Citrus Sinensis ID: 044953

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSESADG
cHHHHHccccccccEEEcccccccccccccccEEEEEcccccEEEEcccccccccccccccccccEEEEEEEEEccHHHHcHHccccHHHHHHHHHHccccHHHHHcccccEEEEcEEEccccccHHHHHHHHHHHHccccccccccEEEEEEccccccccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccc
cHHHHHccccHHHHHHHHccHHHHHHHHHHcccHEEEccccEEEEEEccccccccHHHHHHccccEEEEEEEEEccHHHHcHHHHHHHHHHHHHHHHccEEEEEEEEEEcEEEEcccEEcccccHHHHHHHHHHHHcccccccccccccEEEEccccEccEEEEEEEccccccHHHHHHHHHHHHHHccEEEEEEEccccccccccccccccc
YLFLACLGIDKERLRFRQHLANEMAHYAANCWDaeiecshgwiecvgiadrstydlhahtkfsetREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKkehqrvfiplviepsfgiGRIIYCLyehsfytrpskagdeqlnvfrfpplvapikctvfplrdskdqIRVSVDEAASVIKAVTdgqttwedvwssyphhcsesadg
YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHtkfsetrevekLVIAPVKKElglafkgsqkNVVEALEKNMLLIskekkkehqrvfiplviepsfgIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAvtdgqttwedvwssyphhcsesadg
YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSESADG
*LFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYP*********
YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSESA*G
YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSESADG
YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSS***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSESADG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query213 2.2.26 [Sep-21-2011]
O23627729 Glycine--tRNA ligase 1, m yes no 0.788 0.230 0.685 2e-77
P38088690 Glycine--tRNA ligase 1, m yes no 0.859 0.265 0.405 3e-41
Q10179652 Putative glycine--tRNA li yes no 0.769 0.251 0.419 2e-39
Q04451680 Glycine--tRNA ligase OS=B N/A no 0.774 0.242 0.417 2e-38
Q10039742 Glycine--tRNA ligase OS=C yes no 0.765 0.219 0.454 3e-38
Q9CZD3729 Glycine--tRNA ligase OS=M yes no 0.798 0.233 0.388 7e-37
Q9FXG2463 Putative glycine--tRNA li no no 0.450 0.207 0.719 9e-37
Q5I0G4637 Glycine--tRNA ligase (Fra no no 0.798 0.266 0.388 1e-36
P41250739 Glycine--tRNA ligase OS=H yes no 0.798 0.230 0.384 1e-36
Q5RBL1739 Glycine--tRNA ligase OS=P yes no 0.798 0.230 0.384 2e-36
>sp|O23627|SYGM1_ARATH Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  288 bits (737), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/213 (68%), Positives = 156/213 (73%), Gaps = 45/213 (21%)

Query: 1   YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
           YLFL  LGIDKERLRFRQHLANEMAHYAA+CWDAEIE S+GWIECVGIADRS YDL AH+
Sbjct: 411 YLFLTRLGIDKERLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGIADRSAYDLRAHS 470

Query: 61  -----------KFSETREVEKLVIAPVKKELGLAFKGSQKNVVEAL-------------- 95
                      KF+E +EVEKLVI PVKKELGLAFKG+QKNVVE+L              
Sbjct: 471 DKSGTPLVAEEKFAEPKEVEKLVITPVKKELGLAFKGNQKNVVESLEAMNEEEAMEMKAT 530

Query: 96  --------------------EKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEH 135
                               +KNM+ ISKEKKKEHQRVF P VIEPSFGIGRIIYCLYEH
Sbjct: 531 LESKGEVEFYVCTLKKSVNIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEH 590

