Citrus Sinensis ID: 044962

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720------
MEYKDGFVSKVQRKLVRSLSESADPLTVSALQISTSPKSPRSPKSYSKHGSSRASPSKGSPRGSPRKYDRRQHSPRDGRPKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKLDNARENGSCQ
cccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHcccccccHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccc
ccccccEccccccHHHHHccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHcccccccEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHcccccccccccc
MEYKDGFVSKVQRKLVRSLsesadpltvsalqistspksprspksyskhgssraspskgsprgsprkydrrqhsprdgrpkkggcggkgtwgglldtednyfidpndpnydsteeyerpsakksagdldefKKKATIIVEEYFATDDVLSAANELRelrkpnynyYFVKRLISIAMDRHDKEKEMAAVLLSALyadaidppqvYRGFIKLVESaddlivdipDTVDVLALFIARAvvddilppaFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIErrwggsknktvEDVKVRINDLLIEYVVsgdkkeafrctndlkvpffHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGriidtvddlsldipnARGILHSLISKAASEGWLCASslkslssepekrlledTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSslflpaddvVNGFVMLIEsaddtaldnpvVVEDLAMFLARAVVDevlapqhleeigsqflgaesIGSKVLQMAKSLLNARLSGErilrcwgggggssrpgwavEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAktegwldssfwfskldnarengscq
meykdgfvskVQRKLVRslsesadpltvsalqistspksprspksyskhgssraspskgsprgsprkydrrqhsprdgrpkkggcggkgTWGGLLDTEDNYFIDPNDPnydsteeyerpsakksagdldefKKKATIIVEEYFATDDVLSAANElrelrkpnynyYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGyleaplhaeiierrwggsknktvedvKVRINDLLIEYVVSGDKKEAFRCTndlkvpffHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSlkslssepekrlLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLEsekksslnevnaiFVKRLITLAMDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCwgggggssrpgwavEDVKDKIGRLLeeyesggdvreARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKaktegwldssfwfskLDNARENGSCQ
MEYKDGFVSKVQRKLVRSLSESADPLTVSALQIstspksprspksyskHgssraspskgsprgsprkYDRRQHSPRDgrpkkggcggkgtwggLLDTEDNYFIDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCAsslkslssepekrlleDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWgggggssRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKLDNARENGSCQ
***************************************************************************************KGTWGGLLDTEDNYFI****************************KKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCAS******************TKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRC****************VKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKL**********
************************************************************************************************************************************KKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAM*******EMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSG******************AVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSF***************
MEYKDGFVSKVQRKLVRSLSESADPLTVSAL****************************************************GCGGKGTWGGLLDTEDNYFIDPNDPNY*****************LDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKLDN********
***************************************************************************************************NYFIDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSK***********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEYKDGFVSKVQRKLVRSLSESADPLTVSALQISTSPKSPRSPKSYSKHGSSRASPSKGSPRGSPRKYDRRQHSPRDGRPKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKLDNARENGSCQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query726 2.2.26 [Sep-21-2011]
Q98TX3467 Programmed cell death pro yes no 0.374 0.582 0.348 3e-32
Q61823469 Programmed cell death pro yes no 0.376 0.582 0.325 2e-29
Q53EL6469 Programmed cell death pro yes no 0.376 0.582 0.321 3e-29
Q9JID1469 Programmed cell death pro yes no 0.376 0.582 0.325 4e-29
Q5R8S3469 Programmed cell death pro yes no 0.376 0.582 0.318 1e-28
Q6NZJ61600 Eukaryotic translation in no no 0.169 0.076 0.314 4e-08
Q5R7J9907 Eukaryotic translation in no no 0.172 0.137 0.294 5e-08
P78344907 Eukaryotic translation in no no 0.172 0.137 0.294 5e-08
Q95L46907 Eukaryotic translation in no no 0.172 0.137 0.294 5e-08
P79398907 Eukaryotic translation in no no 0.172 0.137 0.286 1e-07
>sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1 Back     alignment and function desciption
 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 152/290 (52%), Gaps = 18/290 (6%)

Query: 426 DTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAMDRKNREK 485
           D + F+     IIQEYF  GD  EVS  L   K  +L E+        ++LA++ K   +
Sbjct: 158 DERAFEKTLTPIIQEYFEHGDTNEVSEML---KDLNLGEMKYSVPVLAVSLALEGKASHR 214

Query: 486 EMASVLLSSL---FLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAP 542
           EM S L+S L    +   DV   F  L++   D  LD+P   + +  F+ARAV D +L+ 
Sbjct: 215 EMTSKLISDLCGTVVSKTDVEKSFDKLLKDLPDLVLDSPRAPQLVGQFIARAVGDGILSS 274

Query: 543 QHLEEIGSQFLGAESIGSKV-LQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKD 601
            +++         +SI ++  L  A  LL+    G+RI   WG GGG      +V+ +  
Sbjct: 275 TYIDGYKGT---VDSIQARAALDRATVLLSVTKGGKRIDNVWGSGGGQQ----SVKHLVK 327

Query: 602 KIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----LWGLLKE 657
           +I  LL+EY   GD+ EA RC++EL +P FHHE+V +A+V V+E   E+    +  LLK 
Sbjct: 328 EIDMLLKEYLLSGDLLEAERCLQELEVPHFHHELVYEAIVMVLESTGEKTFKMMLDLLKS 387

Query: 658 CSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWL 707
            S S  ITM+QM +G+ RV   + D+ LDVP +      +VE+    G +
Sbjct: 388 LSRSSVITMDQMKRGYERVYCEIPDINLDVPHSYSVLERFVEECFQAGII 437
Inhibits translation initiation and cap-dependent translation. May excert its function by hindering the interaction between EIF4A and EIF4G. Inhibits the helicase activity of EIF4A. Binds RNA (By similarity). Does not seem to be involved in apoptosis.
Gallus gallus (taxid: 9031)
>sp|Q61823|PDCD4_MOUSE Programmed cell death protein 4 OS=Mus musculus GN=Pdcd4 PE=1 SV=1 Back     alignment and function description
>sp|Q53EL6|PDCD4_HUMAN Programmed cell death protein 4 OS=Homo sapiens GN=PDCD4 PE=1 SV=2 Back     alignment and function description
>sp|Q9JID1|PDCD4_RAT Programmed cell death protein 4 OS=Rattus norvegicus GN=Pdcd4 PE=1 SV=2 Back     alignment and function description
>sp|Q5R8S3|PDCD4_PONAB Programmed cell death protein 4 OS=Pongo abelii GN=PDCD4 PE=2 SV=1 Back     alignment and function description
>sp|Q6NZJ6|IF4G1_MOUSE Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2 Back     alignment and function description
>sp|P78344|IF4G2_HUMAN Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1 Back     alignment and function description
>sp|Q95L46|IF4G2_BOVIN Eukaryotic translation initiation factor 4 gamma 2 OS=Bos taurus GN=EIF4G2 PE=2 SV=2 Back     alignment and function description
>sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query726
224085270724 predicted protein [Populus trichocarpa] 0.990 0.993 0.755 0.0
357497477710 Programmed cell death protein [Medicago 0.976 0.998 0.742 0.0
225463115725 PREDICTED: uncharacterized protein LOC10 0.990 0.991 0.768 0.0
356502325 908 PREDICTED: uncharacterized protein LOC10 0.960 0.767 0.739 0.0
255572339704 conserved hypothetical protein [Ricinus 0.969 1.0 0.730 0.0
356561385704 PREDICTED: uncharacterized protein LOC10 0.968 0.998 0.720 0.0
147781416 1168 hypothetical protein VITISV_019778 [Viti 0.954 0.593 0.761 0.0
297845294692 MA3 domain-containing protein [Arabidops 0.922 0.968 0.631 0.0
297739354661 unnamed protein product [Vitis vinifera] 0.829 0.910 0.699 0.0
15219942693 MA3 domain-containing protein [Arabidops 0.924 0.968 0.628 0.0
>gi|224085270|ref|XP_002307530.1| predicted protein [Populus trichocarpa] gi|222856979|gb|EEE94526.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/727 (75%), Positives = 611/727 (84%), Gaps = 8/727 (1%)

Query: 1   MEYKDGFVSKVQRKLVRSLSESADPLTVSALQIST---SPKSPRSPKSYSKHGSSRASPS 57
           MEY DGFVSK  R+L RS SESADPL+VS LQIS    S  SP SP+S ++ GSSR SPS
Sbjct: 1   MEYSDGFVSKEHRELARSASESADPLSVSLLQISIHTKSANSPNSPRSPNRTGSSRGSPS 60

Query: 58  KGSPRGSPRKYDRRQHSPRDGRPKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDSTEEYE 117
           KG P     K +R  HSP+DGRPKKGG GGKGTWGGLLD +D++ +DP DPN+DS+EE +
Sbjct: 61  KGGPG----KCERHSHSPKDGRPKKGGSGGKGTWGGLLDVDDSHSLDPKDPNFDSSEECD 116

Query: 118 RPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMD 177
             + +KS  D  EFKK  T+IVEEYFATDD++S ANELREL    Y+YYFVK+L+S+AMD
Sbjct: 117 HTTVRKSTTDFLEFKKNVTVIVEEYFATDDIVSTANELRELEMSGYHYYFVKKLVSMAMD 176

Query: 178 RHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVV 237
           R DKEKEMAAVLLSALYAD IDP QVYRGF KLVESADDLIVDIP+TVDVLALFIARAVV
Sbjct: 177 RDDKEKEMAAVLLSALYADIIDPQQVYRGFCKLVESADDLIVDIPETVDVLALFIARAVV 236

Query: 238 DDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKV 297
           DD+LPPAFLKKQMA+LP++SKG+ VLKRAEKGYL AP HAEIIERRWGG   KTVEDVK 
Sbjct: 237 DDMLPPAFLKKQMASLPEDSKGVAVLKRAEKGYLSAPHHAEIIERRWGGGMKKTVEDVKA 296

Query: 298 RINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEAS 357
           +I++LL EY VSGD+KEA RC  DLKVPFFHHEIVKR++ MAMER+QAEGRLL LLKEAS
Sbjct: 297 KIDNLLQEYAVSGDRKEACRCIKDLKVPFFHHEIVKRSLIMAMERKQAEGRLLDLLKEAS 356

Query: 358 EEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEP 417
           EEGLIN+SQ +KGFGR+ID+VDDLSLDIPNAR IL SLISKAASEGWLCASSLKSL   P
Sbjct: 357 EEGLINSSQTSKGFGRMIDSVDDLSLDIPNARRILQSLISKAASEGWLCASSLKSLGPTP 416

Query: 418 EKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLA 477
            K  L+D   K+FK+KAQSIIQEYFLSGDI EV  CL SE  +   E+NAIF+KRLITLA
Sbjct: 417 VKGSLQDDSAKIFKLKAQSIIQEYFLSGDISEVGSCLGSENNAYSAELNAIFIKRLITLA 476

Query: 478 MDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVD 537
           MDRKNREKEMASVLLSSL  P+DDVVNGF+MLIESADDTALDNPVVVEDLAMFLARAVVD
Sbjct: 477 MDRKNREKEMASVLLSSLCFPSDDVVNGFIMLIESADDTALDNPVVVEDLAMFLARAVVD 536

Query: 538 EVLAPQHLEEIGSQFLGAESIGSKVLQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVE 597
           EVLAP+ LEEIG+QF G ESIG KVLQMAKS L ARLSGERILRCWGGG   S PGW +E
Sbjct: 537 EVLAPRQLEEIGTQFSGPESIGRKVLQMAKSSLKARLSGERILRCWGGGRTGS-PGWDIE 595

Query: 598 DVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNERLWGLLKE 657
           DVKDK+GRLLEE+ESGGD+ EA RCIKEL MPFFHHE+VKKALV++IEKKNERLWGLL +
Sbjct: 596 DVKDKVGRLLEEFESGGDIGEACRCIKELSMPFFHHEVVKKALVAIIEKKNERLWGLLDQ 655

Query: 658 CSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKLD 717
           C  SG IT  QMMKGFGRV ESLDDLALDVPDA+KQF HYVE+A   GWLDSSF  SK  
Sbjct: 656 CFSSGLITTCQMMKGFGRVAESLDDLALDVPDAEKQFKHYVERATLAGWLDSSFCLSKSG 715

Query: 718 NARENGS 724
             +ENG+
Sbjct: 716 PTKENGA 722

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357497477|ref|XP_003619027.1| Programmed cell death protein [Medicago truncatula] gi|355494042|gb|AES75245.1| Programmed cell death protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225463115|ref|XP_002264439.1| PREDICTED: uncharacterized protein LOC100249422 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502325|ref|XP_003519970.1| PREDICTED: uncharacterized protein LOC100798465 [Glycine max] Back     alignment and taxonomy information
>gi|255572339|ref|XP_002527108.1| conserved hypothetical protein [Ricinus communis] gi|223533531|gb|EEF35271.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356561385|ref|XP_003548962.1| PREDICTED: uncharacterized protein LOC100806217 [Glycine max] Back     alignment and taxonomy information
>gi|147781416|emb|CAN60675.1| hypothetical protein VITISV_019778 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297845294|ref|XP_002890528.1| MA3 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336370|gb|EFH66787.1| MA3 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297739354|emb|CBI29344.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15219942|ref|NP_173687.1| MA3 domain-containing protein [Arabidopsis thaliana] gi|3287683|gb|AAC25511.1| Similar to apoptosis protein MA-3 gb|D50465 from Mus musculus [Arabidopsis thaliana] gi|14334598|gb|AAK59477.1| putative topoisomerase [Arabidopsis thaliana] gi|22136820|gb|AAM91754.1| putative topoisomerase [Arabidopsis thaliana] gi|332192157|gb|AEE30278.1| MA3 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query726
TAIR|locus:2199695693 AT1G22730 "AT1G22730" [Arabido 0.853 0.894 0.653 1.4e-208
TAIR|locus:2126788702 ECIP1 "AT4G24800" [Arabidopsis 0.880 0.910 0.538 1.3e-169
TAIR|locus:2162007702 AT5G63190 "AT5G63190" [Arabido 0.874 0.904 0.515 3e-165
TAIR|locus:2101155633 AT3G48390 "AT3G48390" [Arabido 0.819 0.939 0.517 2.4e-156
FB|FBgn0030520509 Pdcd4 "Programmed cell death 4 0.411 0.587 0.321 5.9e-34
ZFIN|ZDB-GENE-040426-1920467 pdcd4a "programmed cell death 0.407 0.633 0.315 9.5e-33
ZFIN|ZDB-GENE-030131-9847470 pdcd4b "programmed cell death 0.410 0.634 0.336 2.6e-32
UNIPROTKB|Q98TX3467 PDCD4 "Programmed cell death p 0.409 0.635 0.300 3.4e-32
UNIPROTKB|F1NIY3467 PDCD4 "Programmed cell death p 0.409 0.635 0.300 7.1e-32
RGD|620816469 Pdcd4 "programmed cell death 4 0.409 0.633 0.297 2.6e-27
TAIR|locus:2199695 AT1G22730 "AT1G22730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2017 (715.1 bits), Expect = 1.4e-208, P = 1.4e-208
 Identities = 410/627 (65%), Positives = 486/627 (77%)

Query:   104 DPNDPNYDSTEE--YERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKP 161
             D  DP +D+ E   +  P++   A DL E+KKKAT+IVEEYF T+DV+S  NEL+EL   
Sbjct:    63 DLTDPIFDTIEGNGHSDPTSCFDA-DLSEYKKKATVIVEEYFGTNDVVSVVNELKELGMA 121

Query:   162 NYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDI 221
              Y YYFVK+L+S+AMDRHDKEKEMAA LLS LYAD IDPP+VYRGF KLV SADDL VDI
Sbjct:   122 EYRYYFVKKLVSMAMDRHDKEKEMAAFLLSTLYADVIDPPEVYRGFNKLVASADDLSVDI 181

Query:   222 PDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIE 281
             PD VDVLA+F+ARA+VDDILPPAFLKKQM  LP  SKG+EVL++AEK YL  PLHAE++E
Sbjct:   182 PDAVDVLAVFVARAIVDDILPPAFLKKQMKLLPDNSKGVEVLRKAEKSYLATPLHAEVVE 241

Query:   282 RRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIVKRAVTMAME 341
             +RWGG+ N T EDVK RINDLL EYV+SGDKKEAFRC   LKVPFFHHEIVKRA+ MAME
Sbjct:   242 KRWGGTDNWTAEDVKARINDLLKEYVMSGDKKEAFRCIKGLKVPFFHHEIVKRALIMAME 301

Query:   342 RRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISKAAS 401
             RR+A+ RLL LLKE  E GLIN++Q+TKGF RIID+++DLSLDIP+AR IL S ISKAAS
Sbjct:   302 RRKAQVRLLDLLKETIEVGLINSTQVTKGFSRIIDSIEDLSLDIPDARRILQSFISKAAS 361

Query:   402 EGWLCAXXXXXXXXXXXXXXXXDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSS 461
             EGWLCA                ++   +FK KA+SII+EYFLSGD  EV  CL++E  +S
Sbjct:   362 EGWLCASSLKSLSADAGEKLLENSSANVFKDKAKSIIREYFLSGDTSEVVHCLDTELNAS 421

Query:   462 LNEVNAIFVKRLITLAMDRKNREKEMASVLLSSLFLPADDVVNGFVMLIESADDTALDNP 521
              +++ AIFVK LITLAMDRK REKEMA VL+S+L  P  DV + F MLIESADDTALDNP
Sbjct:   422 SSQLRAIFVKYLITLAMDRKKREKEMACVLVSTLGFPPKDVRSAFSMLIESADDTALDNP 481

Query:   522 VVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGA-ESIGSKVLQMAKSLLNARLSGERIL 580
             VVVEDLAMFLARAVVDEVLAP+ LEE+ +Q   A  S+G KV+QMAK+LL ARLSGERIL
Sbjct:   482 VVVEDLAMFLARAVVDEVLAPRDLEEVLNQTPEAGSSVGEKVIQMAKTLLKARLSGERIL 541

Query:   581 RCWXXXXXXXR-PGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKA 639
             RCW         PG  V++VK+KI  LLEEY SGGD+REA RC+KELGMPFFHHE+VKK+
Sbjct:   542 RCWGGGGIETNSPGSTVKEVKEKIQILLEEYVSGGDLREASRCVKELGMPFFHHEVVKKS 601

Query:   640 LVSVIEKKN--ERLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHY 697
             +V +IE+K   ERLW LLK C DSG +T+ QM KGF RV+ESL+DL+LDVPDA K+F   
Sbjct:   602 VVRIIEEKENEERLWKLLKVCFDSGLVTIYQMTKGFKRVDESLEDLSLDVPDAAKKFSSC 661

Query:   698 VEKAKTEGWLDSSFWFSKLDNARENGS 724
             VE+ K EG+LD SF      + ++NGS
Sbjct:   662 VERGKLEGFLDESFASEDSQSKKQNGS 688
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2126788 ECIP1 "AT4G24800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162007 AT5G63190 "AT5G63190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101155 AT3G48390 "AT3G48390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0030520 Pdcd4 "Programmed cell death 4 ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1920 pdcd4a "programmed cell death 4a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9847 pdcd4b "programmed cell death 4b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q98TX3 PDCD4 "Programmed cell death protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIY3 PDCD4 "Programmed cell death protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|620816 Pdcd4 "programmed cell death 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00005421001
SubName- Full=Chromosome undetermined scaffold_151, whole genome shotgun sequence; (694 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query726
pfam02847113 pfam02847, MA3, MA3 domain 1e-32
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 4e-32
pfam02847113 pfam02847, MA3, MA3 domain 1e-30
pfam02847113 pfam02847, MA3, MA3 domain 4e-30
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 2e-26
pfam02847113 pfam02847, MA3, MA3 domain 3e-26
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 3e-25
smart00544113 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and 8e-24
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information 
 Score =  121 bits (307), Expect = 1e-32
 Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 131 FKKKATIIVEEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLL 190
            KKK  +I+EEY ++ D   AA  L EL  P  ++  VK L+  A++     +EM  VLL
Sbjct: 1   LKKKIFLILEEYLSSGDYDEAARCLLELGLPFQHHEVVKVLLVCALEEKKTYREMYGVLL 60

Query: 191 SALY-ADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILP 242
           S L     I   Q  +GF +L+ES +DL +DIPD    LA F+AR + D ILP
Sbjct: 61  SRLCQFGLISTKQFEKGFSRLLESLEDLELDIPDAWRNLAEFVARLISDGILP 113

Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains. Length = 113
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|111714 pfam02847, MA3, MA3 domain Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>gnl|CDD|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 726
KOG0403645 consensus Neoplastic transformation suppressor Pdc 100.0
KOG0403645 consensus Neoplastic transformation suppressor Pdc 100.0
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.89
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.88
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 99.88
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 99.88
KOG0401970 consensus Translation initiation factor 4F, riboso 99.17
KOG0401970 consensus Translation initiation factor 4F, riboso 99.04
PLN032181060 maturation of RBCL 1; Provisional 96.61
PLN03077 857 Protein ECB2; Provisional 95.43
PLN03218 1060 maturation of RBCL 1; Provisional 94.77
PF04774106 HABP4_PAI-RBP1: Hyaluronan / mRNA binding family; 91.25
PLN03077 857 Protein ECB2; Provisional 89.15
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 86.41
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=6.7e-154  Score=1223.48  Aligned_cols=614  Identities=59%  Similarity=0.892  Sum_probs=587.3

Q ss_pred             CCCCCCCccccccccccCCCCCCCCCCCCCCCC-CCCccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q 044962           80 PKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDS-TEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELREL  158 (726)
Q Consensus        80 ~kk~G~ggK~~wg~~~~~~~~~~~D~~DPnyd~-ee~~~~~~~~~~~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL  158 (726)
                      .+|-|.|||+|||...|       |.||||||+ |++|.++.+++. -+.++++|++.+||+|||++||+.-|+..++||
T Consensus         5 ~~~~~~g~~~~wg~~~d-------~d~dp~~dtge~~~~lv~s~~~-~pl~dykk~~~sii~eyfstgdv~vaa~dl~el   76 (645)
T KOG0403|consen    5 SPKKGEGSKGTWGVLDD-------DDNDPNYDTGEEPYHLVGSPVS-DPLSDYKKKAVSIIDEYFSTGDVVVAASDLKEL   76 (645)
T ss_pred             ccccccCCCCccccccC-------CCCCCCCCCCCCcccccCCccC-CcHHHHHHHHHHHHHHHccCCCchhhHHHHHHh
Confidence            45567889999998876       449999999 999998888876 779999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHc
Q 044962          159 RKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVD  238 (726)
Q Consensus       159 ~~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d  238 (726)
                      ...+||++||+++|++||||+++|+||+|.|||.||+.+|++.||..||..|+++++|+.+|||+|.+.||.||||||+|
T Consensus        77 g~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s~ddl~vdipdavnvlalfiaraivd  156 (645)
T KOG0403|consen   77 GSSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLESADDLAVDIPDAVNVLALFIARAIVD  156 (645)
T ss_pred             ccccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcccceecCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhcCChhhHhhh
Q 044962          239 DILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWGGSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRC  318 (726)
Q Consensus       239 ~~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v~~~Wgg~~~~~vee~k~~i~~lL~EY~~sgD~~EA~rc  318 (726)
                      ++|||.||.+.+..+|.+++|+++++.|+|+||+++|+.+.++..|||...+++||+|++|+..+.||..+||..|||||
T Consensus       157 dilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rc  236 (645)
T KOG0403|consen  157 DILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRC  236 (645)
T ss_pred             hccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCccHHHHHHHHHHHHhcccchhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccccccchhHHHHHHHHH
Q 044962          319 TNDLKVPFFHHEIVKRAVTMAMERRQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLISK  398 (726)
Q Consensus       319 lreL~~p~fhhElV~~aL~~alE~~~~~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v~~  398 (726)
                      +|+|++||||||.|+++|+++||+..++..+++++++....|+||++||.|||.|+.++++|++||||.|+..|+.++.+
T Consensus       237 iR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~K  316 (645)
T KOG0403|consen  237 IRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPK  316 (645)
T ss_pred             HHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhccc
Confidence            99999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccCCCCcccccCCCccHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccCCcchhHHHHHHHHHHhh
Q 044962          399 AASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKAQSIIQEYFLSGDILEVSGCLESEKKSSLNEVNAIFVKRLITLAM  478 (726)
Q Consensus       399 ~~~~g~l~~~~~~~~~~~~~k~~~~~~~~~efkk~~~~ii~EYf~~~D~~Ev~~~l~e~~~L~~~~~~~~~vk~~I~~al  478 (726)
                      +.+.||++.+..+.....+.    ..+..+.|||.+.+||+|||.|||+.|++++|++   |+.|+|++.|+|++|++||
T Consensus       317 a~s~gwl~e~s~k~~s~~~g----~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~D---Ln~~E~~~~f~k~lITLAl  389 (645)
T KOG0403|consen  317 APSGGWLDENSFKETSVLPG----DSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRD---LNLPEYNPGFLKLLITLAL  389 (645)
T ss_pred             CCCCCccchhhhcccccCCC----cchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHH---cCCccccchHHHHHHHHHh
Confidence            99999999555444322221    1344899999999999999999999999999999   8999999999999999999


Q ss_pred             ccCchhHhHHHHHHHhcc---CChHHHHHHHHHHHhhccccccCchhhHHHHHHHHHHHHhhCCCCchhHHHhhhccCCC
Q 044962          479 DRKNREKEMASVLLSSLF---LPADDVVNGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGSQFLGA  555 (726)
Q Consensus       479 drk~~eREl~S~LLs~L~---l~~~~i~~gF~~ll~~l~Dl~lD~P~a~~~la~FiARAV~Dd~l~p~~l~~~~~~~~~~  555 (726)
                      |||++||||+|+|||+||   +++.|+.+||.+||++++|+.||+|+|++.||+||||||+||+|.|.+|+++.++++ +
T Consensus       390 drK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp-~  468 (645)
T KOG0403|consen  390 DRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLP-P  468 (645)
T ss_pred             ccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCC-C
Confidence            999999999999999999   999999999999999999999999999999999999999999999999999999998 7


Q ss_pred             cchHHHHHHHHHHHHhcccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHH
Q 044962          556 ESIGSKVLQMAKSLLNARLSGERILRCWGGGGGSSRPGWAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEI  635 (726)
Q Consensus       556 ~~~g~~~l~~a~~ll~~~~~~~rl~~~WG~g~~~~~~~~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhel  635 (726)
                      .+.|++++++|++||++||+++|++||||+||+    ||+|+++++||.+||+||.++||+.|||+||+||+|||||||+
T Consensus       469 ~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~----g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEv  544 (645)
T KOG0403|consen  469 VSQGRETLDKARSLLSARHAGERLLRVWGGGGG----GWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEV  544 (645)
T ss_pred             chhhHHHHHHHHHHHHHhhcccchhheecCCCC----cchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHH
Confidence            789999999999999999999999999999985    6999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccch--HHHHHHHHHHhCCCCCHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCCcchhh
Q 044962          636 VKKALVSVIEKKNE--RLWGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWF  713 (726)
Q Consensus       636 V~~ai~~~lE~~~e--~~~~LL~~L~~~~~it~~q~~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~~~~~~  713 (726)
                      ||+||+|+||++++  ++++||+.|+++|+||.+||++||+||++.|+||+||||+|++.|..||+.|+++|+|..+++.
T Consensus       545 VkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~i~~~l~~  624 (645)
T KOG0403|consen  545 VKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGIISKQLRD  624 (645)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCchhHHhhh
Confidence            99999999999986  8999999999999999999999999999999999999999999999999999999955554443

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PF04774 HABP4_PAI-RBP1: Hyaluronan / mRNA binding family; InterPro: IPR006861 This entry includes the HABP4 protein family of hyaluronan-binding proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1 Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query726
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 7e-28
3eiq_C358 Crystal Structure Of Pdcd4-eif4a Length = 358 2e-26
3eij_A321 Crystal Structure Of Pdcd4 Length = 321 2e-26
2zu6_B307 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 3e-24
2nsz_A129 1.15 Angstrom Crystal Structure Of The Ma3 Domain O 2e-14
2kzt_B131 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 3e-14
2hm8_A136 Solution Structure Of The C-Terminal Ma-3 Domain Of 4e-14
2ion_A152 Crystal Structure Of The C-terminal Ma3 Domain Of P 7e-14
2ggf_A137 Solution Structure Of The Ma3 Domain Of Human Progr 8e-14
2iol_A150 Crystal Structure Of The C-Terminal Ma3 Domain Of P 3e-13
2ios_A150 Crystal Structure Of The C-Terminal Ma3 Domain Of P 2e-12
2kzt_A163 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 4e-08
2kzt_A163 Structure Of The Tandem Ma-3 Region Of Pdcd4 Length 2e-07
1ug3_A339 C-Terminal Portion Of Human Eif4gi Length = 339 7e-08
1ug3_A 339 C-Terminal Portion Of Human Eif4gi Length = 339 1e-05
3l6a_A364 Crystal Structure Of The C-Terminal Region Of Human 1e-07
3l6a_A364 Crystal Structure Of The C-Terminal Region Of Human 1e-04
2rg8_A165 Crystal Structure Of Programmed For Cell Death 4 Mi 2e-07
2rg8_A165 Crystal Structure Of Programmed For Cell Death 4 Mi 2e-06
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 145/313 (46%), Gaps = 23/313 (7%)
Query: 103 IDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELRKPN 162
           +D  DPNYD  +E           D   F+K  T I++EYF   D    A  LR+L    
Sbjct: 25  VDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE 84
Query: 163 YNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIP 222
                    +S+A++     +EM + LLS L    +    V + F KL++   +L +D P
Sbjct: 85  MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTP 144
Query: 223 DTVDVLALFIARAVVDDILPPAFLK---------KQMAALPKESKGIEVLKRAEKGYLEA 273
               ++  FIARAV D IL   ++          +  AAL K +    VL    KG    
Sbjct: 145 RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKAT----VLLSMSKG---- 196
Query: 274 PLHAEIIERRWG-GSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRCTNDLKVPFFHHEIV 332
               +  +  WG G   + V  +   I+ LL EY++SGD  EA  C  +L+VP FHHE+V
Sbjct: 197 ---GKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELV 253
Query: 333 KRAVTMAMER--RQAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARG 390
             A+ M +E     A   +L LLK   +   I   Q+ +G+ RI + + D++LD+P++  
Sbjct: 254 YEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYS 313
Query: 391 ILHSLISKAASEG 403
           +L   + +    G
Sbjct: 314 VLERFVEECFQAG 326
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a Length = 358 Back     alignment and structure
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4 Length = 321 Back     alignment and structure
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 307 Back     alignment and structure
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4 Length = 129 Back     alignment and structure
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 131 Back     alignment and structure
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4 Length = 136 Back     alignment and structure
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4 (mouse); Form2 Length = 152 Back     alignment and structure
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4 Length = 137 Back     alignment and structure
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4 (Mouse); Form 1 Length = 150 Back     alignment and structure
>pdb|2IOS|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4 (Mouse); Form 3 Length = 150 Back     alignment and structure
>pdb|2KZT|A Chain A, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 163 Back     alignment and structure
>pdb|2KZT|A Chain A, Structure Of The Tandem Ma-3 Region Of Pdcd4 Length = 163 Back     alignment and structure
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi Length = 339 Back     alignment and structure
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi Length = 339 Back     alignment and structure
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97 Length = 364 Back     alignment and structure
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97 Length = 364 Back     alignment and structure
>pdb|2RG8|A Chain A, Crystal Structure Of Programmed For Cell Death 4 Middle Ma3 Domain Length = 165 Back     alignment and structure
>pdb|2RG8|A Chain A, Crystal Structure Of Programmed For Cell Death 4 Middle Ma3 Domain Length = 165 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query726
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 1e-102
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 4e-69
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 8e-41
3eiq_C 358 Programmed cell death protein 4; PDCD4, anti-oncog 2e-20
2zu6_B307 Programmed cell death protein 4; protein-protein c 3e-84
2zu6_B307 Programmed cell death protein 4; protein-protein c 1e-71
2zu6_B307 Programmed cell death protein 4; protein-protein c 2e-41
2zu6_B307 Programmed cell death protein 4; protein-protein c 1e-20
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 3e-44
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 1e-43
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 2e-24
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 2e-22
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 2e-34
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 2e-33
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 2e-25
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 1e-18
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 2e-34
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 3e-34
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 5e-25
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 1e-17
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 8e-34
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 2e-21
3l6a_A 364 Eukaryotic translation initiation factor 4 gamma; 2e-21
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 8e-33
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 8e-24
1ug3_A 339 EIF4GI, eukaryotic protein synthesis initiation fa 2e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
 Score =  317 bits (812), Expect = e-102
 Identities = 101/358 (28%), Positives = 158/358 (44%), Gaps = 5/358 (1%)

Query: 80  PKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIV 139
           P      GKG WG      D   +D  DPNYD  +E           D   F+K  T I+
Sbjct: 2   PLGSPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPII 61

Query: 140 EEYFATDDVLSAANELRELRKPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAID 199
           +EYF   D    A  LR+L             +S+A++     +EM + LLS L    + 
Sbjct: 62  QEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMS 121

Query: 200 PPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDDILPPAFLKKQMAALPKESKG 259
              V + F KL++   +L +D P    ++  FIARAV D IL   ++      +    + 
Sbjct: 122 TNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCV-QA 180

Query: 260 IEVLKRAEKGYLEAPLHAEIIERRWG-GSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRC 318
              L +A    L      +  +  WG G   + V  +   I+ LL EY++SGD  EA  C
Sbjct: 181 RAALDKA-TVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHC 239

Query: 319 TNDLKVPFFHHEIVKRAVTMAMERR--QAEGRLLGLLKEASEEGLINASQITKGFGRIID 376
             +L+VP FHHE+V  A+ M +E     A   +L LLK   +   I   Q+ +G+ RI +
Sbjct: 240 LKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 299

Query: 377 TVDDLSLDIPNARGILHSLISKAASEGWLCASSLKSLSSEPEKRLLEDTDTKLFKMKA 434
            + D++LD+P++  +L   + +    G +         S   KR + + D    K ++
Sbjct: 300 EIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPES 357
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Length = 358 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Length = 307 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A Length = 165 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Length = 129 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Length = 152 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query726
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 100.0
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 100.0
2zu6_B307 Programmed cell death protein 4; protein-protein c 100.0
2zu6_B307 Programmed cell death protein 4; protein-protein c 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 100.0
2rg8_A165 Programmed cell death protein 4; MA3 domain, heat 100.0
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 100.0
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.98
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.97
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.97
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 99.96
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 99.96
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.92
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.91
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 87.99
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=7.1e-83  Score=691.16  Aligned_cols=338  Identities=29%  Similarity=0.434  Sum_probs=267.1

Q ss_pred             CCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 044962           80 PKKGGCGGKGTWGGLLDTEDNYFIDPNDPNYDSTEEYERPSAKKSAGDLDEFKKKATIIVEEYFATDDVLSAANELRELR  159 (726)
Q Consensus        80 ~kk~G~ggK~~wg~~~~~~~~~~~D~~DPnyd~ee~~~~~~~~~~~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~EL~  159 (726)
                      |.|+|+|||||||++++.+++..+|++||||||+++..+..+.+|++|++||+|++++||+|||+++|++||++||+||+
T Consensus         2 ~~~~~~~gk~~wg~~~~~~~~~~~d~~dpnyd~~~~~~~~~~~~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~   81 (358)
T 3eiq_C            2 PLGSPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN   81 (358)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred             CCCCCCCCCCcCCCCcCcCcccCCCccCCCCCCCCCCceeecCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence            77899999999999998887788999999999955446667778999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHHHcC
Q 044962          160 KPNYNYYFVKRLISIAMDRHDKEKEMAAVLLSALYADAIDPPQVYRGFIKLVESADDLIVDIPDTVDVLALFIARAVVDD  239 (726)
Q Consensus       160 ~p~~~~~~V~~~I~~aLDrk~~eRE~~s~LLs~L~~~vls~~~i~~Gf~~lLe~l~DL~lDiP~a~~~La~fiaraV~d~  239 (726)
                      +|.|++.||+++|++||||+++||||+|+||++||++++|++||.+||.++|++++|+++|+|+||+|||.||||||+||
T Consensus        82 ~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~  161 (358)
T 3eiq_C           82 LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG  161 (358)
T ss_dssp             CCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHhhhCCCCchhHHHHHHHHhhhhcccchHHHHHHHhC-CCCCCchHHHHHHHHHHHHHHHhcCChhhHhhh
Q 044962          240 ILPPAFLKKQMAALPKESKGIEVLKRAEKGYLEAPLHAEIIERRWG-GSKNKTVEDVKVRINDLLIEYVVSGDKKEAFRC  318 (726)
Q Consensus       240 ~lp~~fl~~~~~~~~~~~~g~~~L~~a~k~lL~~~~~~~~v~~~Wg-g~~~~~vee~k~~i~~lL~EY~~sgD~~EA~rc  318 (726)
                      +|||+||.++...+ .+..|.++|++|. ++|+++|+.+|++|+|| |++.+|+++++++|+.+|+||+.++|++||++|
T Consensus       162 ~l~~~~l~~~~~~~-~~~~~~~~l~~a~-~~L~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~c  239 (358)
T 3eiq_C          162 ILCNTYIDSYKGTV-DCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHC  239 (358)
T ss_dssp             CSCSSTTGGGC----CCHHHHHHHHHHH-HHHTC---------CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CCCHHHHHHHhhcc-cchHHHHHHHHHH-HHHhccchHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            99999999987655 4578889999996 79999999999999999 556679999999999999999999999999999


Q ss_pred             hhcCCCCCccHHHHHHHHHHHHhcc--cchhHHHHHHHHHhhCCCcChHHHHHHHHHhhhccccccccccchhHHHHHHH
Q 044962          319 TNDLKVPFFHHEIVKRAVTMAMERR--QAEGRLLGLLKEASEEGLINASQITKGFGRIIDTVDDLSLDIPNARGILHSLI  396 (726)
Q Consensus       319 lreL~~p~fhhElV~~aL~~alE~~--~~~~~i~~LLk~l~~~~lit~~Q~~kGF~Rv~~~ldDi~LDvP~A~~~l~~~v  396 (726)
                      ++||++||||||+|+++|.++||+.  ...+.+++||+++..++++|++||.+||.||++.|+||.||||+|+.+|++|+
T Consensus       240 i~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v  319 (358)
T 3eiq_C          240 LKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV  319 (358)
T ss_dssp             HHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             HHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHH
Confidence            9999999999999999999999975  45788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccCCCCccc
Q 044962          397 SKAASEGWLCASSLKSLSSEPEK  419 (726)
Q Consensus       397 ~~~~~~g~l~~~~~~~~~~~~~k  419 (726)
                      .+|+.+|||+.+|+..+|+||||
T Consensus       320 arai~~g~l~~~f~~~~p~r~rk  342 (358)
T 3eiq_C          320 EECFQAGIISKQLRDLCPSRGRK  342 (358)
T ss_dssp             HHHHHHTSSCHHHHTTCCCC---
T ss_pred             HHHHHCCCCCHHHHHhCcccCCc
Confidence            99999999999999999999999
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 726
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 2e-34
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 1e-31
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 2e-30
d2nsza1129 a.118.1.14 (A:322-450) Programmed cell death 4, PD 3e-25
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 4e-34
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 1e-30
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 5e-29
d1ug3a1193 a.118.1.14 (A:1235-1427) Eukaryotic initiation fac 2e-27
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (316), Expect = 2e-34
 Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 596 VEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKNER----L 651
           V  +  +I  LL+EY   GD+ EA  C+KEL +P FHHE+V +A+V V+E   E     +
Sbjct: 3   VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMI 62

Query: 652 WGLLKECSDSGHITMNQMMKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSF 711
             LLK    S  IT++QM +G+ R+   + D+ LDVP +      +VE+    G +    
Sbjct: 63  LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQL 122
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query726
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.97
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.96
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 99.95
d1ug3a1193 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.93
d1ug3a2127 Eukaryotic initiation factor eIF4G {Human (Homo sa 89.33
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7e-31  Score=244.54  Aligned_cols=124  Identities=34%  Similarity=0.553  Sum_probs=118.0

Q ss_pred             CChHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhCCCCchHHHHHHHHHHHhcccc----hHHHHHHHHHHhCCCCCHHHH
Q 044962          594 WAVEDVKDKIGRLLEEYESGGDVREARRCIKELGMPFFHHEIVKKALVSVIEKKN----ERLWGLLKECSDSGHITMNQM  669 (726)
Q Consensus       594 ~~~e~l~~ki~~lL~EYl~~~D~~EA~~Cl~EL~~p~fhhelV~~ai~~~lE~~~----e~~~~LL~~L~~~~~it~~q~  669 (726)
                      +|++++++|++++|+||++++|++||++|++||++|+|||+||+++|+++||+++    +.++.||++|.++|+||++||
T Consensus         1 ~pv~~l~kk~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i   80 (129)
T d2nsza1           1 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM   80 (129)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            4789999999999999999999999999999999999999999999999999985    247999999999999999999


Q ss_pred             HHHHHHHHhccccccccccchHHHHHHHHHHHHHcCCCCcchhhhhhc
Q 044962          670 MKGFGRVEESLDDLALDVPDAKKQFIHYVEKAKTEGWLDSSFWFSKLD  717 (726)
Q Consensus       670 ~~Gf~rv~e~l~Di~lDvP~A~~~l~~lv~~~~~~g~l~~~~~~~~~~  717 (726)
                      .+||.++++.++|+++|+|+||++|++|+++|+.+|+||.+|...-|+
T Consensus        81 ~~Gf~~~l~~l~Dl~lDvP~a~~~l~~fi~rav~d~~l~~~~~~~~p~  128 (129)
T d2nsza1          81 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPS  128 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTT
T ss_pred             HHHHHHHHhhCcHHhhccccHHHHHHHHHHHHHHcCCCCHHHHhhCCC
Confidence            999999999999999999999999999999999999999999876543
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure