Citrus Sinensis ID: 044947
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 404 | ||||||
| 118481049 | 456 | unknown [Populus trichocarpa] | 0.948 | 0.839 | 0.573 | 1e-129 | |
| 224101421 | 424 | predicted protein [Populus trichocarpa] | 0.948 | 0.903 | 0.573 | 1e-129 | |
| 224108924 | 385 | predicted protein [Populus trichocarpa] | 0.945 | 0.992 | 0.569 | 1e-127 | |
| 356502586 | 406 | PREDICTED: uncharacterized glycosyltrans | 0.943 | 0.938 | 0.544 | 1e-117 | |
| 224108926 | 386 | predicted protein [Populus trichocarpa] | 0.940 | 0.984 | 0.547 | 1e-116 | |
| 255542124 | 394 | glycosyltransferase, putative [Ricinus c | 0.915 | 0.939 | 0.523 | 1e-113 | |
| 186499036 | 455 | Glycosyltransferase family 61 protein [A | 0.965 | 0.857 | 0.495 | 1e-112 | |
| 186499027 | 451 | Glycosyltransferase family 61 protein [A | 0.965 | 0.864 | 0.495 | 1e-112 | |
| 4335762 | 393 | unknown protein [Arabidopsis thaliana] | 0.950 | 0.977 | 0.497 | 1e-111 | |
| 357487363 | 451 | Glycosyltransferase, putative [Medicago | 0.960 | 0.860 | 0.5 | 1e-109 |
| >gi|118481049|gb|ABK92478.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/389 (57%), Positives = 289/389 (74%), Gaps = 6/389 (1%)
Query: 14 ITCDRSHRSYDLCLINGSALFDPKTSTFFSVGHTDSTPSQPSLRIKTQPYPRKSDKSAMS 73
ITCD SH YD+ ING L DP TSTFF++G T+STP + +K PYPRK+DK+A S
Sbjct: 70 ITCDCSHGYYDVWSINGPTLLDPITSTFFAIGATNSTPLDST--VKFHPYPRKTDKNAKS 127
Query: 74 KVKELTITTSAPPNLSCGVTHTSPALVFSAGGYNGNFFHEFMDCFVPLFITINSHFPDQD 133
KV ELT+T SAPP SCG+ H+SPA+VFS GGY GNF+H+F D +PL+ITINS DQD
Sbjct: 128 KVNELTLT-SAPPKSSCGIRHSSPAIVFSTGGYTGNFYHQFNDGLLPLYITINSLTLDQD 186
Query: 134 VILAIADCNDQWARKYAELLPRFTRHPIININNQTITHCFQSVTLGLISHGRMVINPTLL 193
VIL + + +D WA+KYA+LL +FTRHPI+N++NQT THCF S +GL++HG +V++P LL
Sbjct: 187 VILVVTNWSDWWAKKYADLLHQFTRHPIVNMDNQTRTHCFPSAIVGLMTHGPLVVDPRLL 246
Query: 194 PKPKTLVDFQSFLANAYNENTN---TSSSFHHTKPKLVLVNRNARVGRTILNLREVKKAA 250
P+ KTL+DF + L N Y N TS +P+LVLVNR VGR ILNL+EV KA
Sbjct: 247 PRNKTLLDFHALLQNTYGPRGNYLSTSGKSKGARPQLVLVNRKNGVGREILNLKEVLKAI 306
Query: 251 EELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQVVPIGTQ 310
+E+GF +FEP+ + S+ +++R +H HAM+ VHGA +TH LFLR G+V+ ++VPIGT
Sbjct: 307 KEVGFKAIVFEPKRNASVRETYRLLHGSHAMLAVHGAAMTHLLFLRVGTVVGEIVPIGTD 366
Query: 311 WLSTVYFEKPARVLGLEYLEYKIKQEESSLVEKYGANDLVLKNPQAFAGANWSNMRVYLK 370
W + ++EKPARVLGLEY++YKI+ ESSL EKY NDLVLKNP AF N++ VY+K
Sbjct: 367 WPAKTFYEKPARVLGLEYMKYKIEVNESSLAEKYRVNDLVLKNPSAFVNGNYTKAMVYMK 426
Query: 371 TQNVKLDIDRFRIYLKDAYKKAKKLMDKE 399
TQNVKLDI RFR YLK+A+ KA++ MDKE
Sbjct: 427 TQNVKLDIVRFRAYLKEAFVKAQRFMDKE 455
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101421|ref|XP_002312272.1| predicted protein [Populus trichocarpa] gi|222852092|gb|EEE89639.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224108924|ref|XP_002315017.1| predicted protein [Populus trichocarpa] gi|222864057|gb|EEF01188.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356502586|ref|XP_003520099.1| PREDICTED: uncharacterized glycosyltransferase AER61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224108926|ref|XP_002315018.1| predicted protein [Populus trichocarpa] gi|222864058|gb|EEF01189.