Query: 136 SFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL 168
            F TRPSKAGDEQLN+FRFPPLVAPIKCTVFPL
Sbjct: 591 CFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPL 623
Catalyzes the attachment of glycine to tRNA(Gly). Is also able produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4
>sp|P38088|SYG_YEAST Glycine--tRNA ligase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GRS1 PE=1 SV=3 Back     alignment and function description
>sp|Q10179|SYG_SCHPO Putative glycine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grs1 PE=3 SV=1 Back     alignment and function description
>sp|Q04451|SYG_BOMMO Glycine--tRNA ligase OS=Bombyx mori PE=1 SV=2 Back     alignment and function description
>sp|Q10039|SYG_CAEEL Glycine--tRNA ligase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9CZD3|SYG_MOUSE Glycine--tRNA ligase OS=Mus musculus GN=Gars PE=1 SV=1 Back     alignment and function description
>sp|Q9FXG2|SYGC_ARATH Putative glycine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At1g29870 PE=2 SV=2 Back     alignment and function description
>sp|Q5I0G4|SYG_RAT Glycine--tRNA ligase (Fragment) OS=Rattus norvegicus GN=Gars PE=1 SV=1 Back     alignment and function description
>sp|P41250|SYG_HUMAN Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3 Back     alignment and function description
>sp|Q5RBL1|SYG_PONAB Glycine--tRNA ligase OS=Pongo abelii GN=GARS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
449470277 729 PREDICTED: glycine--tRNA ligase 1, mitoc 0.995 0.290 0.556 1e-85
449526656 729 PREDICTED: LOW QUALITY PROTEIN: glycine- 0.995 0.290 0.553 9e-85
225456501 710 PREDICTED: glycyl-tRNA synthetase 1, mit 0.995 0.298 0.544 3e-82
297734516 687 unnamed protein product [Vitis vinifera] 0.995 0.308 0.544 3e-82
224075451 691 predicted protein [Populus trichocarpa] 0.995 0.306 0.537 4e-82
356527475 725 PREDICTED: glycyl-tRNA synthetase 1, mit 0.995 0.292 0.528 8e-81
297851412 730 glycyl-tRNA synthetase [Arabidopsis lyra 0.995 0.290 0.525 2e-80
224053571 690 predicted protein [Populus trichocarpa] 0.995 0.307 0.525 2e-79
21592545 690 glycyl tRNA synthetase, putative [Arabid 0.849 0.262 0.653 3e-76
313760928 688 glycyl-tRNA synthetase-like protein [Lir 0.985 0.305 0.509 6e-76
>gi|449470277|ref|XP_004152844.1| PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/318 (55%), Positives = 195/318 (61%), Gaps = 106/318 (33%)

Query: 1   YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
           YLFL  LGIDK+RLRFRQHLANEMAHYAA+CWDAEIECS+GWIECVGIADRS YDLHAHT
Sbjct: 411 YLFLTRLGIDKDRLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLHAHT 470

Query: 61  -----------KFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALE------------- 96
                      KF+E REVEKLVIAPVKKELGLAFKGSQKNVVEALE             
Sbjct: 471 EKSGVPLVAHEKFAEPREVEKLVIAPVKKELGLAFKGSQKNVVEALEAMKEKEALEMKAA 530

Query: 97  ---------------------KNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEH 135
                                K+M+ ISKEKKKEHQRVF P VIEPSFGIGRIIYCL+EH
Sbjct: 531 LESNGEVEFYVCTLGKNVSIKKSMVAISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEH 590

Query: 136 SFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSK----------------------- 172
           S+Y RPSKAGDEQLNVFRFPPLVAPIKCTVFPL  ++                       
Sbjct: 591 SYYMRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEQVAKVISKSLTFSGISHKID 650

Query: 173 -------------DQIRV----SVDEAAS---------------------VIKAVTDGQT 194
                        D++ V    +VD A+S                     V+K VTDG  
Sbjct: 651 ITGTSIGKRYARTDELGVPFAITVDSASSVTIRERDSKDQIRVSVEEAATVVKDVTDGLR 710

Query: 195 TWEDVWSSYPHHCSESAD 212
           TWEDVWS++PHH S SA+
Sbjct: 711 TWEDVWSTFPHHASASAE 728

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449526656|ref|XP_004170329.1| PREDICTED: LOW QUALITY PROTEIN: glycine--tRNA ligase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225456501|ref|XP_002280957.1| PREDICTED: glycyl-tRNA synthetase 1, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734516|emb|CBI15763.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224075451|ref|XP_002304639.1| predicted protein [Populus trichocarpa] gi|222842071|gb|EEE79618.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527475|ref|XP_003532335.1| PREDICTED: glycyl-tRNA synthetase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|297851412|ref|XP_002893587.1| glycyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] gi|297339429|gb|EFH69846.1| glycyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224053571|ref|XP_002297878.1| predicted protein [Populus trichocarpa] gi|222845136|gb|EEE82683.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|21592545|gb|AAM64494.1| glycyl tRNA synthetase, putative [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|313760928|gb|ADR79441.1| glycyl-tRNA synthetase-like protein [Liriodendron tulipifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
TAIR|locus:2019327729 AT1G29880 [Arabidopsis thalian 0.450 0.131 0.766 1.5e-71
RGD|1307856 637 Gars "glycyl-tRNA synthetase" 0.446 0.149 0.481 1.6e-42
UNIPROTKB|Q5I0G4 637 Gars "Glycine--tRNA ligase" [R 0.446 0.149 0.481 1.6e-42
UNIPROTKB|F1SII4 742 GARS "Uncharacterized protein" 0.446 0.128 0.471 2.3e-42
UNIPROTKB|F1NRK5 747 GARS "Uncharacterized protein" 0.474 0.135 0.436 2.9e-42
MGI|MGI:2449057 729 Gars "glycyl-tRNA synthetase" 0.446 0.130 0.481 6.9e-42
UNIPROTKB|A5D7A2 739 GARS "GARS protein" [Bos tauru 0.446 0.128 0.481 7.2e-42
UNIPROTKB|F1Q332 797 GARS "Uncharacterized protein" 0.446 0.119 0.471 8.4e-42
UNIPROTKB|P41250 739 GARS "Glycine--tRNA ligase" [H 0.446 0.128 0.481 1.2e-41
UNIPROTKB|Q5RBL1 739 GARS "Glycine--tRNA ligase" [P 0.446 0.128 0.481 1.2e-41
TAIR|locus:2019327 AT1G29880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 406 (148.0 bits), Expect = 1.5e-71, Sum P(2) = 1.5e-71
 Identities = 82/107 (76%), Positives = 89/107 (83%)

Query:     1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
             YLFL  LGIDKERLRFRQHLANEMAHYAA+CWDAEIE S+GWIECVGIADRS YDL AH+
Sbjct:   411 YLFLTRLGIDKERLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGIADRSAYDLRAHS 470

Query:    61 -----------KFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALE 96
                        KF+E +EVEKLVI PVKKELGLAFKG+QKNVVE+LE
Sbjct:   471 DKSGTPLVAEEKFAEPKEVEKLVITPVKKELGLAFKGNQKNVVESLE 517
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004820 "glycine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006426 "glycyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
RGD|1307856 Gars "glycyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5I0G4 Gars "Glycine--tRNA ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SII4 GARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRK5 GARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2449057 Gars "glycyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7A2 GARS "GARS protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q332 GARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P41250 GARS "Glycine--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBL1 GARS "Glycine--tRNA ligase" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_III0547
glycyl-tRNA synthetase (EC-6.1.1.14) (691 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.64.262.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1028 aa)
  ••• • 0.682
gw1.VII.873.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1117 aa)
  ••• • 0.666
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
   •  • 0.603
gw1.X.6174.1
annotation not avaliable (674 aa)
   •  • 0.592
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
      • 0.583
gw1.XIX.1762.1
histidine-tRNA ligase (475 aa)
   •  • 0.580
estExt_Genewise1_v1.C_LG_V3371
serine-tRNA ligase (EC-6.1.1.11) (447 aa)
   •  • 0.574
eugene3.00050325
alanyl-tRNA synthetase (EC-6.1.1.7) (973 aa)
   •  • 0.522
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
      • 0.467
grail3.0023017401
aspartate-tRNA ligase (EC-6.1.1.12) (530 aa)
•  •  • 0.457

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
PLN02734684 PLN02734, PLN02734, glycyl-tRNA synthetase 1e-109
COG0423558 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [ 3e-61
TIGR00389551 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, d 9e-58
PRK04173456 PRK04173, PRK04173, glycyl-tRNA synthetase; Provis 2e-43
cd00774254 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase ( 2e-23
PLN02734684 PLN02734, PLN02734, glycyl-tRNA synthetase 9e-16
cd00858121 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon b 5e-11
cd00774254 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase ( 1e-05
PRK14894 539 PRK14894, PRK14894, glycyl-tRNA synthetase; Provis 2e-05
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase Back     alignment and domain information 
 Score =  326 bits (838), Expect = e-109
 Identities = 152/237 (64%), Positives = 163/237 (68%), Gaps = 54/237 (22%)

Query: 1   YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
           YLFL  LGIDKERLRFRQHLANEMAHYAA+CWDAEIECS+GWIECVGIADRS YDL AH+
Sbjct: 369 YLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHS 428

Query: 61  -----------KFSETREVEKLVIAPVKKELGLAFKGSQKNVVEALE------------- 96
                      KF+E REVE LVI P KKELGLAFKG QK VVEALE             
Sbjct: 429 DKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAK 488

Query: 97  ---------------------KNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEH 135
                                KNM+ ISKEKKKEHQRVF P VIEPSFGIGRIIYCL+EH
Sbjct: 489 LESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEH 548

Query: 136 SFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKDQIRVSVDEAASVI-KAVTD 191
           SFYTRP   GDEQLNVFRFPPLVAPIKCTVFPL   ++Q    ++  A VI K +T 
Sbjct: 549 SFYTRP---GDEQLNVFRFPPLVAPIKCTVFPL--VQNQ---QLNAVAKVISKELTA 597

Length = 684
>gnl|CDD|223500 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>gnl|CDD|235240 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238397 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238435 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|238397 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>gnl|CDD|237851 PRK14894, PRK14894, glycyl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 213
PLN02734684 glycyl-tRNA synthetase 100.0
KOG2298599 consensus Glycyl-tRNA synthetase and related class 100.0
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 100.0
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 100.0
PRK14894 539 glycyl-tRNA synthetase; Provisional 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 99.95
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.83
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 99.22
PRK03991613 threonyl-tRNA synthetase; Validated 99.16
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 99.15
PRK08661 477 prolyl-tRNA synthetase; Provisional 98.96
TIGR00414418 serS seryl-tRNA synthetase. This model represents 98.93
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 98.37
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 98.3
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 98.22
PRK05431425 seryl-tRNA synthetase; Provisional 98.2
PRK12444639 threonyl-tRNA synthetase; Reviewed 98.17
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 98.14
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 98.12
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 98.09
PLN02837614 threonine-tRNA ligase 98.09
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 97.79
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 97.56
PRK09194565 prolyl-tRNA synthetase; Provisional 97.38
PLN02908686 threonyl-tRNA synthetase 96.92
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 96.88
PRK12325439 prolyl-tRNA synthetase; Provisional 96.57
cd00862 202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 96.09
PLN02678448 seryl-tRNA synthetase 96.05
PLN02320502 seryl-tRNA synthetase 93.18
KOG4163551 consensus Prolyl-tRNA synthetase [Translation, rib 90.56
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 89.65
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 89.4
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 88.98
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 82.22
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 80.3
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=3.7e-73  Score=553.40  Aligned_cols=209  Identities=82%  Similarity=1.311  Sum_probs=200.8

Q ss_pred             ChhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccC-----------cccCCceEEE
Q 044953            1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAH-----------TKFSETREVE   69 (213)
Q Consensus         1 ~~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H-----------~~~~~p~~~~   69 (213)
                      |+||.+|||++++||||||+++||||||+||||+||+|||||+|||||||||||||++|           .++++|++++
T Consensus       369 ~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~  448 (684)
T PLN02734        369 YLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVE  448 (684)
T ss_pred             HHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCCCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceee
Confidence            57999999999999999999999999999999999999999999999999999999999           5677899999


Q ss_pred             EEEEecchhhhhhhhcccHHHHHHHHH----------------------------------hcccccccccccccceeee
Q 044953           70 KLVIAPVKKELGLAFKGSQKNVVEALE----------------------------------KNMLLISKEKKKEHQRVFI  115 (213)
Q Consensus        70 ~~~~~~~~~~~g~~fk~~~~~~~~~l~----------------------------------~~~~~~~~~~~~~~~e~~i  115 (213)
                      ++.+.+||+.+|++||+|++.++++|+                                  ++|++|+..++++++++||
T Consensus       449 ~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i  528 (684)
T PLN02734        449 VLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFT  528 (684)
T ss_pred             eEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceec
Confidence            999999999999999999999999877                                  5788999999999999999


Q ss_pred             eeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee---------------------------
Q 044953          116 PLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL---------------------------  168 (213)
Q Consensus       116 PhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL---------------------------  168 (213)
                      ||||||||||||||||+|||+|++|   ++|++|++|+|||.|||+||+|+||                           
T Consensus       529 P~VIEPS~GIgRIl~AilE~s~~~~---~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelD  605 (684)
T PLN02734        529 PSVIEPSFGIGRIIYCLFEHSFYTR---PGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKID  605 (684)
T ss_pred             CceEecCccHHHHHHHHHHHHhccc---cCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEE
Confidence            9999999999999999999999998   5678899999999999999999999                           


Q ss_pred             ----------------------------------cCCcccccccHHHHHHHHHHhhcCCccHHHHhhhCCCeecccCC
Q 044953          169 ----------------------------------RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSESAD  212 (213)
Q Consensus       169 ----------------------------------Rds~~QvR~~i~~l~~~i~~l~~~~~~w~~~~~~~p~~~~~~~~  212 (213)
                                                        |||++|+|++++++.+.|.++++|..+|+++.++||.|++|+++
T Consensus       606 d~~~SIGKRyrrADeiGIPf~ItIG~dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~~~~~w~~~~~~~~~~~~~~~~  683 (684)
T PLN02734        606 ITGTSIGKRYARTDELGVPFAVTVDSDGSVTIRERDSKDQVRVPVEEVASVVKDLTDGRMTWEDVTAKYPAHSSAADD  683 (684)
T ss_pred             CCCCCHhHHHHHHHHcCCCEEEEECCCCeEEEEECCCCceEEeeHHHHHHHHHHHHcCCCCHHHHHhhCccccccccC
Confidence                                              89999999999999999999999999999999999999998764

>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
2q5h_A691 Crystal Structure Of Apo-Wildtype Glycyl-Trna Synth 1e-37
2pme_A693 The Apo Crystal Structure Of The Glycyl-Trna Synthe 1e-37
2q5i_A691 Crystal Structure Of Apo S581l Glycyl-Trna Syntheta 1e-37
2pmf_A693 The Crystal Structure Of A Human Glycyl-trna Synthe 1e-36
1ati_A505 Crystal Structure Of Glycyl-Trna Synthetase From Th 1e-13
1ggm_A442 Glycyl-Trna Synthetase From Thermus Thermophilus Co 2e-13
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase Length = 691 Back     alignment and structure 
Iteration: 1

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 115/216 (53%), Gaps = 46/216 (21%)
Query: 1   YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
           YL+L  +GI  ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL  H 
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 61  K-----------FSETREVEKLVIAPVKKELGLAFKGSQKNVVE---------------- 93
           +             E + V  +   P K  +G A+K   K V+E                
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 94  ----------------ALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
                            L K+M+ + + +K  +    +P VIEPSFG+GRI+Y ++EH+F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
           + R    GDEQ   F FP +VAP KC+V PL  +++
Sbjct: 540 HVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQE 572
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase Length = 693 Back     alignment and structure
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase Mutant Length = 691 Back     alignment and structure
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase Mutant Length = 693 Back     alignment and structure
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus Thermophilus Length = 505 Back     alignment and structure
>pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Glycyl-Adenylate Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 6e-46
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 2e-07
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 2e-44
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 2e-13
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 4e-13
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 Back     alignment and structure
 Score =  160 bits (405), Expect = 6e-46
 Identities = 83/216 (38%), Positives = 116/216 (53%), Gaps = 46/216 (21%)

Query: 1   YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHT 60
           YL+L  +GI  ++LRFRQH+ NEMAHYA +CWDAE + S+GWIE VG ADRS YDL  H 
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419

Query: 61  KFS-----------ETREVEKLVIAPVKKELGLAFKGSQKNVVEAL-------------- 95
           + +           E + V  +   P K  +G A+K   K V+E L              
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479

Query: 96  ------------------EKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSF 137
                              K+M+ + + +K  +    +P VIEPSFG+GRI+Y ++EH+F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539

Query: 138 YTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLRDSKD 173
           + R    GDEQ   F FP +VAP KC+V PL  +++
Sbjct: 540 HVRE---GDEQRTFFSFPAVVAPFKCSVLPLSQNQE 572
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Length = 505 Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Length = 459 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 99.98
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 99.96
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 99.92
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 99.02
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 99.02
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 98.99
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 98.92
3err_A536 Fusion protein of microtubule binding domain from 98.91
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 98.88
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 98.87
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 98.85
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 98.83
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.82
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 98.8
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.75
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 98.67
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.65
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 98.58
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 98.37
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 98.27
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 97.81
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 97.66
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 97.25
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 97.04
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 96.31
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 95.65
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 94.79
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 93.07
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 92.35
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 89.58
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
Probab=100.00  E-value=4.9e-43  Score=342.35  Aligned_cols=208  Identities=46%  Similarity=0.829  Sum_probs=148.9

Q ss_pred             ChhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccC-----------cccCCceEEE
Q 044953            1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAH-----------TKFSETREVE   69 (213)
Q Consensus         1 ~~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H-----------~~~~~p~~~~   69 (213)
                      +.||.++||+++++|||+|+++||||||.+|||+|+.+++||+||+|||+|++|||++|           .++++|++++
T Consensus       360 ~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~  439 (693)
T 2zt5_A          360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVN  439 (693)
T ss_dssp             HHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC--------
T ss_pred             HHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCccccee
Confidence            36899999999999999999999999999999999999999999999999999999999           4577899999


Q ss_pred             EEEEecchhhhhhhhcccHHHHHHHHHhcc--------------------------------cccccccccccceeeeee
Q 044953           70 KLVIAPVKKELGLAFKGSQKNVVEALEKNM--------------------------------LLISKEKKKEHQRVFIPL  117 (213)
Q Consensus        70 ~~~~~~~~~~~g~~fk~~~~~~~~~l~~~~--------------------------------~~~~~~~~~~~~e~~iPh  117 (213)
                      .+.+.+|++.+|+.|+++++.+.++|....                                +.++.+...+.+.+|+|+
T Consensus       440 ~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~  519 (693)
T 2zt5_A          440 VVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPN  519 (693)
T ss_dssp             ------------------------------------------------------------------------CCEEECCE
T ss_pred             eeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEECCEEEEecccccceeeEEeccCCcEecCc
Confidence            999999999999999999999988876211                                111112234578999999


Q ss_pred             eeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCCCCCCceEEEeee-----------------------------
Q 044953          118 VIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPL-----------------------------  168 (213)
Q Consensus       118 VIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p~lAPiKvaVlPL-----------------------------  168 (213)
                      ||++|||+||+++++++++|.++   +++++|+.+++|+.+||++|+|+|+                             
T Consensus       520 Vi~~s~GigRli~aLie~~~~~~---~~~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~  596 (693)
T 2zt5_A          520 VIEPSFGLGRIMYTVFEHTFHVR---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS  596 (693)
T ss_dssp             EEEEEEEHHHHHHHHHHHHEEEC---SSTTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC
T ss_pred             ceeCeehHHHHHHHHHHHhcccc---ccccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence            99999999999999999999877   4556799999999999999999998                             


Q ss_pred             --------------------------------------cCCcccccccHHHHHHHHHHhhcCCccHHHHhhhCCCeeccc
Q 044953          169 --------------------------------------RDSKDQIRVSVDEAASVIKAVTDGQTTWEDVWSSYPHHCSES  210 (213)
Q Consensus       169 --------------------------------------Rds~~QvR~~i~~l~~~i~~l~~~~~~w~~~~~~~p~~~~~~  210 (213)
                                                            |||++|.+++++++.+.|.+++++..+|+++.++||.|++|+
T Consensus       597 ~~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~eq~~v~l~el~~~l~~~l~~~~~w~~~~~~~~~~~~~~  676 (693)
T 2zt5_A          597 SGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYPLFEGQE  676 (693)
T ss_dssp             CSCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCCEEEEETTTHHHHHHHHHTTSSCHHHHHHHSCBCC---
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCceEEEeHHHHHHHHHHHHhCcccHHHHHHhccchhccc
Confidence                                                  799999999999999999999999999999999999999986


Q ss_pred             C
Q 044953          211 A  211 (213)
Q Consensus       211 ~  211 (213)
                      +
T Consensus       677 ~  677 (693)
T 2zt5_A          677 T  677 (693)
T ss_dssp             -
T ss_pred             c
Confidence            5
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 213
d1atia2394 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 5e-33
d1b76a2331 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 3e-24
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 7e-15
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 394 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  120 bits (301), Expect = 5e-33
 Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 7   LGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETR 66
           +G+ +E L   Q      AHYA    D      HG +E  GIA R+ +DL +HTK  E  
Sbjct: 267 MGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEAL 326

Query: 67  EVEKLVIAPVKKELGLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIG 126
            +   V+        LA+                     +  E  + F+P VIEPS G+ 
Sbjct: 327 GITARVLRNEHSTQRLAY---------------------RDPETGKWFVPYVIEPSAGVD 365

Query: 127 RIIYCLYEHSFYTRPSKAGDEQLNVFRFPP 156
           R +  L   + +TR      E+  V +  P
Sbjct: 366 RGVLALLAEA-FTREELPNGEERIVLKLKP 394
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 100.0
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.97
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.92
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 98.77
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 97.76
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 97.57
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 97.37
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 97.15
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 96.85
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 96.56
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 96.34
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-50  Score=371.36  Aligned_cols=134  Identities=28%  Similarity=0.411  Sum_probs=110.6

Q ss_pred             ChhHHHhCCCCCCceeeccCCccccccccceeeEEEecCCceEEEEeeecCcchhhccCcccCCceEEEEEEEecchhhh
Q 044953            1 YLFLACLGIDKERLRFRQHLANEMAHYAANCWDAEIECSHGWIECVGIADRSTYDLHAHTKFSETREVEKLVIAPVKKEL   80 (213)
Q Consensus         1 ~~Fl~~iGi~~~~lRfrqh~~~EmAHYA~dcwD~E~~~~~GW~E~~GiAdR~~yDL~~H~~~~~p~~~~~~~~~~~~~~~   80 (213)
                      ++||.++||++++||||||+++||||||+||||+||+|||||+||+||||||||||++|++.++-.           ...
T Consensus       261 ~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp~Gw~El~GiA~RtdyDL~~H~k~~~~~-----------~~~  329 (394)
T d1atia2         261 LKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEAL-----------GIT  329 (394)
T ss_dssp             HHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCSSTTTT-----------TCC
T ss_pred             HHHHHHhcCCccceeEEeecchhhhhcccceEEEEEecCCCcEechhhhccchhhHHHHhhhcccc-----------chh
Confidence            379999999999999999999999999999999999999999999999999999999998866510           011


Q ss_pred             hhhhcccHHHHHHHHHhcccccccccccccceeeeeeeeeccCCchHHHHHHHHhhhcccCCCCCCcceeEEecCC
Q 044953           81 GLAFKGSQKNVVEALEKNMLLISKEKKKEHQRVFIPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPP  156 (213)
Q Consensus        81 g~~fk~~~~~~~~~l~~~~~~~~~~~~~~~~e~~iPhVIEPSfGldRilyalLe~sf~~r~~~~~~~~R~vL~l~p  156 (213)
                      .+.++....      .++|..+|.    .++++||||||||||||||+|||+|+|||++++ .+++++|+||+|||
T Consensus       330 ~~~~~~~~s------~~~l~~~d~----~~~~~~iPhVIEPS~GldR~~la~L~~ay~eee-~~~~e~R~vLkl~P  394 (394)
T d1atia2         330 ARVLRNEHS------TQRLAYRDP----ETGKWFVPYVIEPSAGVDRGVLALLAEAFTREE-LPNGEERIVLKLKP  394 (394)
T ss_dssp             SCCCCCSCC------CSCCCEECS----SSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEE-CTTSCEEEEECCCG
T ss_pred             hhhhcCCCc------cceeEEEcc----CCCcEEeeeEEEcCCCccHHHHHHHHHHhhhhh-cCCCCceEEEecCC
Confidence            111111100      056766664    478999999999999999999999999999873 23568899999998
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure