	98.2
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	97.82
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	97.8
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	97.73
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	97.67
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	97.5
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	97.46
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	97.44
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	97.35
COG5637	217	Predicted integral membrane protein [Function unkn	97.21
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	97.16
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	97.16
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.13
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	97.1
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	97.07
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	96.89
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	96.88
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	96.52
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	96.17
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	95.8
COG3832	149	Uncharacterized conserved protein [Function unknow	95.22
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	94.32
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	93.16
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	91.49
cd08874	205	START_STARD9-like C-terminal START domain of mamma	90.69
cd08914	236	START_STARD15-like Lipid-binding START domain of m	82.64
cd08906	209	START_STARD3-like Cholesterol-binding START domain	81.85

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=9.1e-36  Score=213.92  Aligned_cols=107  Identities=31%  Similarity=0.512  Sum_probs=99.7

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccc-cEEEEc-------eeeeEEEeeecCCc
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVG-SIEVVS-------TSMQSRVDALDRDN   72 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~G-sir~~t-------~~~kEri~~vDe~~   72 (115)
                      |++++++.|+++++||+|+|++| ++.++++||++|+.|+|+|++||||++| |||.|+       .++|||++.+|++|
T Consensus         1 m~~~~~~~E~~~~~~a~k~~ka~-~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~   79 (151)
T PF00407_consen    1 MGVGKLEVEVEVKVSADKLWKAF-KSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN   79 (151)
T ss_dssp             SCEEEEEEEEEESS-HHHHHHHH-TTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred             CCcEEEEEEEEecCCHHHHHHHH-hcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence            99999999999999999999997 5588999999999999999999999887 999999       68999999999999


Q ss_pred             cEEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           73 LYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        73 ~~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++++|++||||++ ..|++|+.++++.|+      ++|||++|
T Consensus        80 ~~~~y~viEGd~l-~~~~~~~~~~~~~~~------~~g~~v~k  115 (151)
T PF00407_consen   80 KTITYTVIEGDVL-GDYKSFKSTIQKIPK------GDGGCVVK  115 (151)
T ss_dssp             TEEEEEEEEETTG-TTTEEEEEEEEEEEE------TTSCEEEE
T ss_pred             cEEEEEEEecccc-ccEEEEEEEEEecCC------CCCceEEE
Confidence            9999999999988 689999999999999      89999986

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=99.95  E-value=1.2e-27  Score=170.19  Aligned_cols=104  Identities=31%  Similarity=0.539  Sum_probs=93.1

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccc-cccccceeeEEEEecCCccccEEEEc---e----eeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFP-KLLPQAFKSIVYEQGYGEVGSIEVVS---T----SMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~p-k~~P~~v~sve~~eGdg~~Gsir~~t---~----~~kEri~~vDe~~~~~   75 (115)
                      ++++.|++|+|||+++|++ ++|+.+.+| .|+| .|++|++++|||++||||.|+   +    .++|||+.+|+++|++
T Consensus         1 ~~~~~e~~i~a~ad~vW~~-~~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~   78 (148)
T cd07816           1 GTLEHEVELKVPAEKLWKA-FVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY   78 (148)
T ss_pred             CcEEEEEEecCCHHHHHHH-HhcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence            3689999999999999999 589885345 4555 899999999999999999999   3    8999999999999999


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      +|+++||+++..+|++|+++++|.|.      ++++|+++
T Consensus        79 ~y~vveg~~~~~~~~~y~~t~~v~~~------~~~~t~v~  112 (148)
T cd07816          79 KYTVIEGDVLKDGYKSYKVEIKFVPK------GDGGCVVK  112 (148)
T ss_pred             EEEEEecccccCceEEEEEEEEEEEC------CCCCEEEE
Confidence            99999999875589999999999998      88899874

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.48  E-value=6.4e-13  Score=89.94  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=83.6

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      .++.+++|++|++++|++ +.|+.++ |+|.|. ++++++++++.++|+++.+.    ..+++++..+|+.+..+.|++.
T Consensus         2 ~i~~~~~i~a~~~~V~~~-l~d~~~~-~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~~~~~~~~~i~~~~~   78 (140)
T cd07821           2 KVTVSVTIDAPADKVWAL-LSDFGGL-HKWHPA-VASCELEGGGPGVGAVRTVTLKDGGTVRERLLALDDAERRYSYRIV   78 (140)
T ss_pred             cEEEEEEECCCHHHHHHH-HhCcCch-hhhccC-cceEEeecCCCCCCeEEEEEeCCCCEEEEEehhcCccCCEEEEEec
Confidence            478899999999999999 5899985 999995 88999988765789998887    4678999999998889999999


Q ss_pred             ecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           81 EEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        81 eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      +|+   .++.++..+++|+|.      ++|||.++
T Consensus        79 ~~~---~~~~~~~~~~~~~~~------~~~~t~v~  104 (140)
T cd07821          79 EGP---LPVKNYVATIRVTPE------GDGGTRVT  104 (140)
T ss_pred             CCC---CCcccceEEEEEEEC------CCCccEEE
Confidence            874   346678889999998      77688763

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.26  E-value=4.4e-10  Score=75.97  Aligned_cols=95  Identities=17%  Similarity=0.285  Sum_probs=75.1

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~v   79 (115)
                      .+++.++.|++||+++|+. +.|+.++ |+|.| .+.++++++++| +|..+.++    ..+.+++..+|++++.+.|++
T Consensus         2 ~~~~~~~~v~a~~e~V~~~-l~d~~~~-~~w~~-~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~   77 (139)
T PF10604_consen    2 FKVEVSIEVPAPPEAVWDL-LSDPENW-PRWWP-GVKSVELLSGGG-PGTERTVRVAGRGTVREEITEYDPEPRRITWRF   77 (139)
T ss_dssp             EEEEEEEEESS-HHHHHHH-HTTTTGG-GGTST-TEEEEEEEEECS-TEEEEEEEECSCSEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEEEECCCHHHHHHH-HhChhhh-hhhhh-ceEEEEEccccc-cceeEEEEeccccceeEEEEEecCCCcEEEEEE
Confidence            5788999999999999999 6999985 99999 489999887444 35444444    468999999998899999999


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .     ..++..+..+++++|.      ++ ||.+
T Consensus        78 ~-----~~~~~~~~~~~~~~~~------~~-gt~v  100 (139)
T PF10604_consen   78 V-----PSGFTNGTGRWRFEPV------GD-GTRV  100 (139)
T ss_dssp             E-----SSSSCEEEEEEEEEEE------TT-TEEE
T ss_pred             E-----ecceeEEEEEEEEEEc------CC-CEEE
Confidence            6     2345677888999998      54 4765

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.19  E-value=4.1e-10  Score=77.56  Aligned_cols=94  Identities=15%  Similarity=0.246  Sum_probs=70.5

Q ss_pred             EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-cc-----ccEEEEc----eeeeEEEeeecCCccEEE
Q 044934            7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EV-----GSIEVVS----TSMQSRVDALDRDNLYCK   76 (115)
Q Consensus         7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~-----Gsir~~t----~~~kEri~~vDe~~~~~~   76 (115)
                      ..++.|++|++++|++ +.|+.++ |+|+|+ +++++++++++ +.     |..+.+.    ..+..++...|+.++.+.
T Consensus         2 ~~~~~i~a~~~~Vw~~-l~D~~~~-~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~   78 (144)
T cd08866           2 VARVRVPAPPETVWAV-LTDYDNL-AEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELD   78 (144)
T ss_pred             eEEEEECCCHHHHHHH-HhChhhH-HhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEE
Confidence            5789999999999999 6999995 999995 99999987754 21     1121111    334455666666688999


Q ss_pred             EEEEecCccCcceEEEEEEEEEEecccccccCC-Cceee
Q 044934           77 YTVFEEDCISDILELIVFQIKFGPYKLKKISSN-ASCLM  114 (115)
Q Consensus        77 y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~-gg~~v  114 (115)
                      |++++|+     +..+..+.+++|.      ++ |||.+
T Consensus        79 ~~~~~g~-----~~~~~g~w~~~~~------~~~~~t~v  106 (144)
T cd08866          79 FEMVEGD-----FKRFEGSWRLEPL------ADGGGTLL  106 (144)
T ss_pred             EEEcCCc-----hhceEEEEEEEEC------CCCCeEEE
Confidence            9999875     5677888999998      77 67865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.00  E-value=1.7e-08  Score=68.43  Aligned_cols=95  Identities=12%  Similarity=0.129  Sum_probs=67.8

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc---e----eeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS---T----SMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t---~----~~kEri~~vDe~~~~~   75 (115)
                      .+++..+.|++|++++|++ +.|+.++ |+|+|. +.++++++++ ++.+....++   .    .+.-+++ .++ ++.+
T Consensus         2 ~~v~~s~~i~ap~e~V~~~-l~D~~~~-~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i   76 (140)
T cd07819           2 IKVSREFEIEAPPAAVMDV-LADVEAY-PEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV   76 (140)
T ss_pred             ceEEEEEEEeCCHHHHHHH-HhChhhh-hhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence            4789999999999999999 6999995 999996 9999987653 3333333333   1    1122222 223 6779


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +|+..+|.    ....+..+.+++|.      ++ ||.+
T Consensus        77 ~~~~~~~~----~~~~~~~~~~~~~~------~~-~t~v  104 (140)
T cd07819          77 SWTLVEGE----GNRSQEGSYTLTPK------GD-GTRV  104 (140)
T ss_pred             EEEEeccc----ceeEEEEEEEEEEC------CC-CEEE
Confidence            99998875    36667788999998      55 6765

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=98.96  E-value=1.2e-08  Score=70.12  Aligned_cols=97  Identities=14%  Similarity=0.193  Sum_probs=68.7

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc------eeeeEEEeeecCCccEEEEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS------TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t------~~~kEri~~vDe~~~~~~y~v   79 (115)
                      ++.+++|++|++++|++ +.|+.++ |+|+|.  .+++.++++++...++.|.      ..-.+....+|++.+.+.|..
T Consensus         1 ~~~s~~i~ap~~~V~~~-l~D~~~~-p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~   76 (142)
T cd08861           1 VEHSVTVAAPAEDVYDL-LADAERW-PEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQ   76 (142)
T ss_pred             CeEEEEEcCCHHHHHHH-HHhHHhh-hccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEE
Confidence            36789999999999999 6999995 999996  5666665543222455444      122233445788888899999


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      +++..   .+..+.....|+|.      ++++|.|+
T Consensus        77 ~~~~~---~~~~~~g~w~~~~~------~~~~t~Vt  103 (142)
T cd08861          77 EEPPP---PVASMSGEWRFEPL------GGGGTRVT  103 (142)
T ss_pred             eeCCC---ChhhheeEEEEEEC------CCCcEEEE
Confidence            88543   25666777888998      66778763

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.94  E-value=2.3e-08  Score=67.26  Aligned_cols=92  Identities=10%  Similarity=0.053  Sum_probs=69.1

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc-------eeeeEEEeeecCCccEEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS-------TSMQSRVDALDRDNLYCKY   77 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t-------~~~kEri~~vDe~~~~~~y   77 (115)
                      ++.++.|++|++++|+. +.|+.++ |+|.|. +.+++.+.++ .++|+...+.       -.+++++..+|+ ++.+.|
T Consensus         1 ~~~~~~i~ap~~~Vw~~-l~d~~~~-~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~   76 (140)
T cd08865           1 VEESIVIERPVEEVFAY-LADFENA-PEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVF   76 (140)
T ss_pred             CceEEEEcCCHHHHHHH-HHCccch-hhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEE
Confidence            35789999999999999 5999995 999996 6788877554 3678887765       246888888884 578888


Q ss_pred             EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ...+|. +     .+..+..++|.      ++ ||.+
T Consensus        77 ~~~~~~-~-----~~~~~~~~~~~------~~-~t~v  100 (140)
T cd08865          77 RGSSGP-F-----PYEDTYTFEPV------GG-GTRV  100 (140)
T ss_pred             EecCCC-c-----ceEEEEEEEEc------CC-ceEE
Confidence            887653 2     24667888887      44 5755

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=98.90  E-value=1.2e-08  Score=70.26  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=70.2

Q ss_pred             EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEEEE
Q 044934            7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~v   79 (115)
                      +.++.|++|++.+|+. +.|..++ |+|+|+ +++++++++++ .+....++       ..+..++. +|. ++.+++..
T Consensus         2 ~~s~~i~ap~~~v~~~-i~D~~~~-~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~   75 (138)
T cd07813           2 SKSRLVPYSAEQMFDL-VADVERY-PEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL   75 (138)
T ss_pred             eEEEEcCCCHHHHHHH-HHHHHhh-hhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence            6789999999999999 6999995 999995 99999998866 33333343       33445555 666 66789998


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|.     ++.+..+.+++|.      ++|+|.|+
T Consensus        76 ~~g~-----~~~~~g~w~~~p~------~~~~T~v~  100 (138)
T cd07813          76 VDGP-----FKHLEGEWRFKPL------GENACKVE  100 (138)
T ss_pred             cCCC-----hhhceeEEEEEEC------CCCCEEEE
Confidence            8883     5667788999998      77888763

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=98.89  E-value=7.1e-08  Score=65.38  Aligned_cols=94  Identities=18%  Similarity=0.206  Sum_probs=68.9

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      +++.++.|+||++++|++ +.|+.++ |+|+|+ +++++..++..++|+...++    ..+..++..+++.+ .+.++..
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~-~~d~~~~-~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~p~~-~~~~~~~   77 (138)
T cd08862           2 KFEATIVIDAPPERVWAV-LTDVENW-PAWTPS-VETVRLEGPPPAVGSSFKMKPPGLVRSTFTVTELRPGH-SFTWTGP   77 (138)
T ss_pred             EEEEEEEEcCCHHHHHHH-HHhhhhc-ccccCc-ceEEEEecCCCCCCcEEEEecCCCCceEEEEEEecCCC-EEEEEec
Confidence            578899999999999999 5999985 999995 89999876542677766665    45667778788654 4677653


Q ss_pred             ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           81 EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        81 eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      . +     ......+++++|.      ++|||.+
T Consensus        78 ~-~-----~~~~~~~~~~~~~------~~~~t~l   99 (138)
T cd08862          78 A-P-----GISAVHRHEFEAK------PDGGVRV   99 (138)
T ss_pred             C-C-----CEEEEEEEEEEEc------CCCcEEE
Confidence            2 2     1244568888887      5567754

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.74  E-value=4.3e-07  Score=61.19  Aligned_cols=94  Identities=13%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCccEEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNLYCKY   77 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~~~~y   77 (115)
                      ++.++.|++|++++|++ +.|+.++ |+|+|. +..++...  .++|+...+.        ..+.+++..+|+. +.+.|
T Consensus         2 v~~~~~i~ap~~~Vw~~-~~d~~~~-~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~   75 (141)
T cd07822           2 ISTEIEINAPPEKVWEV-LTDFPSY-PEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW   75 (141)
T ss_pred             eEEEEEecCCHHHHHHH-Hhccccc-cccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence            57889999999999999 5999885 999995 55555331  4566666655        2456788888874 57788


Q ss_pred             EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +...|+..   .-....+..|+|.      +++||.+
T Consensus        76 ~~~~~~~~---~~~~~~~~~~~~~------~~~~T~~  103 (141)
T cd07822          76 RGGLPFPG---LLDGEHSFELEPL------GDGGTRF  103 (141)
T ss_pred             EecCCCCc---EeeEEEEEEEEEc------CCCcEEE
Confidence            88766532   2345567888997      6778865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=98.68  E-value=3.9e-07  Score=59.32  Aligned_cols=94  Identities=15%  Similarity=0.167  Sum_probs=70.0

Q ss_pred             EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc------eeeeEEEeeecCCccEEEEEE
Q 044934            7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS------TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t------~~~kEri~~vDe~~~~~~y~v   79 (115)
                      +.++.|++|++++|++ +.|+.+ +|+|.|. +.++++.++.+ ..|....+.      .....++..+++ +..++|+.
T Consensus         2 ~~~~~i~a~~~~v~~~-l~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~   77 (141)
T cd07812           2 EASIEIPAPPEAVWDL-LSDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVTEVDP-PRPGRFRV   77 (141)
T ss_pred             cEEEEeCCCHHHHHHH-HhChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCCccccceEEEEEecC-CCceEEEE
Confidence            5688999999999999 599888 5999996 78888776643 555554443      346788887777 66888998


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .+++..    ..+..+.++.+.      +++||.+
T Consensus        78 ~~~~~~----~~~~~~~~~~~~------~~~~t~v  102 (141)
T cd07812          78 TGGGGG----VDGTGEWRLEPE------GDGGTRV  102 (141)
T ss_pred             ecCCCC----cceeEEEEEEEC------CCCcEEE
Confidence            876643    567777888887      4436654

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.65  E-value=3.9e-07  Score=62.96  Aligned_cols=93  Identities=12%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-C--ccccEEEEc----e---eeeEEEeeecCCccEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-G--EVGSIEVVS----T---SMQSRVDALDRDNLYC   75 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g--~~Gsir~~t----~---~~kEri~~vDe~~~~~   75 (115)
                      ++.++.|++|++++|+. +.|..++ |+|+|+ +.++++++.+ |  .+|+.-.|.    .   ..+-++..+++ ++.+
T Consensus         1 ~~~s~~I~ap~e~V~~~-~~d~~~~-~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f   76 (137)
T cd07820           1 LERSTVIPAPIEEVFDF-HSRPDNL-ERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRF   76 (137)
T ss_pred             CeEEEEcCCCHHHHHHH-HcCcchH-HhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeE
Confidence            46789999999999999 6999995 999996 7889988543 2  467877776    2   45666666554 4568


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .+..+.|.     +.++..+..|+|.      ++ ||.+
T Consensus        77 ~~~~~~G~-----~~~w~h~~~f~~~------~~-gT~v  103 (137)
T cd07820          77 VDEQVSGP-----FRSWRHTHRFEAI------GG-GTLM  103 (137)
T ss_pred             EEEeccCC-----chhCEEEEEEEEC------CC-ceEE
Confidence            78877653     4566777888887      44 6765

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.65  E-value=1e-06  Score=60.96  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=68.0

Q ss_pred             EEEEEEEeccCHHHHHHHHhccccccccccccccee--eEEE--EecCCccccEEEEc--e---eeeEEEeeecCCccEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFK--SIVY--EQGYGEVGSIEVVS--T---SMQSRVDALDRDNLYC   75 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~--sve~--~eGdg~~Gsir~~t--~---~~kEri~~vDe~~~~~   75 (115)
                      +++.++.|++|++++|++ +.|+.++ |+|+|....  .++.  .+++.++|+...|+  .   ....++..+++ ++.+
T Consensus         3 ~~~~s~~I~ap~e~V~~~-i~D~~~~-~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~p-~~~i   79 (150)
T cd07818           3 RVERSIVINAPPEEVFPY-VNDLKNW-PEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEMEITESVP-NERI   79 (150)
T ss_pred             EEEEEEEEeCCHHHHHHH-HhCcccC-cccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEEEEEecCC-CcEE
Confidence            678899999999999999 6999995 999995322  1222  12344788877777  2   23455666654 5678


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|++..++++ .  -....++.|+|.       +|||.+
T Consensus        80 ~~~~~~~~~~-~--~~~~~~~~~~~~-------~~gT~v  108 (150)
T cd07818          80 EYELRFIKPF-E--ATNDVEFTLEPV-------GGGTKV  108 (150)
T ss_pred             EEEEEecCCc-c--ccceEEEEEEEc-------CCceEE
Confidence            8999865543 1  356788999997       457865

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.60  E-value=9.6e-07  Score=61.60  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=63.7

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEe-cC-CccccEEEEc--------eeeeEEEeeecCCccE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQ-GY-GEVGSIEVVS--------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~e-Gd-g~~Gsir~~t--------~~~kEri~~vDe~~~~   74 (115)
                      .++....|++|++++|++ +.|+.++ |+|.|. ++++++++ |+ .++|+.-+++        ..+.-++..+ +.++.
T Consensus         2 ~~~~~~~i~ap~e~Vw~~-~tD~~~~-~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~   77 (146)
T cd07824           2 RFHTVWRIPAPPEAVWDV-LVDAESW-PDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSL   77 (146)
T ss_pred             cceEEEEecCCHHHHHHH-HhChhhc-chhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcE
Confidence            367788999999999999 6999984 999995 89999887 33 3777765432        1233444444 35667


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.++. +|+..  .    ..+..|+|.       ++||.+
T Consensus        78 ~~~~~-~g~~~--~----~~~~~~~~~-------~~gt~v  103 (146)
T cd07824          78 LEVRA-SGDLE--G----VGRWTLAPD-------GSGTVV  103 (146)
T ss_pred             EEEEE-EEeee--E----EEEEEEEEc-------CCCEEE
Confidence            78874 66532  1    456778887       446866

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=98.53  E-value=1.5e-06  Score=58.69  Aligned_cols=94  Identities=11%  Similarity=0.060  Sum_probs=64.3

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~   78 (115)
                      ++.+++|+||++++|++ +.|+.++ |+|+|. +..++.....|  |+.+...       ..+..++..+|+. +.+.|+
T Consensus         2 i~~s~~I~a~~~~Vw~~-l~d~~~~-~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~   75 (139)
T cd07814           2 ITIEREFDAPPELVWRA-LTDPELL-AQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT   75 (139)
T ss_pred             eEEEEEecCCHHHHHHH-cCCHHHH-HhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence            67889999999999999 5998884 999996 22222111122  5665543       3567888888866 578899


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ...++.  ...-....+++|.|.      + +||.+
T Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~------~-~~T~v  102 (139)
T cd07814          76 WAFSDE--TPGPETTVTVTLEET------G-GGTRL  102 (139)
T ss_pred             ecccCC--CCCCceEEEEEEEEC------C-CCEEE
Confidence            887753  112345677888898      5 45755

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.49  E-value=2.7e-06  Score=58.42  Aligned_cols=95  Identities=12%  Similarity=0.105  Sum_probs=62.3

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC--CccccEEEEc-------eeeeEEEeeecCCccEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY--GEVGSIEVVS-------TSMQSRVDALDRDNLYCK   76 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd--g~~Gsir~~t-------~~~kEri~~vDe~~~~~~   76 (115)
                      ++.++.|+||++++|++ +.|+.+ +|+|.|.... .....++  -.+|+...+.       ..+..++..+|+.+ .+.
T Consensus         2 i~~~~~i~ap~e~Vw~~-l~d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~~-~l~   77 (144)
T cd07825           2 VSVSRTVDAPAEAVFAV-LADPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEENR-LIA   77 (144)
T ss_pred             eEEEEEEeCCHHHHHHH-HhCccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECCCC-EEE
Confidence            57899999999999999 599988 4999985332 2222343  3678776665       33445567677755 477


Q ss_pred             EEEE-ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           77 YTVF-EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        77 y~vi-eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      |+.. .+..    ......++.++|.      ++|+|.+
T Consensus        78 ~~~~~~~~~----~~~~~~~~~l~~~------~~g~T~v  106 (144)
T cd07825          78 WRPGPAGQE----PGGHRWRWELEPI------GPGRTRV  106 (144)
T ss_pred             EEccCCCCC----CCceeEEEEEEEC------CCCcEEE
Confidence            8753 2222    1224456778887      5667765

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.46  E-value=1.3e-06  Score=59.19  Aligned_cols=93  Identities=12%  Similarity=0.095  Sum_probs=61.4

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEE-c--eeeeEEEeeecCCccEEEEEEEec
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV-S--TSMQSRVDALDRDNLYCKYTVFEE   82 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~-t--~~~kEri~~vDe~~~~~~y~vieG   82 (115)
                      ++.++.|++|++++|++ +.|+.++ |+|.|. +++++++.|.+.--.++.. .  ..+..++..+++ ++.+.|....|
T Consensus         2 v~~~i~I~ap~e~V~~~-~~D~~~~-~~w~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~-~~~i~~~~~~~   77 (139)
T cd07817           2 VEKSITVNVPVEEVYDF-WRDFENL-PRFMSH-VESVEQLDDTRSHWKAKGPAGLSVEWDAEITEQVP-NERIAWRSVEG   77 (139)
T ss_pred             eeEEEEeCCCHHHHHHH-HhChhhh-HHHhhh-hcEEEEcCCCceEEEEecCCCCcEEEEEEEeccCC-CCEEEEEECCC
Confidence            67899999999999999 5999994 999995 8889887552211111111 1  244555554444 44588887664


Q ss_pred             CccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           83 DCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        83 ~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .     + .+..++.|+|.      ++++|.+
T Consensus        78 ~-----~-~~~~~~~f~~~------~~~~T~v   97 (139)
T cd07817          78 A-----D-PNAGSVRFRPA------PGRGTRV   97 (139)
T ss_pred             C-----C-CcceEEEEEEC------CCCCeEE
Confidence            3     1 34566778886      5556754

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=98.42  E-value=4.2e-06  Score=56.85  Aligned_cols=97  Identities=12%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccc-cEEEEc--eee--eEEEeeecCCccEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVG-SIEVVS--TSM--QSRVDALDRDNLYCKYT   78 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~G-sir~~t--~~~--kEri~~vDe~~~~~~y~   78 (115)
                      +++.++.+++|++++|++ +.|+.+ +|+|+|+ +++++.++++. ... .++..-  ..+  .-++..+|+. +.+.++
T Consensus         2 ~~~~~~~i~a~~e~v~~~-l~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   77 (144)
T cd05018           2 KISGEFRIPAPPEEVWAA-LNDPEV-LARCIPG-CESLEKIGPNEYEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTIT   77 (144)
T ss_pred             eeeeEEEecCCHHHHHHH-hcCHHH-HHhhccc-hhhccccCCCeEEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEEE
Confidence            578899999999999999 599998 5999996 77888776432 211 111111  122  3344444544 566666


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ....+.  .....+..++.++|.       ++||.+
T Consensus        78 ~~~~~~--~~~~~~~~~~~l~~~-------~~gT~v  104 (144)
T cd05018          78 GEGKGG--AGFVKGTARVTLEPD-------GGGTRL  104 (144)
T ss_pred             EEEcCC--CceEEEEEEEEEEec-------CCcEEE
Confidence            554332  235678888999987       456755

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=98.41  E-value=6.5e-06  Score=58.43  Aligned_cols=96  Identities=14%  Similarity=0.122  Sum_probs=66.7

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-cccc-EEEEc--eeeeEEEe---eecCCccEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGS-IEVVS--TSMQSRVD---ALDRDNLYCKY   77 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gs-ir~~t--~~~kEri~---~vDe~~~~~~y   77 (115)
                      ..+++++|++||+++|+. +.|..++ |.|+|. ++++++++.++ +.|+ +..|.  .-......   .+|...+.+.+
T Consensus         2 ~~~~si~i~a~~~~v~~l-vaDv~~~-P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~   78 (146)
T cd08860           2 RTDNSIVIDAPLDLVWDM-TNDIATW-PDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERTLDPVNRTVRA   78 (146)
T ss_pred             cceeEEEEcCCHHHHHHH-HHhhhhh-hhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEEecCCCcEEEE
Confidence            357899999999999999 7999995 999995 99999988754 5663 22233  11122221   37888888877


Q ss_pred             EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .-.. +   .++.+...+-+|+|.      ++ ||.|
T Consensus        79 ~~~~-~---~p~~~m~~~W~f~~~------~~-gT~V  104 (146)
T cd08860          79 RRVE-T---GPFAYMNIRWEYTEV------PE-GTRM  104 (146)
T ss_pred             EEec-C---CCcceeeeeEEEEEC------CC-CEEE
Confidence            4111 1   237777788888997      45 4765

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=98.35  E-value=7.8e-06  Score=55.24  Aligned_cols=79  Identities=20%  Similarity=0.340  Sum_probs=58.0

Q ss_pred             eccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEEEEEecCc
Q 044934           12 VAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKYTVFEEDC   84 (115)
Q Consensus        12 i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~vieG~~   84 (115)
                      |++||+++|++ +.|..++ |.|+|. ++++++++.++. +..-.+.       .....++....+..  +.+..++|+ 
T Consensus         1 V~ap~~~V~~~-i~D~e~~-~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-   73 (130)
T PF03364_consen    1 VNAPPEEVWSV-ITDYENY-PRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPPER--IRFEQISGP-   73 (130)
T ss_dssp             ESS-HHHHHHH-HTTGGGH-HHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECTTT--EEEESSETT-
T ss_pred             CCCCHHHHHHH-HHHHHHH-HHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEeee--eeeeecCCC-
Confidence            68999999999 6999995 999995 999999988764 3222333       45666766444444  777776664 


Q ss_pred             cCcceEEEEEEEEEEec
Q 044934           85 ISDILELIVFQIKFGPY  101 (115)
Q Consensus        85 l~~~~~s~~~~i~v~p~  101 (115)
                          ++.+..+-++.|.
T Consensus        74 ----~~~~~g~W~~~~~   86 (130)
T PF03364_consen   74 ----FKSFEGSWRFEPL   86 (130)
T ss_dssp             ----EEEEEEEEEEEEE
T ss_pred             ----chhcEEEEEEEEC
Confidence                7888888999998

