Citrus Sinensis ID: 044946

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MQRLNSFRNSQNFAIKSFFSFFSSVSKTPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAYKGHKL
cccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccHHHHHHHHHcccc
cccccccccccccHccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHcccEHHHccHHHHHccHHHHHHHcccHHHHHHHHHHccHHccccHHHHHHHHHccccHHHHHHHHHHccHHHHccccHHHccHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHccEEEEEcHHHcccHHHHHHHHHHHccccccccccHHEEcccHHHHHHHHHHHHHHHHHHHHHHHccccc
MQRLNSFRNSQNFAIKSFFSFFssvsktpntnsIFLNYLIEtvnipksrALVISNQFsriktlekpqtVSQFLhsvgfsdthiqlavhtkptilfADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDlvvidpeksgllrNIEYLKSCGIVGSQLSMLLVRLprlfcfndlKLRQLVLRVLDMgfttdsrmFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRmpccmmysienrvipryrVFQIVMVRRMLkkdwsfpsvlvlsEENFLNKYVLSFGDDAEELLLAYKGHKL
mqrlnsfrnsqNFAIKSFFSFFSSVSKTPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKilaedsnnedLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYsienrvipryRVFQIVMVRRMLKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAYKGHKL
MQRLNSFRNSQNFAIKsffsffssVSKTPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAYKGHKL
***********NFAIKSFFSFFSSVSKTPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAY*****
*********************************IFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAYKGHKL
********NSQNFAIKSFFSFFSSVSKTPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAYKGHKL
*****S***SQN*******************NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAYKGHK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQRLNSFRNSQNFAIKSFFSFFSSVSKTPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISNLERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAYKGHKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
225438585388 PREDICTED: uncharacterized protein LOC10 0.906 0.853 0.529 1e-97
296082490369 unnamed protein product [Vitis vinifera] 0.906 0.897 0.529 1e-97
255584420366 conserved hypothetical protein [Ricinus 0.915 0.912 0.502 8e-90
15238313391 Mitochondrial transcription termination 0.978 0.913 0.423 8e-70
21553423391 unknown [Arabidopsis thaliana] 0.978 0.913 0.423 8e-70
449462880319 PREDICTED: uncharacterized protein LOC10 0.827 0.946 0.410 3e-62
297794097382 hypothetical protein ARALYDRAFT_919822 [ 0.917 0.876 0.390 4e-59
356528284 1401 PREDICTED: uncharacterized protein LOC10 0.736 0.192 0.461 4e-58
225465339365 PREDICTED: uncharacterized protein LOC10 0.926 0.926 0.307 5e-45
225438045463 PREDICTED: uncharacterized protein LOC10 0.931 0.734 0.302 2e-43
>gi|225438585|ref|XP_002276330.1| PREDICTED: uncharacterized protein LOC100268158 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/342 (52%), Positives = 246/342 (71%), Gaps = 11/342 (3%)

Query: 32  NSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKP 91
           N I +NYLI+T    ++ A  ISN+F   K+ E PQ+V  FL  +GFS+ HI+ +V   P
Sbjct: 45  NPIIVNYLIQTFGFSQTLANSISNRFWWAKSTENPQSVIHFLRDLGFSEAHIRTSVRVGP 104

Query: 92  TILFADVNKTLKPKIAYFQQLGLVGSDLGKFIS--------NLERKLIPCVEILKKILAE 143
            ILF+D++KTLKPK+ +F+QLGLVG+DLGKFIS        +LE+KL+PC+EILKK L++
Sbjct: 105 QILFSDIDKTLKPKVQFFEQLGLVGADLGKFISKNSKVLTISLEKKLVPCIEILKKTLSD 164

Query: 144 DSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFND 203
           D NN DLIRV+RR +W   V+      LL NI +L+SCGIVGSQLSMLL R PRLF    
Sbjct: 165 DENNGDLIRVLRRCTW---VLSRNPELLLSNIAFLESCGIVGSQLSMLLTRQPRLFVIKQ 221

Query: 204 LKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIRT 263
             L+ LV R +DMGF+ +SRM V+ L  +  L ++T  +K +LFRS+GF+++ECIEM R 
Sbjct: 222 STLKDLVSRAVDMGFSIESRMLVYALYTISCLRDETLRKKFELFRSWGFTEQECIEMFRR 281

Query: 264 APRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRM 323
            P LL ASEE+LK G++FF+  ++F K +LV  P  +M S+E+RVIPRYRV QI+  +R+
Sbjct: 282 TPGLLRASEEKLKLGMEFFMNTMKFEKTLLVHRPTILMLSMEDRVIPRYRVLQILKSKRL 341

Query: 324 LKKDWSFPSVLVLSEENFLNKYVLSFGDDAEELLLAYKGHKL 365
           LK++ SF +VL L++E FL+K++  F DDAEELL+AYKGH L
Sbjct: 342 LKREPSFINVLSLTDEEFLDKFISRFADDAEELLVAYKGHTL 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082490|emb|CBI21495.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584420|ref|XP_002532942.1| conserved hypothetical protein [Ricinus communis] gi|223527293|gb|EEF29446.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|15238313|ref|NP_201300.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|8843759|dbj|BAA97307.1| unnamed protein product [Arabidopsis thaliana] gi|332010591|gb|AED97974.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553423|gb|AAM62516.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449462880|ref|XP_004149163.1| PREDICTED: uncharacterized protein LOC101214031 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297794097|ref|XP_002864933.1| hypothetical protein ARALYDRAFT_919822 [Arabidopsis lyrata subsp. lyrata] gi|297310768|gb|EFH41192.1| hypothetical protein ARALYDRAFT_919822 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356528284|ref|XP_003532734.1| PREDICTED: uncharacterized protein LOC100820280 [Glycine max] Back     alignment and taxonomy information
>gi|225465339|ref|XP_002271842.1| PREDICTED: uncharacterized protein LOC100252260 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225438045|ref|XP_002271737.1| PREDICTED: uncharacterized protein LOC100256578 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
TAIR|locus:2177734391 AT5G64950 "AT5G64950" [Arabido 0.895 0.836 0.441 8e-69
TAIR|locus:2142763405 AT5G07900 "AT5G07900" [Arabido 0.887 0.8 0.259 1.5e-35
TAIR|locus:2199612390 AT1G21150 "AT1G21150" [Arabido 0.898 0.841 0.244 2.3e-30
TAIR|locus:2102827450 AT3G46950 "AT3G46950" [Arabido 0.813 0.66 0.261 2.8e-22
TAIR|locus:2036878414 AT1G61990 "AT1G61990" [Arabido 0.715 0.630 0.28 6.5e-20
TAIR|locus:2036858418 AT1G61970 "AT1G61970" [Arabido 0.805 0.703 0.252 7.9e-18
TAIR|locus:2036813415 AT1G62010 "AT1G62010" [Arabido 0.715 0.628 0.270 1.8e-17
TAIR|locus:2036868418 AT1G61980 "AT1G61980" [Arabido 0.810 0.708 0.268 4.5e-17
TAIR|locus:1006230704461 AT1G62085 "AT1G62085" [Arabido 0.821 0.650 0.253 1.1e-16
TAIR|locus:2207265399 AT1G79220 [Arabidopsis thalian 0.778 0.711 0.271 2e-16
TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 152/344 (44%), Positives = 224/344 (65%)

Query:    31 TNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTK 90
             +N  F+ +L +     K  A+ I+ ++  +K+LE+P++V Q L S  FSDT IQ ++   
Sbjct:    37 SNPAFVEFLRDN-GFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDTQIQKSIRVH 95

Query:    91 PTILFADVNKTLKPKIAYFQQLGLVGSDLGKFIS--------NLERKLIPCVEILKKILA 142
             P ++F +V K L+PK+ +F+ +G  GS LGKF+S        +L +KLIP VEILK I+A
Sbjct:    96 PRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVA 155

Query:   143 EDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVGSQLSMLLVRLPRLFCFN 202
                 +EDL  ++ R  W L+  DP    LL NI YL++CGIVGSQL+ LL R PR+F  +
Sbjct:   156 P--KHEDLPVILSRCGWLLLSRDPNLF-LLPNISYLETCGIVGSQLASLLRRQPRIFNLS 212

Query:   203 DLKLRQLVLRVLDMGFTTDSRMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIEMIR 262
             + KLR  V R LD+GFT +SRM VH + +L  LSEKTFDRK+ LF + GFS++E  ++IR
Sbjct:   213 EEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIR 272