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255542124|ref|XP_002512126.1| glycosyltransferase, putative [Ricinus communis] gi|223549306|gb|EEF50795.1| glycosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|186499036|ref|NP_001118256.1| Glycosyltransferase family 61 protein [Arabidopsis thaliana] gi|330250598|gb|AEC05692.1| Glycosyltransferase family 61 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|186499027|ref|NP_178435.2| Glycosyltransferase family 61 protein [Arabidopsis thaliana] gi|330250597|gb|AEC05691.1| Glycosyltransferase family 61 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|4335762|gb|AAD17439.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|357487363|ref|XP_003613969.1| Glycosyltransferase, putative [Medicago truncatula] gi|355515304|gb|AES96927.1| Glycosyltransferase, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 404 | ||||||
| TAIR|locus:2063809 | 455 | AT2G03360 [Arabidopsis thalian | 0.928 | 0.824 | 0.493 | 9.1e-100 | |
| TAIR|locus:2063793 | 452 | AT2G03370 [Arabidopsis thalian | 0.893 | 0.798 | 0.490 | 2e-95 | |
| TAIR|locus:2062709 | 500 | AT2G41640 [Arabidopsis thalian | 0.900 | 0.728 | 0.369 | 2.4e-69 | |
| TAIR|locus:2082598 | 504 | AT3G57380 [Arabidopsis thalian | 0.898 | 0.720 | 0.355 | 3.7e-64 | |
| TAIR|locus:2076274 | 494 | AT3G10320 [Arabidopsis thalian | 0.923 | 0.755 | 0.352 | 6e-64 | |
| TAIR|locus:2092757 | 384 | AT3G18170 [Arabidopsis thalian | 0.883 | 0.929 | 0.344 | 1.6e-54 | |
| TAIR|locus:2092762 | 470 | AT3G18180 [Arabidopsis thalian | 0.866 | 0.744 | 0.336 | 3.1e-51 | |
| UNIPROTKB|F1SFQ3 | 527 | EOGT "Uncharacterized protein" | 0.643 | 0.493 | 0.233 | 3.6e-10 | |
| UNIPROTKB|A0JND3 | 527 | EOGT "EGF domain-specific O-li | 0.643 | 0.493 | 0.230 | 7.8e-10 | |
| UNIPROTKB|A8K2U1 | 426 | EOGT "cDNA FLJ75139" [Homo sap | 0.665 | 0.631 | 0.226 | 1.1e-09 |
| TAIR|locus:2063809 AT2G03360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 191/387 (49%), Positives = 266/387 (68%)
Query: 2 KLRPAALSPAKSITCDRSHRSYDLCLINGSALFDPKTSTFFSVGHTDSTPSQPSLRIKTQ 61
K P ++ + ITCDRSH SYDLC INGS + +PKT T + T +T S P + K +
Sbjct: 57 KQNPKVMAASAKITCDRSHTSYDLCSINGSCILNPKTGTLTLMDRTLTT-SAPLVE-KIR 114
Query: 62 PYPRKSDKSAMSKVKELTITTSAPPNL--SCGVTHTSPALVFSAGGYNGNFFHEFMDCFV 119
PYPRKS+ M +++EL +T S P +L SC +TH SPA+VFSAGGY G+ +H+F+D F+
Sbjct: 115 PYPRKSENWIMPRIRELKLT-SGPSDLTRSCDITHDSPAIVFSAGGYTGSIYHDFIDGFI 173
Query: 120 PLFITINSHFPDQDVILAIADCNDQWARKYAELLPRFTRHPIININ--NQTITHCFQSVT 177
PLFIT NS +PD+D IL + + + W KY ++L F++H I ++ N +ITHCF S T
Sbjct: 174 PLFITANSVYPDRDFILVVVNPKEWWMPKYIDILGTFSKHKTILLDKENASITHCFTSAT 233
Query: 178 LGLISHGRMVINPTLLPKPKTLVDFQSFLANAYNENTNTSSSFHHTKPKLVLVNRNARVG 237
+GLISHG M I+PT +P K+LVDF + L A N N S KP+L+LV R +G
Sbjct: 234 VGLISHGPMTIDPTQIPNSKSLVDFHNLLDKALNPNL---SIIKINKPRLILVRRYGNIG 290
Query: 238 RTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLRP 297
R ILN E+++ E++GF+V F P ++TSL ++++ I S H M+GVHGA LT LFLRP
Sbjct: 291 RVILNEEEIREMLEDVGFEVITFRPSKTTSLREAYKLIKSSHGMIGVHGAALTQLLFLRP 350
Query: 298 GSVLMQVVPIGTQWLSTVYFEKPARVLGLEYLEYKIKQEESSLVEKYGANDLVLKNPQAF 357