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.28  E-value=9.8e-06  Score=56.45  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCc-------cccEE-EEceeeeEEEeeecCCccEEEEE
Q 044934            7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGE-------VGSIE-VVSTSMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~-------~Gsir-~~t~~~kEri~~vDe~~~~~~y~   78 (115)
                      +.++++++|++++|++ +.|..++ |.|.|+ +++++..+++.-       .|.++ .++..+  ++..+|++++.+.++
T Consensus         2 ~~~~~v~a~pe~vw~~-l~D~~~~-~~~~pg-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~   76 (146)
T cd07823           2 ENEFTVPAPPDRVWAL-LLDIERV-APCLPG-ASLTEVEGDDEYKGTVKVKLGPISASFKGTA--RLLEDDEAARRAVLE   76 (146)
T ss_pred             CceEEecCCHHHHHHH-hcCHHHH-HhcCCC-ceeccccCCCeEEEEEEEEEccEEEEEEEEE--EEEeccCCCcEEEEE
Confidence            5789999999999999 5998885 899996 888886543321       11221 111222  455556577888777


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .-..+.-...--....++++.|.       +|||.+
T Consensus        77 ~~g~~~~~~g~~~~~~~~~l~~~-------~~gT~v  105 (146)
T cd07823          77 ATGKDARGQGTAEATVTLRLSPA-------GGGTRV  105 (146)
T ss_pred             EEEecCCCcceEEEEEEEEEEec-------CCcEEE
Confidence            54311111111156677788876       456754

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=98.20  E-value=1.6e-05  Score=57.40  Aligned_cols=93  Identities=16%  Similarity=0.311  Sum_probs=68.4

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKY   77 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y   77 (115)
                      .+..++.+++||+++|++ +.|..+ .|+|+|. .+++++++-++. +.+..++       ..+..|+. ++.++ .+.+
T Consensus        16 ~i~~~~~v~~s~~~v~~l-v~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~~   89 (158)
T PRK10724         16 QISRTALVPYSAEQMYQL-VNDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SILM   89 (158)
T ss_pred             eEEEEEEecCCHHHHHHH-HHHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEEE
Confidence            677889999999999999 799998 5999996 778788765432 2233343       45556655 45444 7999


Q ss_pred             EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ++++|+     ++.+...-+|+|.      ++++|.|
T Consensus        90 ~~~~Gp-----F~~l~g~W~f~p~------~~~~t~V  115 (158)
T PRK10724         90 QLVDGP-----FKKLIGGWKFTPL------SQEACRI  115 (158)
T ss_pred             EecCCC-----hhhccceEEEEEC------CCCCEEE
Confidence            999874     5667777888898      6667876

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.82  E-value=0.00018  Score=49.12  Aligned_cols=97  Identities=14%  Similarity=0.223  Sum_probs=55.2

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      +++.++.|+||++++|++| .|+.. +++|.|...  .....|.+..|.++ +.    ....-++..+++.+ .+.|+..
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~-td~~~-~~~W~~~~~--~~~~~~~~~~g~~~-~~~~~~~~~~~~i~~~~p~~-~l~~~~~   75 (145)
T cd08898           2 RIERTILIDAPRERVWRAL-TDPEH-FGQWFGVKL--GPFVVGEGATGEIT-YPGYEHGVFPVTVVEVDPPR-RFSFRWH   75 (145)
T ss_pred             eeEEEEEecCCHHHHHHHh-cChhh-hhhcccccC--CCcccCCcceeEEe-cCCCCccceEEEEEEeCCCc-EEEEEec
Confidence            5788999999999999995 89887 499999632  11111222223332 22    23344566565544 4456653


Q ss_pred             ecC--c-c-CcceEEEEEEEEEEecccccccCCCceee
Q 044934           81 EED--C-I-SDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        81 eG~--~-l-~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .+.  . . ...-.....++.|+|.      + +||.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-~gT~v  106 (145)
T cd08898          76 PPAIDPGEDYSAEPSTLVEFTLEPI------A-GGTLL  106 (145)
T ss_pred             CCCcccccccCCCCceEEEEEEEec------C-CcEEE
Confidence            222  0 0 0011224467888887      4 45765

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.80  E-value=0.00024  Score=50.32  Aligned_cols=90  Identities=12%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--e----eeeEEEeeecCCccEE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--T----SMQSRVDALDRDNLYC   75 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--~----~~kEri~~vDe~~~~~   75 (115)
                      |..++..+..|++|++++|++| .|+.+ ++.|.|..       .++-.+|+...++  .    ...-++..+|+. +.+
T Consensus         9 ~~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~~~~~~~~v~e~~p~-~~l   78 (157)
T cd08899           9 GGATLRFERLLPAPIEDVWAAL-TDPER-LARWFAPG-------TGDLRVGGRVEFVMDDEEGPNATGTILACEPP-RLL   78 (157)
T ss_pred             CCeEEEEEEecCCCHHHHHHHH-cCHHH-HHhhcCCC-------CCCcccCceEEEEecCCCCCccceEEEEEcCC-cEE
Confidence            3457899999999999999995 89887 59999932       1333455554444  2    356677767666 456


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|+...++      .....++.|++.       +|||.+
T Consensus        79 ~~~~~~~~------~~~~~~~~l~~~-------~~gT~v  104 (157)
T cd08899          79 AFTWGEGG------GESEVRFELAPE-------GDGTRL  104 (157)
T ss_pred             EEEecCCC------CCceEEEEEEEc-------CCCEEE
Confidence            67665443      122456667776       356755

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=97.73  E-value=0.00049  Score=46.29  Aligned_cols=89  Identities=13%  Similarity=-0.002  Sum_probs=52.8

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--e----eeeEEEeeecCCccEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--T----SMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--~----~~kEri~~vDe~~~~~~y~   78 (115)
                      +++.++.|++|++++|++ +.|... +|.|.+...     .+++..+|.--.+.  .    .+.=++.++++.+ .+.|+
T Consensus         1 ~~~~~~~i~ap~e~Vw~~-~td~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~   72 (136)
T cd08893           1 KFVYVTYIRATPEKVWQA-LTDPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGTVDVEGEVLESDPPR-RLVHT   72 (136)
T ss_pred             CeEEEEEecCCHHHHHHH-HcCchh-hhheecccc-----cccCCcCCCeEEEEeCCCcccccceEEEEecCCC-eEEEE
Confidence            478899999999999999 489887 599998622     23444444433333  2    2345566676444 45566


Q ss_pred             EEecCcc-CcceEEEEEEEEEEec
Q 044934           79 VFEEDCI-SDILELIVFQIKFGPY  101 (115)
Q Consensus        79 vieG~~l-~~~~~s~~~~i~v~p~  101 (115)
                      .-.++.. ...-.....++.++|.
T Consensus        73 ~~~~~~~~~~~~~~~~v~~~l~~~   96 (136)
T cd08893          73 WRAVWDPEMAAEPPSRVTFEIEPV   96 (136)
T ss_pred             EecCCCcccCCCCCEEEEEEEEec
Confidence            5432221 0112234556667776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=97.67  E-value=0.00055  Score=49.30  Aligned_cols=91  Identities=12%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEE----Eceee--eEEEeeecCCccEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEV----VSTSM--QSRVDALDRDNLYCKYT   78 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~----~t~~~--kEri~~vDe~~~~~~y~   78 (115)
                      .++-+..|++|++++|+. +.|+..+ ...+|+ ++|++ .+||.-.+.++.    ++.++  +=++..+|+..++++..
T Consensus         2 ~~~G~f~V~~p~e~Vw~~-L~dpe~~-a~ciPG-~qs~e-~~g~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~   77 (146)
T COG3427           2 DYEGTFRVAAPPEAVWEF-LNDPEQV-AACIPG-VQSVE-TNGDEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITIN   77 (146)
T ss_pred             cccceEEecCCHHHHHHH-hcCHHHH-HhhcCC-cceee-ecCCeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEE
Confidence            467789999999999999 6998885 679996 99998 456642222221    11333  44556677899999888


Q ss_pred             EEecCccCcceEEEEEEEEEEec
Q 044934           79 VFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      .-+|..  ...-..+..++++|.
T Consensus        78 g~G~~~--~g~~~~~~~v~l~~~   98 (146)
T COG3427          78 GSGGGA--AGFADGTVDVQLEPS   98 (146)
T ss_pred             eecccc--cceeeeeeEEEEEEc
Confidence            766443  567778899999998

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.50  E-value=0.002  Score=44.80  Aligned_cols=95  Identities=9%  Similarity=-0.021  Sum_probs=56.3

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCcc-EEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNL-YCK   76 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~-~~~   76 (115)
                      ++.+..+++|++++|++| .|... +.+|.+..--.+...+.|..+|..-.+.        ..+.=++..+|+.++ .++
T Consensus         2 l~i~r~~~ap~e~Vw~a~-Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t   79 (142)
T cd07826           2 IVITREFDAPRELVFRAH-TDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQT   79 (142)
T ss_pred             EEEEEEECCCHHHHHHHh-CCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEE
Confidence            567788999999999995 88766 5788875423333445565555443332        123445666776543 344


Q ss_pred             EEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           77 YTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        77 y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.. ++..  ..  ....++.+.|.       +|||.+
T Consensus        80 ~~~-~~~~--~~--~s~v~~~l~~~-------~~gT~l  105 (142)
T cd07826          80 EEF-EGLP--DG--VALETVTFTEL-------GGRTRL  105 (142)
T ss_pred             eEe-cCCC--CC--ceEEEEEEEEC-------CCCEEE
Confidence            443 3322  12  23557778886       456754

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.46  E-value=0.0029  Score=43.75  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             EEEEEEeccCHHHHHHHHhccccccccccccc-ceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCccE-E
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQ-AFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNLY-C   75 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~-~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~~-~   75 (115)
                      +..+..+++|++++|+++ .|... +.+|... .--.++..+.|-.+|..-.+.        ....=++..+|+.++. +
T Consensus         2 ~~i~r~~~ap~e~Vw~a~-tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~l~~   79 (143)
T cd08900           2 FTLERTYPAPPERVFAAW-SDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDERIVY   79 (143)
T ss_pred             EEEEEEeCCCHHHHHHHh-cCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCceEEE
Confidence            556788999999999995 88776 5888854 122233333444444332221        1345566777765544 3


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ++..-.++.- ..  ....++.|+|.       +|||.+
T Consensus        80 t~~~~~~~~~-~~--~s~v~~~l~~~-------~~gT~l  108 (143)
T cd08900          80 TYTMHIGGTL-LS--ASLATVEFAPE-------GGGTRL  108 (143)
T ss_pred             EEeeccCCcc-cc--ceEEEEEEEEC-------CCCEEE
Confidence            4333323211 12  23467888887       456754

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.44  E-value=0.0031  Score=43.84  Aligned_cols=98  Identities=5%  Similarity=-0.074  Sum_probs=53.8

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc------e--eeeEEEeeecCCccE-EE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS------T--SMQSRVDALDRDNLY-CK   76 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t------~--~~kEri~~vDe~~~~-~~   76 (115)
                      +..+..++||++++|++| .|... +.+|.+..=-.+...+.|..+|..-.+.      .  ...-++..+|+.++. ++
T Consensus         2 l~i~r~i~a~~e~Vw~a~-t~pe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~l~~t   79 (146)
T cd08896           2 LVLSRTIDAPRELVWRAW-TEPEL-LKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGERLVFT   79 (146)
T ss_pred             eEEEEEeCCCHHHHHHHc-CCHHH-HhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCCEEEEE
Confidence            456789999999999995 88666 4788763201122222333333322221      1  235667778876643 34


Q ss_pred             EEEEec-CccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           77 YTVFEE-DCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        77 y~vieG-~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +...++ ++.....  ...++.|+|.       +|||.+
T Consensus        80 ~~~~~~~~~~~~~~--~~v~~~~~~~-------~~gT~L  109 (146)
T cd08896          80 DALTPGWRPAEKPF--MTAIITFEDE-------GGGTRY  109 (146)
T ss_pred             EeecCCcCCCCCCc--EEEEEEEEec-------CCcEEE
Confidence            333332 2211222  3457888887       456754

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.35  E-value=0.0023  Score=43.83  Aligned_cols=90  Identities=10%  Similarity=0.110  Sum_probs=53.2

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceee--EEEEecCCccccEEEEc---------eeeeEEEeeecCCcc
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKS--IVYEQGYGEVGSIEVVS---------TSMQSRVDALDRDNL   73 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~s--ve~~eGdg~~Gsir~~t---------~~~kEri~~vDe~~~   73 (115)
                      |++.++.++||++++|+++ .|... +.+|++. ...  +...+.|..+|..-.+.         ..+.-++..+++. +
T Consensus         1 ~~~~~~~~~ap~e~Vw~a~-td~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~   76 (133)
T cd08897           1 KITVETTVDAPIEKVWEAW-TTPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-K   76 (133)
T ss_pred             CEEEEEEeCCCHHHHHHHh-CCHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCC-C
Confidence            4678899999999999995 88666 5899643 111  11123454455443331         1124455556554 4


Q ss_pred             EEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           74 YCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        74 ~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .+.|+...|         ...++.++|.       +|||.+
T Consensus        77 ~l~~~~~~~---------~~v~~~l~~~-------~~gT~l  101 (133)
T cd08897          77 LIEYTMEDG---------REVEVEFTEE-------GDGTKV  101 (133)
T ss_pred             EEEEEcCCC---------CEEEEEEEEC-------CCCEEE
Confidence            455775321         2468888887       466765

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=97.21  E-value=0.0016  Score=48.76  Aligned_cols=71  Identities=8%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCccE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~~   74 (115)
                      ...++.+++|+.||+++|+.+ +|+.+| |.|+. .+.|+++++.+-     -.|+        -+.+-+|. =|..+..
T Consensus        69 ~i~v~~~V~I~kPae~vy~~W-~dLe~l-P~~Mk-hl~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it-~d~~~e~  139 (217)
T COG5637          69 PIEVEVQVTIDKPAEQVYAYW-RDLENL-PLWMK-HLDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT-KDIPGER  139 (217)
T ss_pred             ceEEEEEEEeCChHHHHHHHH-Hhhhhh-hHHHH-hhceeeccCCCc-----cceeEcCCCCceEEEeehhh-ccCCCcE
Confidence            467889999999999999996 999995 99998 599999997753     2233        23344555 4788888


Q ss_pred             EEEEEEec
Q 044934           75 CKYTVFEE   82 (115)
Q Consensus        75 ~~y~vieG   82 (115)
                      +.+.=++|
T Consensus       140 I~W~Sl~G  147 (217)
T COG5637         140 IQWESLPG  147 (217)
T ss_pred             EeeecCCC
Confidence            99999988

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=97.16  E-value=0.0079  Score=41.92  Aligned_cols=86  Identities=19%  Similarity=0.163  Sum_probs=50.1

Q ss_pred             EEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEE-Ec-----eeeeEEEeeecCCccEEEEEEEec
Q 044934            9 DGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEV-VS-----TSMQSRVDALDRDNLYCKYTVFEE   82 (115)
Q Consensus         9 ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~-~t-----~~~kEri~~vDe~~~~~~y~vieG   82 (115)
                      +.+|++|++++|+. +.|..++ -..+|+ +++++.+. +.-.+.++. +-     -..+=++..+|++++.. .++-..
T Consensus         2 s~~v~a~~~~vw~~-l~D~~~l-~~ciPG-~~~~e~~~-~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~g~   76 (140)
T PF06240_consen    2 SFEVPAPPEKVWAF-LSDPENL-ARCIPG-VESIEKVG-DEYKGKVKVKVGPIKGTFDGEVRITEIDPPESYT-LEFEGR   76 (140)
T ss_dssp             EEEECS-HHHHHHH-HT-HHHH-HHHSTT-EEEEEEEC-TEEEEEEEEESCCCEEEEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred             cEEecCCHHHHHHH-hcCHHHH-HhhCCC-cEEeeecC-cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcceE-eeeecc
Confidence            57899999999999 5998886 679996 99998876 432233321 11     12233555677777653 333333


Q ss_pred             CccCcceEEEEEEEEEEec
Q 044934           83 DCISDILELIVFQIKFGPY  101 (115)
Q Consensus        83 ~~l~~~~~s~~~~i~v~p~  101 (115)
                      +..  .-.+.+..+++...
T Consensus        77 g~~--~~~~~~~~~~~~~~   93 (140)
T PF06240_consen   77 GRG--GGSSASANITLSLE   93 (140)
T ss_dssp             ECT--CCEEEEEEEEEEEC
T ss_pred             CCc--cceEEEEEEEEEcC
Confidence            332  12344555555555

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=97.16  E-value=0.012  Score=41.02  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=50.4

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccce-------eeEEEEecCCcc-ccEEEEc----eeeeEEEeeecCCcc
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAF-------KSIVYEQGYGEV-GSIEVVS----TSMQSRVDALDRDNL   73 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v-------~sve~~eGdg~~-Gsir~~t----~~~kEri~~vDe~~~   73 (115)
                      +..++.|+||++++|+|| .|  . +.+|.+..-       ..+++   |..+ |..+...    ....=++.++|+.++
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~-t~--~-l~~W~~p~~~~~~~~~~~~~~---d~~~GG~~~~~~~~g~~~~~g~v~~v~p~~~   74 (149)
T cd08891           2 VRKSVTVPAPPERAFEVF-TE--G-FGAWWPPEYHFVFSPGAEVVF---EPRAGGRWYEIGEDGTECEWGTVLAWEPPSR   74 (149)
T ss_pred             eEEEEEecCCHHHHHHHH-Hh--c-hhhccCCCcccccCCCccEEE---cccCCcEEEEecCCCcEeceEEEEEEcCCCE
Confidence            578999999999999996 55  2 467765321       22222   2222 2232211    222346666776654


Q ss_pred             EEEEEEE-ec--CccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           74 YCKYTVF-EE--DCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        74 ~~~y~vi-eG--~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .. |+-. ..  .....+.  -..++.|+|.      +++||.+
T Consensus        75 l~-~tw~~~~~~~~~~~~~--t~vt~~l~~~------~~~gT~l  109 (149)
T cd08891          75 LV-FTWQINADWRPDPDKA--SEVEVRFEAV------GAEGTRV  109 (149)
T ss_pred             EE-EEeccCCCcCcCCCCc--eEEEEEEEEC------CCCCeEE
Confidence            33 4432 11  1111222  2578888887      5367765

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.13  E-value=0.0071  Score=41.24  Aligned_cols=85  Identities=8%  Similarity=0.086  Sum_probs=50.5

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEceeeeEEEeeecCCccE-EEEEEEecCc
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLY-CKYTVFEEDC   84 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t~~~kEri~~vDe~~~~-~~y~vieG~~   84 (115)
                      ++.+..++||++++|+|| .|... +.+|... ..+.+...|    |..+...+.+.=++..+++.++. +++... +..
T Consensus         2 i~~~r~i~ap~e~Vw~A~-T~~e~-l~~W~~~-~~~~d~~~G----G~~~~~~g~~~g~~~~i~p~~~l~~~w~~~-~~~   73 (126)
T cd08892           2 ISLTETFQVPAEELYEAL-TDEER-VQAFTRS-PAKVDAKVG----GKFSLFGGNITGEFVELVPGKKIVQKWRFK-SWP   73 (126)
T ss_pred             eEEEEEECCCHHHHHHHH-CCHHH-HHhhcCC-CceecCCCC----CEEEEeCCceEEEEEEEcCCCEEEEEEEcC-CCC
Confidence            577899999999999995 88666 4788853 334444434    34444444445566777755443 344432 211


Q ss_pred             cCcceEEEEEEEEEEec
Q 044934           85 ISDILELIVFQIKFGPY  101 (115)
Q Consensus        85 l~~~~~s~~~~i~v~p~  101 (115)
                      . ...  -..++.+++.
T Consensus        74 ~-~~~--s~v~~~l~~~   87 (126)
T cd08892          74 E-GHY--STVTLTFTEK   87 (126)
T ss_pred             C-CCc--EEEEEEEEEC
Confidence            1 122  3467777776

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.10  E-value=0.011  Score=40.59  Aligned_cols=92  Identities=10%  Similarity=0.046  Sum_probs=52.9

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccc-cceeeEEEEecCCccccEEEEc------e--eeeEEEeeecCCccEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLP-QAFKSIVYEQGYGEVGSIEVVS------T--SMQSRVDALDRDNLYCK   76 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P-~~v~sve~~eGdg~~Gsir~~t------~--~~kEri~~vDe~~~~~~   76 (115)
                      ++.+..+++|++++|++| .|... +.+|.+ +.+... ..+.|..+|..-.+.      .  ...-++.++++.+ .+.
T Consensus         2 l~~~r~i~ap~e~Vw~a~-t~p~~-l~~W~~p~~~~~~-~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~   77 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAW-TDPEH-LAQWWGPEGFTNT-THEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV   77 (139)
T ss_pred             EEEEEEeCCCHHHHHHHh-CCHHH-HhhccCcCCCcce-EEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence            567788999999999995 88766 488864 333222 223343344332221      1  1234666777655 344


Q ss_pred             EEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           77 YTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        77 y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      |+.-.++    ..  ...++.|+|.       +|||.+
T Consensus        78 ~t~~~~~----~~--~~v~~~~~~~-------~~gT~l  102 (139)
T cd08894          78 YDHGSGP----PR--FRLTVTFEEQ-------GGKTRL  102 (139)
T ss_pred             EEeccCC----Cc--EEEEEEEEEC-------CCCEEE
Confidence            6653321    12  3467888887       467765

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.07  E-value=0.021  Score=39.61  Aligned_cols=30  Identities=33%  Similarity=0.614  Sum_probs=24.8

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccc
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLP   36 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P   36 (115)
                      +++.+..++||++++|+++ .|... +++|.+
T Consensus         1 ~~~~~r~i~ap~e~Vw~a~-td~~~-~~~W~~   30 (146)
T cd08895           1 TDRLHRVIAAPPERVYRAF-LDPDA-LAKWLP   30 (146)
T ss_pred             CEEEEEEECCCHHHHHHHH-cCHHH-HhhcCC
Confidence            3567788999999999995 88777 488876

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=96.89  E-value=0.018  Score=39.65  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=51.2

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-----eeeeEEEeeecCCccEEEEEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-----TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-----~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      .+.++.++||++++|++| .|... +.+|.+. -.+.++..|    |.+ .|.     ..+.=++..+|+. +.+.|+.-
T Consensus         2 ~~~~~~i~ap~e~Vw~a~-t~p~~-l~~W~~~-~~~~~~~~G----g~~-~~~~~~~~~~~~g~~~~~~p~-~~l~~~w~   72 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAF-VDPEI-TTKFWFT-GSSGRLEEG----KTV-TWDWEMYGASVPVNVLEIEPN-KRIVIEWG   72 (136)
T ss_pred             eeEEEEecCCHHHHHHHh-cCHHH-hcccccc-CCCccccCC----CEE-EEEEEccCCceEEEEEEEcCC-CEEEEEec
Confidence            467899999999999995 88776 4787553 224444333    222 222     2233355556544 44556643


Q ss_pred             ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           81 EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        81 eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .+    ....  ..+++|++.      ++|||.+
T Consensus        73 ~~----~~~s--~v~~~l~~~------~~ggT~l   94 (136)
T cd08901          73 DP----GEPT--TVEWTFEEL------DDGRTFV   94 (136)
T ss_pred             CC----CCCE--EEEEEEEEC------CCCcEEE
Confidence            22    1222  357788887      4467764

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=96.88  E-value=0.041  Score=39.78  Aligned_cols=43  Identities=16%  Similarity=0.257  Sum_probs=36.5

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG   49 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg   49 (115)
                      ..+..+..+++||+++|+. +.|... .|+|.| .+.+++++|-++
T Consensus        41 ~~~k~~~~i~~s~e~v~~v-i~d~e~-~~~w~~-~~~~~~vie~~~   83 (195)
T cd08876          41 KEFKAVAEVDASIEAFLAL-LRDTES-YPQWMP-NCKESRVLKRTD   83 (195)
T ss_pred             EEEEEEEEEeCCHHHHHHH-HhhhHh-HHHHHh-hcceEEEeecCC
Confidence            4667788899999999999 589887 599999 499999988754

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=96.52  E-value=0.018  Score=39.93  Aligned_cols=87  Identities=15%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             eccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEceeeeEEEeeecCCcc-EEEEEEEecCccCcceE
Q 044934           12 VAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNL-YCKYTVFEEDCISDILE   90 (115)
Q Consensus        12 i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t~~~kEri~~vDe~~~-~~~y~vieG~~l~~~~~   90 (115)
                      ++||++++|+|| .|... +.+|.=+....++...|    |..+.+.+.+.=++..+|+.++ .++++.-+.+.  ..++
T Consensus         1 f~ap~e~Vw~A~-Tdp~~-l~~w~~~~~~~~d~~~G----G~f~~~~~~~~G~~~ev~pp~rlv~tw~~~~~~~--~~~s   72 (132)
T PTZ00220          1 FYVPPEVLYNAF-LDAYT-LTRLSLGSPAEMDAKVG----GKFSLFNGSVEGEFTELEKPKKIVQKWRFRDWEE--DVYS   72 (132)
T ss_pred             CCCCHHHHHHHH-cCHHH-HHHHhcCCCccccCCcC----CEEEEecCceEEEEEEEcCCCEEEEEEecCCCCC--CCce
Confidence            479999999995 88665 47774111223333333    3344443444446666776664 34454422111  2233


Q ss_pred             EEEEEEEEEecccccccCCCceee
Q 044934           91 LIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        91 s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                        ..++.++|.      ++|||.+
T Consensus        73 --~vt~~~~~~------~~g~T~l   88 (132)
T PTZ00220         73 --KVTIEFRAV------EEDHTEL   88 (132)
T ss_pred             --EEEEEEEeC------CCCcEEE
Confidence              478888886      5567754

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=96.17  E-value=0.059  Score=35.46  Aligned_cols=85  Identities=13%  Similarity=0.071  Sum_probs=47.7

Q ss_pred             ccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEE-c-----eeeeEEEeeecCCccEEEEEEEecCccC
Q 044934           13 AAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV-S-----TSMQSRVDALDRDNLYCKYTVFEEDCIS   86 (115)
Q Consensus        13 ~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~-t-----~~~kEri~~vDe~~~~~~y~vieG~~l~   86 (115)
                      +||++++|++| .|... +.+|.+.....     .+..+|..-.+ .     -...=++..+++.++ +.|+.--++.. 
T Consensus         1 ~ap~e~Vw~a~-t~~~~-~~~W~~~~~~~-----~~~~~Gg~~~~~~~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~~-   71 (124)
T PF08327_consen    1 DAPPERVWEAL-TDPEG-LAQWFTTSEAE-----MDFRPGGSFRFMDPDGGEFGFDGTVLEVEPPER-IVFTWRMPDDP-   71 (124)
T ss_dssp             SSSHHHHHHHH-HSHHH-HHHHSEEEEEE-----EECSTTEEEEEEETTSEEEEEEEEEEEEETTTE-EEEEEEEETSS-
T ss_pred             CcCHHHHHHHH-CCHhH-HhhccCCCcce-----eeeecCCEEEEEecCCCCceeeEEEEEEeCCEE-EEEEEEccCCC-
Confidence            68999999995 88666 47883222222     33344444444 1     223334777777665 55664333322 


Q ss_pred             cceEEEEEEEEEEecccccccCCCceee
Q 044934           87 DILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        87 ~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      + -.....++.|++.       ++||.+
T Consensus        72 ~-~~~~~v~~~~~~~-------~~~T~l   91 (124)
T PF08327_consen   72 D-GPESRVTFEFEEE-------GGGTRL   91 (124)
T ss_dssp             S-CEEEEEEEEEEEE-------TTEEEE
T ss_pred             C-CCceEEEEEEEEc-------CCcEEE
Confidence            1 2234567777776       556754

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=95.80  E-value=0.026  Score=40.68  Aligned_cols=94  Identities=18%  Similarity=0.297  Sum_probs=67.7

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKY   77 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y   77 (115)
                      +++...-++-+|+++|++ +.|.... |+.+|- -.+.++.+.+.. .-+-.++       +++.-|+. +++..+++.-
T Consensus         3 ~~~~s~lv~y~a~~mF~L-V~dV~~Y-P~FlP~-C~~s~v~~~~~~-~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~   77 (146)
T COG2867           3 QIERTALVPYSASQMFDL-VNDVESY-PEFLPW-CSASRVLERNER-ELIAELDVGFKGIRETFTTRVT-LKPTARSIDM   77 (146)
T ss_pred             eeEeeeeccCCHHHHHHH-HHHHHhC-chhccc-cccceEeccCcc-eeEEEEEEEhhheeeeeeeeee-ecCchhhhhh
Confidence            567788899999999999 8998884 999995 667778888752 2344444       56666766 5555557777


Q ss_pred             EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ++++|.     ++.....=+|+|-      ++++|.|
T Consensus        78 ~l~~GP-----Fk~L~~~W~F~pl------~~~~ckV  103 (146)
T COG2867          78 KLIDGP-----FKYLKGGWQFTPL------SEDACKV  103 (146)
T ss_pred             hhhcCC-----hhhhcCceEEEEC------CCCceEE
Confidence            777664     5555666888896      5677865

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=95.22  E-value=0.22  Score=35.17  Aligned_cols=32  Identities=16%  Similarity=0.344  Sum_probs=27.3

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccc
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLP   36 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P   36 (115)
                      ..++..|..|++|++++|+|| .|... +++|+.
T Consensus         7 ~~~~~~er~i~aP~e~Vf~A~-Tdpe~-l~~W~~   38 (149)
T COG3832           7 DRTLEIERLIDAPPEKVFEAL-TDPEL-LARWFM   38 (149)
T ss_pred             CceEEEEEeecCCHHHHHHHh-cCHHH-HHhhcC
Confidence            457889999999999999995 88665 589987

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=94.32  E-value=1.3  Score=31.84  Aligned_cols=91  Identities=11%  Similarity=0.213  Sum_probs=47.5

Q ss_pred             EEEEEEeccCH--------HHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCC---
Q 044934            6 FDKDGSVAAAP--------SRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRD---   71 (115)
Q Consensus         6 ~~~ei~i~a~a--------~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~---   71 (115)
                      +++.++||-|.        +++|+-+.....+ -....| .+.+|++++-. +..-.|.++   ..++|++....+.   
T Consensus         2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg~~~v~E~v~~~~~~~V~   78 (149)
T PF08982_consen    2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFGGATVRERVTLYPPERVD   78 (149)
T ss_dssp             EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEETTEEEEEEEEEETTTEEE
T ss_pred             ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEECCcEEEEEEEEeCCcEEE
Confidence            55666666554        5799987654444 123555 69999999775 345567777   7888888743222   


Q ss_pred             -----ccEEEEEEEecCccCcceEEEEEEEEEEe
Q 044934           72 -----NLYCKYTVFEEDCISDILELIVFQIKFGP  100 (115)
Q Consensus        72 -----~~~~~y~vieG~~l~~~~~s~~~~i~v~p  100 (115)
                           .-+++-.+-|++. +.-|=.|.++..+..
T Consensus        79 f~~~~Gs~lt~~I~e~~~-g~L~ltf~ye~~~p~  111 (149)
T PF08982_consen   79 FAQHDGSSLTNIISEPEP-GDLFLTFTYEWRLPG  111 (149)
T ss_dssp             ESSSBEEEEEEEEEEEET-TEEEEEEEEEEE---
T ss_pred             EEcCCCCEEEEEEecCCC-CcEEEEEEEEecccc
Confidence                 1123334444443 255677777777643

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=93.16  E-value=0.95  Score=32.37  Aligned_cols=50  Identities=10%  Similarity=0.242  Sum_probs=35.0

Q ss_pred             CHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEee
Q 044934           15 APSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDA   67 (115)
Q Consensus        15 ~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~   67 (115)
                      +.+++|+-+.....+  |..+-..+.+|++++.++. -..|.++   ..++|++..
T Consensus        18 Tr~QlW~GL~~kar~--p~~Fvp~i~~c~Vl~e~~~-~l~Rel~f~~~~v~e~vt~   70 (141)
T cd08863          18 TRAQLWRGLVLRARE--PQLFVPGLDRCEVLSESGT-VLERELTFGPAKIRETVTL   70 (141)
T ss_pred             CHHHHHhHHHhhhCC--chhcccccceEEEEecCCC-EEEEEEEECCceEEEEEEe
Confidence            457999997655554  4333336999999988752 4558888   678888774

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=91.49  E-value=5.3  Score=30.79  Aligned_cols=102  Identities=11%  Similarity=0.007  Sum_probs=61.6

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc---------eeeeEEEee--ecCC
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS---------TSMQSRVDA--LDRD   71 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t---------~~~kEri~~--vDe~   71 (115)
                      ..+-.|..+++|++++|+. +.|... .++|-+ ...++++++-- ...+-++..+         ..+-.+-..  .|..
T Consensus        77 l~fk~e~~vd~s~~~v~dl-L~D~~~-R~~WD~-~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~  153 (235)
T cd08873          77 LSFCVELKVQTCASDAFDL-LSDPFK-RPEWDP-HGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDG  153 (235)
T ss_pred             eEEEEEEEecCCHHHHHHH-HhCcch-hhhhhh-cccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCC
Confidence            3467788899999999999 599887 699999 48899988742 2344344433         122211111  2222


Q ss_pred             c-cEEEEEEEecCc--c---CcceEEEEEEEEEEecccccccCCCceee
Q 044934           72 N-LYCKYTVFEEDC--I---SDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        72 ~-~~~~y~vieG~~--l---~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      + ..+...-+.-+.  .   --....+..-..+.|.      ++|+|.+
T Consensus       154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~------~~~~t~V  196 (235)
T cd08873         154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQD------CGTCTEV  196 (235)
T ss_pred             CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEEC------CCCcEEE
Confidence            2 334444444111  1   1245677777888887      6777755

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=90.69  E-value=5.5  Score=29.85  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=37.1

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEV   56 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~   56 (115)
                      +-.+.++++|++++|+. +.|..+ .++|.+ .+++.++++--+ ...-++.
T Consensus        47 ~~ge~~v~as~~~v~~l-l~D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~   95 (205)
T cd08874          47 FLGAGVIKAPLATVWKA-VKDPRT-RFLYDT-MIKTARIHKTFTEDICLVYL   95 (205)
T ss_pred             EEEEEEEcCCHHHHHHH-HhCcch-hhhhHH-hhhheeeeeecCCCeEEEEE
Confidence            44577899999999999 599887 699999 699999988633 3333343

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=82.64  E-value=20  Score=27.66  Aligned_cols=51  Identities=16%  Similarity=0.087  Sum_probs=39.2

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS   58 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t   58 (115)
                      ..+-.+..+++|++++++. +.|..+ .|+|.++ ..++++++--+ ..- |..++
T Consensus        78 l~fk~e~~vdvs~~~l~~L-L~D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~  129 (236)
T cd08914          78 LSVWVEKHVKRPAHLAYRL-LSDFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHIT  129 (236)
T ss_pred             EEEEEEEEEcCCHHHHHHH-HhChhh-hchhHHh-hceEEEEEEeCCCcC-EEEEe
Confidence            4566778899999999999 599888 6999995 88888876633 222 66655

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=81.85  E-value=1.9  Score=32.24  Aligned_cols=41  Identities=5%  Similarity=0.053  Sum_probs=32.6

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG   47 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG   47 (115)
                      .+-.+..+++|++++|.+++.|... .|+|.|+ +.++++++-
T Consensus        50 ~fk~~~~v~~~~~~l~~~ll~D~~~-~~~W~~~-~~~~~vi~~   90 (209)
T cd08906          50 TFILKAFMQCPAELVYQEVILQPEK-MVLWNKT-VSACQVLQR   90 (209)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhChhh-ccccCcc-chhhhheee
Confidence            4567888999999999643599888 5999995 888887755

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
3ie5_A	165	Crystal Structure Of Hyp-1 Protein From Hypericum P		5e-13
1e09_A	159	Solution Structure Of The Major Cherry Allergen Pru		5e-13
1fsk_A	159	Complex Formation Between A Fab Fragment Of A Monoc		8e-13
4a80_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		8e-13
1b6f_A	159	Birch Pollen Allergen Bet V 1 Length = 159		8e-13
4a8u_A	159	Crystal Structure Of Native Birch Pollen Allergen B		9e-13
1h2o_A	159	Solution Structure Of The Major Cherry Allergen Pru		1e-12
1llt_A	159	Birch Pollen Allergen Bet V 1 Mutant E45s Length =		2e-12
4a84_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		6e-12
1qmr_A	159	Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E4		2e-11
1fm4_A	159	Crystal Structure Of The Birch Pollen Allergen Bet		3e-11
2lpx_A	170	Solution Structure Of Strawberry Allergen Fra A 1e		4e-09
2k7h_A	157	Nmr Solution Structure Of Soybean Allergen Gly M 4		6e-07
1xdf_A	157	Crystal Structure Of Pathogenesis-Related Protein L		9e-07
3rws_A	168	Crystal Structure Of Medicago Truncatula Nodulin 13		1e-06
1icx_A	155	Crystal Structure Of Pathogenesis-Related Protein L		1e-06
2bk0_A	154	Crystal Structure Of The Major Celery Allergen Api		2e-06
1ifv_A	155	Crystal Structure Of Pathogenesis-Related Protein L		4e-06
2qim_A	158	Crystal Structure Of Pathogenesis-Related Protein L		6e-06
1tw0_A	157	Native Crystal Structure Of Spe16 Length = 157		3e-05
2wql_A	154	Crystal Structure Of The Major Carrot Allergen Dau		6e-04

>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum Perforatum (St John's Wort) Involved In Hypericin Biosynthesis Length = 165

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 15  APSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDA 67
           AP R+FKA V++ H +  K  P  FKS    +G G VG++  ++       T M  + D 
Sbjct: 21  APHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDE 80
Query: 68  LDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
           +D  N YCKYT+FE D + D +E +V+++K 
Sbjct: 81  IDAANFYCKYTLFEGDVLRDNIEKVVYEVKL 111

>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Length = 159

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS- 60
           GV  ++ + +    P R+FKAFV+D+ NL PK+ PQA K     +G G  G+I+ ++   
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 61  ------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
                 ++ ++D++D++N    YT+ E D + D LE I ++ K 
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKL 104

>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal Igg Antibody And The Major Allergen From Birch Pollen Bet V 1 Length = 159

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S   
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 ++ RVD +D  N    Y+V E   I D LE I  +IK
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103

>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans) Length = 159

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S   
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 ++ RVD +D  N    Y+V E   I D LE I  +IK
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103

>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1 Length = 159

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S   
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 ++ RVD +D  N    Y+V E   I D LE I  +IK
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103

>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1 Isoform J Length = 159

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S   
Sbjct: 1   GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 ++ RVD +D  N    Y+V E   + D LE I  +IK
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIK 103

>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Mutant E45w Length = 159

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS- 60
           GV  ++ + +    P R+FKAFV+D+ NL PK+ PQA K      G G  G+I+ ++   
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 61  ------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
                 ++ ++D++D++N    YT+ E D + D LE I ++ K 
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKL 104

>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s Length = 159

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+    G G  G+I+ +S   
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 ++ RVD +D  N    Y+V E   I D LE I  +IK
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103

>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A F30v Mutant In Complex With Deoxycholate Length = 159

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +R+FKAF++D  NL PK+ PQA  S+   +G G  G+I+ +S   
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 ++ RVD +D  N    Y+V E   I D LE I  +IK
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103

>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s, P108g Length = 159

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +R+FKAF++D   LFP++ PQA  S+    G G  G+I+ +S   
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 ++ RVD +D  N    Y+V E   I D LE I  +IK
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIK 103

>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l Length = 159

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +RMFKAF++D   L PK+ PQA  S+   +G G  G+I+ ++   
Sbjct: 1   GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 ++ RVD +D  N    Y+V E   + D LE I  +IK
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIK 103

>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e Length = 170

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS 60
           MGV  ++ + +      ++FKAFV+D+ NL PK+ PQA K     +G G  G+I+ ++  
Sbjct: 1   MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61  -------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
                  ++ ++ ++D+ N    Y++ E D +S+ +E I ++ K 
Sbjct: 61  EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKL 105

>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4 Length = 157

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV---- 57
           GV  F+ + +   AP+ ++KA V D+ N+ PK L  +FKS+   +G G  G+I+ +    
Sbjct: 1   GVFTFEDEINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLE 59
Query: 58  ---STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF--GP 100
              +  +  +++++D  NL   Y+V     + D  E I F  K   GP
Sbjct: 60  DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGP 107

>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2a From Yellow Lupine Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV---- 57
           GV  F+ + +   AP+R++KA V D+  + PK + +A +SI   +G G  G+I+ +    
Sbjct: 1   GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 58  ---STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
              +  +  +++A+D  NL   Y++     + D +E I F+ K 
Sbjct: 60  GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKL 103

>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1a From Yellow Lupine Length = 155

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV---- 57
           G+  F+ + S   AP++++KA   DS  + PK++ +  +S+   +G G  G+I+ +    
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 58  ---STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGP 100
              ++ +  ++DA+D  NL   Y++   + + + LE I ++ K  P
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILP 105

>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1 Length = 154

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           MGV     + + + +  ++F+ FVID   + PK  P A+KS+   +G G  G++++++  
Sbjct: 1   MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGP 100
                T+M  R+D ++++ L   Y+V + D +   +E I   +   P
Sbjct: 60  DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVP 106

>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1b From Yellow Lupine Length = 155

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSM 61
           GV  F+ +   A A +++FKA   DS ++ PK++ Q  +S+   +G G  G+++ ++ S 
Sbjct: 1   GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 62  QS-------RVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF--GP 100
                    ++DA+D  +    Y++     + + LE I F+ K   GP
Sbjct: 60  GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGP 107

>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2b From Yellow Lupine In Complex With Cytokinin Length = 158

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV--- 57
           MGV  F  + +   AP++++KA V D+  + PK + +  +S+   +G G  G+I+ +   
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 58  ----STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
               S  +  +++A+D  NL   Y++     + D +E I F+ K 
Sbjct: 60  EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKL 104

>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16 Length = 157

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTS- 60
           GV  F  + S + AP++++KA   DS  +  K +    +SI   +G G VG+I+ ++ + 
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANE 59
Query: 61  ------MQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIK 97
                 +  +VDA+D  NL   Y++     + + LE + F+ K
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETK 102

>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1 Length = 154

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 18 RMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDR 70
          ++F   V+D   + PK    A+KS V  +G G  G++ +++       T+M  R DA+++
Sbjct: 18 KIFSGIVLDVDTVIPKAATGAYKS-VEVKGDGGAGTVRIITLPEGSPITTMTVRTDAVNK 76
Query: 71 DNLYCKYTVFEEDCISDILELI 92
          + L    TV + D +   +E I
Sbjct: 77 EALSYDSTVIDGDILLGFIESI 98
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	1e-24
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	3e-24
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	6e-23
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	8e-23
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	3e-22
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	6e-22
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	5e-21
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	6e-21
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	4e-20
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	3e-17
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	4e-14
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	1e-04
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	2e-04

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 90.4 bits (224), Expect = 1e-24
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 13/121 (10%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +R+FKAF++D  NLFPK+ PQA  S+   +G G  G+I+ +S   
Sbjct: 1   GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
                 ++ RVD +D  N    Y+V E   + D LE I  +IK         + N   ++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVA------TPNGGSIL 114

Query: 115 K 115
           K
Sbjct: 115 K 115

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 86.2 bits (213), Expect = 6e-23
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 14/121 (11%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  F  + S + AP++++KA   DS  +  K +    +SI   +G G VG+I+ ++   
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANE 59

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
               + +  +VDA+D  NL   Y++     + + LE + F+ K          S    + 
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVA------GSGGGSIS 113

Query: 115 K 115
           K
Sbjct: 114 K 114

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 86.3 bits (213), Expect = 8e-23
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-- 58
           M      K+     AP R+FKA V++ H +  K  P  FKS    +G G VG++  ++  
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66

Query: 59  -----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKF 98
                T M  + D +D  N YCKYT+FE D + D +E +V+++K 
Sbjct: 67  DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKL 111

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score = 84.2 bits (208), Expect = 3e-22
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 3   VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---- 58
           V  F+    ++     ++     D   + PK+LP   K +   +G G VG+I + +    
Sbjct: 2   VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPE 61

Query: 59  ---TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115
              +  +  +   D  +      V E   +S  L       K               L+ 
Sbjct: 62  VSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSE------IEEDKTLVN 115

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 83.5 bits (206), Expect = 6e-22
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 13/121 (10%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +    P R+FKAFV+D+ NL PK+ PQA K     +G G  G+I+ ++   
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
                 ++ ++D++D++N    YT+ E D + D LE I ++ K         S +   ++
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVA------SPSGGSII 114

Query: 115 K 115
           K
Sbjct: 115 K 115

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 81.3 bits (200), Expect = 5e-21
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 1   MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV--- 57
           MGV  F  + +   AP++++KA V D+  + PK   +  +S+   +G G  G+I+ +   
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPK-AVETIQSVEIVEGNGGPGTIKKLTFI 59

Query: 58  ----STSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYK 102
               S  +  +++A+D  NL   Y++     + D +E I F+ K     
Sbjct: 60  EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGA 108

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 78.9 bits (194), Expect = 4e-20
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 14/121 (11%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           G+  F+ + S   AP++++KA   DS  + PK++    +S+   +G G  G+I+ +    
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIH 59

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
               + +  ++DA+D  NL   Y++   + + + LE I ++ K  P        +   + 
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILP------GPDGGSIG 113

Query: 115 K 115
           K
Sbjct: 114 K 114

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score = 72.4 bits (177), Expect = 3e-17
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 6   FDKDGSVAAAPSRMFKAF-VIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS------ 58
              +  VAA+   ++  +         P LLP AF+ +    G G VG+I  ++      
Sbjct: 31  IHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPGEF 89

Query: 59  -TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK 115
               + +   +D ++   K  + E   +   +   +  I   P      +   SC++K
Sbjct: 90  PHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVP------TGKDSCVIK 141

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score = 63.4 bits (154), Expect = 4e-14
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 15  APSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG-YGEVGSIEVVS-------TSMQSRVD 66
           A +  F        +   K  P   +     +G +G VGSI   +          + R++
Sbjct: 27  ASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIE 86

Query: 67  ALDRDNLYCKYTVFEEDCISDILELIVFQIKFGP 100
           A++ D     + V E D +    +  +  I+  P
Sbjct: 87  AVEPDKNLITFRVIEGD-LMKEYKSFLLTIQVTP 119

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 14  AAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV-------STSMQSRVD 66
            AP+ +    +    N  P+      K      G G+VGS+  V       +++   R++
Sbjct: 44  HAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLE 101

Query: 67  ALDRDNLYCKYTVFEEDCISDILELIVFQIKFGP 100
            +D D+    + V   +      + +    +F  
Sbjct: 102 FVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLN 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.97
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.93
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.92
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.92
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.91
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.9
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.9
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.88
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.88
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.86
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.85
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.82
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.26
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.2
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.18
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.17
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.13
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	98.78
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	98.71
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	98.67
2pcs_A	162	Conserved protein; structural genomics, unknown fu	98.65
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.37
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	98.33
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	98.19
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.14
2leq_A	146	Uncharacterized protein; start domains, structural	98.1
2lcg_A	142	Uncharacterized protein; start domain, structural	98.09
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.08
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.07
1xn5_A	146	BH1534 unknown conserved protein; structural genom	97.94
2ldk_A	172	Uncharacterized protein; structural genomics, nort	97.93
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	97.9
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	97.85
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	97.84
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	97.84
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	97.83
3put_A	166	Hypothetical conserved protein; structural genomic	97.79
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	97.79
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	97.78
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	97.76
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	97.73
2l9p_A	164	Uncharacterized protein; structural genomics, nort	97.69
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	97.67
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	97.62
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	97.61
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	97.58
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	97.35
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	97.3
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	97.29
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	97.22
2luz_A	192	CALU16; structural genomics, northeast structural	97.02
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	96.97
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.81
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	95.61
2lio_A	136	Uncharacterized protein; structural genomics, nort	95.23
3qsz_A	189	STAR-related lipid transfer protein; structural ge	94.47
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	94.3
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	94.29
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	85.97
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	82.6

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=3.6e-39  Score=231.15  Aligned_cols=108  Identities=24%  Similarity=0.457  Sum_probs=102.4

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCcc
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNL   73 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~   73 (115)
                      ||+.+++.|+++++||+|+|++|++|+|+|+|||+|++++|++ +||||++||||+||       .++||||+++|++||
T Consensus         1 mgv~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGdg~~Gsir~~t~~~g~~~~~~kErle~iD~~~~   79 (154)
T 2wql_A            1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEAL   79 (154)
T ss_dssp             --CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESSSSTTCEEEEECCTTCSCCEEEEEEEEEETTTT
T ss_pred             CCCeEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECCCCCCeEEEEEEcCCCCceEEEEEEEEEehhhC
Confidence            9999999999999999999999899999999999999999999 68999999999999       589999999999999


Q ss_pred             EEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           74 YCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        74 ~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      +++|+++|||++..+|++|+++++++|+      ++|||++|
T Consensus        80 ~~~y~iieGd~l~~~~~~~~~~ikv~p~------~~ggsvvk  115 (154)
T 2wql_A           80 SYDSTVIDGDILLGFIESIETHMVVVPT------ADGGSITK  115 (154)
T ss_dssp             EEEEEEEESGGGTTTEEEEEEEEEEEEC------TTSCEEEE
T ss_pred             EEEEEEEeccccccceEEEEEEEEEeeC------CCCcEEEE
Confidence            9999999999988999999999999999      89999985

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=2.2e-37  Score=224.13  Aligned_cols=108  Identities=34%  Similarity=0.599  Sum_probs=103.0

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCcc
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNL   73 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~   73 (115)
                      ||+++++.|++|++||+++|++|++|+++|+|+|+|+.|++++++||||++||||+|+       +++||||+++|++||
T Consensus         7 Mg~~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~iD~~~~   86 (165)
T 3ie5_A            7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDEIDAANF   86 (165)
T ss_dssp             CSCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSCCEEEEEEEEEEGGGT
T ss_pred             eeeEEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCCceEEEEEEEEchhcC
Confidence            9999999999999999999999889999988999999999999999999999999999       389999999999999


Q ss_pred             EEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           74 YCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        74 ~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      +++|+++||+++.++|++|+++++|+ .      ++|||+|+
T Consensus        87 ~~~Y~iieG~~l~~~~~~y~~~i~v~-~------~~ggs~vk  121 (165)
T 3ie5_A           87 YCKYTLFEGDVLRDNIEKVVYEVKLE-A------VGGGSKGK  121 (165)
T ss_dssp             EEEEEEEEEGGGTTTEEEEEEEEEEE-E------ETTEEEEE
T ss_pred             EEEEEEecCCCCccceEEEEEEEEEE-e------CCCceEEE
Confidence            99999999999877999999999999 5      68899875

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=1.4e-36  Score=218.20  Aligned_cols=108  Identities=35%  Similarity=0.621  Sum_probs=103.0

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      |+.+++.|++|++||+|+|++|++|+++|+|+|+|++|++|+++||||++||||+||       .++||||+++|++||+
T Consensus         1 ~~~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~   80 (159)
T 4a8u_A            1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSCSEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCccEEEEEEEEEccccCE
Confidence            789999999999999999999669999988999999999999999999999999999       3899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|+++|||++.++|++|+++++|+|.      ++|||+|+
T Consensus        81 ~~y~iiegd~l~~~~~~y~~ti~v~p~------~~ggs~v~  115 (159)
T 4a8u_A           81 YSYSVIEGGPVGDTLEKISNEIKIVAT------PNGGSILK  115 (159)
T ss_dssp             EEEEEEEETTCBTTEEEEEEEEEEEEC------TTSCEEEE
T ss_pred             EEEEEeeCCCCccceEEEEEEEEEEEC------CCCceEEE
Confidence            999999999987889999999999998      88899875

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=1.5e-36  Score=216.82  Aligned_cols=108  Identities=19%  Similarity=0.294  Sum_probs=103.5

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---e----eeeEEEeeecCCcc
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---T----SMQSRVDALDRDNL   73 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~----~~kEri~~vDe~~~   73 (115)
                      || ++++.|+++++||+++|++|++|+++|+|+|+|+.+++|+++||||++||||.|+   +    ++||||+.+|++|+
T Consensus         1 M~-~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~~~~kErl~~iD~~~~   79 (155)
T 2flh_A            1 MV-KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSH   79 (155)
T ss_dssp             CC-EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSSCEEEEEEEEEETTTT
T ss_pred             CC-cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCCcEEEEEEEEEeCCCC
Confidence            99 9999999999999999999889999988999999999999999999999999999   4    89999999999999


Q ss_pred             EEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           74 YCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        74 ~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      +++|+++||+++..+|++|+++++|+|.      ++|||+|+
T Consensus        80 ~~~y~iieg~~l~~~~~~~~~~i~v~p~------~~ggs~v~  115 (155)
T 2flh_A           80 EIGLQVIEGGYLSQGLSYYKTTFKLSEI------EEDKTLVN  115 (155)
T ss_dssp             EEEEEEEEEGGGGTTCSEEEEEEEEEEE------ETTEEEEE
T ss_pred             EEEEEEEeccccccCceEEEEEEEEEEC------CCCCEEEE
Confidence            9999999999887899999999999999      88899875

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=6e-34  Score=203.42  Aligned_cols=108  Identities=27%  Similarity=0.497  Sum_probs=100.2

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCcc
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNL   73 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~   73 (115)
                      ||+++++.+++|++||+++|++|..|+++++|+|+ +.|++|+++||||++||||.|+       .++||||+++|++|+
T Consensus         1 M~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eGdgg~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   79 (158)
T 2qim_A            1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANL   79 (158)
T ss_dssp             -CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHC-TTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGT
T ss_pred             CCCEEEEEEEEecCCHHHHHHHHhcCccchhhhHH-hhCcEEEEEecCCCCCeEEEEEEcCCCcceeEEEEEEEEecCCC
Confidence            99999999999999999999996349998889999 5899999999999999999999       379999999999999


Q ss_pred             EEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           74 YCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        74 ~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      +++|+++|||++.+.|++|+++++|+|.      ++|||+|+
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~------~~~gs~v~  115 (158)
T 2qim_A           80 GYNYSIVGGVGLPDTIEKISFETKLVEG------ANGGSIGK  115 (158)
T ss_dssp             EEEEEEEEESSCCCSEEEEEEEEEEEEC------STTCEEEE
T ss_pred             EEEEEEEeccCCccceEEEEEEEEEEec------CCCCEEEE
Confidence            9999999999886689999999999999      88889875

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=4.7e-34  Score=204.18  Aligned_cols=108  Identities=32%  Similarity=0.619  Sum_probs=101.4

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      |+++++.+++|++||+++|++|.+|+++++|+|+|+.|++|+++||||++||||.|+       .++||||+.+|++|++
T Consensus         1 ~~~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G~~~~~~kErl~~~D~~~~~   80 (159)
T 1e09_A            1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCCCCceEEEEEEEEEcCCCCE
Confidence            789999999999999999999644999888999999999999999999999999999       4799999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|+++|||++..+|++|+++++|.|.      ++|||+|+
T Consensus        81 ~~y~iieG~~~~~~~~~~~~~~~v~~~------~~~gs~v~  115 (159)
T 1e09_A           81 YSYTLIEGDALGDTLEKISYETKLVAS------PSGGSIIK  115 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEEEEEECCC------TTSSEEEE
T ss_pred             EEEEEEecccCcccceEEEEEEEEEec------CCCCEEEE
Confidence            999999999986799999999999998      78899875

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=4e-33  Score=199.14  Aligned_cols=107  Identities=29%  Similarity=0.473  Sum_probs=99.8

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      |+++++.|++|++||+++|++|..|+++++|+|+ +.|++|+++||||++||||.|+       .++||||+++|++|++
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~   79 (157)
T 1tw0_A            1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKID-GPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLG   79 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHTGGGGGGGSC-SSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhhhhHH-hhccEEEEEeCCCCCCeEEEEEeeCCCccceEEEEEEEEeccCCE
Confidence            7899999999999999999996449999899999 5899999999999999999999       3899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|+++|||++.+.|++|+++++|+|.      ++|||+|+
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~------~~~gs~v~  114 (157)
T 1tw0_A           80 YDYSIVGGTGLPESLEKLSFETKVVAG------SGGGSISK  114 (157)
T ss_dssp             EEEEEEECTTSCTTEEEEEEEEEEEEC------SSSSEEEE
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEec------CCCCEEEE
Confidence            999999999886689999999999998      78889875

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=1.5e-33  Score=209.79  Aligned_cols=106  Identities=21%  Similarity=0.317  Sum_probs=100.3

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhc-ccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVI-DSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~-d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      .++++.+++|++||+++|++|++ |+++|+|+|+|+.++||+++ |||++||||.|+       .++||||+++|++|++
T Consensus        28 ~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~~G~~~~~vkErle~iDde~~~  106 (201)
T 2vq5_A           28 TKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPGEFPHEYKEKFILVDNEHRL  106 (201)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECCTTCSSCEEEEEEEEEETTTTE
T ss_pred             ceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEecCCCcccEEEEEEEEEchhhCE
Confidence            46889999999999999999878 99998999999999999999 999999999999       3899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|+++|||++..+|++|+++++|+|.      ++|||+|+
T Consensus       107 ~sYsiieGd~l~~~~~~y~~tikv~p~------~dggs~vk  141 (201)
T 2vq5_A          107 KKVQMIEGGYLDLGVTYYMDTIHVVPT------GKDSCVIK  141 (201)
T ss_dssp             EEEEEEEEGGGGTTEEEEEEEEEEEEE------ETTEEEEE
T ss_pred             EEEEEEecCccccceeEEEEEEEEEEC------CCCCeEEE
Confidence            999999999987899999999999999      88899875