Query:   263 TAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRR 322
              +P L+  SE++L  G +F+LK++   +  L + PC + Y++E RVIPR +V QI+  + 
Sbjct:   273 RSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKG 332

Query:   323 ML----KKDWSFPSVLVLSEENFLNKYVLSFGDD-AEELLLAYK 361
             +L    KK  +   ++ ++EE FL KYV+ FGD+ AEELL+AYK
Sbjct:   333 LLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036878 AT1G61990 "AT1G61990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036813 AT1G62010 "AT1G62010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036868 AT1G61980 "AT1G61980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230704 AT1G62085 "AT1G62085" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207265 AT1G79220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019409001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (654 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
pfam02536345 pfam02536, mTERF, mTERF 2e-17
pfam02536345 pfam02536, mTERF, mTERF 2e-16
PLN03196487 PLN03196, PLN03196, MOC1-like protein; Provisional 3e-08
PLN03196487 PLN03196, PLN03196, MOC1-like protein; Provisional 8e-04
>gnl|CDD|217090 pfam02536, mTERF, mTERF Back     alignment and domain information 
 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 30/291 (10%)

Query: 73  LHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISN------- 125
           L S+GF+D+ I   +   P +L AD  K L+PK+ + Q  G   S+L K +S        
Sbjct: 4   LRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGK 63

Query: 126 -LERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKS--GLLRNIEYLKSCG 182
              + +    + LKKI+  D    D    + +    L    P+ +    +RN+  L+  G
Sbjct: 64  KGVKSISSVYDFLKKIIVADL---DKSSKLEKYPESL----PQGNNGNKIRNVSVLRELG 116

Query: 183 IVGSQLSMLLVRLPRLFCFNDLKLRQLVLRVLDMGF--TTDSRMFVHGLDALCRLSEKTF 240
           +    L  LL+  PR  C       + + +V++MGF  TT  R+       L   S+KT 
Sbjct: 117 VPPKLLFSLLISRPRPVC-GKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTI 175

Query: 241 DRKLDLFRSYGFSKEECIEMIRTAPRLLSASEER-LKSGLDFFLKKIEFGKAVLVRMPCC 299
              ++  +S GFS E+   +++  P LL +SE++ L++        +    +V+ +MP  
Sbjct: 176 KPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQF 235

Query: 300 MMYSIENRVIPRYRV-----FQIVMVRRMLKKDWSFPSVLVLSEENFLNKY 345
           + YS E +++ +        F    + +M+K+    P +L LS E    K 
Sbjct: 236 VSYS-EQKILNKIEFLLGLGFSREEIAKMVKR---CPQLLGLSVEKVKKKT 282

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345
>gnl|CDD|217090 pfam02536, mTERF, mTERF Back     alignment and domain information
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
PLN03196487 MOC1-like protein; Provisional 100.0
PF02536345 mTERF: mTERF; InterPro: IPR003690 This family curr 100.0
PLN03196487 MOC1-like protein; Provisional 100.0
PF02536345 mTERF: mTERF; InterPro: IPR003690 This family curr 100.0
KOG1267413 consensus Mitochondrial transcription termination 99.95
KOG1267413 consensus Mitochondrial transcription termination 99.72
smart0073331 Mterf Mitochondrial termination factor repeats. Hu 97.35
smart0073331 Mterf Mitochondrial termination factor repeats. Hu 97.08
PF11955335 PORR: Plant organelle RNA recognition domain; Inte 91.64
cd04790172 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma 90.24
PF04695136 Pex14_N: Peroxisomal membrane anchor protein (Pex1 84.23
>PLN03196 MOC1-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.5e-55  Score=438.11  Aligned_cols=305  Identities=20%  Similarity=0.380  Sum_probs=256.4

Q ss_pred             hHHHHHHhcCCCHHHHHHHHhhcccCCCC---CCchhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHHHHHH
Q 044946           35 FLNYLIETVNIPKSRALVISNQFSRIKTL---EKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQ  111 (365)
Q Consensus        35 ~v~yL~~~~Gls~~~~~~i~~~~p~l~~~---~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~fL~~  111 (365)
                      .++|| .++|++.+++.+++.++|.++..   .++.++++||+++|+++++|++++.++|.+|.+++++++.|+++||++
T Consensus       127 vl~fL-~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~  205 (487)
T PLN03196        127 VLDYL-EKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVS  205 (487)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHH
Confidence            34777 77888888888888888877643   356777888888888888888888888888888887778888888888


Q ss_pred             cCCCCchHHHHHHH--------hccccchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHHHHcCC
Q 044946          112 LGLVGSDLGKFISN--------LERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGI  183 (365)
Q Consensus       112 lGl~~~~i~~ll~~--------~~~~l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L~~lG~  183 (365)
                      +|++.++|++++.+        +++++.|+++||.++|++   .+++++++.++|++| ++++++ +++|++++|+++|+
T Consensus       206 lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~---~~~I~~il~~~P~iL-~~sle~-~lkp~v~~L~elGv  280 (487)
T PLN03196        206 IGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLP---RLAVARILEKRPYIL-GFDLEE-TVKPNVECLLEFGV  280 (487)
T ss_pred             cCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCC---HHHHHHHHHhCCcee-EcCHHH-hHHHHHHHHHHcCC
Confidence            88888888888777        567788888888888887   788888888888888 888876 78888888888888


Q ss_pred             ChhhHHHHhhhcCccceecc-hhHHHHHHHHH-hccCCCch--hhHhHHHHHHhccChhhHHHHHHHHHHhCCCHHHHHH
Q 044946          184 VGSQLSMLLVRLPRLFCFND-LKLRQLVLRVL-DMGFTTDS--RMFVHGLDALCRLSEKTFDRKLDLFRSYGFSKEECIE  259 (365)
Q Consensus       184 ~~~~i~~ll~~~P~~l~~s~-~~i~~~v~~l~-~lG~~~~~--~~~~~~~~~l~~~s~~~l~~~v~fL~~~G~s~~ev~~  259 (365)
                      +++.+..++.++|.+++.+. +++.+.++++. ++|+++++  .++.+.|. +.+.++++|+++++||+++||+.+++..
T Consensus       281 ~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~-il~lSe~kl~~kvefL~~~Gls~edI~~  359 (487)
T PLN03196        281 RKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQ-IVSLNRNVALKHVEFLRGRGFSAQDVAK  359 (487)
T ss_pred             CHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcch-hhcccHHHHHHHHHHHHHcCCCHHHHHH
Confidence            88888888888888888774 45777788774 68888776  23444454 4577899999999999999999999999


Q ss_pred             HHHhcCcccccCHHHHHHHHHHHHHhhCCChhhHhhcCcccccCCCCcchhHHHHHHHHHHhccccCCcCccchhccChH
Q 044946          260 MIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLKKDWSFPSVLVLSEE  339 (365)
Q Consensus       260 ~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~~~~~~l~~~l~~s~~  339 (365)
                      ||+++|++|++|.++|++|++||+++||++.++|+++|++|+||+|+||+|||+++   +++|+   .+++.++|.+||+
T Consensus       360 mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L---~~kGl---~~sL~~~L~~sd~  433 (487)
T PLN03196        360 MVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERV---AKKGI---KCSLAWFLNCSDD  433 (487)
T ss_pred             HHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHH---HHcCC---CCCHHHHhccCHH
Confidence            99999999999999999999999999999999999999999999999999999985   58998   5899999999999


Q ss_pred             hHHHHhhhcCCCC
Q 044946          340 NFLNKYVLSFGDD  352 (365)
Q Consensus       340 ~F~~~~v~~~~~~  352 (365)
                      +|+++||.+|.|+
T Consensus       434 ~F~~r~v~~y~e~  446 (487)
T PLN03196        434 KFEQRMSGDFIEG  446 (487)
T ss_pred             HHHHHHhhhcccc
Confidence            9999999999884

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions [] Back     alignment and domain information
>PLN03196 MOC1-like protein; Provisional Back     alignment and domain information
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions [] Back     alignment and domain information
>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only] Back     alignment and domain information
>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only] Back     alignment and domain information
>smart00733 Mterf Mitochondrial termination factor repeats Back     alignment and domain information
>smart00733 Mterf Mitochondrial termination factor repeats Back     alignment and domain information
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts Back     alignment and domain information
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators Back     alignment and domain information
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
3m66_A270 Crystal Structure Of Human Mitochondrial Transcript 4e-04
3opg_A298 Crystal Structure Of Human Mitochondrial Transcript 5e-04
>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270 Back     alignment and structure 
Iteration: 1

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 248 RSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFG----KAVLVRMPCCMMYS 303
            S  FSK +  +M+R AP LL+ S ERL + L FF K++E      + ++VR+P  +  S
Sbjct: 84  HSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGS 143
Query: 304 IE 305
           +E
Sbjct: 144 LE 145
>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
3m66_A270 Mterf3, mterf domain-containing protein 1, mitocho 3e-40
3m66_A270 Mterf3, mterf domain-containing protein 1, mitocho 4e-06
3mva_O343 Transcription termination factor, mitochondrial; a 6e-23
3mva_O 343 Transcription termination factor, mitochondrial; a 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270 Back     alignment and structure
 Score =  142 bits (359), Expect = 3e-40
 Identities = 49/298 (16%), Positives = 100/298 (33%), Gaps = 41/298 (13%)

Query: 66  PQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIAYFQQLGLVGSDLGKFISN 125
                Q L  +G   + I+        +L  D  K +K  + + + +G+  + LG F++ 
Sbjct: 5   HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTK 64

Query: 126 LERKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYLKSCGIVG 185
                         I +ED  N                       L   + YL S     
Sbjct: 65  NHA-----------IFSEDLEN-----------------------LKTRVAYLHSKNFSK 90

Query: 186 SQLSMLLVRLPRLFCFNDLKLRQLV---LRVLDMGFTTDSRMFVHGLDALCRLSEKTFDR 242
           + ++ ++ + P L  F+  +L   +    + L++       + V     L    E   + 
Sbjct: 91  ADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKEN 150

Query: 243 KLDLFRSYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMY 302
                   GF   E   MI   P++L+A++ +L    DF    +     ++V+ P     
Sbjct: 151 MKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNT 210

Query: 303 SIENRVIPRYRVFQIVMVRRMLKKD---WSFPSVLVLSEENFLNKYVLSFGDDAEELL 357
            +  +V  R+     +   +         S   ++ + +E F  +   +   D E+ L
Sbjct: 211 RLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFL 267
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270 Back     alignment and structure
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343 Back     alignment and structure
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
3mva_O343 Transcription termination factor, mitochondrial; a 100.0
3m66_A270 Mterf3, mterf domain-containing protein 1, mitocho 100.0
4fp9_B335 Mterf domain-containing protein 2; modification en 100.0
3mva_O343 Transcription termination factor, mitochondrial; a 100.0
3m66_A270 Mterf3, mterf domain-containing protein 1, mitocho 99.97
4fp9_B335 Mterf domain-containing protein 2; modification en 99.91
4fzv_B239 Mterf domain-containing protein 2; mterf fold, met 99.28
4fzv_B239 Mterf domain-containing protein 2; mterf fold, met 97.85
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 91.81
3ff5_A54 PEX14P, peroxisomal biogenesis factor 14; protein 90.19
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 84.85
2w84_A70 Peroxisomal membrane protein PEX14; zellweger synd 83.88
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 83.65
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 81.84
3ff5_A54 PEX14P, peroxisomal biogenesis factor 14; protein 81.63
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Back     alignment and structure
Probab=100.00  E-value=4.4e-52  Score=400.22  Aligned_cols=303  Identities=14%  Similarity=0.191  Sum_probs=268.2

Q ss_pred             CCCCCchhHHHHHHhcCCCHHHHHHHHhhcccCCCCCCchhHHHHHHhCCCChHHHHHHHHhCCcceecCccCcHHHHHH
Q 044946           28 TPNTNSIFLNYLIETVNIPKSRALVISNQFSRIKTLEKPQTVSQFLHSVGFSDTHIQLAVHTKPTILFADVNKTLKPKIA  107 (365)
Q Consensus        28 ~~~~~~~~v~yL~~~~Gls~~~~~~i~~~~p~l~~~~~~~~~~~~L~~lG~s~~~i~~li~~~P~lL~~~~~~~l~p~l~  107 (365)
                      ++..+..+|+|| .++|++.+++.++..++ ++.++++++++++||+++|++++||++++.++|.+|.++++ ++.|+++
T Consensus        15 ~~~~~~~~v~~L-~s~Gl~~~~~~~~~p~l-~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~   91 (343)
T 3mva_O           15 EPLKNEDLLKNL-LTMGVDIDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWD   91 (343)
T ss_dssp             -----CCHHHHH-HHHTCCHHHHHHHCGGG-GGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHH
T ss_pred             CccccHHHHHHH-HHcCCCHHHHHHhCchh-hccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHH
Confidence            344467788999 89999999988876666 66678999999999999999999999999999999999976 7999999


Q ss_pred             HHHHcCCCCchHHHHHHH--------hc-cccchhHHHHHHHhccCCCchHHHHHHHhccccccccCCCCcchhchHHHH
Q 044946          108 YFQQLGLVGSDLGKFISN--------LE-RKLIPCVEILKKILAEDSNNEDLIRVIRRMSWDLVVIDPEKSGLLRNIEYL  178 (365)
Q Consensus       108 fL~~lGl~~~~i~~ll~~--------~~-~~l~p~v~fL~~~g~~~~~~~~v~~~l~~~P~iL~~~s~e~~~l~~~v~~L  178 (365)
                      ||+++|++++++++++.+        .+ +++.|+++||+++|++   ++++++++.++|++| ++++++  .++++++|
T Consensus        92 fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~---~~~i~~ll~~~P~il-~~~~e~--~~~~v~~L  165 (343)
T 3mva_O           92 LWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLT---RKCLCRLLTNAPRTF-SNSLDL--NKQMVEFL  165 (343)
T ss_dssp             HHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCC---HHHHHHHHHHCGGGG-TSCHHH--HHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCC---HHHHHHHHHhCChhh-eeCHHH--hhHHHHHH
Confidence            999999999999999988        33 4899999999999999   999999999999999 999997  59999999


Q ss_pred             HHcCCC------hhhHHHHhhhcCccceecchhHHHHHHHHH-hccCCCch--hhHhHHHHHHhccChhhHHHHHHHHH-
Q 044946          179 KSCGIV------GSQLSMLLVRLPRLFCFNDLKLRQLVLRVL-DMGFTTDS--RMFVHGLDALCRLSEKTFDRKLDLFR-  248 (365)
Q Consensus       179 ~~lG~~------~~~i~~ll~~~P~~l~~s~~~i~~~v~~l~-~lG~~~~~--~~~~~~~~~l~~~s~~~l~~~v~fL~-  248 (365)
                      +++|++      .+.|.++++++|.++++++++++++++|++ ++|++++.  .++.+.++.+...+.+.+++++.|+. 
T Consensus       166 ~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e  245 (343)
T 3mva_O          166 QAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKE  245 (343)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHH
T ss_pred             HHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHH
Confidence            987764      788999999999999999889999999999 59999964  33333344444567788999987776 


Q ss_pred             ---HhCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhhCCChhhHhhcCcccccCCCCcchhHHHHHHHHHHhcccc
Q 044946          249 ---SYGFSKEECIEMIRTAPRLLSASEERLKSGLDFFLKKIEFGKAVLVRMPCCMMYSIENRVIPRYRVFQIVMVRRMLK  325 (365)
Q Consensus       249 ---~~G~s~~ev~~~i~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~~  325 (365)
                         ++||+++|+.+|+.++|++|++|.|+|++|++||.+ ||++.++|+++|++|+||+| ||+|||++   |+++|+  
T Consensus       246 ~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~---L~~~g~--  318 (343)
T 3mva_O          246 KLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKE---LVNAGC--  318 (343)
T ss_dssp             HHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHH---HHTTTC--
T ss_pred             HHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHH---HHHCCC--
Confidence               699999999999999999999999999999999998 99999999999999999999 99999965   568898  


Q ss_pred             CCcCcc--chhccChHhHHHHhhh
Q 044946          326 KDWSFP--SVLVLSEENFLNKYVL  347 (365)
Q Consensus       326 ~~~~l~--~~l~~s~~~F~~~~v~  347 (365)
                       +++++  ++|.+||++|.++|.+
T Consensus       319 -~~~~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          319 -NLSTLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             -CSSSSCGGGGGSCHHHHHHHHHH
T ss_pred             -CCCCCcchhhcCCHHHHHHHHhc
Confidence             46666  9999999999999975
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Back     alignment and structure
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Back     alignment and structure
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Back     alignment and structure
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} Back     alignment and structure
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus} Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Back     alignment and structure
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00