GSVL+Q+VP+G W+S FE PA+ + L+Y EY++ EESSL+EKY +DLVLK+P A+
Sbjct: 351 GSVLVQIVPVGLGWVSKTCFETPAKAMKLDYTEYRVNVEESSLIEKYSRDDLVLKDPIAY 410
Query: 358 AGANWS--NMRVYLKTQNVKLDIDRFR 382
G +W+ M+VYLK Q+V+LD++RFR
Sbjct: 411 RGMDWNVTKMKVYLKDQDVRLDVNRFR 437
|
|
| TAIR|locus:2063793 AT2G03370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2062709 AT2G41640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2082598 AT3G57380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076274 AT3G10320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092757 AT3G18170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092762 AT3G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SFQ3 EOGT "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A0JND3 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A8K2U1 EOGT "cDNA FLJ75139" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00080863 | SubName- Full=Putative uncharacterized protein; (425 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 404 | |||
| pfam04577 | 206 | pfam04577, DUF563, Protein of unknown function (DU | 2e-19 | |
| COG4421 | 368 | COG4421, COG4421, Capsular polysaccharide biosynth | 4e-04 |
| >gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563) | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-19
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 26/223 (11%)
Query: 108 GNFFHEFMDCFVPLFITINSHFPDQDVILAIADCND--QWARKYAELLPRFTRHPIININ 165
NF H +D F+P + D D+I+ I D + R++ ELL I +
Sbjct: 1 NNFGHWLLD-FLPRLWLLPEEILDDDIIVLIPDSGSPPPFIREFLELLG--IPEDRIVLK 57
Query: 166 NQTITHCFQSVTLGLISHGRMVINPTLLPKPKTLVDFQSFLANAYNENTNTSSSFHHTKP 225
R+++ P L + E N S KP
Sbjct: 58 YDEPVRV-----------ERLIVPSPPFPAGGYFGPLLPRLRDLLRERFNLSK----IKP 102
Query: 226 KLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVH 285
+ V ++R R ILN E+++A + GF I +PE SL + + S +VG H
Sbjct: 103 RKVYISRKKAGRRRILNEDELEEALPKYGF--EIVDPET-LSLEEQVKLFSSAKVIVGPH 159
Query: 286 GAGLTHSLFLRPGSVLMQVVPIGTQWLSTVYFEKPARVLGLEY 328
G+ LT+ +F+ PG+ ++++VP F A +LGL+Y
Sbjct: 160 GSALTNLIFMPPGTGVVELVPPNRLDP---SFRNLAALLGLDY 199
|
Family of uncharacterized proteins. Length = 206 |
| >gnl|CDD|226845 COG4421, COG4421, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 404 | |||
| KOG4698 | 475 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF04577 | 206 | DUF563: Protein of unknown function (DUF563); Inte | 99.97 | |
| COG4421 | 368 | Capsular polysaccharide biosynthesis protein [Carb | 99.84 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.18 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.52 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 86.45 |
| >KOG4698 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-77 Score=599.85 Aligned_cols=383 Identities=35% Similarity=0.638 Sum_probs=353.6
Q ss_pred CCCCCCCceecCCCCCccceEEecceEecCCceEEEEEcCCCCCCCCCCCCcccCCCCCCCcccccCCceeEEEecCC-C
Q 044947 7 ALSPAKSITCDRSHRSYDLCLINGSALFDPKTSTFFSVGHTDSTPSQPSLRIKTQPYPRKSDKSAMSKVKELTITTSA-P 85 (404)
Q Consensus 7 ~~~~~~~~~C~~~~~~~d~C~~~gd~r~~~~~~~~~~~~~~~~~~~~~~~~~~i~py~rk~~~~~m~~v~e~~v~~~~-~ 85 (404)
...+.+.++||+++.++|+|+++||+|+|+.++++++....... +..+.+|+||||+||||.++|+.|+|++|.... .
T Consensus 79 ~~~e~~~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~~-~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~ 157 (475)
T KOG4698|consen 79 SALEDSSFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLLT-FSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGS 157 (475)
T ss_pred cccCCceEEeeccccccchhhhcCccccCcchhhhhhhccchhh-hccccchhcccccccccccccccccccceEEcCCc
Confidence 34566779999999999999999999999999999887653221 235789999999999999999999999997443 5
Q ss_pred CCCCCceEecccEEEEeeCCCCCCchhhhhhhhhhHHHhhh--hcCCCCCEEEEEcCCCchhhhHHHHHHHhhcCCCcee
Q 044947 86 PNLSCGVTHTSPALVFSAGGYNGNFFHEFMDCFVPLFITIN--SHFPDQDVILAIADCNDQWARKYAELLPRFTRHPIIN 163 (404)
Q Consensus 86 ~~~~C~~~~~~Pavv~s~~gy~~N~~H~~~D~liPlf~t~~--~~~~~~~v~lvi~d~~~~w~~~y~~ll~~lS~~~ii~ 163 (404)
...+|+++|++|+++|++|||++|.||+|+|+++|||+|.+ .| +++++++|++.++||..+|.+++++||+||+++
T Consensus 158 ~~r~c~v~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~--n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~ 235 (475)
T KOG4698|consen 158 EIRRCDVNHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRF--NKEVQFLITETHSWWDMKFGDVVRQLSNYPVVD 235 (475)
T ss_pred ccceeeeecccchheeecCCcchhhHHHHHhhhhhhhcccchhcc--cccEEEEEEEcchhhhhhHHHHHHhcCCCceEE
Confidence 67899999999999999999999999999999999999999 56 999999999999999999999999999999999
Q ss_pred ccCCCceeeeceeEEeccccCCccccCCCCCCC--ccHHHHHHHHHhhcCCCCC----CCCCCCCCCCEEEEEecCCCCC
Q 044947 164 INNQTITHCFQSVTLGLISHGRMVINPTLLPKP--KTLVDFQSFLANAYNENTN----TSSSFHHTKPKLVLVNRNARVG 237 (404)
Q Consensus 164 l~~~~~~~CF~~~ivGl~~h~~l~idp~~~p~~--~~~~~F~~fl~~~~~~~~~----~~~~~~~~~prv~~i~R~~~~~ 237 (404)
++++..+|||++++|||..|.++.+||+..+++ .+|.+|++++..+|+++.. +...+ .++||+++++|.++
T Consensus 236 ~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~~-~kkpri~~lsR~~~-- 312 (475)
T KOG4698|consen 236 FDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPEP-WKKPRITILSRAGS-- 312 (475)
T ss_pred ecCCceEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcCh-hhCCceEEEecccc--
Confidence 999999999999999999999999999988765 8999999999999997442 22223 56799999999999
Q ss_pred ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhccCCCcEEEEEeeCC-cccccccc
Q 044947 238 RTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLFLRPGSVLMQVVPIG-TQWLSTVY 316 (404)
Q Consensus 238 R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF~~pgs~vIEI~P~g-~~w~~~~~ 316 (404)
|.|+||+||.+++++.||+|.+++++. .++.+|+++.+++|||+|+|||||||++|+||++++|||.|+| .+|.+..+
T Consensus 313 r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a 391 (475)
T KOG4698|consen 313 RAILNEDELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLA 391 (475)
T ss_pred hhhhcchhhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhh
Confidence 999999999999999999999999974 9999999999999999999999999999999999999999999 99999999
Q ss_pred hHhHHhhcCCeEEEEEeccccchhhhhcCCCCccccCcccccCCCcc--cceeecCCCceEEehHHHHHHHHHHHHHHHH
Q 044947 317 FEKPARVLGLEYLEYKIKQEESSLVEKYGANDLVLKNPQAFAGANWS--NMRVYLKTQNVKLDIDRFRIYLKDAYKKAKK 394 (404)
Q Consensus 317 y~~lA~~~gl~Y~~y~i~~~Essl~~~y~~~~~~~~dP~~~~~~gw~--~~~~yl~~qdv~vdi~rf~~~L~~a~~~l~~ 394 (404)
|..+|+.|+++|.+|+|.++||+|.++||.|+++..||.+..++||+ .+.+||..|+|++|+.||++.+.+|++.++.
T Consensus 392 ~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~~~ 471 (475)
T KOG4698|consen 392 RLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKEIT 471 (475)
T ss_pred hccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 4489999999999999999999999988876
Q ss_pred hh
Q 044947 395 LM 396 (404)
Q Consensus 395 ~~ 396 (404)
++
T Consensus 472 ~~ 473 (475)
T KOG4698|consen 472 QL 473 (475)
T ss_pred hh
Confidence 64
|
|
| >PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61 | Back alignment and domain information |
|---|
| >COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 404 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 49/356 (13%), Positives = 96/356 (26%), Gaps = 89/356 (25%)
Query: 106 YNGNFFHEFMDCFVP---LFITINSHF----PDQDVI-----------LAIADCNDQWAR 147
YN N F V ++ + P ++V+ +A+ C
Sbjct: 120 YNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--- 174
Query: 148 KYAELLPRFTRHPI--ININNQTITHCFQSVTLGLISHGRMVINPTLLPKPKTL-VDFQS 204
++ + I +N+ N T+L + L
Sbjct: 175 ---KVQCKMDFK-IFWLNLKNCNSPE-------------------TVLEMLQKLLYQIDP 211
Query: 205 FLANAYNENTNTSSSFHHTKPKLVLVNRNARVGRTILNLREV--KKAAEELGFDVTIFEP 262
+ + ++N H + +L + ++ +L L V KA I
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 263 EESTSLADSFRFIHSCHAMVGVHGAGLTH----SLFLR---------PGSVLMQVVPIGT 309
+ D + H + H LT SL L+ P VL P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRL 330
Query: 310 QWLSTVYFEKPARVLGLEYLEYK---------IKQEESSLVEKYGANDLVL--KN---PQ 355
++ + A +++ + E + K + L + + P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPT 389
Query: 356 AFAGANWSNMRVY---------LKTQNVKLDIDRFRIYLKDAYKKAKKLMDKEIKL 402
W ++ K V+ I + Y + K ++ E L
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 404 | |||
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 82.87 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 81.82 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 80.65 |
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=82.87 E-value=3 Score=39.91 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=55.2
Q ss_pred CCCEEEEEecCCCCCccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhh-hhhhhccCCCcEE
Q 044947 223 TKPKLVLVNRNARVGRTILNLREVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAG-LTHSLFLRPGSVL 301 (404)
Q Consensus 223 ~~prv~~i~R~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAg-Ltn~lF~~pgs~v 301 (404)
..-++++|.|.+..+| -+..+|...|..|.+.... +.++.+ .+.+|||+|+.-|+. +-..=|.+||++|
T Consensus 160 ~Gk~vvVvGrs~iVG~------plA~lL~~~gAtVtv~hs~-T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGR------PMALELLLGGCTVTVTHRF-TRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIV 229 (286)
T ss_dssp TTCEEEEECTTSTTHH------HHHHHHHHTTCEEEEECTT-CSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhHH------HHHHHHHHCCCeEEEEeCC-CcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEE
Confidence 3458999999875433 4566777889999987643 456654 478999999998876 6666678999999
Q ss_pred EEEe
Q 044947 302 MQVV 305 (404)
Q Consensus 302 IEI~ 305 (404)
|-+-
T Consensus 230 IDvg 233 (286)
T 4a5o_A 230 IDVG 233 (286)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 404 | |||
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 90.12 | |
| d2bona1 | 295 | Lipid kinase YegS {Escherichia coli [TaxId: 562]} | 87.38 |
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=90.12 E-value=0.55 Score=37.30 Aligned_cols=80 Identities=11% Similarity=0.184 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHhhCCeEEEechhhhhhhhc--cCCCcEEEEEeeCCcccccccchHhHH
Q 044947 244 REVKKAAEELGFDVTIFEPEESTSLADSFRFIHSCHAMVGVHGAGLTHSLF--LRPGSVLMQVVPIGTQWLSTVYFEKPA 321 (404)
Q Consensus 244 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlVGvHGAgLtn~lF--~~pgs~vIEI~P~g~~w~~~~~y~~lA 321 (404)
+++++.+++. |+++....+..++-+|-++.+.++|++|...+..++.-+| +|+.-.+|--+.-|+++.+- ..|
T Consensus 12 ~~~~~~l~~~-~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~ID~----~~a 86 (129)
T d1gdha2 12 EAAMARARES-YDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDL----DAC 86 (129)
T ss_dssp HHHHHHHHTT-SEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTBCH----HHH
T ss_pred HHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCccccH----HHH
Confidence 4677788764 6887655444689999999999999999888888999999 55567788777777654432 456
Q ss_pred hhcCCeE
Q 044947 322 RVLGLEY 328 (404)
Q Consensus 322 ~~~gl~Y 328 (404)
+..|+.-
T Consensus 87 ~~~gI~V 93 (129)
T d1gdha2 87 KARGIKV 93 (129)
T ss_dssp HHTTCEE
T ss_pred HhCCCEE
Confidence 6777763
|
| >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|