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=3.3e-33  Score=199.08  Aligned_cols=107  Identities=26%  Similarity=0.535  Sum_probs=99.6

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      |+++++.+++|++||+++|++|..|+++++|+|+ +.|++|+++||||++||||.|+       .++|||++++|++|++
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~   79 (155)
T 1icx_A            1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHS-TTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhcchhh-hhccEEEEEecCCCCCeEEEEEEecCCcceeEEEEEEEEeccCCE
Confidence            7899999999999999999996449998889999 5899999999999999999999       3899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|+++|||++.+.|++|+++++|+|.      ++|||+|+
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~------~~~gs~v~  114 (155)
T 1icx_A           80 YNYSIIGGEGLDESLEKISYESKILPG------PDGGSIGK  114 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEEC------GGGCEEEE
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEec------CCCCEEEE
Confidence            999999999886689999999999998      77889875

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.97  E-value=1.9e-31  Score=192.21  Aligned_cols=105  Identities=20%  Similarity=0.366  Sum_probs=96.8

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      .++++.+++|+|||+++|++|+.|++. +|+|+|+.|++|+++||| |++||||.|+       .++||||+++|++|++
T Consensus        16 ~~k~~~ev~i~apa~kvw~~~~~d~~~-lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~~kErl~~iD~~~~~   94 (166)
T 2i9y_A           16 VGKLETDVEIKASADKFHHMFAGKPHH-VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNL   94 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHGGGSSCSSC-CCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEEEEEEEEEEETTTTE
T ss_pred             ccEEEEEEEecCCHHHHHHHHhccccc-ccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceEEEEEEEEEeccCcE
Confidence            378999999999999999998778776 599999999999999999 8999999999       3899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCC-ceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNA-SCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~g-g~~vk  115 (115)
                      ++|+++|||++ ++|++|+++++|.|.      ++| ||+|+
T Consensus        95 ~~y~iieGd~~-~~~~~~~~ti~v~p~------~~g~gs~v~  129 (166)
T 2i9y_A           95 ITFRVIEGDLM-KEYKSFLLTIQVTPK------PGGPGSIVH  129 (166)
T ss_dssp             EEEEECCTTGG-GTEEEEEEEEEEEEE------EETTEEEEE
T ss_pred             EEEEEEeCCCC-CCeeEEEEEEEEEEC------CCCCCcEEE
Confidence            99999999985 899999999999998      665 89875

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.93  E-value=6.5e-25  Score=161.89  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=87.8

Q ss_pred             EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEEEE
Q 044934            7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~v   79 (115)
                      ....+|++||+++|++ ++|+++  |++.|+.|++|+++||||++||||.|+       .++||||+.+|++||+|+|++
T Consensus        38 ~~~~~I~Apa~~vW~l-v~df~~--~~~w~p~I~s~e~~eGdg~vGsVR~~t~~~G~p~~~vkErL~~iD~~~~~~sY~i  114 (190)
T 3kl1_A           38 LITQRIHAPASVVWPL-IRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRV  114 (190)
T ss_dssp             EEEEEESSCHHHHHHH-HHCTTC--GGGTCSSEEEEEEEESSSSTTCEEEEEECSSSSCEEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEecCCHHHHHHH-HhCCCC--hhHcccccCEEEEEcCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEEEEE
Confidence            3345899999999999 699998  666666899999999999999999999       489999999999999999999


Q ss_pred             EecCccCcceEEEEEEEEEEe--cccccccCCCceeeC
Q 044934           80 FEEDCISDILELIVFQIKFGP--YKLKKISSNASCLMK  115 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p--~~~~~~~~~gg~~vk  115 (115)
                      +||+++...|+++...++++|  .      +++||+|+
T Consensus       115 ieG~~~~~~Y~s~~~v~~~~~~~~------~~~gt~V~  146 (190)
T 3kl1_A          115 VGGEHRLKNYKSVTSVNEFLNQDS------GKVYTVVL  146 (190)
T ss_dssp             EEESSSCCSCEEEEEEEEEEC-CC------CCEEEEEE
T ss_pred             EecCCccccEEEEEEEEecccccC------CCCcEEEE
Confidence            999986689999999888887  4      45688874

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.92  E-value=1.1e-24  Score=162.49  Aligned_cols=92  Identities=17%  Similarity=0.149  Sum_probs=85.0

Q ss_pred             cEEEEEEE--EeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCcc
Q 044934            3 VLRFDKDG--SVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNL   73 (115)
Q Consensus         3 ~~~~~~ei--~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~   73 (115)
                      ..+++.++  +|+|||+++|++ ++||+++ |+|+| .|++|++ +|||++|+||.|+       .+++|||+++|+++|
T Consensus        49 ~~k~~~~V~~~I~ApadkVW~l-V~Df~~l-~kW~P-~V~s~ev-eGdg~vGsVR~vt~~~G~p~~~vkErL~~lDde~~  124 (205)
T 3oqu_A           49 ENQCTSALVKHIKAPLHLVWSL-VRRFDQP-QKYKP-FVSRCTV-IGDPEIGSLREVNVKSGLPATTSTERLELLDDEEH  124 (205)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHH-HTCTTCG-GGTCT-TEEEEEC-CSSCCTTCEEEEEECTTSSCSEEEEEEEEEETTTT
T ss_pred             CcEEEEEEeeEEcCCHHHHHHH-HhCcCCh-hHcCc-cceEEEe-eCCCCCCcEEEEEEcCCCccceEEEEEEEEECCCC
Confidence            46788999  999999999999 7999995 89999 7999985 8999999999999       489999999999999


Q ss_pred             EEEEEEEecCccCcceEEEEEEEEEEec
Q 044934           74 YCKYTVFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        74 ~~~y~vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      +|+|+++||++   +|++|+++++|.|.
T Consensus       125 ~~sYsIieG~l---pv~~Y~ati~V~p~  149 (205)
T 3oqu_A          125 ILGIKIIGGDH---RLKNYSSILTVHPE  149 (205)
T ss_dssp             EEEEEEEEESS---SCTTCEEEEEEEEE
T ss_pred             EEEEEEEecCc---ceeEEEEEEEEEEc
Confidence            99999999975   49999999999998

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.92  E-value=5.2e-24  Score=152.49  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC--ccccEEEEceeeeEEEeeecCCccEEEEEEEe
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG--EVGSIEVVSTSMQSRVDALDRDNLYCKYTVFE   81 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg--~~Gsir~~t~~~kEri~~vDe~~~~~~y~vie   81 (115)
                      .+++.+++|+|||+++|++ +.|++++  +|+|..++++++++|+|  ++|+||.+.++++|||+++|+++++++|++++
T Consensus         2 ~~v~~si~I~Ap~~~VW~~-v~Df~~~--~w~P~v~~s~e~~eg~~~~~vGsvR~~gg~v~Erl~~~D~~~~~~sY~ii~   78 (160)
T 3p51_A            2 PKVYNSIVVDAPVERVWSR-IRNFHDF--SWAPSLIKSCKKVGGGGGYSVGARRLLNGEFLDTLIAYSEIERRIMYSMDE   78 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHH-HCCTTCC--TTCTTTCCCEEEESSCCTTCTTCEEEETTTEEEEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEEEECCCHHHHHHH-HhCcCCC--eEccCceEEEEEEecCCCCCCCCEEEECCEEEEEEEEEcCCCcEEEEEEec
Confidence            3578999999999999999 6999995  99999888889999975  89999999888999999999999999999999


Q ss_pred             cCcc--CcceEEEEEEEEEEecccccccC-CCceeeC
Q 044934           82 EDCI--SDILELIVFQIKFGPYKLKKISS-NASCLMK  115 (115)
Q Consensus        82 G~~l--~~~~~s~~~~i~v~p~~~~~~~~-~gg~~vk  115 (115)
                      |++.  +..|++|.++++|+|.      + +|||+|+
T Consensus        79 g~l~~~~~~~~~y~~~~~v~p~------~~~ggt~V~  109 (160)
T 3p51_A           79 GPSPVSSGEIYNYVGNLHLLPV------TIDDTTFVE  109 (160)
T ss_dssp             CSTTSSTTTEEEEEEEEEEEEE------TTTTEEEEE
T ss_pred             CCCcccccceeEEEEEEEEEEe------cCCCCEEEE
Confidence            9642  0239999999999998      6 6789874

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.91  E-value=5.2e-24  Score=156.31  Aligned_cols=96  Identities=19%  Similarity=0.136  Sum_probs=85.3

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec-CCccccEEEEc-------eeeeEEEeeecCCccEEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG-YGEVGSIEVVS-------TSMQSRVDALDRDNLYCKY   77 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG-dg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y   77 (115)
                      .....+|+|||+++|++ ++||+++ |+|+| .|+++ .++| ||++|+||.|+       .+++|||+++|+++|+++|
T Consensus        29 ~~v~~~I~Apa~~VW~~-v~df~~l-~~w~P-~V~s~-~~eG~~ggvGsvR~lt~~~G~p~~~vkErL~~~D~~~~~~sY  104 (183)
T 3rt2_A           29 STLVKHIKAPLHLVWSI-VRRFDEP-QKYKP-FISRC-VVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGI  104 (183)
T ss_dssp             EEEEEEESSCHHHHHHH-HTCTTCG-GGTCT-TEEEE-EESSSCCCTTCEEEEEECCSSTTCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEeCCHHHHHHH-HhCcCch-hhcCc-cceEE-EeeCCCCCCCcEEEEEeCCCCccceEEEEEEEEECCCCEEEE
Confidence            44456899999999999 6999995 99999 69999 6899 78999999998       3899999999999999999


Q ss_pred             EEEecCccCcceEEEEEEEEEEecccccccC-CC--ceee
Q 044934           78 TVFEEDCISDILELIVFQIKFGPYKLKKISS-NA--SCLM  114 (115)
Q Consensus        78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~-~g--g~~v  114 (115)
                      +++||++   +|++|+++++|.|.      + +|  ||+|
T Consensus       105 ~Iieg~l---p~~~y~ati~v~p~------~~dG~~gt~V  135 (183)
T 3rt2_A          105 RIVGGDH---RLKNYSSTISLHSE------TIDGKTGTLA  135 (183)
T ss_dssp             EEEEESC---SCTTCEEEEEEEEE------EETTEEEEEE
T ss_pred             EEecCCc---ceeEEEEEEEEEEe------cCCCCCCEEE
Confidence            9999975   49999999999998      6 66  5876

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.90  E-value=1.4e-23  Score=156.82  Aligned_cols=89  Identities=16%  Similarity=0.148  Sum_probs=80.2

Q ss_pred             EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc-------eeeeEEEeeecCCccEEEEE
Q 044934            7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS-------TSMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~   78 (115)
                      ....+|+|||+++|++ ++||+++ |+|+| .|++|++++|| |++|+||.|+       .+++|||+++|+++|+|+|+
T Consensus        57 ~v~~~I~ApadkVW~l-v~Df~~l-~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDde~~~~sYs  133 (208)
T 3jrs_A           57 LLAQRIHAPPETVWSV-VRRFDRP-QIYKH-FIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFS  133 (208)
T ss_dssp             EEEEEESSCHHHHHHH-HTCTTCG-GGTCT-TEEEEECCTTCCCSTTCEEEEEECTTSSCCEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEeCCHHHHHHH-HhCcCCh-hHccc-cceEEEEecCCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEEEE
Confidence            3455899999999999 6999995 99999 79999999997 5999999998       58999999999999999999


Q ss_pred             EEecCccCcceEEEEEEEEEEec
Q 044934           79 VFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      ++||++   ++++|+++++|.|.
T Consensus       134 IieG~l---pv~~Y~sti~V~p~  153 (208)
T 3jrs_A          134 ITGGEH---RLRNYKSVTTVHRF  153 (208)
T ss_dssp             EEESSS---SCTTCEEEEEEEEE
T ss_pred             EeeCCc---ceeeEEEEEEEEEc
Confidence            999985   36777889999996

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.90  E-value=7.8e-23  Score=143.80  Aligned_cols=95  Identities=13%  Similarity=0.294  Sum_probs=86.2

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      +++.+++|+|||+++|++ +.|++++ |+|+| .++++++++|    |++|.|+    ..++|||+++|+++++++|+++
T Consensus         3 ~v~~si~I~Ap~~~VW~~-l~d~~~~-~~w~p-~v~~~~~~~G----G~vR~~~~~~G~~~~Erl~~~D~~~~~~~y~iv   75 (146)
T 3f08_A            3 HTTTSMEIFGSTEQVWQL-IGGFNSL-PDWLP-YIPSSKLTEG----GRVRHLANPDGETIIERLEVFNDKERYYTYSIM   75 (146)
T ss_dssp             EEEEEEEESSCHHHHHHH-HCSTTCH-HHHCT-TCCEEEEEGG----GTEEEEECTTSCEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEEEeCCHHHHHHH-HhccccH-HHhCC-CeEEEEEeCC----CeEEEEEeCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence            588999999999999998 6999996 99999 5999999876    9999998    6899999999999999999999


Q ss_pred             ecCccCcceEEEEEEEEEEe-cccccccCCCceeeC
Q 044934           81 EEDCISDILELIVFQIKFGP-YKLKKISSNASCLMK  115 (115)
Q Consensus        81 eG~~l~~~~~s~~~~i~v~p-~~~~~~~~~gg~~vk  115 (115)
                      +|++   ++++|..+++|+| .      ++|||.|+
T Consensus        76 ~g~~---~~~~~~~~~~v~p~~------~~~gt~v~  102 (146)
T 3f08_A           76 NAPF---PVTNYLSTIQVKEGT------ESNTSLVE  102 (146)
T ss_dssp             ECSS---SEEEEEEEEEEEECS------STTCEEEE
T ss_pred             cCCC---ceeEEEEEEEEEEec------CCCcEEEE
Confidence            9964   4999999999999 5      57789874

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.88  E-value=2.7e-22  Score=148.01  Aligned_cols=91  Identities=21%  Similarity=0.185  Sum_probs=74.9

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEe-cCCc----cccEEEEc-------eeeeEEEeeecCCc
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQ-GYGE----VGSIEVVS-------TSMQSRVDALDRDN   72 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~e-Gdg~----~Gsir~~t-------~~~kEri~~vDe~~   72 (115)
                      +.....+|+|||+++|++ ++||++ ++.|+| .|+++++.+ |||+    +|+||.|+       ++++|||+.+|+++
T Consensus        31 ~s~~~~~I~Ap~d~VWal-VrdF~~-p~~w~p-~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G~P~~~i~ErL~~lDde~  107 (189)
T 3oji_A           31 TSLIAHRVDAPAHAIWRF-VRDFAN-PNKYKH-FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEK  107 (189)
T ss_dssp             EEEEEEEESSCHHHHHHH-HSCTTC-GGGTCT-TEEEEEECCC----CCCSTTCEEEEEECSSSSBSEEEEEEEEEETTT
T ss_pred             ceeEEEEEcCCHHHHHHH-HhCCCC-hhhCcc-ccceEEEEecCCCCccCCCCcEEEEEecCCCcCceEEEEEEEEeccC
Confidence            344567899999999999 799999 478888 699999998 9886    99999999       48999999999999


Q ss_pred             cEEEEEEEecCccCcceEEEEEEEEEEec
Q 044934           73 LYCKYTVFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        73 ~~~~y~vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      |+++|++++|++.   +++|+++++|.|.
T Consensus       108 ~~~sY~Iieg~~p---v~nY~StitV~~~  133 (189)
T 3oji_A          108 RILSFRVLGGEHR---LNNYRSVTSVNEF  133 (189)
T ss_dssp             TEEEEEEEECSBS---SCSCEEEEEEEEE
T ss_pred             CEEEEEEEecCCc---cccEEEEEEEEec
Confidence            9999999999965   5556666777775

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.88  E-value=1.5e-22  Score=151.58  Aligned_cols=93  Identities=16%  Similarity=0.177  Sum_probs=83.6

Q ss_pred             EEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc-------eeeeEEEeeecCCccEEEEE
Q 044934            7 DKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS-------TSMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         7 ~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t-------~~~kEri~~vDe~~~~~~y~   78 (115)
                      ....+|+|||+++|++ ++||+++ ++|+| .|++|++++||| ++|+||.|+       .+++|||+++|+++|+|+|+
T Consensus        53 ~v~~~I~ApadkVW~l-v~dF~~l-~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDd~~~~~sYs  129 (211)
T 3k3k_A           53 LHAQRIHAPPELVWSI-VRRFDKP-QTYKH-FIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFS  129 (211)
T ss_dssp             EEEEEESSCHHHHHHH-HTCTTCG-GGTCS-SEEEEECCTTCCCCTTCEEEEEESSSSSCEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCHHHHHHH-HhCcCCh-hHcCc-cceEEEEecCCCCCCCcEEEEEecCCCccceEEEEEEEEeccCCEEEEE
Confidence            3455899999999999 6999994 99999 799999999975 899999998       48999999999999999999


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCc
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNAS  111 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg  111 (115)
                      ++||++   +|++|+++++|.|.      ++||
T Consensus       130 Iieg~l---pv~~Y~sti~V~p~------~~gg  153 (211)
T 3k3k_A          130 IIGGEH---RLTNYKSVTTVHRF------EKEN  153 (211)
T ss_dssp             EEEETT---GGGTCEEEEEEEEE------EETT
T ss_pred             EeecCc---ceeEEEEEEEEEEC------CCCC
Confidence            999985   48899999999998      6665

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.85  E-value=2.8e-20  Score=129.18  Aligned_cols=99  Identities=15%  Similarity=0.164  Sum_probs=88.9

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC-CccccEEEEc----eeeeEEEeeecCCccEEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY-GEVGSIEVVS----TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd-g~~Gsir~~t----~~~kEri~~vDe~~~~~~y~v   79 (115)
                      +++.+++|+|||+++|++ +.|++++ |+|+|. ++++++++|+ +++|++|.++    ..++|+|+.+|++++.++|++
T Consensus         3 ~v~~si~I~ap~e~Vw~~-l~d~~~~-~~w~p~-v~~~~~~~g~~~~~G~~r~~~~~~G~~~~e~i~~~d~~~~~~~~~~   79 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTL-VGDFSAI-HRWHPQ-VSAPTLRGASPHTPGAERVFGAGTEEELVERLVERDESARRLVYTM   79 (151)
T ss_dssp             EEEEEEEESSCHHHHHHH-HTTSGGG-GGTCTT-CCCEEEESSCTTSTTCEEEESSSSSSCEEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEEecCCHHHHHHH-HhCcCcH-HHhcCC-ceEEEEECCCCCCCCeEEEEEeCCCCEEEEEEEEEeCCCCEEEEEE
Confidence            789999999999999999 5999996 999996 8999999986 6899999998    489999999999999999999


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|+.   ++++|..+++|+|.      +++||.++
T Consensus        80 ~~g~~---~~~~~~~~~~l~~~------~~~gt~v~  106 (151)
T 2le1_A           80 PDPPF---PITNHRAVLEVVPR------DDRHCTVV  106 (151)
T ss_dssp             EECSS---SEEEEEEEEEEEES------SSSCEEEE
T ss_pred             ecCCC---CceeEEEEEEEEEC------CCCcEEEE
Confidence            99863   48999999999997      67788763

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.82  E-value=9.5e-20  Score=125.31  Aligned_cols=82  Identities=12%  Similarity=0.171  Sum_probs=70.6

Q ss_pred             Ccc-EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEceeeeEEEeeecCCccEEEEEE
Q 044934            1 MGV-LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         1 m~~-~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t~~~kEri~~vDe~~~~~~y~v   79 (115)
                      |+. ++++.++++++||+|+|++| +++ +++| |.|.              |+         +|++++|++|++++|++
T Consensus         1 m~~~g~~~~e~~i~~~a~k~w~~~-~~~-~~~p-~g~~--------------G~---------~~ie~iD~~~~~~~y~i   54 (122)
T 1vjh_A            1 STLKGALSVKFDVKCPADKFFSAF-VED-TNRP-FEKN--------------GK---------TEIEAVDLVKKTMTIQM   54 (122)
T ss_dssp             CCSEEEEEEEEEESSCHHHHHHHH-HHH-TTSC-SSTT--------------CE---------EEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEEEEecCCHHHHHHHH-hhc-ccCC-ccCC--------------Cc---------cEEEEEecccCEEEEEE
Confidence            676 89999999999999999995 666 4568 6442              21         19999999999999999


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccC-CCceeeC
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISS-NASCLMK  115 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~-~gg~~vk  115 (115)
                      +||+++ ++|++|+++++|+|+      + +|||+||
T Consensus        55 ieGd~~-~~~~~~~~~~~v~~~------~~~~gs~vk   84 (122)
T 1vjh_A           55 SGSEIQ-KYFKTLKGSIAVTPI------GVGDGSHVV   84 (122)
T ss_dssp             ECTTGG-GTEEEEEEEEEEEEC------SSSSCEEEE
T ss_pred             EEcccc-ccEEEEEEEEEEEEe------cCCCCeEEE
Confidence            999987 799999999999998      6 7899885

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.26  E-value=1.6e-10  Score=81.91  Aligned_cols=99  Identities=13%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc------eeeeEEEeeecCCccEEE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS------TSMQSRVDALDRDNLYCK   76 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t------~~~kEri~~vDe~~~~~~   76 (115)
                      ..+++.++.|++||+++|+. +.|+.++ |.|+|. +.++++++++++.-.++.+.      .....++. +|+.++.+.
T Consensus         4 M~~v~~si~I~ap~~~V~~~-v~D~~~~-p~~~P~-~~~~~v~~~~~~~~~~~~~~~~~G~~~~~~s~~~-~~~~~~~i~   79 (172)
T 3tfz_A            4 MRHVEHTVTVAAPADLVWEV-LADVLGY-ADIFPP-TEKVEILEEGQGYQVVRLHVDVAGEINTWTSRRD-LDPARRVIA   79 (172)
T ss_dssp             CEEEEEEEEESSCHHHHHHH-HHCGGGH-HHHCSS-EEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-EETTTTEEE
T ss_pred             CcEEEEEEEeCCCHHHHHHH-HHhHHHH-HhhCcc-cceEEEEecCCCEEEEEEEEecCCEEEEEEEEEE-EeCCCCEEE
Confidence            45789999999999999999 7999995 999995 99999998754221223222      23344444 788899999


Q ss_pred             EEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           77 YTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        77 y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      |++++++.   +++.+....+|.|.      +++||.|
T Consensus        80 ~~~~~~~g---pf~~~~g~w~f~~~------~~~~t~V  108 (172)
T 3tfz_A           80 YRQLETAP---IVGHMSGEWRAFTL------DAERTQL  108 (172)
T ss_dssp             EEEEECCT---TEEEEEEEEEEEEE------ETTEEEE
T ss_pred             EEEeeCCC---ChhhcEEEEEEEEC------CCCcEEE
Confidence            99998653   47888888999998      6788976

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.20  E-value=4.4e-10  Score=79.76  Aligned_cols=96  Identities=13%  Similarity=0.115  Sum_probs=77.0

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEE---c-----eeeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV---S-----TSMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~---t-----~~~kEri~~vDe~~~~~   75 (115)
                      ..++.++.|++||+++|++ +.|+.++ |.|+|. +.++++++++|..-.+|.+   .     .....+. .+|++++.+
T Consensus         3 ~~v~~si~I~a~~~~V~~l-V~Dve~y-P~~~p~-~~~~~vl~~~~~~~~~rl~~~~~~~G~~~~~ts~~-~~d~~~~~I   78 (159)
T 3tl1_A            3 GHTDNEITIAAPMELVWNM-TNDIEKW-PGLFSE-YASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSER-VADPVTRTV   78 (159)
T ss_dssp             SEEEEEEEESSCHHHHHHH-HTCGGGH-HHHCSS-EEEEEEEEECSSEEEEEEEECCCTTSCCCEEEEEE-EEETTTTEE
T ss_pred             CeeEEEEEecCCHHHHHHH-HHhHHHh-hhhhhC-ceEEEEEecCCCEEEEEEEEEeccCceEEEEEEEE-EEcCCCCEE
Confidence            3688999999999999999 7999995 999995 9999999888755566765   2     3333443 489999999


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|+.++.+    +++++..+.+|+|.      ++ ||.|
T Consensus        79 ~~~~~~~g----Pf~~l~g~W~f~p~------~~-gt~V  106 (159)
T 3tl1_A           79 RAQRVETG----PFQYMNIVWEYAET------AE-GTVM  106 (159)
T ss_dssp             EEEESSCT----TEEEEEEEEEEEEE------TT-EEEE
T ss_pred             EEEEccCC----ChhhccCEEEEEEC------CC-CEEE
Confidence            99987433    37889999999998      55 7876

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.18  E-value=6.2e-10  Score=73.78  Aligned_cols=93  Identities=16%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLYCKY   77 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~~~y   77 (115)
                      +++.+++|++|++++|++ +.|+.++ |+|+|. +.+++++++++ .|....|+       ..+..++. .++.++.+.|
T Consensus         3 ~~~~~~~i~ap~~~V~~~-l~d~~~~-~~w~p~-~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~   77 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRL-AKDLEGL-KPYLKE-VESLEVVAREG-ARTRSRWVAVAMGKKVRWLEEEE-WDDENLRNRF   77 (147)
T ss_dssp             EEEEEEEESSCHHHHHHH-HHCHHHH-GGGCTT-EEEEEEEEEET-TEEEEEEEEEETTEEEEEEEEEE-EETTTTEEEE
T ss_pred             eEEEEEEeCCCHHHHHHH-HhChhhh-hhhccc-ccEEEEEEeCC-CccEEEEEEEeCCceEEEEEEEE-EcCCCcEEEE
Confidence            678899999999999999 5999985 999995 78888887643 24444444       23444544 4577889999


Q ss_pred             EEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           78 TVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        78 ~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ++.+|+.     +.+..+.+|+|.      ++| |.+
T Consensus        78 ~~~~g~~-----~~~~~~~~~~~~------~~g-T~v  102 (147)
T 2d4r_A           78 FSPEGDF-----DRYEGTWVFLPE------GEG-TRV  102 (147)
T ss_dssp             EEEEESC-----SEEEEEEEEEEC------SSS-EEE
T ss_pred             EeccCCh-----hheEEEEEEEEC------CCC-cEE
Confidence            9988753     455678888998      554 765

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.17  E-value=5.7e-10  Score=78.77  Aligned_cols=95  Identities=6%  Similarity=0.045  Sum_probs=74.0

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~   78 (115)
                      ..+++.+++|+|||+++|++ +.|+.++ |.|.|. +.++++ +|.-.+|+.+.++    ..+..+|..+|+..+ +++.
T Consensus        17 ~~~i~~si~I~Appe~VW~~-ltD~~~~-~~W~p~-v~~~~~-~G~~~~G~~~~~~~~~~~~~~~~v~~~~p~~~-~~~~   91 (155)
T 3ijt_A           17 SMKFSFELAVNTKKEDAWTY-YSQVNQW-FVWEGD-LEQISL-EGEFTTGQKGKMKMEDMPELAFTLVEVRENQC-FSDL   91 (155)
T ss_dssp             CEEEEEEEEESSCHHHHHHH-HHCGGGG-GGTSTT-EEEEEE-SSSSSTTCEEEEEETTSCCEEEEECCCBTTTE-EEEE
T ss_pred             cEEEEEEEEEcCCHHHHHHH-HhCcccc-cccchh-hEeeec-cCCCCCCCEEEEEeCCCCcEEEEEEEEeCCcE-EEEE
Confidence            35889999999999999999 5999995 999996 888874 5766889888877    578889999998876 6675


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .--  +    ...+..+..++|.      ++|||.+
T Consensus        92 ~~~--p----~~~~~~~h~l~p~------~~ggTrv  115 (155)
T 3ijt_A           92 TAT--P----FGNVLFEHEILEN------PDGTISL  115 (155)
T ss_dssp             EEE--T----TEEEEEEEEEEEC------TTSCEEE
T ss_pred             Eec--C----CeEEEEEEEEEEc------CCCcEEE
Confidence            432  1    2245566688887      6778865

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.13  E-value=8.5e-10  Score=79.01  Aligned_cols=97  Identities=12%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEE---c-----eeeeEEEeeecCCccE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVV---S-----TSMQSRVDALDRDNLY   74 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~---t-----~~~kEri~~vDe~~~~   74 (115)
                      ...++.++.|++||+++|++ +.|+.++ |.|+|. +.+++++++++..-..+.+   .     .....+. .+|++++.
T Consensus         2 a~~v~~si~I~a~~~~v~~l-v~Dv~~~-p~w~p~-~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ts~~-~~d~~~~~   77 (169)
T 3tvq_A            2 AARTDNSIVVNAPFELVWDV-TNDIEAW-PELFSE-YAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSHR-VPDKGSRT   77 (169)
T ss_dssp             CEEEEEEEEESSCHHHHHHH-HTCGGGH-HHHCTT-EEEEEEEEEETTEEEEEEEECCCTTSCCCEEEEEE-EEEGGGTE
T ss_pred             CCeEEEEEEecCCHHHHHHH-HHhhhHH-HHHHhh-eeEEEEEecCCCEEEEEEEEEecCCCeEEEEEEEE-EEcCCCcE
Confidence            45789999999999999999 7999995 999995 8999999886532223332   1     2222332 38899999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.|+.++++    +++.+..+.+|+|.      ++| |.|
T Consensus        78 I~~~~l~~g----Pf~~~~g~W~f~p~------~~g-t~V  106 (169)
T 3tvq_A           78 VRAHRVETG----PFAYMNLHWTYRAV------AGG-TEM  106 (169)
T ss_dssp             EEEEESSCT----TEEEEEEEEEEEEE------TTE-EEE
T ss_pred             EEEEEcCCC----ChhheeeEEEEEEC------CCC-EEE
Confidence            999986543    37788899999998      555 876

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=98.78  E-value=3.8e-08  Score=67.33  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=70.2

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC--C-ccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY--G-EVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd--g-~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      +++.++.|++|++++|++ +.|..++ |+|+|. ++++++++.+  | +.+....|+       ..+..|+. +|+.+..
T Consensus         3 ~~~~s~~i~ap~~~v~~~-v~D~~~~-p~~~p~-~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~   78 (148)
T 1t17_A            3 RHVVTKVLPYTPDQLFEL-VGDVDAY-PKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDARS   78 (148)
T ss_dssp             EEEEEEEESSCTHHHHHH-HTTTTCC-SSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTCE
T ss_pred             EEEEEEEecCCHHHHHHH-HHHHhhH-HhhCCC-cCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEE-EcCCCcE
Confidence            678899999999999999 7999995 999996 7778888642  2 133444444       45566766 5777778


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.++.++|+     ++.+....+|+|.      ++| |.+
T Consensus        79 i~~~~~~G~-----f~~~~g~w~f~~~------~~g-t~v  106 (148)
T 1t17_A           79 IDVSLLYGP-----FKRLNNGWRFMPE------GDA-TRV  106 (148)
T ss_dssp             EEEEESSTT-----SSCEEEEEEEEEE------TTE-EEE
T ss_pred             EEEEECCCC-----hhccEEEEEEEEC------CCC-eEE
Confidence            999999874     3456677888887      554 865

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=98.71  E-value=6.5e-08  Score=67.16  Aligned_cols=95  Identities=11%  Similarity=0.100  Sum_probs=64.4

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCc------c-c-cEEEEceeeeEEEeeecCCc
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGE------V-G-SIEVVSTSMQSRVDALDRDN   72 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~------~-G-sir~~t~~~kEri~~vDe~~   72 (115)
                      ||..+++.++.|++|++++|+. +.|+.+ +|+|+|. +.+++++++++.      + | .-..    ..-++..+ +.+
T Consensus         1 ~~~~~v~~s~~I~ap~e~V~~~-~~D~e~-~p~w~p~-~~~v~~~~~~~~~~~~~~~~G~~~~~----~~~~v~e~-~p~   72 (155)
T 3ggn_A            1 MGETVVRDAVTIGKPAEQLYAV-WRDLPG-LPLLMTH-LRSVEVLDDKRSRWTVEAPAPLGTVS----WEAELTAD-EPG   72 (155)
T ss_dssp             ---CEEEEEEEESSCHHHHHHH-HHCGGG-HHHHSTT-CCEEEECSSSEEEEEEECCTTTCEEE----EEEEEEEE-ETT
T ss_pred             CCccEEEEEEEEcCCHHHHHHH-HhCHHH-hHHHhhh-ceEEEEecCCeeEEEEEecCCcceEE----EEEEEEEe-cCC
Confidence            8899999999999999999999 699999 4999996 889988865321      1 2 1112    23344433 456


Q ss_pred             cEEEEEEEecCccCcceEEEEEEEEEEecccccccC-CCceee
Q 044934           73 LYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISS-NASCLM  114 (115)
Q Consensus        73 ~~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~-~gg~~v  114 (115)
                      +.+.++..+|...     .+..+++|+|.      + ++||.|
T Consensus        73 ~~i~~~~~~g~~~-----~~~g~~~F~~~------~~~~gT~V  104 (155)
T 3ggn_A           73 KRIAWRSLPGARI-----ENSGEVLFRPA------PGARGTEV  104 (155)
T ss_dssp             TEEEEEECTTCSS-----CEEEEEEEEEC------SSSSCEEE
T ss_pred             CEEEEEECCCCCc-----ceEEEEEEEEC------CCCCceEE
Confidence            6788999887532     34556677776      4 457865

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=98.67  E-value=3.7e-07  Score=62.09  Aligned_cols=96  Identities=13%  Similarity=0.238  Sum_probs=60.8

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEE----EceeeeE--EEeeecCCccEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEV----VSTSMQS--RVDALDRDNLYCKYT   78 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~----~t~~~kE--ri~~vDe~~~~~~y~   78 (115)
                      +++.++.|++|++++|++ +.|+.++ |+|+|. +.+++ .+|++-...++.    +...+.-  ++..+|+. +.+.|+
T Consensus        14 ~i~~~~~i~ap~e~Vw~~-l~D~~~~-~~w~p~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~i~~~   88 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEF-LTDPKRF-SRAFPG-FKSVE-VEDGSFTIELRLSLGPLRGDARVRASFEDLEKP-SKATVK   88 (157)
T ss_dssp             EEEEEEEESSCHHHHHHH-HTCHHHH-GGGSTT-EEEEE-EETTEEEEEEEEESSSSEEEEEEEEEEEEEETT-TEEEEE
T ss_pred             EEeeEEEEcCCHHHHHHH-HcCHHHH-HhhCCC-ceEEE-ECCCEEEEEEEEEEcceeEEEEEEEEEEecCCC-cEEEEE
Confidence            789999999999999999 5999884 999996 67888 555431111111    0122333  44456654 456676


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .-..+.. ...+ +..+++++|.      + +||.+
T Consensus        89 ~~~~~~~-~~~~-~~~~~~l~~~------~-~gT~v  115 (157)
T 2ns9_A           89 GSGRGAG-STLD-FTLRFAVEPS------G-GGSRV  115 (157)
T ss_dssp             EEEECSS-EEEE-EEEEEEEEEE------T-TEEEE
T ss_pred             EEecCCC-ccEE-EEEEEEEEeC------C-CcEEE
Confidence            4321211 2333 6788999998      5 67865

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=98.65  E-value=5.2e-07  Score=62.13  Aligned_cols=98  Identities=10%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEE-Ec---eeeeE--EEeeecCCccEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEV-VS---TSMQS--RVDALDRDNLYCKYT   78 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~-~t---~~~kE--ri~~vDe~~~~~~y~   78 (115)
                      +++.++.|++|++++|++ +.|+.+ +|+|+|. +.+++..+|++-...++. +.   ..+.-  ++..+|+. +.+.++
T Consensus         4 ~i~~~~~i~ap~e~Vw~~-l~D~e~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~   79 (162)
T 2pcs_A            4 NGNGSIELKGTVEEVWSK-LMDPSI-LSKCIMG-CKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPP-YHYKLL   79 (162)
T ss_dssp             EEEEEEEEESCHHHHHHH-HTCHHH-HHHHSTT-EEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETT-TEEEEE
T ss_pred             EEeeEEEecCCHHHHHHH-hcCHHH-HHhhCCC-ceEeEEeCCCeEEEEEEEEeeeEEEEEEEEEEEEecCCC-cEEEEE
Confidence            588999999999999999 599988 4999996 788888755431111111 00   22323  55556664 355555


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ....+.  .....+..+++|+|.      ++|||.+
T Consensus        80 ~~~~~~--~~~~~~~~~~~l~~~------~~~gT~v  107 (162)
T 2pcs_A           80 VNGEGG--PGFVNAEGVIDLTPI------NDECTQL  107 (162)
T ss_dssp             EEEEET--TEEEEEEEEEEEEES------SSSEEEE
T ss_pred             EEecCC--CccEEEEEEEEEEec------CCCcEEE
Confidence            542111  223456788999995      4667865

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.37  E-value=1e-06  Score=59.64  Aligned_cols=87  Identities=10%  Similarity=0.036  Sum_probs=61.4

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCCccEEEEEEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      .+++.++.|+||++++|++ +.|+.. +++|.|.       .+++..+|..-.+.   +.+.-++..+|+. +.+.|+..
T Consensus         8 ~~i~~~~~i~ap~e~Vw~~-ltd~~~-~~~W~~~-------~~~~~~~G~~~~~~~~~g~~~~~v~e~~p~-~~l~~~~~   77 (143)
T 1xn6_A            8 NDIKQTIVFNASIQKVWSV-VSTAEG-IASWFMP-------NDFVLEVGHEFHVQSPFGPSPCKVLEIDEP-NHLSFSWD   77 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHT-TSCSHH-HHTTSCC-------BCCCCCTTCEECBCCTTCCCCEEEEEEETT-TEEEEEET
T ss_pred             CEEEEEEEEcCCHHHHHHH-HhCHhH-HHHhcCC-------CCcCcCCCCEEEEEEcCCCceEEEEEEeCC-CEEEEEEe
Confidence            4688999999999999999 589877 5999996       23454556554444   3467778888874 55677764


Q ss_pred             ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           81 EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        81 eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .+        ....+++|+|.      ++|||.+
T Consensus        78 ~~--------~~~~~~~l~~~------~~g~T~l   97 (143)
T 1xn6_A           78 TD--------GWVVSFDLKDL------GDNKTEF   97 (143)
T ss_dssp             TT--------TEEEEEEEEEE------ETTEEEE
T ss_pred             CC--------CEEEEEEEEEC------CCCcEEE
Confidence            33        34567788887      5557754

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=98.33  E-value=4.6e-06  Score=58.26  Aligned_cols=95  Identities=11%  Similarity=0.134  Sum_probs=64.8

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEE--EEc-------eeeeEEEeeecCCccE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIE--VVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir--~~t-------~~~kEri~~vDe~~~~   74 (115)
                      .+++.++.|++||+++|++ +.|..+ +|.+.|+...-.+ . ++| ....+  .+.       .....|++ .|++++.
T Consensus         7 i~v~~s~~I~ap~e~v~~l-v~Dve~-w~~~yp~~~p~~~-~-~~~-~~~~~~a~l~vg~~~~~~~~~s~~~-~~~~~~~   80 (161)
T 3p9v_A            7 IELNRDLEIPASYDEVFDL-LADVPK-SASHFPKVDKLVD-L-GNN-AYRWEMEKVGVDKHAIQSVYACTYH-ADKEAGK   80 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHH-HTCHHH-HHTTSTTEEEEEE-E-ETT-EEEEEECCBSSGGGCBCCEEEEEEE-EETTTTE
T ss_pred             EEEEEEEEEcCCHHHHHHH-HhChhh-hHhhCCCeEEEEE-c-CCC-ceEEEEEEEeeeeEEEEEEEEEEEE-EcCCCCE
Confidence            5788899999999999999 799998 4777776443322 2 333 11111  122       24445544 6777889


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.++.++|+.    .++...+.+|+|.      ++|+|.|
T Consensus        81 I~~~~~~g~~----~~~l~g~w~f~p~------~~g~t~V  110 (161)
T 3p9v_A           81 ITWSPIKGEG----NGVVSGSWTLSAK------GDNATAV  110 (161)
T ss_dssp             EEEEECTTST----TEEEEEEEEEEES------SSSCEEE
T ss_pred             EEEEEecCcc----ceeEEEEEEEEEC------CCCeEEE
Confidence            9999998764    2566678889998      7777866

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=98.19  E-value=3.6e-05  Score=51.39  Aligned_cols=99  Identities=18%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---------eeeeEEEeeecCCccE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---------~~~kEri~~vDe~~~~   74 (115)
                      .++..++.|+||++++|++ +.|... +++|.|..--.+...++|..+|..-.+.         ....-++..+++. +.
T Consensus         3 ~~~~~~~~i~ap~e~Vw~a-ltd~~~-~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~~~~~~~~v~~~~p~-~~   79 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRA-FLDPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPG-ER   79 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHH-TTCHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETT-TE
T ss_pred             cEEEEEEEeCCCHHHHHHH-hCCHHH-HhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCCEEEEEEEEEEEcCC-CE
Confidence            3578889999999999999 589777 5999975312223345665566544432         2356677878764 55


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.|+...++.-...  ....++.|+|.      + +||.+
T Consensus        80 l~~~~~~~~~~~~~--~~~~~~~l~~~------~-~gT~l  110 (147)
T 1z94_A           80 IRYTDRFDDAGLPG--DMITTITLAPL------S-CGADL  110 (147)
T ss_dssp             EEEEEEESCCC-----CEEEEEEEEEE------T-TEEEE
T ss_pred             EEEEEEEeCCCCCC--cEEEEEEEEec------C-CCEEE
Confidence            67877654321111  34667888887      4 46754

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.14  E-value=2.7e-05  Score=52.17  Aligned_cols=84  Identities=13%  Similarity=0.209  Sum_probs=57.9

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-----eeeeEEEeeecCCccEEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-----TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-----~~~kEri~~vDe~~~~~~y~v   79 (115)
                      +++.++.|+||++++|+++ .|+.. +++|.|..      .+++-.+|..-.+.     ....-++..+++.+ .+.|+.
T Consensus         2 ~i~~~~~i~ap~e~Vw~al-td~~~-~~~W~~~~------~~~~~~~Gg~~~~~~~~~~~~~~~~v~~~~p~~-~l~~~~   72 (135)
T 3q6a_A            2 DIITKMQVDVPRETVFEAF-VDPEK-IGGFWFSS------SSERWEQGKTITLRYEEYDAELNINIERVEDNQ-LIAFTW   72 (135)
T ss_dssp             CEEEEEEESSCHHHHHHHH-HCTTT-GGGTSSSE------ESSCCCTTCEEEEECGGGTC-CEEEEEEEETTT-EEEEEE
T ss_pred             eEEEEEEeCCCHHHHHHHH-cCHHH-hcccCCCC------CcccccCCCEEEEEEcCcCceEEEEEEEEcCCC-EEEEEE
Confidence            4788999999999999994 89887 59997642      34666677665554     23344677777654 456766


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ..|          ..++.++|.       ++||.+
T Consensus        73 ~~g----------~~~~~l~~~-------~~gT~l   90 (135)
T 3q6a_A           73 GAH----------PITIQFEES-------EAGTVV   90 (135)
T ss_dssp             TTE----------EEEEEEEEE-------TTEEEE
T ss_pred             cCC----------eEEEEEEEC-------CCCEEE
Confidence            421          677888887       456754

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=98.10  E-value=4.1e-05  Score=50.83  Aligned_cols=90  Identities=11%  Similarity=0.061  Sum_probs=58.0

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----e---eeeEEEeeecCCccEEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----T---SMQSRVDALDRDNLYCK   76 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~---~~kEri~~vDe~~~~~~   76 (115)
                      .+++.++.|+||++++|++ +.|+.+ +++|.+...     .+++-.+|..-.+.    +   .+..++..+++. +.+.
T Consensus         5 ~~i~~~~~i~ap~e~Vw~~-ltd~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~-~~l~   76 (146)
T 2leq_A            5 LIAQVKTVINAPIEKVWEA-LVNPEI-IKEYMFGTT-----VVSDWKEGSQIVWKGEWKGKAYEDKGTILQFNER-SILQ   76 (146)
T ss_dssp             EEEEEEEEECSCHHHHHHH-HSCTTH-HHHHSSSCE-----EECCCSTTCEEEEEEEETTEEEEEEEEEEEEETT-TEEE
T ss_pred             ceEEEEEEECCCHHHHHHH-HcCHHH-hceeEcCCc-----ceeccCCCCEEEEEecCCCceecccEEEEEEcCC-CEEE
Confidence            5789999999999999999 599887 599963222     23554566554454    2   567788888874 4566


Q ss_pred             EEEEec-Ccc-CcceEEEEEEEEEEec
Q 044934           77 YTVFEE-DCI-SDILELIVFQIKFGPY  101 (115)
Q Consensus        77 y~vieG-~~l-~~~~~s~~~~i~v~p~  101 (115)
                      |+.... +.+ ...-.....++.|+|.
T Consensus        77 ~~~~~~~~g~~~~~~~~~~~~~~l~~~  103 (146)
T 2leq_A           77 YSHFSPLTGKPDLPENYHVVTITLTAL  103 (146)
T ss_dssp             EECBCGGGCCCSCGGGSCEEEEEEEEC
T ss_pred             EEEccCccCCCCCCCCceEEEEEEEEc
Confidence            776432 000 0011234567788887

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.09  E-value=5.3e-05  Score=51.15  Aligned_cols=90  Identities=8%  Similarity=0.043  Sum_probs=59.8

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccc-cccceeeEEEEecCCccccEEEEc-----e----eeeEEEeeecCCccE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKL-LPQAFKSIVYEQGYGEVGSIEVVS-----T----SMQSRVDALDRDNLY   74 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~-~P~~v~sve~~eGdg~~Gsir~~t-----~----~~kEri~~vDe~~~~   74 (115)
                      ++..++.|+||++++|++ +.|... +++| .+..--.+...++|..+|..-.+.     +    .+.-++..+++. +.
T Consensus         2 ~i~~~~~i~ap~e~Vw~a-ltd~~~-~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p~-~~   78 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRA-YTTPED-IKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVEN-KR   78 (142)
T ss_dssp             EEEEEEEESSCHHHHHHH-TTCHHH-HHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETT-TE
T ss_pred             eEEEEEEeCCCHHHHHHH-hCCHHH-HhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcCC-CE
Confidence            578899999999999999 589777 5899 653212233445666666654433     1    256677778764 45


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.|+. .|         ...++.|+|.      + +||.+
T Consensus        79 l~~~~-~g---------~~~~~~l~~~------~-~gT~l  101 (142)
T 2lcg_A           79 IEYAF-GD---------RTAKVEFLEA------P-QGVTV  101 (142)
T ss_dssp             EEEEE-TT---------EEEEEEEEEE------T-TEEEE
T ss_pred             EEEEc-CC---------CEEEEEEEEc------C-CCEEE
Confidence            66775 11         5667888887      4 56754

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.08  E-value=6.1e-05  Score=52.16  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=64.1

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~~~   75 (115)
                      .+++.++.|+||++++|++ +.|... +++|.+..--.+...++|..+|..-.+.     +   ...-++..+++. +.+
T Consensus        14 ~~i~~~~~i~ap~e~Vw~a-ltdp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~-~rl   90 (171)
T 2il5_A           14 VEVEIEKLYKFSPELVYEA-WTKKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMD-EYV   90 (171)
T ss_dssp             EEEEEEEEESSCHHHHHHH-TTCHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETT-TEE
T ss_pred             ceEEEEEEeCCCHHHHHHH-HCCHHH-HHhccCCCCccceEEEecccCCCEEEEEEECCCCCEEEEEEEEEEEcCC-CEE
Confidence            5788999999999999999 588776 4889864222233455676666554443     1   356677878764 456


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|+.-.++.. ..  ....++.|+|.      ++|||.+
T Consensus        91 ~~~~~~~~~~-~~--~~~~~~~l~~~------~~g~T~l  120 (171)
T 2il5_A           91 KMTIGMPGLS-ET--QDVIEVEFFER------ETGGTQM  120 (171)
T ss_dssp             EEEESCC--C-CC--CEEEEEEEEEC------SSSSEEE
T ss_pred             EEEEEecCCC-CC--cEEEEEEEEEC------CCCCEEE
Confidence            6776543311 12  35677888897      5557754

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.07  E-value=0.0001  Score=51.78  Aligned_cols=100  Identities=11%  Similarity=-0.006  Sum_probs=63.4

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~~~   75 (115)
                      .++..++.|+||++++|++| .|... +++|.+..--.+...++|..+|..-.+.     +   ...-++..+++.+ .+
T Consensus        22 ~~i~~~r~i~Ap~e~Vw~al-tdpe~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~-rl   98 (178)
T 1xuv_A           22 QEIIITREFDAPRELVFKAF-TDPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPE-RI   98 (178)
T ss_dssp             SEEEEEEEESSCHHHHHHHH-HCHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-EE
T ss_pred             cEEEEEEEECCCHHHHHHHh-CCHHH-HHhCCCCCCccceEEEEecccCCEEEEEEECCCCCEEEEEEEEEEEeCCC-EE
Confidence            46888999999999999995 89777 5899753211233445666566554433     1   3566788888754 45


Q ss_pred             EEEEEecC-ccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEED-CISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~-~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|+.--++ +....  ....++.|+|.      ++|||.+
T Consensus        99 ~~~~~~~~~~~~~~--~~~v~~~l~~~------~~ggT~l  130 (178)
T 1xuv_A           99 ISTFEFEGLPEKGH--VILDTARFEAL------PGDRTKL  130 (178)
T ss_dssp             EEEEEETTSSSSCC--CEEEEEEEEEE------TTTEEEE
T ss_pred             EEEEEecCCCCCCC--cEEEEEEEEEc------CCCCEEE
Confidence            56654332 21011  35667888898      5467765

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=97.94  E-value=5.4e-05  Score=51.51  Aligned_cols=81  Identities=14%  Similarity=0.082  Sum_probs=55.7

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCCccEEEEEE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~~~~~~y~v   79 (115)
                      ..+++.++.|+||++++|++ +.|+.. +++|.|..       +++..+|..-.+.   +.+.-++..+++.+ .+.|+.
T Consensus         4 ~~~i~~~~~i~Ap~e~Vw~a-ltd~~~-~~~W~~~~-------~~~~~~Gg~~~~~~~~g~~~~~v~e~~p~~-~l~~~~   73 (146)
T 1xn5_A            4 LPDIKKEVRFNAPIEKVWEA-VSTSEG-LAFWFMEN-------DLKAETGHHFHLQSPFGPSPCQVTDVERPI-KLSFTW   73 (146)
T ss_dssp             CCCEEEEEEESSCHHHHHHH-TTSHHH-HHTTSCCB-------CCCSCTTCEEEEECSSCEEEEEEEEEETTT-EEEEEE
T ss_pred             CcEEEEEEEEcCCHHHHHHH-HhChhH-HHHhcCCC-------CCCccCCCEEEEEecCCceEEEEEEEeCCc-EEEEEE
Confidence            35688999999999999999 589877 59999852       3454566554443   45677788888754 555665


Q ss_pred             EecCccCcceEEEEEEEEEEec
Q 044934           80 FEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      .. .       ....++.|+|.
T Consensus        74 ~~-~-------~~~~~~~l~~~   87 (146)
T 1xn5_A           74 DT-D-------GWSVTFHLKEE   87 (146)
T ss_dssp             TT-T-------TEEEEEEEEEC
T ss_pred             eC-C-------CEEEEEEEEEc
Confidence            32 1       13456777887

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=97.93  E-value=0.00027  Score=49.09  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=62.0

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~~~   75 (115)
                      .++..++.|+||++++|++| .|... +++|.+..=-.+...++|..+|..-.+.     +   ...-++..+++.++ +
T Consensus        12 ~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~v~e~~p~~r-l   88 (172)
T 2ldk_A           12 LSFSIVAEFDADVKRVWAIW-EDPRQ-LERWWGPPTWPATFETHEFTVGGKAAYYMTGPDGTKARGWWQFTTIEAPDH-L   88 (172)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-HCHHH-HHTTSSCTTSCEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEECSSSE-E
T ss_pred             ceEEEEEEeCCCHHHHHHHh-CCHHH-HHhccCCCCcccceEEEeecCCCEEEEEEECCCCCEEeeEEEEEEEcCCCE-E
Confidence            46888999999999999995 88776 4888653211233445676666544332     1   36778888887554 4


Q ss_pred             EEEEEecCccC---cceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCIS---DILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~---~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|+.-.++..+   ........++.|+|.       +|||.+
T Consensus        89 ~~~~~~~~~~g~p~~~~~~~~v~~~l~~~-------~~gT~l  123 (172)
T 2ldk_A           89 EFDDGFADEHGAPVDELGVTHATVKLEPL-------ENRTRM  123 (172)
T ss_dssp             EEEEEEBCSSCCBCTTTCEEEEEEEEEEE-------TTEEEE
T ss_pred             EEEEeecCCCCCccCCCccEEEEEEEEEc-------CCCEEE
Confidence            56654322110   111245667888887       456754

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=97.90  E-value=0.00036  Score=48.55  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=61.7

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCccE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNLY   74 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~~   74 (115)
                      -.++..++.|+||++++|++| .|... +++|.+..--.+...++|..+|..-.+.     +   .+.-++..+++..+ 
T Consensus        12 ~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~r-   88 (164)
T 3pu2_A           12 ATRLEFRRHFAATPEQLWAAL-TSPAL-LPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRTRGLTGRVILAEPPHR-   88 (164)
T ss_dssp             TTEEEEEEEESSCHHHHHHHH-HCTTT-GGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTTE-
T ss_pred             CceEEEEEEECCCHHHHHHHh-cCHHH-HhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCEEEEEEEEEEEcCCCE-
Confidence            346888999999999999995 88777 5899874222233455676666543322     2   46677787877544 


Q ss_pred             EEEEEE-ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           75 CKYTVF-EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        75 ~~y~vi-eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.|+.- .++.. ..  .-..++.|+|.      + +||.+
T Consensus        89 l~~t~~~~~~~~-~~--~s~vt~~l~~~------~-~gT~l  119 (164)
T 3pu2_A           89 LIHSELYDEDWT-GG--ETLVTLQLLPV------E-GGTEL  119 (164)
T ss_dssp             EEEEEBCC---C-CS--CEEEEEEEEEE------T-TEEEE
T ss_pred             EEEEEeccCCCC-CC--CEEEEEEEEEc------C-CCEEE
Confidence            446553 22111 11  25677888887      4 56765

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=97.85  E-value=1.9e-05  Score=54.36  Aligned_cols=96  Identities=11%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--e--eeeEEEeeecCCccEEEEE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--T--SMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--~--~~kEri~~vDe~~~~~~y~   78 (115)
                      ..+++.++.|+||++++|++ +.|... +++|.|. ..     +++-.+|..-.++  +  .+..++..+++ ++.+.|+
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~a-ltdp~~-~~~W~~~-~~-----~~~~~~Gg~~~~~~~g~~~~~~~v~e~~p-~~~l~~~   78 (160)
T 2lak_A            8 SFVVRREAHLAAPPAAVFAL-MTDPEK-ILRWMGT-EA-----EVEPEPGGLYLVNVTGARFARGSFREVVP-VHRLAYS   78 (160)
T ss_dssp             CCEEEEEEEESSCHHHHHHH-HHCHHH-HHHTSCS-SE-----EESCSTTCCEEECSSTTCCSSCCEEEEET-TTEEEEC
T ss_pred             CceEEEEEEeCCCHHHHHHH-hcChHH-HhhhCCC-cc-----eeeccCCCEEEEEEeCCceEEEEEEEEcC-CCEEEEE
Confidence            35789999999999999999 589777 5999986 22     2343444433343  2  35567777776 4455666


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ...++.-...-.....++.|+|.      + +||.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~------~-~gT~l  107 (160)
T 2lak_A           79 FGWDGSEVVPPGSSLVEIDLIEQ------G-GGTLL  107 (160)
T ss_dssp             CCCCSSSCCCTTSCEEEEEEEEC------S-SSEEE
T ss_pred             EEecCCCCCCCCcEEEEEEEEEC------C-CCEEE
Confidence            54332100011135567888887      4 46754

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=97.84  E-value=0.00031  Score=48.55  Aligned_cols=98  Identities=14%  Similarity=0.173  Sum_probs=61.2

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccc--eeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCc
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQA--FKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDN   72 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~--v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~   72 (115)
                      -.++..+..|+||++++|++| .|... +++|.+..  +. +...++|..+|..-.+.     +   .+.-++..+++.+
T Consensus         7 ~~~i~~~r~i~Ap~e~Vw~al-tdp~~-~~~W~~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~   83 (161)
T 3rd6_A            7 HSTFTIERTYPQSPDRVFHAF-ADKAT-VRRWRVDGDGFT-VAEFSFDFRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQ   83 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHH-HCHHH-HHHHTCCCCC----CEEEECCSTTCEEEEEECSTTSCCEEEEEEEEEEETTT
T ss_pred             CceEEEEEEECCCHHHHHHHh-cCHHH-HhhccCCCCCce-eeEEEEccCcCCEEEEEEECCCCCEEEEEEEEEEEcCCC
Confidence            467888999999999999995 88776 58998532  22 22245665555443332     2   3667788888755


Q ss_pred             cEEEEEEEe--cCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           73 LYCKYTVFE--EDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        73 ~~~~y~vie--G~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      + +.|+..-  .+.   +......++.|+|.      + +||.+
T Consensus        84 r-l~~~~~~~~~~~---~~~~s~v~~~l~~~------~-~gT~l  116 (161)
T 3rd6_A           84 R-IVFSYRMAIGPQ---PMSASLTTVELTPS------G-DGTRL  116 (161)
T ss_dssp             E-EEEEEEEEETTE---EEEEEEEEEEEEEE------T-TEEEE
T ss_pred             E-EEEEEEecCCCC---CCCceEEEEEEEEC------C-CCEEE
Confidence            4 4455431  121   23345578888887      4 46764

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=97.84  E-value=1.4e-05  Score=54.89  Aligned_cols=80  Identities=13%  Similarity=0.046  Sum_probs=53.2

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCCccEEEEEEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      .+++.++.|+||++++|++ +.|+.. +++|.|.       .+++..+|..-.+.   +.+.-++..+++.+ .+.|+..
T Consensus        10 ~~i~~~~~i~Ap~e~Vw~a-ltd~~~-~~~W~~~-------~~~~~~~Gg~~~~~~~~g~~~~~v~e~~p~~-~l~~~~~   79 (152)
T 2kew_A           10 PDITKSITLEAPIQKVWET-VSTSEG-IAKWFMP-------NDFQLKEGQEFHLQSPFGPSPCKVLAVQAPT-ELSFEWD   79 (152)
T ss_dssp             CCEEEEEEECSCHHHHHHH-SSSSHH-HHHHHCS-------CCCCSCSSCCBCSSSSCCSCCBEEEEEETTT-EEEEECT
T ss_pred             cEEEEEEEECCCHHHHHHH-HhCHHH-HHHhcCC-------CCCCCCCCCEEEEEecCCceEEEEEEEeCCc-EEEEEEc
Confidence            4689999999999999999 589877 5999886       23444455433332   33556677777754 4556543


Q ss_pred             ecCccCcceEEEEEEEEEEec
Q 044934           81 EEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        81 eG~~l~~~~~s~~~~i~v~p~  101 (115)
                      .+        ....++.|+|.
T Consensus        80 ~~--------~~~~~~~l~~~   92 (152)
T 2kew_A           80 TE--------GWVVTFQLEDL   92 (152)
T ss_dssp             TS--------CCEEEEEEECC
T ss_pred             cC--------CEEEEEEEEEC
Confidence            22        23456777887

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=97.83  E-value=0.00025  Score=48.21  Aligned_cols=90  Identities=6%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccc-ccc-ceeeEEEEecCCccccEEEEc-----e----eeeEEEeeecCCcc
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKL-LPQ-AFKSIVYEQGYGEVGSIEVVS-----T----SMQSRVDALDRDNL   73 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~-~P~-~v~sve~~eGdg~~Gsir~~t-----~----~~kEri~~vDe~~~   73 (115)
                      ++..++.|+||++++|++| .|... +++| .+. .+ .+...++|-.+|.--.+.     +    .+.-++..+++.+ 
T Consensus         2 ~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~-   77 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAW-NDPDC-IARWNAASSDW-HTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGTFTRVEAPT-   77 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCHHH-HTTSSSCSTTE-EEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETTT-
T ss_pred             EEEEEEEeCCCHHHHHHHh-CCHHH-HhccCCCCCCc-ccceEEECCCCCCEEEEEEECCCCCceEEeEEEEEEEeCCC-
Confidence            5788999999999999995 88777 5899 652 23 222344565555433332     2    2456777787644 


Q ss_pred             EEEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           74 YCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        74 ~~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .+.|+. +|        ....++.|+|.       +|||.+
T Consensus        78 ~l~~~~-~~--------~~~~~~~l~~~-------~~gT~l  102 (144)
T 2lgh_A           78 RLSFVM-DD--------GREVDVQFASE-------PGGTWV  102 (144)
T ss_dssp             EEEEEE-TT--------CCEEEEEEEEE-------TTEEEE
T ss_pred             EEEEEe-cC--------CcEEEEEEEEc-------CCCEEE
Confidence            566774 22        14557778887       456754

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=97.79  E-value=0.0003  Score=49.10  Aligned_cols=100  Identities=12%  Similarity=0.006  Sum_probs=59.9

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccc-eeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCcc
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQA-FKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNL   73 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~-v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~   73 (115)
                      -.++..+..++||++++|++| .|... +.+|.+.. --.+...++|..+|..-.+.     +   .+.-++..+++.++
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~a~-Tdpe~-l~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~G~~~~~~g~v~ev~p~~r   85 (166)
T 3put_A            8 HTTFVIERRLTAPVARVFRAW-STPES-KRQWFACHGEWVPLEYALDFRPGGTERNYTADTDGLLHAYDARYIDIVPDTR   85 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHHHH-HCHHH-HHHHHTCC---CCSEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE
T ss_pred             cceEEEEEEECCCHHHHHHHh-CCHHH-HHhcCCCCCCceeeEEEeCcccCCEEEEEEECCCCCEEEEEEEEEEEcCCcE
Confidence            357888999999999999995 88776 58898422 11112234565554333332     2   25677888887554


Q ss_pred             EEEEEEEe-cCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           74 YCKYTVFE-EDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        74 ~~~y~vie-G~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      . .|+..- .+.  .+......++.|+|.       +|||.+
T Consensus        86 l-v~t~~~~~~~--~~~~~s~vt~~l~~~-------~~gT~l  117 (166)
T 3put_A           86 I-IYAYEMKLGQ--TRISASLVTVAFDVE-------PSGTRM  117 (166)
T ss_dssp             E-EEEEEEEETT--EEEEEEEEEEEEEEC-------SSSEEE
T ss_pred             E-EEEEEecCCC--CCCCceEEEEEEEEC-------CCCEEE
Confidence            3 354431 111  122345578888897       456754

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=97.79  E-value=0.00043  Score=48.49  Aligned_cols=100  Identities=6%  Similarity=-0.125  Sum_probs=61.2

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~~~   75 (115)
                      .++..++.|+||++++|++| .|... +++|.+..=-.+...++|..+|..-.+.     +   ...-++..+++.++ +
T Consensus        16 ~~i~~~~~i~Ap~e~Vw~a~-tdpe~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~r-l   92 (175)
T 2lf2_A           16 KTITIKREFAAVRAIVWEAF-TRAEI-LDQWWAPKPWKAKTKSMDFKEGGTWLYAMVGPNGEEHWSICEYAIIKPIER-F   92 (175)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-TCHHH-HHHSSSSSSSEEEEEEECCSTTCEEEEEEECSSSCEEEEEEEECCCCSSSE-E
T ss_pred             ceEEEEEEEcCCHHHHHHHh-CCHHH-HhhCcCCCCccceEEEEeccCCCEEEEEEECCCCCEEEeEEEEEEEcCCCE-E
Confidence            36888999999999999995 88776 5889653211233445676566543332     1   25678888887654 4


Q ss_pred             EEEEEe----cCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFE----EDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vie----G~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|+.--    |.+. ........++.|+|.       +|||.+
T Consensus        93 ~~t~~~~~~~g~p~-~~~~~~~v~~~l~~~-------~~gT~l  127 (175)
T 2lf2_A           93 TGKDGFTDASGKLN-TEMPRSNWDMRFIDK-------GEITEV  127 (175)
T ss_dssp             EEEEEEESSTTCCC-TTSCCEEEEEEEEEE-------TTEEEE
T ss_pred             EEEEEecCCCCCcC-CCCCcEEEEEEEEEC-------CCCEEE
Confidence            455432    2221 111235567888887       456754

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=97.78  E-value=0.00018  Score=48.92  Aligned_cols=85  Identities=14%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccc-cccceeeEEEEecCCccccEEEEc-----e----eeeEEEeeecCCccE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKL-LPQAFKSIVYEQGYGEVGSIEVVS-----T----SMQSRVDALDRDNLY   74 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~-~P~~v~sve~~eGdg~~Gsir~~t-----~----~~kEri~~vDe~~~~   74 (115)
                      ++..++.|+||++++|++| .|... +++| .|..--.+...++|-.+|..-.+.     +    .+.-++..+++.+ .
T Consensus         3 ~i~~~~~i~Ap~e~Vw~al-tdpe~-~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~-~   79 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYW-NEPAH-IMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTND-L   79 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHH-HCHHH-HHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEEEEEETTT-E
T ss_pred             EEEEEEEECCCHHHHHHHH-CCHHH-HhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEEEEEEeCCC-E
Confidence            4678899999999999995 88776 5899 653211233445665555443332     2    2455777787754 4


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEec
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      +.|+. .|        ....++.|+|.
T Consensus        80 l~~~~-~g--------~~~v~~~l~~~   97 (144)
T 2l8o_A           80 IEYTI-GD--------GRKVRIVFTHT   97 (144)
T ss_dssp             EEEEE-TT--------CCEEEEEEEEC
T ss_pred             EEEEe-CC--------CeEEEEEEEEc
Confidence            56774 22        14567888887

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=97.76  E-value=0.00019  Score=48.98  Aligned_cols=94  Identities=11%  Similarity=-0.074  Sum_probs=55.9

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEE--EEecCCccccEEEEc-----e---eeeEEEeeecCCccE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIV--YEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNLY   74 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve--~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~~   74 (115)
                      ++..++.|+||++++|++ +.|... +++|.+..--.+.  ..++|..+|..-.+.     +   .+.-++..+|+.++ 
T Consensus         3 ~i~~~r~i~Ap~e~Vw~a-ltdp~~-~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~~-   79 (152)
T 3eli_A            3 DLRLEREFAVAPEALFAW-VSDGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQS-   79 (152)
T ss_dssp             EEEEEEEESSCHHHHHHH-TTCHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTE-
T ss_pred             eEEEEEEECCCHHHHHHH-HcCHHH-HhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCEEEEEEEEEEEcCCCE-
Confidence            577889999999999999 488776 4888763211111  123454555433222     2   46677888877544 


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEec
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      +.|+....+.-...-.....++.|+|.
T Consensus        80 l~~~~~~~~~~~~~~~~~~v~~~l~~~  106 (152)
T 3eli_A           80 VGFTWGWHDDDDRRGAESHVMFIVEPC  106 (152)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEECCBC
T ss_pred             EEEEEeecCCCCCCCCcEEEEEEEEEC
Confidence            446554322111122345677888887

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=97.73  E-value=0.00021  Score=48.99  Aligned_cols=88  Identities=16%  Similarity=0.170  Sum_probs=56.1

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKY   77 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y   77 (115)
                      ...++..++.|+||++++|++| .|... +++|.|.       .+++..+|..-.+.    ..+.-++..+++.+ .+.|
T Consensus         7 ~~~~i~~~~~i~Ap~e~Vw~al-tdp~~-~~~W~~~-------~~~~~~~Gg~~~~~~~~g~~~~g~v~e~~p~~-~l~~   76 (151)
T 3q63_A            7 ENRTVVVERQISHPPEKLWRAL-TQPHL-IEEWLMK-------NDFKPAVGHRFNISADWGGVLDCEVLAVEPNK-TLSY   76 (151)
T ss_dssp             --CEEEEEEEESSCHHHHHHHH-HCHHH-HHHHSCE-------ECCCSSTTCEEEEECTTSCEEEEEEEEEETTT-EEEE
T ss_pred             CCCeEEEEEEeCCCHHHHHHHH-cCHHH-HHhhcCc-------CCCccCCCCEEEEECCCCCEEEEEEEEEeCCC-EEEE
Confidence            3467889999999999999995 88776 5899983       23454566554443    34666777787755 4456


Q ss_pred             EEEecC--ccCcceEEEEEEEEEEec
Q 044934           78 TVFEED--CISDILELIVFQIKFGPY  101 (115)
Q Consensus        78 ~vieG~--~l~~~~~s~~~~i~v~p~  101 (115)
                      +...++  .....  .-..++.|+|.
T Consensus        77 ~~~~~~~~~~~~~--~s~v~~~l~~~  100 (151)
T 3q63_A           77 TWNLAHQDPAFDL--RSVVTFTLTPT  100 (151)
T ss_dssp             ECBBCCSSTTTCB--CCEEEEEEEEC
T ss_pred             EEecCCCCCCCCC--CeEEEEEEEEc
Confidence            654322  21112  23456778887

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=97.69  E-value=0.00029  Score=48.68  Aligned_cols=93  Identities=10%  Similarity=0.064  Sum_probs=58.5

Q ss_pred             EEEEEEEEeccCHHHHHHHHhccccccccccccc-ceeeEEEEecCCccccEEEEc-----ee--eeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQ-AFKSIVYEQGYGEVGSIEVVS-----TS--MQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~-~v~sve~~eGdg~~Gsir~~t-----~~--~kEri~~vDe~~~~~   75 (115)
                      .++..++.|+||++++|++| .|... +++|.+. .+ .+...++|-.+|..-.+.     +.  +.-++..+++.++ +
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~-tdpe~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~g~v~e~~p~~r-l   83 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAY-TKREL-FEQWFHPQDA-SVTVYDFNATKGGSAFYAIQAPQMISYTIAEYLQVDAPYY-I   83 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHH-HCHHH-HTTTCCCTTC-EEEEEECCCSTTEEEEEEEEETTEEEEEEEEESCCBTTTE-E
T ss_pred             ceEEEEEEeCCCHHHHHHHh-CCHHH-HHhccCCCCc-eeeEEEEeccCCCEEEEEEECCCCCEEEEEEEEEEcCCCE-E
Confidence            46888999999999999995 88776 4888653 22 233455776666543332     22  6778888887654 4


Q ss_pred             EEEEEecC----ccCcceEEEEEEEEEEec
Q 044934           76 KYTVFEED----CISDILELIVFQIKFGPY  101 (115)
Q Consensus        76 ~y~vieG~----~l~~~~~s~~~~i~v~p~  101 (115)
                      .|+.-.++    +. ........++.|+|.
T Consensus        84 ~~t~~~~~~~g~p~-~~~~~~~v~~~l~~~  112 (164)
T 2l9p_A           84 EYLDYFATSKGEKD-TSMPGMHITLNFEEV  112 (164)
T ss_dssp             EEEEEEEBTTBSCC-SSSCCEEEEEEECCC
T ss_pred             EEEEEecCCCCCcc-CCCCceEEEEEEEEC
Confidence            46554321    11 011124567888887

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=97.67  E-value=0.00063  Score=47.65  Aligned_cols=100  Identities=11%  Similarity=0.075  Sum_probs=60.4

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCcccc-EEEE-c---e---eeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGS-IEVV-S---T---SMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gs-ir~~-t---~---~~kEri~~vDe~~~~~   75 (115)
                      .++..+..++||++++|++| .|... +.+|.+..--.+...+.|..+|. .+.. .   +   .+.-++..+++.++ +
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~-Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~G~~~~~~g~~~ev~p~~r-l   89 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIY-ADPRQ-LEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEKYAGYWEITAVDEPHS-F   89 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-HSHHH-HHHHHCCTTSCCEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE-E
T ss_pred             CEEEEEEEEcCCHHHHHHHh-CCHHH-HhhEeCCCCeeeeEEEEcccCCcEEEEEEECCCCCEEeeEEEEEEEeCCcE-E
Confidence            35788999999999999995 88666 47885432112334556765654 3332 1   2   26677888887554 3


Q ss_pred             EEEEE----ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVF----EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vi----eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|+-.    +|.+. ........++.|+|.       +|||.+
T Consensus        90 v~t~~~~~~~g~p~-~~~~~s~vt~~l~~~-------~~gT~l  124 (168)
T 3uid_A           90 SFLDGFADEDFNPN-TDLPVSTNVYTFTEH-------DGGTRA  124 (168)
T ss_dssp             EEEEEEECTTSCBC-SSCCCEEEEEEEEEE-------TTEEEE
T ss_pred             EEEEeeccCCCCcC-CCCCcEEEEEEEEEC-------CCCEEE
Confidence            45542    23221 111234577888887       467754

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=97.62  E-value=0.00032  Score=48.53  Aligned_cols=97  Identities=13%  Similarity=0.044  Sum_probs=59.0

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccc--eeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCcc
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQA--FKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNL   73 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~--v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~   73 (115)
                      .++..+..|+||++++|++| .|... +++|.+..  +. +...++|..+|..-.+.     +   .+.-++..+++.++
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~al-tdp~~-~~~W~~~~~g~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~r   85 (162)
T 3q64_A            9 STFIIERLYPAPPSKVFFAL-GNADA-KRRWFTDPDNPM-PGRFEMDFRVGGKEVNAGGPKDGPIHVYTATYQDIVPDQR   85 (162)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCHHH-HHHHSSCTTSCC-GGGCEECCSTTCEEEEEECCTTSCCEEEEEEEEEEETTTE
T ss_pred             ceEEEEEEeCCCHHHHHHHH-CCHHH-HhhcCCCCCCcc-ceEEEECCccCCEEEEEEECCCCCEEEEEEEEEEEcCCCE
Confidence            46888899999999999995 88776 58998542  11 11123454455443332     1   36677788877554


Q ss_pred             EEEEEEEe--cCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           74 YCKYTVFE--EDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        74 ~~~y~vie--G~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                       +.|+..-  .+.   +......++.|+|.      + +||.+
T Consensus        86 -l~~~~~~~~~~~---~~~~s~v~~~l~~~------~-~gT~l  117 (162)
T 3q64_A           86 -IVYSYDMLFGET---RISVSLATIQLFAE------G-EGTRL  117 (162)
T ss_dssp             -EEEEEEEEETTE---EEEEEEEEEEEEEE------T-TEEEE
T ss_pred             -EEEEEEecCCCC---CCCceEEEEEEEEc------C-CCEEE
Confidence             3455431  221   22344578888887      4 46764

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=97.61  E-value=0.00045  Score=48.22  Aligned_cols=72  Identities=8%  Similarity=0.009  Sum_probs=48.6

Q ss_pred             EEEEEEEEeccCHHHHHHHHhccccccccccccc-ceeeEEEEecCCccccEEEEc-----e---eeeEEEeeecCCccE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQ-AFKSIVYEQGYGEVGSIEVVS-----T---SMQSRVDALDRDNLY   74 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~-~v~sve~~eGdg~~Gsir~~t-----~---~~kEri~~vDe~~~~   74 (115)
                      .++..++.|+||++++|+++ .|... +++|.+. .+. +...++|..+|..-.+.     +   .+.-++..+++.++ 
T Consensus        10 ~~i~~~r~i~Ap~e~Vw~al-tdp~~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~r-   85 (178)
T 1xfs_A           10 LDLMLKRELAVPVNLVWRGL-TEPEL-LKKWFVPKPWS-ISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEKR-   85 (178)
T ss_dssp             TEEEEEEEESSCHHHHHHHH-HCHHH-HTTTSSCTTCE-EEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTTE-
T ss_pred             ceEEEEEEecCCHHHHHHHh-CCHHH-HhhCCCCCCee-eeEEEEeeECCcEEEEEEECCCCCEEEEEEEEEEEeCCCE-
Confidence            36788999999999999995 88777 5899653 222 23445666666554443     2   45667888887544 


Q ss_pred             EEEEE
Q 044934           75 CKYTV   79 (115)
Q Consensus        75 ~~y~v   79 (115)
                      +.|+.
T Consensus        86 l~~~~   90 (178)
T 1xfs_A           86 LIWTS   90 (178)
T ss_dssp             EEEES
T ss_pred             EEEEE
Confidence            45655

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=97.58  E-value=0.00059  Score=48.74  Aligned_cols=85  Identities=9%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCCccEEEEEEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      .++..++.|+||++++|++| .|+.. +++|.|. ....     |..+|..-.+.   ....-++..+++.+ .+.|+.-
T Consensus        36 ~~i~~~~~i~Ap~e~VW~al-tdp~~-l~~W~~~-~~~~-----d~~~Gg~~~~~~~~~~~~~~v~e~~p~~-rl~~~~~  106 (184)
T 2nn5_A           36 IYFGTERAISASPQTIWRYL-TETDK-LKQWFPE-LEIG-----ELGVNGFWRFILPDFEETMPFTDYAEEK-YLGVTWD  106 (184)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCHHH-HHHHCTT-EEEE-----ECSTTCEEEEEETTEEEEEEEEEEETTT-EEEEEET
T ss_pred             cEEEEEEEeCCCHHHHHHHH-cCHHH-HHHhCCC-cccc-----ccCCCCEEEEEEeCCCceEEEEEecCCC-EEEEEEc
Confidence            36888999999999999995 89877 5999985 2222     32333332232   13445677777655 4445541


Q ss_pred             ecCccCcceEEEEEEEEEEe-cccccccCCCceee
Q 044934           81 EEDCISDILELIVFQIKFGP-YKLKKISSNASCLM  114 (115)
Q Consensus        81 eG~~l~~~~~s~~~~i~v~p-~~~~~~~~~gg~~v  114 (115)
                       +         ...++.|+| .       +|||.+
T Consensus       107 -~---------~~v~~~l~~~~-------~~gT~l  124 (184)
T 2nn5_A          107 -T---------GIIYFDLKEQA-------PHQTLL  124 (184)
T ss_dssp             -T---------EEEEEEEEEEE-------TTEEEE
T ss_pred             -C---------eEEEEEEEECC-------CCCEEE
Confidence             1         456777888 5       456754

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=97.35  E-value=0.0013  Score=47.11  Aligned_cols=89  Identities=8%  Similarity=0.008  Sum_probs=60.0

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEceeeeEEEeeecCCccEEEEEEEecC
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEED   83 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t~~~kEri~~vDe~~~~~~y~vieG~   83 (115)
                      .++..+..|++|++++|++| .|... +++|.+..       ++|..+|..-.+.....-++..+++. +.+.|+...++
T Consensus        21 ~~i~~~r~i~Appe~Vw~al-Tdpe~-l~~W~~p~-------~~d~~~Gg~~~~~~~~~g~v~e~~pp-~rl~~tw~~~~   90 (181)
T 4fpw_A           21 RSIIIRQRYDAPVDEVWSAC-TDPNR-INRWFIEP-------KGDLREGGNFALQGNASGDILRCEPP-RRLTISWVYEG   90 (181)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCHHH-HHHHSCCE-------ESCCSTTCEEEESSSCEEECCEEETT-TEEEEEEBCTT
T ss_pred             ceEEEEEEECCCHHHHHHHH-cChHH-HhhccCCC-------ccCCCCCCEEEEEecCCEEEEEEcCC-cEEEEEEEcCC
Confidence            46788999999999999995 88776 58998742       46666776655552223456667664 45557765443


Q ss_pred             ccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           84 CISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        84 ~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .   +  ....++.|+|.       ++||.+
T Consensus        91 ~---~--~s~vt~~l~~~-------~~gT~L  109 (181)
T 4fpw_A           91 K---P--DSEVELRLSEE-------GDGTLL  109 (181)
T ss_dssp             S---C--CEEEEEEEEEE-------TTEEEE
T ss_pred             C---C--cEEEEEEEEEC-------CCcEEE
Confidence            1   1  34577888887       467765

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=97.30  E-value=0.00077  Score=45.51  Aligned_cols=90  Identities=6%  Similarity=0.046  Sum_probs=51.7

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-eeeeEEEeeecCCccEEEEEE
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-~~~kEri~~vDe~~~~~~y~v   79 (115)
                      |.-.+++.++.|+||++++|++| .|... +++|.+.. ..     .|..+|..-.+. +.+.=++..+++.+ .+.|+-
T Consensus         8 m~~~~i~~~~~i~ap~e~Vw~al-tdp~~-~~~W~~~~-~~-----~d~~~Gg~~~~~~G~~~g~v~e~~p~~-~l~~~~   78 (145)
T 1x53_A            8 IPTCKITLKETFLTSPEELYRVF-TTQEL-VQAFTHAP-AT-----LEADRGGKFHMVDGNVSGEFTDLVPEK-HIVMKW   78 (145)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHT-TCHHH-HHHHSCSC-CB-----CCCSTTCCCBBTTTTEECCEEEEETTT-EEEEEE
T ss_pred             ccccEEEEEEEECCCHHHHHHHh-CCHHH-HHHhcCCC-ce-----EECCCCCEEEEECCeeEEEEEEEeCCC-EEEEEE
Confidence            44568899999999999999994 88776 58998642 22     333333221121 22344556666544 445555


Q ss_pred             EecCccCcceEEEEEEEEEEec
Q 044934           80 FEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      -..+.....+  ...++.|+|.
T Consensus        79 ~~~~~~~~~~--~~v~~~l~~~   98 (145)
T 1x53_A           79 RFKSWPEGHF--ATITLTFIDK   98 (145)
T ss_dssp             EETTSCTTCC--EEEEEECCBC
T ss_pred             ecCCCCCCCc--EEEEEEEEEC
Confidence            4333211222  3456667776

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=97.29  E-value=0.001  Score=47.53  Aligned_cols=87  Identities=6%  Similarity=-0.028  Sum_probs=56.3

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---e------------------
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---T------------------   59 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~------------------   59 (115)
                      |...++..++.|++|++++|+++ .|... +++|.|..       ++|-.+|..-.+.   .                  
T Consensus        16 ~~~~~i~~~~~i~Ap~e~Vw~al-tdpe~-~~~W~~~~-------~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~   86 (191)
T 2k5g_A           16 LDAQSIRFERLLPGPIERVWAWL-ADADK-RARWLAGG-------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPI   86 (191)
T ss_dssp             SCCSSEEEEEEESSSSHHHHHHH-HCHHH-HTTTSCCC-------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCE
T ss_pred             cCCCeEEEEEEeCCCHHHHHHHH-cCHHH-HhhcCCCC-------CCCccCCCEEEEEEcCCccccccCcccccccCCCc
Confidence            34456889999999999999994 88777 59999862       3454555544433   1                  


Q ss_pred             eeeEEEeeecCCccEEEEEEEecCccCcceEEEEEEEEEEec
Q 044934           60 SMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        60 ~~kEri~~vDe~~~~~~y~vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      .+.-++..+|+.+ .+.|+.-.++.  ..  ....++.++|.
T Consensus        87 ~~~g~v~e~~pp~-rl~~~~~~~~~--~~--~~~v~~~l~~~  123 (191)
T 2k5g_A           87 VARHTLLRCEPPR-VLALTWGGGAG--EA--PSEVLFELSEA  123 (191)
T ss_dssp             EEEEEEEEEETTT-EEEEECCCCSS--SS--CCEEEEEEEEC
T ss_pred             eeEEEEEEecCCC-EEEEEeecCCC--CC--CEEEEEEEEEc
Confidence            2566777787655 45566543321  11  23456777887

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=97.22  E-value=0.0013  Score=45.78  Aligned_cols=95  Identities=13%  Similarity=0.102  Sum_probs=55.7

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-eeeeEEEeeecCCccEEEEEEEec
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-TSMQSRVDALDRDNLYCKYTVFEE   82 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-~~~kEri~~vDe~~~~~~y~vieG   82 (115)
                      .++..+..++||++++|+|| .|... +.+|.+.....     .|-.+|..-.+. +.+.=++..+++.++. .|+---.
T Consensus        19 ~~i~~~r~~~ap~e~Vw~A~-Tdpe~-l~~W~~g~~~~-----~d~~~GG~~~~~~G~~~g~v~ev~p~~rl-v~tw~~~   90 (158)
T 3ni8_A           19 MSFEITEEYYVPPEVLFNAF-TDAYT-LTRLSRGSLAE-----VDLKVGGKFSLFSGSILGEFTEITKPHKI-VEKWKFR   90 (158)
T ss_dssp             CCEEEEEEESSCHHHHHHHH-HCHHH-HHHHTTTSCCE-----ECCSTTCEEEETTTTEEEEEEEEETTTEE-EEEEEET
T ss_pred             ceEEEEEEECCCHHHHHHHh-cCHHH-HHhhcCCCccE-----EEccCCCEEEEecCCEEEEEEEEeCCcEE-EEEEEec
Confidence            46788899999999999995 88666 58899731222     343444333333 4445566667765443 3433222


Q ss_pred             CccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           83 DCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        83 ~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.....+  -..++.|+|.      .+|||.+
T Consensus        91 ~~~~~~~--s~vt~~l~~~------~~~~T~l  114 (158)
T 3ni8_A           91 DWNECDY--STVTVEFISV------KENHTKL  114 (158)
T ss_dssp             TSCSSCC--EEEEEEEEEE------ETTEEEE
T ss_pred             CCCCCCc--EEEEEEEEec------CCCCEEE
Confidence            2211222  3467778884      3566754

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=97.02  E-value=0.011  Score=42.75  Aligned_cols=88  Identities=8%  Similarity=0.023  Sum_probs=56.9

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEceeeeEEEeeecCCccEEEEEEEecCc
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEEDC   84 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t~~~kEri~~vDe~~~~~~y~vieG~~   84 (115)
                      ++..+-.+++|+++||+++ .|... +.+|++.       .++|-.+|..-.+.....-++..+|+.. .+.|+--..+.
T Consensus        33 ~l~i~R~f~Ap~e~VW~Al-Tdpe~-l~~W~~~-------~~~d~r~GG~~~~~~~~~g~v~ev~pp~-rL~~tw~~~~~  102 (192)
T 2luz_A           33 SIIIRQRYDAPVDEVWSAC-TDPNR-INRWFIE-------PKGDLREGGNFALQGNASGDILRCEPPR-RLTISWVYEGK  102 (192)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCHHH-HTTTSCC-------EEECCSTTSEEEETTSEEEEEEEEETTT-EEEEEEEESSS
T ss_pred             EEEEEEEeCCCHHHHHHHH-cCHHH-HheeeCC-------CcccCccCcEEEeeccccceEEEEecCe-eEEEEEeecCC
Confidence            5777888999999999995 88776 5899874       2466666665555522334566677654 45566433221


Q ss_pred             cCcceEEEEEEEEEEecccccccCCCceee
Q 044934           85 ISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        85 l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                         ..  -..++.++|.       ++||.+
T Consensus       103 ---~~--~~vt~~L~~~-------g~gT~L  120 (192)
T 2luz_A          103 ---PD--SEVELRLSEE-------GDGTLL  120 (192)
T ss_dssp             ---CE--EEEEEEEEEE-------TTEEEE
T ss_pred             ---CC--ceEEEEEEEc-------CCcEEE
Confidence               11  2457888887       456754

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=96.97  E-value=0.0049  Score=43.18  Aligned_cols=35  Identities=11%  Similarity=0.059  Sum_probs=30.4

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSI   42 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sv   42 (115)
                      ..+.+++|++|++++|+. ..|+.+| |.|+|+ ++++
T Consensus        28 ~~~~si~I~ap~eeVy~~-~~D~e~l-P~W~~~-l~~~   62 (156)
T 2qpv_A           28 SRIIHLSVEKPWAEVYDF-AANPGNM-PRWAAG-LAGG   62 (156)
T ss_dssp             EEEEEEEESSCHHHHHHH-HHCGGGG-GGTCGG-GTTC
T ss_pred             ceEEEEEEcCCHHHHHHH-HHChhhH-HHHHHh-hhhh
Confidence            468899999999999999 6999995 999997 6554

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.81  E-value=0.0028  Score=51.24  Aligned_cols=96  Identities=9%  Similarity=0.037  Sum_probs=71.6

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC--ccccEEEEc----eeeeEEE--eeecCCccEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG--EVGSIEVVS----TSMQSRV--DALDRDNLYCK   76 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg--~~Gsir~~t----~~~kEri--~~vDe~~~~~~   76 (115)
                      +++.+..|++|++++|+-| .|..++ ++|.|. ...++++.++|  .+|++- |.    ....-++  ..+|+.. .+.
T Consensus         2 ~~~~~~~i~~p~~~v~~~~-~~~~~~-~~~~p~-~~~~~~~~~~~~~~~G~~~-~~~~~~~~w~~~~~~t~~~~~~-~F~   76 (516)
T 3oh8_A            2 SLTTSHFIPFPREMVWDWH-TRKGAV-ARLTPP-FIPLNPITQAERLADGTTI-FSLPAGLKWVARHDLSGFLNGS-RFT   76 (516)
T ss_dssp             CEEEEEEESSCHHHHHHHH-HSTTHH-HHHSCT-TSSCEECSCCSCSSSCEEE-EECSTTCEEEEEECGGGCBTTT-EEE
T ss_pred             eEEEEEEccCCHHHHHHHh-cCcchH-HHhCCC-CCceEEecCCCCCcCCeEE-EecCCCcEEEEEEccccccCCC-eEE
Confidence            4778999999999999984 888884 899995 78888885544  678877 76    4556666  7677665 556


Q ss_pred             EEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           77 YTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        77 y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ..+..|.+.  .|.++..+-.|++.       +|||.+
T Consensus        77 d~~~~gp~~--~~~~w~h~h~f~~~-------~~gt~~  105 (516)
T 3oh8_A           77 DVCLTAPVK--ALANWRHVHNFVDQ-------DGGTLI  105 (516)
T ss_dssp             EECCSCSSG--GGSSCEEEEEEEEE-------TTEEEE
T ss_pred             EEeccCccc--ceeeeEEEEEEEEc-------CCCcEE
Confidence            777766532  38888888899997       446765

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=95.61  E-value=0.031  Score=38.22  Aligned_cols=29  Identities=28%  Similarity=0.492  Sum_probs=23.1

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccc
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLP   36 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P   36 (115)
                      ..+..+..+++|++++|++| .|  . +.+|.+
T Consensus         4 ~~i~~~r~~~Ap~e~Vw~A~-Td--~-l~~W~~   32 (155)
T 1zxf_A            4 PFVRHSVTVKADRKTAFKTF-LE--G-FPEWWP   32 (155)
T ss_dssp             SCEEEEEEESSHHHHHHHHH-TT--C-SSSSSS
T ss_pred             ceEEEEEEEeCCHHHHHHHH-Hh--h-HHhhcC
Confidence            35778899999999999996 56  2 477774

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.23  E-value=0.058  Score=37.05  Aligned_cols=71  Identities=8%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             CccEEEEEEEEeccCH-HHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--eeeeEEEeeecCCccEEEE
Q 044934            1 MGVLRFDKDGSVAAAP-SRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--TSMQSRVDALDRDNLYCKY   77 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a-~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--~~~kEri~~vDe~~~~~~y   77 (115)
                      |.-.+++.|+.++||+ +++|++ +.++..| ..|..+.+.    ..|+   +.+-.|.  +...-+|..+|+.+ .++|
T Consensus         1 m~k~~i~~e~~i~A~~~~~VW~~-IStPegL-~~Wfad~v~----~~g~---~~~F~w~~~~~~~~~v~~~~~~~-~i~F   70 (136)
T 2lio_A            1 MKKEKIHLEYLLNATSKNILWSA-ISTPTGL-EDWFADKVV----SDDK---TVTFCWGKTEQRQAGIVAIRAYS-FIRF   70 (136)
T ss_dssp             CCCEEEEEEEEECTTSCTHHHHG-GGSHHHH-TTTSSSEEE----EETT---EEEEESSSSSEEEEEEEEEETTT-EEEE
T ss_pred             CCCCcEEEEEEecCChHHHHHHH-hCChhhh-hcccCCCCc----ccCc---eEEEEeCCCCcEeEEEEEEcCCC-EEEE
Confidence            5557899999999999 999999 7888774 789987644    2342   2222444  34456666666654 4556


Q ss_pred             EEEe
Q 044934           78 TVFE   81 (115)
Q Consensus        78 ~vie   81 (115)
                      +=..
T Consensus        71 rW~~   74 (136)
T 2lio_A           71 HWLD   74 (136)
T ss_dssp             EESS
T ss_pred             EccC
Confidence            6643

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=94.47  E-value=0.77  Score=31.72  Aligned_cols=43  Identities=16%  Similarity=0.261  Sum_probs=35.3

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG   49 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg   49 (115)
                      ..+-.+..+++||+++|++ +.|... .|+|.|. +.++++++-++
T Consensus        27 ~~~k~~~~v~~s~~~v~~~-l~D~~~-~~~W~~~-~~~~~vle~~~   69 (189)
T 3qsz_A           27 REFRGEVRLKAAADDVVKV-LRDANA-FRQWMPD-VAASELLKATD   69 (189)
T ss_dssp             CEEEEEEEESSCHHHHHHH-HHCGGG-GGGTSTT-EEEEEEEEECS
T ss_pred             EEEEEEEEEECCHHHHHHH-HHhHHH-hhhHHHh-cCEEEEEeecC
Confidence            4566778889999999999 589887 6999995 88888887643

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=94.30  E-value=0.91  Score=31.84  Aligned_cols=50  Identities=12%  Similarity=0.147  Sum_probs=38.4

Q ss_pred             EEEEEEEEec-cCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc
Q 044934            4 LRFDKDGSVA-AAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS   58 (115)
Q Consensus         4 ~~~~~ei~i~-a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t   58 (115)
                      ..+-.+..++ +|++++|++ +.|... .|+|.|. +.++++++-+|  ..|..+.
T Consensus        52 ~~~k~~~~i~~~~~~~v~~~-l~d~~~-r~~Wd~~-~~~~~vle~~~--~~i~~~~  102 (214)
T 1ln1_A           52 YEYKVFGVLEDCSPTLLADI-YMDSDY-RKQWDQY-VKELYEQECNG--ETVVYWE  102 (214)
T ss_dssp             EEEEEEEEETTSCHHHHHHH-HHCHHH-HHHHCTT-EEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEEECCCCHHHHHHH-HcCHHH-HHHHHHH-HhhEEEeccCC--CEEEEEE
Confidence            4567788895 999999999 588765 6999995 88888888766  3455544

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=94.29  E-value=0.68  Score=32.62  Aligned_cols=61  Identities=8%  Similarity=0.039  Sum_probs=42.2

Q ss_pred             EEEEEEEeccC---------HHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeee
Q 044934            5 RFDKDGSVAAA---------PSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDAL   68 (115)
Q Consensus         5 ~~~~ei~i~a~---------a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~v   68 (115)
                      ++++.++||.|         .+++|+-+.....+ -...+| .+.+|++++.++ ..-.|.++   ..+.|++...
T Consensus         2 ~f~htvpIN~p~~p~~p~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vlse~~-~~~~R~l~fg~~~i~e~vtl~   74 (157)
T 2ffs_A            2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVV-GLERFEILVDDG-DRLHRRLYLPGLVVEDEVVLK   74 (157)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCT-TCCEEEEEEECS-SEEEEEEEETTEEEEEEEEEE
T ss_pred             ceeEEEecCCCCCCCCCccCHHHHHHHHHHHhcC-hhhccc-ccCeEEEEecCC-CeEEEEEEECCCccceEEEEc
Confidence            46778888775         36899987655444 123455 699999997753 25568887   6788888743

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=85.97  E-value=1.5  Score=32.76  Aligned_cols=41  Identities=20%  Similarity=0.269  Sum_probs=33.1

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG   47 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG   47 (115)
                      ..+-.+..+++||+.+|+.+ .|... .|+|-|. ++++++++-
T Consensus        88 l~~k~~~~v~~~~~~v~~~L-~D~~~-R~~WD~~-~~~~~vle~  128 (258)
T 3fo5_A           88 LSFHMEMVVHVDAAQAFLLL-SDLRQ-RPEWDKH-YRSVELVQQ  128 (258)
T ss_dssp             EEEEEEEEESSCHHHHHHHH-HCGGG-GGGTCTT-CCEEEEEEE
T ss_pred             eEEEEEEEEeCCHHHHHHHH-hCchh-HhHhhhh-ccEEEEEEE
Confidence            34566778999999999994 68877 6999995 888888754

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=82.60  E-value=2.3  Score=30.20  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG   47 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG   47 (115)
                      +-.+..+++|++++|+.+..|... .++|-|. +.+++++|-
T Consensus        57 ~k~~~~v~~~~~~v~~~l~~d~~~-r~~Wd~~-~~~~~vle~   96 (221)
T 3p0l_A           57 FRLEVVVDQPMERLYEELVERMEA-MGEWNPN-VKEIKVLQK   96 (221)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTGGG-TTTSCTT-CSEEEEEEE
T ss_pred             EEEEEEEcCCHHHHHHHHHhccch-hhhcCcc-hheEEEEEe
Confidence            445667799999999995457666 6999995 888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	7e-23
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	2e-22
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	3e-21
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	5e-21
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	1e-19
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	3e-17

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 84.9 bits (210), Expect = 7e-23
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +     +RMFKAF++D   L PK+ PQA  S+   +G G  G+I+ ++   
Sbjct: 1   GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
                 ++ RVD +D  N    Y+V E   + D LE I  +IK         + +  C++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVA------TPDGGCVL 114

Query: 115 K 115
           K
Sbjct: 115 K 115

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 83.8 bits (207), Expect = 2e-22
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV     + + + +  ++F+ FVID   + PK  P A+KS+  + G G  G++++++   
Sbjct: 1   GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEIK-GDGGPGTLKIITLPD 59

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
               T+M  R+D ++++ L   Y+V + D +   +E I   +   P      +++   + 
Sbjct: 60  GGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVP------TADGGSIC 113

Query: 115 K 115
           K
Sbjct: 114 K 114

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 80.7 bits (199), Expect = 3e-21
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 13/121 (10%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  ++ + +    P R+FKAFV+D+ NL PK+ PQA K     +G G  G+I+ ++   
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
                 ++ ++D++D++N    YT+ E D + D LE I ++ K         S +   ++
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVA------SPSGGSII 114

Query: 115 K 115
           K
Sbjct: 115 K 115

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 80.3 bits (198), Expect = 5e-21
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 14/121 (11%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  F+ + +   AP+R++KA V D+  + PK   +A +SI   +G G  G+I+ ++   
Sbjct: 1   GVFTFEDESTSTIAPARLYKALVKDADAIIPK-AVEAIQSIETVEGNGGPGTIKKLTLIE 59

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
                 +  +++A+D  NL   Y++     + D +E I F+ K          +N   + 
Sbjct: 60  GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVE------GANGGSIG 113

Query: 115 K 115
           K
Sbjct: 114 K 114

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 76.5 bits (188), Expect = 1e-19
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 14/121 (11%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           G+  F+ + S   AP++++KA   DS  + PK++    +S+   +G G  G+I+ +    
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIH 59

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM 114
               + +  ++DA+D  NL   Y++   + + + LE I ++ K  P        +   + 
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILP------GPDGGSIG 113

Query: 115 K 115
           K
Sbjct: 114 K 114

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 70.0 bits (171), Expect = 3e-17
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 2   GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--- 58
           GV  F  + S + AP++++KA   DS  +  + +    +SI   +G G VG+I+ ++   
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTI-AQKIDGPIQSIELVEGNGGVGTIKKITANE 59

Query: 59  ----TSMQSRVDALDRDNLYCKYTVFEEDCISDILELIVFQIKFGP 100
               + +  +VDA+D  NL   Y++     + + LE + F+ K   
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVA 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.85
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.78
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.14
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.09
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.06
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	98.94
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	98.46
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	98.37
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	98.37
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	97.92
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	97.75
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	97.75
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	97.65
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	97.64
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	97.42
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	97.38
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	97.29
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	97.21
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	96.72
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	96.12
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	93.96
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	86.19

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=1.4e-37  Score=221.39  Aligned_cols=107  Identities=26%  Similarity=0.530  Sum_probs=102.8

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      |+.+++.|+++++||+|+|++|+.|+++|+||++|+.|+++++ ||||++||||.||       .++|||++++|++|++
T Consensus         1 gv~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~svev-eGdG~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   79 (153)
T d2bk0a1           1 GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALT   79 (153)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEE-ESSSSTTCEEEEECCTTSSCCEEEEEEEEEETTTTE
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEEE-ECCCCCCeEEEEEEecCccceeeEEEEEEEecCccE
Confidence            7899999999999999999999899999999999999999995 8999999999999       7899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|+++|||++.++|++|+.+++++|+      ++|||+||
T Consensus        80 ~~y~viEGd~l~~~y~s~~~~~~~~~~------~~ggsv~k  114 (153)
T d2bk0a1          80 FDYSVIDGDILLGFIESIENHVVLVPT------ADGGSICK  114 (153)
T ss_dssp             EEEEEEESGGGTTTEEEEEEEEEEEEC------TTSCEEEE
T ss_pred             EEEEEEecccccccEEEEEEEEEEecC------CCCCeEEE
Confidence            999999999888999999999999999      89999986

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=2.3e-37  Score=221.21  Aligned_cols=108  Identities=33%  Similarity=0.620  Sum_probs=104.5

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      |+.+++.|+++++||+|+|++|++|+++++|+|+|+.+++++++||||++||||.||       .++||||+.+|++||+
T Consensus         1 Gv~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   80 (159)
T d1fm4a_           1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEEEEETTTTE
T ss_pred             CceEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCceEEEEEEEEEcccccE
Confidence            789999999999999999999999999999999999999999999999999999999       6899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|++||||.+.++|++|+++++|+|+      ++|||++|
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~~k~~~~------~~gg~v~k  115 (159)
T d1fm4a_          81 YNYSVIEGGPVGDTLEKISNEIKIVAT------PDGGCVLK  115 (159)
T ss_dssp             EEEEEEEBTTBTTTEEEEEEEEEEEEC------TTSCEEEE
T ss_pred             EEEEEEeccccccceEEEEEEEEEecC------CCCceEEE
Confidence            999999999888999999999999999      89999985

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=4.4e-37  Score=219.66  Aligned_cols=107  Identities=29%  Similarity=0.514  Sum_probs=102.5

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      ||.+++.|+++++||+|+|++|+.|+|+|+|++ |+.|+|++++||||++||||.|+       .++|||++++|++|++
T Consensus         1 gv~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~   79 (157)
T d1xdfa1           1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAVDEANLR   79 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhchhhccccc-hhheecceeecCCCCCCcEEEEEEcCCCccEEEEEEEEEEechhcE
Confidence            789999999999999999999999999998997 67899999999999999999999       6899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|++||||+|.+.|++|+++++++|+      ++|||+||
T Consensus        80 ~~y~viEGd~l~~~~~s~~~~~k~~~~------~~ggsv~k  114 (157)
T d1xdfa1          80 YNYSIVGGVGLPDTIEKISFETKLVEG------ANGGSIGK  114 (157)
T ss_dssp             EEEEEESSTTSCTTEEEEEEEEEEEEC------TTSSEEEE
T ss_pred             EEEEEEecccccccEEEEEEEEEEEcC------CCCceEEE
Confidence            999999999988999999999999999      89999986

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=5e-37  Score=219.49  Aligned_cols=108  Identities=32%  Similarity=0.619  Sum_probs=104.2

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      |+.+++.|+++++||+|+|++|++|+++|+|+++|+.|++++++||||++||||.||       .++||||+++|++||+
T Consensus         1 gv~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~   80 (159)
T d1e09a_           1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             CceEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCcEEEEEEEEEEcccccE
Confidence            789999999999999999999889999999999999999999999999999999999       6899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|++||||++.++|++|+.++++.|+      ++|||++|
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~~~~~~~------~~~g~vvk  115 (159)
T d1e09a_          81 YSYTLIEGDALGDTLEKISYETKLVAS------PSGGSIIK  115 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEEEEEECCC------TTSSEEEE
T ss_pred             EEEEEEecccccccEEEEEEEEEEccC------CCCCcEEE
Confidence            999999999988899999999999999      88899985

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=7e-37  Score=218.17  Aligned_cols=107  Identities=26%  Similarity=0.527  Sum_probs=103.1

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      ||.+++.|+++++||+|+|++|++|+++|+||++|+ |+|++++||||++||||+|+       .++|||++++|++|++
T Consensus         1 Gv~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~-i~s~e~~eGdGg~GsIk~~~~~~~~~~~~~Kerie~iD~en~~   79 (155)
T d1icxa_           1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTT-EEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEeEEecCCHHHHhhhheeccchhchhhhhh-eeeeeEecCCCccceEEEEEeccCCceEEEEEEEEEEcccccE
Confidence            789999999999999999999999999999999986 99999999999999999999       6899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|++||||+|.+.|++|+++++++|.      ++|||++|
T Consensus        80 ~~y~viEGd~l~~~~~~~~~~~k~~~~------~~~g~i~k  114 (155)
T d1icxa_          80 YNYSIIGGEGLDESLEKISYESKILPG------PDGGSIGK  114 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEEC------GGGCEEEE
T ss_pred             EEEEEEecccccccEEEEEEEEEEecC------CCCCeEEE
Confidence            999999999988899999999999999      89999985

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=6.3e-36  Score=211.19  Aligned_cols=107  Identities=28%  Similarity=0.480  Sum_probs=102.0

Q ss_pred             ccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            2 GVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         2 ~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      |+.+++.|+++++||+|+|++|++|+++| |+++|+.|+|++++||||++||||.||       .++||||+++|++||+
T Consensus         1 gv~~~~~E~~~~v~a~k~~ka~~~d~~~l-~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~   79 (147)
T d1txca1           1 GVFVFRDETSSSVAPAKLYKALTKDSDTI-AQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLG   79 (147)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHTTHHHH-HHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEEEeccCCHHHHHHhhhcccccC-ccccccccccceeecCCCCcceEEEEEEcCCCcceEEEEEEEEEccCCcE
Confidence            78999999999999999999999999996 778899999999999999999999999       5899999999999999


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceeeC
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLMK  115 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~vk  115 (115)
                      ++|+++|||++...|++|+++++++|.      ++|||+||
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~------~~ggs~vk  114 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSFETKVVAG------SGGGSISK  114 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEEEEEEEEC------STTCEEEE
T ss_pred             EEEEEEccCccccceEEEEEEEEEecC------CCCCcEEE
Confidence            999999999988999999999999999      88999985

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=8.3e-22  Score=134.56  Aligned_cols=80  Identities=10%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEceeeeEEEeeecCCccEEEEEEEec
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVSTSMQSRVDALDRDNLYCKYTVFEE   82 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t~~~kEri~~vDe~~~~~~y~vieG   82 (115)
                      .++++.+++|++||+++|++| .+.+                 +|++        ....||||+++|++|++++|++|||
T Consensus         4 ~gkl~~eveik~~a~kf~~~~-~~~~-----------------~~~~--------~~~~KerVe~vD~en~sity~vieG   57 (120)
T d1vjha_           4 KGALSVKFDVKCPADKFFSAF-VEDT-----------------NRPF--------EKNGKTEIEAVDLVKKTMTIQMSGS   57 (120)
T ss_dssp             EEEEEEEEEESSCHHHHHHHH-HHHT-----------------TSCS--------STTCEEEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEEEEEecCCHHHHHHHh-hhcc-----------------CCCC--------CcccEEEEEEEcCCCCEEEEEEEee
Confidence            479999999999999999997 4333                 3443        1334999999999999999999999


Q ss_pred             CccCcceEEEEEEEEEEecccccccCCC-ceeeC
Q 044934           83 DCISDILELIVFQIKFGPYKLKKISSNA-SCLMK  115 (115)
Q Consensus        83 ~~l~~~~~s~~~~i~v~p~~~~~~~~~g-g~~vk  115 (115)
                      |++ +.|++|+++++|+|+      ++| ||+||
T Consensus        58 dvl-~~yksf~~~i~~~p~------~~g~gsi~k   84 (120)
T d1vjha_          58 EIQ-KYFKTLKGSIAVTPI------GVGDGSHVV   84 (120)
T ss_dssp             TGG-GTEEEEEEEEEEEEC------SSSSCEEEE
T ss_pred             ccc-cceeEEEEEEEEEec------CCCCceEEE
Confidence            987 999999999999999      777 89985

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.78  E-value=3.3e-18  Score=116.30  Aligned_cols=95  Identities=14%  Similarity=0.316  Sum_probs=83.1

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~v   79 (115)
                      .+.+.+++|+|||+++|++ +.|+.++ |+|+|. +.+++..+|    |++|.++    ..+.||++.+|+.++.++|++
T Consensus         2 ~~~~~si~I~A~pe~VW~~-v~df~~~-~~W~p~-v~~~~~~~~----G~~R~~~~~~g~~~~E~l~~~d~~~~~~~y~~   74 (138)
T d3cnwa1           2 AHTTTSMEIFGSPEQVWQL-IGGFNSL-PDWLPY-IPSSKLTEG----GRVRHLANPDGDTIIERLEVFNDKERYYTYSI   74 (138)
T ss_dssp             EEEEEEEEESSCHHHHHHH-HCCTTCG-GGTCTT-CSEEEEEGG----GTEEEEECTTCCEEEEEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEEEeCCHHHHHHH-HhCccch-HHHhcc-cceeEeecC----ceeEEEEecCCceeEEEEEEEeCCCcEEEEEE
Confidence            3578899999999999999 6999995 999995 889987543    8899998    689999999999999999999


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccCCC-ceee
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISSNA-SCLM  114 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~g-g~~v  114 (115)
                      ++|+.   +++.|..++++.|.      ++| +|.+
T Consensus        75 ~~~~~---p~~~~~~~~~l~p~------~~g~~t~v  101 (138)
T d3cnwa1          75 MNAPF---PVTNYLSTIQVKEG------TESNTSLV  101 (138)
T ss_dssp             EECSS---SEEEEEEEEEEEEC------SSTTCEEE
T ss_pred             ecCCC---cceeeEEEEEEEEC------CCCCeEEE
Confidence            99875   58999999999998      665 5765

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=4.4e-10  Score=74.52  Aligned_cols=88  Identities=19%  Similarity=0.194  Sum_probs=67.1

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc-----eeeeEEEeeecCCccEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS-----TSMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t-----~~~kEri~~vDe~~~~~~y~   78 (115)
                      .++.++.|+||++++|+. +.|+.++ |+|+|. +++++++++++ +.+.-..+.     .....++. .++.+..+.|+
T Consensus         2 ~v~~~~~I~ap~~~V~~~-l~D~~~~-~~w~p~-~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~   77 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRL-AKDLEGL-KPYLKE-VESLEVVAREGARTRSRWVAVAMGKKVRWLEEEE-WDDENLRNRFF   77 (146)
T ss_dssp             EEEEEEEESSCHHHHHHH-HHCHHHH-GGGCTT-EEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-EETTTTEEEEE
T ss_pred             EEEEEEEECCCHHHHHHH-HHChhhH-Hhhccc-cEEEEEEEecCCcceEEEEEEeeeeeEEEEEEEE-EcCCCCEEEEE
Confidence            478899999999999999 6999995 999996 99999987764 332222222     34455544 67899999999


Q ss_pred             EEecCccCcceEEEEEEEEEEec
Q 044934           79 VFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      +.+|+.     ..+..+.+++|.
T Consensus        78 ~~~g~~-----~~~~g~w~l~~~   95 (146)
T d2d4ra1          78 SPEGDF-----DRYEGTWVFLPE   95 (146)
T ss_dssp             EEEESC-----SEEEEEEEEEEC
T ss_pred             EccCCc-----ceEEEEEEEEec
Confidence            998863     346778899998

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.09  E-value=1.4e-09  Score=72.44  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=70.1

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc-------eeeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS-------TSMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t-------~~~kEri~~vDe~~~~~   75 (115)
                      .+.+.++.|+|||+++|+. +.|+.++ |.|+|+ +.++++++.++ +.++...+.       .....+ ...++.++.+
T Consensus         3 ~~~e~si~I~Ap~~~Vw~~-l~D~~~~-~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   78 (155)
T d2rera1           3 ARTDNSIVVNAPFELVWDV-TNDIEAW-PELFSE-YAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSH-RVPDKGSRTV   78 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHH-HTCGGGH-HHHCSS-EEEEEEEECCSSCEEEEEEECCCTTSCCCEEEEE-EEEEGGGTEE
T ss_pred             CEEEEEEEECCCHHHHHHH-HHChhhH-hhhhhh-ceEEEEeecCCCceEEEEEEEEeeeeeeEEEEEE-EEEcCCccEE
Confidence            4669999999999999999 6999995 999995 88888887654 444433332       233333 3477788888


Q ss_pred             EEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|....++    ....+..+.+|+|.       ++||.|
T Consensus        79 ~~~~~~~~----~~~~~~~~w~~~~~-------~~gT~v  106 (155)
T d2rera1          79 RAHRVETG----PFAYMNLHWTYRAV-------AGGTEM  106 (155)
T ss_dssp             EEEESSCT----TEEEEEEEEEEEEE-------TTEEEE
T ss_pred             EEEeecCc----cceeeEEEEEEeec-------CCccEE
Confidence            77775444    36778888999998       457754

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.06  E-value=3e-09  Score=69.65  Aligned_cols=93  Identities=6%  Similarity=0.044  Sum_probs=69.3

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCKYTVF   80 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~y~vi   80 (115)
                      +++.++.|+||++++|+. +.|+.++ |.|+|. +.+++. +|+.++|+...++    ..+..++..+++. +.+++...
T Consensus         2 ~~s~si~I~Ap~e~Vw~~-~~d~~~~-~~W~~~-~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~v~~~~p~-~~~~~~~~   76 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTY-YSQVNQW-FVWEGD-LEQISL-EGEFTTGQKGKMKMEDMPELAFTLVEVREN-QCFSDLTA   76 (137)
T ss_dssp             EEEEEEEESSCHHHHHHH-HHCGGGG-GGTSTT-EEEEEE-SSSSSTTCEEEEEETTSCCEEEEECCCBTT-TEEEEEEE
T ss_pred             ceEEEEEEcCCHHHHHHH-HhhhhhC-ccccCc-ccceee-cccccceEEEEEEEcCCcceeeeeecccCC-cEEEEEec
Confidence            688999999999999999 6999995 999995 889885 5666788888777    5567788888665 56777653


Q ss_pred             ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           81 EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        81 eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .+      ...+.....+.+.      ++|+|.+
T Consensus        77 ~~------~~~~~~~~~~~~~------~~g~t~v   98 (137)
T d2b79a1          77 TP------FGNVLFEHEILEN------PDGTISL   98 (137)
T ss_dssp             ET------TEEEEEEEEEEEC------TTSCEEE
T ss_pred             cc------ceeeeeEEEEccC------CCCcEEE
Confidence            32      2233344556777      6777765

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.94  E-value=1.1e-08  Score=66.23  Aligned_cols=98  Identities=13%  Similarity=0.230  Sum_probs=62.2

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCC-ccccEEEEc----eeeeEEEeeecCCccEEEEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYG-EVGSIEVVS----TSMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg-~~Gsir~~t----~~~kEri~~vDe~~~~~~y~   78 (115)
                      .+++++++|++||+++|+. +.|+.++ |.|+|+ +++++...+.. ..++.+...    ..........+.... ..+.
T Consensus         3 ~k~e~si~I~ap~e~Vw~~-l~D~~~~-~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   78 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEF-LTDPKRF-SRAFPG-FKSVEVEDGSFTIELRLSLGPLRGDARVRASFEDLEKPSK-ATVK   78 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHH-HTCHHHH-GGGSTT-EEEEEEETTEEEEEEEEESSSSEEEEEEEEEEEEEETTTE-EEEE
T ss_pred             EEEEEEEEEcCCHHHHHHH-HhCHhhh-hhcccc-hhheeecccccceeEEEEEEEEeeEeeeeeeeeeecCCcc-eeEE
Confidence            5899999999999999999 6999995 999996 88887644321 222222111    222333333344333 3344


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ......  .....+..++.++|.       ++||.+
T Consensus        79 ~~~~~~--~~~~~~~~~~~l~~~-------~~gt~v  105 (147)
T d2ns9a1          79 GSGRGA--GSTLDFTLRFAVEPS-------GGGSRV  105 (147)
T ss_dssp             EEEECS--SEEEEEEEEEEEEEE-------TTEEEE
T ss_pred             Eeeecc--ccceeeEEEEEEEec-------CCCcEE
Confidence            433332  346678888899997       556654

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.46  E-value=8.5e-07  Score=58.99  Aligned_cols=84  Identities=10%  Similarity=0.038  Sum_probs=61.7

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCCccEEEEEEEe
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRDNLYCKYTVFE   81 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~~~~~~y~vie   81 (115)
                      +.+.+++|++|++++|+. ..|+.+| |+|+|+ +.+++..+|+    ..+...   +..+-++.. |+.+..+.|+..+
T Consensus         6 ~~~~~i~I~~p~~~v~~~-~~d~~~~-p~w~~~-l~~~~~~~~~----~~~~~~~~~G~~~~~i~~-~~p~~~i~w~~~~   77 (133)
T d2qpva1           6 SRIIHLSVEKPWAEVYDF-AANPGNM-PRWAAG-LAGGLEADGE----DWIAKGGPLGEVRVNFAP-HNEFGVIDHVVTL   77 (133)
T ss_dssp             EEEEEEEESSCHHHHHHH-HHCGGGG-GGTCGG-GTTCCEEETT----EEEEECSSSCEEEEEECC-CCSSCBCCEEEEC
T ss_pred             EEEEEEEECCCHHHHHHH-HhChhhc-chhhhc-cceeEEecCC----cEEEEecCCCcEEEEEEE-cCCCCEEEEEEec
Confidence            556679999999999999 5999995 999996 7787766553    233333   556667764 7889999999987


Q ss_pred             cCccCcceEEEEEEEEEEec
Q 044934           82 EDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        82 G~~l~~~~~s~~~~i~v~p~  101 (115)
                      |+.-     ...+++++.|.
T Consensus        78 ~~~~-----~g~v~fr~~~~   92 (133)
T d2qpva1          78 PDGL-----KVYNALRVTPN   92 (133)
T ss_dssp             TTSC-----EEEEEEEEEEE
T ss_pred             CCCC-----EEEEEEEEccC
Confidence            7632     23446777776

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=98.37  E-value=4e-06  Score=54.61  Aligned_cols=98  Identities=11%  Similarity=0.047  Sum_probs=61.1

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEE-Ec-----eeeeEEEeeecCCccEEEEE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEV-VS-----TSMQSRVDALDRDNLYCKYT   78 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~-~t-----~~~kEri~~vDe~~~~~~y~   78 (115)
                      .++.+++|++|++++|+. +.|...+ |+++|. +++++.++.+...+.++. +.     -..+.++...+...... ..
T Consensus         2 n~s~~~~i~~~~e~v~~~-l~D~~~~-~~~~Pg-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~   77 (147)
T d2pcsa1           2 NGNGSIELKGTVEEVWSK-LMDPSIL-SKCIMG-CKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPPYHYK-LL   77 (147)
T ss_dssp             EEEEEEEEESCHHHHHHH-HTCHHHH-HHHSTT-EEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETTTEEE-EE
T ss_pred             CCCceEEeCCCHHHHHHH-HcCHHHH-HhhCcc-hhhceecCCCEEEEEEEEeecceeeeeEEEEEEeccCccccee-Ee
Confidence            467899999999999999 6999984 999996 789998876543444442 11     22344455555554432 22


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .-... . ...........+.+.      +++||.+
T Consensus        78 ~~~~~-~-~~~~~~~~~~~~~~~------~~~~T~v  105 (147)
T d2pcsa1          78 VNGEG-G-PGFVNAEGVIDLTPI------NDECTQL  105 (147)
T ss_dssp             EEEEE-T-TEEEEEEEEEEEEES------SSSEEEE
T ss_pred             ecccc-c-cchhcceeEEeeecc------cCCcEEE
Confidence            22211 1 334445555555565      5667765

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.37  E-value=5e-06  Score=55.85  Aligned_cols=100  Identities=11%  Similarity=-0.027  Sum_probs=65.6

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~~~   75 (115)
                      ..+..+.+|+||++++|++| .|... +++|++..--++...+.|..+|.--.+.        ..+.-++..+|+.++ +
T Consensus        12 ~~i~i~r~i~Ap~e~Vw~a~-tdpe~-l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~~r-l   88 (163)
T d1xuva_          12 QEIIITREFDAPRELVFKAF-TDPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPER-I   88 (163)
T ss_dssp             SEEEEEEEESSCHHHHHHHH-HCHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTTE-E
T ss_pred             ceEEEEEEeCCCHHHHHHHH-cChHH-hhhccCCCCccceeeeeeceeCceEEEEEEecCCCceEEEEEEEEecCCCE-E
Confidence            35778889999999999995 88777 5899753333445566776555443333        256778888988876 4


Q ss_pred             EEEEE-ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           76 KYTVF-EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        76 ~y~vi-eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .|+.- ++...  .-.....++.|++.      ++|++++
T Consensus        89 ~~tw~~~~~~~--~~~~~~v~~~~e~~------~~g~t~~  120 (163)
T d1xuva_          89 ISTFEFEGLPE--KGHVILDTARFEAL------PGDRTKL  120 (163)
T ss_dssp             EEEEEETTSSS--SCCCEEEEEEEEEE------TTTEEEE
T ss_pred             EEEEeccCCCC--CCCcEEEEEEEEEe------CCCcEEE
Confidence            45543 33322  22234577888888      6666654

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=97.92  E-value=9.2e-05  Score=48.24  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---------eeeeEEEeeecCCccE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---------~~~kEri~~vDe~~~~   74 (115)
                      .++..+..++||++++|++ +.|... +.+|++..--.+...++|-.+|.--.++         -.+.-++..+++.++ 
T Consensus         2 ~ti~~~r~i~ap~e~Vw~a-~Tdp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p~~~-   78 (143)
T d1z94a1           2 NTIRLHRVLSAPPERVYRA-FLDPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGER-   78 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHH-TTCHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETTTE-
T ss_pred             cEEEEEEEECCCHHHHHHH-hcCHHH-HhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcEEEEEEEEEEecCCeE-
Confidence            4677888999999999999 488776 5888753333444556776666544333         235567788888777 


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEec
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      +.|+--..+....  .....+++|.+.
T Consensus        79 i~~t~~~~~~~~~--~~~~v~~~l~~~  103 (143)
T d1z94a1          79 IRYTDRFDDAGLP--GDMITTITLAPL  103 (143)
T ss_dssp             EEEEEEESCCC-----CEEEEEEEEEE
T ss_pred             EEEEEeccCCCCC--CcEEEEEEEEEc
Confidence            4466543332211  234467888887

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.75  E-value=0.00021  Score=47.68  Aligned_cols=73  Identities=10%  Similarity=0.093  Sum_probs=48.4

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCccEE
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNLYC   75 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~~~   75 (115)
                      ..+..+..++||++++|++ +.|... +++|.+..--.+...++|..+|..-.+.        ..+.-++..+++.++. 
T Consensus         7 ~~i~ier~i~Ap~e~Vw~a-~tdpe~-l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p~~~i-   83 (164)
T d2il5a1           7 VEVEIEKLYKFSPELVYEA-WTKKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEYV-   83 (164)
T ss_dssp             EEEEEEEEESSCHHHHHHH-TTCHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTTEE-
T ss_pred             EEEEEEEEECCCHHHHHHH-HcCHHH-HhCcccCCCccceEEEeecccCceEEEEEecCCcceEEEEEEEEEEcCCCEE-
Confidence            4577788899999999999 588776 5888753323334455676666554333        2356677888776654 


Q ss_pred             EEEE
Q 044934           76 KYTV   79 (115)
Q Consensus        76 ~y~v   79 (115)
                      .|+.
T Consensus        84 ~~t~   87 (164)
T d2il5a1          84 KMTI   87 (164)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            3543

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=97.75  E-value=0.00013  Score=48.04  Aligned_cols=94  Identities=17%  Similarity=0.222  Sum_probs=61.8

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecC--C-ccccEEEEc-------eeeeEEEeeecCCccE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGY--G-EVGSIEVVS-------TSMQSRVDALDRDNLY   74 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGd--g-~~Gsir~~t-------~~~kEri~~vDe~~~~   74 (115)
                      +...+-.+++||+++|++ +.|..+. |+++|. .+++++++.+  + +......+.       .....+. ..+..+..
T Consensus         3 ~~~~~~vi~~~~e~vf~v-V~Dve~Y-p~FlP~-c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   78 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFEL-VGDVDAY-PKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRV-RRDKDARS   78 (148)
T ss_dssp             EEEEEEEESSCTHHHHHH-HTTTTCC-SSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEE-EEETTTCE
T ss_pred             cceEEEEeCCCHHHHHHH-HHHHHhh-hhhccc-cCccEEEecccccccceeeEEEEEEeeeeEEEEEEEe-eecCCceE
Confidence            345666899999999999 8999995 999995 8888887652  2 122222233       2333333 35677777


Q ss_pred             EEEEEEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           75 CKYTVFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        75 ~~y~vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      +.....+|.     ++.....-.+.|.      ++ ||.|
T Consensus        79 ~~~~~~~g~-----f~~l~~~W~f~~~------~~-~T~V  106 (148)
T d1t17a_          79 IDVSLLYGP-----FKRLNNGWRFMPE------GD-ATRV  106 (148)
T ss_dssp             EEEEESSTT-----SSCEEEEEEEEEE------TT-EEEE
T ss_pred             EEEeccCch-----hhhcccceeeccC------CC-ceEE
Confidence            766665443     3445566778887      44 6876

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.65  E-value=0.00021  Score=48.70  Aligned_cols=87  Identities=10%  Similarity=0.216  Sum_probs=57.1

Q ss_pred             cEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCCccEEEEEE
Q 044934            3 VLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRDNLYCKYTV   79 (115)
Q Consensus         3 ~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~~~~~~y~v   79 (115)
                      ...+..|..|++|+++||++ +.|... +++|.|. ..     .+|-.+|.--.+.   ....-++.++|+ ++.+.|+-
T Consensus        11 ~~~f~~er~i~ap~e~Vw~A-lTdpe~-l~~W~~~-~~-----~~d~~~GG~~~~~~~~~~~~~~v~~~ep-p~rL~~tW   81 (160)
T d2nn5a1          11 TIYFGTERAISASPQTIWRY-LTETDK-LKQWFPE-LE-----IGELGVNGFWRFILPDFEETMPFTDYAE-EKYLGVTW   81 (160)
T ss_dssp             EEEEEEEEEESSCHHHHHHH-HHCHHH-HHHHCTT-EE-----EEECSTTCEEEEEETTEEEEEEEEEEET-TTEEEEEE
T ss_pred             cEEEEEEEEecCCHHHHHHH-HcCHHH-HHhhCCC-CC-----cccccCCCeeEEEcCCCCcceEEEEEec-CCEEEEEe
Confidence            35678899999999999999 588777 5999985 22     2343344333343   445567777875 45566775


Q ss_pred             EecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           80 FEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        80 ieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                        |+-        ..+++++|.      ++|+|.+
T Consensus        82 --~~~--------~v~~eL~~~------~~~~t~l  100 (160)
T d2nn5a1          82 --DTG--------IIYFDLKEQ------APHQTLL  100 (160)
T ss_dssp             --TTE--------EEEEEEEEE------ETTEEEE
T ss_pred             --cCc--------eEEEEEecC------CCCeEEE
Confidence              221        246777776      5677754

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=97.64  E-value=0.00027  Score=45.80  Aligned_cols=85  Identities=12%  Similarity=0.109  Sum_probs=54.7

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCCccEEEEEEEe
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRDNLYCKYTVFE   81 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~~~~~~y~vie   81 (115)
                      .+..++.|+||++++|+| +.|... +++|.|..       +.+.++|..-.+.   ....=++..+++.+ .+.|+.-.
T Consensus         6 ~i~~~~~i~ap~e~Vw~a-lt~p~~-~~~W~~~~-------~~~~~~g~~~~~~~~~~~~~g~v~~~~~~~-~l~~~~~~   75 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEA-VSTSEG-LAFWFMEN-------DLKAETGHHFHLQSPFGPSPCQVTDVERPI-KLSFTWDT   75 (138)
T ss_dssp             CEEEEEEESSCHHHHHHH-TTSHHH-HHTTSCCB-------CCCSCTTCEEEEECSSCEEEEEEEEEETTT-EEEEEETT
T ss_pred             eEEEEEEECCCHHHHHHH-HcCHHH-hceEccCC-------cccccceeeEEecCCccceeEEEEEEeCCc-EEEEEecC
Confidence            478899999999999999 588776 58899852       1222344433333   34455667777665 45677522


Q ss_pred             cCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           82 EDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        82 G~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ++        ...++.++|.       ++||.+
T Consensus        76 ~~--------~~v~~~l~~~-------~~gT~l   93 (138)
T d1xn5a_          76 DG--------WSVTFHLKEE-------ENGTIF   93 (138)
T ss_dssp             TT--------EEEEEEEEEC-------SSSEEE
T ss_pred             CC--------eEEEEEEEEc-------CCcEEE
Confidence            22        2457778887       456654

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=97.42  E-value=0.00038  Score=45.82  Aligned_cols=86  Identities=12%  Similarity=0.086  Sum_probs=54.1

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCCccEEEEEEEe
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRDNLYCKYTVFE   81 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~~~~~~y~vie   81 (115)
                      .+..++.|+||++++|++ +.|... +.+|.+..  .     .+-.+|..-.+.   +...-++.++++.+ .+.|+--.
T Consensus         9 ~i~~~~~i~ap~e~Vw~a-lTdp~~-l~~W~~~~--~-----~~~~~G~~~~~~~~~g~~~g~v~~~~p~~-~l~~tw~~   78 (143)
T d1xn6a_           9 DIKQTIVFNASIQKVWSV-VSTAEG-IASWFMPN--D-----FVLEVGHEFHVQSPFGPSPCKVLEIDEPN-HLSFSWDT   78 (143)
T ss_dssp             CEEEEEEESSCHHHHHHT-TSCSHH-HHTTSCCB--C-----CCCCTTCEECBCCTTCCCCEEEEEEETTT-EEEEEETT
T ss_pred             eEEEEEEECCCHHHHHHH-hcChHH-hceEeecc--C-----cccccCceEEEeccccceeEEEEEEeCCc-EEEEEEcC
Confidence            478899999999999999 588777 58898742  1     122334332333   33445666776654 45677521


Q ss_pred             cCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           82 EDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        82 G~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      ++        ...++.++|.      ++|+|.+
T Consensus        79 ~~--------~~v~~~l~~~------~~G~T~l   97 (143)
T d1xn6a_          79 DG--------WVVSFDLKDL------GDNKTEF   97 (143)
T ss_dssp             TT--------EEEEEEEEEE------ETTEEEE
T ss_pred             CC--------cEEEEEEEEc------CCCcEEE
Confidence            11        2456777787      6676654

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=97.38  E-value=0.00021  Score=47.18  Aligned_cols=96  Identities=15%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccc-----eeeEEEEecCCccccEEEEc----eeeeEEEeeecCCccEEE
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQA-----FKSIVYEQGYGEVGSIEVVS----TSMQSRVDALDRDNLYCK   76 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~-----v~sve~~eGdg~~Gsir~~t----~~~kEri~~vDe~~~~~~   76 (115)
                      +..++.|+||++++|++| .|  . +++|.|..     +.+..+..+-|  |..+...    ....=++.++++.++ +.
T Consensus         6 v~~~~~i~Ap~e~Vf~a~-te--~-~~~Ww~~~~~~~~~~~~~~~~~~g--G~~~~~~~dG~~~~~g~v~ei~p~~r-l~   78 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTF-LE--G-FPEWWPNNFRTTKVGAPLGVDKKG--GRWYEIDEQGEEHTFGLIRKVDEPDT-LV   78 (155)
T ss_dssp             EEEEEEESSHHHHHHHHH-TT--C-SSSSSSGGGSTTTTCSSCEEETTT--TEEECCCTTTSCCCCEEEEEEETTTE-EE
T ss_pred             EEEEEEEeCCHHHHHHHH-Hh--h-hHhhcCCCCCCceEEEEEEeeCCC--ceEEEEccccceeeeEEEEEEecCcE-EE
Confidence            678999999999999997 45  3 47787643     33333333322  4443333    233346777777765 44


Q ss_pred             EEEE-ecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           77 YTVF-EEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        77 y~vi-eG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      |+-- .++.....-.....++.+++.      ++|||.+
T Consensus        79 ~tw~~~~~~~~~~~~~s~v~~~~~~~------~~~~T~l  111 (155)
T d1zxfa1          79 IGWRLNGFGRIDPDNSSEFTVTFVAD------GQKKTRV  111 (155)
T ss_dssp             EECCCSSSSSCCCSSCCCEEEEEEEE------TTTEEEE
T ss_pred             EEEecCCccccccccceEEEEEEEec------CCCCEEE
Confidence            5532 222111111123466777777      6777755

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.29  E-value=0.0013  Score=43.66  Aligned_cols=67  Identities=7%  Similarity=-0.072  Sum_probs=43.6

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc--------eeeeEEEeeecCCcc
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS--------TSMQSRVDALDRDNL   73 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t--------~~~kEri~~vDe~~~   73 (115)
                      .+..+.+++||++++|++| .|... +.+|.+..--.+...++|-.+|..-.+.        ....-++..+++.++
T Consensus         6 ~l~i~r~i~ap~e~Vw~a~-tdpe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~~r   80 (165)
T d1xfsa_           6 DLMLKRELAVPVNLVWRGL-TEPEL-LKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEKR   80 (165)
T ss_dssp             EEEEEEEESSCHHHHHHHH-HCHHH-HTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTTE
T ss_pred             EEEEEEEEcCCHHHHHHHH-cCHHH-HhhcCCCCCccceeecccceeCceEEEEEECCCCceeeEEEEEEEecCCcE
Confidence            5677889999999999995 88776 5888642222334456776565543332        234556777777654

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=97.21  E-value=0.0013  Score=42.40  Aligned_cols=93  Identities=11%  Similarity=0.036  Sum_probs=51.5

Q ss_pred             EEEEEEEeccCHHHHHHHHhcccccccccccc-cce----eeEEEEecCCccccEEEEc-----eeeeEEEeeecCCccE
Q 044934            5 RFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLP-QAF----KSIVYEQGYGEVGSIEVVS-----TSMQSRVDALDRDNLY   74 (115)
Q Consensus         5 ~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P-~~v----~sve~~eGdg~~Gsir~~t-----~~~kEri~~vDe~~~~   74 (115)
                      .+..+..+++|++++|++ +.|... +.+|++ +..    ...++.-+.|+........     ..+.-++..+++.++.
T Consensus         2 el~i~r~i~a~~e~Vw~a-~tdp~~-l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~rl   79 (143)
T d3elia1           2 DLRLEREFAVAPEALFAW-VSDGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQSV   79 (143)
T ss_dssp             EEEEEEEESSCHHHHHHH-TTCHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTEE
T ss_pred             eEEEEEEECCCHHHHHHH-hcCHHH-HhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcEEEEEEEEEEcCCCCEE
Confidence            466788899999999999 488777 477764 211    1111111112222222222     2355678888887654


Q ss_pred             -EEEEEEecCccCcceEEEEEEEEEEec
Q 044934           75 -CKYTVFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        75 -~~y~vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                       +++..-+.+.  ..-..-..++.++|.
T Consensus        80 ~~t~~~~~~~~--~~~~~~~vt~~l~~~  105 (143)
T d3elia1          80 GFTWGWHDDDD--RRGAESHVMFIVEPC  105 (143)
T ss_dssp             EEEEEEECTTS--CEEEEEEEEEECCBC
T ss_pred             EEEEeecCCCC--CCCCcEEEEEEEEEc
Confidence             3443443332  222333567788887

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0015  Score=42.54  Aligned_cols=95  Identities=8%  Similarity=0.134  Sum_probs=56.8

Q ss_pred             CccEEEEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEecCCcccc-EEEEceeeeEEEeeecCCccE-EEEE
Q 044934            1 MGVLRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGS-IEVVSTSMQSRVDALDRDNLY-CKYT   78 (115)
Q Consensus         1 m~~~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gs-ir~~t~~~kEri~~vDe~~~~-~~y~   78 (115)
                      |-..++..+.+++||++++|+|| .|... +.+|....      .+.|..+|. .+.+.+.+.=++..+++.++. +++.
T Consensus         1 ~~T~~i~~~r~~~ap~e~Vw~a~-tdpe~-l~~W~~~~------~~~d~~~Gg~f~~~~g~~~G~~~ev~p~~rlv~tw~   72 (132)
T d1x53a1           1 IPTCKITLKETFLTSPEELYRVF-TTQEL-VQAFTHAP------ATLEADRGGKFHMVDGNVSGEFTDLVPEKHIVMKWR   72 (132)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHT-TCHHH-HHHHSCSC------CBCCCSTTCCCBBTTTTEECCEEEEETTTEEEEEEE
T ss_pred             CCceEEEEEEEECCCHHHHHHHH-cCHHH-HHhhhCCc------cccccccCCEEEEEecceeEEEEEEeCCCEEEEEEe
Confidence            45678889999999999999995 88776 58898431      134433443 222223344456667776653 3444


Q ss_pred             EEecCccCcceEEEEEEEEEEecccccccCCCceee
Q 044934           79 VFEEDCISDILELIVFQIKFGPYKLKKISSNASCLM  114 (115)
Q Consensus        79 vieG~~l~~~~~s~~~~i~v~p~~~~~~~~~gg~~v  114 (115)
                      .-+.+.  ..++.  .++.++|.       ++||.+
T Consensus        73 ~~~~~~--~~~s~--vt~~l~~~-------~~~T~l   97 (132)
T d1x53a1          73 FKSWPE--GHFAT--ITLTFIDK-------NGETEL   97 (132)
T ss_dssp             ETTSCT--TCCEE--EEEECCBC-------SSCEEE
T ss_pred             cCCCCC--CCcEE--EEEEEEEC-------CCcEEE
Confidence            433221  23333  46677786       456754

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=96.12  E-value=0.019  Score=38.60  Aligned_cols=91  Identities=4%  Similarity=-0.024  Sum_probs=50.9

Q ss_pred             EEEEEEEEeccCHHHHHHHHhcccccccccccccc-e-----eeEEEEecC--Cc--cccEEEEc----eeeeEEEeeec
Q 044934            4 LRFDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQA-F-----KSIVYEQGY--GE--VGSIEVVS----TSMQSRVDALD   69 (115)
Q Consensus         4 ~~~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~-v-----~sve~~eGd--g~--~Gsir~~t----~~~kEri~~vD   69 (115)
                      .++..+..+++|+++||++ +.|... +.+|.+.. +     ..+.+.-++  ++  .+....-.    ..+.-++.++|
T Consensus        19 ~~l~~er~~~Ap~e~VW~A-lTdpe~-l~~W~~p~~~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~   96 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAW-LADADK-RARWLAGGELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLLRCE   96 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHH-HHCHHH-HTTTSCCCCCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEEEEEEE
T ss_pred             ceEEEEEEeCCCHHHHHHH-HhChHH-HhhhcCCCCccccCCCEEEEEecCCCCcccccccccccCCCceeEEEEEEEEe
Confidence            3577888999999999999 488777 58887531 0     011111111  10  00000000    24556788888


Q ss_pred             CCccEEEEEEEecCccCcceEEEEEEEEEEec
Q 044934           70 RDNLYCKYTVFEEDCISDILELIVFQIKFGPY  101 (115)
Q Consensus        70 e~~~~~~y~vieG~~l~~~~~s~~~~i~v~p~  101 (115)
                      +.++ +.|+.-.++.  ....  ..++.++|.
T Consensus        97 p~~r-l~~tw~~~~~--~~~s--~v~~~l~~~  123 (183)
T d2k5ga1          97 PPRV-LALTWGGGAG--EAPS--EVLFELSEA  123 (183)
T ss_dssp             TTTE-EEEECCCCSS--SSCC--EEEEEEEEC
T ss_pred             CCeE-EEEEeccCCC--CCcE--EEEEEEEEc
Confidence            7554 5677654433  2222  356777887

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.96  E-value=0.35  Score=32.26  Aligned_cols=64  Identities=11%  Similarity=0.122  Sum_probs=44.3

Q ss_pred             EEEEEEEeccCH---------HHHHHHHhcccccccccccccceeeEEEEecCCccccEEEEc---eeeeEEEeeecCC
Q 044934            5 RFDKDGSVAAAP---------SRMFKAFVIDSHNLFPKLLPQAFKSIVYEQGYGEVGSIEVVS---TSMQSRVDALDRD   71 (115)
Q Consensus         5 ~~~~ei~i~a~a---------~k~w~~~~~d~~~l~pk~~P~~v~sve~~eGdg~~Gsir~~t---~~~kEri~~vDe~   71 (115)
                      ++++-++||-|+         +++|+-++....+  |...-..+.+|++++.++ .+-.|.++   ..++|++....+.
T Consensus         2 ~feHlv~IN~p~~p~~p~LTr~QlW~GL~lrar~--p~~Fv~~l~~c~v~~~~~-~~~~Rel~fg~~~v~e~Vtl~~~~   77 (151)
T d2ffsa1           2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE--PQYFVVGLERFEILVDDG-DRLHRRLYLPGLVVEDEVVLKAPD   77 (151)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC--GGGTCTTCCEEEEEEECS-SEEEEEEEETTEEEEEEEEEETTT
T ss_pred             cceEEEecCCCCCCCCCccCHHHHHHHHHHhhcC--HhhcccccceEEEEEecC-CeEEEEEEECCceeEEEEEEcCCc
Confidence            467778887753         5999998655444  433333699999998754 35678887   7888888854433

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=3.1  Score=27.24  Aligned_cols=74  Identities=9%  Similarity=-0.024  Sum_probs=47.1

Q ss_pred             EEEEEEeccCHHHHHHHHhcccccccccccccceeeEEEEec-CCccccEEEEc-----------eeeeEEEeeecCCcc
Q 044934            6 FDKDGSVAAAPSRMFKAFVIDSHNLFPKLLPQAFKSIVYEQG-YGEVGSIEVVS-----------TSMQSRVDALDRDNL   73 (115)
Q Consensus         6 ~~~ei~i~a~a~k~w~~~~~d~~~l~pk~~P~~v~sve~~eG-dg~~Gsir~~t-----------~~~kEri~~vDe~~~   73 (115)
                      +-.+..+++|++++++.++.|... .++|-|. +.+.+++|- |...-.+....           .++-.|-...+++..
T Consensus        54 ~k~~~~i~~~~~~v~~~~~~d~e~-~~~Wd~~-~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~~  131 (214)
T d1em2a_          54 FILKTFLPCPAELVYQEVILQPER-MVLWNKT-VTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY  131 (214)
T ss_dssp             EEEEEEESSCHHHHHHHTTTCHHH-HTTTCTT-EEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEE
T ss_pred             EEEEEEEeCCHHHHHHHHHhChHH-HHHHHHH-HhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCcE
Confidence            456788999999999765678776 5999995 888888876 32211122211           344444444566666


Q ss_pred             EEEEEEEe
Q 044934           74 YCKYTVFE   81 (115)
Q Consensus        74 ~~~y~vie   81 (115)
                      .+....++
T Consensus       132 ~~~~~s~~  139 (214)
T d1em2a_         132 LSSGIATS  139 (214)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeec
Confidence            65555554