Citrus Sinensis ID: 044972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------
Protein Sequence
SCACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELRNGVPKLQCPIL
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHccccccccccccccccccccEEEEEEcccEEEEEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHccccccccHHHHHHHHccEEEEEEcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccccHcccHHHHHccccccccHHHEccccEcccccEEEEEEccccHHcccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcEEEEEEEcccHcccccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
SCACEYIKICTTtgnsilgrrafkskvgssedtkTCEMQRTmlkdgqvvnvidtpaiarlfdssadfEFVSKEIVKCIGMAKDGIHAVLIVFSVRnrfseeegAAIHSLESLFGKKVFDYMIVVFTrgdeledndetledylgpecpkplKEILQLCDNRRVLFDNKTKDAAKRteqnggqpyIDEIFAELKKRATKLRDQQVEvdslkgysKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEElrngvpklqcpil
Flexible Loop (DISEMBL)
SCACEYIKIctttgnsilgrrafkskvgssedtkTCEMqrtmlkdgqvvnVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHsleslfgkkvFDYMIVVFTrgdeledndETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTkdaakrteqnggqpyiDEIFAELKKRATklrdqqvevdslkgyskreiSELKEQMKKSYEDQLKRSIEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLergqreteelrngvpklqcpil
Low Complexity Region (SEG)
SCACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGdeledndetledylGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELRNGVPKLQCPIL
Disordered region (IsUnstruct)
*CACEYIKICTTTGNSILGRRAF*****************TMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFD*****************YIDEIFA**********************************************************************************************************************
Disordered Region (DISOPRED)
******I**CTTTGNSILGRRAFKSK**********EMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKT*************PYIDEIFAELK************************************************************************************************************KLQCPIL
Disordered Region (DISEMBL)
SCACEYIKICTTTGNSILGRRAFK**********TCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKL***********NGVPKLQCPIL
Disordered Region (DISPRO)
SCACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRT**NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELRNGVPKLQCPIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SCACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYxxxxxxxxxxxxxxxxxxxxxxxxxxxxEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELRNGVPKLQCPIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	307	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.739	0.643	0.417	3e-46
O81025	463	Putative protein PHLOEM P	no	no	0.798	0.529	0.376	2e-45
Q9NUV9	329	GTPase IMAP family member	yes	no	0.768	0.717	0.292	6e-23
Q8K3K9	310	GTPase IMAP family member	no	no	0.553	0.548	0.340	6e-21
Q99JY3	219	GTPase IMAP family member	no	no	0.504	0.707	0.355	6e-20
Q8NHV1	300	GTPase IMAP family member	no	no	0.697	0.713	0.280	2e-18
Q8ND71	665	GTPase IMAP family member	no	no	0.527	0.243	0.337	2e-18
Q75N62	688	GTPase IMAP family member	no	no	0.537	0.239	0.331	6e-18
Q96F15	307	GTPase IMAP family member	no	no	0.521	0.521	0.311	3e-17
Q8BWF2	308	GTPase IMAP family member	no	no	0.514	0.512	0.331	3e-16

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/249 (41%), Positives = 148/249 (59%), Gaps = 22/249 (8%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSI+  + FKSK  SS  T  C   + +  +G ++NVIDTP    LFD S   EF+
Sbjct: 56  SATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPG---LFDLSVSAEFI 112

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIVKC+ +A  G+HAVL+V SVR R S+EE   + +L+ LFG K+ DY+IVVFT GD 
Sbjct: 113 GKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLIVVFTGGDV 172

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDN----------------KTKDAAKR 174
           LED+  TLEDYLG   P  LK +L LC  R +LFDN                K  D  ++
Sbjct: 173 LEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELLKLIDLVRK 232

Query: 175 TEQNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRS 234
             QN   PY DE++  +K+   + + +Q E++S KG+S+ +++ L ++++   E  LK  
Sbjct: 233 --QNNNIPYTDEMYHMIKEENERHKKEQEELES-KGHSEEQLAALMKELQIMNERNLKAM 289

Query: 235 IEMVESKLK 243
            EM+E  +K
Sbjct: 290 AEMMEKNMK 298

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/271 (37%), Positives = 169/271 (62%), Gaps = 26/271 (9%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           ++TGN++LG + FKSK  +   T  CEM R  ++DG ++NVIDTP +   F    D   +
Sbjct: 19  SSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGLCDSFVPGDD---I 75

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
           S EI+ C+ MA++GIHAVL+V S R R S+EE + +++L+ +FG ++ DY IVVFT GD+
Sbjct: 76  SNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDYCIVVFTGGDD 135

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRT--------------E 176
           LE++D+TL+DY    CP+ L ++L+LC  R+VLFDNK+KD  K+               E
Sbjct: 136 LEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQLLARVENVGE 195

Query: 177 QNGGQPYIDEIFAELKKRAT-KLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSI 235
           Q GG PY  ++  ++K+    +LR+++  ++S K  ++ E++E+++ +        K  +
Sbjct: 196 QTGGIPYTYQLHRKIKEENDERLREEERVIES-KNRAEAELAEMQQNLLME-----KEKL 249

Query: 236 EMVESKLKETTTRLE--QQLAEEHLARLKAE 264
           +M E+K K+   + E  ++L E+  A+ +AE
Sbjct: 250 QMEEAKNKQLIAQAEANEKLMEQERAKNRAE 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  108 bits (269), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 140/253 (55%), Gaps = 17/253 (6%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILGR+ F S   +   TK CE + +  K+ ++V V+DTP I   FD+       
Sbjct: 44  SATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGI---FDTEVPNAET 99

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
           SKEI++CI +   G HA+L+V  +  R++EEE  A   +  +FG++   +MI++FTR D+
Sbjct: 100 SKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 158

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDEIFAE 190
           L D +  L DYL  E P+ +++++ +  +R    +NK   A +  ++      I  +  E
Sbjct: 159 LGDTN--LHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 215

Query: 191 LKKRATKLR-------DQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLK 243
            K+     R       + Q +  +++   + E+   K ++++ YE+++++  + VE + +
Sbjct: 216 NKEGCYTNRMYQRAEEEIQKQTQAMQELHRVELEREKARIREEYEEKIRKLEDKVEQEKR 275

Query: 244 ETTTRLEQQLAEE 256
           +   ++E++LAE+
Sbjct: 276 K--KQMEKKLAEQ 286

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 21/191 (10%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           ++TGNSILGR+AF S + +   TK CE +   + DG+ + V+DTP I   FD+       
Sbjct: 44  SSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGI---FDTEVPDADT 99

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEI +C+ +   G HA+L+V  +   ++ EE  A   L S+F KK   +MI++ TR D+
Sbjct: 100 QKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMILLLTRKDD 158

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTE-------------Q 177
           LED D  + +YL    P+ L+E++    NR  LF+NK   A +  +             +
Sbjct: 159 LEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKASGAEQEEQKRQLLTLVQSMVRE 215

Query: 178 NGGQPYIDEIF 188
           NGG+ + ++++
Sbjct: 216 NGGKYFTNKMY 226

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 8/163 (4%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           ++TGNSILG + F S + +   TK CE +R    DG+ + V+DTP I   FD+       
Sbjct: 44  SSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGI---FDTEVPDADT 99

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            +EI + + +   G HA+L+V  +  R++ EE  A   +  +FGK+   +MI++ TR D+
Sbjct: 100 QREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMILLLTRKDD 158

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAK 173
           LED D  + +YL  + PK  +E++    NR  LF+N+   A K
Sbjct: 159 LEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASGAEK 198

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 122/228 (53%), Gaps = 14/228 (6%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + T N+ILG   F S++ +   TK C+ + +    G+ + V+DTP    LFD+    +  
Sbjct: 22  SATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPG---LFDTKESLDTT 77

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEI +CI  +  G HA+++V  +  R++EEE   +  ++++FGK    +M+++FTR +E
Sbjct: 78  CKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMVILFTRKEE 136

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDEIFAE 190
           LE   ++  D++  +    LK I++ C NR   F N     +K+T +   +  + E+  E
Sbjct: 137 LE--GQSFHDFIA-DADVGLKSIVKECGNRCCAFSN-----SKKTSKAEKESQVQEL-VE 187

Query: 191 LKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEMV 238
           L ++  +  +     D +   ++  + + +E ++K Y DQL   I++V
Sbjct: 188 LIEKMVQCNEGAYFSDDIYKDTEERLKQREEVLRKIYTDQLNEEIKLV 235

Homo sapiens (taxid: 9606)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 4/166 (2%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILG   F S++ +   TKT +  R    DGQ V V+DTP+  ++ D   D   +
Sbjct: 452 SATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQMLDVEKDPSRL 510

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            +E+ +C+   + G    ++VF +  RF+EE+  A+  LE++FG     Y I++FTR ++
Sbjct: 511 EEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFTKYAIMLFTRKED 569

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTE 176
           L   +  LED++     K L+ I + C  R   F+NK    A+ T+
Sbjct: 570 LGAGN--LEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQETQ 613

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 4/169 (2%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGN+ILGR AF S++ +   T + +  +  L D Q V V+DTP+  +   +  D   +
Sbjct: 489 SATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPSFIQTPGTEKDPSRL 547

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            +EI  C+ + ++G+   ++V  +  RF++E+   +  LE+ F + +  YMIV+FTR ++
Sbjct: 548 KEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKED 606

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNG 179
           L D D  L DY      K LK+IL+ C+ R   F+NK     + T+  G
Sbjct: 607 LGDGD--LHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQETQVKG 653

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILG+  F+SK+ +   T+TC++ +T   +G+ V V+DTP+I   F+S AD + +
Sbjct: 41  SATGNSILGQPVFESKLRAQSVTRTCQV-KTGTWNGRKVLVVDTPSI---FESQADTQEL 96

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            K I  C  ++  G H +L+V  +  RF+ ++  AI  ++ +FG     +++++FT  ++
Sbjct: 97  YKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKED 155

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ 177
           L    + L+DY+       LK++++ C+ R   F+N      +R +Q
Sbjct: 156 L--GGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQ 200

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 11/169 (6%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSIL R AF+S++     T+T + + T   +G+ + V+DTP I   F+S A  + +
Sbjct: 40  SATGNSILRRPAFQSRLRGQSVTRTSQAE-TGTWEGRSILVVDTPPI---FESKAQNQDM 95

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            K+I  C  +   G H +L+V  +  RF+ E+  A+  ++ +FG  V  +MIV+FTR ++
Sbjct: 96  DKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMAVRMVKEVFGVGVMRHMIVLFTRKED 154

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNG 179
           LE  +++LE+++     + L+ + Q C  R   F+N+    A   EQ G
Sbjct: 155 LE--EKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNR----ASGEEQQG 197

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
255539412	339	aig1, putative [Ricinus communis] gi|223	0.954	0.864	0.691	1e-113
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.957	0.864	0.678	1e-111
296089429	345	unnamed protein product [Vitis vinifera]	0.957	0.852	0.678	1e-111
224146305	335	predicted protein [Populus trichocarpa]	0.938	0.859	0.647	1e-103
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.957	0.854	0.612	2e-99
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.944	0.828	0.610	1e-97
363814318	336	uncharacterized protein LOC100807910 [Gl	0.944	0.863	0.607	5e-97
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.947	0.853	0.633	7e-94
388500386	335	unknown [Lotus japonicus]	0.908	0.832	0.583	6e-91
357470431	365	AIG1 [Medicago truncatula] gi|355506555|	0.957	0.805	0.540	3e-89

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/311 (69%), Positives = 243/311 (78%), Gaps = 18/311 (5%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNS+LGR+AFKS+  SS  T TCE+Q+T++ DGQV+NV+DTP    LFD SA+ EFV
Sbjct: 33  SATGNSLLGRKAFKSRASSSGVTSTCELQQTVITDGQVINVVDTPG---LFDFSAESEFV 89

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIVKCI MAKDGIHAVL+VFSVR RFS+EE AA+ SL++LFG K+FDYMIVVFT GDE
Sbjct: 90  GKEIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKIFDYMIVVFTGGDE 149

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
           LEDNDETLEDYLG ECP+PL+EIL LC NR VLFDNKTKD  KR EQ             
Sbjct: 150 LEDNDETLEDYLGRECPQPLQEILTLCKNRLVLFDNKTKDEFKRAEQVHQLLSLVNLVIA 209

Query: 178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
            NGGQPY DE+F ELK RA KLRDQQ EVDSLKGYSK EI ELKEQM +SYE+QLKR  E
Sbjct: 210 ENGGQPYTDELFVELKARAIKLRDQQEEVDSLKGYSKGEILELKEQMHRSYEEQLKRITE 269

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
           MVE KL+ETT RLEQQLAEE  ARLKAE  AQLAQ+KSN+EI  LRE LER Q+ET+ELR
Sbjct: 270 MVELKLRETTNRLEQQLAEEQAARLKAEEKAQLAQMKSNDEIRQLRENLERAQKETQELR 329

Query: 297 NGVPKLQCPIL 307
                 +C IL
Sbjct: 330 RQAES-RCNIL 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/311 (67%), Positives = 241/311 (77%), Gaps = 17/311 (5%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILGR++FKS+  SS  T TCE+QRT+L+DGQ+VNVIDTP    LFD SA+ +FV
Sbjct: 33  SATGNSILGRKSFKSRASSSGVTSTCELQRTILRDGQIVNVIDTPG---LFDLSAESDFV 89

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIVKCI +AKDG+HAVL+VFSVR RFS+EE AA+HSL++LFG K+ DYMIVVFT GDE
Sbjct: 90  GKEIVKCIDLAKDGVHAVLVVFSVRTRFSKEEEAALHSLQTLFGSKIIDYMIVVFTGGDE 149

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTE-------------- 176
           LEDNDETLEDYLG ECP+PLK+ L LC NR VLFDNKTKD AK+ E              
Sbjct: 150 LEDNDETLEDYLGRECPEPLKQTLLLCQNRLVLFDNKTKDEAKKYEQVQKLLSLVNSVIL 209

Query: 177 QNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
           QNGGQPY DE+F ELKK A KLRDQ  EVDSL+GYSKREI  LKEQM KSYE+QLKR  E
Sbjct: 210 QNGGQPYTDELFMELKKGAQKLRDQTEEVDSLEGYSKREILVLKEQMHKSYEEQLKRITE 269

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
           MVE KL+ETT +LE+QLAEE  ARLKAE  AQ AQ+ SN+EI  LRE LER QRETEELR
Sbjct: 270 MVEVKLRETTMKLERQLAEEQAARLKAEEIAQRAQLASNDEIRKLRENLERAQRETEELR 329

Query: 297 NGVPKLQCPIL 307
                 +C IL
Sbjct: 330 KRAESGKCAIL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/311 (67%), Positives = 241/311 (77%), Gaps = 17/311 (5%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILGR++FKS+  SS  T TCE+QRT+L+DGQ+VNVIDTP    LFD SA+ +FV
Sbjct: 38  SATGNSILGRKSFKSRASSSGVTSTCELQRTILRDGQIVNVIDTPG---LFDLSAESDFV 94

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIVKCI +AKDG+HAVL+VFSVR RFS+EE AA+HSL++LFG K+ DYMIVVFT GDE
Sbjct: 95  GKEIVKCIDLAKDGVHAVLVVFSVRTRFSKEEEAALHSLQTLFGSKIIDYMIVVFTGGDE 154

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTE-------------- 176
           LEDNDETLEDYLG ECP+PLK+ L LC NR VLFDNKTKD AK+ E              
Sbjct: 155 LEDNDETLEDYLGRECPEPLKQTLLLCQNRLVLFDNKTKDEAKKYEQVQKLLSLVNSVIL 214

Query: 177 QNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
           QNGGQPY DE+F ELKK A KLRDQ  EVDSL+GYSKREI  LKEQM KSYE+QLKR  E
Sbjct: 215 QNGGQPYTDELFMELKKGAQKLRDQTEEVDSLEGYSKREILVLKEQMHKSYEEQLKRITE 274

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
           MVE KL+ETT +LE+QLAEE  ARLKAE  AQ AQ+ SN+EI  LRE LER QRETEELR
Sbjct: 275 MVEVKLRETTMKLERQLAEEQAARLKAEEIAQRAQLASNDEIRKLRENLERAQRETEELR 334

Query: 297 NGVPKLQCPIL 307
                 +C IL
Sbjct: 335 KRAESGKCAIL 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/312 (64%), Positives = 235/312 (75%), Gaps = 24/312 (7%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILGR+AFKS+  SS  T +CE+QRT+L+DGQ++NVIDTP    LFD SA  EFV
Sbjct: 33  SATGNSILGRKAFKSRASSSGVTSSCELQRTVLRDGQIINVIDTPG---LFDFSAGSEFV 89

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            +EIVKCI MAKDGIHAVL+VFSVR RFS+EE AA+ SL++LFG K+ DYMIVVFT GDE
Sbjct: 90  GREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFGSKILDYMIVVFTGGDE 149

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRT--------------E 176
           LEDNDETLEDYLG ECP+PLKE+L LC+NRRVLF+NKTKD  K                E
Sbjct: 150 LEDNDETLEDYLGRECPQPLKEVLTLCENRRVLFNNKTKDVLKGVEQVQELLSLVNRVIE 209

Query: 177 QNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKG-YSKREISELKEQMKKSYEDQLKRSI 235
           QNGGQPY DE+FAE++K     R QQ EVDSLKG +S  EISEL+EQMK+ YEDQLKR  
Sbjct: 210 QNGGQPYSDELFAEIQKGEMNFRGQQEEVDSLKGNFSIGEISELQEQMKRQYEDQLKRVT 269

Query: 236 EMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEEL 295
           +MVE KLKE T  LE++LAEE  ARL+AE +AQL Q KSNEEI  LRE+LE+     EEL
Sbjct: 270 DMVEMKLKEATGNLERRLAEEQAARLRAEESAQLEQRKSNEEIRMLRERLEKAH---EEL 326

Query: 296 RNGVPKLQCPIL 307
           RN   K  C IL
Sbjct: 327 RN---KGGCAIL 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 191/312 (61%), Positives = 236/312 (75%), Gaps = 18/312 (5%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILGR+AF+S   S+  T TCE+QRT+L+DGQ+++VIDTP    LFD SA+ EF+
Sbjct: 36  SATGNSILGRKAFRSMSSSAGVTSTCELQRTVLEDGQILDVIDTPG---LFDFSAEPEFI 92

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
             EIVKCI MAKDGIHAVL+V SVR RFS EE AA+ SL   FG K+ DYM++VFT GD+
Sbjct: 93  GNEIVKCINMAKDGIHAVLVVLSVRTRFSREEQAAVQSLREFFGGKISDYMVLVFTGGDD 152

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
           LEDN+ETLEDYLG +CP+PLK+IL +C NRRVLFDNK+KD  K+ +Q             
Sbjct: 153 LEDNEETLEDYLGRDCPEPLKDILAMCGNRRVLFDNKSKDHLKKADQLKQLLSLVNVVVE 212

Query: 178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
            NGG+PY D++F ELKK A KLR+Q  EV++L GYSK+EI ELKEQM+KSYE+QL+R  E
Sbjct: 213 NNGGKPYTDDLFKELKKGAIKLRNQATEVNNLVGYSKQEILELKEQMQKSYEEQLRRITE 272

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
           +VESKLK+TT RLE+QLA+E  ARL+AE +A+ AQ KS+ EI  LRE LER QRETEELR
Sbjct: 273 VVESKLKDTTHRLEEQLAKEQAARLEAELSAKEAQKKSDNEIRKLREYLERAQRETEELR 332

Query: 297 N-GVPKLQCPIL 307
                +  C IL
Sbjct: 333 GRSADRGVCNIL 344

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/311 (61%), Positives = 230/311 (73%), Gaps = 21/311 (6%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGN+ILGR+AFKS+  SS  + +CE++ T L +GQ+VNVIDTP    LFD SA  EFV
Sbjct: 47  SATGNTILGRKAFKSRASSSAVSTSCELKTTELNNGQIVNVIDTPG---LFDLSAGSEFV 103

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIVKCI +AKDGIHAV++VFSVR RF+EEE  A+ SL++LFG K+ DYMIVVFT GDE
Sbjct: 104 GKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETALRSLQTLFGSKIVDYMIVVFTGGDE 163

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
           LE+NDETLEDYLG ECP+PLKEIL LC+NR VLFDNKTKD  KR  Q             
Sbjct: 164 LEENDETLEDYLGRECPEPLKEILVLCENRCVLFDNKTKDEGKRFGQVQQLLSFVNMVLS 223

Query: 178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
            NGG+PY DE+F +LKK A +L +QQ EVDSLKGYSK EI E K+QM+++Y++QLKR  E
Sbjct: 224 RNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYSKGEILEFKKQMQQTYDEQLKRITE 283

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
           MVESKL+E T RLE+QLAEE  ARLKAE  A LAQ++S++EI  LRE LE+   E  +  
Sbjct: 284 MVESKLREATMRLEEQLAEEQAARLKAEENAMLAQMRSDDEIRKLREHLEKAHEELRKRG 343

Query: 297 NGVPKLQCPIL 307
            G     C IL
Sbjct: 344 GG----GCAIL 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 189/311 (60%), Positives = 227/311 (72%), Gaps = 21/311 (6%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGN+ILGR+ FKS+  SS  + +CE+Q T L DGQ+VNVIDTP    LFD S   EFV
Sbjct: 33  SATGNTILGRKVFKSRASSSAVSTSCELQTTELNDGQIVNVIDTPG---LFDLSVGSEFV 89

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIVKCI +AKDGIHAV++VFSVR RF+EEE  A+ SL++LFG K+ DYMIVVFT GDE
Sbjct: 90  GKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETALRSLQTLFGSKIVDYMIVVFTGGDE 149

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
           LE+N ETLEDYLG ECP+PLKEIL LCDNR VLFDNKTKD  KR  Q             
Sbjct: 150 LEENAETLEDYLGRECPEPLKEILVLCDNRCVLFDNKTKDEGKRFGQVQQLLSFVNTVLS 209

Query: 178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
            NGG+PY DE+F +LKK A +L +QQ EVDSLKGYSK EI + K+QM+++Y+DQLKR  E
Sbjct: 210 RNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYSKGEILKFKKQMQQTYDDQLKRITE 269

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
           +VESKL+E T RLEQQL EE  ARLKAE  A LAQ++S++EI  LRE LE+   E  +  
Sbjct: 270 IVESKLREATMRLEQQLVEEQAARLKAEENAMLAQMRSDDEIRKLREHLEKAHEELRKRG 329

Query: 297 NGVPKLQCPIL 307
            G    +C IL
Sbjct: 330 EG----RCAIL 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  349 bits (896), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 197/311 (63%), Positives = 230/311 (73%), Gaps = 20/311 (6%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILGR+AFKS+  SS  T T E+Q T+L DGQ ++VIDTP    +FD SA  +FV
Sbjct: 37  SATGNSILGRKAFKSRACSSGVTVTSELQTTVLSDGQEIDVIDTPG---MFDFSAGSDFV 93

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIVKCI MAKDGIHAVL+VFSVR RFS EE AA+ SL++LFG K+ +YMIVVFT GDE
Sbjct: 94  GKEIVKCIDMAKDGIHAVLVVFSVRTRFSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDE 153

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTE-------------- 176
           LE+N+ETLEDYLG  CP PLK+IL LC NR VLFDNKTKD  ++                
Sbjct: 154 LEENEETLEDYLGRSCPDPLKDILALCQNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVM 213

Query: 177 QNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
           QNGGQPY DE+F+ELK  A KLRDQQ EVDSL+GY+++E+ ELKEQM +SY++QLKR  E
Sbjct: 214 QNGGQPYSDELFSELKAGAMKLRDQQKEVDSLEGYTRQELKELKEQMHRSYDEQLKRITE 273

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
           MVESKL+ETT RLEQQLAEE  ARLKAE  AQ AQ KSN+EI  LRE L+R Q   EELR
Sbjct: 274 MVESKLRETTMRLEQQLAEEQAARLKAEENAQHAQRKSNDEIRQLREHLQRAQ---EELR 330

Query: 297 NGVPKLQCPIL 307
                  C IL
Sbjct: 331 KRGESSNCAIL 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus]

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 175/300 (58%), Positives = 224/300 (74%), Gaps = 21/300 (7%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILG++ FKS+  S   T +CE   T+  DGQ VNVIDTP    LFD SA  +FV
Sbjct: 33  SATGNSILGKKVFKSRASSVGVTSSCE-SHTIELDGQTVNVIDTPG---LFDISAGSDFV 88

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIV CI +AKDGIHA+++VFSVR RFS+EE  A+ SL++LFG K++DY +VVFT GDE
Sbjct: 89  GKEIVNCINLAKDGIHAIIVVFSVRTRFSQEEATALRSLQTLFGDKIYDYTVVVFTGGDE 148

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTE-------------- 176
           LE+ D+TLEDYLG +CP+PLK++L LC+NRR+LFDNKTKD  KR+E              
Sbjct: 149 LEEEDQTLEDYLGCDCPEPLKDLLSLCENRRLLFDNKTKDERKRSEQVQQLFSFVNMVLS 208

Query: 177 QNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
           QNGG+PY D++FAELKK A KL +QQ +V+SL+G+S +EI E K+Q K++Y+DQLKR  E
Sbjct: 209 QNGGRPYTDDLFAELKKGALKLHNQQSQVNSLEGHSNKEILEYKKQAKQAYDDQLKRIAE 268

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
           MVESKL++ T RLEQQLA+E  ARLKAE  A LA+++S++EI  LR+ LER     EELR
Sbjct: 269 MVESKLRDATLRLEQQLAKEQAARLKAEENANLARVRSDKEIRELRKHLERAH---EELR 325

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470431|ref|XP_003605500.1| AIG1 [Medicago truncatula] gi|355506555|gb|AES87697.1| AIG1 [Medicago truncatula]

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/331 (54%), Positives = 223/331 (67%), Gaps = 37/331 (11%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILG++ FKS+  SS  T +CEM+ T L DGQ+VNVIDTP    LFD S   E +
Sbjct: 38  SATGNSILGKKVFKSRTSSSGVTTSCEMKTTELNDGQIVNVIDTPG---LFDFSVGIELL 94

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KEIVKCI +AKDGIHA+++VFSVR RF+EEE +A+ S++ LFG K+ DYMI+VFT GDE
Sbjct: 95  GKEIVKCIDLAKDGIHALIVVFSVRTRFTEEEESALRSVQKLFGSKIVDYMIIVFTGGDE 154

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTE-------------- 176
           LE  +ETL+ YLG +CP+PLK IL LC NR VLFDNKTKD  K++E              
Sbjct: 155 LEATNETLDQYLGRDCPEPLKAILSLCGNRCVLFDNKTKDEKKQSEQVQQLLSFVNVVIS 214

Query: 177 QNGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
           QNGG+PY DE+F ELKKR  +L+ QQ E D+LKG +K +I E K+Q +++Y DQL R  E
Sbjct: 215 QNGGRPYTDELFKELKKREMELQKQQREADALKGCTKEDILEHKKQSEQAYNDQLHRITE 274

Query: 237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRE----- 291
           MVESKL+  TTRLE+QLA+E  ARL+AE  A  AQ+KS+EEI  LR  LER   E     
Sbjct: 275 MVESKLRAATTRLEEQLAKEQAARLEAEKYAHAAQMKSDEEILKLRRNLERAHEELRLRA 334

Query: 292 ---------------TEELRNGVPKLQCPIL 307
                           EELR  VP+ +C IL
Sbjct: 335 QDTSFKKLIRHFEQAQEELRRRVPEDRCAIL 365

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	307
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.934	0.839	0.501	1.6e-70
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.908	0.708	0.394	7.7e-48
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.944	0.863	0.361	2.6e-47
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.925	0.804	0.356	9.3e-43
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.785	0.774	0.370	1.5e-42
TAIR|locus:2140548	335	AT4G09930 [Arabidopsis thalian	0.899	0.823	0.378	3.6e-41
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.778	0.711	0.373	7.5e-41
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.778	0.733	0.354	4.2e-40
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.840	0.557	0.337	9.9e-39
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.781	0.718	0.333	2.1e-38

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 153/305 (50%), Positives = 201/305 (65%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNSILGR+AF+S+  +   T TCE QR + +DG ++NV+DTP    LFD S   +F+
Sbjct:    38 SATGNSILGRKAFRSRARTVGVTSTCESQRVVQEDGDIINVVDTPG---LFDLSTAADFI 94

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
              KEIV+CI +A+DGIHA+L+VFSVR R +EEE   +  L++LFG K+ DYMIVVFT G  
Sbjct:    95 GKEIVRCISLAEDGIHAILLVFSVR-RLAEEEQTVLSFLQALFGSKIADYMIVVFTGGDE 153

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
                            CP+ LKEIL +CDNR VLF+NKT D  K+ EQ             
Sbjct:   154 LEENEETLEEYLADYCPEFLKEILGICDNRLVLFNNKTTDKVKKAEQVQKLLSLVESVVK 213

Query:   178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
              N G+PY DE+F EL++ A KLRDQ+ EV+ L+GYS  EI E K+Q+  SY+ QL R  E
Sbjct:   214 QNNGKPYSDELFHELQEEAIKLRDQKKEVELLQGYSNNEIDEFKKQIDMSYDRQLSRITE 273

Query:   237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
             MVE+KL++T  RLEQQL EE  ARL+AE  A   Q +S++EI  LRE LER ++ET+EL+
Sbjct:   274 MVETKLRDTAKRLEQQLGEEQAARLEAEKRANEVQKRSSDEIKKLRENLERAEKETKELQ 333

Query:   297 NGVPK 301
               + K
Sbjct:   334 KKLGK 338

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 119/302 (39%), Positives = 188/302 (62%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNSILGR+AFKSK  +S  T  CE+Q + L +GQ++NVIDTP    LF  S   EF 
Sbjct:    61 SATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPG---LFSLSPSTEFT 117

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
              +EI++C  + K+GI AVL+VFS++NR +EEE +A+ +L+ LFG K+ DYMIVVFT    
Sbjct:   118 CREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDYMIVVFTNEDS 177

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTK----DAAKRTEQ--N------ 178
                           + P   KEIL+ C++R+VLF N++       AK+ ++  N      
Sbjct:   178 LEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVLFRNRSNAPVSQKAKQVQELLNYVEEIA 235

Query:   179 --GGQPYIDEIFAELKKRATKLRDQQVEVDSLKG-YSKREISELKEQMKKSYEDQ-LKRS 234
                G+ Y+ ++  E+++  T  + +Q E+  +KG Y+++E+ ++K+ M+KS+E+Q L++ 
Sbjct:   236 RLNGKSYMADLSHEIRENETAFQIKQQEILEMKGLYTRQEMLQMKKDMEKSFENQQLRQM 295

Query:   235 IEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEE 294
             +E VE++L+ET  RLEQQL EE  ARL+ E  A+  + +S++ +  L +  E+ +R   E
Sbjct:   296 MERVETELRETKERLEQQLKEEKSARLELEKRAKEVEKRSSDVVKELND--EQAKRLESE 353

Query:   295 LR 296
              R
Sbjct:   354 SR 355

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 113/313 (36%), Positives = 189/313 (60%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNSILG+  F+SK      TK C++ ++ L +G  +NVIDTP    LF +S+  +F 
Sbjct:    31 SATGNSILGKTMFQSKARGKFITKECKLHKSKLPNGLTINVIDTPG---LFSASSTTDFT 87

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
              +EIV+C+ +AK GI AVL+VFS+RNR +EEE + + +L+ LFG ++ DY+IVVFT    
Sbjct:    88 IREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTLRTLKILFGSQIVDYIIVVFTNEDA 147

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDN-----------KTKDAAKRTEQ-- 177
                           +CP+  +EIL+ CD+R+VLFDN           +  D     EQ  
Sbjct:   148 LECGETLDDYLE--DCPE-FQEILEECDDRKVLFDNSYNAPVSKKDRQVHDLLNLVEQIS 204

Query:   178 --NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYS-KREISELKEQMKKSYEDQLKRS 234
               N G+ Y+ ++  EL++    ++++Q +++ +KG+S K+EIS++K++++KS+ + L+  
Sbjct:   205 KKNNGKSYMADLSHELRENEATIKEKQKQIEEMKGWSSKQEISQMKKELEKSHNEMLEGI 264

Query:   235 IEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEE 294
              E + ++LKE+   +++QLA+    R + E      Q  S++EI  LRE+L + ++ET  
Sbjct:   265 KEKISNQLKESLEDVKEQLAKAQAEREETEKKMNEIQKLSSDEIRRLREQLNKAEKETAS 324

Query:   295 LRNGVPKLQCPIL 307
             LR  + K +C +L
Sbjct:   325 LRTELNK-KCTVL 336

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 111/311 (35%), Positives = 171/311 (54%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNSI+  + FKSK  SS  T  C   + +  +G ++NVIDTP    LFD S   EF+
Sbjct:    56 SATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPG---LFDLSVSAEFI 112

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
              KEIVKC+ +A  G+HAVL+V SVR R S+EE   + +L+ LFG K+ DY+IVVFT G  
Sbjct:   113 GKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLIVVFTGGDV 172

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
                         G   P  LK +L LC  R +LFDNKTKD  K+T+Q             
Sbjct:   173 LEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELLKLIDLVRK 232

Query:   178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
              N   PY DE++  +K+   + + +Q E++S KG+S+ +++ L ++++   E  LK   E
Sbjct:   233 QNNNIPYTDEMYHMIKEENERHKKEQEELES-KGHSEEQLAALMKELQIMNERNLKAMAE 291

Query:   237 MVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEELR 296
             M+E  +K      +++L E+   R KA+  +   +++  E++  +  ++ R + E + L 
Sbjct:   292 MMEKNMK-IAMEAQEKLFEQ---REKAQEMSYQQKMEMQEKLKQMEGRM-RAEMEAQMLS 346

Query:   297 NGVPKLQCPIL 307
                 + QC IL
Sbjct:   347 ----RQQCSIL 353

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 96/259 (37%), Positives = 150/259 (57%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNS++G++ F SK  +S  T  C+    + KDG  +NVIDTP    LFD S   E++
Sbjct:    30 SATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVIDTPG---LFDLSVSAEYI 86

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
             SKEIV+C+ +A+ GIHAVL+V S R R ++EE   + +L++LFG ++ DY++VVFT G  
Sbjct:    87 SKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQILDYVVVVFTGGDV 146

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
                         G +CP  +KE++++  NR+V+ DNKT D  K+ EQ             
Sbjct:   147 LEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKAEQVHKLLSLVDDIRR 206

Query:   178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
                G+ Y D+ +  +K+ + KLR    E++S K YS+   +E+K Q    Y++ LK+  E
Sbjct:   207 SKCGEAYTDDTYHMIKEESEKLRKHHEELES-KNYSEECAAEMKNQSLILYKENLKQMSE 265

Query:   237 MVESKLKETTTRLEQQLAE 255
              +E KLK+     E+ L++
Sbjct:   266 QLEKKLKDAAEAQEKALSK 284

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140548 AT4G09930 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 115/304 (37%), Positives = 175/304 (57%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNSIL   AFKSK  ++  TK CE++ T   +GQ++NVIDTP +  LF S+   E  
Sbjct:    40 SATGNSILRSEAFKSKGQAAAVTKECELKSTKRPNGQIINVIDTPGLFSLFPSN---EST 96

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
              +EI+KC  +AK+GI AVL+VFS+R+R +EEE +    L++LFG  +FDY+IVVFT    
Sbjct:    97 IREILKCSHLAKEGIDAVLMVFSLRSRLTEEEKSVPFVLKTLFGDSIFDYLIVVFTNEDS 156

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDA----AKRTEQ--------- 177
                           E     KEIL  C+NR VLF+N+ + +    AK+ ++         
Sbjct:   157 LIDDNVTINEYL--EGSPDFKEILAACNNRMVLFENRLRTSKRKKAKQVQKLLDLVEEVE 214

Query:   178 --NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKG-YSKREISELKEQMKKSYEDQLKRS 234
               N  +P++ ++  E  +    + ++  ++ ++K  Y+K+E+S  KE+   S    L + 
Sbjct:   215 RKNNNKPFLFDLSHESMESEAVVDEKAKKIRAMKSNYTKQEMSNWKEEEVNS---PLAKK 271

Query:   235 IEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLERGQRETEE 294
             +E    K+ ETT+ LEQ+L +E  ARL+AE  A     +S+EEI  L+EKLER Q+E E+
Sbjct:   272 VE----KVIETTSLLEQKLNQEQNARLEAEKRANKLHEESSEEIKILKEKLERAQKELEK 327

Query:   295 LRNG 298
                G
Sbjct:   328 RDQG 331

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 96/257 (37%), Positives = 148/257 (57%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNSI+GR+ F+SK  +   T  C+  R +  DG ++NVIDTP    LFD +   EF+
Sbjct:    49 SATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGPIINVIDTPG---LFDLAVSAEFI 105

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
             SKEIV C+ +A++G+HAV++V S+  R S+EE  A+ +L+ LFG K+ DY+IVVFT G  
Sbjct:   106 SKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQMLFGGKIVDYLIVVFTCGDM 165

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDA---AKRTEQ---------- 177
                            CP+ LK +L+LC  RRV+FDN+TKD    AK+ +Q          
Sbjct:   166 LEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRTKDEGVKAKQVQQLLVHVAAIEK 225

Query:   178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
               GG P+ D +   +++ A +++ ++ E++  K  +  E + LK+Q+  SY   +     
Sbjct:   226 ETGGNPFTDTMHRRIQEEAARVKREEKEIEE-KNIADEEKAALKKQLDMSYSQNMNMMAL 284

Query:   237 MVESKLKETTTRLEQQL 253
             M+E   KET    E+Q+
Sbjct:   285 MMERIFKETAAANERQM 301

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 91/257 (35%), Positives = 150/257 (58%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNS++G++ F+S+  ++  T  CE    +   G  +NVIDTP    LFD S   E++
Sbjct:    33 SATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCGTGINVIDTPG---LFDLSVSAEYL 89

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
             S+EI+ C+ +A+DG+HAV++V SVR R S+EE A +++L+ +FG ++ DY++V+FT G  
Sbjct:    90 SQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTLQVIFGSQIIDYLVVLFTGGDE 149

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
                            CP+ LK +L+LC  RR+LFDN+T D  K+ +Q             
Sbjct:   150 LEANNMTLDDYLSKGCPEFLKTVLRLCGGRRILFDNRTTDEGKKVKQVQELLAHVAAIEK 209

Query:   178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
                G P+ DE+  +++K A  LR+QQ EV+S K  +  EI + K+  +  ++  +    E
Sbjct:   210 STSGIPFTDEMHRKIQKEAETLREQQKEVES-KDLAAAEIEKWKKHYQTEHDKNMNMMAE 268

Query:   237 MVESKLKETTTRLEQQL 253
             M+ ++L+E + R E+ L
Sbjct:   269 MLGNRLREDSERQEKML 285

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 97/287 (33%), Positives = 164/287 (57%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             ++TGN++LG + FKSK  +   T  CEM R  ++DG ++NVIDTP +    DS    + +
Sbjct:    19 SSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGLC---DSFVPGDDI 75

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
             S EI+ C+ MA++GIHAVL+V S R R S+EE + +++L+ +FG ++ DY IVVFT G  
Sbjct:    76 SNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDYCIVVFTGGDD 135

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
                            CP+ L ++L+LC  R+VLFDNK+KD  K+ EQ             
Sbjct:   136 LEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQLLARVENVGE 195

Query:   178 -NGGQPYIDEIFAELKKRAT-KLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSI 235
               GG PY  ++  ++K+    +LR+++  ++S K  ++ E++E+++ +        K  +
Sbjct:   196 QTGGIPYTYQLHRKIKEENDERLREEERVIES-KNRAEAELAEMQQNLLME-----KEKL 249

Query:   236 EMVESKLKETTTRLE--QQLAEEHLARLKAE---GAAQLAQIKSNEE 277
             +M E+K K+   + E  ++L E+  A+ +AE    A  + +++  EE
Sbjct:   250 QMEEAKNKQLIAQAEANEKLMEQERAKNRAETELAAVMVEKLQMEEE 296

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 86/258 (33%), Positives = 152/258 (58%)

Query:    11 TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
             + TGNS++G+  F S+  ++  TKTC+  + +   G  +NVIDTP    LFD S   EF+
Sbjct:    27 SATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINVIDTPG---LFDLSVSAEFI 83

Query:    71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
             SKEI+ C+ +A+ G+H V++V SVR R ++EE   + +L+ LFG ++ DY+IV+FT G  
Sbjct:    84 SKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQVLFGNEILDYLIVLFTGGDE 143

Query:   131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQ------------- 177
                            CP  LK +L LCD+R+V+F+N TKD  K+ EQ             
Sbjct:   144 LEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDKHKKVEQVQQFLALVAKVEE 203

Query:   178 -NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIE 236
              N G+P+  +++ E+K+    L+ Q+  V++     + E++++K++++  ++ ++ +  +
Sbjct:   204 RNEGKPFRGKMYLEIKEETEWLKKQKKAVEA-SNLGEAELAKMKKELQMEHDTRMSQMED 262

Query:   237 MVESKLKETTTRLEQQLA 254
             MV++ LKET+   E+ ++
Sbjct:   263 MVKNMLKETSAAHERMVS 280

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021940001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (340 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	307
pfam04548	211	pfam04548, AIG1, AIG1 family	1e-70
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	1e-66

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  217 bits (554), Expect = 1e-70
 Identities = 93/203 (45%), Positives = 136/203 (66%), Gaps = 20/203 (9%)

Query: 13  TGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSK 72
           TGNSILGR+AF+SK+ +   TKTC++      DG+++NVIDTP    LFD S   +F+SK
Sbjct: 16  TGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPG---LFDLSVSNDFISK 71

Query: 73  EIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE 132
           EI++C+ +A+ G HAVL+V S+  RF+EEE  A+ +L+ LFG K+ DYMIVVFTR D+LE
Sbjct: 72  EIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLE 130

Query: 133 DNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRT-------------EQNG 179
           D+   L+DYL   CP+ LKE+L+ C  R VLF+NK     K               ++NG
Sbjct: 131 DDS--LDDYLSDGCPEFLKEVLRECGGRYVLFNNKADGEEKEEQVQQLLALVEAIVKENG 188

Query: 180 GQPYIDEIFAELKKRATKLRDQQ 202
           G+PY ++++ ++K+   +LR++Q
Sbjct: 189 GKPYTNDLYEKIKEEGERLREKQ 211

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  207 bits (528), Expect = 1e-66
 Identities = 83/196 (42%), Positives = 123/196 (62%), Gaps = 21/196 (10%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGN+ILGR+ F+SK+ +S  TKTC+ +  +  DG+ VNVIDTP    LFD+S   E +
Sbjct: 14  SATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTP---GLFDTSVSPEQL 69

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
           SKEI++C+ ++  G HA L+V  +  RF+EEE  A+  L+ LFG+KV D+ IV+FTRGD+
Sbjct: 70  SKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDHTIVLFTRGDD 128

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRT-------------EQ 177
           LE    +LEDYL  +  + LK +L+ C  R V F+NK K   +                +
Sbjct: 129 LE--GGSLEDYLE-DSCEALKRLLEKCGGRYVAFNNKAKGREQEQQVKELLAKVEEMVRE 185

Query: 178 NGGQPYIDEIFAELKK 193
           NGG+PY +E++ E ++
Sbjct: 186 NGGKPYTNEMYEEAEE 201

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	307
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	100.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	100.0
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.97
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.96
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.89
COG1159	298	Era GTPase [General function prediction only]	99.64
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.61
PRK00089	292	era GTPase Era; Reviewed	99.56
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.56
COG1160	444	Predicted GTPases [General function prediction onl	99.55
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.52
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.5
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.46
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.46
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.45
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.45
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.44
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.43
PRK00093	435	GTP-binding protein Der; Reviewed	99.41
PRK15494	339	era GTPase Era; Provisional	99.39
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.39
COG1160	444	Predicted GTPases [General function prediction onl	99.38
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.37
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.36
PRK00093	435	GTP-binding protein Der; Reviewed	99.36
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.33
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.31
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.3
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.29
PRK03003	472	GTP-binding protein Der; Reviewed	99.28
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.28
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.25
COG0218	200	Predicted GTPase [General function prediction only	99.25
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.25
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.24
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.22
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.22
COG0486	454	ThdF Predicted GTPase [General function prediction	99.2
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.2
PRK12298	390	obgE GTPase CgtA; Reviewed	99.19
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.19
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.19
COG3596	296	Predicted GTPase [General function prediction only	99.19
cd00881	189	GTP_translation_factor GTP translation factor fami	99.18
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.18
PRK03003	472	GTP-binding protein Der; Reviewed	99.17
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.16
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.16
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.15
PRK11058	426	GTPase HflX; Provisional	99.12
COG1084	346	Predicted GTPase [General function prediction only	99.11
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.11
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.1
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.1
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.09
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.09
CHL00071	409	tufA elongation factor Tu	99.08
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.04
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.03
PRK12299	335	obgE GTPase CgtA; Reviewed	99.02
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.02
PRK12297	424	obgE GTPase CgtA; Reviewed	98.96
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.95
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.95
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.95
PRK04213	201	GTP-binding protein; Provisional	98.94
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.93
PRK12735	396	elongation factor Tu; Reviewed	98.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.92
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.92
PRK00049	396	elongation factor Tu; Reviewed	98.91
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.91
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.91
PLN03127	447	Elongation factor Tu; Provisional	98.9
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.9
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.9
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.9
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.9
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.89
PRK12317	425	elongation factor 1-alpha; Reviewed	98.89
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.89
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.89
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.89
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.88
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.88
PRK12296	500	obgE GTPase CgtA; Reviewed	98.87
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.87
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.86
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.86
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.86
PRK12736	394	elongation factor Tu; Reviewed	98.85
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.85
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.85
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.85
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.85
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.85
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.84
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.84
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.84
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.84
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.84
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.83
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.83
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.83
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.83
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.82
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.82
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.81
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.81
PLN03126	478	Elongation factor Tu; Provisional	98.8
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.8
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.8
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.8
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.8
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.79
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.78
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.77
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.77
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.77
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.76
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.75
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.75
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.74
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.73
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.73
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.73
PLN03118	211	Rab family protein; Provisional	98.73
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.72
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.72
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.72
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.72
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.72
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.72
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.72
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.72
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.71
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.71
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.71
PRK00007	693	elongation factor G; Reviewed	98.71
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.7
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.7
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.69
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.69
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.67
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.66
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.66
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.66
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.66
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.66
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.66
PRK09866	741	hypothetical protein; Provisional	98.65
PRK12739	691	elongation factor G; Reviewed	98.65
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.65
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.65
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.63
PTZ00133	182	ADP-ribosylation factor; Provisional	98.63
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.63
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.63
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.62
PTZ00258	390	GTP-binding protein; Provisional	98.62
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.62
cd04105	203	SR_beta Signal recognition particle receptor, beta	98.61
PRK09601	364	GTP-binding protein YchF; Reviewed	98.6
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.59
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.59
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.57
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.57
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.56
PRK05306	787	infB translation initiation factor IF-2; Validated	98.56
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.56
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.55
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.55
COG2262	411	HflX GTPases [General function prediction only]	98.53
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.53
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.53
PLN03110	216	Rab GTPase; Provisional	98.53
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.52
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.52
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.52
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.51
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.51
PTZ00369	189	Ras-like protein; Provisional	98.49
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.48
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.48
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.48
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.48
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.48
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.47
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.47
CHL00189	742	infB translation initiation factor 2; Provisional	98.46
PLN00223	181	ADP-ribosylation factor; Provisional	98.46
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.45
PRK12740	668	elongation factor G; Reviewed	98.45
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.44
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.44
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.44
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.43
PLN03108	210	Rab family protein; Provisional	98.41
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.39
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.39
PRK12288	347	GTPase RsgA; Reviewed	98.38
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.35
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.35
PRK13351	687	elongation factor G; Reviewed	98.34
PRK10218	607	GTP-binding protein; Provisional	98.33
PTZ00416	836	elongation factor 2; Provisional	98.33
PTZ00141	446	elongation factor 1- alpha; Provisional	98.32
PRK12289	352	GTPase RsgA; Reviewed	98.32
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.32
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.31
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.29
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.29
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.28
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.27
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.27
COG1161	322	Predicted GTPases [General function prediction onl	98.26
PRK04004	586	translation initiation factor IF-2; Validated	98.26
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.25
PRK00098	298	GTPase RsgA; Reviewed	98.24
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.24
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	98.24
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.23
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.23
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.22
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.22
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.21
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.2
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.18
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.18
COG1100	219	GTPase SAR1 and related small G proteins [General	98.17
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.17
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.17
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.16
PRK09602	396	translation-associated GTPase; Reviewed	98.13
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.13
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.12
COG1162	301	Predicted GTPases [General function prediction onl	98.12
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.11
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.09
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.07
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.06
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.02
PRK05433	600	GTP-binding protein LepA; Provisional	98.0
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.99
PRK13768	253	GTPase; Provisional	97.98
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.94
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.94
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.91
PRK13796	365	GTPase YqeH; Provisional	97.91
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.91
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.85
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.85
PRK07560	731	elongation factor EF-2; Reviewed	97.83
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.81
PLN00043	447	elongation factor 1-alpha; Provisional	97.81
COG1163	365	DRG Predicted GTPase [General function prediction	97.75
PRK10416	318	signal recognition particle-docking protein FtsY;	97.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	97.74
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.7
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.7
COG0536	369	Obg Predicted GTPase [General function prediction	97.67
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.65
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.64
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	97.64
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.62
KOG2486	320	consensus Predicted GTPase [General function predi	97.61
PRK02224	880	chromosome segregation protein; Provisional	97.61
PF09439	181	SRPRB: Signal recognition particle receptor beta s	97.61
KOG0395	196	consensus Ras-related GTPase [General function pre	97.6
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.59
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.57
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.55
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.55
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.54
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.54
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	97.54
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.53
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.46
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.45
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	97.4
PLN00023	334	GTP-binding protein; Provisional	97.4
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.34
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.32
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	97.32
PRK14974	336	cell division protein FtsY; Provisional	97.28
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.22
PRK01889	356	GTPase RsgA; Reviewed	97.21
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.2
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.15
KOG1145	683	consensus Mitochondrial translation initiation fac	97.13
cd03112	158	CobW_like The function of this protein family is u	97.13
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.12
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	97.09
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.03
PRK03918	880	chromosome segregation protein; Provisional	97.02
PRK10867	433	signal recognition particle protein; Provisional	97.01
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.0
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.99
COG2229	187	Predicted GTPase [General function prediction only	96.93
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	96.92
PRK14845	1049	translation initiation factor IF-2; Provisional	96.91
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.91
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.83
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.82
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.81
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.79
cd03246	173	ABCC_Protease_Secretion This family represents the	96.78
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.74
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.72
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.7
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.67
PF05879	742	RHD3: Root hair defective 3 GTP-binding protein (R	96.64
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.63
TIGR00959	428	ffh signal recognition particle protein. This mode	96.6
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.6
KOG0410	410	consensus Predicted GTP binding protein [General f	96.56
PHA02562	562	46 endonuclease subunit; Provisional	96.56
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	96.53
PF00004	132	AAA: ATPase family associated with various cellula	96.45
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.43
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	96.42
COG0012	372	Predicted GTPase, probable translation factor [Tra	96.4
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.39
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.37
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.32
PRK00409	782	recombination and DNA strand exchange inhibitor pr	96.31
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	96.28
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	96.26
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.26
PRK01156	895	chromosome segregation protein; Provisional	96.25
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.2
KOG2484	435	consensus GTPase [General function prediction only	96.16
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.14
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.11
PRK10865	857	protein disaggregation chaperone; Provisional	96.1
COG3276	447	SelB Selenocysteine-specific translation elongatio	96.08
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	96.05
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.02
KOG0462	650	consensus Elongation factor-type GTP-binding prote	95.98
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	95.95
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.94
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.89
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	95.89
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	95.89
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.85
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	95.84
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.74
COG1217	603	TypA Predicted membrane GTPase involved in stress	95.68
cd03111	106	CpaE_like This protein family consists of proteins	95.67
KOG0090	238	consensus Signal recognition particle receptor, be	95.65
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	95.61
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	95.6
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.52
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.5
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	95.49
COG4988	559	CydD ABC-type transport system involved in cytochr	95.48
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.44
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	95.39
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	95.36
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.31
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	95.25
COG1341	398	Predicted GTPase or GTP-binding protein [General f	95.2
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	95.19
PRK13546	264	teichoic acids export protein ATP-binding subunit;	95.16
KOG2423	572	consensus Nucleolar GTPase [General function predi	95.1
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	95.08
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	95.08
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	95.01
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	95.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	94.99
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	94.98
PRK00300	205	gmk guanylate kinase; Provisional	94.94
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	94.92
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	94.88
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.72
KOG0054	1381	consensus Multidrug resistance-associated protein/	94.72
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	94.67
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.65
COG3523	1188	IcmF Type VI protein secretion system component Va	94.61
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	94.59
cd02036	179	MinD Bacterial cell division requires the formatio	94.57
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	94.56
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.5
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	94.5
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	94.5
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	94.4
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	94.38
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	94.37
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	94.37
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	94.36
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	94.34
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	94.3
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	94.24
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	94.21
cd03239	178	ABC_SMC_head The structural maintenance of chromos	94.16
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	94.14
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	94.09
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	94.04
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	94.03
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.01
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	94.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	93.96
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	93.93
PRK14737	186	gmk guanylate kinase; Provisional	93.91
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	93.89
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	93.87
smart00382	148	AAA ATPases associated with a variety of cellular	93.82
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	93.78
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	93.77
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	93.71
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	93.69
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	93.66
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.64
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.62
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.61
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	93.6
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	93.58
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.56
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	93.52
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	93.48
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	93.47
PLN03232	1495	ABC transporter C family member; Provisional	93.46
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.45
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	93.44
PLN03130	1622	ABC transporter C family member; Provisional	93.43
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	93.42
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	93.42
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.41
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	93.39
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	93.37
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	93.36
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.33
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	93.31
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	93.31
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.3
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	93.29
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.29
PTZ00099	176	rab6; Provisional	93.23
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	93.22
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.18
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	93.16
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	93.15
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	93.15
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	93.14
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	93.12
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	93.09
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	93.09
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	93.07
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	93.07
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.05
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.05
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	93.04
PRK13695	174	putative NTPase; Provisional	93.03
PTZ00243	1560	ABC transporter; Provisional	93.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	92.97
KOG0394	210	consensus Ras-related GTPase [General function pre	92.95
cd03269	210	ABC_putative_ATPase This subfamily is involved in	92.95
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	92.94
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	92.94
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	92.93
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	92.93
TIGR00235	207	udk uridine kinase. Model contains a number of lon	92.92
KOG0467	887	consensus Translation elongation factor 2/ribosome	92.89
PHA02518	211	ParA-like protein; Provisional	92.89
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	92.88
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	92.86
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	92.84
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	92.82
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	92.8
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	92.78
PRK07940	394	DNA polymerase III subunit delta'; Validated	92.77
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	92.75
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	92.75
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	92.74
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	92.71
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	92.67
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	92.66
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	92.65
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	92.64
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	92.64
PRK08233	182	hypothetical protein; Provisional	92.63
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	92.63
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	92.62
PRK13851	344	type IV secretion system protein VirB11; Provision	92.61
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	92.61
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	92.6
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	92.6
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	92.6
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	92.59
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	92.58
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	92.57

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=100.00  E-value=3.4e-50  Score=362.28  Aligned_cols=184  Identities=40%  Similarity=0.672  Sum_probs=157.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||+||+|||+++|.++.++.++|..|+.+.+.+ +|+.|+|||||   ||+|+..+++++.++|.+|+.++.
T Consensus         6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTP---Gl~d~~~~~~~~~~~i~~~l~~~~   81 (212)
T PF04548_consen    6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTP---GLFDSDGSDEEIIREIKRCLSLCS   81 (212)
T ss_dssp             ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE-----SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCC---CCCCCcccHHHHHHHHHHHHHhcc
Confidence            59999999999999999999999989999999999999999 99999999999   999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV  162 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~  162 (307)
                      |||||||||++++ |||.+++.+++.+.++||+++|+|+|||||++|.+.+  .++++|+.+..|..|++|+++||+|||
T Consensus        82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            9999999999999 9999999999999999999999999999999999988  569999985356789999999999999


Q ss_pred             EEcCCCCch---hhHHH-----------HcCCCCCChHHHHHHHH
Q 044972          163 LFDNKTKDA---AKRTE-----------QNGGQPYIDEIFAELKK  193 (307)
Q Consensus       163 ~fnNk~~~~---~~~~~-----------~n~g~~yt~~~~~~~e~  193 (307)
                      +|||++.+.   ..|+.           +|+|.|||++||+++++
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~  203 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEE  203 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHH
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence            999993221   22222           99999999999999995

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=100.00  E-value=2.2e-43  Score=312.56  Aligned_cols=179  Identities=46%  Similarity=0.776  Sum_probs=165.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|+|||||||++|+|+|.+.|.+..+..++|+.|+.....+ +|++|+|||||   ||+|+..+.+.+..++.+|+..+
T Consensus         5 lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTP---G~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           5 LVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTP---GLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             EECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECc---CCCCccCChHHHHHHHHHHHHhc
Confidence            379999999999999999999998888889999999999999 99999999999   99998877888999999999999


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR  161 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~  161 (307)
                      .+|||+||||++++ +||+++..+++.++++||+++|+|+|||||++|++.+  .++++|+.. .+..|+.++++||+||
T Consensus        81 ~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r~  156 (196)
T cd01852          81 APGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGRY  156 (196)
T ss_pred             CCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCeE
Confidence            99999999999998 7999999999999999999999999999999999987  699999997 6789999999999999


Q ss_pred             EEEcCCCC--chhhHHH-----------HcCCCCCChHHH
Q 044972          162 VLFDNKTK--DAAKRTE-----------QNGGQPYIDEIF  188 (307)
Q Consensus       162 ~~fnNk~~--~~~~~~~-----------~n~g~~yt~~~~  188 (307)
                      |+|||+.+  ....|+.           +|+|.||+++||
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~  196 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTNDMY  196 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            99999983  3334443           899999999886

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.97  E-value=1.8e-30  Score=264.45  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=130.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH--H
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI--G   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv--~   79 (307)
                      .+|+||+|||||+|+|+|+++|.+.. ..+.|+.+....+.+ +|+.|+|||||   ||+|+..+. ....+|.+|+  .
T Consensus       123 LVGKTGVGKSSLINSILGekvf~vss-~~~~TTr~~ei~~~i-dG~~L~VIDTP---GL~dt~~dq-~~neeILk~Ik~~  196 (763)
T TIGR00993       123 VLGKSGVGKSATINSIFGEVKFSTDA-FGMGTTSVQEIEGLV-QGVKIRVIDTP---GLKSSASDQ-SKNEKILSSVKKF  196 (763)
T ss_pred             EECCCCCCHHHHHHHHhccccccccC-CCCCceEEEEEEEEE-CCceEEEEECC---CCCccccch-HHHHHHHHHHHHH
Confidence            36999999999999999999998754 335566676667778 99999999999   999986543 3444555555  2


Q ss_pred             hcCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCc-----ccHHHhcCCCCCchHHHH
Q 044972           80 MAKDGIHAVLIVFSVRN-RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDND-----ETLEDYLGPECPKPLKEI  153 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~-RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~-----~sie~yl~~~~~~~Lk~L  153 (307)
                      +..+|||+||||++++. +.+.++..+++.|+++||+++|+|+||||||||.++++|     .++++|+.. ++..||.+
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq~~  275 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQQA  275 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHHHH
Confidence            34568999999999972 233478899999999999999999999999999997432     689999997 89999999


Q ss_pred             HHhcCCeEEEEc
Q 044972          154 LQLCDNRRVLFD  165 (307)
Q Consensus       154 i~~Cg~R~~~fn  165 (307)
                      |..|.||+++||
T Consensus       276 Irq~~g~~~l~n  287 (763)
T TIGR00993       276 IGQAVGDLRLMN  287 (763)
T ss_pred             HHHhcCcceecc
Confidence            999999999999

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.96  E-value=2.3e-29  Score=238.99  Aligned_cols=150  Identities=20%  Similarity=0.222  Sum_probs=123.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.||+|||||+|+|+|+++|.+.. ..+.|..+......+ +|+.|+|||||   ||+|+...++.. .++.+|+. .
T Consensus        43 lvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTP---GL~d~~~~~e~~-~~~ik~~l-~  115 (313)
T TIGR00991        43 VMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTP---GLIEGGYINDQA-VNIIKRFL-L  115 (313)
T ss_pred             EECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECC---CCCchHHHHHHH-HHHHHHHh-h
Confidence            47999999999999999999865432 224444444455667 99999999999   999976544544 35556653 4


Q ss_pred             CCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           82 KDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        82 ~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      .+|||+||||++++ .|+++.|..+++.|+.+||+++|+|+||||||+|.+..++.++++|+.+ +++.|+++|+.+-+
T Consensus       116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~i~~~~~  193 (313)
T TIGR00991       116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRVIHSGAG  193 (313)
T ss_pred             cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHHHHHHhc
Confidence            56999999998876 4999999999999999999999999999999999987666899999997 88999999998754

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.89  E-value=5.8e-23  Score=190.39  Aligned_cols=125  Identities=22%  Similarity=0.225  Sum_probs=105.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc---CHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA---DFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~---~~~~i~~eI~kcv~   79 (307)
                      +|+||||||||+|+|+|..++.+. ...+.|..++...+.+ +|..|+|||||   ||.|+..   .+..+...|.+++ 
T Consensus        37 vG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTP---Gl~~~~~~~~~~~~~~~~I~~~l-  110 (249)
T cd01853          37 LGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTP---GLLESVMDQRVNRKILSSIKRYL-  110 (249)
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECC---CcCcchhhHHHHHHHHHHHHHHH-
Confidence            799999999999999999988764 3456788888888888 99999999999   9998743   2334555555543 


Q ss_pred             hcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN  134 (307)
Q Consensus        80 ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~  134 (307)
                       ...++|++|+|.+++ .|++..|..+++.|.+.||.++|+|+||||||+|.+.++
T Consensus       111 -~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         111 -KKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             -hccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence             345799999999887 489999999999999999999999999999999998664

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1159 Era GTPase [General function prediction only]

Probab=99.64  E-value=2.6e-15  Score=141.38  Aligned_cols=117  Identities=14%  Similarity=0.135  Sum_probs=99.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCC-ceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDT-KTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT-~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|+|||||||+.|.|+|.++..+  |..+.| +.-..+..+. +..++++||||   ||+.+   ...+.+-+.+++..+
T Consensus        12 iGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~-~~~QiIfvDTP---Gih~p---k~~l~~~m~~~a~~s   82 (298)
T COG1159          12 IGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTT-DNAQIIFVDTP---GIHKP---KHALGELMNKAARSA   82 (298)
T ss_pred             EcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEc-CCceEEEEeCC---CCCCc---chHHHHHHHHHHHHH
Confidence            79999999999999999998875  345544 4456666676 88999999999   99976   356777888999999


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..++|++|||+++...++..|...++.++.     .....|+++++.|...+
T Consensus        83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~  129 (298)
T COG1159          83 LKDVDLILFVVDADEGWGPGDEFILEQLKK-----TKTPVILVVNKIDKVKP  129 (298)
T ss_pred             hccCcEEEEEEeccccCCccHHHHHHHHhh-----cCCCeEEEEEccccCCc
Confidence            999999999999985599999999999987     35689999999998876

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.61  E-value=8.9e-15  Score=118.49  Aligned_cols=112  Identities=17%  Similarity=0.146  Sum_probs=82.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|+|.+.+..+.. .+.|+.+......+ ++..+.+||||   ||.++....... ..+.+.+... 
T Consensus         5 iG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~-~~~~~~~vDtp---G~~~~~~~~~~~-~~~~~~~~~~-   77 (116)
T PF01926_consen    5 IGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEY-NNKKFILVDTP---GINDGESQDNDG-KEIRKFLEQI-   77 (116)
T ss_dssp             EESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEE-TTEEEEEEESS---SCSSSSHHHHHH-HHHHHHHHHH-
T ss_pred             ECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeee-ceeeEEEEeCC---CCcccchhhHHH-HHHHHHHHHH-
Confidence            59999999999999999876665443 46777776667778 99999999999   999875433322 2333333333 


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEec
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTR  127 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~  127 (307)
                      ...|++++|+++..+.++.+...++.++      ..+++++|+|+
T Consensus        78 ~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence            6679999999987445556666667662      57889999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.56  E-value=8.1e-14  Score=130.56  Aligned_cols=116  Identities=15%  Similarity=0.144  Sum_probs=86.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCc-eeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTK-TCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~-~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|+|||||||++|+|+|.+...+.  ..+.|+ ......... ++.++++||||   |++++.   ..+.+.+...+..+
T Consensus        11 iG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~-~~~qi~~iDTP---G~~~~~---~~l~~~~~~~~~~~   81 (292)
T PRK00089         11 VGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTE-DDAQIIFVDTP---GIHKPK---RALNRAMNKAAWSS   81 (292)
T ss_pred             ECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEc-CCceEEEEECC---CCCCch---hHHHHHHHHHHHHH
Confidence            699999999999999999876543  333333 333333334 56899999999   998754   33445555556666


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .+++|++|||+++...++..+...+..+..     ...+++||+|+.|.+.
T Consensus        82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~  127 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGPGDEFILEKLKK-----VKTPVILVLNKIDLVK  127 (292)
T ss_pred             HhcCCEEEEEEeCCCCCChhHHHHHHHHhh-----cCCCEEEEEECCcCCC
Confidence            789999999999985688888777777663     2468999999999874

>cd01894 EngA1 EngA1 subfamily

Probab=99.56  E-value=6e-14  Score=116.58  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=88.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||++|.|+|.+..... ...+.|.........+ +|..+.|||||   |+.+...   .+.+.+.+.....
T Consensus         2 l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~Dtp---G~~~~~~---~~~~~~~~~~~~~   73 (157)
T cd01894           2 IVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTG---GIEPDDE---GISKEIREQAELA   73 (157)
T ss_pred             ccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECC---CCCCchh---HHHHHHHHHHHHH
Confidence            5899999999999999998643322 2335666677777778 89999999999   9876432   3444454444445


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|++++|++....++..+...+..++..     ..++++|+|+.|....
T Consensus        74 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~  120 (157)
T cd01894          74 IEEADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKE  120 (157)
T ss_pred             HHhCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCCh
Confidence            5779999999998767777777666666542     3789999999998654

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.55  E-value=4.1e-14  Score=139.66  Aligned_cols=119  Identities=18%  Similarity=0.096  Sum_probs=103.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||++|.|+|++...+. ...++|++-..+.+.| .|+.+.||||+   ||.+.+  ++.+.+.|..-...+.
T Consensus         9 VGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTg---Gl~~~~--~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           9 VGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTG---GLDDGD--EDELQELIREQALIAI   81 (444)
T ss_pred             ECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECC---CCCcCC--chHHHHHHHHHHHHHH
Confidence            799999999999999999987764 3568999999999999 99999999999   998633  3567777777777777


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...|++|||++....+|+.|..+.++|+.     ..+++|+|.++.|....
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~  127 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILRR-----SKKPVILVVNKIDNLKA  127 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEEcccCchh
Confidence            88999999999887799999999999985     47899999999998743

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.52  E-value=1e-13  Score=120.52  Aligned_cols=140  Identities=16%  Similarity=0.120  Sum_probs=94.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CH-HHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DF-EFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~-~~i~~eI~kcv~l   80 (307)
                      +|.|||||||++|.|+|.++..+.  ..++|..+..+...+ ++..+.+||||   |+++... +. +.+..+.     +
T Consensus         6 vG~PNvGKStLfN~Ltg~~~~v~n--~pG~Tv~~~~g~~~~-~~~~~~lvDlP---G~ysl~~~s~ee~v~~~~-----l   74 (156)
T PF02421_consen    6 VGNPNVGKSTLFNALTGAKQKVGN--WPGTTVEKKEGIFKL-GDQQVELVDLP---GIYSLSSKSEEERVARDY-----L   74 (156)
T ss_dssp             EESTTSSHHHHHHHHHTTSEEEEE--STTSSSEEEEEEEEE-TTEEEEEEE-------SSSSSSSHHHHHHHHH-----H
T ss_pred             ECCCCCCHHHHHHHHHCCCceecC--CCCCCeeeeeEEEEe-cCceEEEEECC---CcccCCCCCcHHHHHHHH-----H
Confidence            699999999999999999955543  457888888888888 99999999999   8887542 32 3233222     2


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR  160 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R  160 (307)
                      ....||++++|+++. .+ +.+...+..+.++     -..+||++|+.|.....+..+          ....|-+..|-.
T Consensus        75 ~~~~~D~ii~VvDa~-~l-~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~~i----------d~~~Ls~~Lg~p  137 (156)
T PF02421_consen   75 LSEKPDLIIVVVDAT-NL-ERNLYLTLQLLEL-----GIPVVVVLNKMDEAERKGIEI----------DAEKLSERLGVP  137 (156)
T ss_dssp             HHTSSSEEEEEEEGG-GH-HHHHHHHHHHHHT-----TSSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred             hhcCCCEEEEECCCC-CH-HHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcCCEE----------CHHHHHHHhCCC
Confidence            246799999999987 54 4445555555553     478999999999876532222          123444444667


Q ss_pred             EEEEcCCCCc
Q 044972          161 RVLFDNKTKD  170 (307)
Q Consensus       161 ~~~fnNk~~~  170 (307)
                      ++.++-+...
T Consensus       138 vi~~sa~~~~  147 (156)
T PF02421_consen  138 VIPVSARTGE  147 (156)
T ss_dssp             EEEEBTTTTB
T ss_pred             EEEEEeCCCc
Confidence            7777776544

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04163 Era Era subfamily

Probab=99.50  E-value=4e-13  Score=111.38  Aligned_cols=117  Identities=16%  Similarity=0.122  Sum_probs=81.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||++|+|+|.+....... ...|+.+....... .+..+.+||||   |+.++......   .+.+......
T Consensus         9 ~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~liDtp---G~~~~~~~~~~---~~~~~~~~~~   80 (168)
T cd04163           9 VGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIYTD-DDAQIIFVDTP---GIHKPKKKLGE---RMVKAAWSAL   80 (168)
T ss_pred             ECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEEEc-CCeEEEEEECC---CCCcchHHHHH---HHHHHHHHHH
Confidence            69999999999999999876543322 23344444444444 66899999999   99876433222   1333344456


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      +++|++++|+++...++..+...+..+...     -...+||+|+.|...
T Consensus        81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~  125 (168)
T cd04163          81 KDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK  125 (168)
T ss_pred             HhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence            789999999999855677776666666542     357899999999763

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.46  E-value=9.3e-13  Score=129.42  Aligned_cols=119  Identities=17%  Similarity=0.110  Sum_probs=94.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|+|||||||++|.|+|.+...+. ...++|+.+......| +|+.+.|||||   |+.+.   ...+...+......+
T Consensus         4 ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTp---G~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         4 IVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTG---GIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             EECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECC---CCCCc---chhHHHHHHHHHHHH
Confidence            4799999999999999998743322 2347888999999999 99999999999   98542   234556666655566


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..++|++|||++....++..+.....++++     ..+++|+|.|+.|....
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-----~~~piilVvNK~D~~~~  122 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRK-----SGKPVILVANKIDGKKE  122 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----hCCCEEEEEECccCCcc
Confidence            678999999999877899999888888876     25789999999997654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.46  E-value=1.6e-12  Score=107.71  Aligned_cols=117  Identities=20%  Similarity=0.170  Sum_probs=82.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      ..|++|+||||++|+|+|....... ...+.|..+......+ ++..++++|||   |+.+......   .+...-...+
T Consensus         6 l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~Dtp---G~~~~~~~~~---~~~~~~~~~~   77 (157)
T cd04164           6 IVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTA---GIRETEDEIE---KIGIERAREA   77 (157)
T ss_pred             EECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECC---CcCCCcchHH---HHHHHHHHHH
Confidence            3699999999999999998743222 2335566666666677 89999999999   9887543221   1111112233


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+|++++|+++..+.+..+...+..       ....+++||+|+.|....
T Consensus        78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~  122 (157)
T cd04164          78 IEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPD  122 (157)
T ss_pred             HhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence            458999999999986777777665544       235789999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00436 era GTP-binding protein Era

Probab=99.45  E-value=1.1e-12  Score=122.24  Aligned_cols=117  Identities=13%  Similarity=0.095  Sum_probs=81.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||++|+|+|.+...+.. ....|+.+..+.... ++.+++++|||   |+.+..   ..+.+.+.+.+..+.
T Consensus         6 iG~pnvGKSTLln~L~~~~~~~vs~-~~~TTr~~i~~i~~~-~~~qii~vDTP---G~~~~~---~~l~~~~~~~~~~~l   77 (270)
T TIGR00436         6 LGRPNVGKSTLLNQLHGQKISITSP-KAQTTRNRISGIHTT-GASQIIFIDTP---GFHEKK---HSLNRLMMKEARSAI   77 (270)
T ss_pred             ECCCCCCHHHHHHHHhCCcEeecCC-CCCcccCcEEEEEEc-CCcEEEEEECc---CCCCCc---chHHHHHHHHHHHHH
Confidence            6999999999999999998654322 123455555555455 67789999999   998753   223344455455556


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .++|++|+|+++....+ .+...+..+..     .-.++++|+|+.|....
T Consensus        78 ~~aDvvl~VvD~~~~~~-~~~~i~~~l~~-----~~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        78 GGVDLILFVVDSDQWNG-DGEFVLTKLQN-----LKRPVVLTRNKLDNKFK  122 (270)
T ss_pred             hhCCEEEEEEECCCCCc-hHHHHHHHHHh-----cCCCEEEEEECeeCCCH
Confidence            78999999999874333 33444555543     24679999999998643

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.45  E-value=4.1e-12  Score=110.47  Aligned_cols=145  Identities=16%  Similarity=0.176  Sum_probs=90.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH---HHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF---VSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~---i~~eI~kcv   78 (307)
                      +|.+||||||++|.|+|.. ..... ...+.|..+...  .+ + ..++++|||   |+.++..+...   ....+...+
T Consensus        24 vG~~~~GKStlin~l~~~~~~~~~~-~~~~~t~~~~~~--~~-~-~~~~liDtp---G~~~~~~~~~~~~~~~~~~~~~l   95 (179)
T TIGR03598        24 AGRSNVGKSSLINALTNRKKLARTS-KTPGRTQLINFF--EV-N-DGFRLVDLP---GYGYAKVSKEEKEKWQKLIEEYL   95 (179)
T ss_pred             EcCCCCCHHHHHHHHhCCCCccccc-CCCCcceEEEEE--Ee-C-CcEEEEeCC---CCccccCChhHHHHHHHHHHHHH
Confidence            6999999999999999986 22221 122345555432  33 3 379999999   98765433221   222222222


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                       ....+.|++|+|+++..+++..+...+..+..     ...+++||+|++|.+..  ..++..+.     .+++.+..-+
T Consensus        96 -~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~--~~~~~~~~-----~i~~~l~~~~  162 (179)
T TIGR03598        96 -EKRENLKGVVLLMDIRHPLKELDLEMLEWLRE-----RGIPVLIVLTKADKLKK--SELNKQLK-----KIKKALKKDA  162 (179)
T ss_pred             -HhChhhcEEEEEecCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCH--HHHHHHHH-----HHHHHHhhcc
Confidence             23456899999999887899988877666543     24678999999998754  33332222     2444454433


Q ss_pred             --CeEEEEcCCC
Q 044972          159 --NRRVLFDNKT  168 (307)
Q Consensus       159 --~R~~~fnNk~  168 (307)
                        .+++.+..++
T Consensus       163 ~~~~v~~~Sa~~  174 (179)
T TIGR03598       163 DDPSVQLFSSLK  174 (179)
T ss_pred             CCCceEEEECCC
Confidence              2566666554

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01850 CDC_Septin CDC/Septin

Probab=99.44  E-value=4.1e-12  Score=119.46  Aligned_cols=150  Identities=18%  Similarity=0.162  Sum_probs=99.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEE--EEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEM--QRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVS   71 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~--~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~   71 (307)
                      ++|++|+||||++|+++|...+......      .+.|.....  ..... +|  ..++|||||   ||.|.. .+....
T Consensus         9 vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTp---Gfgd~~-~~~~~~   83 (276)
T cd01850           9 VVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTP---GFGDNI-NNSDCW   83 (276)
T ss_pred             EEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecC---Cccccc-cchhhH
Confidence            5899999999999999999877543211      123322222  23334 66  479999999   998753 222222


Q ss_pred             HHHHH----HH--------------HhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           72 KEIVK----CI--------------GMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        72 ~eI~k----cv--------------~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      +.|..    .+              ......+|++|++++.. ..+++.|...++.+..      ..++|+|+|++|.+.
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l~  157 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcCC
Confidence            22222    11              11123589999999875 3688888888877764      367999999999987


Q ss_pred             CCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCC
Q 044972          133 DNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTK  169 (307)
Q Consensus       133 ~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~  169 (307)
                      .  ..+..+..     .+++.++..+-+++-|.+...
T Consensus       158 ~--~e~~~~k~-----~i~~~l~~~~i~~~~~~~~~~  187 (276)
T cd01850         158 P--EELKEFKQ-----RIMEDIEEHNIKIYKFPEDEE  187 (276)
T ss_pred             H--HHHHHHHH-----HHHHHHHHcCCceECCCCCcc
Confidence            5  33444332     477888888888888877544

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01895 EngA2 EngA2 subfamily

Probab=99.43  E-value=2.6e-12  Score=107.77  Aligned_cols=122  Identities=16%  Similarity=0.059  Sum_probs=81.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      ++|.+|+||||++|+|+|...+.... ..+.|..+....... +|..+.+||||   |+.+.......+..-........
T Consensus         7 i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtp---G~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           7 IIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTA---GIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             EEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECC---CCccccchhccHHHHHHHHHHHH
Confidence            57999999999999999987543322 234455555555667 88999999999   98765322222211111112233


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..++|++++|+++....+......+..+..     .-.+++|++|+.|....
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDLRIAGLILE-----EGKALVIVVNKWDLVEK  128 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHHHHHHHHHh-----cCCCEEEEEeccccCCc
Confidence            468999999999876777666555444332     24689999999997654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.41  E-value=2.5e-12  Score=126.83  Aligned_cols=118  Identities=16%  Similarity=0.088  Sum_probs=93.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.|||||||++|.|+|.+...+. ...++|..+......+ +|..+.|||||   |+.+..   ..+...+......+
T Consensus         6 ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~---G~~~~~---~~~~~~~~~~~~~~   77 (435)
T PRK00093          6 IVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTG---GIEPDD---DGFEKQIREQAELA   77 (435)
T ss_pred             EECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECC---CCCCcc---hhHHHHHHHHHHHH
Confidence            4799999999999999998754333 2456888888888889 99999999999   998632   23445555555556


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ..++|++|||+++..+++..+.....++...     -.++|+|+|+.|...
T Consensus        78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~  123 (435)
T PRK00093         78 IEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD  123 (435)
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence            6789999999999878999888888887763     578999999999543

>PRK15494 era GTPase Era; Provisional

Probab=99.39  E-value=8.5e-12  Score=120.44  Aligned_cols=116  Identities=19%  Similarity=0.183  Sum_probs=85.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      .+|.|||||||++|.++|.+...+  ++.+ .|+....+...+ +|.+++++|||   |+.+...   .+...+.+....
T Consensus        57 ivG~~nvGKSTLin~l~~~k~~iv--s~k~~tTr~~~~~~~~~-~~~qi~~~DTp---G~~~~~~---~l~~~~~r~~~~  127 (339)
T PRK15494         57 IIGRPNSGKSTLLNRIIGEKLSIV--TPKVQTTRSIITGIITL-KDTQVILYDTP---GIFEPKG---SLEKAMVRCAWS  127 (339)
T ss_pred             EEcCCCCCHHHHHHHHhCCceeec--cCCCCCccCcEEEEEEe-CCeEEEEEECC---CcCCCcc---cHHHHHHHHHHH
Confidence            379999999999999999875432  2333 455555666778 89999999999   9976432   344556666666


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      +..+.|++|||++....|+..+...+..+...     -...|||+|+.|..
T Consensus       128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~  173 (339)
T PRK15494        128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIE  173 (339)
T ss_pred             HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence            67899999999998657888777666666542     24567899999964

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.39  E-value=7.3e-12  Score=104.51  Aligned_cols=115  Identities=16%  Similarity=0.072  Sum_probs=77.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.|.|...+.+.  ..+.|..+......+ +|..+.+||||   |+.+.....  ....+....... 
T Consensus         2 ~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~liDtp---G~~~~~~~~--~~~~~~~~~~~~-   72 (158)
T cd01879           2 VGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFKL-GGKEIEIVDLP---GTYSLSPYS--EDEKVARDFLLG-   72 (158)
T ss_pred             CCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEee-CCeEEEEEECC---CccccCCCC--hhHHHHHHHhcC-
Confidence            699999999999999998744332  234566676677788 88999999999   987643211  112233322222 


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +++|++|+|+++. .+.. ....+..+..     .-...|||+|+.|....
T Consensus        73 ~~~d~vi~v~d~~-~~~~-~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~  116 (158)
T cd01879          73 EKPDLIVNVVDAT-NLER-NLYLTLQLLE-----LGLPVVVALNMIDEAEK  116 (158)
T ss_pred             CCCcEEEEEeeCC-cchh-HHHHHHHHHH-----cCCCEEEEEehhhhccc
Confidence            7999999999987 4322 2222333322     24689999999997654

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.38  E-value=1.7e-12  Score=128.36  Aligned_cols=147  Identities=20%  Similarity=0.162  Sum_probs=105.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE-IVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e-I~kcv~ls   81 (307)
                      +|+||+||||++|.|||++...+.. ..+.|++......++ +|+.+.+|||-   |+--.....+.+..- +.+ ...+
T Consensus       184 iGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTA---GiRrk~ki~e~~E~~Sv~r-t~~a  257 (444)
T COG1160         184 IGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTA---GIRRKGKITESVEKYSVAR-TLKA  257 (444)
T ss_pred             EeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECC---CCCcccccccceEEEeehh-hHhH
Confidence            6999999999999999999877653 457788888888899 99999999999   986543222211110 111 0112


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC-e
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN-R  160 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~-R  160 (307)
                      ....+++|||+++...++++|...+..+.+     .-+-.|||+++||.++.+..+.++|-.     .|...+..-+. +
T Consensus       258 I~~a~vvllviDa~~~~~~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~-----~i~~~l~~l~~a~  327 (444)
T COG1160         258 IERADVVLLVIDATEGISEQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKK-----KLRRKLPFLDFAP  327 (444)
T ss_pred             HhhcCEEEEEEECCCCchHHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHH-----HHHHHhccccCCe
Confidence            245799999999987899999999999887     588899999999998864345555543     25555554443 4


Q ss_pred             EEEEc
Q 044972          161 RVLFD  165 (307)
Q Consensus       161 ~~~fn  165 (307)
                      .+.+.
T Consensus       328 i~~iS  332 (444)
T COG1160         328 IVFIS  332 (444)
T ss_pred             EEEEE
Confidence            44443

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.37  E-value=4.2e-12  Score=107.79  Aligned_cols=121  Identities=13%  Similarity=0.002  Sum_probs=76.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|++||||||++|.|+|.+.+.+.  ..+.|..+......+ + |..+.|+|||   |+.+.....+.+...+.    ..
T Consensus         2 iG~~~~GKStll~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~i~Dtp---G~~~~~~~~~~~~~~~~----~~   71 (176)
T cd01881           2 VGLPNVGKSTLLNALTNAKPKVAN--YPFTTLEPNLGVVEV-PDGARIQVADIP---GLIEGASEGRGLGNQFL----AH   71 (176)
T ss_pred             CCCCCCcHHHHHHHHhcCCccccC--CCceeecCcceEEEc-CCCCeEEEEecc---ccchhhhcCCCccHHHH----HH
Confidence            799999999999999998763322  234566666666677 7 9999999999   98643211111211221    12


Q ss_pred             CCCCeEEEEEEeCCCCC------CHHHHH-HHHHHHHhhc-----cccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRF------SEEEGA-AIHSLESLFG-----KKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~Rf------T~ee~~-~l~~i~~~FG-----~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.+++++|+++....      +..+.. ....+.....     ...-.+++||+|+.|....
T Consensus        72 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~  135 (176)
T cd01881          72 IRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA  135 (176)
T ss_pred             HhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence            35789999999986331      222222 2222222211     1245789999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd00880 Era_like Era (E

Probab=99.36  E-value=1.7e-11  Score=99.82  Aligned_cols=118  Identities=17%  Similarity=0.034  Sum_probs=76.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|+|++........ ..+.|.........+..+..+.++|||   |+.+...........+.    ...
T Consensus         2 ~G~~gsGKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dt~---g~~~~~~~~~~~~~~~~----~~~   73 (163)
T cd00880           2 FGRTNAGKSSLLNALLGQEVAIVSP-VPGTTTDPVEYVWELGPLGPVVLIDTP---GIDEAGGLGREREELAR----RVL   73 (163)
T ss_pred             cCCCCCCHHHHHHHHhCccccccCC-CCCcEECCeEEEEEecCCCcEEEEECC---CCCccccchhhHHHHHH----HHH
Confidence            6999999999999999987664332 223344444444444137899999999   99876543332212222    223


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+|++++|++.....+......+....     ....+++||+|+.|....
T Consensus        74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~-----~~~~~~ivv~nK~D~~~~  119 (163)
T cd00880          74 ERADLILFVVDADLRADEEEEKLLELLR-----ERGKPVLLVLNKIDLLPE  119 (163)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCeEEEEEEccccCCh
Confidence            5789999999987444444443122211     246779999999998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.36  E-value=1.2e-11  Score=121.93  Aligned_cols=121  Identities=17%  Similarity=0.062  Sum_probs=87.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|+|.+.+.... ..+.|..+......+ +|..+.+||||   |+.+.....+.+..........+.
T Consensus       179 vG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~---G~~~~~~~~~~~e~~~~~~~~~~~  253 (435)
T PRK00093        179 IGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTA---GIRRKGKVTEGVEKYSVIRTLKAI  253 (435)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECC---CCCCCcchhhHHHHHHHHHHHHHH
Confidence            6999999999999999988655432 335677776666667 99999999999   987644322222221111112234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +..|++|||+++...++.++...+..+..     .-..+||++|++|.+..
T Consensus       254 ~~ad~~ilViD~~~~~~~~~~~i~~~~~~-----~~~~~ivv~NK~Dl~~~  299 (435)
T PRK00093        254 ERADVVLLVIDATEGITEQDLRIAGLALE-----AGRALVIVVNKWDLVDE  299 (435)
T ss_pred             HHCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCcEEEEEECccCCCH
Confidence            57899999999987899998877766654     24689999999998743

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.33  E-value=2.3e-11  Score=103.12  Aligned_cols=120  Identities=22%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~l   80 (307)
                      .+|.+||||||++|.++|.+...+..  ...|..+......+ ++..++++|||   |+.+..... ..+...   ++..
T Consensus         5 ~~G~~~~GKssli~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~~~~~~~~~---~~~~   75 (168)
T cd01897           5 IAGYPNVGKSSLVNKLTRAKPEVAPY--PFTTKSLFVGHFDY-KYLRWQVIDTP---GLLDRPLEERNTIEMQ---AITA   75 (168)
T ss_pred             EEcCCCCCHHHHHHHHhcCCCccCCC--CCcccceeEEEEcc-CceEEEEEECC---CcCCccccCCchHHHH---HHHH
Confidence            37999999999999999987433221  23356666666667 78899999999   986533211 111111   1111


Q ss_pred             cCCCCeEEEEEEeCCCC--CC-HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNR--FS-EEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~R--fT-~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+|++|||+++..+  ++ ......+..+...++   -.++|||+|+.|....
T Consensus        76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~  128 (168)
T cd01897          76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF  128 (168)
T ss_pred             HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch
Confidence            12246899999988633  33 223445555555442   4689999999998754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.31  E-value=1.4e-10  Score=101.10  Aligned_cols=118  Identities=14%  Similarity=0.147  Sum_probs=75.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC-CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH--HHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG-SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF--VSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s-~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~--i~~eI~kcv~   79 (307)
                      +|.+||||||++|+|+|.+ |....+ ..++|..+..  ..+  +..+.|||||   |+.....+...  -...+.....
T Consensus        30 vG~~~~GKSsli~~l~~~~-~~~~~~~~~~~t~~~~~--~~~--~~~l~l~Dtp---G~~~~~~~~~~~~~~~~~~~~~~  101 (196)
T PRK00454         30 AGRSNVGKSSLINALTNRK-NLARTSKTPGRTQLINF--FEV--NDKLRLVDLP---GYGYAKVSKEEKEKWQKLIEEYL  101 (196)
T ss_pred             EcCCCCCHHHHHHHHhCCC-CcccccCCCCceeEEEE--Eec--CCeEEEeCCC---CCCCcCCCchHHHHHHHHHHHHH
Confidence            6999999999999999975 222222 2234443332  223  4789999999   98754433221  1122222222


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+++++++|++.+.+++..+..+++.+..     ...++++++|+.|.+.+
T Consensus       102 ~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~~  150 (196)
T PRK00454        102 RTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-----YGIPVLIVLTKADKLKK  150 (196)
T ss_pred             HhCccceEEEEEEecCCCCCHHHHHHHHHHHH-----cCCcEEEEEECcccCCH
Confidence            33457788999988776788877666665532     24568999999998765

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.30  E-value=1.8e-11  Score=108.87  Aligned_cols=114  Identities=16%  Similarity=0.049  Sum_probs=78.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCC---CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSE---DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~s---vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|++||||||++|+|+|......+....+   +|..+..  ...++...++++|||   |+.+.....+...+.     
T Consensus         6 i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~Dtp---G~~~~~~~~~~~l~~-----   75 (197)
T cd04104           6 VTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLP---GIGSTAFPPDDYLEE-----   75 (197)
T ss_pred             EECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCC---CCCcccCCHHHHHHH-----
Confidence            479999999999999999764432222222   2222221  111134689999999   998765554443222     


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                       ....+.|+||+|.+ + +|+..|...++.+... |    ..+++|+|++|.+..
T Consensus        76 -~~~~~~d~~l~v~~-~-~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~  122 (197)
T cd04104          76 -MKFSEYDFFIIISS-T-RFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLS  122 (197)
T ss_pred             -hCccCcCEEEEEeC-C-CCCHHHHHHHHHHHHh-C----CCEEEEEecccchhh
Confidence             23467899999854 3 8999999999988874 3    567999999998753

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.29  E-value=4.3e-11  Score=117.63  Aligned_cols=120  Identities=17%  Similarity=0.041  Sum_probs=85.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.|||||||++|+++|.+...... ..+.|..+......+ +|+.+.+||||   |+.+.....+.+..........+
T Consensus       177 ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~liDT~---G~~~~~~~~~~~e~~~~~~~~~~  251 (429)
T TIGR03594       177 IIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIPFER-NGKKYLLIDTA---GIRRKGKVTEGVEKYSVLRTLKA  251 (429)
T ss_pred             EECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEEEEE-CCcEEEEEECC---CccccccchhhHHHHHHHHHHHH
Confidence            36999999999999999987543322 234566666666677 89999999999   98754322222222111111123


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ..+.|++|+|+++..+++.++...+..+..     .-..+|||+|++|.+
T Consensus       252 ~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       252 IERADVVLLVLDATEGITEQDLRIAGLILE-----AGKALVIVVNKWDLV  296 (429)
T ss_pred             HHhCCEEEEEEECCCCccHHHHHHHHHHHH-----cCCcEEEEEECcccC
Confidence            467899999999987899998877766654     236799999999987

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.28  E-value=4.3e-11  Score=120.15  Aligned_cols=117  Identities=18%  Similarity=0.086  Sum_probs=90.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|.|+|...+... ...++|+........+ +|..+.|+|||   |+...   ...+...+......+.
T Consensus        44 vG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~---G~~~~---~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         44 VGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTG---GWEPD---AKGLQASVAEQAEVAM  115 (472)
T ss_pred             EcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCC---CcCCc---chhHHHHHHHHHHHHH
Confidence            799999999999999998755443 3446788888888888 99999999999   97532   1234445555555566


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .+.|+||||+++.++.|..+......+..     .-..+|||.|+.|...
T Consensus       116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~-----~~~piilV~NK~Dl~~  160 (472)
T PRK03003        116 RTADAVLFVVDATVGATATDEAVARVLRR-----SGKPVILAANKVDDER  160 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCc
Confidence            78999999999987888887777777764     3578999999999643

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.28  E-value=3e-10  Score=94.43  Aligned_cols=147  Identities=18%  Similarity=0.191  Sum_probs=87.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC-CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH---HHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS-SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF---EFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~-~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~---~~i~~eI~kcv   78 (307)
                      +|.+|+||||++|+|++..... ..+. .+.|...  ....+ ++ .++++|||   |+.+...+.   +....-+..++
T Consensus         5 ~G~~g~GKTtL~~~l~~~~~~~-~~~~~~~~t~~~--~~~~~-~~-~~~~~D~~---g~~~~~~~~~~~~~~~~~~~~~~   76 (170)
T cd01876           5 AGRSNVGKSSLINALTNRKKLA-RTSKTPGKTQLI--NFFNV-ND-KFRLVDLP---GYGYAKVSKEVKEKWGKLIEEYL   76 (170)
T ss_pred             EcCCCCCHHHHHHHHhcCCcee-eecCCCCcceeE--EEEEc-cC-eEEEecCC---CccccccCHHHHHHHHHHHHHHH
Confidence            6999999999999999643222 2222 2233322  22333 33 99999999   887654321   12222222222


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHH--h
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQ--L  156 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~--~  156 (307)
                       ......+++++|++....++..+..++.++...     -.++++|+|+.|.+.+  ........     .+...++  .
T Consensus        77 -~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~--~~~~~~~~-----~~~~~l~~~~  143 (170)
T cd01876          77 -ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKK--SELAKALK-----EIKKELKLFE  143 (170)
T ss_pred             -HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCCh--HHHHHHHH-----HHHHHHHhcc
Confidence             234567889999988755677777777776642     3678999999998765  22222221     2334443  2


Q ss_pred             cCCeEEEEcCCCCc
Q 044972          157 CDNRRVLFDNKTKD  170 (307)
Q Consensus       157 Cg~R~~~fnNk~~~  170 (307)
                      ....++.++.++..
T Consensus       144 ~~~~~~~~Sa~~~~  157 (170)
T cd01876         144 IDPPIILFSSLKGQ  157 (170)
T ss_pred             CCCceEEEecCCCC
Confidence            34467777776643

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04171 SelB SelB subfamily

Probab=99.25  E-value=2.8e-10  Score=95.28  Aligned_cols=111  Identities=22%  Similarity=0.216  Sum_probs=71.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC--ccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRR--AFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|++||||||++|.+.|.+  .|.... ..+.|.........+ . +..+.++|||   |..       .....    +.
T Consensus         6 ~G~~~~GKssl~~~l~~~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~~~~Dtp---G~~-------~~~~~----~~   69 (164)
T cd04171           6 AGHIDHGKTTLIKALTGIETDRLPEEK-KRGITIDLGFAYLDL-PSGKRLGFIDVP---GHE-------KFIKN----ML   69 (164)
T ss_pred             EecCCCCHHHHHHHHhCcccccchhhh-ccCceEEeeeEEEEe-cCCcEEEEEECC---ChH-------HHHHH----HH
Confidence            6999999999999999864  232111 123344444445566 5 8899999999   852       11122    22


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|+|+++...+..+....+..+. ..|   .+++||++|+.|....
T Consensus        70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~-~~~---~~~~ilv~NK~Dl~~~  119 (164)
T cd04171          70 AGAGGIDLVLLVVAADEGIMPQTREHLEILE-LLG---IKRGLVVLTKADLVDE  119 (164)
T ss_pred             hhhhcCCEEEEEEECCCCccHhHHHHHHHHH-HhC---CCcEEEEEECccccCH
Confidence            3456899999999987434444444444332 233   2479999999997543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.25  E-value=1.2e-10  Score=104.56  Aligned_cols=116  Identities=19%  Similarity=0.170  Sum_probs=84.2

Q ss_pred             CCCCCCcHHHHHHHHHCCC--ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH---HHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRR--AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF---EFVSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~---~~i~~eI~kc   77 (307)
                      ||++||||||++|+|+|++  +..|+.  .+.|+....  ..+ ++. +.+||-|   |+.=...+.   +.....|...
T Consensus        30 ~GRSNVGKSSlIN~l~~~k~LArtSkt--PGrTq~iNf--f~~-~~~-~~lVDlP---GYGyAkv~k~~~e~w~~~i~~Y  100 (200)
T COG0218          30 AGRSNVGKSSLINALTNQKNLARTSKT--PGRTQLINF--FEV-DDE-LRLVDLP---GYGYAKVPKEVKEKWKKLIEEY  100 (200)
T ss_pred             EccCcccHHHHHHHHhCCcceeecCCC--CCccceeEE--EEe-cCc-EEEEeCC---CcccccCCHHHHHHHHHHHHHH
Confidence            7999999999999999987  444443  356665443  345 443 8999999   553223332   3455566665


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +..-.. ..++++++++...+++.|+++++++..     .--.++||+|+.|.+..
T Consensus       101 L~~R~~-L~~vvlliD~r~~~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~  150 (200)
T COG0218         101 LEKRAN-LKGVVLLIDARHPPKDLDREMIEFLLE-----LGIPVIVVLTKADKLKK  150 (200)
T ss_pred             Hhhchh-heEEEEEEECCCCCcHHHHHHHHHHHH-----cCCCeEEEEEccccCCh
Confidence            554333 888889999875677779999999987     36789999999999986

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.25  E-value=8.2e-11  Score=105.44  Aligned_cols=164  Identities=11%  Similarity=0.024  Sum_probs=97.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+||||+.|.||+.....+..                             ...+.|.........+ +|+++++||
T Consensus         5 iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~liD   83 (208)
T cd04166           5 CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKFIIAD   83 (208)
T ss_pred             EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceEEEEE
Confidence            6999999999999999765433210                             0134565555666678 999999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ||   |..       ....++.    .+...+|++|||+++...++.++...+..+. .+|   ..++|||+|+.|....
T Consensus        84 Tp---G~~-------~~~~~~~----~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~-~~~---~~~iIvviNK~D~~~~  145 (208)
T cd04166          84 TP---GHE-------QYTRNMV----TGASTADLAILLVDARKGVLEQTRRHSYILS-LLG---IRHVVVAVNKMDLVDY  145 (208)
T ss_pred             CC---cHH-------HHHHHHH----HhhhhCCEEEEEEECCCCccHhHHHHHHHHH-HcC---CCcEEEEEEchhcccC
Confidence            99   962       2222222    2346899999999987566666655444433 333   3568889999997643


Q ss_pred             CcccHHHhcCCCCCchHHHHHHhcCCe---EEEEcCCCCchhhHHHHcCCCCCChHHHHH
Q 044972          134 NDETLEDYLGPECPKPLKEILQLCDNR---RVLFDNKTKDAAKRTEQNGGQPYIDEIFAE  190 (307)
Q Consensus       134 ~~~sie~yl~~~~~~~Lk~Li~~Cg~R---~~~fnNk~~~~~~~~~~n~g~~yt~~~~~~  190 (307)
                      ....++..+     ..++.+++..+..   ++.+.-.....-.....+.+.||-+-+++.
T Consensus       146 ~~~~~~~i~-----~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~  200 (208)
T cd04166         146 SEEVFEEIV-----ADYLAFAAKLGIEDITFIPISALDGDNVVSRSENMPWYSGPTLLEH  200 (208)
T ss_pred             CHHHHHHHH-----HHHHHHHHHcCCCCceEEEEeCCCCCCCccCCCCCCCCCCCcHHHH
Confidence            111122222     2466777776643   455554433221111134444444444443

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.24  E-value=9.7e-11  Score=123.15  Aligned_cols=118  Identities=16%  Similarity=0.089  Sum_probs=92.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.|||||||++|.|+|.+...+. ...++|+.+......| +|..+.|||||   |+....   ..+...+......+
T Consensus       280 IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~---G~~~~~---~~~~~~~~~~~~~~  351 (712)
T PRK09518        280 IVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTG---GWEADV---EGIDSAIASQAQIA  351 (712)
T ss_pred             EECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCC---CcCCCC---ccHHHHHHHHHHHH
Confidence            4799999999999999998653332 2357888888888889 99999999999   976422   23555566666666


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ..++|++|||+++...++..+...+..+..     ....+|+|+++.|...
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~  397 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQA  397 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccc
Confidence            778999999999876789888877777764     4679999999999764

>cd01898 Obg Obg subfamily

Probab=99.22  E-value=1.4e-10  Score=98.19  Aligned_cols=122  Identities=15%  Similarity=0.067  Sum_probs=72.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe-EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ-VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr-~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      .+|.+||||||++|.|.|.+.-.+..  ...|.....+...+ ++. .+.++|||   |+.+.......+.....+    
T Consensus         5 ivG~~~~GKStl~~~l~~~~~~v~~~--~~~t~~~~~~~~~~-~~~~~~~l~Dtp---G~~~~~~~~~~~~~~~~~----   74 (170)
T cd01898           5 LVGLPNAGKSTLLSAISNAKPKIADY--PFTTLVPNLGVVRV-DDGRSFVVADIP---GLIEGASEGKGLGHRFLR----   74 (170)
T ss_pred             EECCCCCCHHHHHHHHhcCCccccCC--CccccCCcceEEEc-CCCCeEEEEecC---cccCcccccCCchHHHHH----
Confidence            47999999999999999976522111  12244555555566 666 99999999   986432211112222211    


Q ss_pred             cCCCCeEEEEEEeCCCC-CCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNR-FSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~R-fT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .....|++++|+++..+ -+-+. ...++.+........-...+||.|+.|....
T Consensus        75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  129 (170)
T cd01898          75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE  129 (170)
T ss_pred             HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence            12357899999998732 11122 2233334433222234678999999997654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.22  E-value=2.1e-10  Score=91.78  Aligned_cols=141  Identities=15%  Similarity=0.024  Sum_probs=81.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe---CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK---DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|++|+||||++|.|++...+....   ..|. .........   .+..++++|||   |..+.....           .
T Consensus         2 iG~~~~GKStl~~~l~~~~~~~~~~---~~t~-~~~~~~~~~~~~~~~~~~l~D~~---g~~~~~~~~-----------~   63 (157)
T cd00882           2 VGDSGVGKTSLLNRLLGGEFVPEEY---ETTI-IDFYSKTIEVDGKKVKLQIWDTA---GQERFRSLR-----------R   63 (157)
T ss_pred             CCcCCCcHHHHHHHHHhCCcCCccc---ccch-hheeeEEEEECCEEEEEEEEecC---ChHHHHhHH-----------H
Confidence            6999999999999999988642221   1222 222222331   26789999999   875432111           2


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+..|++++|+++....+..+......+..........+++|++|+.|.....  ......      ..+.....++-
T Consensus        64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~--~~~~~~------~~~~~~~~~~~  135 (157)
T cd00882          64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER--VVSEEE------LAEQLAKELGV  135 (157)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc--chHHHH------HHHHHHhhcCC
Confidence            3457899999999987333333333221112222233467899999999976541  111110      12334445566


Q ss_pred             eEEEEcCCCC
Q 044972          160 RRVLFDNKTK  169 (307)
Q Consensus       160 R~~~fnNk~~  169 (307)
                      .++..+....
T Consensus       136 ~~~~~s~~~~  145 (157)
T cd00882         136 PYFETSAKTG  145 (157)
T ss_pred             cEEEEecCCC
Confidence            6777776543

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.20  E-value=1.1e-10  Score=115.72  Aligned_cols=117  Identities=21%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||+.|.++|++...+.. ..+.|++.......+ +|.+|.++||.   |+.+|...-+.+.=+  ++. ...
T Consensus       223 iG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~i-~G~pv~l~DTA---GiRet~d~VE~iGIe--Rs~-~~i  294 (454)
T COG0486         223 IGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDINL-NGIPVRLVDTA---GIRETDDVVERIGIE--RAK-KAI  294 (454)
T ss_pred             ECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEEE-CCEEEEEEecC---CcccCccHHHHHHHH--HHH-HHH
Confidence            7999999999999999999887643 457799999999999 99999999999   999876444443323  322 234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...|.+|+|++.....+.++...+..+.      .-+.+++|.|+.|....
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~  339 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLALIELLP------KKKPIIVVLNKADLVSK  339 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHHHHHhcc------cCCCEEEEEechhcccc
Confidence            5789999999998557888887776211      35678999999997665

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.20  E-value=1.1e-10  Score=110.24  Aligned_cols=152  Identities=20%  Similarity=0.193  Sum_probs=84.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccC------CCCCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCCcCHHH---
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVG------SSEDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSSADFEF---   69 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s------~~svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~~~~~~---   69 (307)
                      +||++|+||||++|+|++...+.....      ....|.........+. +|  ..++|||||   ||.|. .+...   
T Consensus         9 VvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTp---GfGd~-i~n~~~~~   84 (281)
T PF00735_consen    9 VVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTP---GFGDN-IDNSDCWE   84 (281)
T ss_dssp             EEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC----CSSS-STHCHHHH
T ss_pred             EECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCC---Ccccc-ccchhhhH
Confidence            589999999999999999887655311      0111222222222221 33  488999999   99875 23222   


Q ss_pred             -HHHHHHHH----HH---------hcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972           70 -VSKEIVKC----IG---------MAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN  134 (307)
Q Consensus        70 -i~~eI~kc----v~---------ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~  134 (307)
                       +..-|...    +.         ...+.+||.|+.++.. .++++.|..+++.|.+      +-++|-|+.++|.|.. 
T Consensus        85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~------~vNvIPvIaKaD~lt~-  157 (281)
T PF00735_consen   85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK------RVNVIPVIAKADTLTP-  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT------TSEEEEEESTGGGS-H-
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc------cccEEeEEecccccCH-
Confidence             22222221    11         1123689999999864 3799999998888876      6789999999999976 


Q ss_pred             cccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCCc
Q 044972          135 DETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKD  170 (307)
Q Consensus       135 ~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~~  170 (307)
                       ..+..+-     ..+..-++..+=+++-|.....+
T Consensus       158 -~el~~~k-----~~i~~~l~~~~I~~f~f~~~~~~  187 (281)
T PF00735_consen  158 -EELQAFK-----QRIREDLEENNIKIFDFPEDDDD  187 (281)
T ss_dssp             -HHHHHHH-----HHHHHHHHHTT--S---------
T ss_pred             -HHHHHHH-----HHHHHHHHHcCceeecccccccc
Confidence             4555443     24677778888888777765544

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.19  E-value=1.9e-10  Score=113.21  Aligned_cols=120  Identities=15%  Similarity=0.105  Sum_probs=77.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      -+|.|||||||++|+|++.+.-.   +..+ .|.....+...+.+++.++|+|||   |+.........+...+.+    
T Consensus       164 lVG~PNaGKSTLln~Lt~~k~~v---s~~p~TT~~p~~Giv~~~~~~~i~~vDtP---Gi~~~a~~~~~Lg~~~l~----  233 (390)
T PRK12298        164 LLGLPNAGKSTFIRAVSAAKPKV---ADYPFTTLVPNLGVVRVDDERSFVVADIP---GLIEGASEGAGLGIRFLK----  233 (390)
T ss_pred             EEcCCCCCHHHHHHHHhCCcccc---cCCCCCccCcEEEEEEeCCCcEEEEEeCC---CccccccchhhHHHHHHH----
Confidence            37999999999999999987532   3333 455667777777345779999999   998643222223333333    


Q ss_pred             cCCCCeEEEEEEeCCCCCC-----HHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFS-----EEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT-----~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.+++|+|+++. .++     +.....++.+..+ ... .-+..|||+|+.|.+..
T Consensus       234 ~i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~-~~~L~~kP~IlVlNKiDl~~~  290 (390)
T PRK12298        234 HLERCRVLLHLIDIA-PIDGSDPVENARIIINELEKY-SPKLAEKPRWLVFNKIDLLDE  290 (390)
T ss_pred             HHHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhh-hhhhcCCCEEEEEeCCccCCh
Confidence            235789999999875 221     2223334444432 222 34688999999997643

>cd01878 HflX HflX subfamily

Probab=99.19  E-value=2.9e-10  Score=100.41  Aligned_cols=120  Identities=18%  Similarity=0.048  Sum_probs=74.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|++||||||++|.|+|...+.....  ..|..+......+ ++ ..++|+|||   |+.+.. +. .....+.. ....
T Consensus        47 iG~~g~GKStLl~~l~~~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~i~Dt~---G~~~~~-~~-~~~~~~~~-~~~~  117 (204)
T cd01878          47 VGYTNAGKSTLFNALTGADVYAEDQL--FATLDPTTRRLRL-PDGREVLLTDTV---GFIRDL-PH-QLVEAFRS-TLEE  117 (204)
T ss_pred             ECCCCCCHHHHHHHHhcchhccCCcc--ceeccceeEEEEe-cCCceEEEeCCC---ccccCC-CH-HHHHHHHH-HHHH
Confidence            69999999999999999875543221  2233444445556 44 499999999   986532 12 22222221 1123


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|++++|+++..+.+..+... ...+.. ++. .-..++||+|+.|.++.
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~-~~~~viiV~NK~Dl~~~  168 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIETVEKVLKE-LGA-EDIPMILVLNKIDLLDD  168 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCc-CCCCEEEEEEccccCCh
Confidence            457899999999874444443322 333333 232 13679999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.19  E-value=2.6e-10  Score=110.83  Aligned_cols=123  Identities=17%  Similarity=0.093  Sum_probs=79.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      -+|.|||||||++|.++|.+++.+..  ...|.........+++|.++.++|||   |+... .+.. +.+.+...+ ..
T Consensus       194 lvG~~NvGKSSLln~L~~~~~~v~~~--~~tT~d~~~~~i~~~~~~~i~l~DT~---G~~~~-l~~~-lie~f~~tl-e~  265 (351)
T TIGR03156       194 LVGYTNAGKSTLFNALTGADVYAADQ--LFATLDPTTRRLDLPDGGEVLLTDTV---GFIRD-LPHE-LVAAFRATL-EE  265 (351)
T ss_pred             EECCCCCCHHHHHHHHhCCceeeccC--CccccCCEEEEEEeCCCceEEEEecC---ccccc-CCHH-HHHHHHHHH-HH
Confidence            37999999999999999998654332  23355555556666578999999999   98431 1222 222233222 23


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....|++|+|+++..+.+.++...+..+...++. .-.++|+|+|+.|....
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~-~~~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGA-EDIPQLLVYNKIDLLDE  316 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-CCCCEEEEEEeecCCCh
Confidence            4578999999998745555444333333333342 23579999999997643

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.19  E-value=7.1e-11  Score=110.68  Aligned_cols=142  Identities=13%  Similarity=0.071  Sum_probs=90.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      |+|.||+|||||+|+|++.+...+..- .+.|.......... +|..+++.|||   |+.|....+.+...    .+...
T Consensus        44 i~G~TG~GKSSliNALF~~~~~~v~~v-g~~t~~~~~~~~~~-~~~~l~lwDtP---G~gdg~~~D~~~r~----~~~d~  114 (296)
T COG3596          44 LMGATGAGKSSLINALFQGEVKEVSKV-GVGTDITTRLRLSY-DGENLVLWDTP---GLGDGKDKDAEHRQ----LYRDY  114 (296)
T ss_pred             EecCCCCcHHHHHHHHHhccCceeeec-ccCCCchhhHHhhc-cccceEEecCC---CcccchhhhHHHHH----HHHHH
Confidence            789999999999999996554332210 11122222223345 88999999999   99987654433333    33344


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC----------cccHHHhcCCCCCchHH
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN----------DETLEDYLGPECPKPLK  151 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~----------~~sie~yl~~~~~~~Lk  151 (307)
                      .|..|++|+++++++|+-.-|...+.-+.-   ....+.++++.|..|.....          ..++.+|+.. .-..+.
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~---~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~~~~~  190 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDEDFLRDVII---LGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KAEALG  190 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHHHHHHHHH---hccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HHHHHH
Confidence            577889999999987876666655444443   33348999999999876541          1345566654 223455


Q ss_pred             HHHHh
Q 044972          152 EILQL  156 (307)
Q Consensus       152 ~Li~~  156 (307)
                      ++++.
T Consensus       191 ~~~q~  195 (296)
T COG3596         191 RLFQE  195 (296)
T ss_pred             HHHhh
Confidence            55555

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.18  E-value=2.5e-10  Score=97.74  Aligned_cols=112  Identities=17%  Similarity=0.070  Sum_probs=75.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccC--------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVG--------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF   67 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s--------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~   67 (307)
                      .+|.+||||||+.|+|++.........              ..+.|.........+ .+..+++||||   |..+.    
T Consensus         4 v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtp---G~~~~----   75 (189)
T cd00881           4 IAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTP---GHEDF----   75 (189)
T ss_pred             EEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCC---CcHHH----
Confidence            479999999999999999865433211              112343444444556 77899999999   97531    


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           68 EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        68 ~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                         .....    .+...+|++++|+++...++......+..+..     ...+++||+|+.|....
T Consensus        76 ---~~~~~----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~  129 (189)
T cd00881          76 ---SSEVI----RGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE  129 (189)
T ss_pred             ---HHHHH----HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch
Confidence               11111    22347899999999875566666655555443     45789999999998863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.18  E-value=2.9e-10  Score=101.67  Aligned_cols=132  Identities=16%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             CCCCCCcHHHHHHHHHCC------Ccc-ccc-------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGR------RAF-KSK-------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~------~~F-~s~-------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+|+|||||.|.|++.      ..+ ...       ....+.|.........+ +++++++||||   |..+      
T Consensus         8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtP---G~~~------   77 (195)
T cd01884           8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCP---GHAD------   77 (195)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECc---CHHH------
Confidence            699999999999999864      111 000       00224444444445566 88999999999   8632      


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                       ...++    ..+..+.|++|||+++...++.++...+..+... |   ..++||++|+.|.+..  ..+.+++.+    
T Consensus        78 -~~~~~----~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~~--~~~~~~~~~----  142 (195)
T cd01884          78 -YIKNM----ITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-G---VPYIVVFLNKADMVDD--EELLELVEM----  142 (195)
T ss_pred             -HHHHH----HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCcEEEEEeCCCCCCc--HHHHHHHHH----
Confidence             22333    3344679999999998756788887777766542 2   3468899999998743  334444432    


Q ss_pred             hHHHHHHhcCC
Q 044972          149 PLKEILQLCDN  159 (307)
Q Consensus       149 ~Lk~Li~~Cg~  159 (307)
                      .++.++..+|.
T Consensus       143 ~i~~~l~~~g~  153 (195)
T cd01884         143 EVRELLSKYGF  153 (195)
T ss_pred             HHHHHHHHhcc
Confidence            57777877653

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.17  E-value=3.5e-10  Score=113.58  Aligned_cols=119  Identities=12%  Similarity=0.098  Sum_probs=83.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH--Hh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI--GM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv--~l   80 (307)
                      +|.|||||||++|.|+|.+.+... ...+.|.........+ +|..+.++|||   |+........  ..+....+  ..
T Consensus       217 iG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTa---G~~~~~~~~~--~~e~~~~~~~~~  289 (472)
T PRK03003        217 VGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTA---GLRRRVKQAS--GHEYYASLRTHA  289 (472)
T ss_pred             ECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECC---Cccccccccc--hHHHHHHHHHHH
Confidence            699999999999999998754332 2335566666666778 99999999999   9853211100  01111111  12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +..+.|++|||+++..+++.++...+..+..     .-..+|||+|++|....
T Consensus       290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~~  337 (472)
T PRK03003        290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE-----AGRALVLAFNKWDLVDE  337 (472)
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh
Confidence            3468999999999987899888876666553     24689999999997653

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.16  E-value=1.5e-08  Score=98.24  Aligned_cols=152  Identities=20%  Similarity=0.235  Sum_probs=100.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCcccc----ccCCC--CCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCC---cCHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKS----KVGSS--EDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSS---ADFEF   69 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s----~~s~~--svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~---~~~~~   69 (307)
                      +||+.|+||||++||++|...-..    ...+.  +.|.........+. +|  -.++|||||   ||.|.-   ..-+-
T Consensus        28 ~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtp---GfGD~idNs~~we~  104 (373)
T COG5019          28 VVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTP---GFGDFIDNSKCWEP  104 (373)
T ss_pred             EecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccC---CccccccccccHHH
Confidence            689999999999999999843222    11222  22333334444441 33  489999999   987642   22222


Q ss_pred             HHHHHHHH----H----------HhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972           70 VSKEIVKC----I----------GMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN  134 (307)
Q Consensus        70 i~~eI~kc----v----------~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~  134 (307)
                      |...|..-    +          ......+||.|+.++.. ..+++-|..+++.|-+      .-+.|-|+.++|.|.. 
T Consensus       105 I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~------~vNlIPVI~KaD~lT~-  177 (373)
T COG5019         105 IVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK------RVNLIPVIAKADTLTD-  177 (373)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc------ccCeeeeeeccccCCH-
Confidence            33333221    1          13345799999999753 4899999999998886      5689999999999976 


Q ss_pred             cccHHHhcCCCCCchHHHHHHhcCCeEEE-EcCCCC
Q 044972          135 DETLEDYLGPECPKPLKEILQLCDNRRVL-FDNKTK  169 (307)
Q Consensus       135 ~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~-fnNk~~  169 (307)
                       .-+.+|-     ..+.+.|..+.=+++. ||+-..
T Consensus       178 -~El~~~K-----~~I~~~i~~~nI~vf~pyd~e~~  207 (373)
T COG5019         178 -DELAEFK-----ERIREDLEQYNIPVFDPYDPEDD  207 (373)
T ss_pred             -HHHHHHH-----HHHHHHHHHhCCceeCCCCcccc
Confidence             4455543     3477888888877763 566543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.16  E-value=4.9e-10  Score=112.05  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=79.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE-IVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e-I~kcv~   79 (307)
                      .+|+|||||||++|.++|.+. +.+.  ..+.|+.+......+ +|.++.++|||   |+.++.   +.+... |.++ .
T Consensus       208 IvG~~nvGKSSLiN~L~~~~~aivs~--~pgtTrd~~~~~i~~-~g~~v~l~DTa---G~~~~~---~~ie~~gi~~~-~  277 (442)
T TIGR00450       208 IVGSPNVGKSSLLNALLKQDRAIVSD--IKGTTRDVVEGDFEL-NGILIKLLDTA---GIREHA---DFVERLGIEKS-F  277 (442)
T ss_pred             EECCCCCcHHHHHHHHhCCCCcccCC--CCCcEEEEEEEEEEE-CCEEEEEeeCC---Ccccch---hHHHHHHHHHH-H
Confidence            379999999999999999864 4433  235677777777788 99999999999   987643   212111 2222 2


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ......|++|+|+++.++.+.++. .+..+..     .-.++|||.|+.|..
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~  323 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLK  323 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCC
Confidence            344689999999999767776654 3322221     235789999999964

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.15  E-value=3.5e-10  Score=113.16  Aligned_cols=115  Identities=21%  Similarity=0.203  Sum_probs=79.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE-IVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e-I~kcv~ls   81 (307)
                      +|.|||||||++|.++|.+...+.. ..+.|.........+ +|..+.++|||   |+.++.   ..+... +.+. ...
T Consensus       221 vG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~i~l~DT~---G~~~~~---~~ie~~gi~~~-~~~  291 (449)
T PRK05291        221 AGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHINL-DGIPLRLIDTA---GIRETD---DEVEKIGIERS-REA  291 (449)
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEEE-CCeEEEEEeCC---CCCCCc---cHHHHHHHHHH-HHH
Confidence            7999999999999999987533222 234566666667778 99999999999   987643   222221 2222 223


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....|++|+|+++..+.+.++...+..       ....+++||+|+.|....
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~  336 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGE  336 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhcccc
Confidence            467899999999976666665443322       224689999999997643

>PRK11058 GTPase HflX; Provisional

Probab=99.12  E-value=8.7e-10  Score=109.79  Aligned_cols=123  Identities=14%  Similarity=0.016  Sum_probs=80.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      -+|.|||||||++|.++|.+++.+..  ...|.........++++..++++|||   |+... .+.. +...+... ...
T Consensus       202 lVG~~NaGKSSLlN~Lt~~~~~v~~~--~~tTld~~~~~i~l~~~~~~~l~DTa---G~~r~-lp~~-lve~f~~t-l~~  273 (426)
T PRK11058        202 LVGYTNAGKSTLFNRITEARVYAADQ--LFATLDPTLRRIDVADVGETVLADTV---GFIRH-LPHD-LVAAFKAT-LQE  273 (426)
T ss_pred             EECCCCCCHHHHHHHHhCCceeeccC--CCCCcCCceEEEEeCCCCeEEEEecC---ccccc-CCHH-HHHHHHHH-HHH
Confidence            37999999999999999988774332  23455555556667344599999999   98532 2222 22333332 233


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|++|+|+++.++.+.+....+..+...++. .-..+|+|+|+.|.+..
T Consensus       274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~-~~~pvIiV~NKiDL~~~  324 (426)
T PRK11058        274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA-HEIPTLLVMNKIDMLDD  324 (426)
T ss_pred             hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc-CCCCEEEEEEcccCCCc
Confidence            4689999999998755555554443333333332 23579999999997643

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.11  E-value=8.3e-10  Score=105.61  Aligned_cols=118  Identities=17%  Similarity=0.165  Sum_probs=83.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~   79 (307)
                      -||.|||||||+.+.|.+-+.=..   +.+ .|+....+.... ++.++-|||||   ||.|-..+. ..|.+.-.-++.
T Consensus       173 VaG~PNVGKSSlv~~lT~AkpEvA---~YPFTTK~i~vGhfe~-~~~R~QvIDTP---GlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         173 VAGYPNVGKSSLVRKLTTAKPEVA---PYPFTTKGIHVGHFER-GYLRIQVIDTP---GLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             EecCCCCcHHHHHHHHhcCCCccC---CCCccccceeEeeeec-CCceEEEecCC---cccCCChHHhcHHHHHHHHHHH
Confidence            379999999999999999775332   233 466778888888 88899999999   999854332 223222221121


Q ss_pred             hcCCCCeEEEEEEeCC--CCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVR--NRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~--~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .   =-++|||+++..  .-|+-+++ ..++.++..|.    ..+|+|+|+.|-...
T Consensus       246 h---l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~  295 (346)
T COG1084         246 H---LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE  295 (346)
T ss_pred             H---hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence            1   135888998875  36777664 46788888876    789999999997643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.11  E-value=1.1e-09  Score=115.14  Aligned_cols=119  Identities=13%  Similarity=0.081  Sum_probs=83.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH--Hh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI--GM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv--~l   80 (307)
                      +|.|||||||++|+|+|.+...+. ...+.|.........+ +|..+.+||||   |+.........  .+....+  ..
T Consensus       456 vG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTa---G~~~~~~~~~~--~e~~~~~r~~~  528 (712)
T PRK09518        456 VGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTA---GIKRRQHKLTG--AEYYSSLRTQA  528 (712)
T ss_pred             ECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECC---CcccCcccchh--HHHHHHHHHHH
Confidence            699999999999999998753222 1234566666666778 99999999999   98643222111  1111111  12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +....|++|||+++..+++.++...+..+..     .-..+|||+|++|..+.
T Consensus       529 ~i~~advvilViDat~~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~~  576 (712)
T PRK09518        529 AIERSELALFLFDASQPISEQDLKVMSMAVD-----AGRALVLVFNKWDLMDE  576 (712)
T ss_pred             HhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCCh
Confidence            3478999999999987899988877665543     34689999999997654

>cd00154 Rab Rab family

Probab=99.10  E-value=2.8e-09  Score=87.58  Aligned_cols=139  Identities=9%  Similarity=-0.053  Sum_probs=78.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      .+|++||||||+.|.+++.+......+.  .+..+......++ .+..+.++|||   |...       ...    ....
T Consensus         5 ~~G~~~~GKStl~~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~l~D~~---g~~~-------~~~----~~~~   68 (159)
T cd00154           5 LIGDSGVGKTSLLLRFVDGKFDENYKST--IGVDFKSKTIEIDGKTVKLQIWDTA---GQER-------FRS----ITPS   68 (159)
T ss_pred             EECCCCCCHHHHHHHHHhCcCCCccCCc--eeeeeEEEEEEECCEEEEEEEEecC---ChHH-------HHH----HHHH
Confidence            4799999999999999988754331111  1112222223330 23688999999   8632       111    1223


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ..+.++++++|+++. .  .+....+..+...|-..  .-.+++|+.|+.|........         ...++.+....+
T Consensus        69 ~~~~~d~ii~v~d~~-~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~  136 (159)
T cd00154          69 YYRGAHGAILVYDIT-N--RESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS---------TEEAQQFAKENG  136 (159)
T ss_pred             HhcCCCEEEEEEECC-C--HHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc---------HHHHHHHHHHcC
Confidence            345789999999986 3  12122222222222222  246789999999986221011         123455666666


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      ..|+..+-+.
T Consensus       137 ~~~~~~sa~~  146 (159)
T cd00154         137 LLFFETSAKT  146 (159)
T ss_pred             CeEEEEecCC
Confidence            6666666544

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.10  E-value=3.9e-10  Score=96.22  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=70.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEE------------EE--------------------------
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRT------------ML--------------------------   43 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~------------~~--------------------------   43 (307)
                      +|.+++||||++|+|+|.+.+.++..  ++|.... ...+            .+                          
T Consensus         4 ~G~~ssGKSTliNaLlG~~ilp~~~~--~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (168)
T PF00350_consen    4 VGQFSSGKSTLINALLGRPILPSGVG--PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIEG   81 (168)
T ss_dssp             EEBTTSSHHHHHHHHHTSS-SSSSSS--STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHhcccCccccc--ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccccc
Confidence            69999999999999999987765443  3333221 1111            00                          


Q ss_pred             ----------------eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHH
Q 044972           44 ----------------KDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIH  107 (307)
Q Consensus        44 ----------------~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~  107 (307)
                                      +....+++||||   |+.++......+..+.   +    +..|++|+|+++...++..+...+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~lvDtP---G~~~~~~~~~~~~~~~---~----~~~d~vi~V~~~~~~~~~~~~~~l~  151 (168)
T PF00350_consen   82 KLEQISSKVIVISISSPLLRNLTLVDTP---GLNSTNSEHTEITEEY---L----PKADVVIFVVDANQDLTESDMEFLK  151 (168)
T ss_dssp             SSS-S-SSEEEEEEEETTSCSEEEEEEE---EBHSSHTTTSHHHHHH---H----STTEEEEEEEETTSTGGGHHHHHHH
T ss_pred             cccccccceeEEeeccccccceEEEeCC---ccccchhhhHHHHHHh---h----ccCCEEEEEeccCcccchHHHHHHH
Confidence                            023569999999   9987554433322221   1    5679999999998668877766665


Q ss_pred             HHHHhhccccCCeEEEEEec
Q 044972          108 SLESLFGKKVFDYMIVVFTR  127 (307)
Q Consensus       108 ~i~~~FG~~~~~~~IVLfT~  127 (307)
                      .....    ....+|+|+|+
T Consensus       152 ~~~~~----~~~~~i~V~nk  167 (168)
T PF00350_consen  152 QMLDP----DKSRTIFVLNK  167 (168)
T ss_dssp             HHHTT----TCSSEEEEEE-
T ss_pred             HHhcC----CCCeEEEEEcC
Confidence            55543    34448888886

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>smart00053 DYNc Dynamin, GTPase

Probab=99.09  E-value=3.7e-09  Score=97.94  Aligned_cols=107  Identities=13%  Similarity=0.087  Sum_probs=67.5

Q ss_pred             eEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhcCCCC-eEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEE
Q 044972           47 QVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMAKDGI-HAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMI  122 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls~pGp-ha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~I  122 (307)
                      ..++|||||   |+++...  ....+...|.+.+......+ +++|+|+++...++..+ ....+.+..     ..+.+|
T Consensus       125 ~~ltLIDlP---Gl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-----~~~rti  196 (240)
T smart00053      125 LNLTLIDLP---GITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-----QGERTI  196 (240)
T ss_pred             CceEEEeCC---CccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-----cCCcEE
Confidence            689999999   9985421  12334444544444433433 58999999876777766 344444443     478999


Q ss_pred             EEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCCc
Q 044972          123 VVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKD  170 (307)
Q Consensus       123 VLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~~  170 (307)
                      +|+|+.|.++.. ..+-+.+.+ ..       ...+-.||+.=|+..+
T Consensus       197 ~ViTK~D~~~~~-~~~~~~~~~-~~-------~~l~~g~~~v~nr~~~  235 (240)
T smart00053      197 GVITKLDLMDEG-TDARDILEN-KL-------LPLRRGYIGVVNRSQK  235 (240)
T ss_pred             EEEECCCCCCcc-HHHHHHHhC-Cc-------cccCCCEEEEECCChH
Confidence            999999998753 335555554 11       1245668877776543

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.09  E-value=1.5e-09  Score=91.56  Aligned_cols=109  Identities=13%  Similarity=0.003  Sum_probs=70.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |... ...+.|.........+.  .+..+++||||   |..+.       .. +   ...
T Consensus         6 iG~~~~GKtsli~~l~~~~-~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtp---G~~~~-------~~-~---~~~   69 (168)
T cd01887           6 MGHVDHGKTTLLDKIRKTN-VAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTP---GHEAF-------TN-M---RAR   69 (168)
T ss_pred             EecCCCCHHHHHHHHHhcc-cccc-cCCCeEEeeccEEEecccCCcceEEEEeCC---CcHHH-------HH-H---HHH
Confidence            6999999999999999876 3322 12234444433333441  27899999999   96321       11 1   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ..+..|++|+|+++......+....+..+..     .-.+.+||+|+.|...
T Consensus        70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~  116 (168)
T cd01887          70 GASLTDIAILVVAADDGVMPQTIEAIKLAKA-----ANVPFIVALNKIDKPN  116 (168)
T ss_pred             HHhhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEEceeccc
Confidence            3467899999999874555555555555443     2357999999999654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>CHL00071 tufA elongation factor Tu

Probab=99.08  E-value=8e-10  Score=109.20  Aligned_cols=132  Identities=16%  Similarity=0.133  Sum_probs=88.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc--------------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV--------------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~--------------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+++|||||.|+||+.....++.              -..+.|..+......+ +++++++||||   |..       
T Consensus        18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtP---Gh~-------   86 (409)
T CHL00071         18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCP---GHA-------   86 (409)
T ss_pred             ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECC---ChH-------
Confidence            6999999999999999853211110              0134455544444556 78999999999   842       


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                      +....+.    .+..++|++|||+++...++.++...+..+..+ |   ..+.||++|++|....  ..+.+.+.+    
T Consensus        87 ~~~~~~~----~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g---~~~iIvvvNK~D~~~~--~~~~~~~~~----  152 (409)
T CHL00071         87 DYVKNMI----TGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-G---VPNIVVFLNKEDQVDD--EELLELVEL----  152 (409)
T ss_pred             HHHHHHH----HHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCEEEEEEEccCCCCH--HHHHHHHHH----
Confidence            2233333    334578999999998756888888877766542 3   4568899999998754  334444432    


Q ss_pred             hHHHHHHhcCC
Q 044972          149 PLKEILQLCDN  159 (307)
Q Consensus       149 ~Lk~Li~~Cg~  159 (307)
                      .+..++..++.
T Consensus       153 ~l~~~l~~~~~  163 (409)
T CHL00071        153 EVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHhCC
Confidence            57778877653

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.04  E-value=4.1e-09  Score=96.62  Aligned_cols=83  Identities=13%  Similarity=0.085  Sum_probs=58.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|.|.|.......  ....|..+..+...+ +|..+.++|||   |+.+...........+    ....
T Consensus         6 vG~~~~GKStLl~~Ltg~~~~v~~--~~~tT~~~~~g~~~~-~~~~i~l~Dtp---G~~~~~~~~~~~~~~~----l~~~   75 (233)
T cd01896           6 VGFPSVGKSTLLSKLTNTKSEVAA--YEFTTLTCVPGVLEY-KGAKIQLLDLP---GIIEGAADGKGRGRQV----IAVA   75 (233)
T ss_pred             ECCCCCCHHHHHHHHHCCCccccC--CCCccccceEEEEEE-CCeEEEEEECC---CcccccccchhHHHHH----HHhh
Confidence            699999999999999998754322  234566677777788 99999999999   9865332111222222    2345


Q ss_pred             CCCeEEEEEEeCC
Q 044972           83 DGIHAVLIVFSVR   95 (307)
Q Consensus        83 pGpha~LLVl~~~   95 (307)
                      ..++++|+|+++.
T Consensus        76 ~~ad~il~V~D~t   88 (233)
T cd01896          76 RTADLILMVLDAT   88 (233)
T ss_pred             ccCCEEEEEecCC
Confidence            6789999999764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01861 Rab6 Rab6 subfamily

Probab=99.03  E-value=2e-08  Score=84.20  Aligned_cols=138  Identities=10%  Similarity=0.007  Sum_probs=80.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|+++|.+...+.  ....|.+.......+ +|.  .+.++|||   |...       ....+    .
T Consensus         5 liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~D~~---G~~~-------~~~~~----~   67 (161)
T cd01861           5 FLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYL-EDKTVRLQLWDTA---GQER-------FRSLI----P   67 (161)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEE-CCEEEEEEEEECC---CcHH-------HHHHH----H
Confidence            4799999999999999998743321  122333333444456 563  58999999   8421       11111    1


Q ss_pred             hcCCCCeEEEEEEeCCCC--CCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           80 MAKDGIHAVLIVFSVRNR--FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~R--fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      ....+.|++++|++++++  |+.- ...+..+....+.  -..++|+.|+.|.......+         ...+..+.+..
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~---------~~~~~~~~~~~  135 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQVS---------TEEGEKKAKEL  135 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCC--CCEEEEEEEChhccccCccC---------HHHHHHHHHHh
Confidence            223678999999998743  3322 2233334333332  46899999999975431111         12344555555


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +-.|+..+.+.
T Consensus       136 ~~~~~~~Sa~~  146 (161)
T cd01861         136 NAMFIETSAKA  146 (161)
T ss_pred             CCEEEEEeCCC
Confidence            55566555544

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.02  E-value=4.3e-09  Score=101.82  Aligned_cols=123  Identities=11%  Similarity=0.044  Sum_probs=77.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.|||||||++|+|.+.+.-.+..  ...|.........+.++..++|+|||   |+.+.......+.....+.    
T Consensus       163 lVG~PNaGKSTLln~ls~a~~~va~y--pfTT~~p~~G~v~~~~~~~~~i~D~P---Gli~ga~~~~gLg~~flrh----  233 (335)
T PRK12299        163 LVGLPNAGKSTLISAVSAAKPKIADY--PFTTLHPNLGVVRVDDYKSFVIADIP---GLIEGASEGAGLGHRFLKH----  233 (335)
T ss_pred             EEcCCCCCHHHHHHHHHcCCCccCCC--CCceeCceEEEEEeCCCcEEEEEeCC---CccCCCCccccHHHHHHHH----
Confidence            37999999999999999876432221  12455566666666467899999999   9975432222233333332    


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.+++|+|+++.+.-+-++...+..-...+.+. .-+..|||+|+.|.+..
T Consensus       234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~  286 (335)
T PRK12299        234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE  286 (335)
T ss_pred             hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence            34678999999987322333333332222223333 24689999999997654

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.02  E-value=9.2e-09  Score=86.22  Aligned_cols=140  Identities=14%  Similarity=-0.013  Sum_probs=79.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.+ |..... ..++.........+ +|  ..+.++|||   |...       . ..+   ...
T Consensus         6 vG~~~vGKTsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~-------~-~~~---~~~   68 (168)
T cd04119           6 MGNSGVGKSCIIKRYCEGR-FVSKYL-PTIGIDYGVKKVSV-RNKEVRVNFFDLS---GHPE-------Y-LEV---RNE   68 (168)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCCC-CccceeEEEEEEEE-CCeEEEEEEEECC---ccHH-------H-HHH---HHH
Confidence            7999999999999999987 432221 12222222223334 44  477899999   8632       1 111   223


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc---ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK---KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL  156 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~---~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~  156 (307)
                      ...+.+++|||+++.++-+-+. ...+..+....++   ..-..+++|.|+.|..+....+         ....+.+...
T Consensus        69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~  139 (168)
T cd04119          69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS---------EDEGRLWAES  139 (168)
T ss_pred             HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC---------HHHHHHHHHH
Confidence            3568999999999873322111 2233444444443   1346799999999976431011         1223444555


Q ss_pred             cCCeEEEEcCCC
Q 044972          157 CDNRRVLFDNKT  168 (307)
Q Consensus       157 Cg~R~~~fnNk~  168 (307)
                      .+..|+..+.++
T Consensus       140 ~~~~~~~~Sa~~  151 (168)
T cd04119         140 KGFKYFETSACT  151 (168)
T ss_pred             cCCeEEEEECCC
Confidence            555666666554

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.96  E-value=1.8e-08  Score=100.30  Aligned_cols=119  Identities=12%  Similarity=0.046  Sum_probs=74.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.|||||||++|+|.+.+.-.+..  ...|.........+.++..++|+|||   |+.........+.....+.    
T Consensus       163 lVG~pNaGKSTLLn~Lt~ak~kIa~y--pfTTl~PnlG~v~~~~~~~~~laD~P---Gliega~~~~gLg~~fLrh----  233 (424)
T PRK12297        163 LVGFPNVGKSTLLSVVSNAKPKIANY--HFTTLVPNLGVVETDDGRSFVMADIP---GLIEGASEGVGLGHQFLRH----  233 (424)
T ss_pred             EEcCCCCCHHHHHHHHHcCCCccccC--CcceeceEEEEEEEeCCceEEEEECC---CCcccccccchHHHHHHHH----
Confidence            37999999999999999977433221  23455566666666338899999999   9864221112233333222    


Q ss_pred             CCCCeEEEEEEeCCCC---CCHHH-HHHHHHHHHhhccc-cCCeEEEEEecCCC
Q 044972           82 KDGIHAVLIVFSVRNR---FSEEE-GAAIHSLESLFGKK-VFDYMIVVFTRGDE  130 (307)
Q Consensus        82 ~pGpha~LLVl~~~~R---fT~ee-~~~l~~i~~~FG~~-~~~~~IVLfT~~D~  130 (307)
                      ....+++|+|+++.+.   -+-++ ......|.. +.+. .-+..|||+|+.|.
T Consensus       234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~-y~~~L~~kP~IVV~NK~DL  286 (424)
T PRK12297        234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKL-YNPRLLERPQIVVANKMDL  286 (424)
T ss_pred             HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhh-hchhccCCcEEEEEeCCCC
Confidence            2467999999998521   12222 333344444 3333 45789999999994

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.95  E-value=1.2e-08  Score=108.33  Aligned_cols=144  Identities=11%  Similarity=-0.019  Sum_probs=92.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC-H-HHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD-F-EFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~-~-~~i~~eI~kcv~   79 (307)
                      .+|.|||||||+.|.+.|.+...+.  ..++|.+...+...+ ++..+.+||||   |.++.... . ....+.+.+ ..
T Consensus         8 LvG~pNvGKSTLfN~Ltg~~~~vgn--~pGvTve~k~g~~~~-~~~~i~lvDtP---G~ysl~~~~~~~s~~E~i~~-~~   80 (772)
T PRK09554          8 LIGNPNSGKTTLFNQLTGARQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLP---GTYSLTTISSQTSLDEQIAC-HY   80 (772)
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCC--CCCceEeeEEEEEEc-CceEEEEEECC---CccccccccccccHHHHHHH-HH
Confidence            3799999999999999998764432  246676666667777 88999999999   98864321 1 122223332 22


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      +....+|++++|++.. .+.. .......+.+     .-.++|+++|+.|..+..  .+.        ..++.+-+..|-
T Consensus        81 l~~~~aD~vI~VvDat-~ler-~l~l~~ql~e-----~giPvIvVlNK~Dl~~~~--~i~--------id~~~L~~~LG~  143 (772)
T PRK09554         81 ILSGDADLLINVVDAS-NLER-NLYLTLQLLE-----LGIPCIVALNMLDIAEKQ--NIR--------IDIDALSARLGC  143 (772)
T ss_pred             HhccCCCEEEEEecCC-cchh-hHHHHHHHHH-----cCCCEEEEEEchhhhhcc--CcH--------HHHHHHHHHhCC
Confidence            3356799999999986 4432 2223333333     246899999999976442  111        124455556676


Q ss_pred             eEEEEcCCCC
Q 044972          160 RRVLFDNKTK  169 (307)
Q Consensus       160 R~~~fnNk~~  169 (307)
                      .++.++-+..
T Consensus       144 pVvpiSA~~g  153 (772)
T PRK09554        144 PVIPLVSTRG  153 (772)
T ss_pred             CEEEEEeecC
Confidence            7776665543

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.95  E-value=4.4e-08  Score=82.10  Aligned_cols=138  Identities=13%  Similarity=0.036  Sum_probs=78.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+. .... ...++.........+ +|  ..+.++|||   |..       ......    .
T Consensus         5 v~G~~~~GKTtli~~l~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~D~~---G~~-------~~~~~~----~   67 (164)
T smart00175        5 LIGDSGVGKSSLLSRFTDGKF-SEQY-KSTIGVDFKTKTIEV-DGKRVKLQIWDTA---GQE-------RFRSIT----S   67 (164)
T ss_pred             EECCCCCCHHHHHHHHhcCCC-CCCC-CCceeeEEEEEEEEE-CCEEEEEEEEECC---ChH-------HHHHHH----H
Confidence            479999999999999998864 2221 112222223334455 66  478899999   842       111111    2


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh--hccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL--FGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~--FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      ....+.|+++||+++.+.-|-++  +..++..+  +.. --..++|+.|+.|.....  .+       .....+.+.+.+
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~--~~-------~~~~~~~~~~~~  135 (164)
T smart00175       68 SYYRGAVGALLVYDITNRESFEN--LKNWLKELREYAD-PNVVIMLVGNKSDLEDQR--QV-------SREEAEAFAEEH  135 (164)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCC-CCCeEEEEEEchhccccc--CC-------CHHHHHHHHHHc
Confidence            23357899999999863222222  22232221  111 246899999999965421  10       112344556667


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +-.|+..+-+.
T Consensus       136 ~~~~~e~Sa~~  146 (164)
T smart00175      136 GLPFFETSAKT  146 (164)
T ss_pred             CCeEEEEeCCC
Confidence            76666666544

Rab GTPases are implicated in vesicle trafficking.

>cd04157 Arl6 Arl6 subfamily

Probab=98.95  E-value=1.6e-08  Score=84.71  Aligned_cols=113  Identities=10%  Similarity=-0.087  Sum_probs=68.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+.+...|.....   .|.........+ ++..+.++|||   |....           ........
T Consensus         5 vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~---G~~~~-----------~~~~~~~~   66 (162)
T cd04157           5 VGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMS---GQGKY-----------RGLWEHYY   66 (162)
T ss_pred             ECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECC---CCHhh-----------HHHHHHHH
Confidence            69999999999999999764443222   222232333445 78899999999   86421           11112234


Q ss_pred             CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc-ccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK-KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.+++|||+++..+.+-.. ...+..+....+- ..-.+++||+|+.|....
T Consensus        67 ~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence            68999999999863332111 1122223221111 124579999999997543

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01889 SelB_euk SelB subfamily

Probab=98.95  E-value=9e-09  Score=90.43  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=70.0

Q ss_pred             CCCCCCcHHHHHHHHHCCC---cccccc--CCCCCCceeEEEEEEEeC--------------CeEEEEEeCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRR---AFKSKV--GSSEDTKTCEMQRTMLKD--------------GQVVNVIDTPAIARLFDS   63 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~---~F~s~~--s~~svT~~c~~~~~~~~~--------------Gr~v~VIDTP~~~Gl~Dt   63 (307)
                      +|++|+||||++|.+++..   .|....  ...+.|..+......+ .              +..++++|||   |..  
T Consensus         6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dtp---G~~--   79 (192)
T cd01889           6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYV-DKPKHLRELINPGEENLQITLVDCP---GHA--   79 (192)
T ss_pred             EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEe-cccccccccccccccCceEEEEECC---CcH--
Confidence            6999999999999999842   121100  0112344444344444 3              7799999999   963  


Q ss_pred             CcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           64 SADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        64 ~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                           .    +.+.+......+|++++|+++....+..+...+... ..+    ..+.+|++|+.|....
T Consensus        80 -----~----~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          80 -----S----LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EIL----CKKLIVVLNKIDLIPE  135 (192)
T ss_pred             -----H----HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHc----CCCEEEEEECcccCCH
Confidence                 1    222233344678999999998755655554444332 222    2478999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK04213 GTP-binding protein; Provisional

Probab=98.94  E-value=2e-08  Score=88.40  Aligned_cols=116  Identities=17%  Similarity=0.090  Sum_probs=69.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC----HHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD----FEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~----~~~i~~eI~kcv   78 (307)
                      +|.+||||||++|.|.|.. |..... .++|..+.  ...+ +  .+.++|||   |+.+....    .+.+...+..++
T Consensus        15 ~G~~~~GKSsLin~l~~~~-~~~~~~-~~~t~~~~--~~~~-~--~~~l~Dt~---G~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T PRK04213         15 VGRSNVGKSTLVRELTGKK-VRVGKR-PGVTRKPN--HYDW-G--DFILTDLP---GFGFMSGVPKEVQEKIKDEIVRYI   84 (201)
T ss_pred             ECCCCCCHHHHHHHHhCCC-CccCCC-CceeeCce--EEee-c--ceEEEeCC---ccccccccCHHHHHHHHHHHHHHH
Confidence            5999999999999999986 543322 23444332  2333 3  79999999   87543321    122333333333


Q ss_pred             HhcCCCCeEEEEEEeCCC------CC-----CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           79 GMAKDGIHAVLIVFSVRN------RF-----SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~------Rf-----T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .....+++++++|++...      ++     ...+...+..+..     .-...+||+|+.|....
T Consensus        85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~  145 (201)
T PRK04213         85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKN  145 (201)
T ss_pred             HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCc
Confidence            334567899999998752      11     1123333333332     23578999999996543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.94  E-value=1e-08  Score=96.21  Aligned_cols=110  Identities=16%  Similarity=0.104  Sum_probs=76.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccc----------------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSK----------------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~----------------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|.+|+||||+.|.||...--...                .-..+.|..+......| .+.++++||||   |..|    
T Consensus         5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTP---G~~d----   76 (270)
T cd01886           5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTP---GHVD----   76 (270)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECC---CcHH----
Confidence            699999999999999842110000                01124555666677789 99999999999   9765    


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                         ...++..++    ...|++|||+++.......+...+..+..     .-...||++++.|...
T Consensus        77 ---f~~~~~~~l----~~aD~ailVVDa~~g~~~~t~~~~~~~~~-----~~~p~ivviNK~D~~~  130 (270)
T cd01886          77 ---FTIEVERSL----RVLDGAVAVFDAVAGVEPQTETVWRQADR-----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             ---HHHHHHHHH----HHcCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence               222333333    45689999999875677777777766654     2356789999999764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.93  E-value=1.8e-08  Score=85.21  Aligned_cols=114  Identities=10%  Similarity=-0.073  Sum_probs=70.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC--CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG--SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s--~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.|++......+..  ....|.........+ ++..+.++|||   |..+-           ......
T Consensus         5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~-----------~~~~~~   69 (167)
T cd04160           5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLG---GQESL-----------RSLWDK   69 (167)
T ss_pred             EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECC---CChhh-----------HHHHHH
Confidence            69999999999999988532211111  112344444556677 88999999999   97431           111222


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      ...++|+++||+++.+.-  .-.....++..++...  .-.++||+.|+.|....
T Consensus        70 ~~~~~~~~v~vvd~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          70 YYAECHAIIYVIDSTDRE--RFEESKSALEKVLRNEALEGVPLLILANKQDLPDA  122 (167)
T ss_pred             HhCCCCEEEEEEECchHH--HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence            356899999999876221  1222334444444321  23579999999996543

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.93  E-value=1.2e-08  Score=98.43  Aligned_cols=119  Identities=13%  Similarity=0.123  Sum_probs=74.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|.|||||||++|.|.+.+.-.+..  ...|.........+ ++ ..++|+|||   |+.+.......+.....+.+   
T Consensus       163 vG~pnaGKSTLl~~lt~~~~~va~y--~fTT~~p~ig~v~~-~~~~~~~i~D~P---Gli~~a~~~~gLg~~flrhi---  233 (329)
T TIGR02729       163 VGLPNAGKSTLISAVSAAKPKIADY--PFTTLVPNLGVVRV-DDGRSFVIADIP---GLIEGASEGAGLGHRFLKHI---  233 (329)
T ss_pred             EcCCCCCHHHHHHHHhcCCccccCC--CCCccCCEEEEEEe-CCceEEEEEeCC---CcccCCcccccHHHHHHHHH---
Confidence            7999999999999999876422221  12355566666677 55 999999999   98643222222333333322   


Q ss_pred             CCCCeEEEEEEeCCCCC----CHHHHHH-HHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRF----SEEEGAA-IHSLESLFGKK-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~Rf----T~ee~~~-l~~i~~~FG~~-~~~~~IVLfT~~D~L~~  133 (307)
                       .+.+++|+|+++. ..    +-++... .+.+.. +.+. .-+..|||+|+.|.+..
T Consensus       234 -erad~ll~VvD~s-~~~~~~~~e~l~~l~~EL~~-~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       234 -ERTRVLLHLIDIS-PLDGRDPIEDYEIIRNELKK-YSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             -HhhCEEEEEEcCc-cccccCHHHHHHHHHHHHHH-hhhhhccCCEEEEEeCccCCCh
Confidence             4578999999987 33    1122222 222322 3332 34689999999997654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK12735 elongation factor Tu; Reviewed

Probab=98.93  E-value=9e-09  Score=101.33  Aligned_cols=132  Identities=17%  Similarity=0.119  Sum_probs=84.3

Q ss_pred             CCCCCCCcHHHHHHHHHCC------Cccccc--------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972            2 CACEYIKICTTTGNSILGR------RAFKSK--------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF   67 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~------~~F~s~--------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~   67 (307)
                      -+|.+++|||||.|.|++.      ..|...        .-..+.|..+......+ +++++++||||   |..      
T Consensus        17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtP---Gh~------   86 (396)
T PRK12735         17 TIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCP---GHA------   86 (396)
T ss_pred             EECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECC---CHH------
Confidence            3799999999999999972      222100        00234555554444556 78899999999   852      


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCC
Q 044972           68 EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECP  147 (307)
Q Consensus        68 ~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~  147 (307)
                       +    +.+.+..+...+|++|||+++...+..+....+..+.. .|   ..++||++|+.|....  ..+.+.+.    
T Consensus        87 -~----f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~g---i~~iivvvNK~Dl~~~--~~~~~~~~----  151 (396)
T PRK12735         87 -D----YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VPYIVVFLNKCDMVDD--EELLELVE----  151 (396)
T ss_pred             -H----HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cC---CCeEEEEEEecCCcch--HHHHHHHH----
Confidence             2    22333344568999999999875577776666655442 23   4556678999998743  22333333    


Q ss_pred             chHHHHHHhcC
Q 044972          148 KPLKEILQLCD  158 (307)
Q Consensus       148 ~~Lk~Li~~Cg  158 (307)
                      ..+..+++.++
T Consensus       152 ~ei~~~l~~~~  162 (396)
T PRK12735        152 MEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHHHcC
Confidence            24677777765

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.92  E-value=3.5e-08  Score=81.19  Aligned_cols=110  Identities=18%  Similarity=0.061  Sum_probs=67.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.|.|.+ |....   ..|.......... ++..+.++|||   |...       .....    ....
T Consensus         5 ~G~~~~GKssl~~~l~~~~-~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~---g~~~-------~~~~~----~~~~   65 (159)
T cd04159           5 VGLQNSGKTTLVNVIAGGQ-FSEDT---IPTVGFNMRKVTK-GNVTLKVWDLG---GQPR-------FRSMW----ERYC   65 (159)
T ss_pred             EcCCCCCHHHHHHHHccCC-CCcCc---cCCCCcceEEEEE-CCEEEEEEECC---CCHh-------HHHHH----HHHH
Confidence            6999999999999999975 43222   1232233333445 67889999999   8532       11111    2234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .++|++|+|+++. ....- ......+..++-..  .-..++||+|+.|....
T Consensus        66 ~~~d~ii~v~d~~-~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  116 (159)
T cd04159          66 RGVNAIVYVVDAA-DRTAL-EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA  116 (159)
T ss_pred             hcCCEEEEEEECC-CHHHH-HHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence            6789999999886 32211 11223333333221  23468999999997654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04154 Arl2 Arl2 subfamily

Probab=98.92  E-value=1.6e-08  Score=86.83  Aligned_cols=109  Identities=13%  Similarity=0.073  Sum_probs=69.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.|+|.. |..    ...|.........+ ++..+.|+|||   |....       ...    .....
T Consensus        20 vG~~~~GKTsL~~~l~~~~-~~~----~~~t~g~~~~~~~~-~~~~l~l~D~~---G~~~~-------~~~----~~~~~   79 (173)
T cd04154          20 LGLDNAGKTTILKKLLGED-IDT----ISPTLGFQIKTLEY-EGYKLNIWDVG---GQKTL-------RPY----WRNYF   79 (173)
T ss_pred             ECCCCCCHHHHHHHHccCC-CCC----cCCccccceEEEEE-CCEEEEEEECC---CCHHH-------HHH----HHHHh
Confidence            6999999999999999874 221    12233333444566 88899999999   86421       111    11234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|+++||+++.++-+-+  ....++..++...  .-.+++||.|+.|..+.
T Consensus        80 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (173)
T cd04154          80 ESTDALIWVVDSSDRLRLD--DCKRELKELLQEERLAGATLLILANKQDLPGA  130 (173)
T ss_pred             CCCCEEEEEEECCCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence            6899999999987431111  2233444444321  34689999999997543

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.91  E-value=1.1e-08  Score=100.86  Aligned_cols=131  Identities=17%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             CCCCCCcHHHHHHHHHCCC-------ccccc-------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGRR-------AFKSK-------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-------~F~s~-------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+++|||||.+.|++..       .+.+.       .-..+.|..+......+ +++++++||||   |..       
T Consensus        18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtP---G~~-------   86 (396)
T PRK00049         18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCP---GHA-------   86 (396)
T ss_pred             EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECC---CHH-------
Confidence            6999999999999999831       11000       00234555554444556 78899999999   863       


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                      +    +...+..+..++|++|||+++...++.+++..+..+.. +|   ..++||++|++|....  ..+.+.+.    .
T Consensus        87 ~----f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~-~g---~p~iiVvvNK~D~~~~--~~~~~~~~----~  152 (396)
T PRK00049         87 D----YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VPYIVVFLNKCDMVDD--EELLELVE----M  152 (396)
T ss_pred             H----HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH-cC---CCEEEEEEeecCCcch--HHHHHHHH----H
Confidence            2    22333344568999999999875678888777776654 33   3456678999998743  22323332    2


Q ss_pred             hHHHHHHhcC
Q 044972          149 PLKEILQLCD  158 (307)
Q Consensus       149 ~Lk~Li~~Cg  158 (307)
                      .+..++..++
T Consensus       153 ~i~~~l~~~~  162 (396)
T PRK00049        153 EVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhcC
Confidence            4677777765

>cd01863 Rab18 Rab18 subfamily

Probab=98.91  E-value=1.2e-08  Score=85.85  Aligned_cols=112  Identities=13%  Similarity=0.032  Sum_probs=64.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      ++|++||||||++|.+++.. |.....+ ..+.+.......+ ++  ..+.++|||   |.....       ..    ..
T Consensus         5 v~G~~~~GKSsli~~l~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~---g~~~~~-------~~----~~   67 (161)
T cd01863           5 LIGDSGVGKSSLLLRFTDDT-FDPDLAA-TIGVDFKVKTLTV-DGKKVKLAIWDTA---GQERFR-------TL----TS   67 (161)
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCcccCC-cccceEEEEEEEE-CCEEEEEEEEECC---Cchhhh-------hh----hH
Confidence            57999999999999999876 3322111 1222222223334 44  478999999   853211       11    11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ....+.|++|+|+++.++-+-+... .+..+... ....-...+||.|+.|..
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETY-STNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHh-CCCCCCcEEEEEECCccc
Confidence            2235789999999986322222211 22223332 223345578889999876

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.91  E-value=8.7e-09  Score=90.47  Aligned_cols=109  Identities=17%  Similarity=0.117  Sum_probs=77.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccc----------------cCCCCCCceeEEEEEE--EeCCeEEEEEeCCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSK----------------VGSSEDTKTCEMQRTM--LKDGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~----------------~s~~svT~~c~~~~~~--~~~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      +|++|+|||||.+.|++.......                ......|.........  . +++.+++||||   |..   
T Consensus         9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtP---G~~---   81 (188)
T PF00009_consen    9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTP---GHE---   81 (188)
T ss_dssp             EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEES---SSH---
T ss_pred             ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccc---ccc---
Confidence            699999999999999976422110                0012344444445555  6 89999999999   852   


Q ss_pred             cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                          +...++..+    ...+|++|||+++...++......+..+...     -..+||++|+.|.+
T Consensus        82 ----~f~~~~~~~----~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~  135 (188)
T PF00009_consen   82 ----DFIKEMIRG----LRQADIAILVVDANDGIQPQTEEHLKILREL-----GIPIIVVLNKMDLI  135 (188)
T ss_dssp             ----HHHHHHHHH----HTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred             ----ceeecccce----ecccccceeeeeccccccccccccccccccc-----ccceEEeeeeccch
Confidence                344455544    3468999999998767888888888887653     34599999999998

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PLN03127 Elongation factor Tu; Provisional

Probab=98.90  E-value=1.4e-08  Score=101.75  Aligned_cols=131  Identities=15%  Similarity=0.135  Sum_probs=86.7

Q ss_pred             CCCCCCcHHHHHHHHHC------CCc-cccc-------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILG------RRA-FKSK-------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG------~~~-F~s~-------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+++|||||.|.|+|      +.. +.+.       ....+.|..+......+ +++++++||||   |..+      
T Consensus        67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtP---Gh~~------  136 (447)
T PLN03127         67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCP---GHAD------  136 (447)
T ss_pred             ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECC---Cccc------
Confidence            69999999999999984      321 1110       01145666666566666 88999999999   9743      


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                       ....+..    ....+|++|||+++...++.+++..+..+..+ |   ..+.||++|++|.++.  ..+.+.+.    .
T Consensus       137 -f~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-g---ip~iIvviNKiDlv~~--~~~~~~i~----~  201 (447)
T PLN03127        137 -YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G---VPSLVVFLNKVDVVDD--EELLELVE----M  201 (447)
T ss_pred             -hHHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCeEEEEEEeeccCCH--HHHHHHHH----H
Confidence             1222222    23469999999998756788888777776643 2   4567889999998754  23334343    2


Q ss_pred             hHHHHHHhcC
Q 044972          149 PLKEILQLCD  158 (307)
Q Consensus       149 ~Lk~Li~~Cg  158 (307)
                      .+++++..++
T Consensus       202 ~i~~~l~~~~  211 (447)
T PLN03127        202 ELRELLSFYK  211 (447)
T ss_pred             HHHHHHHHhC
Confidence            4667776654

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.90  E-value=4e-08  Score=84.47  Aligned_cols=140  Identities=14%  Similarity=0.009  Sum_probs=80.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||++|.+.|.  |.....   .|.........+ ++..+.++|||   |-..       .. .+   ....
T Consensus         4 ~~G~~~~GKTsl~~~l~~~--~~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~---G~~~-------~~-~~---~~~~   63 (167)
T cd04161           4 TVGLDNAGKTTLVSALQGE--IPKKVA---PTVGFTPTKLRL-DKYEVCIFDLG---GGAN-------FR-GI---WVNY   63 (167)
T ss_pred             EECCCCCCHHHHHHHHhCC--CCcccc---CcccceEEEEEE-CCEEEEEEECC---CcHH-------HH-HH---HHHH
Confidence            4799999999999999987  543222   222233344556 78899999999   8421       11 11   1223


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ..+.|+++||+++.++-+-  ..+..++..++...  .-.+++||.|+.|....  .+..+.+..   -.+..+.+..+.
T Consensus        64 ~~~a~~ii~V~D~s~~~s~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~---~~l~~~~~~~~~  136 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRV--QEVKEILRELLQHPRVSGKPILVLANKQDKKNA--LLGADVIEY---LSLEKLVNENKS  136 (167)
T ss_pred             HcCCCEEEEEEECCchhHH--HHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCHHHHHHh---cCcccccCCCCc
Confidence            4688999999998633221  22233444444332  23578999999986543  333333321   123444444455


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .++++.-.+
T Consensus       137 ~~~~~~~Sa  145 (167)
T cd04161         137 LCHIEPCSA  145 (167)
T ss_pred             eEEEEEeEc
Confidence            556664433

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.90  E-value=1.3e-08  Score=92.90  Aligned_cols=102  Identities=14%  Similarity=-0.022  Sum_probs=69.6

Q ss_pred             CCCCCCCcHHHHHHHHHCC-CccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGR-RAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~-~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      -+|++++|||+++|.|+|. ..|..+....++|+........++  .+..|++||||   |++|+..+.......+. ++
T Consensus        12 v~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDte---G~~~~~~~~~~~~~~~~-~l   87 (224)
T cd01851          12 VFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTE---GTDGRERGEFEDDARLF-AL   87 (224)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecC---CcCccccCchhhhhHHH-HH
Confidence            4799999999999999998 579887776777776655554442  25799999999   99998765411111111 11


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES  111 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~  111 (307)
                      ...  =.+++|+.+..  .....+...+..+.+
T Consensus        88 ~~l--lss~~i~n~~~--~~~~~~~~~l~~~~~  116 (224)
T cd01851          88 ATL--LSSVLIYNSWE--TILGDDLAALMGLLK  116 (224)
T ss_pred             HHH--HhCEEEEeccC--cccHHHHHHHHHHHH
Confidence            110  14577777764  567777777766655

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01866 Rab2 Rab2 subfamily

Probab=98.90  E-value=1.9e-08  Score=86.01  Aligned_cols=113  Identities=12%  Similarity=-0.009  Sum_probs=64.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+ |....+. ..+.+-......+ +|  ..+.|+|||   |..       .    +..-..
T Consensus         9 vvG~~~vGKSsLl~~l~~~~-~~~~~~~-t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~-------~----~~~~~~   71 (168)
T cd01866           9 IIGDTGVGKSCLLLQFTDKR-FQPVHDL-TIGVEFGARMITI-DGKQIKLQIWDTA---GQE-------S----FRSITR   71 (168)
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCCCCC-ccceeEEEEEEEE-CCEEEEEEEEECC---CcH-------H----HHHHHH
Confidence            47999999999999999876 3222221 1111111222334 44  478999999   831       1    111122


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~  133 (307)
                      ....++|++|||+++.++-+  -..+..++..+-.. ..-..+|||.|+.|....
T Consensus        72 ~~~~~~d~il~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~  124 (168)
T cd01866          72 SYYRGAAGALLVYDITRRET--FNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR  124 (168)
T ss_pred             HHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence            33468999999999863222  12222333322111 123468999999987643

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04113 Rab4 Rab4 subfamily

Probab=98.90  E-value=3.7e-08  Score=82.90  Aligned_cols=140  Identities=13%  Similarity=0.022  Sum_probs=79.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+ |....++ ..+.........+ +|  ..+.++|||   |...       .. .+.   .
T Consensus         5 v~G~~~vGKTsli~~l~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~l~D~~---G~~~-------~~-~~~---~   67 (161)
T cd04113           5 IIGSSGTGKSCLLHRFVENK-FKEDSQH-TIGVEFGSKIIRV-GGKRVKLQIWDTA---GQER-------FR-SVT---R   67 (161)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCCCCCC-ceeeeEEEEEEEE-CCEEEEEEEEECc---chHH-------HH-HhH---H
Confidence            36999999999999999875 3322211 1221122223344 55  367899999   8522       11 111   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....++|++|+|+++.++-+-+. ...+..++...+++  ..++|+.|+.|.....  .+       .......+....+
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~--~~-------~~~~~~~~~~~~~  136 (161)
T cd04113          68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQR--EV-------TFLEASRFAQENG  136 (161)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhc--cC-------CHHHHHHHHHHcC
Confidence            23457999999999874333222 22233334343333  4689999999976431  11       1223455566666


Q ss_pred             CeEEEEcCCCC
Q 044972          159 NRRVLFDNKTK  169 (307)
Q Consensus       159 ~R~~~fnNk~~  169 (307)
                      -.|+-.+-++.
T Consensus       137 ~~~~~~Sa~~~  147 (161)
T cd04113         137 LLFLETSALTG  147 (161)
T ss_pred             CEEEEEECCCC
Confidence            66666665543

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.89  E-value=7.1e-09  Score=98.66  Aligned_cols=121  Identities=15%  Similarity=0.107  Sum_probs=78.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH-HHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDGQVVNVIDTPAIARLFDSSADFEF-VSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~-i~~eI~kcv~l   80 (307)
                      .|.||+||||+.|.++|.++|.+  |.+.-|++|+ .+..+- +..+++++|||   |+-.+...... ....+..-..-
T Consensus        78 IG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts-~eTQlvf~DTP---Glvs~~~~r~~~l~~s~lq~~~~  151 (379)
T KOG1423|consen   78 IGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITS-GETQLVFYDTP---GLVSKKMHRRHHLMMSVLQNPRD  151 (379)
T ss_pred             EcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEec-CceEEEEecCC---cccccchhhhHHHHHHhhhCHHH
Confidence            59999999999999999999875  4566677774 455555 77899999999   99876532221 11122223344


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +....|++++|+++.+.=+.-.-..+..+..+    ..-..|+|.+..|.+..
T Consensus       152 a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y----s~ips~lvmnkid~~k~  200 (379)
T KOG1423|consen  152 AAQNADCVVVVVDASATRTPLHPRVLHMLEEY----SKIPSILVMNKIDKLKQ  200 (379)
T ss_pred             HHhhCCEEEEEEeccCCcCccChHHHHHHHHH----hcCCceeeccchhcchh
Confidence            45568899999988632222233445555543    23356666666665543

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.89  E-value=9.6e-09  Score=101.70  Aligned_cols=132  Identities=12%  Similarity=0.159  Sum_probs=85.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+++|||||.|.||+.....+..                             -..+.|..+......+ ++..+++||
T Consensus        12 iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~~~i~liD   90 (425)
T PRK12317         12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DKYYFTIVD   90 (425)
T ss_pred             ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CCeEEEEEE
Confidence            6999999999999999553322110                             0346788887778888 999999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCC--CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRN--RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~--RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ||   |..+.       ...+.    ....++|++|||+++..  .+..+....+..+. .+|   ..+.||++|+.|..
T Consensus        91 tp---G~~~~-------~~~~~----~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~---~~~iivviNK~Dl~  152 (425)
T PRK12317         91 CP---GHRDF-------VKNMI----TGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG---INQLIVAINKMDAV  152 (425)
T ss_pred             CC---Ccccc-------hhhHh----hchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC---CCeEEEEEEccccc
Confidence            99   95321       11121    22357999999999875  45555555554443 344   25789999999976


Q ss_pred             CCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972          132 EDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       132 ~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ......++. +    ...++.+++.+|
T Consensus       153 ~~~~~~~~~-~----~~~i~~~l~~~g  174 (425)
T PRK12317        153 NYDEKRYEE-V----KEEVSKLLKMVG  174 (425)
T ss_pred             cccHHHHHH-H----HHHHHHHHHhhC
Confidence            421111221 1    224666776665

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.89  E-value=2.2e-08  Score=92.17  Aligned_cols=133  Identities=20%  Similarity=0.140  Sum_probs=85.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|.+||||||+.|.||..........                ....|-........| ++..+++||||   |..+.   
T Consensus         5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTP---G~~~f---   77 (237)
T cd04168           5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTP---GHMDF---   77 (237)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCC---Cccch---
Confidence            69999999999999997533221110                011222334455678 89999999999   98652   


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPEC  146 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~  146 (307)
                          ..++..+    ..+.|+++||+++...+.......+..+.. .    -...+|++|+.|....   ..+       
T Consensus        78 ----~~~~~~~----l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~----~~P~iivvNK~D~~~a---~~~-------  134 (237)
T cd04168          78 ----IAEVERS----LSVLDGAILVISAVEGVQAQTRILWRLLRK-L----NIPTIIFVNKIDRAGA---DLE-------  134 (237)
T ss_pred             ----HHHHHHH----HHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-c----CCCEEEEEECccccCC---CHH-------
Confidence                1223332    246799999999876666655555555543 2    3467899999996543   222       


Q ss_pred             CchHHHHHHhcCCeEEEEcC
Q 044972          147 PKPLKEILQLCDNRRVLFDN  166 (307)
Q Consensus       147 ~~~Lk~Li~~Cg~R~~~fnN  166 (307)
                       ..+.++-+.++.+.+.+.-
T Consensus       135 -~~~~~i~~~~~~~~~~~~~  153 (237)
T cd04168         135 -KVYQEIKEKLSSDIVPMQK  153 (237)
T ss_pred             -HHHHHHHHHHCCCeEEEEC
Confidence             2455666777777777763

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04140 ARHI_like ARHI subfamily

Probab=98.89  E-value=1.6e-08  Score=86.06  Aligned_cols=114  Identities=13%  Similarity=0.031  Sum_probs=68.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+++.+ |.....+...+.......... ....+.++|||   |.....    .+    .   ....
T Consensus         7 vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~---G~~~~~----~~----~---~~~~   70 (165)
T cd04140           7 FGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTYRQVISCSK-NICTLQITDTT---GSHQFP----AM----Q---RLSI   70 (165)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCcCCcchheEEEEEEECC-EEEEEEEEECC---CCCcch----HH----H---HHHh
Confidence            7999999999999999876 532221111111111111112 23467899999   875321    11    1   1234


Q ss_pred             CCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccc-cCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKK-VFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~  132 (307)
                      .+.|++|||+++.++-+-+. ...+..+....+.. .-..+|||.|+.|...
T Consensus        71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            57899999999875444433 33455566665543 2347889999998754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.89  E-value=1.4e-08  Score=89.43  Aligned_cols=111  Identities=15%  Similarity=0.111  Sum_probs=70.5

Q ss_pred             CCCCCCcHHHHHHHHHCC-CccccccC-------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGR-RAFKSKVG-------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~-~~F~s~~s-------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+||||||++|.+++. ..|.....             ..+.|..+......+ ++..+.++|||   |..+      
T Consensus         8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~Dtp---G~~~------   77 (194)
T cd01891           8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTP---GHAD------   77 (194)
T ss_pred             EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECC---CcHH------
Confidence            699999999999999974 34543321             123333444445566 78899999999   9743      


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                       ....+.    ....++|++++|+++...........+..+..     .-...+||+|+.|....
T Consensus        78 -~~~~~~----~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~  132 (194)
T cd01891          78 -FGGEVE----RVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-----LGLKPIVVINKIDRPDA  132 (194)
T ss_pred             -HHHHHH----HHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence             112222    23457899999999874443433333333222     23468899999997643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=6.8e-07  Score=87.15  Aligned_cols=151  Identities=15%  Similarity=0.212  Sum_probs=95.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCcccc----ccCCC-CCCceeEEEEEEE-eCC--eEEEEEeCCCCCCCCCCCcC---H---
Q 044972            2 CACEYIKICTTTGNSILGRRAFKS----KVGSS-EDTKTCEMQRTML-KDG--QVVNVIDTPAIARLFDSSAD---F---   67 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s----~~s~~-svT~~c~~~~~~~-~~G--r~v~VIDTP~~~Gl~Dt~~~---~---   67 (307)
                      +||+.|.||||++|||++......    ..+.. ..|.........+ ++|  -.++|||||   ||.|.-..   -   
T Consensus        26 vvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtP---GfGD~vdns~~w~pi  102 (366)
T KOG2655|consen   26 VVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTP---GFGDAVDNSNCWRPI  102 (366)
T ss_pred             EecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccC---CCcccccccccchhh
Confidence            689999999999999999853321    01111 1133333333333 144  488999999   99874211   1   


Q ss_pred             -HHHHHHHHHHHH---------hcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcc
Q 044972           68 -EFVSKEIVKCIG---------MAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDE  136 (307)
Q Consensus        68 -~~i~~eI~kcv~---------ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~  136 (307)
                       ..+.......+.         .....+|+.|+-++.. ..+.+-|...++.+..      .-++|-|+.++|.|..  .
T Consensus       103 ~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~------~vNiIPVI~KaD~lT~--~  174 (366)
T KOG2655|consen  103 VNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK------KVNLIPVIAKADTLTK--D  174 (366)
T ss_pred             hHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc------cccccceeeccccCCH--H
Confidence             112222222222         1122789999999753 3589999888888875      4588999999999976  4


Q ss_pred             cHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972          137 TLEDYLGPECPKPLKEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       137 sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~  168 (307)
                      -+..|-.     .+.+.|..+.=+++.|.--.
T Consensus       175 El~~~K~-----~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  175 ELNQFKK-----RIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             HHHHHHH-----HHHHHHHHcCcceecCCCCc
Confidence            4444432     35666777777777776543

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.88  E-value=2.7e-08  Score=80.92  Aligned_cols=113  Identities=17%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||+.|.|++.. |..... .+.|.......... ++  ..+.++|||   |..+..    ....       
T Consensus         6 ~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~---G~~~~~----~~~~-------   68 (161)
T TIGR00231         6 IVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTA---GQEDYR----AIRR-------   68 (161)
T ss_pred             EECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECC---Ccccch----HHHH-------
Confidence            37999999999999999998 654332 34455555544566 77  788999999   853321    1111       


Q ss_pred             hcCCCCeEEEEEEeCCC---CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRN---RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~---RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ......+++++++++..   .++.........+.... .. -..++|++|+.|....
T Consensus        69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~-~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ES-NVPIILVGNKIDLRDA  123 (161)
T ss_pred             HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-cc-CCcEEEEEEcccCCcc
Confidence            11123345555554431   12222222333333332 21 4468999999998654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.87  E-value=2.6e-08  Score=100.94  Aligned_cols=121  Identities=10%  Similarity=0.004  Sum_probs=75.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|.|.+.+.-.+..  ...|.....+...+ ++..++|+|||   ||.+.......+..+..+.    .
T Consensus       165 VG~PNAGKSTLln~Ls~akpkIady--pfTTl~P~lGvv~~-~~~~f~laDtP---Gliegas~g~gLg~~fLrh----i  234 (500)
T PRK12296        165 VGFPSAGKSSLISALSAAKPKIADY--PFTTLVPNLGVVQA-GDTRFTVADVP---GLIPGASEGKGLGLDFLRH----I  234 (500)
T ss_pred             EEcCCCCHHHHHHHHhcCCcccccc--CcccccceEEEEEE-CCeEEEEEECC---CCccccchhhHHHHHHHHH----H
Confidence            6999999999999999976543322  23455556666677 78899999999   9975332222233333322    2


Q ss_pred             CCCeEEEEEEeCCC----CCCHHHHHHHH-HHHHhhc---------cccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRN----RFSEEEGAAIH-SLESLFG---------KKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~----RfT~ee~~~l~-~i~~~FG---------~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+++|+|+++.+    +-.-++...+. .|..+.-         .-..+..|||+|+.|..+.
T Consensus       235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da  299 (500)
T PRK12296        235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA  299 (500)
T ss_pred             HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence            45789999999852    11112222222 2332221         2245789999999997543

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.87  E-value=5.4e-08  Score=81.69  Aligned_cols=109  Identities=11%  Similarity=-0.062  Sum_probs=68.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.++|.. +...    ..|.........+ ++..+.++|||   |...-    ..       ......
T Consensus         5 iG~~~~GKssli~~~~~~~-~~~~----~~t~~~~~~~~~~-~~~~~~i~D~~---G~~~~----~~-------~~~~~~   64 (158)
T cd00878           5 LGLDGAGKTTILYKLKLGE-VVTT----IPTIGFNVETVEY-KNVSFTVWDVG---GQDKI----RP-------LWKHYY   64 (158)
T ss_pred             EcCCCCCHHHHHHHHhcCC-CCCC----CCCcCcceEEEEE-CCEEEEEEECC---CChhh----HH-------HHHHHh
Confidence            6999999999999999987 3322    2222333344556 78899999999   85421    11       112233


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|+|+++.++  ..-..+...+..++..  ..-..++|+.|+.|....
T Consensus        65 ~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~  115 (158)
T cd00878          65 ENTNGIIFVVDSSDR--ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA  115 (158)
T ss_pred             ccCCEEEEEEECCCH--HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence            567999999998622  1111223334443332  134588999999997764

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.86  E-value=5e-08  Score=101.34  Aligned_cols=112  Identities=21%  Similarity=0.204  Sum_probs=76.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCc--cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRA--FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~--F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+++||||++|.+.|.+.  |... ...+.|..........++|+.+.+||||   |.       +...    +.+..
T Consensus         6 ~GhvdhGKTtLi~aLtg~~~dr~~eE-~~rGiTI~l~~~~~~~~~g~~i~~IDtP---Gh-------e~fi----~~m~~   70 (614)
T PRK10512          6 AGHVDHGKTTLLQAITGVNADRLPEE-KKRGMTIDLGYAYWPQPDGRVLGFIDVP---GH-------EKFL----SNMLA   70 (614)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccchhc-ccCCceEEeeeEEEecCCCcEEEEEECC---CH-------HHHH----HHHHH
Confidence            79999999999999999642  3211 1124454443333334478899999999   85       2222    22334


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...++|++|||++++..+.++....+..+. .+|   ..+.|||+|+.|..+.
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~-~lg---i~~iIVVlNKiDlv~~  119 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQ-LTG---NPMLTVALTKADRVDE  119 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CCeEEEEEECCccCCH
Confidence            456899999999998667787777776554 344   4567899999998754

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.86  E-value=3.9e-08  Score=87.81  Aligned_cols=113  Identities=13%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEe--------------------------CC------eEE
Q 044972            3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLK--------------------------DG------QVV   49 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~--------------------------~G------r~v   49 (307)
                      +|+.|+||||+...|.|... +.......+.|-.|......|.                          .|      +.+
T Consensus         6 ~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (203)
T cd01888           6 IGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHV   85 (203)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEE
Confidence            69999999999999988621 2111111122222222221220                          13      899


Q ss_pred             EEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 044972           50 NVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-FSEEEGAAIHSLESLFGKKVFDYMIVVFTRG  128 (307)
Q Consensus        50 ~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~  128 (307)
                      ++||||   |-       +.    +...+..+..++|++|||+++... ...+....+..+.. .|   ..++|||+|+.
T Consensus        86 ~~iDtP---G~-------~~----~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivvNK~  147 (203)
T cd01888          86 SFVDCP---GH-------EI----LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQNKI  147 (203)
T ss_pred             EEEECC---Ch-------HH----HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEEEch
Confidence            999999   83       22    333344455688999999998732 33343444444422 22   25789999999


Q ss_pred             CCCCC
Q 044972          129 DELED  133 (307)
Q Consensus       129 D~L~~  133 (307)
                      |....
T Consensus       148 Dl~~~  152 (203)
T cd01888         148 DLVKE  152 (203)
T ss_pred             hccCH
Confidence            97653

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.86  E-value=3e-08  Score=92.12  Aligned_cols=111  Identities=17%  Similarity=0.126  Sum_probs=69.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC----------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS----------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~----------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|.+||||||+.|.|++..........                ...|-........| ++..+++||||   |..+    
T Consensus         5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtP---G~~~----   76 (268)
T cd04170           5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTP---GYAD----   76 (268)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECc---CHHH----
Confidence            699999999999999864321111000                01122223445677 89999999999   8753    


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                         ...++..++    ...|++|+|+++...........+..+..     .-...+|++|+.|....
T Consensus        77 ---f~~~~~~~l----~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-----~~~p~iivvNK~D~~~~  131 (268)
T cd04170          77 ---FVGETRAAL----RAADAALVVVSAQSGVEVGTEKLWEFADE-----AGIPRIIFINKMDRERA  131 (268)
T ss_pred             ---HHHHHHHHH----HHCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECCccCCC
Confidence               122233333    36789999999875555554555554432     23468889999997643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04123 Rab21 Rab21 subfamily

Probab=98.86  E-value=2.9e-08  Score=82.69  Aligned_cols=113  Identities=12%  Similarity=-0.011  Sum_probs=66.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|++++...-..  ...+.+.........+ .|.  .+.++|||   |-...           .....
T Consensus         5 i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~---g~~~~-----------~~~~~   67 (162)
T cd04123           5 LLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNI-GGKRIDLAIWDTA---GQERY-----------HALGP   67 (162)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEE-CCEEEEEEEEECC---chHHH-----------HHhhH
Confidence            369999999999999998763221  1112222232333344 454  68899999   83211           11111


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|+|+++.++-+-++. ..+..+......  -..++||+|+.|....
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~  120 (162)
T cd04123          68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ  120 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            223578999999998633222221 223344444333  4579999999997643

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.86  E-value=5.8e-08  Score=100.44  Aligned_cols=138  Identities=13%  Similarity=0.064  Sum_probs=86.6

Q ss_pred             CCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhcC
Q 044972            4 CEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         4 ~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls~   82 (307)
                      |.|||||||+.|.+.|.+. .++. ..++|.........+ +|.++.++|||   |..+... +.+   +.+.+- ....
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n-~pG~Tv~~~~~~i~~-~~~~i~lvDtP---G~~~~~~~s~~---e~v~~~-~l~~   70 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGN-WPGVTVEKKEGKLGF-QGEDIEIVDLP---GIYSLTTFSLE---EEVARD-YLLN   70 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecC-CCCeEEEEEEEEEEE-CCeEEEEEECC---CccccCccchH---HHHHHH-HHhh
Confidence            8999999999999999874 3332 335666666667778 89999999999   9876432 221   122221 1234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV  162 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~  162 (307)
                      .++|++++|++.. .+... ...+..+.+     .-..++|+.|+.|..+..  .+.        ...+.+-+..|-.++
T Consensus        71 ~~aDvvI~VvDat-~ler~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~~~--~i~--------~d~~~L~~~lg~pvv  133 (591)
T TIGR00437        71 EKPDLVVNVVDAS-NLERN-LYLTLQLLE-----LGIPMILALNLVDEAEKK--GIR--------IDEEKLEERLGVPVV  133 (591)
T ss_pred             cCCCEEEEEecCC-cchhh-HHHHHHHHh-----cCCCEEEEEehhHHHHhC--CCh--------hhHHHHHHHcCCCEE
Confidence            5799999999986 54322 222222222     246899999999975431  111        123455555665666


Q ss_pred             EEcCCC
Q 044972          163 LFDNKT  168 (307)
Q Consensus       163 ~fnNk~  168 (307)
                      ...-++
T Consensus       134 ~tSA~t  139 (591)
T TIGR00437       134 PTSATE  139 (591)
T ss_pred             EEECCC
Confidence            555544

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12736 elongation factor Tu; Reviewed

Probab=98.85  E-value=2.5e-08  Score=98.19  Aligned_cols=131  Identities=15%  Similarity=0.127  Sum_probs=85.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC------ccccc--------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGRR------AFKSK--------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~------~F~s~--------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+++|||||.+.|+|..      .|...        .-..+.|..+....... +++.+++||||   |..       
T Consensus        18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtP---Gh~-------   86 (394)
T PRK12736         18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCP---GHA-------   86 (394)
T ss_pred             EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECC---CHH-------
Confidence            6999999999999999731      11100        00234565554444555 78899999999   842       


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                      +....+.    .+..++|++|||+++...+..++...+..+..+ |   ..+.||++|++|....  ..+.+.+.    .
T Consensus        87 ~f~~~~~----~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g---~~~~IvviNK~D~~~~--~~~~~~i~----~  152 (394)
T PRK12736         87 DYVKNMI----TGAAQMDGAILVVAATDGPMPQTREHILLARQV-G---VPYLVVFLNKVDLVDD--EELLELVE----M  152 (394)
T ss_pred             HHHHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCEEEEEEEecCCcch--HHHHHHHH----H
Confidence            2223332    334578999999998755777777777766543 2   4568899999997643  33444443    2


Q ss_pred             hHHHHHHhcC
Q 044972          149 PLKEILQLCD  158 (307)
Q Consensus       149 ~Lk~Li~~Cg  158 (307)
                      .++.++...+
T Consensus       153 ~i~~~l~~~~  162 (394)
T PRK12736        153 EVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHhC
Confidence            4677777765

>cd04155 Arl3 Arl3 subfamily

Probab=98.85  E-value=7.4e-08  Score=82.02  Aligned_cols=109  Identities=13%  Similarity=-0.003  Sum_probs=66.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.|.|......     ..|.........+ +|..+.++|||   |...       ....    +....
T Consensus        20 ~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~---G~~~-------~~~~----~~~~~   79 (173)
T cd04155          20 LGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIG---GQRA-------IRPY----WRNYF   79 (173)
T ss_pred             EccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECC---CCHH-------HHHH----HHHHh
Confidence            69999999999999999753211     1233333345566 89999999999   8532       1122    22334


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++++|+++... . .-......+..++...  .-..++++.|+.|....
T Consensus        80 ~~~~~ii~v~D~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (173)
T cd04155          80 ENTDCLIYVIDSADK-K-RLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA  130 (173)
T ss_pred             cCCCEEEEEEeCCCH-H-HHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence            678999999988621 1 1111222333322221  23578888999987654

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04112 Rab26 Rab26 subfamily

Probab=98.85  E-value=1.3e-07  Score=82.93  Aligned_cols=140  Identities=11%  Similarity=-0.017  Sum_probs=78.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+ |.........+..-......+ +|.  .+.|+|||   |-.       ..    .....
T Consensus         5 vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~-------~~----~~~~~   68 (191)
T cd04112           5 LLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTA---GQE-------RF----RSVTH   68 (191)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCC---CcH-------HH----HHhhH
Confidence            37999999999999999876 432211111111111222344 553  77889999   831       11    11112


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++|||+++.++-+-++ ...+..+......  ..++||+.|+.|.....  .    +   .+...+.+....+
T Consensus        69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~--~----~---~~~~~~~l~~~~~  137 (191)
T cd04112          69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGER--V----V---KREDGERLAKEYG  137 (191)
T ss_pred             HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhcc--c----c---CHHHHHHHHHHcC
Confidence            23467899999999874322221 2233344443322  34788999999965431  1    1   1234566667666


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      ..|+-.+.++
T Consensus       138 ~~~~e~Sa~~  147 (191)
T cd04112         138 VPFMETSAKT  147 (191)
T ss_pred             CeEEEEeCCC
Confidence            6676665544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.85  E-value=5.5e-08  Score=81.00  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=64.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      ++|++||||||++|.+++.. |.....  +.+..-......+ +|..  +.++|||   |....    .    .+.   .
T Consensus         6 iiG~~~vGKTsl~~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~----~----~l~---~   67 (162)
T cd04138           6 VVGAGGVGKSALTIQLIQNH-FVDEYD--PTIEDSYRKQVVI-DGETCLLDILDTA---GQEEY----S----AMR---D   67 (162)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CcCCcC--CcchheEEEEEEE-CCEEEEEEEEECC---CCcch----H----HHH---H
Confidence            47999999999999999876 433222  1111111223345 6654  6789999   85321    1    111   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++++|+.+.++-+-++. ..+..+.... ...-..++||.|+.|...
T Consensus        68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~  120 (162)
T cd04138          68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA  120 (162)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence            123468999999988633222221 1222333322 122457899999999754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd00876 Ras Ras family

Probab=98.85  E-value=2.2e-08  Score=83.26  Aligned_cols=111  Identities=13%  Similarity=0.033  Sum_probs=68.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |.....  +.+.........+ ++  ..+.++|||   |..+.       ...    ...
T Consensus         5 ~G~~~~GKTsli~~l~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~---g~~~~-------~~~----~~~   66 (160)
T cd00876           5 LGAGGVGKSAITIQFVKGT-FVEEYD--PTIEDSYRKTIVV-DGETYTLDILDTA---GQEEF-------SAM----RDL   66 (160)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCcCcC--CChhHeEEEEEEE-CCEEEEEEEEECC---ChHHH-------HHH----HHH
Confidence            6999999999999999887 654432  2233333344455 54  468899999   85431       111    112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++++|+++.+.-+-.+ ......+....+. ...+++|+.|+.|...
T Consensus        67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  118 (160)
T cd00876          67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN  118 (160)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence            2346799999998863222121 2233334433332 3568899999999775

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04118 Rab24 Rab24 subfamily

Probab=98.85  E-value=1.3e-07  Score=82.40  Aligned_cols=112  Identities=14%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |...................+ +|..  +.++|||   |.....        .+.   ..
T Consensus         6 vG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~---G~~~~~--------~~~---~~   69 (193)
T cd04118           6 LGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTA---GSERYE--------AMS---RI   69 (193)
T ss_pred             ECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECC---Cchhhh--------hhh---Hh
Confidence            6999999999999999865 432111111111122233455 6654  4589999   864321        111   12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|||+++..+-+-+. ...+..+...   ..-..++||.|+.|..+.
T Consensus        70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~  120 (193)
T cd04118          70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQ  120 (193)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEccccccc
Confidence            3457899999999873322111 1223333332   123579999999996543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.84  E-value=1.5e-07  Score=79.15  Aligned_cols=137  Identities=13%  Similarity=-0.008  Sum_probs=75.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      ++|++||||||++|++++.+.-...    ..|...  ......+ ++  ..+.|+|||   |-..           ....
T Consensus         6 v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~v~~-~~~~~~~~i~D~~---G~~~-----------~~~~   66 (163)
T cd01860           6 LLGDSSVGKSSLVLRFVKNEFSENQ----ESTIGAAFLTQTVNL-DDTTVKFEIWDTA---GQER-----------YRSL   66 (163)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEEE-CCEEEEEEEEeCC---chHH-----------HHHH
Confidence            5799999999999999998732211    112221  1223344 54  467899999   8421           1111


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCH-HHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSE-EEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL  156 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~-ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~  156 (307)
                      ......+.|++|||+++.+.-+- .....+..+....+  .-..+||+.|+.|.......+         ...+..+...
T Consensus        67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~---------~~~~~~~~~~  135 (163)
T cd01860          67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVS---------TEEAQEYADE  135 (163)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCC---------HHHHHHHHHH
Confidence            12234578999999998621111 11222333333321  234578888998865331011         1234556666


Q ss_pred             cCCeEEEEcCCC
Q 044972          157 CDNRRVLFDNKT  168 (307)
Q Consensus       157 Cg~R~~~fnNk~  168 (307)
                      .+-.|+-.+.++
T Consensus       136 ~~~~~~~~Sa~~  147 (163)
T cd01860         136 NGLLFFETSAKT  147 (163)
T ss_pred             cCCEEEEEECCC
Confidence            666666666554

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00879 Sar1 Sar1 subfamily

Probab=98.84  E-value=7.5e-08  Score=83.68  Aligned_cols=108  Identities=8%  Similarity=-0.078  Sum_probs=69.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+.|... .. .   ..|.........+ +|..+.++|||   |..+       ..    .......
T Consensus        25 lG~~~~GKStLi~~l~~~~~-~~-~---~~T~~~~~~~i~~-~~~~~~l~D~~---G~~~-------~~----~~~~~~~   84 (190)
T cd00879          25 LGLDNAGKTTLLHMLKDDRL-AQ-H---VPTLHPTSEELTI-GNIKFKTFDLG---GHEQ-------AR----RLWKDYF   84 (190)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-cc-c---CCccCcceEEEEE-CCEEEEEEECC---CCHH-------HH----HHHHHHh
Confidence            69999999999999998763 21 1   1233333455667 89999999999   8432       11    1112234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      ++.|++++|+++.++-+-  ......+..+++..  .-..++|++|+.|...
T Consensus        85 ~~ad~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~  134 (190)
T cd00879          85 PEVDGIVFLVDAADPERF--QESKEELDSLLSDEELANVPFLILGNKIDLPG  134 (190)
T ss_pred             ccCCEEEEEEECCcHHHH--HHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence            688999999998622111  12334555555432  3368999999999653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.84  E-value=2.2e-08  Score=84.12  Aligned_cols=112  Identities=18%  Similarity=0.075  Sum_probs=65.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|++++.. |.+...+ +.+..+ .....+ +|.  .+.++|||   |..+..    .+       ..
T Consensus         7 i~G~~~~GKtsl~~~~~~~~-~~~~~~~-t~~~~~-~~~~~~-~~~~~~~~i~Dt~---G~~~~~----~~-------~~   68 (164)
T cd04145           7 VVGGGGVGKSALTIQFIQSY-FVTDYDP-TIEDSY-TKQCEI-DGQWAILDILDTA---GQEEFS----AM-------RE   68 (164)
T ss_pred             EECCCCCcHHHHHHHHHhCC-CCcccCC-CccceE-EEEEEE-CCEEEEEEEEECC---CCcchh----HH-------HH
Confidence            47999999999999999875 4332221 111122 223456 665  57889999   864321    11       11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++++|+++.++-+-+. ...+..+...... .-.++||+.|+.|...
T Consensus        69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~  121 (164)
T cd04145          69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEH  121 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCccccc
Confidence            22357899999999873322222 1122233332221 2347899999988654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.84  E-value=4e-08  Score=84.49  Aligned_cols=125  Identities=15%  Similarity=0.124  Sum_probs=73.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      ++|++||||||++|.|.|...+.      ..|     ....+ ++.  .+||||   |++...   ....+++.    ..
T Consensus         6 ~iG~~~~GKstl~~~l~~~~~~~------~~~-----~~v~~-~~~--~~iDtp---G~~~~~---~~~~~~~~----~~   61 (158)
T PRK15467          6 FVGAVGAGKTTLFNALQGNYTLA------RKT-----QAVEF-NDK--GDIDTP---GEYFSH---PRWYHALI----TT   61 (158)
T ss_pred             EECCCCCCHHHHHHHHcCCCccC------ccc-----eEEEE-CCC--CcccCC---ccccCC---HHHHHHHH----HH
Confidence            58999999999999999875321      112     12234 443  379999   987543   22233332    23


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC--
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN--  159 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~--  159 (307)
                      ..++|++|+|+++....+...    .++..+ +.  -..++++.|+.|....   ..         ..+.+++.+-+.  
T Consensus        62 ~~~ad~il~v~d~~~~~s~~~----~~~~~~-~~--~~~ii~v~nK~Dl~~~---~~---------~~~~~~~~~~~~~~  122 (158)
T PRK15467         62 LQDVDMLIYVHGANDPESRLP----AGLLDI-GV--SKRQIAVISKTDMPDA---DV---------AATRKLLLETGFEE  122 (158)
T ss_pred             HhcCCEEEEEEeCCCcccccC----HHHHhc-cC--CCCeEEEEEccccCcc---cH---------HHHHHHHHHcCCCC
Confidence            578999999999863322211    122222 21  3468899999995322   11         124455555443  


Q ss_pred             eEEEEcCCCC
Q 044972          160 RRVLFDNKTK  169 (307)
Q Consensus       160 R~~~fnNk~~  169 (307)
                      .|+..+.++.
T Consensus       123 p~~~~Sa~~g  132 (158)
T PRK15467        123 PIFELNSHDP  132 (158)
T ss_pred             CEEEEECCCc
Confidence            5776766653

>cd01890 LepA LepA subfamily

Probab=98.84  E-value=1.6e-08  Score=86.69  Aligned_cols=111  Identities=17%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCcc------ccccCC-------CCCCceeEEEEEEE----eCCeEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAF------KSKVGS-------SEDTKTCEMQRTML----KDGQVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F------~s~~s~-------~svT~~c~~~~~~~----~~Gr~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|.+||||||+.|.+++....      ......       .++|.........+    ..+..+.++|||   |..+.. 
T Consensus         6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~---G~~~~~-   81 (179)
T cd01890           6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTP---GHVDFS-   81 (179)
T ss_pred             EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECC---CChhhH-
Confidence            699999999999999985421      111000       01222221111222    034578899999   986521 


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                            ..+.+    +..+.|++|||+++....+.++...+..+..     .-..+|||+|+.|...
T Consensus        82 ------~~~~~----~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~  133 (179)
T cd01890          82 ------YEVSR----SLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPS  133 (179)
T ss_pred             ------HHHHH----HHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCc
Confidence                  12222    2347899999999875566555444433321     1246899999999643

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.83  E-value=1.7e-08  Score=104.18  Aligned_cols=136  Identities=14%  Similarity=0.093  Sum_probs=92.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC--cCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS--ADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~--~~~~~i~~eI~kcv~l   80 (307)
                      +|.|||||||+.|.+.|.+.-...  -.+||-+-..+.... .|..+.+||.|   |.++-.  ..++.+.++.     +
T Consensus         9 vGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~~-~~~~i~ivDLP---G~YSL~~~S~DE~Var~~-----l   77 (653)
T COG0370           9 VGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLKY-KGHEIEIVDLP---GTYSLTAYSEDEKVARDF-----L   77 (653)
T ss_pred             ecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEEe-cCceEEEEeCC---CcCCCCCCCchHHHHHHH-----H
Confidence            799999999999999999876554  347787666777777 89999999999   888643  2344454443     2


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR  160 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R  160 (307)
                      ....||+++-|+++. .+-..=.-+++.+.      .-.++|++++..|..+..|..+          ....|-+.-|-.
T Consensus        78 l~~~~D~ivnVvDAt-nLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~I----------D~~~L~~~LGvP  140 (653)
T COG0370          78 LEGKPDLIVNVVDAT-NLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRI----------DIEKLSKLLGVP  140 (653)
T ss_pred             hcCCCCEEEEEcccc-hHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcc----------cHHHHHHHhCCC
Confidence            357899999999886 44332223333332      3556999999999876533222          234555555666


Q ss_pred             EEEEcC
Q 044972          161 RVLFDN  166 (307)
Q Consensus       161 ~~~fnN  166 (307)
                      ++.-.-
T Consensus       141 Vv~tvA  146 (653)
T COG0370         141 VVPTVA  146 (653)
T ss_pred             EEEEEe
Confidence            665443

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.83  E-value=5.6e-08  Score=81.62  Aligned_cols=109  Identities=7%  Similarity=-0.039  Sum_probs=66.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+++.+.... .    .|.........++.+..+.++|||   |...           +........
T Consensus         5 ~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~---G~~~-----------~~~~~~~~~   65 (160)
T cd04156           5 LGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVG---GQEK-----------MRTVWKCYL   65 (160)
T ss_pred             EcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECC---CCHh-----------HHHHHHHHh
Confidence            69999999999999999875432 1    122222223334235689999999   8632           111112234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      .+.|+++||+++.+..+-  ......+..++-..  .-..++||+|+.|...
T Consensus        66 ~~~~~iv~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  115 (160)
T cd04156          66 ENTDGLVYVVDSSDEARL--DESQKELKHILKNEHIKGVPVVLLANKQDLPG  115 (160)
T ss_pred             ccCCEEEEEEECCcHHHH--HHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence            578999999998633221  12223344443322  2357999999999643

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01864 Rab19 Rab19 subfamily

Probab=98.83  E-value=9.4e-08  Score=81.06  Aligned_cols=113  Identities=13%  Similarity=0.053  Sum_probs=65.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.. |..... ...+.........+ +|  ..+.++|||   |..       ....    ...
T Consensus         8 vvG~~~~GKTsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~l~i~D~~---G~~-------~~~~----~~~   70 (165)
T cd01864           8 LIGDSNVGKTCVVQRFKSGT-FSERQG-NTIGVDFTMKTLEI-EGKRVKLQIWDTA---GQE-------RFRT----ITQ   70 (165)
T ss_pred             EECCCCCCHHHHHHHHhhCC-CcccCC-CccceEEEEEEEEE-CCEEEEEEEEECC---ChH-------HHHH----HHH
Confidence            37999999999999998765 332211 11222333344556 66  378999999   831       1111    112


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ......|++|||+++.++-+-+. ...+..+.....  .--..|||.|+.|....
T Consensus        71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~  123 (165)
T cd01864          71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQ  123 (165)
T ss_pred             HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence            23457899999999873322121 223333333211  22458899999986543

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04142 RRP22 RRP22 subfamily

Probab=98.83  E-value=5.3e-08  Score=86.87  Aligned_cols=122  Identities=11%  Similarity=0.049  Sum_probs=70.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.+ |.... ....+..+......+ +|+  .+.++|||   |+.+....   ...+......
T Consensus         5 ivG~~~vGKTsLi~~~~~~~-f~~~~-~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~---G~~~~~~~---~~~e~~~~~~   75 (198)
T cd04142           5 VLGAPGVGKTAIVRQFLAQE-FPEEY-IPTEHRRLYRPAVVL-SGRVYDLHILDVP---NMQRYPGT---AGQEWMDPRF   75 (198)
T ss_pred             EECCCCCcHHHHHHHHHcCC-CCccc-CCccccccceeEEEE-CCEEEEEEEEeCC---CcccCCcc---chhHHHHHHH
Confidence            47999999999999999875 53221 111122333334456 784  67799999   87542111   1111111122


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhc-cccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFG-KKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG-~~~~~~~IVLfT~~D~L~  132 (307)
                      .+..+.|++|||+++.++-+-+. ...++.+...+- ...-..+|||.|+.|...
T Consensus        76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence            33478999999999874322222 222333444331 122357899999998754

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01868 Rab11_like Rab11-like

Probab=98.82  E-value=6.5e-08  Score=81.76  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=65.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+ |.... ..+++.........+ +|.  .+.|+|||   |...       . ..+   ..
T Consensus         8 vvG~~~~GKSsli~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~D~~---g~~~-------~-~~~---~~   70 (165)
T cd01868           8 LIGDSGVGKSNLLSRFTRNE-FNLDS-KSTIGVEFATRSIQI-DGKTIKAQIWDTA---GQER-------Y-RAI---TS   70 (165)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCCCC-CCccceEEEEEEEEE-CCEEEEEEEEeCC---ChHH-------H-HHH---HH
Confidence            47999999999999999886 43221 122332333334455 664  67899999   8521       1 111   11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc-CCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV-FDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~-~~~~IVLfT~~D~L~  132 (307)
                      ....+.+++|||+++.++-+-++  +..++..+..... -..++||.|+.|...
T Consensus        71 ~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~  122 (165)
T cd01868          71 AYYRGAVGALLVYDITKKQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLRH  122 (165)
T ss_pred             HHHCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            23357899999999863332222  2223333222111 257889999999654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.82  E-value=1e-07  Score=98.37  Aligned_cols=112  Identities=22%  Similarity=0.224  Sum_probs=77.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc--cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRA--FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~--F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      -+|.+|+||||++|.+.|...  |... ...+.|..+......+ ++..+.+||||   |.       +..    .+.+.
T Consensus         5 iiG~~d~GKTTLi~aLtg~~~d~~~eE-~~rGiTid~~~~~~~~-~~~~v~~iDtP---Gh-------e~f----~~~~~   68 (581)
T TIGR00475         5 TAGHVDHGKTTLLKALTGIAADRLPEE-KKRGMTIDLGFAYFPL-PDYRLGFIDVP---GH-------EKF----ISNAI   68 (581)
T ss_pred             EECCCCCCHHHHHHHHhCccCcCChhH-hcCCceEEeEEEEEEe-CCEEEEEEECC---CH-------HHH----HHHHH
Confidence            379999999999999999652  3211 1234566665556667 78999999999   84       222    22233


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....++|++|||+++...+..+....+..+. .+|   ..+.||++|+.|..+.
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~-~lg---i~~iIVVlNK~Dlv~~  118 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLD-LLG---IPHTIVVITKADRVNE  118 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHH-HcC---CCeEEEEEECCCCCCH
Confidence            4456899999999997555556555555443 333   4579999999998754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01862 Rab7 Rab7 subfamily

Probab=98.81  E-value=3.2e-07  Score=77.58  Aligned_cols=141  Identities=13%  Similarity=-0.012  Sum_probs=77.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      ++|++||||||++|++++.. |..... .+++.........+ +|.  .+.|+|||   |..+.    .    .+..   
T Consensus         5 viG~~~~GKSsl~~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~D~~---g~~~~----~----~~~~---   67 (172)
T cd01862           5 ILGDSGVGKTSLMNQYVNKK-FSNQYK-ATIGADFLTKEVTV-DDKLVTLQIWDTA---GQERF----Q----SLGV---   67 (172)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCcCcC-CccceEEEEEEEEE-CCEEEEEEEEeCC---ChHHH----H----hHHH---
Confidence            68999999999999999876 322221 12222233333456 664  45689999   85321    1    1111   


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL  156 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~  156 (307)
                      ....+.+++|+|+++..+-+-+.. .....+.......  .-..++||.|+.|...+...+.         ..+..+.+.
T Consensus        68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~  138 (172)
T cd01862          68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVST---------KKAQQWCQS  138 (172)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCH---------HHHHHHHHH
Confidence            123578999999988633221211 1122222222221  1357889999999874311111         234455555


Q ss_pred             cC-CeEEEEcCCC
Q 044972          157 CD-NRRVLFDNKT  168 (307)
Q Consensus       157 Cg-~R~~~fnNk~  168 (307)
                      .+ -.++..+.++
T Consensus       139 ~~~~~~~~~Sa~~  151 (172)
T cd01862         139 NGNIPYFETSAKE  151 (172)
T ss_pred             cCCceEEEEECCC
Confidence            55 4566556554

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd00157 Rho Rho (Ras homology) family

Probab=98.81  E-value=2.5e-08  Score=84.34  Aligned_cols=111  Identities=16%  Similarity=-0.001  Sum_probs=66.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+... ...  +...........+ +|  ..+.++|||   |..+...        +   ..
T Consensus         5 i~G~~~~GKSsli~~l~~~~~~~-~~~--~~~~~~~~~~~~~-~~~~~~l~~~D~~---g~~~~~~--------~---~~   66 (171)
T cd00157           5 VVGDGAVGKTCLLISYTTGKFPT-EYV--PTVFDNYSATVTV-DGKQVNLGLWDTA---GQEEYDR--------L---RP   66 (171)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCC-CCC--CceeeeeEEEEEE-CCEEEEEEEEeCC---Ccccccc--------c---ch
Confidence            47999999999999999986422 111  1111122223334 44  468999999   8654211        0   11


Q ss_pred             hcCCCCeEEEEEEeCCCCCC--HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFS--EEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT--~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+..|++++|+++.++-+  ......+..+....+   -..++||+|+.|....
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~  119 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD  119 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence            23367899999999873222  222222333333222   5789999999997765

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PLN03126 Elongation factor Tu; Provisional

Probab=98.80  E-value=2.8e-08  Score=100.44  Aligned_cols=131  Identities=15%  Similarity=0.121  Sum_probs=85.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccc--------------ccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKS--------------KVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s--------------~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+++|||||.|.||+......              .....+.|..+......+ +++.+++||||   |..       
T Consensus        87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtP---Gh~-------  155 (478)
T PLN03126         87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCP---GHA-------  155 (478)
T ss_pred             ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECC---CHH-------
Confidence            69999999999999996321110              011234455554445567 88999999999   853       


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                      +....+..    ...++|+.|||+++..-...+.+..+..+..+ |   ..+.||++|+.|....  ..+.+.+.    .
T Consensus       156 ~f~~~~~~----g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-g---i~~iIvvvNK~Dl~~~--~~~~~~i~----~  221 (478)
T PLN03126        156 DYVKNMIT----GAAQMDGAILVVSGADGPMPQTKEHILLAKQV-G---VPNMVVFLNKQDQVDD--EELLELVE----L  221 (478)
T ss_pred             HHHHHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEecccccCH--HHHHHHHH----H
Confidence            23333333    33578999999998655666666666554432 2   4678999999998753  33334343    2


Q ss_pred             hHHHHHHhcC
Q 044972          149 PLKEILQLCD  158 (307)
Q Consensus       149 ~Lk~Li~~Cg  158 (307)
                      .++.++..+|
T Consensus       222 ~i~~~l~~~g  231 (478)
T PLN03126        222 EVRELLSSYE  231 (478)
T ss_pred             HHHHHHHhcC
Confidence            5788888764

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.80  E-value=1.4e-07  Score=82.53  Aligned_cols=107  Identities=7%  Similarity=-0.021  Sum_probs=67.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.++|.. |...    ..|.........+ ++..+.++|||   |....    .       .......
T Consensus        23 vG~~~~GKTsli~~l~~~~-~~~~----~~t~~~~~~~~~~-~~~~~~~~D~~---G~~~~----~-------~~~~~~~   82 (184)
T smart00178       23 LGLDNAGKTTLLHMLKNDR-LAQH----QPTQHPTSEELAI-GNIKFTTFDLG---GHQQA----R-------RLWKDYF   82 (184)
T ss_pred             ECCCCCCHHHHHHHHhcCC-Cccc----CCccccceEEEEE-CCEEEEEEECC---CCHHH----H-------HHHHHHh
Confidence            6999999999999999975 3211    1133333445566 88899999999   86421    1       1112345


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDEL  131 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L  131 (307)
                      ++.|++|+|+++. .... -..+...+..++...  .-..++||.|+.|..
T Consensus        83 ~~ad~ii~vvD~~-~~~~-~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~  131 (184)
T smart00178       83 PEVNGIVYLVDAY-DKER-FAESKRELDALLSDEELATVPFLILGNKIDAP  131 (184)
T ss_pred             CCCCEEEEEEECC-cHHH-HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence            7899999999986 2211 112223344444332  235799999999964

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.80  E-value=7.5e-08  Score=82.07  Aligned_cols=144  Identities=17%  Similarity=0.054  Sum_probs=80.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|++++.. |.....+ +...... ....+ +|.  .+.++|||   |......        +   ...
T Consensus         4 ~G~~~vGKTsli~~~~~~~-~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~---~~~   65 (174)
T smart00174        4 VGDGAVGKTCLLISYTTNA-FPEDYVP-TVFENYS-ADVEV-DGKPVELGLWDTA---GQEDYDR--------L---RPL   65 (174)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCCCC-cEEeeee-EEEEE-CCEEEEEEEEECC---CCcccch--------h---chh
Confidence            6999999999999999875 5432221 1111221 22345 665  57899999   8543210        1   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCC----CCchHHHHH
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPE----CPKPLKEIL  154 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~----~~~~Lk~Li  154 (307)
                      ...+.|+||||+++.++-|-+.  ...+..+...+   ...++|||.|+.|..... .+++++....    .......+.
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~  141 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA  141 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence            4568999999999874322222  12233343332   246899999999976531 2333332110    112344566


Q ss_pred             HhcCC-eEEEEcCCC
Q 044972          155 QLCDN-RRVLFDNKT  168 (307)
Q Consensus       155 ~~Cg~-R~~~fnNk~  168 (307)
                      +..+. .|+-.+-++
T Consensus       142 ~~~~~~~~~e~Sa~~  156 (174)
T smart00174      142 KRIGAVKYLECSALT  156 (174)
T ss_pred             HHcCCcEEEEecCCC
Confidence            66554 565554433

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.80  E-value=1.2e-07  Score=81.79  Aligned_cols=108  Identities=11%  Similarity=-0.023  Sum_probs=68.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+++.. |.. .   ..|..+......+ ++..+.++|||   |...           .........
T Consensus        21 ~G~~~~GKTsl~~~l~~~~-~~~-~---~~t~~~~~~~~~~-~~~~~~l~D~~---G~~~-----------~~~~~~~~~   80 (174)
T cd04153          21 VGLDNAGKTTILYQFLLGE-VVH-T---SPTIGSNVEEIVY-KNIRFLMWDIG---GQES-----------LRSSWNTYY   80 (174)
T ss_pred             ECCCCCCHHHHHHHHccCC-CCC-c---CCccccceEEEEE-CCeEEEEEECC---CCHH-----------HHHHHHHHh
Confidence            5999999999999998765 331 1   2233344455667 88899999999   8632           111122334


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      .++|++|||+++..+-+  -......+..++...  .-..++|+.|+.|...
T Consensus        81 ~~~d~vi~V~D~s~~~~--~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          81 TNTDAVILVIDSTDRER--LPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG  130 (174)
T ss_pred             hcCCEEEEEEECCCHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence            68999999999863211  112223344444332  2357899999999643

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.80  E-value=3.5e-08  Score=102.63  Aligned_cols=133  Identities=11%  Similarity=0.058  Sum_probs=82.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc------------C-------------------CCCCCceeEEEEEEEeCCeEEEE
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV------------G-------------------SSEDTKTCEMQRTMLKDGQVVNV   51 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~------------s-------------------~~svT~~c~~~~~~~~~Gr~v~V   51 (307)
                      +|.+|+|||||.|.||+.....+..            .                   ..+.|.........+ +++++++
T Consensus        30 iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~-~~~~~~l  108 (632)
T PRK05506         30 CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT-PKRKFIV  108 (632)
T ss_pred             ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-CCceEEE
Confidence            6999999999999999765332210            0                   023444455556677 8899999


Q ss_pred             EeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           52 IDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        52 IDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ||||   |..       +....+.    .+..++|++|||+++...++.+.+..+..+.. +|   .++.||++|+.|..
T Consensus       109 iDtP---G~~-------~f~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~---~~~iivvvNK~D~~  170 (632)
T PRK05506        109 ADTP---GHE-------QYTRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASL-LG---IRHVVLAVNKMDLV  170 (632)
T ss_pred             EECC---ChH-------HHHHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hC---CCeEEEEEEecccc
Confidence            9999   942       2222222    23458999999999865565555544444333 33   36889999999987


Q ss_pred             CCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972          132 EDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus       132 ~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      +.+...++...     ..+..+++..+.
T Consensus       171 ~~~~~~~~~i~-----~~i~~~~~~~~~  193 (632)
T PRK05506        171 DYDQEVFDEIV-----ADYRAFAAKLGL  193 (632)
T ss_pred             cchhHHHHHHH-----HHHHHHHHHcCC
Confidence            53212222222     235566666543

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.79  E-value=4.8e-08  Score=96.05  Aligned_cols=131  Identities=16%  Similarity=0.136  Sum_probs=83.7

Q ss_pred             CCCCCCcHHHHHHHHHCC------Ccccc----cc----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGR------RAFKS----KV----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~------~~F~s----~~----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+++|||||.+.|+|.      ..+..    ..    -..+.|..+....... +++++++||||   |..+      
T Consensus        18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtp---Gh~~------   87 (394)
T TIGR00485        18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCP---GHAD------   87 (394)
T ss_pred             EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECC---chHH------
Confidence            699999999999999843      22210    00    0135565554444455 78899999999   8632      


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                       ....+    ..+..++|++|||+++...+..+.+..+..+...    -..++||++|++|.+..  ..+.+.+.    .
T Consensus        88 -f~~~~----~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~~--~~~~~~~~----~  152 (394)
T TIGR00485        88 -YVKNM----ITGAAQMDGAILVVSATDGPMPQTREHILLARQV----GVPYIVVFLNKCDMVDD--EELLELVE----M  152 (394)
T ss_pred             -HHHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----CCCEEEEEEEecccCCH--HHHHHHHH----H
Confidence             22222    2334578999999998755777777666665543    24677789999997753  22222232    2


Q ss_pred             hHHHHHHhcC
Q 044972          149 PLKEILQLCD  158 (307)
Q Consensus       149 ~Lk~Li~~Cg  158 (307)
                      .++.+++..+
T Consensus       153 ~i~~~l~~~~  162 (394)
T TIGR00485       153 EVRELLSEYD  162 (394)
T ss_pred             HHHHHHHhcC
Confidence            4667777655

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.78  E-value=2.7e-07  Score=78.18  Aligned_cols=139  Identities=12%  Similarity=0.047  Sum_probs=76.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+ |.... ..+.+.........+ +|.  .+.|+|||   |...       . ..+.   .
T Consensus         7 i~G~~~vGKSsli~~~~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~D~~---G~~~-------~-~~~~---~   69 (166)
T cd01869           7 LIGDSGVGKSCLLLRFADDT-YTESY-ISTIGVDFKIRTIEL-DGKTIKLQIWDTA---GQER-------F-RTIT---S   69 (166)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCCCC-CCccceeEEEEEEEE-CCEEEEEEEEECC---CcHh-------H-HHHH---H
Confidence            47999999999999999875 43221 112222233334445 554  67899999   8421       1 1111   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++|||+++.++-+-.+ ...+..+.....  --...|||.|+.|....  ..+       .....+.+.+..+
T Consensus        70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~--~~~-------~~~~~~~~~~~~~  138 (166)
T cd01869          70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDK--RVV-------DYSEAQEFADELG  138 (166)
T ss_pred             HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhcccc--cCC-------CHHHHHHHHHHcC
Confidence            22357899999999863211111 112222222211  12468899999985443  111       1123455556666


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -.|+..+-++
T Consensus       139 ~~~~~~Sa~~  148 (166)
T cd01869         139 IPFLETSAKN  148 (166)
T ss_pred             CeEEEEECCC
Confidence            6676666554

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.77  E-value=3e-08  Score=82.10  Aligned_cols=98  Identities=17%  Similarity=0.093  Sum_probs=61.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|++||||||++|.++|... ..     ..|.     ...+ .+   .+||||   |.+..   ....    .+.+...
T Consensus         5 liG~~~vGKSsL~~~l~~~~~-~~-----~~t~-----~~~~-~~---~~iDt~---G~~~~---~~~~----~~~~~~~   59 (142)
T TIGR02528         5 FIGSVGCGKTTLTQALQGEEI-LY-----KKTQ-----AVEY-ND---GAIDTP---GEYVE---NRRL----YSALIVT   59 (142)
T ss_pred             EECCCCCCHHHHHHHHcCCcc-cc-----ccce-----eEEE-cC---eeecCc---hhhhh---hHHH----HHHHHHH
Confidence            479999999999999998863 11     1121     2234 43   689999   97421   1111    2222234


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ..+.|++|+|+++.++.+..+..    +...++    ..+|||+|+.|..+
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~----~~~~~~----~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPG----FASIFV----KPVIGLVTKIDLAE  102 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChh----HHHhcc----CCeEEEEEeeccCC
Confidence            67999999999987555433322    222333    37889999999654

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04151 Arl1 Arl1 subfamily

Probab=98.77  E-value=1.5e-07  Score=79.46  Aligned_cols=109  Identities=11%  Similarity=-0.040  Sum_probs=67.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+.+... ...    ..|..+......+ .+..+.++|||   |..+.        ..+   ...+.
T Consensus         5 vG~~~~GKTsl~~~l~~~~~-~~~----~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~--------~~~---~~~~~   64 (158)
T cd04151           5 LGLDNAGKTTILYRLQLGEV-VTT----IPTIGFNVETVTY-KNLKFQVWDLG---GQTSI--------RPY---WRCYY   64 (158)
T ss_pred             ECCCCCCHHHHHHHHccCCC-cCc----CCccCcCeEEEEE-CCEEEEEEECC---CCHHH--------HHH---HHHHh
Confidence            69999999999999977653 221    1232333344556 77899999999   87431        111   12234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .+++++|+|+++.++-+-.  .+...+..++...  .-.+++||.|+.|....
T Consensus        65 ~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          65 SNTDAIIYVVDSTDRDRLG--TAKEELHAMLEEEELKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             cCCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence            6899999999986321111  1223333333221  24689999999986543

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=4.1e-08  Score=98.18  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=84.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC-CCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD-SSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D-t~~~~~~i~~eI~kcv~ls   81 (307)
                      +|+|||||||+.|.++..++..+.+ -.+.|++......++ +|.+|.++||.   |+.. +....+.+.=+..+   -.
T Consensus       274 vGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~-~G~~v~L~DTA---GiRe~~~~~iE~~gI~rA~---k~  345 (531)
T KOG1191|consen  274 VGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTV-NGVPVRLSDTA---GIREESNDGIEALGIERAR---KR  345 (531)
T ss_pred             EcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeec-CCeEEEEEecc---ccccccCChhHHHhHHHHH---HH
Confidence            6999999999999999999887653 346788888888888 99999999999   9886 33333443333332   23


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----hcc--c-cCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESL----FGK--K-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~----FG~--~-~~~~~IVLfT~~D~L~~  133 (307)
                      ....|+++||+++....|.++....+.+...    ++.  + -...+|++.+..|-...
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            3468999999998545666665554444431    111  0 12456677666665443

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.76  E-value=1.7e-07  Score=80.29  Aligned_cols=115  Identities=19%  Similarity=0.074  Sum_probs=67.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.. |..... ..++.........+ +|  ..+.++|||   |..+       ....+   ..
T Consensus         7 vvG~~~vGKTsli~~~~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~-------~~~~~---~~   70 (170)
T cd04115           7 VIGDSNVGKTCLTYRFCAGR-FPERTE-ATIGVDFRERTVEI-DGERIKVQLWDTA---GQER-------FRKSM---VQ   70 (170)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCCccc-cceeEEEEEEEEEE-CCeEEEEEEEeCC---ChHH-------HHHhh---HH
Confidence            47999999999999999865 432211 11222223334456 66  578899999   8521       11112   22


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....++|++++|+++.++-+-+... .+..+... ....-..+|||.|+.|....
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~  124 (170)
T cd04115          71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQH-SLPNEVPRILVGNKCDLREQ  124 (170)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHh-cCCCCCCEEEEEECccchhh
Confidence            3356899999999987333322221 12222221 11223578999999996543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04136 Rap_like Rap-like subfamily

Probab=98.75  E-value=1.5e-07  Score=78.94  Aligned_cols=112  Identities=12%  Similarity=0.053  Sum_probs=65.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |.....        .+.   .
T Consensus         6 i~G~~~vGKTsl~~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~---~   67 (163)
T cd04136           6 VLGSGGVGKSALTVQFVQGI-FVEKYD--PTIEDSYRKQIEV-DGQQCMLEILDTA---GTEQFT--------AMR---D   67 (163)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCcccC--CchhhhEEEEEEE-CCEEEEEEEEECC---Cccccc--------hHH---H
Confidence            47999999999999999765 433222  2122222233445 664  56679999   863211        111   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|||+++.++-+-++ ...+..+....+. .-...|||.|+.|...
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  120 (163)
T cd04136          68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED  120 (163)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            23467899999999874322222 2223334433222 2347889999999654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04124 RabL2 RabL2 subfamily

Probab=98.75  E-value=5.4e-08  Score=82.79  Aligned_cols=106  Identities=15%  Similarity=0.065  Sum_probs=64.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCce--eEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT--CEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~--c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      +|.+||||||++|.+++.. |.....   .|..  .......+ ++.  .+.++|||   |...           .....
T Consensus         6 vG~~~vGKTsli~~~~~~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~-----------~~~~~   66 (161)
T cd04124           6 LGDSAVGKSKLVERFLMDG-YEPQQL---STYALTLYKHNAKF-EGKTILVDFWDTA---GQER-----------FQTMH   66 (161)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCcC---CceeeEEEEEEEEE-CCEEEEEEEEeCC---Cchh-----------hhhhh
Confidence            6999999999999999765 532221   1222  22223344 554  67799999   8532           11112


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                      .....+.|++|||+++..+.+-++ ...+..+....   ....+|||.|+.|.
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl  116 (161)
T cd04124          67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDL  116 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccC
Confidence            233467899999999874444333 22334444322   23588999999985

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04158 ARD1 ARD1 subfamily

Probab=98.74  E-value=1.7e-07  Score=80.41  Aligned_cols=108  Identities=13%  Similarity=-0.025  Sum_probs=68.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||++|.+.+.. |..    ...|.........+ ++..+.|+|||   |.....           ......
T Consensus         4 lvG~~~~GKTsl~~~l~~~~-~~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~---G~~~~~-----------~~~~~~   63 (169)
T cd04158           4 TLGLDGAGKTTILFKLKQDE-FMQ----PIPTIGFNVETVEY-KNLKFTIWDVG---GKHKLR-----------PLWKHY   63 (169)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCC----cCCcCceeEEEEEE-CCEEEEEEECC---CChhcc-----------hHHHHH
Confidence            37999999999999999873 532    12344444445566 78899999999   864321           011122


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL  131 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L  131 (307)
                      ..+.|+++||+++.++-+-  ..+..++..++-...  -..++||.|+.|..
T Consensus        64 ~~~ad~ii~V~D~s~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  113 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRV--SEAHSELAKLLTEKELRDALLLIFANKQDVA  113 (169)
T ss_pred             hccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence            3578999999998632111  123344555543321  24788999998854

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04169 RF3 RF3 subfamily

Probab=98.74  E-value=1.6e-07  Score=88.00  Aligned_cols=110  Identities=14%  Similarity=0.071  Sum_probs=69.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC--------------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|.+|+|||||.|.||.........+.                    .+.|-........| .|..+++||||   |..|
T Consensus         8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTP---G~~d   83 (267)
T cd04169           8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTP---GHED   83 (267)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECC---CchH
Confidence            699999999999999964332221110                    01121233446678 99999999999   9754


Q ss_pred             CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .       ..+...++    .+.|++|+|+++...+.......++....     .-...+|+.++.|...
T Consensus        84 f-------~~~~~~~l----~~aD~~IlVvda~~g~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~  137 (267)
T cd04169          84 F-------SEDTYRTL----TAVDSAVMVIDAAKGVEPQTRKLFEVCRL-----RGIPIITFINKLDREG  137 (267)
T ss_pred             H-------HHHHHHHH----HHCCEEEEEEECCCCccHHHHHHHHHHHh-----cCCCEEEEEECCccCC
Confidence            2       12222222    46899999999875565554444433322     2346888999998543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.73  E-value=2.7e-07  Score=77.46  Aligned_cols=139  Identities=16%  Similarity=0.024  Sum_probs=75.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe---CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK---DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|.+||||||++|.+++.. |..... .+++.........++   .+..+.++|||   |..+       . ..+.   
T Consensus         5 ~vG~~~~GKTsl~~~~~~~~-~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~D~~---G~~~-------~-~~~~---   68 (162)
T cd04106           5 VVGNGNVGKSSMIQRFVKGI-FTKDYK-KTIGVDFLEKQIFLRQSDEDVRLMLWDTA---GQEE-------F-DAIT---   68 (162)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCCCCC-CcEEEEEEEEEEEEcCCCCEEEEEEeeCC---chHH-------H-HHhH---
Confidence            37999999999999999865 432221 122222222233331   23578999999   8421       1 1111   


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      .....+.|++|+|+++.++-+-+  ....++..+ ... .-.++|||.|+.|.......+         ......+.+..
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~---------~~~~~~~~~~~  136 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESFE--AIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVIT---------NEEAEALAKRL  136 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCC---------HHHHHHHHHHc
Confidence            22346899999999886321111  122222222 111 134789999999976541111         12244556666


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +-.|+..+.++
T Consensus       137 ~~~~~~~Sa~~  147 (162)
T cd04106         137 QLPLFRTSVKD  147 (162)
T ss_pred             CCeEEEEECCC
Confidence            65666555544

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.73  E-value=8.9e-08  Score=94.69  Aligned_cols=113  Identities=12%  Similarity=0.041  Sum_probs=76.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccc--------------c-----------------CCCCCCceeEEEEEEEeCCeEEE
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSK--------------V-----------------GSSEDTKTCEMQRTMLKDGQVVN   50 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~--------------~-----------------s~~svT~~c~~~~~~~~~Gr~v~   50 (307)
                      .+|.+++|||||.+.||........              .                 ...+.|..+......+ ++++++
T Consensus         5 ~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~~~~~   83 (406)
T TIGR02034         5 TCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DKRKFI   83 (406)
T ss_pred             EECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CCeEEE
Confidence            4799999999999999854322111              0                 0124556666666778 899999


Q ss_pred             EEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           51 VIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        51 VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                      +||||   |..       +....+.    .+..++|++|||+++...+..+.+..+..+. .+|   .++.||++|+.|.
T Consensus        84 liDtP---Gh~-------~f~~~~~----~~~~~aD~allVVda~~G~~~qt~~~~~~~~-~~~---~~~iivviNK~D~  145 (406)
T TIGR02034        84 VADTP---GHE-------QYTRNMA----TGASTADLAVLLVDARKGVLEQTRRHSYIAS-LLG---IRHVVLAVNKMDL  145 (406)
T ss_pred             EEeCC---CHH-------HHHHHHH----HHHhhCCEEEEEEECCCCCccccHHHHHHHH-HcC---CCcEEEEEEeccc
Confidence            99999   842       2333333    2345899999999986556555555444333 334   4688999999998


Q ss_pred             CCC
Q 044972          131 LED  133 (307)
Q Consensus       131 L~~  133 (307)
                      ...
T Consensus       146 ~~~  148 (406)
T TIGR02034       146 VDY  148 (406)
T ss_pred             ccc
Confidence            753

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.73  E-value=1.8e-07  Score=78.88  Aligned_cols=138  Identities=13%  Similarity=0.038  Sum_probs=77.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|++++.. |.....  +.+.........+ +|.  .+.++|||   |..+..    .+.   .    .
T Consensus         6 ~G~~~~GKTsli~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---g~~~~~----~~~---~----~   67 (164)
T smart00173        6 LGSGGVGKSALTIQFVQGH-FVDDYD--PTIEDSYRKQIEI-DGEVCLLDILDTA---GQEEFS----AMR---D----Q   67 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCc-CCcccC--CchhhhEEEEEEE-CCEEEEEEEEECC---Ccccch----HHH---H----H
Confidence            6999999999999999876 543322  2122222233445 664  66789999   864421    111   1    1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++++|+++.++-+-+.. .....+....+. .-.++|||.|+.|.....  .+.       ....+.+.+..+-
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~--~~~-------~~~~~~~~~~~~~  137 (164)
T smart00173       68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESER--VVS-------TEEGKELARQWGC  137 (164)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccc--eEc-------HHHHHHHHHHcCC
Confidence            23467999999998733222221 112333333222 135788999999975431  110       1223455555565


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|.-.+.++
T Consensus       138 ~~~~~Sa~~  146 (164)
T smart00173      138 PFLETSAKE  146 (164)
T ss_pred             EEEEeecCC
Confidence            666555554

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PLN03118 Rab family protein; Provisional

Probab=98.73  E-value=1.5e-07  Score=84.02  Aligned_cols=113  Identities=9%  Similarity=0.005  Sum_probs=64.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |. ..++ ..+.........+ +|  ..+.|+|||   |.....    .+    .   .
T Consensus        19 ivG~~~vGKTsli~~l~~~~-~~-~~~~-t~~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~~~----~~----~---~   80 (211)
T PLN03118         19 LIGDSGVGKSSLLVSFISSS-VE-DLAP-TIGVDFKIKQLTV-GGKRLKLTIWDTA---GQERFR----TL----T---S   80 (211)
T ss_pred             EECcCCCCHHHHHHHHHhCC-CC-CcCC-CceeEEEEEEEEE-CCEEEEEEEEECC---CchhhH----HH----H---H
Confidence            36999999999999999875 32 1111 1112222333445 55  478999999   863311    11    1   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|||+++.++-+-++.. ....+...+....-...|||.|+.|...
T Consensus        81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~  134 (211)
T PLN03118         81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES  134 (211)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            2235789999999987432222221 1112222333323346788899998654

>cd01900 YchF YchF subfamily

Probab=98.72  E-value=5.7e-08  Score=91.69  Aligned_cols=84  Identities=12%  Similarity=-0.014  Sum_probs=57.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~   65 (307)
                      ++|.|||||||++|.|.|.++-.+.  ...+|.....+...+++.+                +|.+||||   ||.....
T Consensus         3 ivG~PN~GKSTLfn~Lt~~~~~~~n--~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~p---Gl~~~a~   77 (274)
T cd01900           3 IVGLPNVGKSTLFNALTKAGAEAAN--YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIA---GLVKGAS   77 (274)
T ss_pred             EeCCCCCcHHHHHHHHhCCCCcccc--ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECC---CcCCCCc
Confidence            5899999999999999999873222  2345656666666773332                59999999   9986443


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSV   94 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~   94 (307)
                      ..+.+......    ....+|++|+|+++
T Consensus        78 ~~~glg~~fL~----~i~~~D~li~VV~~  102 (274)
T cd01900          78 KGEGLGNKFLS----HIREVDAIAHVVRC  102 (274)
T ss_pred             hhhHHHHHHHH----HHHhCCEEEEEEeC
Confidence            33333333222    23468999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.72  E-value=1.5e-07  Score=82.25  Aligned_cols=113  Identities=12%  Similarity=0.000  Sum_probs=64.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |....+.  .+.........+.  .+..+.++|||   |...       .. .+   ..
T Consensus         8 ~vG~~~~GKTsli~~~~~~~-~~~~~~t--~~~~~~~~~~~~~~~~~~~l~l~Dt~---G~~~-------~~-~~---~~   70 (183)
T cd04152           8 MLGLDSAGKTTVLYRLKFNE-FVNTVPT--KGFNTEKIKVSLGNSKGITFHFWDVG---GQEK-------LR-PL---WK   70 (183)
T ss_pred             EECCCCCCHHHHHHHHhcCC-cCCcCCc--cccceeEEEeeccCCCceEEEEEECC---CcHh-------HH-HH---HH
Confidence            47999999999999999865 4322211  1112222222221  45689999999   8521       11 11   11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|+|+++.+.-+-++ ...+..+..... ..-..++||+|+.|...
T Consensus        71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~  123 (183)
T cd04152          71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN  123 (183)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence            23468999999999862211111 112222333222 23468999999999654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.72  E-value=1.8e-07  Score=79.83  Aligned_cols=113  Identities=13%  Similarity=0.018  Sum_probs=65.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+ |.....+ +.+.........+ +|.  .+.++|||   |..+.       .. +   ..
T Consensus         8 vvG~~~~GKSsl~~~~~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~l~l~D~~---g~~~~-------~~-~---~~   70 (167)
T cd01867           8 LIGDSGVGKSCLLLRFSEDS-FNPSFIS-TIGIDFKIRTIEL-DGKKIKLQIWDTA---GQERF-------RT-I---TT   70 (167)
T ss_pred             EECCCCCCHHHHHHHHhhCc-CCccccc-CccceEEEEEEEE-CCEEEEEEEEeCC---chHHH-------HH-H---HH
Confidence            37999999999999999876 5433221 1122223333445 554  67899999   84321       11 1   11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|||+++.++-+-+  .+..++..+-.. ..-..++||.|+.|..+.
T Consensus        71 ~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~  123 (167)
T cd01867          71 AYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEK  123 (167)
T ss_pred             HHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence            2235789999999986332211  222222222111 123478999999987643

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.72  E-value=1.1e-07  Score=95.92  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=73.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccc------------cC-------------------CCCCCceeEEEEEEEeCCeEEEE
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSK------------VG-------------------SSEDTKTCEMQRTMLKDGQVVNV   51 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~------------~s-------------------~~svT~~c~~~~~~~~~Gr~v~V   51 (307)
                      +|.+++|||||.+.||......+.            .+                   ..+.|-.+......+ ++.++++
T Consensus        33 iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~-~~~~i~~  111 (474)
T PRK05124         33 CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST-EKRKFII  111 (474)
T ss_pred             ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc-CCcEEEE
Confidence            699999999999999966432211            00                   123455555556677 8899999


Q ss_pred             EeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           52 IDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        52 IDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ||||   |.       +.....+..    +..++|++|||+++...++.+.+..+.. ...+|   .+++||++|+.|..
T Consensus       112 iDTP---Gh-------~~f~~~~~~----~l~~aD~allVVDa~~G~~~qt~~~~~l-~~~lg---~~~iIvvvNKiD~~  173 (474)
T PRK05124        112 ADTP---GH-------EQYTRNMAT----GASTCDLAILLIDARKGVLDQTRRHSFI-ATLLG---IKHLVVAVNKMDLV  173 (474)
T ss_pred             EECC---Cc-------HHHHHHHHH----HHhhCCEEEEEEECCCCccccchHHHHH-HHHhC---CCceEEEEEeeccc
Confidence            9999   93       223333333    3468999999999864555544443332 33344   46889999999987


Q ss_pred             C
Q 044972          132 E  132 (307)
Q Consensus       132 ~  132 (307)
                      .
T Consensus       174 ~  174 (474)
T PRK05124        174 D  174 (474)
T ss_pred             c
Confidence            4

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.72  E-value=3.1e-07  Score=79.61  Aligned_cols=111  Identities=13%  Similarity=0.033  Sum_probs=63.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |.....+ ++.... ......++|.  .+.++|||   |..+       . ..+   ...
T Consensus         6 vG~~~vGKTsli~~l~~~~-~~~~~~~-t~~~~~-~~~i~~~~~~~~~l~i~Dt~---G~~~-------~-~~~---~~~   68 (187)
T cd04132           6 VGDGGCGKTCLLIVYSQGK-FPEEYVP-TVFENY-VTNIQGPNGKIIELALWDTA---GQEE-------Y-DRL---RPL   68 (187)
T ss_pred             ECCCCCCHHHHHHHHHhCc-CCCCCCC-eeeeee-EEEEEecCCcEEEEEEEECC---Cchh-------H-HHH---HHH
Confidence            6999999999999999875 5432211 111111 1122331233  67899999   8421       0 111   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHH--HHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGA--AIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~--~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|||+++.++-|-++..  .+..+.. +.+  -.+.|||.|+.|....
T Consensus        69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~--~~piilv~nK~Dl~~~  120 (187)
T cd04132          69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNH-FCP--GTPIMLVGLKTDLRKD  120 (187)
T ss_pred             hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCC--CCCEEEEEeChhhhhC
Confidence            356899999999987433322221  1222222 222  3578999999996543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.72  E-value=2.6e-07  Score=77.81  Aligned_cols=112  Identities=11%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             CCCCCCcHHHHHHHHHCC-CccccccCCCCCCcee--EEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGR-RAFKSKVGSSEDTKTC--EMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~-~~F~s~~s~~svT~~c--~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      +|.+||||||++|.+++. ..|....   ..|..+  ......+.  ....+.++|||   |..       .. ..+   
T Consensus         6 vG~~~~GKtsl~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~---G~~-------~~-~~~---   68 (164)
T cd04101           6 VGDPAVGKTAFVQMFHSNGAVFPKNY---LMTTGCDFVVKEVPVDTDNTVELFIFDSA---GQE-------LY-SDM---   68 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCccC---CCceEEEEEEEEEEeCCCCEEEEEEEECC---CHH-------HH-HHH---
Confidence            699999999999999964 4564322   223322  22223331  23689999999   841       11 111   


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ........|++|+|+++.++.+-++  +-.++..+........+|||.|+.|..+.
T Consensus        69 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  122 (164)
T cd04101          69 VSNYWESPSVFILVYDVSNKASFEN--CSRWVNKVRTASKHMPGVLVGNKMDLADK  122 (164)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence            1223468899999999874322221  12222222211223678999999986543

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04125 RabA_like RabA-like subfamily

Probab=98.72  E-value=1.2e-07  Score=82.57  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=66.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |.... ..+++.........+ +|.  .+.++|||   |..+.           ......
T Consensus         6 ~G~~~vGKSsli~~~~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---g~~~~-----------~~~~~~   68 (188)
T cd04125           6 IGDYGVGKSSLLKRFTEDE-FSEST-KSTIGVDFKIKTVYI-ENKIIKLQIWDTN---GQERF-----------RSLNNS   68 (188)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCC-CCceeeEEEEEEEEE-CCEEEEEEEEECC---CcHHH-----------HhhHHH
Confidence            6999999999999999876 43211 112222233334455 664  56789999   84321           111123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|+||||+++.++-+-... ..+..+....+..  .+.||+.|+.|..+.
T Consensus        69 ~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~  120 (188)
T cd04125          69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN  120 (188)
T ss_pred             HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc
Confidence            34689999999998733221211 1223333333322  578999999997643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=98.72  E-value=7.7e-07  Score=76.38  Aligned_cols=138  Identities=9%  Similarity=-0.038  Sum_probs=73.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------CCeEEEEEeCCCCCCCCCCCcCHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------DGQVVNVIDTPAIARLFDSSADFEFV   70 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------~Gr~v~VIDTP~~~Gl~Dt~~~~~~i   70 (307)
                      .+|++||||||++|.+++.. |.....+ +++-........+.           ....+.++|||   |-.       . 
T Consensus         9 ivG~~~vGKTsli~~~~~~~-~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~---G~~-------~-   75 (180)
T cd04127           9 ALGDSGVGKTSFLYQYTDNK-FNPKFIT-TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTA---GQE-------R-   75 (180)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCccCCC-ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCC---ChH-------H-
Confidence            47999999999999999875 4332211 11111111122220           12578899999   831       1 


Q ss_pred             HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                         ..........+.|+||||+++.++-+-.+  +..++..+-..  ..-.+++||.|+.|..+..  .+       ...
T Consensus        76 ---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--~v-------~~~  141 (180)
T cd04127          76 ---FRSLTTAFFRDAMGFLLIFDLTNEQSFLN--VRNWMSQLQTHAYCENPDIVLCGNKADLEDQR--QV-------SEE  141 (180)
T ss_pred             ---HHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCcEEEEEeCccchhcC--cc-------CHH
Confidence               11222234468999999999863222121  22233222111  1124689999999965431  11       112


Q ss_pred             hHHHHHHhcCCeEEEEcC
Q 044972          149 PLKEILQLCDNRRVLFDN  166 (307)
Q Consensus       149 ~Lk~Li~~Cg~R~~~fnN  166 (307)
                      ..+.+.+..+-.|+-..-
T Consensus       142 ~~~~~~~~~~~~~~e~Sa  159 (180)
T cd04127         142 QAKALADKYGIPYFETSA  159 (180)
T ss_pred             HHHHHHHHcCCeEEEEeC
Confidence            345666665544544333

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04122 Rab14 Rab14 subfamily

Probab=98.71  E-value=4.1e-07  Score=77.32  Aligned_cols=136  Identities=12%  Similarity=0.054  Sum_probs=76.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE--EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE--MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~--~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      +|++||||||++|.+++.+ |....   +.|..+.  .....+ +|.  .+.++|||   |...       . ..+   .
T Consensus         8 iG~~~vGKTsli~~~~~~~-~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~-------~-~~~---~   68 (166)
T cd04122           8 IGDMGVGKSCLLHQFTEKK-FMADC---PHTIGVEFGTRIIEV-NGQKIKLQIWDTA---GQER-------F-RAV---T   68 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCC---CcccceeEEEEEEEE-CCEEEEEEEEECC---CcHH-------H-HHH---H
Confidence            6999999999999999874 54332   2232222  223345 654  67899999   8421       1 111   1


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      .....+.|++|||+++.++-+-+  .+..++..+... .--..++||.|+.|....  ..+       .....+.+.+..
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~--~~~-------~~~~~~~~~~~~  137 (166)
T cd04122          69 RSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQ--RDV-------TYEEAKQFADEN  137 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccc--cCc-------CHHHHHHHHHHc
Confidence            22346899999999987432222  222333332111 112578999999886543  111       112345555555


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +-.|+-.+-++
T Consensus       138 ~~~~~e~Sa~~  148 (166)
T cd04122         138 GLLFLECSAKT  148 (166)
T ss_pred             CCEEEEEECCC
Confidence            55555444433

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.71  E-value=2.1e-07  Score=91.32  Aligned_cols=110  Identities=16%  Similarity=0.014  Sum_probs=65.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCC---CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSED---TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~sv---T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|++|+||||++|+|-|-..=..+....++   |.....  ...|.=..|++.|.|   |...+..+.+...+++.    
T Consensus        41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlP---G~gt~~f~~~~Yl~~~~----  111 (376)
T PF05049_consen   41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLP---GIGTPNFPPEEYLKEVK----  111 (376)
T ss_dssp             EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE-----GGGSS--HHHHHHHTT----
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCC---CCCCCCCCHHHHHHHcc----
Confidence            699999999999999774321112222222   233222  233344589999999   99877777776655542    


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                        ....|.||+|.+ . ||+..+....+.++.+     -+...+|-|+.|.
T Consensus       112 --~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~  153 (376)
T PF05049_consen  112 --FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-----GKKFYFVRTKVDS  153 (376)
T ss_dssp             --GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-----T-EEEEEE--HHH
T ss_pred             --ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-----CCcEEEEEecccc
Confidence              234678777664 4 9999999999999884     6778999999874

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.71  E-value=3.2e-07  Score=78.72  Aligned_cols=108  Identities=18%  Similarity=0.022  Sum_probs=64.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-C--CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-D--GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~--Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|++||||||++|.++... |....   ..|..+......+. +  +..+.++|||   |..+....        ..   
T Consensus         6 vG~~~vGKTsli~~~~~~~-~~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~---G~~~~~~~--------~~---   67 (166)
T cd00877           6 VGDGGTGKTTFVKRHLTGE-FEKKY---VATLGVEVHPLDFHTNRGKIRFNVWDTA---GQEKFGGL--------RD---   67 (166)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCC---CCceeeEEEEEEEEECCEEEEEEEEECC---CChhhccc--------cH---
Confidence            6999999999999999654 43222   22322322222111 3  3578899999   86432211        11   


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ....++|++|+|+++.++-+-+. ...+..+....+   -.++|||.|+.|..
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~  117 (166)
T cd00877          68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK  117 (166)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence            12358999999999873322222 123344444433   56789999999965

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PRK00007 elongation factor G; Reviewed

Probab=98.71  E-value=1.2e-07  Score=99.80  Aligned_cols=111  Identities=17%  Similarity=0.132  Sum_probs=78.3

Q ss_pred             CCCCCCcHHHHHHHHH---CCCccc--ccc-----------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSIL---GRRAFK--SKV-----------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~~~F~--s~~-----------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|.+|+|||||.|.||   |.....  ...           ...+.|.........| .|+++++||||   |..|    
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTP---G~~~----   87 (693)
T PRK00007         16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTP---GHVD----   87 (693)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCC---CcHH----
Confidence            6999999999999998   431110  000           1224555565667788 99999999999   9754    


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                         ...++.+.+    ...|++|||+++...++.++...+..+...     ....||++|++|....
T Consensus        88 ---f~~ev~~al----~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         88 ---FTIEVERSL----RVLDGAVAVFDAVGGVEPQSETVWRQADKY-----KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             ---HHHHHHHHH----HHcCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence               222444443    346899999998767888888888877653     3567899999998754

>cd04144 Ras2 Ras2 subfamily

Probab=98.70  E-value=1.6e-07  Score=82.43  Aligned_cols=140  Identities=11%  Similarity=0.056  Sum_probs=78.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|..  +.++|||   |.....        .+.   .
T Consensus         4 ivG~~~vGKTsli~~l~~~~-f~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~---~   65 (190)
T cd04144           4 VLGDGGVGKTALTIQLCLNH-FVETYD--PTIEDSYRKQVVV-DGQPCMLEVLDTA---GQEEYT--------ALR---D   65 (190)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCccCC--CchHhhEEEEEEE-CCEEEEEEEEECC---CchhhH--------HHH---H
Confidence            37999999999999999654 543221  1111111223345 7764  7789999   853211        111   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      ....+.|+||||+++.++-|-+. ...+..+...... .....+|||.|+.|.....  .+    .   ....+.+....
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~--~v----~---~~~~~~~~~~~  136 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER--EV----S---TEEGAALARRL  136 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC--cc----C---HHHHHHHHHHh
Confidence            23457899999999874333222 2234444444332 1235788899999965431  11    1   11234555556


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +..|+-.+.++
T Consensus       137 ~~~~~e~SAk~  147 (190)
T cd04144         137 GCEFIEASAKT  147 (190)
T ss_pred             CCEEEEecCCC
Confidence            65565444433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04148 RGK RGK subfamily

Probab=98.70  E-value=1.3e-07  Score=85.70  Aligned_cols=113  Identities=16%  Similarity=0.025  Sum_probs=65.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++...+.....+... .........+ +|  ..+.++|||   |..+      .+    .   .
T Consensus         5 lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~-~~~~~~l~i~Dt~---G~~~------~~----~---~   66 (221)
T cd04148           5 MLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSV-DGEESTLVVIDHW---EQEM------WT----E---D   66 (221)
T ss_pred             EECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEE-CCEEEEEEEEeCC---Ccch------HH----H---h
Confidence            3799999999999999876533122211111 1222233344 44  578999999   8751      11    1   1


Q ss_pred             hcCC-CCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKD-GIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~p-Gpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.. ++|++|||+++.++-+-+. ...+..+... .......+|||.|+.|....
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc
Confidence            1233 8999999999874322221 2223333332 22234678999999996543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.69  E-value=1.6e-07  Score=78.49  Aligned_cols=111  Identities=15%  Similarity=0.047  Sum_probs=63.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.. |.....  +.+..-......+ +|  ..+.++|||   |..+..       ...    .
T Consensus         5 ~~G~~~~GKTsl~~~l~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~---g~~~~~-------~~~----~   66 (164)
T cd04139           5 VVGAGGVGKSALTLQFMYDE-FVEDYE--PTKADSYRKKVVL-DGEDVQLNILDTA---GQEDYA-------AIR----D   66 (164)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CccccC--CcchhhEEEEEEE-CCEEEEEEEEECC---Chhhhh-------HHH----H
Confidence            47999999999999999765 433222  2122212222344 54  468899999   854321       111    1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++++|+.+...-+  -.....++..+...  ..-..++||+|+.|...
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~  119 (164)
T cd04139          67 NYHRSGEGFLLVFSITDMES--FTATAEFREQILRVKDDDNVPLLLVGNKCDLED  119 (164)
T ss_pred             HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence            23346789999998752111  11112222222221  23467999999999765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.69  E-value=2.9e-07  Score=84.12  Aligned_cols=74  Identities=14%  Similarity=-0.009  Sum_probs=54.1

Q ss_pred             EEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeE
Q 044972           42 MLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYM  121 (307)
Q Consensus        42 ~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~  121 (307)
                      .. .|+.+++||||   |..       ...+....++  ....+|++++|+++...++..+...+.++...     -...
T Consensus        80 ~~-~~~~i~liDtp---G~~-------~~~~~~~~~~--~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-----~ip~  141 (224)
T cd04165          80 EK-SSKLVTFIDLA---GHE-------RYLKTTLFGL--TGYAPDYAMLVVAANAGIIGMTKEHLGLALAL-----NIPV  141 (224)
T ss_pred             ee-CCcEEEEEECC---CcH-------HHHHHHHHhh--cccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCE
Confidence            44 78999999999   853       2333443332  12358999999998767899998888887653     2457


Q ss_pred             EEEEecCCCCCC
Q 044972          122 IVVFTRGDELED  133 (307)
Q Consensus       122 IVLfT~~D~L~~  133 (307)
                      ||++|++|.+..
T Consensus       142 ivvvNK~D~~~~  153 (224)
T cd04165         142 FVVVTKIDLAPA  153 (224)
T ss_pred             EEEEECccccCH
Confidence            999999998754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.67  E-value=8.7e-08  Score=81.28  Aligned_cols=139  Identities=12%  Similarity=0.094  Sum_probs=75.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||+++.+++.. |.....  +.+.........+ +|.  .+.++|||   |......  ..    ...    
T Consensus         5 vG~~~~GKtsli~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~D~~---g~~~~~~--~~----~~~----   67 (165)
T cd04146           5 LGASGVGKSALVVRFLTKR-FIGEYD--PNLESLYSRQVTI-DGEQVSLEILDTA---GQQQADT--EQ----LER----   67 (165)
T ss_pred             ECCCCCcHHHHHHHHHhCc-cccccC--CChHHhceEEEEE-CCEEEEEEEEECC---CCccccc--ch----HHH----
Confidence            6999999999999999754 532221  1111122233456 776  46799999   8763110  01    111    


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...++|++|+|+++.++-+-+. ...+..+...-....-.++|||.|+.|....  ..    +.   ......+.+..+.
T Consensus        68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~----v~---~~~~~~~~~~~~~  138 (165)
T cd04146          68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQ----VS---TEEGEKLASELGC  138 (165)
T ss_pred             HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--Cc----cC---HHHHHHHHHHcCC
Confidence            1246899999999874322222 1123333332110224578999999985332  11    11   1233455555665


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      .|+-.+.+
T Consensus       139 ~~~e~Sa~  146 (165)
T cd04146         139 LFFEVSAA  146 (165)
T ss_pred             EEEEeCCC
Confidence            55444443

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.66  E-value=3e-07  Score=83.12  Aligned_cols=132  Identities=13%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccc-----------------------------ccCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKS-----------------------------KVGSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s-----------------------------~~s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+|||||...||...-..+                             .....+.|.........+ .|..+++||
T Consensus         5 ~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i~liD   83 (219)
T cd01883           5 IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRFTILD   83 (219)
T ss_pred             ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEEEEEE
Confidence            69999999999999974311100                             000124555555666778 999999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-----C--CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-----F--SEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-----f--T~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |..+       ....+.    .+...+|++|||+++...     |  ..+....+... ..+|   .+++||++|
T Consensus        84 tp---G~~~-------~~~~~~----~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiivvN  145 (219)
T cd01883          84 AP---GHRD-------FVPNMI----TGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVAVN  145 (219)
T ss_pred             CC---ChHH-------HHHHHH----HHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEEEE
Confidence            99   9632       112222    233568999999998632     1  22233333222 2222   368899999


Q ss_pred             cCCCCCC--CcccHHHhcCCCCCchHHHHHHhcC
Q 044972          127 RGDELED--NDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       127 ~~D~L~~--~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      +.|....  +...+++.+.     .++.++...+
T Consensus       146 K~Dl~~~~~~~~~~~~i~~-----~l~~~l~~~~  174 (219)
T cd01883         146 KMDDVTVNWSEERYDEIKK-----ELSPFLKKVG  174 (219)
T ss_pred             ccccccccccHHHHHHHHH-----HHHHHHHHcC
Confidence            9998732  1122333332     3556666644

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01893 Miro1 Miro1 subfamily

Probab=98.66  E-value=2.6e-07  Score=78.82  Aligned_cols=110  Identities=13%  Similarity=0.051  Sum_probs=64.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEE-eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTML-KDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~-~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|.+||||||+.|++++.. |....+.  .+... .....+ ..+..+.++|||   |.....   ..    ..    ..
T Consensus         6 vG~~~vGKTsl~~~l~~~~-~~~~~~~--~~~~~-~~~~~~~~~~~~~~i~Dt~---G~~~~~---~~----~~----~~   67 (166)
T cd01893           6 IGDEGVGKSSLIMSLVSEE-FPENVPR--VLPEI-TIPADVTPERVPTTIVDTS---SRPQDR---AN----LA----AE   67 (166)
T ss_pred             ECCCCCCHHHHHHHHHhCc-CCccCCC--cccce-EeeeeecCCeEEEEEEeCC---Cchhhh---HH----Hh----hh
Confidence            6999999999999999865 5432211  11111 111122 033578899999   875421   11    11    12


Q ss_pred             CCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|+++||+++.++-+-+.  ...+..+... +.  ..+++||.|+.|..+.
T Consensus        68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~--~~pviiv~nK~Dl~~~  118 (166)
T cd01893          68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRL-GV--KVPIILVGNKSDLRDG  118 (166)
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEEchhcccc
Confidence            367899999999863332222  1223333332 22  4689999999997654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.66  E-value=3e-07  Score=81.25  Aligned_cols=111  Identities=17%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |......  .+..-......+ +|  ..+.++|||   |..+..        .+.   ..
T Consensus         5 vG~~~vGKTsll~~~~~~~-~~~~~~~--t~~~~~~~~~~~-~~~~~~l~i~D~~---G~~~~~--------~~~---~~   66 (198)
T cd04147           5 MGAAGVGKTALIQRFLYDT-FEPKYRR--TVEEMHRKEYEV-GGVSLTLDILDTS---GSYSFP--------AMR---KL   66 (198)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCccCCC--chhhheeEEEEE-CCEEEEEEEEECC---Cchhhh--------HHH---HH
Confidence            6999999999999999875 4332221  111122234456 66  478899999   865421        111   12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|||+++...-+-++. ..+..+..... ..-..+|||.|+.|...
T Consensus        67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~  118 (198)
T cd04147          67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE  118 (198)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence            34688999999998632222221 12233333332 23467899999999765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=98.66  E-value=3.9e-07  Score=77.56  Aligned_cols=112  Identities=12%  Similarity=-0.029  Sum_probs=63.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.+ |.....+ +++.......... +|  ..+.++|||   |..+.           ......
T Consensus         7 ~G~~~~GKSsli~~l~~~~-~~~~~~~-t~~~~~~~~~~~~-~~~~~~~~l~Dt~---g~~~~-----------~~~~~~   69 (165)
T cd01865           7 IGNSSVGKTSFLFRYADDS-FTSAFVS-TVGIDFKVKTVFR-NDKRVKLQIWDTA---GQERY-----------RTITTA   69 (165)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCCCC-ceeeEEEEEEEEE-CCEEEEEEEEECC---ChHHH-----------HHHHHH
Confidence            6999999999999999876 5322111 1111122222233 44  468899999   85321           111123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|+|+++.++-+  -..+..++..+.-.. ...+++||.|+.|..+.
T Consensus        70 ~~~~~~~~l~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~  121 (165)
T cd01865          70 YYRGAMGFILMYDITNEES--FNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE  121 (165)
T ss_pred             HccCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence            3578999999999863311  112223333322111 13468999999886543

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04110 Rab35 Rab35 subfamily

Probab=98.66  E-value=5.7e-07  Score=79.64  Aligned_cols=113  Identities=14%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.. |..... .+++.........+ +|  ..+.|+|||   |-...        ..+   ..
T Consensus        11 vvG~~~vGKTsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~l~l~D~~---G~~~~--------~~~---~~   73 (199)
T cd04110          11 IIGDSGVGKSSLLLRFADNT-FSGSYI-TTIGVDFKIRTVEI-NGERVKLQIWDTA---GQERF--------RTI---TS   73 (199)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCCCcC-ccccceeEEEEEEE-CCEEEEEEEEeCC---CchhH--------HHH---HH
Confidence            47999999999999999876 432111 11111222223344 55  467899999   84211        111   12


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|+||||+++.++-+-+  .+..++..+....-....+||.|+.|..+.
T Consensus        74 ~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~  125 (199)
T cd04110          74 TYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPER  125 (199)
T ss_pred             HHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence            2345789999999986332212  222333332222223467888999986543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04149 Arf6 Arf6 subfamily

Probab=98.66  E-value=4e-07  Score=78.50  Aligned_cols=107  Identities=12%  Similarity=0.014  Sum_probs=67.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+.+.. |...    ..|.......... ++..+.++|||   |...       . ..+   .....
T Consensus        15 ~G~~~~GKTsli~~l~~~~-~~~~----~~t~g~~~~~~~~-~~~~~~l~Dt~---G~~~-------~-~~~---~~~~~   74 (168)
T cd04149          15 LGLDAAGKTTILYKLKLGQ-SVTT----IPTVGFNVETVTY-KNVKFNVWDVG---GQDK-------I-RPL---WRHYY   74 (168)
T ss_pred             ECcCCCCHHHHHHHHccCC-Cccc----cCCcccceEEEEE-CCEEEEEEECC---CCHH-------H-HHH---HHHHh
Confidence            7999999999999998654 4321    1232333334456 77899999999   8632       1 111   12345


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDEL  131 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L  131 (307)
                      .+.|++|||+++.++-+-  ..+..++..++...  .-..++||+|+.|..
T Consensus        75 ~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  123 (168)
T cd04149          75 TGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLP  123 (168)
T ss_pred             ccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence            689999999998743221  22334455554332  125799999999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK09866 hypothetical protein; Provisional

Probab=98.65  E-value=4.7e-05  Score=79.33  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=54.6

Q ss_pred             eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      .++++||||   |++.+..  ..+.+.+.+.    ..+.|+||||+++...++..|...++.+.+. |+  -.++++|++
T Consensus       230 ~QIIFVDTP---GIhk~~~--~~L~k~M~eq----L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVN  297 (741)
T PRK09866        230 GQLTLLDTP---GPNEAGQ--PHLQKMLNQQ----LARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVN  297 (741)
T ss_pred             CCEEEEECC---CCCCccc--hHHHHHHHHH----HhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEE
Confidence            588999999   9986542  2244444443    4568999999999755899998888888763 22  137999999


Q ss_pred             cCCCCC
Q 044972          127 RGDELE  132 (307)
Q Consensus       127 ~~D~L~  132 (307)
                      +.|...
T Consensus       298 KIDl~d  303 (741)
T PRK09866        298 KFDQQD  303 (741)
T ss_pred             cccCCC
Confidence            999864

>PRK12739 elongation factor G; Reviewed

Probab=98.65  E-value=1.3e-07  Score=99.38  Aligned_cols=111  Identities=19%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc----------------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV----------------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~----------------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|.+|+|||||.|.||....-....                ...+.|......+..| +|+++++||||   |+.|    
T Consensus        14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTP---G~~~----   85 (691)
T PRK12739         14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTP---GHVD----   85 (691)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCC---CHHH----
Confidence            6999999999999998532110000                1234566666677889 99999999999   9754    


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                         ...++.+++    ...|++|||+++...++.++...+..+...     ....||++|++|....
T Consensus        86 ---f~~e~~~al----~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         86 ---FTIEVERSL----RVLDGAVAVFDAVSGVEPQSETVWRQADKY-----GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             ---HHHHHHHHH----HHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence               222444433    356899999998767888888777776542     3567899999998754

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.65  E-value=4.1e-07  Score=78.02  Aligned_cols=111  Identities=11%  Similarity=-0.030  Sum_probs=67.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||++|.+++.. |.....   .|.........+ .+..+.++|||   |-....        .+   ....
T Consensus         4 ivG~~~vGKTsli~~~~~~~-~~~~~~---pt~g~~~~~i~~-~~~~l~i~Dt~---G~~~~~--------~~---~~~~   64 (164)
T cd04162           4 VLGLDGAGKTSLLHSLSSER-SLESVV---PTTGFNSVAIPT-QDAIMELLEIG---GSQNLR--------KY---WKRY   64 (164)
T ss_pred             EECCCCCCHHHHHHHHhcCC-Cccccc---ccCCcceEEEee-CCeEEEEEECC---CCcchh--------HH---HHHH
Confidence            37999999999999999875 433221   122222223345 67889999999   853311        11   1123


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|++|||+++.++.+-.  .+..++..+.....-..++||.|+.|....
T Consensus        65 ~~~ad~ii~V~D~t~~~s~~--~~~~~l~~~~~~~~~~piilv~NK~Dl~~~  114 (164)
T cd04162          65 LSGSQGLIFVVDSADSERLP--LARQELHQLLQHPPDLPLVVLANKQDLPAA  114 (164)
T ss_pred             HhhCCEEEEEEECCCHHHHH--HHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence            46789999999986333211  222334444332234678999999996443

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.65  E-value=6e-08  Score=91.57  Aligned_cols=61  Identities=18%  Similarity=0.073  Sum_probs=46.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS   71 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~   71 (307)
                      +|.|||||||++|+|+|.++..++. ..++|+.++.  ..  -+..+.+||||   |+..+...+++..
T Consensus       127 ~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtP---Gi~~~~~~~~~~~  187 (287)
T PRK09563        127 IGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQW--IK--LGKGLELLDTP---GILWPKLEDQEVG  187 (287)
T ss_pred             ECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEE--EE--eCCcEEEEECC---CcCCCCCCcHHHH
Confidence            6999999999999999998876643 3467777653  22  35579999999   9998876555443

>cd04175 Rap1 Rap1 subgroup

Probab=98.63  E-value=8.7e-07  Score=74.89  Aligned_cols=139  Identities=10%  Similarity=0.032  Sum_probs=75.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|+++.. .|.....  +.+..-......+ +|.  .+.++|||   |.....    .    +.   .
T Consensus         6 ~~G~~~~GKTsli~~~~~~-~~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~----~----~~---~   67 (164)
T cd04175           6 VLGSGGVGKSALTVQFVQG-IFVEKYD--PTIEDSYRKQVEV-DGQQCMLEILDTA---GTEQFT----A----MR---D   67 (164)
T ss_pred             EECCCCCCHHHHHHHHHhC-CCCcccC--CcchheEEEEEEE-CCEEEEEEEEECC---Ccccch----h----HH---H
Confidence            4799999999999999954 4543322  2121111223445 665  45689999   863211    1    11   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|+++||+++.++-+-++ ...+..+..... ..-..++|+.|+.|....  ..+       .......+.+..+
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~-------~~~~~~~~~~~~~  137 (164)
T cd04175          68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE--RVV-------GKEQGQNLARQWG  137 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc--cEE-------cHHHHHHHHHHhC
Confidence            23457899999998863322222 222333333221 123468999999997543  111       0112345555556


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      ..|+-.+-++
T Consensus       138 ~~~~~~Sa~~  147 (164)
T cd04175         138 CAFLETSAKA  147 (164)
T ss_pred             CEEEEeeCCC
Confidence            5565554443

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.63  E-value=3.9e-07  Score=79.77  Aligned_cols=105  Identities=10%  Similarity=-0.003  Sum_probs=67.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+.... |.. .   ..|.........+ ++..+.++|||   |...           .........
T Consensus        23 vG~~~vGKTsli~~~~~~~-~~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~---G~~~-----------~~~~~~~~~   82 (182)
T PTZ00133         23 VGLDAAGKTTILYKLKLGE-VVT-T---IPTIGFNVETVEY-KNLKFTMWDVG---GQDK-----------LRPLWRHYY   82 (182)
T ss_pred             EcCCCCCHHHHHHHHhcCC-ccc-c---CCccccceEEEEE-CCEEEEEEECC---CCHh-----------HHHHHHHHh
Confidence            6999999999999997543 432 1   1233343444556 78899999999   8631           111122345


Q ss_pred             CCCeEEEEEEeCCCC--CCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972           83 DGIHAVLIVFSVRNR--FSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL  131 (307)
Q Consensus        83 pGpha~LLVl~~~~R--fT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L  131 (307)
                      .+.|++|||+++.++  |+.    +...+..++....  -.++|||.|+.|..
T Consensus        83 ~~ad~iI~v~D~t~~~s~~~----~~~~l~~~~~~~~~~~~piilv~NK~Dl~  131 (182)
T PTZ00133         83 QNTNGLIFVVDSNDRERIGD----AREELERMLSEDELRDAVLLVFANKQDLP  131 (182)
T ss_pred             cCCCEEEEEEeCCCHHHHHH----HHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence            689999999998632  222    2334455554432  35788999999854

>cd04114 Rab30 Rab30 subfamily

Probab=98.63  E-value=6.4e-07  Score=75.82  Aligned_cols=112  Identities=12%  Similarity=-0.004  Sum_probs=65.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |..... .+.+..+......+ +|.  .+.++|||   |..+       ...    ....
T Consensus        13 ~G~~~~GKSsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~D~~---g~~~-------~~~----~~~~   75 (169)
T cd04114          13 IGNAGVGKTCLVRRFTQGL-FPPGQG-ATIGVDFMIKTVEI-KGEKIKLQIWDTA---GQER-------FRS----ITQS   75 (169)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCCC-CceeeEEEEEEEEE-CCEEEEEEEEECC---CcHH-------HHH----HHHH
Confidence            6999999999999999764 332211 12223344444556 774  47788999   8532       111    1122


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|+|+++...-+-+. ...+..+..+...  --..+|+.|+.|....
T Consensus        76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~~  127 (169)
T cd04114          76 YYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAER  127 (169)
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            3467899999999863222111 1223333433322  2346888999996543

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.63  E-value=4.7e-07  Score=78.22  Aligned_cols=111  Identities=21%  Similarity=0.100  Sum_probs=65.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....+ ............+ +|  ..+.++|||   |....        ..+   ...
T Consensus         6 vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~--------~~~---~~~   68 (170)
T cd04108           6 VGDLSVGKTCLINRFCKDV-FDKNYKA-TIGVDFEMERFEI-LGVPFSLQLWDTA---GQERF--------KCI---AST   68 (170)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCCCC-ceeeEEEEEEEEE-CCEEEEEEEEeCC---ChHHH--------Hhh---HHH
Confidence            6999999999999999874 6543321 1112233333445 55  478999999   85321        011   123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccC--CeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVF--DYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~--~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|||+++.++-+-+  ....++..++....-  ..++||.|+.|..+
T Consensus        69 ~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~  120 (170)
T cd04108          69 YYRGAQAIIIVFDLTDVASLE--HTRQWLEDALKENDPSSVLLFLVGTKKDLSS  120 (170)
T ss_pred             HhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence            356899999999986321111  122334333322211  35789999999543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04109 Rab28 Rab28 subfamily

Probab=98.62  E-value=1.3e-06  Score=78.35  Aligned_cols=139  Identities=16%  Similarity=0.090  Sum_probs=78.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE--EEEEEEeC--CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE--MQRTMLKD--GQVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~--~~~~~~~~--Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      .+|.+||||||++|.+++.. |....   ..|....  .....+++  ...+.|+|||   |...        ...+.  
T Consensus         5 ivG~~~vGKSsLi~~l~~~~-~~~~~---~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~---G~~~--------~~~l~--   67 (215)
T cd04109           5 VLGDGAVGKTSLCRRFAKEG-FGKSY---KQTIGLDFFSKRVTLPGNLNVTLQVWDIG---GQSI--------GGKML--   67 (215)
T ss_pred             EECcCCCCHHHHHHHHhcCC-CCCCC---CCceeEEEEEEEEEeCCCCEEEEEEEECC---CcHH--------HHHHH--
Confidence            47999999999999999865 54322   2233222  23334422  2578899999   8421        11111  


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcccc-CCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHH
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKV-FDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQ  155 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~-~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~  155 (307)
                       .....+.|+||||+++.++-+-+. ...+..+....+... ...+|||.|+.|.....  .+       .......+.+
T Consensus        68 -~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--~v-------~~~~~~~~~~  137 (215)
T cd04109          68 -DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--TV-------KDDKHARFAQ  137 (215)
T ss_pred             -HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc--cc-------CHHHHHHHHH
Confidence             122468999999999874322222 223444555554322 23578899999975431  11       1123455566


Q ss_pred             hcCCeEEEEcCC
Q 044972          156 LCDNRRVLFDNK  167 (307)
Q Consensus       156 ~Cg~R~~~fnNk  167 (307)
                      ..+-.|+...-+
T Consensus       138 ~~~~~~~~iSAk  149 (215)
T cd04109         138 ANGMESCLVSAK  149 (215)
T ss_pred             HcCCEEEEEECC
Confidence            555445544433

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PTZ00258 GTP-binding protein; Provisional

Probab=98.62  E-value=1.4e-07  Score=93.10  Aligned_cols=85  Identities=12%  Similarity=0.023  Sum_probs=57.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~   65 (307)
                      ++|.|||||||++|.|.|.++-.+..  ..+|.....+...+++.+                ++.+||||   ||.....
T Consensus        26 IVG~PNvGKSTLfnaLt~~~~~v~n~--pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp---GLv~ga~  100 (390)
T PTZ00258         26 IVGLPNVGKSTTFNALCKQQVPAENF--PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA---GLVKGAS  100 (390)
T ss_pred             EECCCCCChHHHHHHHhcCcccccCC--CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC---CcCcCCc
Confidence            58999999999999999987643322  345667777776664333                59999999   9985432


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      ....+...+..    .....|++|+|++..
T Consensus       101 ~g~gLg~~fL~----~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        101 EGEGLGNAFLS----HIRAVDGIYHVVRAF  126 (390)
T ss_pred             chhHHHHHHHH----HHHHCCEEEEEEeCC
Confidence            22333333222    235689999999863

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.62  E-value=9.8e-08  Score=76.64  Aligned_cols=112  Identities=16%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||+++++++.............+.........+ .+  ..+.+.|+|   |...........          
T Consensus         5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~---g~~~~~~~~~~~----------   70 (119)
T PF08477_consen    5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFG---GQEEFYSQHQFF----------   70 (119)
T ss_dssp             ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEES---SSHCHHCTSHHH----------
T ss_pred             ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecC---ccceecccccch----------
Confidence            69999999999999998874411111111112222223333 33  357889999   873221111111          


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGD  129 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D  129 (307)
                       ..+.|++|||+++.+.-|-+. ...+.++..+-+....-.+|||-||.|
T Consensus        71 -~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   71 -LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             -HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             -hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence             235899999999873322233 233455555544334478999999976

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.62  E-value=2.5e-07  Score=97.17  Aligned_cols=111  Identities=17%  Similarity=0.111  Sum_probs=77.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc---C-------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV---G-------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~---s-------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|.+|+|||||.|.||+........   .             ..+.|..+......| ++.++++||||   |+.|..  
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTP---G~~~~~--   89 (689)
T TIGR00484        16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTP---GHVDFT--   89 (689)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECC---CCcchh--
Confidence            6999999999999998543221100   0             124555666777889 99999999999   987622  


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                           .++.+.    ....|++|||+++....+.++...+..+...     -...||+.|+.|....
T Consensus        90 -----~~~~~~----l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        90 -----VEVERS----LRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             -----HHHHHH----HHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence                 122222    2456999999998766777777666665442     3567889999997653

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=98.61  E-value=6.1e-07  Score=80.34  Aligned_cols=112  Identities=10%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe---CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK---DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|++||||||++|.+.+.+ |....+  +.  ..........   .+..+.|+|||   |...       +...+... 
T Consensus         5 l~G~~~sGKTsL~~~l~~~~-~~~t~~--s~--~~~~~~~~~~~~~~~~~~~l~D~p---G~~~-------~~~~~~~~-   68 (203)
T cd04105           5 LLGPSDSGKTALFTKLTTGK-YRSTVT--SI--EPNVATFILNSEGKGKKFRLVDVP---GHPK-------LRDKLLET-   68 (203)
T ss_pred             EEcCCCCCHHHHHHHHhcCC-CCCccC--cE--eecceEEEeecCCCCceEEEEECC---CCHH-------HHHHHHHH-
Confidence            36999999999999999875 322111  11  1111111120   36789999999   8642       22222222 


Q ss_pred             HhcCCC-CeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc----cCCeEEEEEecCCCCCC
Q 044972           79 GMAKDG-IHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK----VFDYMIVVFTRGDELED  133 (307)
Q Consensus        79 ~ls~pG-pha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~----~~~~~IVLfT~~D~L~~  133 (307)
                         ..+ ++++|||++.. .+...-..+..++..+|-..    .-..++|+.|+.|....
T Consensus        69 ---~~~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          69 ---LKNSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             ---HhccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence               233 59999999987 44333444555555554321    24578999999997654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.60  E-value=2.2e-07  Score=90.84  Aligned_cols=84  Identities=12%  Similarity=0.001  Sum_probs=57.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~   65 (307)
                      .+|.|||||||++|.|.|.++-.+..  ..+|.....+...+++.+                ++.+||||   ||.....
T Consensus         7 IVG~PNvGKSTLfnaLt~~~~~v~ny--pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~p---GL~~~a~   81 (364)
T PRK09601          7 IVGLPNVGKSTLFNALTKAGAEAANY--PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIA---GLVKGAS   81 (364)
T ss_pred             EECCCCCCHHHHHHHHhCCCCeeccc--ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECC---CCCCCCC
Confidence            47999999999999999988533222  345667777777774432                59999999   9986433


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSV   94 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~   94 (307)
                      ..+.+.....    ......|++|+|+++
T Consensus        82 ~g~glg~~fL----~~i~~aD~li~VVd~  106 (364)
T PRK09601         82 KGEGLGNQFL----ANIREVDAIVHVVRC  106 (364)
T ss_pred             hHHHHHHHHH----HHHHhCCEEEEEEeC
Confidence            2233333322    223468999999986

>cd01882 BMS1 Bms1

Probab=98.59  E-value=3.5e-07  Score=83.37  Aligned_cols=104  Identities=14%  Similarity=0.073  Sum_probs=67.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++|+||||+.|.|++...........+ |  +  ..... .++++++||||   |..          ..+...    .
T Consensus        45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i--~i~~~-~~~~i~~vDtP---g~~----------~~~l~~----a  101 (225)
T cd01882          45 VGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--I--TVVTG-KKRRLTFIECP---NDI----------NAMIDI----A  101 (225)
T ss_pred             ECCCCCCHHHHHHHHHhhcccCccccccc-c--E--EEEec-CCceEEEEeCC---chH----------HHHHHH----H
Confidence            69999999999999998633211111111 1  1  11223 78899999999   742          122222    2


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...|++|||++....++..+...+..+... |   ...+|+|+|++|.+..
T Consensus       102 k~aDvVllviDa~~~~~~~~~~i~~~l~~~-g---~p~vi~VvnK~D~~~~  148 (225)
T cd01882         102 KVADLVLLLIDASFGFEMETFEFLNILQVH-G---FPRVMGVLTHLDLFKK  148 (225)
T ss_pred             HhcCEEEEEEecCcCCCHHHHHHHHHHHHc-C---CCeEEEEEeccccCCc
Confidence            457999999998756777777776666542 2   2345669999998854

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.59  E-value=3.8e-07  Score=78.39  Aligned_cols=112  Identities=16%  Similarity=0.083  Sum_probs=64.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.|||||||++|++++.. |.....  +.+..-......+ ++  ..+.++|||   |..+..           ....
T Consensus         6 l~G~~g~GKTtl~~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~D~~---g~~~~~-----------~~~~   67 (180)
T cd04137           6 VLGSRSVGKSSLTVQFVEGH-FVESYY--PTIENTFSKIIRY-KGQDYHLEIVDTA---GQDEYS-----------ILPQ   67 (180)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CccccC--cchhhhEEEEEEE-CCEEEEEEEEECC---ChHhhH-----------HHHH
Confidence            47999999999999999875 432111  1111111223334 44  457899999   864211           1111


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++++|+++.++-+-+. ...+..+...++. ....+||+.|+.|...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT  120 (180)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence            23457899999998873222222 1222333333332 2346899999999754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04116 Rab9 Rab9 subfamily

Probab=98.57  E-value=6.2e-07  Score=76.27  Aligned_cols=113  Identities=12%  Similarity=-0.029  Sum_probs=63.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      ++|++||||||++|.+++.. |..... .+++.........+ +|.  .+.++|||   |-..       .    .....
T Consensus        10 vvG~~~~GKTsli~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~i~D~~---G~~~-------~----~~~~~   72 (170)
T cd04116          10 LLGDGGVGKSSLMNRYVTNK-FDTQLF-HTIGVEFLNKDLEV-DGHFVTLQIWDTA---GQER-------F----RSLRT   72 (170)
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCcCcC-CceeeEEEEEEEEE-CCeEEEEEEEeCC---ChHH-------H----HHhHH
Confidence            57999999999999999865 443221 12222222334455 665  45678999   8321       1    11112


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccc--cCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKK--VFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~--~~~~~IVLfT~~D~L  131 (307)
                      ....+.|++|+|++++++-+-+.. ..+..+.......  .--.++||.|+.|..
T Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            234678999999988743222221 1222233332211  123678899998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04176 Rap2 Rap2 subgroup

Probab=98.57  E-value=5.2e-07  Score=76.08  Aligned_cols=112  Identities=12%  Similarity=0.037  Sum_probs=65.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.|||||||++|.+++.. |.....  +.+.........+ +|.  .+.|+|||   |.....    .+.       .
T Consensus         6 i~G~~~vGKTsl~~~~~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~----~~~-------~   67 (163)
T cd04176           6 VLGSGGVGKSALTVQFVSGT-FIEKYD--PTIEDFYRKEIEV-DSSPSVLEILDTA---GTEQFA----SMR-------D   67 (163)
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCCCC--CchhheEEEEEEE-CCEEEEEEEEECC---Cccccc----chH-------H
Confidence            37999999999999999865 432221  2112233344555 665  46689999   953221    111       1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|+|+++.++-|-++ ...+..+....+. .-..++||.|+.|...
T Consensus        68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~~  120 (163)
T cd04176          68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLES  120 (163)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchh
Confidence            12357899999999873322122 2233334443321 2357899999999643

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04177 RSR1 RSR1 subgroup

Probab=98.56  E-value=4.8e-07  Score=77.21  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=64.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....+ .+...+ .....+ ++  ..+.++|||   |..+-..        +   ...
T Consensus         7 iG~~~~GKTsli~~~~~~~-~~~~~~~-t~~~~~-~~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~---~~~   68 (168)
T cd04177           7 LGAGGVGKSALTVQFVQNV-FIESYDP-TIEDSY-RKQVEI-DGRQCDLEILDTA---GTEQFTA--------M---REL   68 (168)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCcccCC-cchheE-EEEEEE-CCEEEEEEEEeCC---Ccccchh--------h---hHH
Confidence            6999999999999999775 5432221 111122 223345 55  367889999   8643211        1   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.+++|||+++.++-+-+. ......+...++. .-...||+.|+.|...
T Consensus        69 ~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~  120 (168)
T cd04177          69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLED  120 (168)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccc
Confidence            2356889999998873222222 2233444444432 2346788899998654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.56  E-value=6.1e-07  Score=95.51  Aligned_cols=108  Identities=13%  Similarity=0.034  Sum_probs=75.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+|+|||||+|.|.+.++....  ..+.|.........| +|..|+|+|||   |..+-.       ....    ...
T Consensus       296 mGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~~-~~~~ItfiDTP---Ghe~F~-------~m~~----rga  358 (787)
T PRK05306        296 MGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVET-NGGKITFLDTP---GHEAFT-------AMRA----RGA  358 (787)
T ss_pred             ECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEEE-CCEEEEEEECC---CCccch-------hHHH----hhh
Confidence            599999999999999987654322  234565555566778 89999999999   865421       1111    234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...|++|||++++.....+....+..+..     .-..+||++|+.|...
T Consensus       359 ~~aDiaILVVdAddGv~~qT~e~i~~a~~-----~~vPiIVviNKiDl~~  403 (787)
T PRK05306        359 QVTDIVVLVVAADDGVMPQTIEAINHAKA-----AGVPIIVAINKIDKPG  403 (787)
T ss_pred             hhCCEEEEEEECCCCCCHhHHHHHHHHHh-----cCCcEEEEEECccccc
Confidence            57899999999875566666666554432     2346999999999754

>cd04135 Tc10 TC10 subfamily

Probab=98.56  E-value=6.1e-07  Score=76.43  Aligned_cols=109  Identities=17%  Similarity=0.021  Sum_probs=64.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCc-eeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTK-TCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~-~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|++||||||++|.+++.+ |.....   .|. ..-.....+ ++..  +.++|||   |-.+-..        +.   
T Consensus         5 i~G~~~~GKTsl~~~~~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~~---   65 (174)
T cd04135           5 VVGDGAVGKTCLLMSYANDA-FPEEYV---PTVFDHYAVSVTV-GGKQYLLGLYDTA---GQEDYDR--------LR---   65 (174)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCCCCC---CceeeeeEEEEEE-CCEEEEEEEEeCC---Ccccccc--------cc---
Confidence            36999999999999999876 432221   121 111223345 6654  6789999   8643211        11   


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .....+.|++|||+++.++-+-++  ...+..+...   ....+.+||.|+.|...
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~  118 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRD  118 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhc
Confidence            123567899999998863322121  1223333322   23457899999999654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.55  E-value=1.3e-06  Score=75.70  Aligned_cols=111  Identities=12%  Similarity=0.054  Sum_probs=66.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.+++.+ |.....  +.+.........+ +|.  .+.++|||   |.....        .+   ...
T Consensus         8 vG~~~vGKTsL~~~~~~~~-f~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~l---~~~   69 (172)
T cd04141           8 LGAGGVGKSAVTMQFISHS-FPDYHD--PTIEDAYKQQARI-DNEPALLDILDTA---GQAEFT--------AM---RDQ   69 (172)
T ss_pred             ECCCCCcHHHHHHHHHhCC-CCCCcC--CcccceEEEEEEE-CCEEEEEEEEeCC---CchhhH--------HH---hHH
Confidence            6999999999999999865 532211  1111122233456 774  57889999   864211        11   123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|||+++.++-|-+.... ...+.... ...-.++|||.|+.|...
T Consensus        70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~  121 (172)
T cd04141          70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLES  121 (172)
T ss_pred             HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhh
Confidence            3457899999999875555444321 22333321 112357899999998543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.55  E-value=5.3e-07  Score=89.45  Aligned_cols=132  Identities=15%  Similarity=0.131  Sum_probs=80.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccc--------------c---------------cCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKS--------------K---------------VGSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s--------------~---------------~s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+++|||||.+.||......+              +               ....+.|.........+ ++..++++|
T Consensus        13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~~~i~iiD   91 (426)
T TIGR00483        13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DKYEVTIVD   91 (426)
T ss_pred             EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CCeEEEEEE
Confidence            69999999999999985321100              0               01125666666666777 889999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC---CCHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR---FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R---fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                      ||   |..       .....    +.....+.|++|||+++...   ...+....+. +...+|   ..++||++|+.|.
T Consensus        92 tp---Gh~-------~f~~~----~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~---~~~iIVviNK~Dl  153 (426)
T TIGR00483        92 CP---GHR-------DFIKN----MITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG---INQLIVAINKMDS  153 (426)
T ss_pred             CC---CHH-------HHHHH----HHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC---CCeEEEEEEChhc
Confidence            99   842       22222    22334679999999998744   2222222222 233444   3589999999997


Q ss_pred             CCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972          131 LEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       131 L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ...+...++..     ...++.+++..|
T Consensus       154 ~~~~~~~~~~~-----~~ei~~~~~~~g  176 (426)
T TIGR00483       154 VNYDEEEFEAI-----KKEVSNLIKKVG  176 (426)
T ss_pred             cCccHHHHHHH-----HHHHHHHHHHcC
Confidence            64211222221     234677777765

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.53  E-value=9.3e-07  Score=86.98  Aligned_cols=123  Identities=18%  Similarity=0.101  Sum_probs=77.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      -||=||+||||++|.|.|..+..-..-.  .|-........+++|+.+.+-||-   ||-+ +++..- ..-...-+ ..
T Consensus       197 LvGYTNAGKSTL~N~LT~~~~~~~d~LF--ATLdpttR~~~l~~g~~vlLtDTV---GFI~-~LP~~L-V~AFksTL-EE  268 (411)
T COG2262         197 LVGYTNAGKSTLFNALTGADVYVADQLF--ATLDPTTRRIELGDGRKVLLTDTV---GFIR-DLPHPL-VEAFKSTL-EE  268 (411)
T ss_pred             EEeeccccHHHHHHHHhccCeecccccc--ccccCceeEEEeCCCceEEEecCc---cCcc-cCChHH-HHHHHHHH-HH
Confidence            4789999999999999998876432211  122222334456578999999999   9976 244332 22222111 22


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .-.+|++|+|+++..+.-.+...++..+..-.|-.- .++|+||++.|.+.+
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~-~p~i~v~NKiD~~~~  319 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE-IPIILVLNKIDLLED  319 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC-CCEEEEEecccccCc
Confidence            346899999999874433333334433333333322 799999999998866

>cd04111 Rab39 Rab39 subfamily

Probab=98.53  E-value=3.7e-06  Score=75.56  Aligned_cols=140  Identities=13%  Similarity=0.029  Sum_probs=74.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+ |... +..+++.........+.+|  ..+.|+|||   |....        ..+.   .
T Consensus         7 vvG~~~vGKTsLi~~l~~~~-~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~---G~~~~--------~~~~---~   70 (211)
T cd04111           7 VIGDSTVGKSSLLKRFTEGR-FAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTA---GQERF--------RSIT---R   70 (211)
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCC---cchhH--------HHHH---H
Confidence            36999999999999999876 4321 1112222232223333234  368899999   84211        1111   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++|||+++.++-+-++ ...+..+....+. .....|||.|+.|....  ..    +   .......+.+.++
T Consensus        71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~----v---~~~~~~~~~~~~~  140 (211)
T cd04111          71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQ----V---TREEAEKLAKDLG  140 (211)
T ss_pred             HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cc----c---CHHHHHHHHHHhC
Confidence            23467899999999873322111 1122223333222 12346788899986543  11    1   1123455666666


Q ss_pred             CeEEEEcCC
Q 044972          159 NRRVLFDNK  167 (307)
Q Consensus       159 ~R~~~fnNk  167 (307)
                      -.|+-.+-+
T Consensus       141 ~~~~e~Sak  149 (211)
T cd04111         141 MKYIETSAR  149 (211)
T ss_pred             CEEEEEeCC
Confidence            555544433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.53  E-value=2.6e-06  Score=75.31  Aligned_cols=138  Identities=11%  Similarity=-0.044  Sum_probs=75.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCce--eEEEEEEEeC-C--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT--CEMQRTMLKD-G--QVVNVIDTPAIARLFDSSADFEFVSKEIVK   76 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~--c~~~~~~~~~-G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~k   76 (307)
                      .+|.+||||||++|.+++.. |....   ..|..  .......+ + |  ..+.++|||   |....        ..+. 
T Consensus         5 ivG~~~vGKTsli~~l~~~~-~~~~~---~~t~~~d~~~~~v~~-~~~~~~~l~l~Dt~---G~~~~--------~~~~-   67 (201)
T cd04107           5 VIGDLGVGKTSIIKRYVHGI-FSQHY---KATIGVDFALKVIEW-DPNTVVRLQLWDIA---GQERF--------GGMT-   67 (201)
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCCC---CCceeEEEEEEEEEE-CCCCEEEEEEEECC---Cchhh--------hhhH-
Confidence            47999999999999999865 43222   12222  22223344 4 4  367899999   85211        1111 


Q ss_pred             HHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhc--cccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHH
Q 044972           77 CIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFG--KKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEI  153 (307)
Q Consensus        77 cv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG--~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~L  153 (307)
                        .....+.|++|||+++.++-+-+.. .-+..+...+.  ......+|||.|+.|.....  .    +   ....++.+
T Consensus        68 --~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~--~----~---~~~~~~~~  136 (201)
T cd04107          68 --RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL--A----K---DGEQMDQF  136 (201)
T ss_pred             --HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc--c----c---CHHHHHHH
Confidence              2234689999999998633222221 11222332221  12334789999999975321  0    1   12345666


Q ss_pred             HHhcC-CeEEEEcCC
Q 044972          154 LQLCD-NRRVLFDNK  167 (307)
Q Consensus       154 i~~Cg-~R~~~fnNk  167 (307)
                      .+..+ ..|+...-+
T Consensus       137 ~~~~~~~~~~e~Sak  151 (201)
T cd04107         137 CKENGFIGWFETSAK  151 (201)
T ss_pred             HHHcCCceEEEEeCC
Confidence            66655 345544433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=98.53  E-value=7.7e-07  Score=80.17  Aligned_cols=111  Identities=10%  Similarity=-0.011  Sum_probs=64.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+......  ..+..........+ +|  ..+.|+|||   |...       ... +   ..
T Consensus        17 ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~~-~~~~~~l~l~Dt~---G~~~-------~~~-~---~~   79 (216)
T PLN03110         17 LIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQV-EGKTVKAQIWDTA---GQER-------YRA-I---TS   79 (216)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEE-CCEEEEEEEEECC---CcHH-------HHH-H---HH
Confidence            47999999999999999876332211  11111222333445 55  378889999   8421       111 1   22


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ....+.|++|||+++..+-+-+. ...+..+....+  .-..+|||.|+.|..
T Consensus        80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~  130 (216)
T PLN03110         80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLN  130 (216)
T ss_pred             HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcc
Confidence            33467899999999863222211 122333333322  234789999999853

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.52  E-value=1.5e-06  Score=75.29  Aligned_cols=107  Identities=10%  Similarity=-0.036  Sum_probs=67.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||+++.+.... |...    ..|..+......+ ++..+.++|||   |....        ..+   .....
T Consensus        19 ~G~~~~GKTsL~~~~~~~~-~~~~----~~t~~~~~~~~~~-~~~~l~l~D~~---G~~~~--------~~~---~~~~~   78 (175)
T smart00177       19 VGLDAAGKTTILYKLKLGE-SVTT----IPTIGFNVETVTY-KNISFTVWDVG---GQDKI--------RPL---WRHYY   78 (175)
T ss_pred             EcCCCCCHHHHHHHHhcCC-CCCc----CCccccceEEEEE-CCEEEEEEECC---CChhh--------HHH---HHHHh
Confidence            6999999999999996433 4321    1233343444556 78899999999   86321        111   12235


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL  131 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L  131 (307)
                      .+.|++|||+++.++-+-  ..+...+..++....  -..++||.|+.|..
T Consensus        79 ~~ad~ii~v~D~t~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~  127 (175)
T smart00177       79 TNTQGLIFVVDSNDRDRI--DEAREELHRMLNEDELRDAVILVFANKQDLP  127 (175)
T ss_pred             CCCCEEEEEEECCCHHHH--HHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence            789999999998633221  223345555544322  24688999999854

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04167 Snu114p Snu114p subfamily

Probab=98.52  E-value=6.8e-07  Score=80.17  Aligned_cols=110  Identities=15%  Similarity=0.074  Sum_probs=65.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-----------------CCCCCCceeEEEEEEEe----CCeEEEEEeCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-----------------GSSEDTKTCEMQRTMLK----DGQVVNVIDTPAIARLF   61 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------s~~svT~~c~~~~~~~~----~Gr~v~VIDTP~~~Gl~   61 (307)
                      +|++|+||||+.+.+++........                 ...+.|-........+.    .+..+++||||   |..
T Consensus         6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtp---G~~   82 (213)
T cd04167           6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTP---GHV   82 (213)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECC---CCc
Confidence            6999999999999999754322100                 00111211112222221    23689999999   976


Q ss_pred             CCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           62 DSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        62 Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      +-.       .....    +....|++|+|+++....+......+..+..     .....+||+|+.|.+
T Consensus        83 ~f~-------~~~~~----~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-----~~~p~iiviNK~D~~  136 (213)
T cd04167          83 NFM-------DEVAA----ALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-----EGLPIVLVINKIDRL  136 (213)
T ss_pred             chH-------HHHHH----HHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccC
Confidence            421       11222    2346899999999864555544443333321     126799999999976

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.52  E-value=1.2e-07  Score=80.88  Aligned_cols=50  Identities=14%  Similarity=0.054  Sum_probs=36.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARL   60 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl   60 (307)
                      +|.|||||||++|+|+|...+.++.. .+.|+.-+.  ..  .+..+.+||||   ||
T Consensus       106 ~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~--~~--~~~~~~liDtP---G~  155 (155)
T cd01849         106 IGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQE--VK--LDNKIKLLDTP---GI  155 (155)
T ss_pred             EccCCCCHHHHHHHHHccccccccCC-CCcccceEE--EE--ecCCEEEEECC---CC
Confidence            69999999999999999887765432 234443332  22  34679999999   86

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01892 Miro2 Miro2 subfamily

Probab=98.51  E-value=2.6e-06  Score=73.45  Aligned_cols=110  Identities=8%  Similarity=-0.036  Sum_probs=65.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccc-cccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFK-SKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~-s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.+++.. |. ....+ ++..........+ +|  ..+.+.||+   |-.....        +.   .
T Consensus        10 vG~~~vGKTsli~~~~~~~-f~~~~~~~-T~~~~~~~~~~~~-~~~~~~l~~~d~~---g~~~~~~--------~~---~   72 (169)
T cd01892          10 LGAKGSGKSALLRAFLGRS-FSLNAYSP-TIKPRYAVNTVEV-YGQEKYLILREVG---EDEVAIL--------LN---D   72 (169)
T ss_pred             ECCCCCcHHHHHHHHhCCC-CCcccCCC-ccCcceEEEEEEE-CCeEEEEEEEecC---Ccccccc--------cc---h
Confidence            6999999999999999876 64 32211 2222333344556 67  456778999   7533211        00   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|||+++.++  .....+..++.. +-......+|||.|+.|..+
T Consensus        73 ~~~~~~d~~llv~d~~~~--~s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~  122 (169)
T cd01892          73 AELAACDVACLVYDSSDP--KSFSYCAEVYKK-YFMLGEIPCLFVAAKADLDE  122 (169)
T ss_pred             hhhhcCCEEEEEEeCCCH--HHHHHHHHHHHH-hccCCCCeEEEEEEcccccc
Confidence            123689999999998633  112222333333 21222468999999999644

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.51  E-value=1.5e-06  Score=89.89  Aligned_cols=109  Identities=16%  Similarity=0.088  Sum_probs=72.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+|+||||++|.|.+.+.....  ..+.|.+.......++++..++++|||   |..+..       ..    .....
T Consensus        93 ~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTP---Ghe~F~-------~~----r~rga  156 (587)
T TIGR00487        93 MGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTP---GHEAFT-------SM----RARGA  156 (587)
T ss_pred             ECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECC---CCcchh-------hH----HHhhh
Confidence            599999999999999987644322  234565555555566234499999999   864311       11    11345


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...|+++||++++.....+....+.....     .-..+||++|+.|...
T Consensus       157 ~~aDiaILVVda~dgv~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       157 KVTDIVVLVVAADDGVMPQTIEAISHAKA-----ANVPIIVAINKIDKPE  201 (587)
T ss_pred             ccCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECccccc
Confidence            67899999999874555555555544332     2346999999999753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PTZ00369 Ras-like protein; Provisional

Probab=98.49  E-value=9e-07  Score=77.54  Aligned_cols=111  Identities=16%  Similarity=0.071  Sum_probs=63.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....+ +..... .....+ +|.  .+.++|||   |..+...    +       ..
T Consensus        10 iiG~~~~GKTsLi~~~~~~~-~~~~~~~-t~~~~~-~~~~~~-~~~~~~l~i~Dt~---G~~~~~~----l-------~~   71 (189)
T PTZ00369         10 VVGGGGVGKSALTIQFIQNH-FIDEYDP-TIEDSY-RKQCVI-DEETCLLDILDTA---GQEEYSA----M-------RD   71 (189)
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCcCcCC-chhhEE-EEEEEE-CCEEEEEEEEeCC---CCccchh----h-------HH
Confidence            47999999999999999865 4222211 111111 223345 554  46789999   9654221    1       11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ....+.+++|+|+++.++-|-++ ...+..+...... .--.+|||.|+.|..
T Consensus        72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~  123 (189)
T PTZ00369         72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLD  123 (189)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            23458899999999864333222 1222333332221 123678899999853

>cd04134 Rho3 Rho3 subfamily

Probab=98.48  E-value=8.2e-07  Score=77.89  Aligned_cols=110  Identities=14%  Similarity=0.049  Sum_probs=65.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.+++.. |.....+ ++..... ....+ +|  ..+.++|||   |-....        .+   ...
T Consensus         6 vG~~~vGKTsli~~~~~~~-~~~~~~~-t~~~~~~-~~i~~-~~~~~~l~i~Dt~---G~~~~~--------~l---~~~   67 (189)
T cd04134           6 LGDGACGKTSLLNVFTRGY-FPQVYEP-TVFENYV-HDIFV-DGLHIELSLWDTA---GQEEFD--------RL---RSL   67 (189)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCccCC-cceeeeE-EEEEE-CCEEEEEEEEECC---CChhcc--------cc---ccc
Confidence            6999999999999999865 4322111 1111221 22334 55  468899999   853211        11   123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|+|+||++++++-+-+.  ...+..+....   ....+|||.|+.|....
T Consensus        68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~  119 (189)
T cd04134          68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA  119 (189)
T ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence            4578999999999874422222  12233343321   23578999999986543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.48  E-value=1.9e-06  Score=73.40  Aligned_cols=107  Identities=11%  Similarity=0.031  Sum_probs=64.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+.... |.+..    .|.......... .+..+.++|||   |...       . ..+   .....
T Consensus         6 ~G~~~~GKTsli~~l~~~~-~~~~~----pt~g~~~~~~~~-~~~~~~l~D~~---G~~~-------~-~~~---~~~~~   65 (159)
T cd04150           6 VGLDAAGKTTILYKLKLGE-IVTTI----PTIGFNVETVEY-KNISFTVWDVG---GQDK-------I-RPL---WRHYF   65 (159)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CcccC----CCCCcceEEEEE-CCEEEEEEECC---CCHh-------H-HHH---HHHHh
Confidence            6999999999999996543 43211    122222334455 77899999999   8632       0 111   11234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL  131 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L  131 (307)
                      .+.|++|||+++.++-+-  ..+...+..+.....  -..++|+.|+.|..
T Consensus        66 ~~ad~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  114 (159)
T cd04150          66 QNTQGLIFVVDSNDRERI--GEAREELQRMLNEDELRDAVLLVFANKQDLP  114 (159)
T ss_pred             cCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence            688999999998632111  112333444433221  25788899999854

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=2.4e-05  Score=74.19  Aligned_cols=119  Identities=17%  Similarity=0.234  Sum_probs=70.1

Q ss_pred             CCCCCCCCcHHHHHHHHHCCCccccccCCC--------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC---cCH--
Q 044972            1 SCACEYIKICTTTGNSILGRRAFKSKVGSS--------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS---ADF--   67 (307)
Q Consensus         1 ~~~~~tGsGKSStgNsILG~~~F~s~~s~~--------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~---~~~--   67 (307)
                      .|+|+||-||||++++++..+ |.+.+++.        +.|-..+.....    -.++||||-   ||.|--   .+-  
T Consensus        46 lCvGETg~GKsTLmdtLFNt~-f~~~p~~H~~~~V~L~~~TyelqEsnvr----lKLtiv~tv---GfGDQinK~~Syk~  117 (406)
T KOG3859|consen   46 LCVGETGLGKSTLMDTLFNTK-FESEPSTHTLPNVKLQANTYELQESNVR----LKLTIVDTV---GFGDQINKEDSYKP  117 (406)
T ss_pred             EEeccCCccHHHHHHHHhccc-cCCCCCccCCCCceeecchhhhhhcCee----EEEEEEeec---ccccccCcccccch
Confidence            399999999999999999876 66554432        112111111112    389999999   998631   110  


Q ss_pred             ----------HHHHHH--HHHHHHhc-CCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           68 ----------EFVSKE--IVKCIGMA-KDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        68 ----------~~i~~e--I~kcv~ls-~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                                .-+.+|  |.+.+..+ ...+||.|+.+... -.+-.-|.-+++.+-+      .-++|-|+.++|....
T Consensus       118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds------kVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS------KVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh------hhhhHHHHHHhhhhhH
Confidence                      112333  44444433 34799999988543 2344445444444432      3456667777776554

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.48  E-value=3.2e-07  Score=86.07  Aligned_cols=60  Identities=17%  Similarity=0.035  Sum_probs=44.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF   69 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~   69 (307)
                      .+|.|||||||++|+|+|.+...++. ..++|+.++.  ..+  +..+.|||||   |+..+...+.+
T Consensus       123 ~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtP---G~~~~~~~~~~  182 (276)
T TIGR03596       123 IVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQW--IKL--SDGLELLDTP---GILWPKFEDQE  182 (276)
T ss_pred             EECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEE--EEe--CCCEEEEECC---CcccCCCCchH
Confidence            47999999999999999998776643 3456766543  223  4478999999   99776654443

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd04117 Rab15 Rab15 subfamily

Probab=98.48  E-value=3.7e-06  Score=71.56  Aligned_cols=111  Identities=14%  Similarity=0.034  Sum_probs=64.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||+++.+++.. |.... ...+...+......+ +|.  .+.+.|||   |.....        .+   ...
T Consensus         6 vG~~~~GKTsli~~~~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~---g~~~~~--------~~---~~~   68 (161)
T cd04117           6 IGDSGVGKTCLLCRFTDNE-FHSSH-ISTIGVDFKMKTIEV-DGIKVRIQIWDTA---GQERYQ--------TI---TKQ   68 (161)
T ss_pred             ECcCCCCHHHHHHHHhcCC-CCCCC-CCceeeEEEEEEEEE-CCEEEEEEEEeCC---CcHhHH--------hh---HHH
Confidence            6999999999999999876 53221 112222333344455 663  57789999   853211        11   122


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~  132 (307)
                      ...++|++++|+++.++=+-++  +..++..+.... ....++||-|+.|..+
T Consensus        69 ~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  119 (161)
T cd04117          69 YYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKADEEQ  119 (161)
T ss_pred             HhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            3458899999999874322222  223333322211 1246788888888644

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.47  E-value=1.8e-06  Score=74.06  Aligned_cols=111  Identities=16%  Similarity=0.028  Sum_probs=67.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      ..|++||||||+++++++.. |.....+.  +.........+ +|  ..+.++|||   |......        +   ..
T Consensus         5 i~G~~~~GKtsl~~~~~~~~-~~~~~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~---~~   66 (173)
T cd04130           5 LVGDGAVGKTSLIVSYTTNG-YPTEYVPT--AFDNFSVVVLV-DGKPVRLQLCDTA---GQDEFDK--------L---RP   66 (173)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCCCCCCc--eeeeeeEEEEE-CCEEEEEEEEECC---CChhhcc--------c---cc
Confidence            36999999999999999864 65433221  11122223445 66  367789999   8632110        1   12


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .+..+.|++|+|+++.++-+-+.  ...+..+....   .-..++|+.|+.|....
T Consensus        67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  119 (173)
T cd04130          67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTD  119 (173)
T ss_pred             cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccC
Confidence            34568999999999874433222  22333444321   12578999999996543

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.47  E-value=2.7e-07  Score=77.62  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|.|||||||++|+|+|........ ..+.|+.  .....+ ++ .+.+||||   |+.-
T Consensus        89 ~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~--~~~~~~-~~-~~~i~Dtp---G~~~  140 (141)
T cd01857          89 VGYPNVGKSSLINALVGKKKVSVSA-TPGKTKH--FQTIFL-TP-TITLCDCP---GLVF  140 (141)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeCC-CCCcccc--eEEEEe-CC-CEEEEECC---CcCC
Confidence            5999999999999999988664332 2233433  233445 44 68999999   9863

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.46  E-value=1.7e-06  Score=91.65  Aligned_cols=109  Identities=13%  Similarity=0.075  Sum_probs=71.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe---CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK---DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+|+||||++|.|++.....+..  .+.|.........|.   .+..++++|||   |..       .......+   
T Consensus       250 vGhvdvGKTSLld~L~~~~~~~~e~--~GiTq~i~~~~v~~~~~~~~~kItfiDTP---Ghe-------~F~~mr~r---  314 (742)
T CHL00189        250 LGHVDHGKTTLLDKIRKTQIAQKEA--GGITQKIGAYEVEFEYKDENQKIVFLDTP---GHE-------AFSSMRSR---  314 (742)
T ss_pred             ECCCCCCHHHHHHHHHhccCccccC--CccccccceEEEEEEecCCceEEEEEECC---cHH-------HHHHHHHH---
Confidence            6999999999999999876443222  234443333333342   35899999999   852       22222222   


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                       ...+.|++|||+++......+....+..+..     .-.++||++|+.|...
T Consensus       315 -g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~  361 (742)
T CHL00189        315 -GANVTDIAILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKAN  361 (742)
T ss_pred             -HHHHCCEEEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCccc
Confidence             3357899999999875666666666655432     2357999999999764

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.46  E-value=4.8e-06  Score=72.94  Aligned_cols=108  Identities=10%  Similarity=-0.035  Sum_probs=66.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||+++.+.... |...    ..|..+....... ++..+.++|||   |-.       .. ..+   ....
T Consensus        22 ivG~~~~GKTsl~~~l~~~~-~~~~----~pt~g~~~~~~~~-~~~~~~i~D~~---Gq~-------~~-~~~---~~~~   81 (181)
T PLN00223         22 MVGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEY-KNISFTVWDVG---GQD-------KI-RPL---WRHY   81 (181)
T ss_pred             EECCCCCCHHHHHHHHccCC-Cccc----cCCcceeEEEEEE-CCEEEEEEECC---CCH-------HH-HHH---HHHH
Confidence            37999999999999998543 4321    2233343444556 78899999999   841       11 111   1223


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL  131 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L  131 (307)
                      ..+.|+++||+++.++-+-  ..+...+..++....  -...+||.++.|..
T Consensus        82 ~~~a~~iI~V~D~s~~~s~--~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~  131 (181)
T PLN00223         82 FQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
T ss_pred             hccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence            4789999999998632111  123344555543322  24688888998854

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.45  E-value=1.7e-06  Score=80.32  Aligned_cols=122  Identities=17%  Similarity=0.174  Sum_probs=79.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccC---CCCCCceeEEEEEE--Ee-CC--eEEEEEeCCCCCCCCCCCcCH---HH-
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVG---SSEDTKTCEMQRTM--LK-DG--QVVNVIDTPAIARLFDSSADF---EF-   69 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s---~~svT~~c~~~~~~--~~-~G--r~v~VIDTP~~~Gl~Dt~~~~---~~-   69 (307)
                      .||.+|.||||++||+....+..+..+   +.+++++.+.+..+  +. +|  -+++|||||   ||.|---.+   +- 
T Consensus        51 VVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTP---GfGDqInN~ncWePI  127 (336)
T KOG1547|consen   51 VVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTP---GFGDQINNDNCWEPI  127 (336)
T ss_pred             EEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCC---CcccccCccchhHHH
Confidence            379999999999999998877664322   23445555444322  21 33  389999999   998741110   11 


Q ss_pred             -----------HHHHHHHH--HHhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           70 -----------VSKEIVKC--IGMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        70 -----------i~~eI~kc--v~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                                 +.+|+.-.  -....-.+|+.|+.++.. -.+..-|...++.+.+      .-++|-|+.++|.|.
T Consensus       128 ~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~------vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  128 EKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE------VVNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh------hheeeeeEeeccccc
Confidence                       22222211  112233689999999865 3577778888888876      468899999999863

>PRK12740 elongation factor G; Reviewed

Probab=98.45  E-value=2.2e-06  Score=89.70  Aligned_cols=111  Identities=16%  Similarity=0.133  Sum_probs=73.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|++|+|||||.|.||......+...                ..+.|-........| +|..+++||||   |..+    
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtP---G~~~----   72 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTP---GHVD----   72 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECC---CcHH----
Confidence            59999999999999976543322110                012333444456778 99999999999   8753    


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                         ...+...++    ...|++|+|++.....+......+..+..     .-...||++|+.|....
T Consensus        73 ---~~~~~~~~l----~~aD~vllvvd~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         73 ---FTGEVERAL----RVLDGAVVVVCAVGGVEPQTETVWRQAEK-----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             ---HHHHHHHHH----HHhCeEEEEEeCCCCcCHHHHHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence               122233322    35899999999875666666665555443     13468889999997643

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.44  E-value=1.8e-06  Score=79.01  Aligned_cols=110  Identities=17%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC--------------CCCCceeEEEEEEEe-C--------CeEEEEEeCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------SEDTKTCEMQRTMLK-D--------GQVVNVIDTPAIAR   59 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------~svT~~c~~~~~~~~-~--------Gr~v~VIDTP~~~G   59 (307)
                      +|..++|||||.++|+......+....              .+.|-.....+..+. .        +..+++||||   |
T Consensus         6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP---G   82 (222)
T cd01885           6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP---G   82 (222)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC---C
Confidence            699999999999999865432211100              112222211222331 1        6789999999   9


Q ss_pred             CCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           60 LFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        60 l~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ..+-       ..+..    .+..+.|++|||+++...++.+....+.....   .  -...||+.++.|.+
T Consensus        83 ~~~f-------~~~~~----~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~--~~p~ilviNKiD~~  138 (222)
T cd01885          83 HVDF-------SSEVT----AALRLCDGALVVVDAVEGVCVQTETVLRQALK---E--RVKPVLVINKIDRL  138 (222)
T ss_pred             cccc-------HHHHH----HHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEECCCcc
Confidence            8652       12222    23356899999999876677777666555443   1  23689999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.44  E-value=3.1e-06  Score=78.38  Aligned_cols=113  Identities=17%  Similarity=0.093  Sum_probs=67.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|  ..|.++|||   |..+-.        .+.   .
T Consensus         5 vlG~~gvGKTSLi~r~~~~~-f~~~y~--pTi~d~~~k~~~i-~~~~~~l~I~Dt~---G~~~~~--------~~~---~   66 (247)
T cd04143           5 VLGASKVGKTAIVSRFLGGR-FEEQYT--PTIEDFHRKLYSI-RGEVYQLDILDTS---GNHPFP--------AMR---R   66 (247)
T ss_pred             EECcCCCCHHHHHHHHHcCC-CCCCCC--CChhHhEEEEEEE-CCEEEEEEEEECC---CChhhh--------HHH---H
Confidence            37999999999999999765 653321  1111222333456 66  467899999   864311        111   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhc-------cccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFG-------KKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG-------~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|+||||++++++-+=++ ...+..+.....       ...-..+||+.|+.|...
T Consensus        67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            23457899999999874433222 223333433211       112457899999999754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.44  E-value=1.8e-06  Score=73.63  Aligned_cols=110  Identities=15%  Similarity=0.040  Sum_probs=63.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||+++.+++.. |.....+ ++.... .....+ +|.  .+.++|||   |..+...        +   ...
T Consensus         7 iG~~~~GKTsl~~~~~~~~-~~~~~~~-t~~~~~-~~~~~~-~~~~~~l~i~Dt~---G~~~~~~--------~---~~~   68 (175)
T cd01870           7 VGDGACGKTCLLIVFSKDQ-FPEVYVP-TVFENY-VADIEV-DGKQVELALWDTA---GQEDYDR--------L---RPL   68 (175)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCCCC-ccccce-EEEEEE-CCEEEEEEEEeCC---Cchhhhh--------c---ccc
Confidence            6999999999999999864 5422211 111111 223345 665  57899999   8643211        1   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++++|+.++++-+-+.  ...+..+....   .-.+++||.|+.|....
T Consensus        69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  120 (175)
T cd01870          69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND  120 (175)
T ss_pred             ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC
Confidence            3468899999999874321111  11222333221   13578999999996543

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.43  E-value=1.8e-06  Score=89.44  Aligned_cols=110  Identities=14%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------------CCeEEEEEeCCCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------------DGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------------~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      .+|.+|+||||++|.|+|.......  +...|.+--.....++                 .-..++|+|||   |..+  
T Consensus         9 IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTp---G~e~--   81 (590)
T TIGR00491         9 VLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTP---GHEA--   81 (590)
T ss_pred             EECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECC---CcHh--
Confidence            3699999999999999998643221  1223332111111110                 00248999999   8532  


Q ss_pred             cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                           ...    .......+.|++|||+++...++.+....+..+...     -...||++|+.|...
T Consensus        82 -----f~~----l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        82 -----FTN----LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP  135 (590)
T ss_pred             -----HHH----HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence                 111    112234689999999998766777777777665432     346899999999764

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PLN03108 Rab family protein; Provisional

Probab=98.41  E-value=7e-06  Score=73.55  Aligned_cols=112  Identities=10%  Similarity=0.027  Sum_probs=63.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.+ |..... ..++.........+ +|.  .+.++|||   |.-.       . ..+..   
T Consensus        11 ivG~~gvGKStLi~~l~~~~-~~~~~~-~ti~~~~~~~~i~~-~~~~i~l~l~Dt~---G~~~-------~-~~~~~---   73 (210)
T PLN03108         11 IIGDTGVGKSCLLLQFTDKR-FQPVHD-LTIGVEFGARMITI-DNKPIKLQIWDTA---GQES-------F-RSITR---   73 (210)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCCCCC-CCccceEEEEEEEE-CCEEEEEEEEeCC---CcHH-------H-HHHHH---
Confidence            47999999999999999875 332111 12222222233455 664  56799999   8421       1 11111   


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|||+++.++-+-+.. ..+..+....+  .-..+|||.|+.|...
T Consensus        74 ~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~  125 (210)
T PLN03108         74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH  125 (210)
T ss_pred             HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence            123478999999998632221211 12222333322  2346889999988644

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=7.8e-05  Score=77.47  Aligned_cols=112  Identities=18%  Similarity=0.178  Sum_probs=78.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEE--------------------------------------------
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEM--------------------------------------------   38 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~--------------------------------------------   38 (307)
                      .|.|++||||++|++|-+++..++..   .|+.|-.                                            
T Consensus       115 fGrts~GKSt~iNAmL~~klLP~g~g---h~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~sL  191 (749)
T KOG0448|consen  115 FGRTSAGKSTVINAMLHKKLLPSGIG---HTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAGSL  191 (749)
T ss_pred             eCCCCCcHHHHHHHHHHHhhCccccc---ccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcceE
Confidence            59999999999999999987766543   2333321                                            


Q ss_pred             EEEEEeCC------eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972           39 QRTMLKDG------QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL  112 (307)
Q Consensus        39 ~~~~~~~G------r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~  112 (307)
                      .+.-||++      -.|++||.|   |+.-+.    .....|-+    +...+|+|+||+.+.+.+|..+++.+...-+-
T Consensus       192 lrV~~p~~~csLLrnDivliDsP---Gld~~s----e~tswid~----~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~  260 (749)
T KOG0448|consen  192 LRVFWPDDKCSLLRNDIVLIDSP---GLDVDS----ELTSWIDS----FCLDADVFVLVVNAENTLTLSEKQFFHKVSEE  260 (749)
T ss_pred             EEEEecCccchhhhccceeccCC---CCCCch----hhhHHHHH----HhhcCCeEEEEecCccHhHHHHHHHHHHhhcc
Confidence            11133344      278999999   986322    11222322    23468999999999999999999888776652


Q ss_pred             hccccCCeEEEEEecCCCCCC
Q 044972          113 FGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus       113 FG~~~~~~~IVLfT~~D~L~~  133 (307)
                           ..|+.||-.+||....
T Consensus       261 -----KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  261 -----KPNIFILNNKWDASAS  276 (749)
T ss_pred             -----CCcEEEEechhhhhcc
Confidence                 6788999999998754

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.39  E-value=3.1e-06  Score=73.50  Aligned_cols=107  Identities=19%  Similarity=-0.000  Sum_probs=62.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCcee-EEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC-EMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c-~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++..+++.. |.....+   |... ......+ +|  ..+.+.|||   |..+..        .+.   .
T Consensus         7 iG~~~vGKSsli~~~~~~~-f~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~---~   67 (174)
T cd01871           7 VGDGAVGKTCLLISYTTNA-FPGEYIP---TVFDNYSANVMV-DGKPVNLGLWDTA---GQEDYD--------RLR---P   67 (174)
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCcCCC---cceeeeEEEEEE-CCEEEEEEEEECC---Cchhhh--------hhh---h
Confidence            6999999999999999754 5433221   2111 1122345 66  467899999   853211        111   2


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ....+.|++|||+++.++-|-+..  ..+..+... .  -..++|||.|+.|..
T Consensus        68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~--~~~piilvgnK~Dl~  118 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-C--PNTPIILVGTKLDLR  118 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEeeChhhc
Confidence            345689999999999733222221  122223322 1  135789999999854

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PRK12288 GTPase RsgA; Reviewed

Probab=98.38  E-value=3.9e-07  Score=88.67  Aligned_cols=54  Identities=15%  Similarity=0.097  Sum_probs=36.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCC------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSS------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDS   63 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt   63 (307)
                      +|.||||||||+|+|+|.....++.-+.      -.|+..+...  ++.|  ..|||||   ||-.-
T Consensus       211 vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~--l~~~--~~liDTP---Gir~~  270 (347)
T PRK12288        211 VGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYH--FPHG--GDLIDSP---GVREF  270 (347)
T ss_pred             ECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEE--ecCC--CEEEECC---CCCcc
Confidence            7999999999999999998776543322      1344444333  3222  2599999   77543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.35  E-value=9.7e-06  Score=84.15  Aligned_cols=110  Identities=16%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             CCCCCCcHHHHHHHHHCC-CccccccC-------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGR-RAFKSKVG-------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~-~~F~s~~s-------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|..++|||||.+.||.. ..|.....             ..+.|-.+......| +|..+++||||   |..|      
T Consensus         7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTP---Gh~D------   76 (594)
T TIGR01394         7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTP---GHAD------   76 (594)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECC---CHHH------
Confidence            699999999999999964 23422110             123455555566788 99999999999   8744      


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                       ...++.+++    ..+|++|||+++......+.+..+..+.. +    -...||++|+.|...
T Consensus        77 -F~~ev~~~l----~~aD~alLVVDa~~G~~~qT~~~l~~a~~-~----~ip~IVviNKiD~~~  130 (594)
T TIGR01394        77 -FGGEVERVL----GMVDGVLLLVDASEGPMPQTRFVLKKALE-L----GLKPIVVINKIDRPS  130 (594)
T ss_pred             -HHHHHHHHH----HhCCEEEEEEeCCCCCcHHHHHHHHHHHH-C----CCCEEEEEECCCCCC
Confidence             223444333    35799999999864455555555555544 2    235789999999654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.35  E-value=1.4e-07  Score=82.52  Aligned_cols=56  Identities=20%  Similarity=0.032  Sum_probs=31.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|++||||||++|+|+|...+.++.-      ....|+..+...  +++  ...|||||   ||.+...
T Consensus        41 ~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l~~--g~~iIDTP---Gf~~~~l  102 (161)
T PF03193_consen   41 LGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--LPD--GGYIIDTP---GFRSFGL  102 (161)
T ss_dssp             ECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--ETT--SEEEECSH---HHHT--G
T ss_pred             ECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--cCC--CcEEEECC---CCCcccc
Confidence            69999999999999999866544221      122333433332  322  45899999   9876554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13351 elongation factor G; Reviewed

Probab=98.34  E-value=4.3e-06  Score=87.83  Aligned_cols=111  Identities=16%  Similarity=0.123  Sum_probs=73.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|..|+||||+.|.++......+..+                ..+.|-.+......| .+..+++||||   |..|.   
T Consensus        14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtP---G~~df---   86 (687)
T PRK13351         14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTP---GHIDF---   86 (687)
T ss_pred             ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECC---CcHHH---
Confidence            69999999999999985421111000                123344444556778 99999999999   97541   


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                          ..+...+    ....|++|||+++....+.+....+..+...     -...+|++|+.|....
T Consensus        87 ----~~~~~~~----l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~  140 (687)
T PRK13351         87 ----TGEVERS----LRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA  140 (687)
T ss_pred             ----HHHHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence                1223322    3467999999998756666666666554432     3467889999997643

>PRK10218 GTP-binding protein; Provisional

Probab=98.33  E-value=3.8e-06  Score=87.28  Aligned_cols=110  Identities=17%  Similarity=0.099  Sum_probs=74.3

Q ss_pred             CCCCCCcHHHHHHHHHCC-CccccccC-------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGR-RAFKSKVG-------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~-~~F~s~~s-------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|..|+|||||.+.+|+. ..|.....             ..+.|-.+......| ++..+++||||   |..|..    
T Consensus        11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTP---G~~df~----   82 (607)
T PRK10218         11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTP---GHADFG----   82 (607)
T ss_pred             ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECC---CcchhH----
Confidence            699999999999999974 33432211             123444444556678 89999999999   875522    


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                         .++..    .....|++|||+++......+.+..+..+...     -...||++|+.|...
T Consensus        83 ---~~v~~----~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~~  134 (607)
T PRK10218         83 ---GEVER----VMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-----GLKPIVVINKVDRPG  134 (607)
T ss_pred             ---HHHHH----HHHhCCEEEEEEecccCccHHHHHHHHHHHHc-----CCCEEEEEECcCCCC
Confidence               12222    23578999999998756666666666655442     345689999999653

>PTZ00416 elongation factor 2; Provisional

Probab=98.33  E-value=1.7e-06  Score=92.91  Aligned_cols=139  Identities=12%  Similarity=0.055  Sum_probs=85.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCC--------------CCCceeEEEEEEEeC----------CeEEEEEeCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSS--------------EDTKTCEMQRTMLKD----------GQVVNVIDTPAI   57 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~--------------svT~~c~~~~~~~~~----------Gr~v~VIDTP~~   57 (307)
                      .+|..++|||||.+.||+.....+.....              +.|-.+......| .          +..+++||||  
T Consensus        24 iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~~~~~~~~~~~i~liDtP--  100 (836)
T PTZ00416         24 VIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYY-EHDLEDGDDKQPFLINLIDSP--  100 (836)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEe-ecccccccCCCceEEEEEcCC--
Confidence            37999999999999999854432211110              1111111123344 3          6789999999  


Q ss_pred             CCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC-Ccc
Q 044972           58 ARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED-NDE  136 (307)
Q Consensus        58 ~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~-~~~  136 (307)
                       |..|       ...++.    .+....|+.|||+++...++.+...+++.+...     ..++||++|+.|.+-- -+.
T Consensus       101 -G~~~-------f~~~~~----~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~~~~~~~  163 (836)
T PTZ00416        101 -GHVD-------FSSEVT----AALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRAILELQL  163 (836)
T ss_pred             -CHHh-------HHHHHH----HHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhhhhhcCC
Confidence             9865       223333    334678999999998767888888777766642     3578999999998621 113


Q ss_pred             cHHHhcCCCCCchHHHHHHhcCCeEEEEc
Q 044972          137 TLEDYLGPECPKPLKEILQLCDNRRVLFD  165 (307)
Q Consensus       137 sie~yl~~~~~~~Lk~Li~~Cg~R~~~fn  165 (307)
                      +.+++..     .+..+|+....++..|+
T Consensus       164 ~~~~~~~-----~~~~ii~~in~~l~~~~  187 (836)
T PTZ00416        164 DPEEIYQ-----NFVKTIENVNVIIATYN  187 (836)
T ss_pred             CHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence            4444333     35666666654443333

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.32  E-value=2.9e-06  Score=85.09  Aligned_cols=133  Identities=14%  Similarity=0.090  Sum_probs=79.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC---------------------cc----cccc----CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRR---------------------AF----KSKV----GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~---------------------~F----~s~~----s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|..++|||||...||..-                     .|    ....    ...+.|.........+ +++.+++||
T Consensus        13 ~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~~~i~lID   91 (446)
T PTZ00141         13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYYFTIID   91 (446)
T ss_pred             EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CCeEEEEEE
Confidence            6999999999999887421                     01    0000    0124455555555677 899999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-C------CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-F------SEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-f------T~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |..       +...++.    .+...+|+.|||+++... |      ..+.+..+..+..+    -..+.||++|
T Consensus        92 tP---Gh~-------~f~~~~~----~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~----gi~~iiv~vN  153 (446)
T PTZ00141         92 AP---GHR-------DFIKNMI----TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL----GVKQMIVCIN  153 (446)
T ss_pred             CC---ChH-------HHHHHHH----HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc----CCCeEEEEEE
Confidence            99   842       2333333    334578999999998632 2      23444444444332    3578899999


Q ss_pred             cCCCC--CCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972          127 RGDEL--EDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus       127 ~~D~L--~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      +.|..  +-+...++..+     ..++.++...|.
T Consensus       154 KmD~~~~~~~~~~~~~i~-----~~i~~~l~~~g~  183 (446)
T PTZ00141        154 KMDDKTVNYSQERYDEIK-----KEVSAYLKKVGY  183 (446)
T ss_pred             ccccccchhhHHHHHHHH-----HHHHHHHHhcCC
Confidence            99942  21112233222     246777766553

>PRK12289 GTPase RsgA; Reviewed

Probab=98.32  E-value=5e-07  Score=88.10  Aligned_cols=56  Identities=18%  Similarity=0.102  Sum_probs=37.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCC------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSS------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|+|||||||++|+|+|.....++.-+.      ..|+..+..  .+++|.  .|||||   ||.....
T Consensus       178 iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g~--~liDTP---G~~~~~l  239 (352)
T PRK12289        178 AGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNGG--LLADTP---GFNQPDL  239 (352)
T ss_pred             EeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCCc--EEEeCC---Ccccccc
Confidence            7999999999999999987765443221      135544433  232332  799999   9875543

>cd04126 Rab20 Rab20 subfamily

Probab=98.32  E-value=6.9e-06  Score=74.96  Aligned_cols=108  Identities=20%  Similarity=0.059  Sum_probs=66.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+++.+ |...    ..|.........+ ....+.|+|||   |.-...    .    +.   ....
T Consensus         6 vG~~~vGKTSLi~r~~~~~-f~~~----~~Tig~~~~~~~~-~~~~l~iwDt~---G~e~~~----~----l~---~~~~   65 (220)
T cd04126           6 LGDMNVGKTSLLHRYMERR-FKDT----VSTVGGAFYLKQW-GPYNISIWDTA---GREQFH----G----LG---SMYC   65 (220)
T ss_pred             ECCCCCcHHHHHHHHhcCC-CCCC----CCccceEEEEEEe-eEEEEEEEeCC---Ccccch----h----hH---HHHh
Confidence            6999999999999999876 4321    1233333333345 56689999999   853211    1    11   1224


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .+.|++|||+++.++-|-++.. .+..+....++  -..+|||.|+.|...
T Consensus        66 ~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~  114 (220)
T cd04126          66 RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE  114 (220)
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence            6899999999987543333321 22223333222  246889999999654

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.31  E-value=8.1e-06  Score=70.90  Aligned_cols=108  Identities=18%  Similarity=0.048  Sum_probs=65.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEE-EEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEM-QRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~-~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||+++.+++.. |....   ..|..... ....+ +|  ..+.+.|||   |-....        .+.   .
T Consensus         7 vG~~~vGKTsl~~~~~~~~-f~~~~---~pt~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~---~   67 (175)
T cd01874           7 VGDGAVGKTCLLISYTTNK-FPSEY---VPTVFDNYAVTVMI-GGEPYTLGLFDTA---GQEDYD--------RLR---P   67 (175)
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCCCC---CCceeeeeEEEEEE-CCEEEEEEEEECC---Cccchh--------hhh---h
Confidence            6999999999999999864 64322   22322211 13345 66  467799999   874321        111   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|+||||+++.++-|-+..  ..+..+... .+  -.++|||-|+.|...
T Consensus        68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~-~~--~~piilvgnK~Dl~~  119 (175)
T cd01874          68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CP--KTPFLLVGTQIDLRD  119 (175)
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEECHhhhh
Confidence            244688999999998744333322  123333332 22  357899999998643

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.29  E-value=7.3e-06  Score=74.15  Aligned_cols=108  Identities=14%  Similarity=-0.044  Sum_probs=63.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEE--EEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQ--RTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~--~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      .+|.+||||||+++.++..+ |.....   .|..+...  .... ++  ..+.++|||   |.....        .+.  
T Consensus        18 vvG~~gvGKTsli~~~~~~~-f~~~~~---~tig~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~--------~~~--   79 (219)
T PLN03071         18 IVGDGGTGKTTFVKRHLTGE-FEKKYE---PTIGVEVHPLDFFT-NCGKIRFYCWDTA---GQEKFG--------GLR--   79 (219)
T ss_pred             EECcCCCCHHHHHHHHhhCC-CCCccC---CccceeEEEEEEEE-CCeEEEEEEEECC---Cchhhh--------hhh--
Confidence            37999999999999987654 543222   23223222  2223 33  488999999   863311        111  


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                       .....+.|++|||+++.++-+-+.. ..+..+....   --..+|||.|+.|..
T Consensus        80 -~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~  130 (219)
T PLN03071         80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK  130 (219)
T ss_pred             -HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhh
Confidence             1234688999999998754333221 2223333321   235788999998853

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.29  E-value=7.8e-07  Score=82.36  Aligned_cols=54  Identities=17%  Similarity=-0.004  Sum_probs=36.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      +|+|||||||++|.|+|.....++.-+      ...|+..+.... - +|   .|||||   ||....
T Consensus       126 ~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~-~~---~liDtP---G~~~~~  185 (245)
T TIGR00157       126 AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-H-GG---LIADTP---GFNEFG  185 (245)
T ss_pred             ECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-C-Cc---EEEeCC---CccccC
Confidence            699999999999999998766543221      124555554432 1 33   899999   886544

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd04120 Rab12 Rab12 subfamily

Probab=98.28  E-value=1.2e-05  Score=72.35  Aligned_cols=110  Identities=10%  Similarity=0.026  Sum_probs=67.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|..||||||+++.++... |..... .+++..+......+ +|  ..+.+.|||   |-...        ..+   ...
T Consensus         6 lG~~gVGKTSli~r~~~~~-f~~~~~-~Ti~~~~~~~~i~~-~~~~v~l~iwDta---Gqe~~--------~~l---~~~   68 (202)
T cd04120           6 IGSRGVGKTSLMRRFTDDT-FCEACK-SGVGVDFKIKTVEL-RGKKIRLQIWDTA---GQERF--------NSI---TSA   68 (202)
T ss_pred             ECcCCCCHHHHHHHHHhCC-CCCcCC-CcceeEEEEEEEEE-CCEEEEEEEEeCC---Cchhh--------HHH---HHH
Confidence            6999999999999999754 654322 22233444445566 77  467899999   85211        111   123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ...+.|++|||+++.++-|-++.. -+..+....++  --.+|||-|+.|..
T Consensus        69 y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~  118 (202)
T cd04120          69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCE  118 (202)
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccc
Confidence            456899999999987443333321 22333333322  24678888988854

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=98.27  E-value=1.4e-05  Score=70.96  Aligned_cols=137  Identities=13%  Similarity=0.008  Sum_probs=79.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|..||||||+++.+.+.. |..... ..++..+......+ +|  ..+.|.|||   |....        ..+.   ..
T Consensus        12 iG~~~vGKTsll~~~~~~~-~~~~~~-~t~~~~~~~~~i~~-~~~~~~l~iwDt~---G~~~~--------~~l~---~~   74 (189)
T cd04121          12 VGDSDVGKGEILASLQDGS-TESPYG-YNMGIDYKTTTILL-DGRRVKLQLWDTS---GQGRF--------CTIF---RS   74 (189)
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCCCCC-CcceeEEEEEEEEE-CCEEEEEEEEeCC---CcHHH--------HHHH---HH
Confidence            6999999999999999753 543322 12333443444455 77  467889999   86321        1111   12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|+||||+++.++-|-+... -+..+...+ +  --..|||-|+.|.-..  ..    +.   ....+.+.+..+-
T Consensus        75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~~--~~----v~---~~~~~~~a~~~~~  142 (189)
T cd04121          75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAFK--RQ----VA---TEQAQAYAERNGM  142 (189)
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchhc--cC----CC---HHHHHHHHHHcCC
Confidence            346899999999997544433322 233333322 2  3467888888885332  11    11   1235666666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+-..-++
T Consensus       143 ~~~e~SAk~  151 (189)
T cd04121         143 TFFEVSPLC  151 (189)
T ss_pred             EEEEecCCC
Confidence            665554443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.27  E-value=1.7e-06  Score=84.46  Aligned_cols=84  Identities=15%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCc-----cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRA-----FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~-----F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      +|.|||||||++|+|++...     +.+. +..+.|.....  ..+  +..+.|||||   |+.....-...+..+-.+.
T Consensus       160 vG~~nvGKStliN~l~~~~~~~~~~~~~s-~~pgtT~~~~~--~~~--~~~~~l~DtP---G~~~~~~~~~~l~~~~l~~  231 (360)
T TIGR03597       160 VGVTNVGKSSLINKLLKQNNGDKDVITTS-PFPGTTLDLIE--IPL--DDGHSLYDTP---GIINSHQMAHYLDKKDLKY  231 (360)
T ss_pred             ECCCCCCHHHHHHHHHhhccCCcceeeec-CCCCeEeeEEE--EEe--CCCCEEEECC---CCCChhHhhhhcCHHHHhh
Confidence            69999999999999998642     2221 12234444332  223  3457899999   9986531112222211111


Q ss_pred             HHhcCCCCeEEEEEEeCC
Q 044972           78 IGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~   95 (307)
                      + .-..+++.+.++++.+
T Consensus       232 ~-~~~~~i~~~~~~l~~~  248 (360)
T TIGR03597       232 I-TPKKEIKPKTYQLNPN  248 (360)
T ss_pred             c-CCCCccCceEEEeCCC
Confidence            1 1123567777777665

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.26  E-value=1.1e-06  Score=84.65  Aligned_cols=57  Identities=19%  Similarity=0.121  Sum_probs=41.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF   67 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~   67 (307)
                      +|-|||||||++|+|+|+....++.- .++|+.-+.-.    -+..+.++|||   |+.-++..+
T Consensus       138 vG~PNVGKSslIN~L~~k~~~~~s~~-PG~Tk~~q~i~----~~~~i~LlDtP---Gii~~~~~~  194 (322)
T COG1161         138 VGYPNVGKSTLINRLLGKKVAKTSNR-PGTTKGIQWIK----LDDGIYLLDTP---GIIPPKFDD  194 (322)
T ss_pred             EcCCCCcHHHHHHHHhcccceeeCCC-CceecceEEEE----cCCCeEEecCC---CcCCCCccc
Confidence            69999999999999999998655432 36666554433    23459999999   987655433

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.26  E-value=7.9e-06  Score=84.68  Aligned_cols=108  Identities=16%  Similarity=0.071  Sum_probs=66.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----CC------------eEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----DG------------QVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----~G------------r~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|.+|+||||++|.|.|.......  +...|.+--.....++     .|            ..++++|||   |..+.  
T Consensus        12 ~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTP---G~e~f--   84 (586)
T PRK04004         12 LGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTP---GHEAF--   84 (586)
T ss_pred             ECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECC---ChHHH--
Confidence            699999999999999987543221  1122221100000000     01            127999999   86331  


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                           .....    ....+.|++|||+++...+..+....+..+..     .-..++|++|+.|..
T Consensus        85 -----~~~~~----~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~  136 (586)
T PRK04004         85 -----TNLRK----RGGALADIAILVVDINEGFQPQTIEAINILKR-----RKTPFVVAANKIDRI  136 (586)
T ss_pred             -----HHHHH----HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence                 11111    23356899999999875677777777766543     234589999999975

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.25  E-value=7.3e-06  Score=81.08  Aligned_cols=70  Identities=14%  Similarity=0.280  Sum_probs=46.3

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      ++.+++||||   |-       ++....+..    ....+|++|||+++...+ ..+....+..+ ..+|   .+++||+
T Consensus        79 ~~~i~liDtP---Gh-------~~f~~~~~~----g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVv  140 (406)
T TIGR03680        79 LRRVSFVDAP---GH-------ETLMATMLS----GAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIV  140 (406)
T ss_pred             ccEEEEEECC---CH-------HHHHHHHHH----HHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEE
Confidence            5789999999   84       233333333    234689999999997444 44444545443 3343   3578999


Q ss_pred             EecCCCCCC
Q 044972          125 FTRGDELED  133 (307)
Q Consensus       125 fT~~D~L~~  133 (307)
                      +|+.|....
T Consensus       141 vNK~Dl~~~  149 (406)
T TIGR03680       141 QNKIDLVSK  149 (406)
T ss_pred             EEccccCCH
Confidence            999997754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.24  E-value=2.6e-06  Score=80.96  Aligned_cols=54  Identities=24%  Similarity=0.073  Sum_probs=35.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCC------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSS------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      .+|++||||||++|+|+|.....++.-+.      ..|+..+..  .+ ++ ...|||||   |+..
T Consensus       169 ~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~-~~-~~~~~Dtp---G~~~  228 (298)
T PRK00098        169 LAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DL-PG-GGLLIDTP---GFSS  228 (298)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--Ec-CC-CcEEEECC---CcCc
Confidence            47999999999999999987665432211      134333332  23 22 24899999   7764

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.24  E-value=3.3e-05  Score=69.58  Aligned_cols=142  Identities=11%  Similarity=0.074  Sum_probs=82.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEE--EEEEe----CCe--EEEEEeCCCCCCCCCCCcCHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQ--RTMLK----DGQ--VVNVIDTPAIARLFDSSADFEFVSKE   73 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~--~~~~~----~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~e   73 (307)
                      .+|.+||||||++|.+++.. |....   ..|-.|...  ...++    +|.  .+.+.||+   |--.           
T Consensus         5 lvGd~gVGKTSLi~~~~~~~-f~~~~---~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDta---G~e~-----------   66 (202)
T cd04102           5 VVGDSGVGKSSLVHLICKNQ-VLGRP---SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVG---GSES-----------   66 (202)
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCCC---CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecC---Cchh-----------
Confidence            36999999999999999875 54322   223333322  22231    133  57899999   7521           


Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh---------------------hccccCCeEEEEEecCCCCC
Q 044972           74 IVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL---------------------FGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        74 I~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~---------------------FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ..........+.|++|||+++.++-|-+..  -.|+..+                     |+. -.-.+|||-|+.|..+
T Consensus        67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l--~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~-~~~PiilVGnK~Dl~~  143 (202)
T cd04102          67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNL--QRWSLEALNKDTFPTGLLVTNGDYDSEQFGG-NQIPLLVIGTKLDQIP  143 (202)
T ss_pred             HHHHHHHHhCcCCEEEEEEECcChHHHHHH--HHHHHHHHHhhccccccccccccccccccCC-CCceEEEEEECccchh
Confidence            111223456799999999999855444432  2333332                     111 1347889999999754


Q ss_pred             CCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCC
Q 044972          133 DNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTK  169 (307)
Q Consensus       133 ~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~  169 (307)
                      ....+-+.-+.     .-..+.++||.-....|.+..
T Consensus       144 ~r~~~~~~~~~-----~~~~ia~~~~~~~i~~~c~~~  175 (202)
T cd04102         144 EKESSGNLVLT-----ARGFVAEQGNAEEINLNCTNG  175 (202)
T ss_pred             hcccchHHHhh-----HhhhHHHhcCCceEEEecCCc
Confidence            31011111111     134566778888777776543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=98.24  E-value=1.3e-05  Score=73.29  Aligned_cols=110  Identities=12%  Similarity=-0.022  Sum_probs=63.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.+++.. |.....+ .+..... ....+ +|.  .+.+.|||   |-..           ......+
T Consensus         7 vGd~~vGKTsLi~~~~~~~-f~~~y~p-Ti~~~~~-~~~~~-~~~~v~L~iwDt~---G~e~-----------~~~l~~~   68 (222)
T cd04173           7 VGDAECGKTALLQVFAKDA-YPGSYVP-TVFENYT-ASFEI-DKRRIELNMWDTS---GSSY-----------YDNVRPL   68 (222)
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCCccCC-ccccceE-EEEEE-CCEEEEEEEEeCC---CcHH-----------HHHHhHH
Confidence            6999999999999999865 6433221 1111221 23445 665  56779999   8421           1111234


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~  132 (307)
                      +.++.|+||||+++.++-|-+.  +...+...+-. ..--++|||.|+.|...
T Consensus        69 ~~~~~d~illvfdis~~~Sf~~--i~~~w~~~~~~~~~~~piiLVgnK~DL~~  119 (222)
T cd04173          69 AYPDSDAVLICFDISRPETLDS--VLKKWQGETQEFCPNAKVVLVGCKLDMRT  119 (222)
T ss_pred             hccCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence            6789999999999874322111  21211111111 11247889999998644

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>TIGR00503 prfC peptide chain release factor 3

Probab=98.23  E-value=9.7e-06  Score=83.05  Aligned_cols=109  Identities=14%  Similarity=0.072  Sum_probs=68.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC--------------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|.+|+||||+.+.||-...+....+.                    .+.|-........| +|..+++||||   |..|
T Consensus        17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP---G~~d   92 (527)
T TIGR00503        17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP---GHED   92 (527)
T ss_pred             EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC---Chhh
Confidence            699999999999999743222111000                    01222233345677 89999999999   9743


Q ss_pred             CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                             ...++.++    ....|++|+|+++...+.......++....     ....+||++++.|..
T Consensus        93 -------f~~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~  145 (527)
T TIGR00503        93 -------FSEDTYRT----LTAVDNCLMVIDAAKGVETRTRKLMEVTRL-----RDTPIFTFMNKLDRD  145 (527)
T ss_pred             -------HHHHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence                   22233333    346899999999875566555555543332     235789999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.23  E-value=9.6e-06  Score=72.80  Aligned_cols=107  Identities=15%  Similarity=-0.080  Sum_probs=65.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCce--eEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT--CEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~--c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      +|.+||||||+++.+++.. |....   ..|..  +......+ ++  ..+.|+|||   |-...           ....
T Consensus         1 vG~~~vGKTsLi~r~~~~~-f~~~~---~~Tig~~~~~~~~~~-~~~~~~l~iwDt~---G~e~~-----------~~l~   61 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGE-FEKKY---VATLGVEVHPLVFHT-NRGPIRFNVWDTA---GQEKF-----------GGLR   61 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCC-CCCCC---CCceeEEEEEEEEEE-CCEEEEEEEEECC---Cchhh-----------hhhh
Confidence            6999999999999999653 64332   22322  22233334 44  488999999   85321           1112


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      .....+.|++|||+++.++.|-+.. .-+..+.... +  --..|||.|+.|..
T Consensus        62 ~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~  112 (200)
T smart00176       62 DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-E--NIPIVLCGNKVDVK  112 (200)
T ss_pred             HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-C--CCCEEEEEECcccc
Confidence            2345689999999998754433322 2233344332 1  34788999999853

Ran is involved in the active transport of proteins through nuclear pores.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.22  E-value=2.8e-06  Score=80.38  Aligned_cols=54  Identities=22%  Similarity=0.060  Sum_probs=35.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      .+|++||||||++|+|+|...+.++.-+      ..+|+..+..  .+ .+ ...|||||   |+.+
T Consensus       166 ~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~--~~-~~-~~~liDtP---G~~~  225 (287)
T cd01854         166 LVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELF--PL-PG-GGLLIDTP---GFRE  225 (287)
T ss_pred             EECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEE--Ec-CC-CCEEEECC---CCCc
Confidence            4799999999999999998776554221      1234443332  23 21 23799999   8843

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04129 Rho2 Rho2 subfamily

Probab=98.22  E-value=9.7e-06  Score=70.85  Aligned_cols=109  Identities=16%  Similarity=0.018  Sum_probs=63.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++|+||||++|.|++.. |.....+ ++..... ....+ +|.  .+.++|||   |........           ..
T Consensus         7 vG~~g~GKStLl~~l~~~~-~~~~~~~-t~~~~~~-~~~~~-~~~~~~l~i~Dt~---g~~~~~~~~-----------~~   68 (187)
T cd04129           7 VGDGACGKTSLLSVFTLGE-FPEEYHP-TVFENYV-TDCRV-DGKPVQLALWDTA---GQEEYERLR-----------PL   68 (187)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCcccCC-cccceEE-EEEEE-CCEEEEEEEEECC---CChhccccc-----------hh
Confidence            6999999999999998543 4322211 1112222 23345 654  46788999   864321110           01


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|+|+.++++-+-++  ..-+..+....+   -..+|||.|+.|...
T Consensus        69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~  119 (187)
T cd04129          69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQ  119 (187)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhh
Confidence            2357899999999873322222  123344443322   367999999999543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04131 Rnd Rnd subfamily

Probab=98.21  E-value=1.2e-05  Score=70.32  Aligned_cols=108  Identities=11%  Similarity=-0.009  Sum_probs=64.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.+++.. |.....+ .+.... .....+ +|.  .+.+.|||   |--..        ..+   ...
T Consensus         7 vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~-~~~~~~-~~~~~~l~iwDt~---G~~~~--------~~~---~~~   68 (178)
T cd04131           7 VGDVQCGKTALLQVFAKDC-YPETYVP-TVFENY-TASFEI-DEQRIELSLWDTS---GSPYY--------DNV---RPL   68 (178)
T ss_pred             ECCCCCCHHHHHHHHHhCc-CCCCcCC-ceEEEE-EEEEEE-CCEEEEEEEEECC---Cchhh--------hhc---chh
Confidence            6999999999999999864 6433221 111111 123345 664  57799999   84211        011   123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ...+.|++|||+++.++-|=+.  ..-+..+.... +  -..+|||-|+.|..
T Consensus        69 ~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~--~~~iilVgnK~DL~  118 (178)
T cd04131          69 CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-P--NTKVLLVGCKTDLR  118 (178)
T ss_pred             hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-C--CCCEEEEEEChhhh
Confidence            4678999999999974433332  12233344432 2  24788899999853

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.20  E-value=1.7e-05  Score=81.26  Aligned_cols=110  Identities=13%  Similarity=0.079  Sum_probs=67.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC--------------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|.+|+||||+.+.||-.....+..+.                    .+.|-........| +|..+++||||   |..|
T Consensus        16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP---G~~d   91 (526)
T PRK00741         16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP---GHED   91 (526)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC---Cchh
Confidence            699999999999999832111100000                    01111222345677 89999999999   9754


Q ss_pred             CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      -       ..+..+++    ...|++|+|+++...........+.....     .-..+||+.++.|...
T Consensus        92 f-------~~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         92 F-------SEDTYRTL----TAVDSALMVIDAAKGVEPQTRKLMEVCRL-----RDTPIFTFINKLDRDG  145 (526)
T ss_pred             h-------HHHHHHHH----HHCCEEEEEEecCCCCCHHHHHHHHHHHh-----cCCCEEEEEECCcccc
Confidence            2       12333333    46899999999865565555555444332     2356889999998654

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.18  E-value=1.7e-05  Score=69.93  Aligned_cols=108  Identities=13%  Similarity=0.023  Sum_probs=66.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||+++.+++.. |.....+ .+.... .....+ +|.  .+.+.||+   |--.       . ..+   ..
T Consensus        10 vvGd~~vGKTsli~~~~~~~-f~~~~~p-T~~~~~-~~~~~~-~~~~~~l~iwDta---G~e~-------~-~~~---~~   71 (182)
T cd04172          10 VVGDSQCGKTALLHVFAKDC-FPENYVP-TVFENY-TASFEI-DTQRIELSLWDTS---GSPY-------Y-DNV---RP   71 (182)
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCCccCC-ceeeee-EEEEEE-CCEEEEEEEEECC---Cchh-------h-Hhh---hh
Confidence            37999999999999999864 6433221 111111 223445 664  57899999   8421       0 111   22


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                      +...+.|+||||+++.++-|-+.  ..-+..+.... +  ...+|||.|+.|.
T Consensus        72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL  121 (182)
T cd04172          72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDL  121 (182)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEeEChhh
Confidence            45679999999999875533333  22334444433 2  2478899999985

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04128 Spg1 Spg1p

Probab=98.18  E-value=2.6e-05  Score=68.36  Aligned_cols=110  Identities=11%  Similarity=0.030  Sum_probs=65.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.+++.. |.....+ ++..........+ +|.  .+.+.||+   |-...           ......
T Consensus         6 lG~~~vGKTsLi~~~~~~~-f~~~~~~-T~g~~~~~~~i~~-~~~~~~l~iwDt~---G~~~~-----------~~~~~~   68 (182)
T cd04128           6 LGDAQIGKTSLMVKYVEGE-FDEDYIQ-TLGVNFMEKTISI-RGTEITFSIWDLG---GQREF-----------INMLPL   68 (182)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCCCC-ccceEEEEEEEEE-CCEEEEEEEEeCC---CchhH-----------HHhhHH
Confidence            6999999999999999864 6432211 1111232334455 664  57899999   85321           112224


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|||+++.++-+-++. ..+..+... .+.  ...|+|.|+.|...
T Consensus        69 ~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~-~~~--~~pilVgnK~Dl~~  118 (182)
T cd04128          69 VCNDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKT--AIPILVGTKYDLFA  118 (182)
T ss_pred             HCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC--CCEEEEEEchhccc
Confidence            56789999999998754443332 222333322 222  23367899999753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.17  E-value=2.5e-05  Score=69.17  Aligned_cols=111  Identities=14%  Similarity=-0.013  Sum_probs=65.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC--CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD--GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~--Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|..||||||+.|.+++....... .+..++..  .+...++.  ...+.++|||   |..+           +......
T Consensus        11 ~G~~g~GKTtl~~~l~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~~~~Dt~---gq~~-----------~~~~~~~   73 (219)
T COG1100          11 LGDGGVGKTTLLNRLVGDEFPEGY-PPTIGNLD--PAKTIEPYRRNIKLQLWDTA---GQEE-----------YRSLRPE   73 (219)
T ss_pred             EcCCCccHHHHHHHHhcCcCcccC-CCceeeee--EEEEEEeCCCEEEEEeecCC---CHHH-----------HHHHHHH
Confidence            699999999999999998744322 21111111  11222213  2468889999   7532           2222334


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHH---HHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHS---LESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~---i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...|++++++|.... .+..-+..+-.+   +....+  ....+++|.++.|....
T Consensus        74 y~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~  126 (219)
T COG1100          74 YYRGANGILIVYDST-LRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDE  126 (219)
T ss_pred             HhcCCCEEEEEEecc-cchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccc
Confidence            568999999999876 223333222222   333322  24567888888887655

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.17  E-value=1.3e-05  Score=83.17  Aligned_cols=110  Identities=20%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCc------cccccC-------CCCCCceeEEEEEEEe--CC--eEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA------FKSKVG-------SSEDTKTCEMQRTMLK--DG--QVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~------F~s~~s-------~~svT~~c~~~~~~~~--~G--r~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|.+|+||||+.+.++....      |.....       ..+.|-........|.  +|  ..++++|||   |..|.  
T Consensus         9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTP---G~~dF--   83 (595)
T TIGR01393         9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTP---GHVDF--   83 (595)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECC---CcHHH--
Confidence            69999999999999997532      211110       0133333233333441  23  578999999   98652  


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                           ..++.++    ..+.|++|||+++....+.+....+.....     .....|++.|+.|..
T Consensus        84 -----~~~v~~~----l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~  135 (595)
T TIGR01393        84 -----SYEVSRS----LAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLP  135 (595)
T ss_pred             -----HHHHHHH----HHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence                 2233333    346789999999875666665544433322     123689999999964

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.17  E-value=1.1e-05  Score=77.60  Aligned_cols=85  Identities=13%  Similarity=-0.009  Sum_probs=50.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--------------------CC---eEEEEEeCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--------------------DG---QVVNVIDTPAIA   58 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--------------------~G---r~v~VIDTP~~~   58 (307)
                      .+|.|||||||++|.|.+... .+..- ...|.....+...++                    +|   .++.++|||   
T Consensus         3 ivG~pnvGKStLfn~lt~~~~-~~~~~-pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a---   77 (318)
T cd01899           3 LVGKPNAGKSTFFNAATLADV-EIANY-PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA---   77 (318)
T ss_pred             EECCCCCCHHHHHHHHhCCCC-cccCC-CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC---
Confidence            589999999999999999863 32211 113333333322210                    23   479999999   


Q ss_pred             CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      |+.........+...+.    ......|++++|+++.
T Consensus        78 Glv~ga~~~~glg~~fL----~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          78 GLVPGAHEGKGLGNKFL----DDLRDADALIHVVDAS  110 (318)
T ss_pred             CCCCCccchhhHHHHHH----HHHHHCCEEEEEEeCC
Confidence            99643211122222222    2234679999999985

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.16  E-value=1.9e-05  Score=78.98  Aligned_cols=116  Identities=13%  Similarity=0.063  Sum_probs=70.2

Q ss_pred             CCCCCCCcHHHHHHHHH------CCCccccccCCCC---------CCce--eEEEE--EEE--------------eCCeE
Q 044972            2 CACEYIKICTTTGNSIL------GRRAFKSKVGSSE---------DTKT--CEMQR--TML--------------KDGQV   48 (307)
Q Consensus         2 ~~~~tGsGKSStgNsIL------G~~~F~s~~s~~s---------vT~~--c~~~~--~~~--------------~~Gr~   48 (307)
                      .+|++|||||||...|.      |.++.........         .+..  .....  ...              ..+..
T Consensus       105 lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~D  184 (429)
T TIGR01425       105 FVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFD  184 (429)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCC
Confidence            47999999999999886      7665433221110         0000  00010  000              02679


Q ss_pred             EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 044972           49 VNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRG  128 (307)
Q Consensus        49 v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~  128 (307)
                      ++|||||   |-..   .+.....|+.+....  -.||.++||+++.  .-.+.....+.+.+     ....+-|+||+-
T Consensus       185 vViIDTa---Gr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~--~Gq~a~~~a~~F~~-----~~~~~g~IlTKl  249 (429)
T TIGR01425       185 IIIVDTS---GRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGS--IGQAAEAQAKAFKD-----SVDVGSVIITKL  249 (429)
T ss_pred             EEEEECC---CCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccc--cChhHHHHHHHHHh-----ccCCcEEEEECc
Confidence            9999999   9754   346677888776533  3689999999864  22333334444443     345788889998


Q ss_pred             CCCC
Q 044972          129 DELE  132 (307)
Q Consensus       129 D~L~  132 (307)
                      |.-.
T Consensus       250 D~~a  253 (429)
T TIGR01425       250 DGHA  253 (429)
T ss_pred             cCCC
Confidence            8643

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.13  E-value=1.3e-05  Score=79.45  Aligned_cols=85  Identities=13%  Similarity=-0.012  Sum_probs=52.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEE--------------------eCC---eEEEEEeCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTML--------------------KDG---QVVNVIDTPAIA   58 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~--------------------~~G---r~v~VIDTP~~~   58 (307)
                      .+|.|||||||++|.|.+.++-.+..  ...|..+..+...+                    ++|   -++.++|||   
T Consensus         6 ivG~pnvGKSTlfn~Lt~~~~~~~~y--~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a---   80 (396)
T PRK09602          6 LVGKPNVGKSTFFNAATLADVEIANY--PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA---   80 (396)
T ss_pred             EECCCCCCHHHHHHHHhCCcccccCC--CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC---
Confidence            47999999999999999986422221  22344444443221                    133   468899999   


Q ss_pred             CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      ||.........+......    .....|++|+|+++.
T Consensus        81 Gl~~ga~~g~glg~~fL~----~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         81 GLVPGAHEGRGLGNQFLD----DLRQADALIHVVDAS  113 (396)
T ss_pred             CcCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence            997532222223222222    234689999999985

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.13  E-value=6.5e-05  Score=67.06  Aligned_cols=110  Identities=14%  Similarity=-0.050  Sum_probs=57.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|++||||||++|.++... |.....+ ++............ .+..+.++|||   |-.+.        ..+.   ...
T Consensus        15 iG~~g~GKTtLi~~~~~~~-~~~~~~~-t~~~~~~~~~~~~~~~~i~i~~~Dt~---g~~~~--------~~~~---~~~   78 (215)
T PTZ00132         15 VGDGGVGKTTFVKRHLTGE-FEKKYIP-TLGVEVHPLKFYTNCGPICFNVWDTA---GQEKF--------GGLR---DGY   78 (215)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCCCC-ccceEEEEEEEEECCeEEEEEEEECC---Cchhh--------hhhh---HHH
Confidence            6999999999998655433 4322211 11111212222220 22578899999   84321        1111   112


Q ss_pred             CCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ..+.+++++|+++.++.|-.. ...+..+.... +  ...++++.|+.|..
T Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~--~~~i~lv~nK~Dl~  126 (215)
T PTZ00132         79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-E--NIPIVLVGNKVDVK  126 (215)
T ss_pred             hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccCc
Confidence            346799999999864443322 12233333332 1  23566778888753

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.12  E-value=3e-05  Score=77.02  Aligned_cols=69  Identities=13%  Similarity=0.252  Sum_probs=45.4

Q ss_pred             eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972           47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLf  125 (307)
                      +.++++|||   |-       +.....    +......+|++|||+++...+ ..+....+..+.. .|   ..+.+||+
T Consensus        85 ~~i~liDtP---G~-------~~f~~~----~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVl  146 (411)
T PRK04000         85 RRVSFVDAP---GH-------ETLMAT----MLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQ  146 (411)
T ss_pred             cEEEEEECC---CH-------HHHHHH----HHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEE
Confidence            689999999   83       222222    223345789999999987444 5555555554432 22   34689999


Q ss_pred             ecCCCCCC
Q 044972          126 TRGDELED  133 (307)
Q Consensus       126 T~~D~L~~  133 (307)
                      |+.|..+.
T Consensus       147 NK~Dl~~~  154 (411)
T PRK04000        147 NKIDLVSK  154 (411)
T ss_pred             Eeeccccc
Confidence            99998754

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.12  E-value=5.2e-06  Score=79.20  Aligned_cols=63  Identities=19%  Similarity=0.015  Sum_probs=38.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc----C--CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC---cCHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV----G--SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS---ADFEFVSK   72 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~----s--~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~---~~~~~i~~   72 (307)
                      +|.+||||||++|+|++.....++.    .  ..-.|+........- +|   .|||||   ||...+   ...+++..
T Consensus       170 ~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-gG---~iiDTP---Gf~~~~l~~~~~e~l~~  241 (301)
T COG1162         170 LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-GG---WIIDTP---GFRSLGLAHLEPEDLVQ  241 (301)
T ss_pred             ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-CC---EEEeCC---CCCccCcccCCHHHHHH
Confidence            6999999999999999965443222    1  122344333333222 34   689999   885433   34555544

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.11  E-value=2e-05  Score=68.73  Aligned_cols=137  Identities=12%  Similarity=0.049  Sum_probs=84.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      ..|.+||||||++|.|.+.+....     ..|.........+ ++..+.+.|.+   |=..           +.......
T Consensus        19 ilGl~~sGKTtll~~l~~~~~~~~-----~pT~g~~~~~i~~-~~~~~~~~d~g---G~~~-----------~~~~w~~y   78 (175)
T PF00025_consen   19 ILGLDGSGKTTLLNRLKNGEISET-----IPTIGFNIEEIKY-KGYSLTIWDLG---GQES-----------FRPLWKSY   78 (175)
T ss_dssp             EEESTTSSHHHHHHHHHSSSEEEE-----EEESSEEEEEEEE-TTEEEEEEEES---SSGG-----------GGGGGGGG
T ss_pred             EECCCccchHHHHHHhhhcccccc-----Ccccccccceeee-CcEEEEEEecc---cccc-----------ccccceee
Confidence            369999999999999997654332     2344555666777 99999999999   7321           01112234


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCCCCC-cccHHHhcCCCCCchHHHHHHhcC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDELEDN-DETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L~~~-~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      .+++|+++||++.. ... .-..+...+..++....  -.+++|++++-|..... ...+.+++.-      ..|-  .+
T Consensus        79 ~~~~~~iIfVvDss-d~~-~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~l~--~~  148 (175)
T PF00025_consen   79 FQNADGIIFVVDSS-DPE-RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EKLK--NK  148 (175)
T ss_dssp             HTTESEEEEEEETT-GGG-GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GGTT--SS
T ss_pred             ccccceeEEEEecc-cce-eecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hhcc--cC
Confidence            56899999999876 211 22334556666666543  35788888988865431 1234445431      1211  34


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      .++.++.-.+
T Consensus       149 ~~~~v~~~sa  158 (175)
T PF00025_consen  149 RPWSVFSCSA  158 (175)
T ss_dssp             SCEEEEEEBT
T ss_pred             CceEEEeeec
Confidence            5666665444

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.09  E-value=3.7e-05  Score=70.85  Aligned_cols=107  Identities=8%  Similarity=-0.015  Sum_probs=63.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.+++.. |.....+ .+..... ....+ +|.  .+.|.|||   |--.       . ..+.   ..
T Consensus        19 vGd~~VGKTsLi~r~~~~~-F~~~y~p-Ti~~~~~-~~i~~-~~~~v~l~iwDTa---G~e~-------~-~~~~---~~   80 (232)
T cd04174          19 VGDVQCGKTAMLQVLAKDC-YPETYVP-TVFENYT-AGLET-EEQRVELSLWDTS---GSPY-------Y-DNVR---PL   80 (232)
T ss_pred             ECCCCCcHHHHHHHHhcCC-CCCCcCC-ceeeeeE-EEEEE-CCEEEEEEEEeCC---Cchh-------h-HHHH---HH
Confidence            6999999999999999764 6543221 1111222 22345 554  67889999   8421       0 1111   23


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                      ...+.|+||||+++.++-|-+.  ..-+..+.... +  -..+|||.|+.|.
T Consensus        81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL  129 (232)
T cd04174          81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-P--STRILLIGCKTDL  129 (232)
T ss_pred             HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccc
Confidence            4679999999999974433222  12233344332 2  2368899999984

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.07  E-value=1.7e-05  Score=68.25  Aligned_cols=117  Identities=18%  Similarity=0.125  Sum_probs=70.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++|+|||||.+.|.|.+.--      .-|...     .+ .+   .+||||   |=|=-   ..    -+.+.+..++
T Consensus         7 iG~~g~GKTTL~q~L~~~~~~~------~KTq~i-----~~-~~---~~IDTP---GEyiE---~~----~~y~aLi~ta   61 (143)
T PF10662_consen    7 IGPSGSGKTTLAQALNGEEIRY------KKTQAI-----EY-YD---NTIDTP---GEYIE---NP----RFYHALIVTA   61 (143)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCc------Ccccee-----Ee-cc---cEEECC---hhhee---CH----HHHHHHHHHH
Confidence            6999999999999999976421      123322     23 22   459999   86521   11    1233344455


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV  162 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~  162 (307)
                      -..++|+||.++..+++-        +---|..-+-+++|=|+|+.|...++ ..++         ..++.++.+|-+..
T Consensus        62 ~dad~V~ll~dat~~~~~--------~pP~fa~~f~~pvIGVITK~Dl~~~~-~~i~---------~a~~~L~~aG~~~i  123 (143)
T PF10662_consen   62 QDADVVLLLQDATEPRSV--------FPPGFASMFNKPVIGVITKIDLPSDD-ANIE---------RAKKWLKNAGVKEI  123 (143)
T ss_pred             hhCCEEEEEecCCCCCcc--------CCchhhcccCCCEEEEEECccCccch-hhHH---------HHHHHHHHcCCCCe
Confidence            578999999998633211        11122233457899999999977331 2222         24566777776654

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01875 RhoG RhoG subfamily

Probab=98.06  E-value=4.1e-05  Score=67.40  Aligned_cols=107  Identities=16%  Similarity=0.003  Sum_probs=62.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCce-eEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT-CEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~-c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||+++.++... |.....   .|-. .-.....+ +|.  .+.+.|||   |-..-        +.+.   .
T Consensus         9 vG~~~vGKTsli~~~~~~~-f~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~e~~--------~~l~---~   69 (191)
T cd01875           9 VGDGAVGKTCLLICYTTNA-FPKEYI---PTVFDNYSAQTAV-DGRTVSLNLWDTA---GQEEY--------DRLR---T   69 (191)
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCcCCC---CceEeeeEEEEEE-CCEEEEEEEEECC---Cchhh--------hhhh---h
Confidence            6999999999999998754 643221   1211 11122345 664  57789999   85211        1121   2


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHH--HHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGA--AIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~--~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ....+.|+||||+++.++-|=+...  -+..+... .+  --.+|||-|+.|.-
T Consensus        70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~-~~--~~piilvgNK~DL~  120 (191)
T cd01875          70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH-CP--NVPILLVGTKKDLR  120 (191)
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEEeChhhh
Confidence            3457899999999987433322211  12222221 12  34788889988853

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.04  E-value=1e-05  Score=85.64  Aligned_cols=110  Identities=14%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCc--------------cccccCCCCCCceeE----EEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRA--------------FKSKVGSSEDTKTCE----MQRTMLKDGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~--------------F~s~~s~~svT~~c~----~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      +|..|+|||||.+.++....              |.......+.|-...    .....| ++.++++||||   |..|..
T Consensus        25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTP---G~~~f~  100 (720)
T TIGR00490        25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTP---GHVDFG  100 (720)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCC---CccccH
Confidence            69999999999999984311              110000011222211    112456 78899999999   987622


Q ss_pred             cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                             .++..    +....|++|||+++...++.+....+..+..     .....||++|+.|...
T Consensus       101 -------~~~~~----al~~aD~~llVvda~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~  152 (720)
T TIGR00490       101 -------GDVTR----AMRAVDGAIVVVCAVEGVMPQTETVLRQALK-----ENVKPVLFINKVDRLI  152 (720)
T ss_pred             -------HHHHH----HHHhcCEEEEEEecCCCCCccHHHHHHHHHH-----cCCCEEEEEEChhccc
Confidence                   12222    2356799999999865566666655554432     1235679999999764

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01859 MJ1464 MJ1464

Probab=98.02  E-value=8.7e-06  Score=69.13  Aligned_cols=51  Identities=16%  Similarity=0.114  Sum_probs=35.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARL   60 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl   60 (307)
                      .+|.+|+||||++|.++|.....+... .+.|...+..  ..  +..+.|+|||   |+
T Consensus       106 ~ig~~~~Gkssl~~~l~~~~~~~~~~~-~~~t~~~~~~--~~--~~~~~~~Dtp---Gi  156 (156)
T cd01859         106 VVGYPNVGKSSIINALKGRHSASTSPS-PGYTKGEQLV--KI--TSKIYLLDTP---GV  156 (156)
T ss_pred             EECCCCCCHHHHHHHHhCCCccccCCC-CCeeeeeEEE--Ec--CCCEEEEECc---CC
Confidence            379999999999999998776554332 2345444322  22  3479999999   86

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.00  E-value=3.9e-05  Score=79.75  Aligned_cols=111  Identities=17%  Similarity=0.126  Sum_probs=67.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC-cccccc------------CCCCCCceeEEEEEEEe--C--CeEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKV------------GSSEDTKTCEMQRTMLK--D--GQVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~------------s~~svT~~c~~~~~~~~--~--Gr~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|..++||||+.+.||... .+....            ...+.|-........|.  +  +..+++||||   |..|.  
T Consensus        13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP---Gh~dF--   87 (600)
T PRK05433         13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP---GHVDF--   87 (600)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC---CcHHH--
Confidence            6999999999999998642 111000            01133333333334441  2  4689999999   98652  


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                           ..++.+++    .+.|++|||+++....+.+....+.....     .-...|+++|+.|...
T Consensus        88 -----~~~v~~sl----~~aD~aILVVDas~gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~~  140 (600)
T PRK05433         88 -----SYEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALE-----NDLEIIPVLNKIDLPA  140 (600)
T ss_pred             -----HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCc
Confidence                 23333333    35789999999875666655544443322     1235899999999653

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.00  E-value=9.6e-06  Score=81.75  Aligned_cols=119  Identities=18%  Similarity=0.096  Sum_probs=74.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCce-eEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT-CEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~-c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|-|||||||+.|-+.-.++-.   .+.+-|+. --.+.... .=...-|||||   |+.|.-..+.-+. |+. .+.--
T Consensus       174 cG~PNVGKSSf~~~vtradvev---qpYaFTTksL~vGH~dy-kYlrwQViDTP---GILD~plEdrN~I-Emq-sITAL  244 (620)
T KOG1490|consen  174 CGYPNVGKSSFNNKVTRADDEV---QPYAFTTKLLLVGHLDY-KYLRWQVIDTP---GILDRPEEDRNII-EMQ-IITAL  244 (620)
T ss_pred             ecCCCCCcHhhccccccccccc---CCcccccchhhhhhhhh-heeeeeecCCc---cccCcchhhhhHH-HHH-HHHHH
Confidence            6889999999888776554321   22233332 22233222 33577899999   9998543222121 111 12222


Q ss_pred             CCCCeEEEEEEeCCC--CCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRN--RFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~--RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +.=.-||||+++++.  .+|-++ ...+..|+.+|   +.+.+|||+++.|-+..
T Consensus       245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF---aNK~~IlvlNK~D~m~~  296 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF---ANKVTILVLNKIDAMRP  296 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh---cCCceEEEeecccccCc
Confidence            223568999999862  566554 55788899998   45568999999998765

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.99  E-value=1.3e-05  Score=67.38  Aligned_cols=136  Identities=16%  Similarity=0.095  Sum_probs=78.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      +|++||||||+++.+.+.. |.....   .|..+  ....... ++.  .+.++|||   |-..    -..+    .   
T Consensus         5 vG~~~vGKtsl~~~~~~~~-~~~~~~---~t~~~~~~~~~~~~-~~~~~~l~i~D~~---g~~~----~~~~----~---   65 (162)
T PF00071_consen    5 VGDSGVGKTSLINRLINGE-FPENYI---PTIGIDSYSKEVSI-DGKPVNLEIWDTS---GQER----FDSL----R---   65 (162)
T ss_dssp             EESTTSSHHHHHHHHHHSS-TTSSSE---TTSSEEEEEEEEEE-TTEEEEEEEEEET---TSGG----GHHH----H---
T ss_pred             ECCCCCCHHHHHHHHHhhc-cccccc---cccccccccccccc-ccccccccccccc---cccc----cccc----c---
Confidence            6999999999999999765 543221   12212  2223334 565  58899999   8421    1111    1   


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      .....+.|+|++|+++.++-+=+. ...+..+....+  ..-.++|+-|+.|..+..  .    +   .....+.+.+..
T Consensus        66 ~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~--~----v---~~~~~~~~~~~~  134 (162)
T PF00071_consen   66 DIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDER--E----V---SVEEAQEFAKEL  134 (162)
T ss_dssp             HHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGS--S----S---CHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccc--c----c---hhhHHHHHHHHh
Confidence            122457899999999873211111 123333343433  134788888998855421  1    1   123457777777


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +-.|+-.+-++
T Consensus       135 ~~~~~e~Sa~~  145 (162)
T PF00071_consen  135 GVPYFEVSAKN  145 (162)
T ss_dssp             TSEEEEEBTTT
T ss_pred             CCEEEEEECCC
Confidence            77776666443

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK13768 GTPase; Provisional

Probab=97.98  E-value=5.6e-05  Score=70.30  Aligned_cols=81  Identities=14%  Similarity=0.082  Sum_probs=49.2

Q ss_pred             eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ..++|||||   |..+...- ......+.+.+.-.  .++++++|+++....+..+.....++....=.....++|+|+|
T Consensus        97 ~~~~~~d~~---g~~~~~~~-~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~n  170 (253)
T PRK13768         97 ADYVLVDTP---GQMELFAF-RESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLN  170 (253)
T ss_pred             CCEEEEeCC---cHHHHHhh-hHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence            479999999   87543211 22223333333222  2899999999864455666554444331111124578999999


Q ss_pred             cCCCCCC
Q 044972          127 RGDELED  133 (307)
Q Consensus       127 ~~D~L~~  133 (307)
                      +.|.+..
T Consensus       171 K~D~~~~  177 (253)
T PRK13768        171 KADLLSE  177 (253)
T ss_pred             hHhhcCc
Confidence            9999876

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.94  E-value=0.00013  Score=72.87  Aligned_cols=122  Identities=11%  Similarity=0.029  Sum_probs=74.7

Q ss_pred             CCCCCCCcHHHHHHHHHCC----Ccc-----------ccccCCCC---CCceeEE---EEEEEeCC----eEEEEEeCCC
Q 044972            2 CACEYIKICTTTGNSILGR----RAF-----------KSKVGSSE---DTKTCEM---QRTMLKDG----QVVNVIDTPA   56 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~----~~F-----------~s~~s~~s---vT~~c~~---~~~~~~~G----r~v~VIDTP~   56 (307)
                      -+|+.++||||++|.+.|.    +..           .. .|..+   .|++...   ...++.-+    -+|.+|||+ 
T Consensus        22 vvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELp-qs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcv-   99 (492)
T TIGR02836        22 VVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELP-QSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCV-   99 (492)
T ss_pred             EEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccC-cCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECC-
Confidence            3799999999999999999    433           11 12223   3444433   22333222    589999999 


Q ss_pred             CCCCCCCCcC-HHHHHH-------------------HHHHHHHhcCCCCeEEEEEE-eCC------CCCCHHHHHHHHHH
Q 044972           57 IARLFDSSAD-FEFVSK-------------------EIVKCIGMAKDGIHAVLIVF-SVR------NRFSEEEGAAIHSL  109 (307)
Q Consensus        57 ~~Gl~Dt~~~-~~~i~~-------------------eI~kcv~ls~pGpha~LLVl-~~~------~RfT~ee~~~l~~i  109 (307)
                        |+.|.+.. ..+..+                   ||--- ..-....++-|+|+ +..      ..+.+.|.+++..|
T Consensus       100 --G~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~-kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836       100 --GYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTR-KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             --CcccCCCccceeccccccccCCcccccCchhhhhhhhHH-HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence              99876431 111111                   11100 00012456777777 331      25788899999999


Q ss_pred             HHhhccccCCeEEEEEecCCCCCC
Q 044972          110 ESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus       110 ~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ++     .-+..|||++..|-+.+
T Consensus       177 k~-----~~kPfiivlN~~dp~~~  195 (492)
T TIGR02836       177 KE-----LNKPFIILLNSTHPYHP  195 (492)
T ss_pred             Hh-----cCCCEEEEEECcCCCCc
Confidence            97     47889999999986543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.94  E-value=5.1e-05  Score=81.77  Aligned_cols=110  Identities=12%  Similarity=0.085  Sum_probs=70.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC--------------CCCCceeEEEEEEEe---------------CCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------SEDTKTCEMQRTMLK---------------DGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------~svT~~c~~~~~~~~---------------~Gr~v~VID   53 (307)
                      +|..++|||||.+.||......+....              .+.|-.+...+..|.               ++..|++||
T Consensus        25 iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD  104 (843)
T PLN00116         25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLID  104 (843)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEEC
Confidence            699999999999999965433221110              011112212223331               267899999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ||   |..|       ...++..++    ...|+.|+|+++...+....+.+++.+..     .-..+||++|++|.+
T Consensus       105 tP---Gh~d-------F~~e~~~al----~~~D~ailVvda~~Gv~~~t~~~~~~~~~-----~~~p~i~~iNK~D~~  163 (843)
T PLN00116        105 SP---GHVD-------FSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CC---CHHH-------HHHHHHHHH----hhcCEEEEEEECCCCCcccHHHHHHHHHH-----CCCCEEEEEECCccc
Confidence            99   8643       334444433    46789999999866677666666666554     245789999999987

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.91  E-value=7.6e-06  Score=82.55  Aligned_cols=53  Identities=19%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             CCCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 044972            1 SCACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLF   61 (307)
Q Consensus         1 ~~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~   61 (307)
                      .|||=||||||||+|+|.|.+...+. +..+-|+.-|....    .-.|.+.|.|   ||-
T Consensus       318 G~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~l----s~~v~LCDCP---GLV  370 (562)
T KOG1424|consen  318 GFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFL----SPSVCLCDCP---GLV  370 (562)
T ss_pred             EeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEc----CCCceecCCC---Ccc
Confidence            49999999999999999998865432 23456776665432    3478999999   984

>PRK13796 GTPase YqeH; Provisional

Probab=97.91  E-value=1e-05  Score=79.14  Aligned_cols=53  Identities=17%  Similarity=-0.017  Sum_probs=33.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC-----ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRR-----AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDS   63 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-----~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt   63 (307)
                      +|.|||||||++|+|++..     ...++ ...++|...+.  ..+ ++ ...+||||   |+...
T Consensus       166 vG~~NvGKSTLiN~L~~~~~~~~~~~~~s-~~pGTT~~~~~--~~l-~~-~~~l~DTP---Gi~~~  223 (365)
T PRK13796        166 VGVTNVGKSTLINRIIKEITGEKDVITTS-RFPGTTLDKIE--IPL-DD-GSFLYDTP---GIIHR  223 (365)
T ss_pred             EcCCCCcHHHHHHHHHhhccCccceEEec-CCCCccceeEE--EEc-CC-CcEEEECC---Ccccc
Confidence            7999999999999999653     11111 12344544332  223 22 35899999   99643

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.91  E-value=3.9e-05  Score=72.27  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=48.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc----CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA----KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls----~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~  120 (307)
                      .|..++|||||   |....   +.....|+.+.....    ...||-++||+++.  ...++......+.+.     ...
T Consensus       153 ~~~D~ViIDT~---G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~--~~~~~~~~~~~f~~~-----~~~  219 (272)
T TIGR00064       153 RNIDVVLIDTA---GRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT--TGQNALEQAKVFNEA-----VGL  219 (272)
T ss_pred             CCCCEEEEeCC---CCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECC--CCHHHHHHHHHHHhh-----CCC
Confidence            56799999999   87653   455666666544332    35799999999985  233433333333333     245


Q ss_pred             EEEEEecCCCCC
Q 044972          121 MIVVFTRGDELE  132 (307)
Q Consensus       121 ~IVLfT~~D~L~  132 (307)
                      .-|+||+-|.-.
T Consensus       220 ~g~IlTKlDe~~  231 (272)
T TIGR00064       220 TGIILTKLDGTA  231 (272)
T ss_pred             CEEEEEccCCCC
Confidence            788899988744

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=2.2e-05  Score=78.39  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=47.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKD-GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIV  123 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~p-Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IV  123 (307)
                      ++..++|||||   |+...+   .....++.+.+....+ -|+-.+||+++.  ....+   +..+...|  ......=+
T Consensus       298 ~~~D~VLIDTa---Gr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt--~~~~~---~~~~~~~f--~~~~~~gl  364 (432)
T PRK12724        298 DGSELILIDTA---GYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSST--SSYHH---TLTVLKAY--ESLNYRRI  364 (432)
T ss_pred             CCCCEEEEeCC---CCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCC--CCHHH---HHHHHHHh--cCCCCCEE
Confidence            46789999999   986433   3445556555544333 477888999875  22222   33444455  34566778


Q ss_pred             EEecCCCCC
Q 044972          124 VFTRGDELE  132 (307)
Q Consensus       124 LfT~~D~L~  132 (307)
                      +||+-|.-.
T Consensus       365 IlTKLDEt~  373 (432)
T PRK12724        365 LLTKLDEAD  373 (432)
T ss_pred             EEEcccCCC
Confidence            899988643

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.85  E-value=0.00018  Score=61.51  Aligned_cols=102  Identities=19%  Similarity=0.117  Sum_probs=61.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.+++.. |....++  ..... .....+ +|.  .+.+.||+   |..+.                .
T Consensus         6 vG~~gvGKTsli~~~~~~~-f~~~~~~--~~~~~-~~~i~~-~~~~~~l~i~D~~---g~~~~----------------~   61 (158)
T cd04103           6 VGNLQSGKSALVHRYLTGS-YVQLESP--EGGRF-KKEVLV-DGQSHLLLIRDEG---GAPDA----------------Q   61 (158)
T ss_pred             ECCCCCcHHHHHHHHHhCC-CCCCCCC--Cccce-EEEEEE-CCEEEEEEEEECC---CCCch----------------h
Confidence            6999999999999888653 5432221  11112 234566 784  47889999   87420                1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGD  129 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D  129 (307)
                      ...+.|+|+||+++.++-|=+. ...+..+....+. ..-+++||-|+.|
T Consensus        62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~D  110 (158)
T cd04103          62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDA  110 (158)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHH
Confidence            1246899999999875443333 2333444433221 2236788888744

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.83  E-value=5.9e-05  Score=80.06  Aligned_cols=110  Identities=13%  Similarity=0.144  Sum_probs=68.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC--------------CCCCceeEEEEEE--Ee-CCeEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS--------------SEDTKTCEMQRTM--LK-DGQVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~--------------~svT~~c~~~~~~--~~-~Gr~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|..++|||||.+.||......+....              .+.|-.+...+..  +. ++..|++||||   |..|-  
T Consensus        26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP---G~~df--  100 (731)
T PRK07560         26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP---GHVDF--  100 (731)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC---CccCh--
Confidence            689999999999999864322211100              0111111111112  21 36789999999   98762  


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                           ..++..++    ...|++|+|+++...+..+....+...... |    ...||++|+.|..
T Consensus       101 -----~~~~~~~l----~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~  152 (731)
T PRK07560        101 -----GGDVTRAM----RAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRL  152 (731)
T ss_pred             -----HHHHHHHH----HhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence                 23444433    456999999998756777777776664432 2    2468889999975

>cd04133 Rop_like Rop subfamily

Probab=97.81  E-value=0.00021  Score=62.74  Aligned_cols=109  Identities=16%  Similarity=0.070  Sum_probs=65.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.++... |.....+ .+.... .....+ +|.  .+.+.|||   |-.....        +   ...
T Consensus         7 ~G~~~vGKTsli~~~~~~~-f~~~~~~-Ti~~~~-~~~~~~-~~~~v~l~i~Dt~---G~~~~~~--------~---~~~   68 (176)
T cd04133           7 VGDGAVGKTCMLICYTSNK-FPTDYIP-TVFDNF-SANVSV-DGNTVNLGLWDTA---GQEDYNR--------L---RPL   68 (176)
T ss_pred             ECCCCCcHHHHHHHHhcCC-CCCCCCC-cceeee-EEEEEE-CCEEEEEEEEECC---CCccccc--------c---chh
Confidence            6999999999999999754 7543222 111112 223345 664  67899999   8532211        1   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|||.++.++-|=+..  .-+..+... .+  --.+|||-|+.|..+
T Consensus        69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~-~~--~~piilvgnK~Dl~~  119 (176)
T cd04133          69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHY-AP--NVPIVLVGTKLDLRD  119 (176)
T ss_pred             hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhcc
Confidence            34688999999999755443331  223333332 22  246788888888643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.81  E-value=0.0002  Score=72.01  Aligned_cols=134  Identities=13%  Similarity=0.063  Sum_probs=76.8

Q ss_pred             CCCCCCcHHHHHHHHHCCC---------------------ccc----cc----cCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRR---------------------AFK----SK----VGSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~---------------------~F~----s~----~s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|..++|||||.-.||-.-                     .|.    ..    ....+.|-........+ +++.+++||
T Consensus        13 ~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liD   91 (447)
T PLN00043         13 IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TKYYCTVID   91 (447)
T ss_pred             EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CCEEEEEEE
Confidence            6999999999998886211                     010    00    01134555555555677 899999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-CC------HHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-FS------EEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-fT------~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |-       .+...++.    .....+|+.|||+++... |.      .+-+..+..+. .+   -..+.||++|
T Consensus        92 tP---Gh-------~df~~~~~----~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~---gi~~iIV~vN  153 (447)
T PLN00043         92 AP---GH-------RDFIKNMI----TGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TL---GVKQMICCCN  153 (447)
T ss_pred             CC---CH-------HHHHHHHH----hhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-Hc---CCCcEEEEEE
Confidence            99   84       33333333    334589999999998631 32      22222222222 22   2467899999


Q ss_pred             cCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972          127 RGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      +-|....+ -+-+.|-.  .-..++.+++..|
T Consensus       154 KmD~~~~~-~~~~~~~~--i~~ei~~~l~~~g  182 (447)
T PLN00043        154 KMDATTPK-YSKARYDE--IVKEVSSYLKKVG  182 (447)
T ss_pred             cccCCchh-hhHHHHHH--HHHHHHHHHHHcC
Confidence            99955210 11122211  1235777777665

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.75  E-value=5.2e-05  Score=73.08  Aligned_cols=100  Identities=11%  Similarity=0.025  Sum_probs=63.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|.|+|||||++|.|.|.+.-.   ...+ .|.++..+-... +|-+|-++|+|   |+.....+..--.+++.    ..
T Consensus        69 VGfPsvGKStLL~~LTnt~sev---a~y~FTTl~~VPG~l~Y-~ga~IQild~P---gii~gas~g~grG~~vl----sv  137 (365)
T COG1163          69 VGFPSVGKSTLLNKLTNTKSEV---ADYPFTTLEPVPGMLEY-KGAQIQLLDLP---GIIEGASSGRGRGRQVL----SV  137 (365)
T ss_pred             EcCCCccHHHHHHHHhCCCccc---cccCceecccccceEee-cCceEEEEcCc---ccccCcccCCCCcceee----ee
Confidence            7999999999999999976321   1222 355677777778 99999999999   88653322211112221    23


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK  115 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~  115 (307)
                      ....|+|++|+++....  .....+..-..-.|=
T Consensus       138 ~R~ADlIiiVld~~~~~--~~~~~i~~ELe~~GI  169 (365)
T COG1163         138 ARNADLIIIVLDVFEDP--HHRDIIERELEDVGI  169 (365)
T ss_pred             eccCCEEEEEEecCCCh--hHHHHHHHHHHhcCe
Confidence            34689999999875221  114444444444443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.75  E-value=0.00026  Score=68.26  Aligned_cols=74  Identities=19%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc----CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA----KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls----~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~  120 (307)
                      .+..++|||||   |....+   .....|+.+....+    +..||-.+||+++...  ...   +......+  +....
T Consensus       195 ~~~D~ViIDTa---Gr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~---~~~a~~f~--~~~~~  261 (318)
T PRK10416        195 RGIDVLIIDTA---GRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNA---LSQAKAFH--EAVGL  261 (318)
T ss_pred             CCCCEEEEeCC---CCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHH---HHHHHHHH--hhCCC
Confidence            55689999999   876533   34445555544322    3468999999998622  222   22222221  12467


Q ss_pred             EEEEEecCCCC
Q 044972          121 MIVVFTRGDEL  131 (307)
Q Consensus       121 ~IVLfT~~D~L  131 (307)
                      .-|++|+.|.-
T Consensus       262 ~giIlTKlD~t  272 (318)
T PRK10416        262 TGIILTKLDGT  272 (318)
T ss_pred             CEEEEECCCCC
Confidence            78899999854

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.74  E-value=0.00025  Score=68.35  Aligned_cols=116  Identities=15%  Similarity=0.047  Sum_probs=72.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCC-CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH----HHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSED-TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE----FVSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~sv-T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~----~i~~eI~kc   77 (307)
                      +|=||+||||++|.|...+.-   ....+- |-..+.++....+..+++|-|-|   |+-.-...+.    ...+-|-+|
T Consensus       202 VG~PNAGKSTLL~als~AKpk---Va~YaFTTL~P~iG~v~yddf~q~tVADiP---GiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  202 VGFPNAGKSTLLNALSRAKPK---VAHYAFTTLRPHIGTVNYDDFSQITVADIP---GIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ecCCCCcHHHHHHHhhccCCc---ccccceeeeccccceeeccccceeEeccCc---cccccccccCcccHHHHHHHHhh
Confidence            789999999999999875532   122232 33445555555344569999999   9864322222    233444443


Q ss_pred             HHhcCCCCeEEEEEEeCCCCC---CHHH-HHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972           78 IGMAKDGIHAVLIVFSVRNRF---SEEE-GAAIHSLESLFGKK-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~Rf---T~ee-~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~  133 (307)
                              ..++||+++. .+   +.-+ .+.|..=.+++.+. +.+..+||.++.|..+.
T Consensus       276 --------~~l~fVvD~s-~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea  327 (366)
T KOG1489|consen  276 --------KGLLFVVDLS-GKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA  327 (366)
T ss_pred             --------ceEEEEEECC-CcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence                    5788999987 44   4433 23333334566665 45568999999987644

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.70  E-value=1.5e-05  Score=71.61  Aligned_cols=74  Identities=22%  Similarity=0.195  Sum_probs=48.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      ++..+++||||   |...   .+.....++.+.+...  .|+-++||+++.  ...++...+..+.+.||     ..=++
T Consensus        82 ~~~D~vlIDT~---Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~--~~~~~~~~~~~~~~~~~-----~~~lI  146 (196)
T PF00448_consen   82 KGYDLVLIDTA---GRSP---RDEELLEELKKLLEAL--NPDEVHLVLSAT--MGQEDLEQALAFYEAFG-----IDGLI  146 (196)
T ss_dssp             TTSSEEEEEE----SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGG--GGGHHHHHHHHHHHHSS-----TCEEE
T ss_pred             cCCCEEEEecC---Ccch---hhHHHHHHHHHHhhhc--CCccceEEEecc--cChHHHHHHHHHhhccc-----CceEE
Confidence            34679999999   9864   3455666776655443  688999999985  34455555555555443     34566


Q ss_pred             EecCCCCCC
Q 044972          125 FTRGDELED  133 (307)
Q Consensus       125 fT~~D~L~~  133 (307)
                      ||+-|+-..
T Consensus       147 lTKlDet~~  155 (196)
T PF00448_consen  147 LTKLDETAR  155 (196)
T ss_dssp             EESTTSSST
T ss_pred             EEeecCCCC
Confidence            999887543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.70  E-value=5.2e-05  Score=72.65  Aligned_cols=62  Identities=15%  Similarity=-0.008  Sum_probs=44.0

Q ss_pred             CCCCCCcHHHHHHHHH----CC-CccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH
Q 044972            3 ACEYIKICTTTGNSIL----GR-RAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF   69 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL----G~-~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~   69 (307)
                      +|-||+||||++|++-    ++ ++..++. ..++|+......... +...|.+||||   |..-++..+.+
T Consensus       149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~-~pGVT~~V~~~iri~-~rp~vy~iDTP---Gil~P~I~~~e  215 (335)
T KOG2485|consen  149 VGVPNVGKSSLINALRNVHLRKKKAARVGA-EPGVTRRVSERIRIS-HRPPVYLIDTP---GILVPSIVDVE  215 (335)
T ss_pred             EcCCCCChHHHHHHHHHHHhhhccceeccC-CCCceeeehhheEec-cCCceEEecCC---CcCCCCCCCHH
Confidence            6999999999999884    32 2333332 356887665544344 78899999999   99877765543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.67  E-value=0.00045  Score=67.12  Aligned_cols=117  Identities=15%  Similarity=0.063  Sum_probs=75.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCc-eeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC----HHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTK-TCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD----FEFVSKEIVK   76 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~-~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~----~~~i~~eI~k   76 (307)
                      -+|=||+||||++|.|..-+.-..   ..+-|+ ....+...+.++..++|-|-|   ||-.-...    --+..+-|.+
T Consensus       164 LVG~PNaGKSTlls~vS~AkPKIa---dYpFTTL~PnLGvV~~~~~~sfv~ADIP---GLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         164 LVGLPNAGKSTLLSAVSAAKPKIA---DYPFTTLVPNLGVVRVDGGESFVVADIP---GLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             cccCCCCcHHHHHHHHhhcCCccc---CCccccccCcccEEEecCCCcEEEecCc---ccccccccCCCccHHHHHHHHh
Confidence            379999999999999987553322   223232 334444443367789999999   98643211    1345566666


Q ss_pred             HHHhcCCCCeEEEEEEeCCCCCC----HHHHHHHHHHHHhhcccc-CCeEEEEEecCCCCCC
Q 044972           77 CIGMAKDGIHAVLIVFSVRNRFS----EEEGAAIHSLESLFGKKV-FDYMIVVFTRGDELED  133 (307)
Q Consensus        77 cv~ls~pGpha~LLVl~~~~RfT----~ee~~~l~~i~~~FG~~~-~~~~IVLfT~~D~L~~  133 (307)
                      |-        ++|+|+++. ...    .++-.+|..=.+.|++.. -+..+||+++.|.+..
T Consensus       238 t~--------vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~  290 (369)
T COG0536         238 TR--------VLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD  290 (369)
T ss_pred             hh--------eeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence            64        778888886 443    345555555555677764 4678999999996544

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.00014  Score=71.60  Aligned_cols=78  Identities=18%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcccc---CCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKV---FDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~---~~~  120 (307)
                      .+..+++||||   |....   +..+.+++.. +. ....|+-.+||+++.+.  .++ ..++..+....|...   ...
T Consensus       214 ~~~DlVLIDTa---G~~~~---d~~l~e~La~-L~-~~~~~~~~lLVLsAts~--~~~l~evi~~f~~~~~~p~~~~~~~  283 (374)
T PRK14722        214 RNKHMVLIDTI---GMSQR---DRTVSDQIAM-LH-GADTPVQRLLLLNATSH--GDTLNEVVQAYRSAAGQPKAALPDL  283 (374)
T ss_pred             cCCCEEEEcCC---CCCcc---cHHHHHHHHH-Hh-ccCCCCeEEEEecCccC--hHHHHHHHHHHHHhhcccccccCCC
Confidence            56799999999   97642   2334445443 21 23345667788887522  222 234455554443221   235


Q ss_pred             EEEEEecCCCCC
Q 044972          121 MIVVFTRGDELE  132 (307)
Q Consensus       121 ~IVLfT~~D~L~  132 (307)
                      .=++||+-|+-.
T Consensus       284 ~~~I~TKlDEt~  295 (374)
T PRK14722        284 AGCILTKLDEAS  295 (374)
T ss_pred             CEEEEeccccCC
Confidence            677889988754

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.64  E-value=0.00062  Score=66.12  Aligned_cols=62  Identities=18%  Similarity=0.202  Sum_probs=38.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHH-HHHhhccccCCeEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHS-LESLFGKKVFDYMIV  123 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~-i~~~FG~~~~~~~IV  123 (307)
                      .|..++||||+   |+..+..   .    |.   .    -.|++|+|+..   -+..+...++. +.++ +      -||
T Consensus       147 ~g~d~viieT~---Gv~qs~~---~----i~---~----~aD~vlvv~~p---~~gd~iq~~k~gi~E~-a------DIi  199 (332)
T PRK09435        147 AGYDVILVETV---GVGQSET---A----VA---G----MVDFFLLLQLP---GAGDELQGIKKGIMEL-A------DLI  199 (332)
T ss_pred             cCCCEEEEECC---CCccchh---H----HH---H----hCCEEEEEecC---CchHHHHHHHhhhhhh-h------heE
Confidence            57899999999   9874331   1    21   1    26898888742   23444444333 3222 1      289


Q ss_pred             EEecCCCCCC
Q 044972          124 VFTRGDELED  133 (307)
Q Consensus       124 LfT~~D~L~~  133 (307)
                      |+|++|.+..
T Consensus       200 VVNKaDl~~~  209 (332)
T PRK09435        200 VINKADGDNK  209 (332)
T ss_pred             Eeehhcccch
Confidence            9999998764

>cd01873 RhoBTB RhoBTB subfamily

Probab=97.64  E-value=0.0008  Score=59.96  Aligned_cols=107  Identities=16%  Similarity=0.003  Sum_probs=61.2

Q ss_pred             CCCCCCCcHHHHHH-HHHCCC----ccccccCCCCCCce----eEEE-------EEEEeCCe--EEEEEeCCCCCCCCCC
Q 044972            2 CACEYIKICTTTGN-SILGRR----AFKSKVGSSEDTKT----CEMQ-------RTMLKDGQ--VVNVIDTPAIARLFDS   63 (307)
Q Consensus         2 ~~~~tGsGKSStgN-sILG~~----~F~s~~s~~svT~~----c~~~-------~~~~~~Gr--~v~VIDTP~~~Gl~Dt   63 (307)
                      .+|.+||||||+++ .+.+..    .|....   ..|..    ....       ...+ +|.  .+.+.|||   |..+.
T Consensus         7 ~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~---~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTa---G~~~~   79 (195)
T cd01873           7 VVGDNAVGKTRLICARACNKTLTQYQLLATH---VPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTF---GDHDK   79 (195)
T ss_pred             EECCCCcCHHHHHHHHHhCCCcccccCcccc---CCceecccceeEEeeeccccceee-CCEEEEEEEEeCC---CChhh
Confidence            37999999999997 444332    232221   11221    1111       1134 554  67899999   87431


Q ss_pred             CcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           64 SADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        64 ~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                                +.   .....+.|+||||+++.++-|-+..  .-+..+.... +  --.+|||-|+.|..
T Consensus        80 ----------~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~  133 (195)
T cd01873          80 ----------DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLR  133 (195)
T ss_pred             ----------hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcc
Confidence                      11   1356899999999998755443332  1233344332 2  23688899998853

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.62  E-value=0.00014  Score=72.38  Aligned_cols=72  Identities=17%  Similarity=0.152  Sum_probs=45.7

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf  125 (307)
                      +..+++||||   |-...   +.....++.+.+..  ..||.++||+++.  ....+   +..+.+.|..  ....=|+|
T Consensus       320 ~~DvVLIDTa---GRs~k---d~~lm~EL~~~lk~--~~PdevlLVLsAT--tk~~d---~~~i~~~F~~--~~idglI~  384 (436)
T PRK11889        320 RVDYILIDTA---GKNYR---ASETVEEMIETMGQ--VEPDYICLTLSAS--MKSKD---MIEIITNFKD--IHIDGIVF  384 (436)
T ss_pred             CCCEEEEeCc---cccCc---CHHHHHHHHHHHhh--cCCCeEEEEECCc--cChHH---HHHHHHHhcC--CCCCEEEE
Confidence            4689999999   87542   24455666555443  3578899999874  22333   1224444544  56677889


Q ss_pred             ecCCCCC
Q 044972          126 TRGDELE  132 (307)
Q Consensus       126 T~~D~L~  132 (307)
                      |+-|.-.
T Consensus       385 TKLDET~  391 (436)
T PRK11889        385 TKFDETA  391 (436)
T ss_pred             EcccCCC
Confidence            9988654

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=97.61  E-value=0.00034  Score=66.35  Aligned_cols=119  Identities=13%  Similarity=-0.005  Sum_probs=66.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC-CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCC--CCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG-SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLF--DSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s-~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~--Dt~~~~~~i~~eI~kcv~   79 (307)
                      .|.+|+||||++|.++-.+...-..+ -.+-|+ |..+. .  -|...++||.||+ |+-  .... ..+..+-....+.
T Consensus       142 ~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq-~in~f-~--v~~~~~~vDlPG~-~~a~y~~~~-~~d~~~~t~~Y~l  215 (320)
T KOG2486|consen  142 YGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ-AINHF-H--VGKSWYEVDLPGY-GRAGYGFEL-PADWDKFTKSYLL  215 (320)
T ss_pred             ecCCcccHHHHHhhhhhhhhhhhhcCCCCccce-eeeee-e--ccceEEEEecCCc-ccccCCccC-cchHhHhHHHHHH
Confidence            58999999999999998765432222 223333 33322 2  4778999999942 111  1111 1222222222222


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .-..-..+||||--.- .+-.-|-..+.++-+    .. =.+.+|||..|...+
T Consensus       216 eR~nLv~~FLLvd~sv-~i~~~D~~~i~~~ge----~~-VP~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  216 ERENLVRVFLLVDASV-PIQPTDNPEIAWLGE----NN-VPMTSVFTKCDKQKK  263 (320)
T ss_pred             hhhhhheeeeeeeccC-CCCCCChHHHHHHhh----cC-CCeEEeeehhhhhhh
Confidence            2223356777775433 666666666666543    33 356778999987644

>PRK02224 chromosome segregation protein; Provisional

Probab=97.61  E-value=0.023  Score=61.33  Aligned_cols=48  Identities=8%  Similarity=0.112  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972          101 EEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       101 ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+-.+|..++|-  +.+.++|+|.      .   ..+..++.. .|...+.++..--
T Consensus       110 ~~~~~~~~i~~llg~~~~~f~~~~~i~------Q---ge~~~~l~~-~p~~R~~ii~~l~  159 (880)
T PRK02224        110 GARDVREEVTELLRMDAEAFVNCAYVR------Q---GEVNKLINA-TPSDRQDMIDDLL  159 (880)
T ss_pred             ChHHHHHHHHHHHCCCHHHhcceeEee------c---cChHHHHcC-CHHHHHHHHHHHh
Confidence            344566778888884  4666666542      1   246677764 5667777777643

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.61  E-value=4.2e-05  Score=68.23  Aligned_cols=112  Identities=9%  Similarity=0.030  Sum_probs=65.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEE--eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTML--KDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~--~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|+.||||+|+.+.+.......+-      |.--......+  ..+..+.|||+|   |-.-..  . .+...+.     
T Consensus         9 ~Gps~SGKTaLf~~L~~~~~~~T~------tS~e~n~~~~~~~~~~~~~~lvD~P---GH~rlr--~-~~~~~~~-----   71 (181)
T PF09439_consen    9 VGPSGSGKTALFSQLVNGKTVPTV------TSMENNIAYNVNNSKGKKLRLVDIP---GHPRLR--S-KLLDELK-----   71 (181)
T ss_dssp             E-STTSSHHHHHHHHHHSS---B---------SSEEEECCGSSTCGTCECEEEET---T-HCCC--H-HHHHHHH-----
T ss_pred             EcCCCCCHHHHHHHHhcCCcCCee------ccccCCceEEeecCCCCEEEEEECC---CcHHHH--H-HHHHhhh-----
Confidence            699999999999999876433221      21111111111  156799999999   864322  2 2222221     


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc----CCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV----FDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~----~~~~IVLfT~~D~L~  132 (307)
                      ..+.+-+|+||++.. .+..+-+.+.+.|..++-...    .-.++|+.++-|...
T Consensus        72 ~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   72 YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            235688999999976 566666778888888775533    225666677777654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=97.60  E-value=0.00019  Score=64.52  Aligned_cols=111  Identities=17%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+....++.. |.....+.-.+.-  .....+ +|.  .+.|+||+   |..+..         ..++  .
T Consensus         9 lG~~gVGKSal~~qf~~~~-f~~~y~ptied~y--~k~~~v-~~~~~~l~ilDt~---g~~~~~---------~~~~--~   70 (196)
T KOG0395|consen    9 LGAGGVGKSALTIQFLTGR-FVEDYDPTIEDSY--RKELTV-DGEVCMLEILDTA---GQEEFS---------AMRD--L   70 (196)
T ss_pred             ECCCCCCcchheeeecccc-cccccCCCccccc--eEEEEE-CCEEEEEEEEcCC---CcccCh---------HHHH--H
Confidence            6999999999999888875 6655433322222  223345 554  66799999   832211         1111  2


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      +..+.|+||+|.++.++-+=++.. ....|...-|.+ .-.+|+|-++.|...
T Consensus        71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~  122 (196)
T KOG0395|consen   71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLER  122 (196)
T ss_pred             hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchh
Confidence            334669999999998666655533 333343332332 246888888888654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.59  E-value=9.5e-05  Score=73.90  Aligned_cols=95  Identities=18%  Similarity=0.160  Sum_probs=51.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |....+   .....++...+.. ...|+-++||++..  ....+   +..+...|..  ....=|+
T Consensus       298 ~~~DlVlIDt~---G~~~~d---~~~~~~L~~ll~~-~~~~~~~~LVl~a~--~~~~~---l~~~~~~f~~--~~~~~vI  363 (424)
T PRK05703        298 RDCDVILIDTA---GRSQRD---KRLIEELKALIEF-SGEPIDVYLVLSAT--TKYED---LKDIYKHFSR--LPLDGLI  363 (424)
T ss_pred             CCCCEEEEeCC---CCCCCC---HHHHHHHHHHHhc-cCCCCeEEEEEECC--CCHHH---HHHHHHHhCC--CCCCEEE
Confidence            45789999999   985432   3334455554442 22355666778765  23333   3334444442  2234588


Q ss_pred             EecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcC
Q 044972          125 FTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDN  166 (307)
Q Consensus       125 fT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnN  166 (307)
                      ||+.|.-..             ...+-.++...|--+..+-+
T Consensus       364 ~TKlDet~~-------------~G~i~~~~~~~~lPv~yit~  392 (424)
T PRK05703        364 FTKLDETSS-------------LGSILSLLIESGLPISYLTN  392 (424)
T ss_pred             Eeccccccc-------------ccHHHHHHHHHCCCEEEEeC
Confidence            999987432             11244555555555555544

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.57  E-value=0.00045  Score=69.86  Aligned_cols=70  Identities=10%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-FSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-fT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+.+++||||   |-       ++..+.+.    ....++|++|||+++... ...+.+..+. +...+|   .++.||+
T Consensus       116 ~~~i~~IDtP---GH-------~~fi~~m~----~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg---i~~iIVv  177 (460)
T PTZ00327        116 KRHVSFVDCP---GH-------DILMATML----NGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK---LKHIIIL  177 (460)
T ss_pred             cceEeeeeCC---CH-------HHHHHHHH----HHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC---CCcEEEE
Confidence            3689999999   83       33334433    334578999999998732 2333333333 333444   3689999


Q ss_pred             EecCCCCCC
Q 044972          125 FTRGDELED  133 (307)
Q Consensus       125 fT~~D~L~~  133 (307)
                      +|+.|....
T Consensus       178 lNKiDlv~~  186 (460)
T PTZ00327        178 QNKIDLVKE  186 (460)
T ss_pred             EecccccCH
Confidence            999997753

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.55  E-value=0.00012  Score=73.02  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=45.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..+++||||   |....   +..+.+++... . ....|+-.+||+++.  ...++   +..+...|..  ....=++
T Consensus       268 ~~~d~VLIDTa---Grsqr---d~~~~~~l~~l-~-~~~~~~~~~LVl~at--~~~~~---~~~~~~~f~~--~~~~~~I  332 (420)
T PRK14721        268 RGKHMVLIDTV---GMSQR---DQMLAEQIAML-S-QCGTQVKHLLLLNAT--SSGDT---LDEVISAYQG--HGIHGCI  332 (420)
T ss_pred             cCCCEEEecCC---CCCcc---hHHHHHHHHHH-h-ccCCCceEEEEEcCC--CCHHH---HHHHHHHhcC--CCCCEEE
Confidence            56789999999   98643   34456666542 1 123477788999875  22232   3344445543  5566778


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      ||+-|.-.
T Consensus       333 ~TKlDEt~  340 (420)
T PRK14721        333 ITKVDEAA  340 (420)
T ss_pred             EEeeeCCC
Confidence            99988754

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.55  E-value=0.00016  Score=71.63  Aligned_cols=71  Identities=17%  Similarity=0.008  Sum_probs=45.5

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf  125 (307)
                      +..++|||||   |...   .+.....++......  ..||.++||++.+  .+..+  +...+ ..|.  .....-++|
T Consensus       285 ~~D~VLIDTA---Gr~~---~d~~~l~EL~~l~~~--~~p~~~~LVLsag--~~~~d--~~~i~-~~f~--~l~i~glI~  349 (407)
T PRK12726        285 CVDHILIDTV---GRNY---LAEESVSEISAYTDV--VHPDLTCFTFSSG--MKSAD--VMTIL-PKLA--EIPIDGFII  349 (407)
T ss_pred             CCCEEEEECC---CCCc---cCHHHHHHHHHHhhc--cCCceEEEECCCc--ccHHH--HHHHH-HhcC--cCCCCEEEE
Confidence            5699999999   9854   235566677665443  3578888898764  33333  22322 2244  356677889


Q ss_pred             ecCCCC
Q 044972          126 TRGDEL  131 (307)
Q Consensus       126 T~~D~L  131 (307)
                      |+-|.-
T Consensus       350 TKLDET  355 (407)
T PRK12726        350 TKMDET  355 (407)
T ss_pred             EcccCC
Confidence            998864

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.00018  Score=76.43  Aligned_cols=75  Identities=16%  Similarity=0.171  Sum_probs=45.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc-CCeEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV-FDYMIV  123 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~-~~~~IV  123 (307)
                      .+..+++||||   |....+   ..+.+++.....  ...|+-++||++...  ..+   .+..+.+.|.... ....=+
T Consensus       262 ~~~D~VLIDTA---GRs~~d---~~l~eel~~l~~--~~~p~e~~LVLsAt~--~~~---~l~~i~~~f~~~~~~~i~gl  328 (767)
T PRK14723        262 GDKHLVLIDTV---GMSQRD---RNVSEQIAMLCG--VGRPVRRLLLLNAAS--HGD---TLNEVVHAYRHGAGEDVDGC  328 (767)
T ss_pred             cCCCEEEEeCC---CCCccC---HHHHHHHHHHhc--cCCCCeEEEEECCCC--cHH---HHHHHHHHHhhcccCCCCEE
Confidence            45689999999   976432   446666654322  335788899998752  222   3344444454321 245567


Q ss_pred             EEecCCCCC
Q 044972          124 VFTRGDELE  132 (307)
Q Consensus       124 LfT~~D~L~  132 (307)
                      +||+-|.-.
T Consensus       329 IlTKLDEt~  337 (767)
T PRK14723        329 IITKLDEAT  337 (767)
T ss_pred             EEeccCCCC
Confidence            799988753

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.54  E-value=0.00051  Score=76.55  Aligned_cols=118  Identities=15%  Similarity=0.129  Sum_probs=72.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC----HHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD----FEFVS   71 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~----~~~i~   71 (307)
                      .|++||||||+++.. |.+ |....       ...+.|+.|.-    | -..+-++|||+   |-+-+..+    +...-
T Consensus       117 iG~~gsGKtt~l~~s-gl~-~pl~~~~~~~~~~~~~~t~~c~w----w-f~~~avliDta---G~y~~~~~~~~~~~~~W  186 (1169)
T TIGR03348       117 IGPPGSGKTTLLQNS-GLK-FPLAERLGAAALRGVGGTRNCDW----W-FTDEAVLIDTA---GRYTTQDSDPEEDAAAW  186 (1169)
T ss_pred             ECCCCCchhHHHHhC-CCC-CcCchhhccccccCCCCCcccce----E-ecCCEEEEcCC---CccccCCCcccccHHHH
Confidence            699999999999876 665 42211       11234665643    3 44577899999   97644322    12222


Q ss_pred             HHHHHHHHhc--CCCCeEEEEEEeCCCCCC---HHH--------HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           72 KEIVKCIGMA--KDGIHAVLIVFSVRNRFS---EEE--------GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        72 ~eI~kcv~ls--~pGpha~LLVl~~~~RfT---~ee--------~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.+.+.-.  ...++.||+++++. .+.   +++        +..|..+...||-  --.+.||||+.|.+.+
T Consensus       187 ~~fL~~L~k~R~r~plnGvil~vs~~-~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~--~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLA-DLLTADPAERKAHARAIRQRLQELREQLGA--RFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEEEHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEEecchhhcC
Confidence            2333333333  34689999999987 443   332        2233445555554  4578899999998855

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=97.54  E-value=0.0012  Score=58.16  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=87.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      .|..|||||++++.++|.+.     +..+.|...+.++..+ .+.++++-|--   |=-           .+...-....
T Consensus        22 LGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvG---Gq~-----------~lr~~W~nYf   81 (185)
T KOG0073|consen   22 LGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVG---GQK-----------TLRSYWKNYF   81 (185)
T ss_pred             EecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcC---Ccc-----------hhHHHHHHhh
Confidence            48899999999999999983     3345677788899999 99999999999   731           2333333445


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCC-eEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFD-YMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR  161 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~-~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~  161 (307)
                      ...|++++|++...+..=+  .....++.+..++-.. -.++|+.+..++.+. -+.++ |..  --.|.++.+.|..|.
T Consensus        82 estdglIwvvDssD~~r~~--e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~-l~~~~-i~~--~~~L~~l~ks~~~~l  155 (185)
T KOG0073|consen   82 ESTDGLIWVVDSSDRMRMQ--ECKQELTELLVEERLAGAPLLVLANKQDLPGA-LSLEE-ISK--ALDLEELAKSHHWRL  155 (185)
T ss_pred             hccCeEEEEEECchHHHHH--HHHHHHHHHHhhhhhcCCceEEEEecCcCccc-cCHHH-HHH--hhCHHHhccccCceE
Confidence            6789999999875333222  2344556655554332 244445555555542 22222 111  124778878888877


Q ss_pred             EEEcC
Q 044972          162 VLFDN  166 (307)
Q Consensus       162 ~~fnN  166 (307)
                      +-..-
T Consensus       156 ~~cs~  160 (185)
T KOG0073|consen  156 VKCSA  160 (185)
T ss_pred             EEEec
Confidence            65543

>TIGR00092 GTP-binding protein YchF

Probab=97.53  E-value=0.00023  Score=70.01  Aligned_cols=81  Identities=9%  Similarity=-0.107  Sum_probs=53.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~   65 (307)
                      ++|.|||||||+.|.|.+..+-.+.. ...+|.....+...+|+.|                .+.++|.|   ||-....
T Consensus         7 ivGlPn~GKSTlfnaLT~~~~~~~a~-ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~Dia---Glv~gAs   82 (368)
T TIGR00092         7 IVGLPNVGKSTLFAATTNLLGNEAAN-PPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIA---GLVGGAS   82 (368)
T ss_pred             EECCCCCChHHHHHHHhCCCccccCC-CCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecc---ccccchh
Confidence            58999999999999999987522221 1234555566666665543                78999999   9864321


Q ss_pred             C----HHHHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972           66 D----FEFVSKEIVKCIGMAKDGIHAVLIVFSV   94 (307)
Q Consensus        66 ~----~~~i~~eI~kcv~ls~pGpha~LLVl~~   94 (307)
                      .    ...+...|.        ..|+++.|++.
T Consensus        83 ~g~Glgn~fL~~ir--------~~d~l~hVvr~  107 (368)
T TIGR00092        83 KGEGLGNQFLANIR--------EVDIIQHVVRC  107 (368)
T ss_pred             cccCcchHHHHHHH--------hCCEEEEEEeC
Confidence            1    123333333        36899999986

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.0009  Score=66.37  Aligned_cols=134  Identities=17%  Similarity=0.218  Sum_probs=81.1

Q ss_pred             CCCCCCcHHHHHHHHH---------------------CCCcccccc--------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSIL---------------------GRRAFKSKV--------GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---------------------G~~~F~s~~--------s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      .|.+.+||||++-.||                     |+.-|....        ...++|-.......+. +-+.+++||
T Consensus        13 iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k~~~tIiD   91 (428)
T COG5256          13 IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DKYNFTIID   91 (428)
T ss_pred             EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CCceEEEee
Confidence            5999999999886664                     333221100        0125565555555566 778999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      +|   |--      +.+...|     ..+.-.|+-+||++++..       .-.+.+. --.|....|   .++.||+.+
T Consensus        92 aP---GHr------dFvknmI-----tGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG---i~~lIVavN  153 (428)
T COG5256          92 AP---GHR------DFVKNMI-----TGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG---IKQLIVAVN  153 (428)
T ss_pred             CC---chH------HHHHHhh-----cchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC---CceEEEEEE
Confidence            99   832      2233332     223346799999998622       1122222 233455566   889999999


Q ss_pred             cCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972          127 RGDELEDNDETLEDYLGPECPKPLKEILQLCDNR  160 (307)
Q Consensus       127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R  160 (307)
                      +-|..+-+..-+++-.     ..+..|++.||--
T Consensus       154 KMD~v~wde~rf~ei~-----~~v~~l~k~~G~~  182 (428)
T COG5256         154 KMDLVSWDEERFEEIV-----SEVSKLLKMVGYN  182 (428)
T ss_pred             cccccccCHHHHHHHH-----HHHHHHHHHcCCC
Confidence            9998864323333333     2477788888853

>TIGR01069 mutS2 MutS2 family protein

Probab=97.45  E-value=0.018  Score=61.79  Aligned_cols=18  Identities=11%  Similarity=-0.322  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +||.|+||||+..+|.|.
T Consensus       328 tGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       328 TGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             ECCCCCCchHHHHHHHHH
Confidence            599999999999999876

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=97.40  E-value=0.0003  Score=65.75  Aligned_cols=101  Identities=16%  Similarity=0.082  Sum_probs=62.4

Q ss_pred             CCCCCCCcHHHHHHHHHCC-CccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcC-HHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGR-RAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSAD-FEFVSKEIVKC   77 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~-~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~-~~~i~~eI~kc   77 (307)
                      -+|+..+|||.+.|.|+|. ..|..+.+..++|+..-......+  ++..|+++||.   |++|...+ ...-.+-..-+
T Consensus        26 i~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDte---G~~~~~~~~~~~d~~if~Ls  102 (260)
T PF02263_consen   26 IVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTE---GLGDVEQSDEKYDAKIFALS  102 (260)
T ss_dssp             EEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEE---CBTTTTCCCCHHCHHHHHHH
T ss_pred             eecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecch---hccccccCcccccHHHHHHH
Confidence            4799999999999999986 469888877777765433222111  34689999999   99994322 22212222223


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES  111 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~  111 (307)
                      +.+|    .++|+-+. + .+++.+...|..+..
T Consensus       103 ~LLS----S~~IyN~~-~-~i~~~~l~~L~~~~~  130 (260)
T PF02263_consen  103 MLLS----SVLIYNSM-G-NIDEDDLDQLELFTE  130 (260)
T ss_dssp             HHH-----SEEEEEEC-S-SSSHHHHHCCHHHHH
T ss_pred             HHHh----CceeeCCC-C-ccchhHHHHHHHHHH
Confidence            3343    35655552 3 788887666555433

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PLN00023 GTP-binding protein; Provisional

Probab=97.40  E-value=0.0026  Score=61.87  Aligned_cols=111  Identities=12%  Similarity=0.038  Sum_probs=65.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE--EEEEEEeCC---------------eEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE--MQRTMLKDG---------------QVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~--~~~~~~~~G---------------r~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|..||||||+++.+++.. |....   ..|-.|.  .....+ ++               ..+.|.||+   |-..   
T Consensus        27 LGdsGVGKTSLI~rf~~g~-F~~~~---~pTIG~d~~ik~I~~-~~~~~~~~~ik~d~~k~v~LqIWDTA---GqEr---   95 (334)
T PLN00023         27 VGDSGVGKSSLVHLIVKGS-SIARP---PQTIGCTVGVKHITY-GSPGSSSNSIKGDSERDFFVELWDVS---GHER---   95 (334)
T ss_pred             ECCCCCcHHHHHHHHhcCC-ccccc---CCceeeeEEEEEEEE-CCcccccccccccCCceEEEEEEECC---CChh---
Confidence            6999999999999999865 54322   2233332  222333 21               358899999   7421   


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhc---------cc-cCCeEEEEEecCCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFG---------KK-VFDYMIVVFTRGDELE  132 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG---------~~-~~~~~IVLfT~~D~L~  132 (307)
                              ...+......+.+++|||+++.++-+-+.. .-+..+....+         +. .--.+|||-|+.|...
T Consensus        96 --------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         96 --------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             --------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence                    122333456789999999998754333322 12333333321         00 1235788899988643

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.34  E-value=0.00048  Score=68.22  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=43.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |....+   ..-..++.+.+....+ ++-++||+++...  ..+.   ..+..-|.  .....=++
T Consensus       253 ~~~DlVLIDTa---Gr~~~~---~~~l~el~~~l~~~~~-~~e~~LVlsat~~--~~~~---~~~~~~~~--~~~~~~~I  318 (388)
T PRK12723        253 KDFDLVLVDTI---GKSPKD---FMKLAEMKELLNACGR-DAEFHLAVSSTTK--TSDV---KEIFHQFS--PFSYKTVI  318 (388)
T ss_pred             CCCCEEEEcCC---CCCccC---HHHHHHHHHHHHhcCC-CCeEEEEEcCCCC--HHHH---HHHHHHhc--CCCCCEEE
Confidence            56799999999   976422   2224555555443333 4567889988633  2222   22223332  24566788


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      ||+-|.-.
T Consensus       319 ~TKlDet~  326 (388)
T PRK12723        319 FTKLDETT  326 (388)
T ss_pred             EEeccCCC
Confidence            99988643

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.32  E-value=0.0054  Score=52.90  Aligned_cols=74  Identities=18%  Similarity=0.151  Sum_probs=44.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |....   +.....++......  ..|+.++||++..  -..+....+..+.+.+|     ..-|+
T Consensus        81 ~~~d~viiDt~---g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~--~~~~~~~~~~~~~~~~~-----~~~vi  145 (173)
T cd03115          81 ENFDVVIVDTA---GRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAM--TGQDAVNQAKAFNEALG-----ITGVI  145 (173)
T ss_pred             CCCCEEEEECc---ccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECC--CChHHHHHHHHHHhhCC-----CCEEE
Confidence            46789999999   86531   34455555443221  3488999999874  12223333444443333     36677


Q ss_pred             EecCCCCCC
Q 044972          125 FTRGDELED  133 (307)
Q Consensus       125 fT~~D~L~~  133 (307)
                      +|+.|....
T Consensus       146 ltk~D~~~~  154 (173)
T cd03115         146 LTKLDGDAR  154 (173)
T ss_pred             EECCcCCCC
Confidence            799887654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=97.32  E-value=0.0012  Score=61.17  Aligned_cols=153  Identities=15%  Similarity=0.123  Sum_probs=77.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~l   80 (307)
                      .|+.||||||.-+.|.+.-. ..+.  .-+.|...........+...+.+.|.|   |-.+..... ......|      
T Consensus         5 mG~~~SGKTSi~~vIF~~~~p~dT~--~L~~T~~ve~~~v~~~~~~~l~iwD~p---Gq~~~~~~~~~~~~~~i------   73 (232)
T PF04670_consen    5 MGPRRSGKTSIRSVIFHKYSPRDTL--RLEPTIDVEKSHVRFLSFLPLNIWDCP---GQDDFMENYFNSQREEI------   73 (232)
T ss_dssp             EESTTSSHHHHHHHHHS---GGGGG--G-----SEEEEEEECTTSCEEEEEEE----SSCSTTHTTHTCCHHHH------
T ss_pred             EcCCCCChhhHHHHHHcCCCchhcc--ccCCcCCceEEEEecCCCcEEEEEEcC---CccccccccccccHHHH------
Confidence            49999999999999998743 3322  123455555555444255699999999   876432110 0011112      


Q ss_pred             cCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC-cccHHHhcCCCCCchHHHHHHhcC
Q 044972           81 AKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN-DETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        81 s~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~-~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                       ..+.+|+++|+++. ..+.+.=......+..+.--.---+.-|++-+.|.+.++ ...+-..+.    ..+.+.+...+
T Consensus        74 -f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~----~~i~~~~~~~~  148 (232)
T PF04670_consen   74 -FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQ----QRIRDELEDLG  148 (232)
T ss_dssp             -HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHH----HHHHHHHHHTT
T ss_pred             -HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHH----HHHHHHhhhcc
Confidence             24678999999987 344443333344444433223334555666666766542 111111121    23444444433


Q ss_pred             -CeEEEEcCCCCch
Q 044972          159 -NRRVLFDNKTKDA  171 (307)
Q Consensus       159 -~R~~~fnNk~~~~  171 (307)
                       +++..|--.-+|.
T Consensus       149 ~~~~~~~~TSI~D~  162 (232)
T PF04670_consen  149 IEDITFFLTSIWDE  162 (232)
T ss_dssp             -TSEEEEEE-TTST
T ss_pred             ccceEEEeccCcCc
Confidence             3577777666664

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.28  E-value=0.00066  Score=66.04  Aligned_cols=73  Identities=19%  Similarity=0.160  Sum_probs=45.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .|..++|||||   |...+   +..+..++.+.+..  -.||.++||+++.   +.+  .++.... .|-. +....-|+
T Consensus       221 ~~~DvVLIDTa---Gr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~---~g~--d~~~~a~-~f~~-~~~~~giI  285 (336)
T PRK14974        221 RGIDVVLIDTA---GRMHT---DANLMDELKKIVRV--TKPDLVIFVGDAL---AGN--DAVEQAR-EFNE-AVGIDGVI  285 (336)
T ss_pred             CCCCEEEEECC---CccCC---cHHHHHHHHHHHHh--hCCceEEEeeccc---cch--hHHHHHH-HHHh-cCCCCEEE
Confidence            45689999999   98753   35566666554433  2588999999875   222  2233322 2221 34567888


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      ||+-|.-.
T Consensus       286 lTKlD~~~  293 (336)
T PRK14974        286 LTKVDADA  293 (336)
T ss_pred             EeeecCCC
Confidence            99988754

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.22  E-value=0.0021  Score=66.18  Aligned_cols=70  Identities=16%  Similarity=0.094  Sum_probs=38.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIV  123 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IV  123 (307)
                      .+..++|||||   |+...   +.....++.. +...  .....+||++...  +..+. .+++.+.    .  ....-+
T Consensus       427 ~~~DLVLIDTa---G~s~~---D~~l~eeL~~-L~aa--~~~a~lLVLpAts--s~~Dl~eii~~f~----~--~~~~gv  489 (559)
T PRK12727        427 RDYKLVLIDTA---GMGQR---DRALAAQLNW-LRAA--RQVTSLLVLPANA--HFSDLDEVVRRFA----H--AKPQGV  489 (559)
T ss_pred             ccCCEEEecCC---Ccchh---hHHHHHHHHH-HHHh--hcCCcEEEEECCC--ChhHHHHHHHHHH----h--hCCeEE
Confidence            45789999999   98632   2233333332 1111  1335677888752  33332 2333333    2  245668


Q ss_pred             EEecCCCC
Q 044972          124 VFTRGDEL  131 (307)
Q Consensus       124 LfT~~D~L  131 (307)
                      |||+.|.-
T Consensus       490 ILTKlDEt  497 (559)
T PRK12727        490 VLTKLDET  497 (559)
T ss_pred             EEecCcCc
Confidence            99999873

>PRK01889 GTPase RsgA; Reviewed

Probab=97.21  E-value=0.00036  Score=68.14  Aligned_cols=55  Identities=22%  Similarity=0.125  Sum_probs=33.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      +|++|+||||++|+|+|.....++.-+      ...|+  ...-..++.|  ..++|||   |+.+..
T Consensus       201 vG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~--~~~l~~l~~~--~~l~Dtp---G~~~~~  261 (356)
T PRK01889        201 LGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTT--HRELHPLPSG--GLLIDTP---GMRELQ  261 (356)
T ss_pred             ECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhh--hccEEEecCC--CeecCCC---chhhhc
Confidence            699999999999999997654433211      11222  1222333222  3688999   986543

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.20  E-value=0.0024  Score=64.23  Aligned_cols=71  Identities=17%  Similarity=0.095  Sum_probs=46.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf  125 (307)
                      +..++|||||   |....   ++.+.+|+.......  .||.+|||+++...     ..++..... |.+. ....-|||
T Consensus       175 ~~DvVIIDTA---Gr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g-----q~av~~a~~-F~~~-l~i~gvIl  239 (437)
T PRK00771        175 KADVIIVDTA---GRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG-----QQAKNQAKA-FHEA-VGIGGIII  239 (437)
T ss_pred             cCCEEEEECC---Ccccc---hHHHHHHHHHHHHHh--cccceeEEEecccc-----HHHHHHHHH-HHhc-CCCCEEEE
Confidence            3589999999   87643   466777777654333  57889999987522     244555444 5543 44567788


Q ss_pred             ecCCCC
Q 044972          126 TRGDEL  131 (307)
Q Consensus       126 T~~D~L  131 (307)
                      |+.|.-
T Consensus       240 TKlD~~  245 (437)
T PRK00771        240 TKLDGT  245 (437)
T ss_pred             ecccCC
Confidence            998853

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.15  E-value=0.0083  Score=56.65  Aligned_cols=130  Identities=16%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCC-CC----CCCCCCcCH-HHH------
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPA-IA----RLFDSSADF-EFV------   70 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~-~~----Gl~Dt~~~~-~~i------   70 (307)
                      +|+||+||||+++.|.|.-.-.             .+...+ +|+.|.++|.+. +.    |+....... -++      
T Consensus       117 ~g~~g~GKttl~~~l~~~~~~~-------------~G~i~~-~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k  182 (270)
T TIGR02858       117 ISPPQCGKTTLLRDLARILSTG-------------ISQLGL-RGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK  182 (270)
T ss_pred             EcCCCCCHHHHHHHHhCccCCC-------------CceEEE-CCEEeecchhHHHHHHHhcccccccccccccccccchH
Confidence            6999999999999999864211             123356 899999888541 11    222211100 001      


Q ss_pred             HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchH
Q 044972           71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPL  150 (307)
Q Consensus        71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~L  150 (307)
                      ..-+..++.  +-.|+++|+==    ..+.++..   .+....-   -..++|+.||.+       ++++...   .+.|
T Consensus       183 ~~~~~~~i~--~~~P~villDE----~~~~e~~~---~l~~~~~---~G~~vI~ttH~~-------~~~~~~~---r~~~  240 (270)
T TIGR02858       183 AEGMMMLIR--SMSPDVIVVDE----IGREEDVE---ALLEALH---AGVSIIATAHGR-------DVEDLYK---RPVF  240 (270)
T ss_pred             HHHHHHHHH--hCCCCEEEEeC----CCcHHHHH---HHHHHHh---CCCEEEEEechh-------HHHHHHh---ChHH
Confidence            112222222  23788877632    22333322   2222221   247889999853       3455554   3579


Q ss_pred             HHHHHh-cCCeEEEEcCCC
Q 044972          151 KEILQL-CDNRRVLFDNKT  168 (307)
Q Consensus       151 k~Li~~-Cg~R~~~fnNk~  168 (307)
                      +.|++. ...|+++++++.
T Consensus       241 ~~l~~~~~~~r~i~L~~~~  259 (270)
T TIGR02858       241 KELIENEAFERYVVLSRRK  259 (270)
T ss_pred             HHHHhcCceEEEEEEecCC
Confidence            999976 468999998863

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.13  E-value=0.0064  Score=62.43  Aligned_cols=135  Identities=14%  Similarity=0.073  Sum_probs=92.7

Q ss_pred             CCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCC
Q 044972            4 CEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKD   83 (307)
Q Consensus         4 ~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~p   83 (307)
                      |..--||+|++..+=+..+....  ..+.|+..--....+|+|+.|++.|||   |--       .....-.    -.+.
T Consensus       160 GHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGAF~V~~p~G~~iTFLDTP---GHa-------AF~aMRa----RGA~  223 (683)
T KOG1145|consen  160 GHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGAFTVTLPSGKSITFLDTP---GHA-------AFSAMRA----RGAN  223 (683)
T ss_pred             ecccCChhhHHHHHhhCceehhh--cCCccceeceEEEecCCCCEEEEecCC---cHH-------HHHHHHh----ccCc
Confidence            66778999999999888776554  357888877777788899999999999   741       1111111    2344


Q ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcc-cHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972           84 GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDE-TLEDYLGPECPKPLKEILQLCDNRRV  162 (307)
Q Consensus        84 Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~-sie~yl~~~~~~~Lk~Li~~Cg~R~~  162 (307)
                      ..|+++||+.++...-++..++++..+.     +--.+||.+|+.|..+.+.+ ...+.+..  .    =.++..||-+-
T Consensus       224 vtDIvVLVVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~pekv~~eL~~~--g----i~~E~~GGdVQ  292 (683)
T KOG1145|consen  224 VTDIVVLVVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGANPEKVKRELLSQ--G----IVVEDLGGDVQ  292 (683)
T ss_pred             cccEEEEEEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCHHHHHHHHHHc--C----ccHHHcCCcee
Confidence            6789999999887777777777777665     67889999999997654211 12222221  0    12566777665


Q ss_pred             EEc
Q 044972          163 LFD  165 (307)
Q Consensus       163 ~fn  165 (307)
                      +.-
T Consensus       293 vip  295 (683)
T KOG1145|consen  293 VIP  295 (683)
T ss_pred             EEE
Confidence            544

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.13  E-value=0.00061  Score=58.79  Aligned_cols=71  Identities=11%  Similarity=0.056  Sum_probs=38.5

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHH-HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIV-KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~-kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      ..+++|||||   |+.++.    .+...+. .-.....-.++.+++|+++. +|-..-..     ...+.+.+..--+||
T Consensus        86 ~~d~I~IEt~---G~~~p~----~~~~~~~~~~~~~~~~~~d~vv~vvDa~-~~~~~~~~-----~~~~~~Qi~~ad~iv  152 (158)
T cd03112          86 AFDRIVIETT---GLADPG----PVAQTFFMDEELAERYLLDGVITLVDAK-HANQHLDQ-----QTEAQSQIAFADRIL  152 (158)
T ss_pred             CCCEEEEECC---CcCCHH----HHHHHHhhchhhhcceeeccEEEEEEhh-HhHHHhhc-----cHHHHHHHHHCCEEE
Confidence            4578899999   998743    3333221 11112233578889999876 55332111     122333333345667


Q ss_pred             EecCC
Q 044972          125 FTRGD  129 (307)
Q Consensus       125 fT~~D  129 (307)
                      +|+.|
T Consensus       153 lnk~d  157 (158)
T cd03112         153 LNKTD  157 (158)
T ss_pred             Eeccc
Confidence            78876

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.12  E-value=0.079  Score=58.77  Aligned_cols=128  Identities=13%  Similarity=0.068  Sum_probs=65.0

Q ss_pred             CCCCCCcHHHHHHHHH---CCCccccc---cC----CCCCCceeE-EEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972            3 ACEYIKICTTTGNSIL---GRRAFKSK---VG----SSEDTKTCE-MQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS   71 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~~~F~s~---~s----~~svT~~c~-~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~   71 (307)
                      +|+||+||||++..|.   +......+   .+    ....+..|. .....+ +|..+.|.=+|   .-.-.. ...   
T Consensus        36 ~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~v~~~F~~-~~~~y~~~~~~---~~~~~~-~~~---  107 (1047)
T PRK10246         36 TGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECLAEVEFEV-KGEAYRAFWSQ---NRARNQ-PDG---  107 (1047)
T ss_pred             ECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceEEEEEEEE-CCeEEEEEeeh---hhcccC-CCC---
Confidence            6999999999998885   22111100   00    011122232 233455 78777777666   211000 000   


Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCCCCCcccHHHhcCCCCCch
Q 044972           72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDELEDNDETLEDYLGPECPKP  149 (307)
Q Consensus        72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~  149 (307)
                               ....+.+.|+.+.-+..+......+...|..+.|=++  +..+|+|       .-  ..+..||.. .+..
T Consensus       108 ---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~v~l-------~Q--G~f~~fl~a-~~~e  168 (1047)
T PRK10246        108 ---------NLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLL-------SQ--GQFAAFLNA-KPKE  168 (1047)
T ss_pred             ---------ccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhheee-------cc--ccHHHHHhC-ChHH
Confidence                     0112333333322221233333445666777888654  5555554       22  467889986 5667


Q ss_pred             HHHHHHhc
Q 044972          150 LKEILQLC  157 (307)
Q Consensus       150 Lk~Li~~C  157 (307)
                      -++|+++-
T Consensus       169 R~~il~~l  176 (1047)
T PRK10246        169 RAELLEEL  176 (1047)
T ss_pred             HHHHHHHH
Confidence            77888763

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.0012  Score=65.01  Aligned_cols=121  Identities=18%  Similarity=0.294  Sum_probs=76.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEE-----EEEEe------C------C-------------------
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQ-----RTMLK------D------G-------------------   46 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~-----~~~~~------~------G-------------------   46 (307)
                      +|..-.||||++|.+|+.+.--...++.+.|..-...     .+.+|      +      |                   
T Consensus        64 ~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~  143 (532)
T KOG1954|consen   64 VGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPN  143 (532)
T ss_pred             EeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCCh
Confidence            6888999999999999987443444444444322210     01110      1      0                   


Q ss_pred             ---eEEEEEeCCCCCCCCCCCcCHHHHHH--HHHHHHHhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCe
Q 044972           47 ---QVVNVIDTPAIARLFDSSADFEFVSK--EIVKCIGMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        47 ---r~v~VIDTP~~~Gl~Dt~~~~~~i~~--eI~kcv~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~  120 (307)
                         ..|+|||||   |+.+....  .+.+  .....+.-.+...|.|+|+++.. -.++++-..++..++.     --+.
T Consensus       144 ~vLe~vtiVdtP---GILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-----~Edk  213 (532)
T KOG1954|consen  144 QVLESVTIVDTP---GILSGEKQ--RISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-----HEDK  213 (532)
T ss_pred             hhhhheeeeccC---cccccchh--cccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----Ccce
Confidence               379999999   98764321  0111  11111222345789999999865 2577777888877774     3567


Q ss_pred             EEEEEecCCCCCC
Q 044972          121 MIVVFTRGDELED  133 (307)
Q Consensus       121 ~IVLfT~~D~L~~  133 (307)
                      +-||++++|.++.
T Consensus       214 iRVVLNKADqVdt  226 (532)
T KOG1954|consen  214 IRVVLNKADQVDT  226 (532)
T ss_pred             eEEEeccccccCH
Confidence            8899999999876

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.03  E-value=0.0003  Score=65.07  Aligned_cols=79  Identities=19%  Similarity=0.114  Sum_probs=35.3

Q ss_pred             EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEe
Q 044972           48 VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFT  126 (307)
Q Consensus        48 ~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT  126 (307)
                      .+.+||||   |=-... ........|.+.+  ...+.-+++++++.. +++.-..-.-..+..+..- ..--..|+|+|
T Consensus        92 ~y~l~DtP---GQiElf-~~~~~~~~i~~~L--~~~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls  164 (238)
T PF03029_consen   92 DYLLFDTP---GQIELF-THSDSGRKIVERL--QKNGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLELPHVNVLS  164 (238)
T ss_dssp             SEEEEE-----SSHHHH-HHSHHHHHHHHTS--SS----EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred             cEEEEeCC---CCEEEE-EechhHHHHHHHH--hhhcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence            79999999   832110 0112333444433  225667888888875 6655333322222222111 23468999999


Q ss_pred             cCCCCCC
Q 044972          127 RGDELED  133 (307)
Q Consensus       127 ~~D~L~~  133 (307)
                      +.|.+..
T Consensus       165 K~Dl~~~  171 (238)
T PF03029_consen  165 KIDLLSK  171 (238)
T ss_dssp             -GGGS-H
T ss_pred             ccCcccc
Confidence            9999873

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK03918 chromosome segregation protein; Provisional

Probab=97.02  E-value=0.42  Score=51.47  Aligned_cols=42  Identities=14%  Similarity=0.178  Sum_probs=27.1

Q ss_pred             HHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972          105 AIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus       105 ~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      +-.+|..++|.+.+.++++|. .        ..+..++.  .|...++++...
T Consensus       113 ~~~~i~~~~~~~~f~~~~~~~-Q--------g~~~~~~~--~~~~r~~~~~~~  154 (880)
T PRK03918        113 VREWVERLIPYHVFLNAIYIR-Q--------GEIDAILE--SDESREKVVRQI  154 (880)
T ss_pred             HHHHHHHhcCHHHhceeEEEe-c--------cchHHHhc--CcHHHHHHHHHH
Confidence            345566678877777776653 1        24666775  367788888764

>PRK10867 signal recognition particle protein; Provisional

Probab=97.01  E-value=0.0045  Score=62.23  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |-...   ++.+..++.......  .|+-+|||++..   +.+  .++... ..|.+ ....+-||
T Consensus       182 ~~~DvVIIDTa---Grl~~---d~~lm~eL~~i~~~v--~p~evllVlda~---~gq--~av~~a-~~F~~-~~~i~giI  246 (433)
T PRK10867        182 NGYDVVIVDTA---GRLHI---DEELMDELKAIKAAV--NPDEILLVVDAM---TGQ--DAVNTA-KAFNE-ALGLTGVI  246 (433)
T ss_pred             cCCCEEEEeCC---CCccc---CHHHHHHHHHHHHhh--CCCeEEEEEecc---cHH--HHHHHH-HHHHh-hCCCCEEE
Confidence            45689999999   97542   345556665544333  577789999853   432  333333 23333 34556677


Q ss_pred             EecCCC
Q 044972          125 FTRGDE  130 (307)
Q Consensus       125 fT~~D~  130 (307)
                      +|+-|.
T Consensus       247 lTKlD~  252 (433)
T PRK10867        247 LTKLDG  252 (433)
T ss_pred             EeCccC
Confidence            898774

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.00  E-value=0.0059  Score=62.77  Aligned_cols=94  Identities=17%  Similarity=0.218  Sum_probs=59.1

Q ss_pred             eEEEEEeCCCCCCCCCCCcCH--HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           47 QVVNVIDTPAIARLFDSSADF--EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~~~~--~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      ...++||-|   |+.+|-..+  .+....|.+.-.-....|+||+|+++-| .... |+..+.-+..-+.+ .-+.||+|
T Consensus       412 qRMVLVDLP---GvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDA-ERSnVTDLVsq~DP-~GrRTIfV  485 (980)
T KOG0447|consen  412 QRMVLVDLP---GVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDA-ERSIVTDLVSQMDP-HGRRTIFV  485 (980)
T ss_pred             ceeEEecCC---chhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccch-hhhhHHHHHHhcCC-CCCeeEEE
Confidence            578999999   987763321  2233334333233346899999999977 5544 45555555554444 46789999


Q ss_pred             EecCCCCCCCcccHHHhcCCCCCchHHHHHH
Q 044972          125 FTRGDELEDNDETLEDYLGPECPKPLKEILQ  155 (307)
Q Consensus       125 fT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~  155 (307)
                      +|+.|.-+.+       +.  .|..++.+|+
T Consensus       486 LTKVDlAEkn-------lA--~PdRI~kIle  507 (980)
T KOG0447|consen  486 LTKVDLAEKN-------VA--SPSRIQQIIE  507 (980)
T ss_pred             Eeecchhhhc-------cC--CHHHHHHHHh
Confidence            9998865442       33  2556666664

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.99  E-value=0.0014  Score=66.68  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=40.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..+++|||+   |....+   ..+...+. .+.... .|+-.+||++....  .   ..+..+...|...  ...-++
T Consensus       333 ~d~d~VLIDTa---Gr~~~d---~~~~e~~~-~l~~~~-~p~e~~LVLdAt~~--~---~~l~~i~~~f~~~--~~~g~I  397 (484)
T PRK06995        333 RNKHIVLIDTI---GMSQRD---RMVSEQIA-MLHGAG-APVKRLLLLNATSH--G---DTLNEVVQAYRGP--GLAGCI  397 (484)
T ss_pred             cCCCeEEeCCC---CcChhh---HHHHHHHH-HHhccC-CCCeeEEEEeCCCc--H---HHHHHHHHHhccC--CCCEEE
Confidence            45689999999   875321   22333332 122121 26668899987522  2   3344455555443  344556


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      ||+.|.-.
T Consensus       398 lTKlDet~  405 (484)
T PRK06995        398 LTKLDEAA  405 (484)
T ss_pred             EeCCCCcc
Confidence            89988643

>COG2229 Predicted GTPase [General function prediction only]

Probab=96.93  E-value=0.02  Score=51.32  Aligned_cols=126  Identities=17%  Similarity=0.097  Sum_probs=70.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCc---ccc--ccCCCC---CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRA---FKS--KVGSSE---DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEI   74 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~---F~s--~~s~~s---vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI   74 (307)
                      .|+.|+||+|+.-.|.-+..   +..  ..+...   .|..-..++....++..+.++|||   |--       . .+.+
T Consensus        16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtP---Gq~-------R-F~fm   84 (187)
T COG2229          16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTP---GQE-------R-FKFM   84 (187)
T ss_pred             EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCC---CcH-------H-HHHH
Confidence            58999999999999987763   211  222222   222233455666244899999999   731       1 1111


Q ss_pred             HHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHH
Q 044972           75 VKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEIL  154 (307)
Q Consensus        75 ~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li  154 (307)
                         +.....|....+++++.....|.++...+..+...+-    -+.+|..|+-| |.+. .         .++.+++++
T Consensus        85 ---~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~D-L~~a-~---------ppe~i~e~l  146 (187)
T COG2229          85 ---WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQD-LFDA-L---------PPEKIREAL  146 (187)
T ss_pred             ---HHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccc-cCCC-C---------CHHHHHHHH
Confidence               2233456655555554433555566777777766432    45555555555 4431 1         234556666


Q ss_pred             Hhc
Q 044972          155 QLC  157 (307)
Q Consensus       155 ~~C  157 (307)
                      +.|
T Consensus       147 ~~~  149 (187)
T COG2229         147 KLE  149 (187)
T ss_pred             Hhc
Confidence            665

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=96.92  E-value=0.0045  Score=63.75  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=76.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC--CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS--SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~--~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|..|+||||++=+++..+ |.-..+.  ..+|--   . -..|+.-++++|||+   .-.+   +...+.+||.+    
T Consensus        15 iGD~G~GKtSLImSL~~ee-f~~~VP~rl~~i~IP---a-dvtPe~vpt~ivD~s---s~~~---~~~~l~~Eirk----   79 (625)
T KOG1707|consen   15 IGDEGVGKTSLIMSLLEEE-FVDAVPRRLPRILIP---A-DVTPENVPTSIVDTS---SDSD---DRLCLRKEIRK----   79 (625)
T ss_pred             ECCCCccHHHHHHHHHhhh-ccccccccCCccccC---C-ccCcCcCceEEEecc---cccc---hhHHHHHHHhh----
Confidence            6999999999999999876 4322211  111110   1 112356679999999   2211   23456677764    


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHH
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLED  140 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~  140 (307)
                          .||+.+|-.+++.-|-+-  ..-|-.|+..||+...-.+|+|=++.|...+...++++
T Consensus        80 ----A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~  137 (625)
T KOG1707|consen   80 ----ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV  137 (625)
T ss_pred             ----cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence                689999987762222221  22344578999999999999999999987764344444

>PRK14845 translation initiation factor IF-2; Provisional

Probab=96.91  E-value=0.0076  Score=66.48  Aligned_cols=104  Identities=16%  Similarity=0.060  Sum_probs=70.2

Q ss_pred             CcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCCCCcCHHHH
Q 044972            8 KICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-----------------QVVNVIDTPAIARLFDSSADFEFV   70 (307)
Q Consensus         8 sGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-----------------r~v~VIDTP~~~Gl~Dt~~~~~~i   70 (307)
                      ++|||++-.|-|.++....  +.+.|++.-.....++.+                 ..++|+|||   |..+       .
T Consensus       472 ~~KTtLLD~iR~t~v~~~E--aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTP---Ghe~-------F  539 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKE--AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTP---GHEA-------F  539 (1049)
T ss_pred             cccccHHHHHhCCCccccc--CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECC---CcHH-------H
Confidence            5799999999999885433  346676543333333111                 138999999   8421       1


Q ss_pred             HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...    ......++|++|||+++...++.+....+..+...     ...+||++|+.|...
T Consensus       540 ~~l----r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~  592 (1049)
T PRK14845        540 TSL----RKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP  592 (1049)
T ss_pred             HHH----HHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence            111    12245678999999999767888888888776652     347999999999764

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.91  E-value=0.017  Score=50.09  Aligned_cols=19  Identities=26%  Similarity=-0.153  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||+++.|.|..
T Consensus        32 ~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          32 LGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.83  E-value=0.012  Score=50.85  Aligned_cols=21  Identities=10%  Similarity=-0.292  Sum_probs=18.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~   22 (307)
                      .+|++|+||||+++.|.|...
T Consensus        33 l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          33 IVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             EECCCCCCHHHHHHHHHcCCC
Confidence            369999999999999999753

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.82  E-value=0.025  Score=50.03  Aligned_cols=97  Identities=10%  Similarity=-0.086  Sum_probs=53.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEE-eCCCCCCCCCCCcCHHHH-HHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVI-DTPAIARLFDSSADFEFV-SKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VI-DTP~~~Gl~Dt~~~~~~i-~~eI~kcv~l   80 (307)
                      +|+.|+||||++|.|.|-....+             +...+ +|..+.++ +.|   .     .|..+- .-.+.+++. 
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~~p~~-------------G~i~~-~g~~i~~~~q~~---~-----LSgGq~qrv~laral~-   87 (177)
T cd03222          31 VGPNGTGKTTAVKILAGQLIPNG-------------DNDEW-DGITPVYKPQYI---D-----LSGGELQRVAIAAALL-   87 (177)
T ss_pred             ECCCCChHHHHHHHHHcCCCCCC-------------cEEEE-CCEEEEEEcccC---C-----CCHHHHHHHHHHHHHh-
Confidence            59999999999999999742211             23346 77655443 223   2     333332 223444332 


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEec
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTR  127 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~  127 (307)
                        ..|.++||==|.. .++...+.. +..+.++- . ....+||+.||
T Consensus        88 --~~p~lllLDEPts-~LD~~~~~~l~~~l~~~~-~-~~~~tiiivsH  130 (177)
T cd03222          88 --RNATFYLFDEPSA-YLDIEQRLNAARAIRRLS-E-EGKKTALVVEH  130 (177)
T ss_pred             --cCCCEEEEECCcc-cCCHHHHHHHHHHHHHHH-H-cCCCEEEEEEC
Confidence              3677777755544 666655443 33333321 1 11258888887

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.81  E-value=0.0083  Score=57.05  Aligned_cols=18  Identities=6%  Similarity=-0.416  Sum_probs=15.6

Q ss_pred             CCCCCCCcHHHHHHHHHC
Q 044972            2 CACEYIKICTTTGNSILG   19 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG   19 (307)
                      .+|+|||||||+++.+.+
T Consensus        39 i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        39 ITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999999764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.79  E-value=0.023  Score=50.28  Aligned_cols=19  Identities=26%  Similarity=0.064  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|++|+||||+++.|.|-.
T Consensus        41 ~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          41 MGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.78  E-value=0.012  Score=51.11  Aligned_cols=20  Identities=20%  Similarity=-0.095  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+++.|.|...
T Consensus        34 ~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          34 IGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             ECCCCCCHHHHHHHHHhccC
Confidence            69999999999999999753

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.74  E-value=0.0031  Score=62.59  Aligned_cols=72  Identities=22%  Similarity=0.230  Sum_probs=44.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      ....+++|||-   |-..   .+.....++...+..+ +.++ +.||++++..  .+   .++.+.+-|+.  +...=++
T Consensus       280 ~~~d~ILVDTa---Grs~---~D~~~i~el~~~~~~~-~~i~-~~Lvlsat~K--~~---dlkei~~~f~~--~~i~~~I  344 (407)
T COG1419         280 RDCDVILVDTA---GRSQ---YDKEKIEELKELIDVS-HSIE-VYLVLSATTK--YE---DLKEIIKQFSL--FPIDGLI  344 (407)
T ss_pred             hcCCEEEEeCC---CCCc---cCHHHHHHHHHHHhcc-ccce-EEEEEecCcc--hH---HHHHHHHHhcc--CCcceeE
Confidence            44699999999   8753   2355666776655444 3344 4567777622  12   24445555554  5566677


Q ss_pred             EecCCCC
Q 044972          125 FTRGDEL  131 (307)
Q Consensus       125 fT~~D~L  131 (307)
                      ||+-|+-
T Consensus       345 ~TKlDET  351 (407)
T COG1419         345 FTKLDET  351 (407)
T ss_pred             EEccccc
Confidence            8988764

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.72  E-value=0.24  Score=54.03  Aligned_cols=121  Identities=16%  Similarity=0.127  Sum_probs=65.0

Q ss_pred             CCCCCCcHHHHHHHHH----CCCc----cccccCCCCCCc-eeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL----GRRA----FKSKVGSSEDTK-TCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE   73 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL----G~~~----F~s~~s~~svT~-~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e   73 (307)
                      +|+|||||||++.+|.    |...    |.........++ .+..-.... +|..+.|.=+-   +=..+. ++..    
T Consensus        31 ~G~nGsGKSSIldAI~~ALyG~~~~~~~~~~~~~i~~g~~~~~V~l~F~~-~g~~Y~i~R~~---~r~~~~-~~~~----  101 (908)
T COG0419          31 VGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIRAGEKSASVELEFEV-NGKKYRIEREF---RRGRGQ-STGS----  101 (908)
T ss_pred             ECCCCCcHHHHHHHHHHHHcCCCCCccchhhhHHHhcCCccEEEEEEEEE-CCEEEEEEeee---ccccCC-Cccc----
Confidence            7999999999999984    6654    433322222222 233334455 88877766542   111000 0000    


Q ss_pred             HHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHH
Q 044972           74 IVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLK  151 (307)
Q Consensus        74 I~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk  151 (307)
                                  -.  .+..-+.+.+.....+-..+..++|-+  .+.++|+|       +-  ..+..|+.. .|..-+
T Consensus       102 ------------~~--~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l-------~Q--Ge~~~fl~~-~~~er~  157 (908)
T COG0419         102 ------------LQ--IIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYL-------PQ--GEFDAFLKS-KPKERK  157 (908)
T ss_pred             ------------hh--hcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHhee-------cc--HhHHHHHhc-CcHHHH
Confidence                        00  011112244444446778899999976  44444443       22  357888886 555566


Q ss_pred             HHHHh
Q 044972          152 EILQL  156 (307)
Q Consensus       152 ~Li~~  156 (307)
                      .++..
T Consensus       158 ~il~~  162 (908)
T COG0419         158 EILDE  162 (908)
T ss_pred             HHHHH
Confidence            66665

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.70  E-value=0.025  Score=49.24  Aligned_cols=20  Identities=15%  Similarity=-0.180  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.|+||||+++.|.|-..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          32 LGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.67  E-value=0.003  Score=59.64  Aligned_cols=72  Identities=18%  Similarity=0.168  Sum_probs=45.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf  125 (307)
                      +..+++||||   |-...   +....+++...+...  .|+-++||+++.  ...++.  .. +.+.|..  ....=|+|
T Consensus       154 ~~D~ViIDt~---Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~--~~~~d~--~~-~~~~f~~--~~~~~~I~  218 (270)
T PRK06731        154 RVDYILIDTA---GKNYR---ASETVEEMIETMGQV--EPDYICLTLSAS--MKSKDM--IE-IITNFKD--IHIDGIVF  218 (270)
T ss_pred             CCCEEEEECC---CCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCc--cCHHHH--HH-HHHHhCC--CCCCEEEE
Confidence            5799999999   87532   245566666654433  567889999875  333332  12 3334554  56677889


Q ss_pred             ecCCCCC
Q 044972          126 TRGDELE  132 (307)
Q Consensus       126 T~~D~L~  132 (307)
                      |+-|.-.
T Consensus       219 TKlDet~  225 (270)
T PRK06731        219 TKFDETA  225 (270)
T ss_pred             EeecCCC
Confidence            9988654

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins

Probab=96.64  E-value=0.0028  Score=67.71  Aligned_cols=121  Identities=15%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             CCCCCcHHHHHHHHHCCCccccccC-C-CCCCceeEEEEEEE--eCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHH
Q 044972            4 CEYIKICTTTGNSILGRRAFKSKVG-S-SEDTKTCEMQRTML--KDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCI   78 (307)
Q Consensus         4 ~~tGsGKSStgNsILG~~~F~s~~s-~-~svT~~c~~~~~~~--~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv   78 (307)
                      |+-+|||||++|.+.|.. |.+-.. . ..+|+..-......  .....+.|+|+-   |........ ....+... .+
T Consensus         2 g~qssgkstlln~lf~t~-f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~e---g~d~~er~~~~~fe~~~a-lf   76 (742)
T PF05879_consen    2 GSQSSGKSTLLNHLFGTQ-FDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVE---GTDGRERGEDQDFERKSA-LF   76 (742)
T ss_pred             CCCCCcHHHHHHHHHCCC-ccccccccccccchhhHHHhccccccCCCceEEEeCC---CCCchhhccccchHHHHH-HH
Confidence            899999999999999986 655322 1 12332221111111  024588999999   887654322 22333222 22


Q ss_pred             HhcCCCCeEEEEE---EeCCCCCCHHHHHHH----HHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           79 GMAKDGIHAVLIV---FSVRNRFSEEEGAAI----HSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        79 ~ls~pGpha~LLV---l~~~~RfT~ee~~~l----~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      .++  =.+++|+-   .++| |+...-.-.|    +.-..+||..  .-..+.+||.--|...
T Consensus        77 ~la--~s~~~iiN~w~~~iG-~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~  136 (742)
T PF05879_consen   77 ALA--VSDVLIINMWEHDIG-RYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTG  136 (742)
T ss_pred             HHH--hhhheeeehhhhhhh-hhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCC
Confidence            222  24565554   4677 8888765544    4457799876  5677888888877665

It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.63  E-value=0.035  Score=48.23  Aligned_cols=20  Identities=10%  Similarity=-0.235  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+++.|.|...
T Consensus        34 ~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          34 LGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             ECCCCCCHHHHHHHHhccCC
Confidence            59999999999999999753

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR00959 ffh signal recognition particle protein

Probab=96.60  E-value=0.011  Score=59.42  Aligned_cols=71  Identities=20%  Similarity=0.254  Sum_probs=42.5

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |....   ++.+..++......  -.|+.++||++..   |.+  .++... ..|... ...+=|+
T Consensus       181 ~~~DvVIIDTa---Gr~~~---d~~l~~eL~~i~~~--~~p~e~lLVvda~---tgq--~~~~~a-~~f~~~-v~i~giI  245 (428)
T TIGR00959       181 NGFDVVIVDTA---GRLQI---DEELMEELAAIKEI--LNPDEILLVVDAM---TGQ--DAVNTA-KTFNER-LGLTGVV  245 (428)
T ss_pred             cCCCEEEEeCC---Ccccc---CHHHHHHHHHHHHh--hCCceEEEEEecc---chH--HHHHHH-HHHHhh-CCCCEEE
Confidence            45689999999   87542   34566666554432  2578889999864   332  233332 233322 3455666


Q ss_pred             EecCCC
Q 044972          125 FTRGDE  130 (307)
Q Consensus       125 fT~~D~  130 (307)
                      +|+-|.
T Consensus       246 lTKlD~  251 (428)
T TIGR00959       246 LTKLDG  251 (428)
T ss_pred             EeCccC
Confidence            898774

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.60  E-value=0.011  Score=56.44  Aligned_cols=96  Identities=22%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             eEEEEEeCCCCCCC---CCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH------HHHHHHHHHhhcccc
Q 044972           47 QVVNVIDTPAIARL---FDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE------GAAIHSLESLFGKKV  117 (307)
Q Consensus        47 r~v~VIDTP~~~Gl---~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee------~~~l~~i~~~FG~~~  117 (307)
                      ...++||||   |-   |--+.+-.-|.      -.++..+|-++++|++.. |-|..-      ..+-..+.+     .
T Consensus       116 ~~~~liDTP---GQIE~FtWSAsGsIIt------e~lass~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyk-----t  180 (366)
T KOG1532|consen  116 FDYVLIDTP---GQIEAFTWSASGSIIT------ETLASSFPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYK-----T  180 (366)
T ss_pred             cCEEEEcCC---CceEEEEecCCccchH------hhHhhcCCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHh-----c
Confidence            468999999   84   22222222222      235567899999999875 444332      122222222     3


Q ss_pred             CCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972          118 FDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR  161 (307)
Q Consensus       118 ~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~  161 (307)
                      .-..||||++.|....  .-..+|+.+  =+.+++-+...+.-|
T Consensus       181 klp~ivvfNK~Dv~d~--~fa~eWm~D--fE~FqeAl~~~~~~y  220 (366)
T KOG1532|consen  181 KLPFIVVFNKTDVSDS--EFALEWMTD--FEAFQEALNEAESSY  220 (366)
T ss_pred             cCCeEEEEeccccccc--HHHHHHHHH--HHHHHHHHHhhccch
Confidence            5579999999997665  556677754  456788777644444

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=96.56  E-value=0.0062  Score=59.15  Aligned_cols=115  Identities=15%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH------HHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF------VSKEIV   75 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~------i~~eI~   75 (307)
                      -||=||+||||++|.+.+-....-. .. =.|-+...+.+..|+|+.+.+.||-   ||.+ +++..-      ..++++
T Consensus       183 vVGYTNaGKsTLikaLT~Aal~p~d-rL-FATLDpT~h~a~Lpsg~~vlltDTv---GFis-dLP~~LvaAF~ATLeeVa  256 (410)
T KOG0410|consen  183 VVGYTNAGKSTLIKALTKAALYPND-RL-FATLDPTLHSAHLPSGNFVLLTDTV---GFIS-DLPIQLVAAFQATLEEVA  256 (410)
T ss_pred             EEeecCccHHHHHHHHHhhhcCccc-hh-heeccchhhhccCCCCcEEEEeech---hhhh-hCcHHHHHHHHHHHHHHh
Confidence            4799999999999999965432111 11 1133444566778899999999999   9974 233222      223332


Q ss_pred             HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc---cCCeEEEEEecCCC
Q 044972           76 KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK---VFDYMIVVFTRGDE  130 (307)
Q Consensus        76 kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~---~~~~~IVLfT~~D~  130 (307)
                              ..|++|-|.++..+.-++.+..+-...+-.|-.   -+.++|=|-+..|.
T Consensus       257 --------eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~  306 (410)
T KOG0410|consen  257 --------EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY  306 (410)
T ss_pred             --------hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence                    468899999987444444555555555545542   24456666665554

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.56  E-value=0.67  Score=47.25  Aligned_cols=16  Identities=6%  Similarity=-0.232  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|++|+||||++.+|.
T Consensus        33 ~G~NG~GKStll~aI~   48 (562)
T PHA02562         33 TGKNGAGKSTMLEALT   48 (562)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999998873

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=96.53  E-value=0.021  Score=60.66  Aligned_cols=111  Identities=19%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC----------------CCCCceeEEEEEEEeCC-eEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS----------------SEDTKTCEMQRTMLKDG-QVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~----------------~svT~~c~~~~~~~~~G-r~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|+-.+|||||.-+||=..-..++...                .+.|-+....+..| .| ..|++||||   |--|-. 
T Consensus        16 ~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTP---GHVDFt-   90 (697)
T COG0480          16 VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTP---GHVDFT-   90 (697)
T ss_pred             EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCC---CccccH-
Confidence            467899999999999844332222111                12333333446788 86 999999999   977632 


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                            .|+.+.+..    .|+.++|+++......+-...++...+.     --..|+++++-|.+..
T Consensus        91 ------~EV~rslrv----lDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a  143 (697)
T COG0480          91 ------IEVERSLRV----LDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGA  143 (697)
T ss_pred             ------HHHHHHHHh----hcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECcccccc
Confidence                  244444333    4677778877546666665565555542     3467888899888764

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.45  E-value=0.0085  Score=48.21  Aligned_cols=96  Identities=21%  Similarity=0.117  Sum_probs=55.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      .|+||+|||++...+...-                        |.++.-||.+   -+.+...  .+....+...+..+.
T Consensus         4 ~G~~G~GKT~l~~~la~~l------------------------~~~~~~i~~~---~~~~~~~--~~~~~~i~~~~~~~~   54 (132)
T PF00004_consen    4 HGPPGTGKTTLARALAQYL------------------------GFPFIEIDGS---ELISSYA--GDSEQKIRDFFKKAK   54 (132)
T ss_dssp             ESSTTSSHHHHHHHHHHHT------------------------TSEEEEEETT---HHHTSST--THHHHHHHHHHHHHH
T ss_pred             ECcCCCCeeHHHHHHHhhc------------------------cccccccccc---ccccccc--ccccccccccccccc
Confidence            5999999999999886431                        2245667777   6653322  222233333333321


Q ss_pred             C--CCeEEEEEEeCCCCCCHH--------HHHHHHHHHHhhccccC--CeEEEEEecCC
Q 044972           83 D--GIHAVLIVFSVRNRFSEE--------EGAAIHSLESLFGKKVF--DYMIVVFTRGD  129 (307)
Q Consensus        83 p--Gpha~LLVl~~~~RfT~e--------e~~~l~~i~~~FG~~~~--~~~IVLfT~~D  129 (307)
                      .  .| .+|++-.++ .+...        ....+..+...|.....  ..++|++|--+
T Consensus        55 ~~~~~-~vl~iDe~d-~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~  111 (132)
T PF00004_consen   55 KSAKP-CVLFIDEID-KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS  111 (132)
T ss_dssp             HTSTS-EEEEEETGG-GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred             ccccc-eeeeeccch-hcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence            1  24 666666665 44433        46677888888776544  34666666443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.43  E-value=0.022  Score=49.04  Aligned_cols=19  Identities=16%  Similarity=-0.202  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||+++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          32 LGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=96.42  E-value=0.014  Score=60.12  Aligned_cols=134  Identities=16%  Similarity=0.142  Sum_probs=79.0

Q ss_pred             CCCCCCcHHHHHHHHH---CC-----------Ccccccc---------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSIL---GR-----------RAFKSKV---------------GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~-----------~~F~s~~---------------s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      .|...+||||+.-.+|   |.           +.+..+.               ...+||........+- .-+.+++||
T Consensus       183 ~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-~~~~~tliD  261 (603)
T KOG0458|consen  183 LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-KSKIVTLID  261 (603)
T ss_pred             EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-CceeEEEec
Confidence            5899999999987764   33           1122111               1236776655555554 778999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC-CCCCH-----HHHHHHHHHHHhhccccCCeEEEEEec
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR-NRFSE-----EEGAAIHSLESLFGKKVFDYMIVVFTR  127 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~-~RfT~-----ee~~~l~~i~~~FG~~~~~~~IVLfT~  127 (307)
                      +|   |.-|-  .+    ..|.     ...-.|+-+||+++. +-|..     ...+-...+...||   ..+.||++|+
T Consensus       262 aP---GhkdF--i~----nmi~-----g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg---i~qlivaiNK  324 (603)
T KOG0458|consen  262 AP---GHKDF--IP----NMIS-----GASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG---ISQLIVAINK  324 (603)
T ss_pred             CC---Ccccc--ch----hhhc-----cccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---cceEEEEeec
Confidence            99   84331  11    1121     122345666777664 23332     12333455666777   8899999999


Q ss_pred             CCCCCCCcccHHHhcCCCCCchHHHHH-HhcCC
Q 044972          128 GDELEDNDETLEDYLGPECPKPLKEIL-QLCDN  159 (307)
Q Consensus       128 ~D~L~~~~~sie~yl~~~~~~~Lk~Li-~~Cg~  159 (307)
                      -|.+.=....+++ |.+    .|..++ +.||-
T Consensus       325 mD~V~Wsq~RF~e-Ik~----~l~~fL~~~~gf  352 (603)
T KOG0458|consen  325 MDLVSWSQDRFEE-IKN----KLSSFLKESCGF  352 (603)
T ss_pred             ccccCccHHHHHH-HHH----HHHHHHHHhcCc
Confidence            9987643233433 222    477777 77775

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=96.40  E-value=0.0071  Score=59.45  Aligned_cols=79  Identities=13%  Similarity=-0.053  Sum_probs=46.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------------CCeEEEEEeCCCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------------DGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------------~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      -||.|||||||++|+|....+-....+.  +|-....+...+|                 -=-+|.+||.+   ||--..
T Consensus         7 IVGlPNVGKSTlFnAlT~~~a~~aNYPF--~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIA---GLV~GA   81 (372)
T COG0012           7 IVGLPNVGKSTLFNALTKAGAEIANYPF--CTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIA---GLVKGA   81 (372)
T ss_pred             EecCCCCcHHHHHHHHHcCCccccCCCc--ccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEec---ccCCCc
Confidence            3899999999999999987642222211  2222222222221                 11378899999   885321


Q ss_pred             -----cCHHHHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972           65 -----ADFEFVSKEIVKCIGMAKDGIHAVLIVFSV   94 (307)
Q Consensus        65 -----~~~~~i~~eI~kcv~ls~pGpha~LLVl~~   94 (307)
                           +.+ .....|.        ..|||+.|++.
T Consensus        82 s~GeGLGN-kFL~~IR--------evdaI~hVVr~  107 (372)
T COG0012          82 SKGEGLGN-KFLDNIR--------EVDAIIHVVRC  107 (372)
T ss_pred             ccCCCcch-HHHHhhh--------hcCeEEEEEEe
Confidence                 222 2223333        47899999876

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.39  E-value=0.083  Score=44.64  Aligned_cols=92  Identities=9%  Similarity=-0.001  Sum_probs=51.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe-EEEEEeCCCCCCCCCCCcCHHHHHH-HHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ-VVNVIDTPAIARLFDSSADFEFVSK-EIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr-~v~VIDTP~~~Gl~Dt~~~~~~i~~-eI~kcv~l   80 (307)
                      +|++|+||||++|.|.|-....+             +...+ +|. .+.++  |   .     .|.....+ .|.+++  
T Consensus        32 ~G~nGsGKStLl~~l~G~~~~~~-------------G~i~~-~~~~~i~~~--~---~-----lS~G~~~rv~laral--   85 (144)
T cd03221          32 VGRNGAGKSTLLKLIAGELEPDE-------------GIVTW-GSTVKIGYF--E---Q-----LSGGEKMRLALAKLL--   85 (144)
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCc-------------eEEEE-CCeEEEEEE--c---c-----CCHHHHHHHHHHHHH--
Confidence            69999999999999999753211             22344 553 23332  3   2     33333222 344443  


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHH-HHHHhhccccCCeEEEEEecC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIH-SLESLFGKKVFDYMIVVFTRG  128 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~-~i~~~FG~~~~~~~IVLfT~~  128 (307)
                       ...|.++|+==|.. .++...+..+. .+..+      ..+||+.||.
T Consensus        86 -~~~p~illlDEP~~-~LD~~~~~~l~~~l~~~------~~til~~th~  126 (144)
T cd03221          86 -LENPNLLLLDEPTN-HLDLESIEALEEALKEY------PGTVILVSHD  126 (144)
T ss_pred             -hcCCCEEEEeCCcc-CCCHHHHHHHHHHHHHc------CCEEEEEECC
Confidence             23677777654544 56555544433 33332      4588888874

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.37  E-value=0.058  Score=46.59  Aligned_cols=20  Identities=5%  Similarity=-0.212  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.|+||||+++.|+|.-.
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          33 TGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCC
Confidence            69999999999999999753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.32  E-value=0.028  Score=42.13  Aligned_cols=65  Identities=20%  Similarity=0.067  Sum_probs=37.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      .|.+|+|||++.+.+.-.=.. .+.           ....+ +  .++++|+|   |..+.....         + ....
T Consensus         5 ~g~~G~Gktt~~~~l~~~l~~-~g~-----------~v~~~-~--d~iivD~~---~~~~~~~~~---------~-~~~~   56 (99)
T cd01983           5 TGKGGVGKTTLAANLAAALAK-RGK-----------RVLLI-D--DYVLIDTP---PGLGLLVLL---------C-LLAL   56 (99)
T ss_pred             ECCCCCCHHHHHHHHHHHHHH-CCC-----------eEEEE-C--CEEEEeCC---CCccchhhh---------h-hhhh
Confidence            367799999999888643111 110           11223 3  78999999   776532110         0 1122


Q ss_pred             CCCeEEEEEEeCC
Q 044972           83 DGIHAVLIVFSVR   95 (307)
Q Consensus        83 pGpha~LLVl~~~   95 (307)
                      ..+|.+++|+..+
T Consensus        57 ~~~~~vi~v~~~~   69 (99)
T cd01983          57 LAADLVIIVTTPE   69 (99)
T ss_pred             hhCCEEEEecCCc
Confidence            3567777777665

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=96.31  E-value=1.1  Score=48.50  Aligned_cols=15  Identities=13%  Similarity=-0.144  Sum_probs=13.2

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      .||.++|||++.-+|
T Consensus       333 TGpN~gGKTt~lkti  347 (782)
T PRK00409        333 TGPNTGGKTVTLKTL  347 (782)
T ss_pred             ECCCCCCcHHHHHHH
Confidence            699999999998766

>TIGR00618 sbcc exonuclease SbcC

Probab=96.28  E-value=0.67  Score=51.39  Aligned_cols=129  Identities=15%  Similarity=0.068  Sum_probs=62.0

Q ss_pred             CCCCCCcHHHHHHHHH----CCCccccc--cCC----CCCCceeEE-EEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972            3 ACEYIKICTTTGNSIL----GRRAFKSK--VGS----SEDTKTCEM-QRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS   71 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL----G~~~F~s~--~s~----~svT~~c~~-~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~   71 (307)
                      +|++|+||||++..|.    |...-.+.  ...    ...|..|.. -...+ +|..+.|.-.|   ......... ...
T Consensus        32 ~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~F~~-~g~~y~~~r~~---~~~~~~~~~-~~~  106 (1042)
T TIGR00618        32 CGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELEFSL-GTKIYRVHRTL---RCTRSHRKT-EQP  106 (1042)
T ss_pred             ECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEEEEE-CCEEEEEEEee---eeeccCCCC-cch
Confidence            6999999999999997    75321100  000    112333432 23456 88888766655   221100000 000


Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHH
Q 044972           72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLK  151 (307)
Q Consensus        72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk  151 (307)
                      ..+   +.+. ++.+        |..+......+-..|..++|=+.-.|+-+++     +.-  ..+..|+.. .|...+
T Consensus       107 ~~~---~~~~-~~~~--------g~~~~~~~~~~~~~i~~llGld~~~F~~~~~-----l~Q--g~~~~fl~a-~~~eR~  166 (1042)
T TIGR00618       107 EQL---YLEQ-KKGR--------GRILAAKKSETEEVIHDLLKLDYKTFTRVVL-----LPQ--GEFAQFLKA-KSKEKK  166 (1042)
T ss_pred             hhh---hhhh-cCCC--------CcccccchHHHHHHHHHHhCCCHHHHhhhee-----ecc--cchHHHHhC-CHHHHH
Confidence            000   0110 1111        1011122234556677888866544432322     222  346778875 567778


Q ss_pred             HHHHh
Q 044972          152 EILQL  156 (307)
Q Consensus       152 ~Li~~  156 (307)
                      +++..
T Consensus       167 ~il~~  171 (1042)
T TIGR00618       167 ELLMN  171 (1042)
T ss_pred             HHHHH
Confidence            88866

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=96.26  E-value=0.011  Score=50.21  Aligned_cols=121  Identities=20%  Similarity=0.202  Sum_probs=73.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++|.||+|+.|++-|....--+      |..     .+| +.+  -.||||   |.+=   .+..    ..+.+.-..
T Consensus         7 vG~~gcGKTtL~q~L~G~~~lykK------TQA-----ve~-~d~--~~IDTP---GEy~---~~~~----~Y~aL~tt~   62 (148)
T COG4917           7 VGQVGCGKTTLFQSLYGNDTLYKK------TQA-----VEF-NDK--GDIDTP---GEYF---EHPR----WYHALITTL   62 (148)
T ss_pred             ecccccCchhHHHHhhcchhhhcc------cce-----eec-cCc--cccCCc---hhhh---hhhH----HHHHHHHHh
Confidence            799999999999999998754211      211     234 222  258999   9752   2222    223344455


Q ss_pred             CCCeEEEEEEeCCC---CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           83 DGIHAVLIVFSVRN---RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        83 pGpha~LLVl~~~~---RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+++++|..++.   +|.+           .|-.-..+.+|=|.|+.|.-++  ..|+         ..+.++...| 
T Consensus        63 ~dadvi~~v~~and~~s~f~p-----------~f~~~~~k~vIgvVTK~DLaed--~dI~---------~~~~~L~eaG-  119 (148)
T COG4917          63 QDADVIIYVHAANDPESRFPP-----------GFLDIGVKKVIGVVTKADLAED--ADIS---------LVKRWLREAG-  119 (148)
T ss_pred             hccceeeeeecccCccccCCc-----------ccccccccceEEEEecccccch--HhHH---------HHHHHHHHcC-
Confidence            67899999998762   4432           2222234569999999997654  3332         2345555556 


Q ss_pred             eEEEEcCCCCc
Q 044972          160 RRVLFDNKTKD  170 (307)
Q Consensus       160 R~~~fnNk~~~  170 (307)
                      ..++|--..-+
T Consensus       120 a~~IF~~s~~d  130 (148)
T COG4917         120 AEPIFETSAVD  130 (148)
T ss_pred             CcceEEEeccC
Confidence            66666544433

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.26  E-value=0.064  Score=46.80  Aligned_cols=20  Identities=20%  Similarity=0.064  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+++.|.|...
T Consensus        32 ~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          32 AGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK01156 chromosome segregation protein; Provisional

Probab=96.25  E-value=2  Score=46.65  Aligned_cols=16  Identities=6%  Similarity=-0.197  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|++||||||++.+|.
T Consensus        29 ~G~NGsGKSsileAI~   44 (895)
T PRK01156         29 TGKNGAGKSSIVDAIR   44 (895)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999998874

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.20  E-value=0.067  Score=47.90  Aligned_cols=19  Identities=16%  Similarity=-0.184  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|.-
T Consensus        43 ~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         43 QGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EcCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

>KOG2484 consensus GTPase [General function prediction only]

Probab=96.16  E-value=0.0031  Score=62.44  Aligned_cols=55  Identities=16%  Similarity=0.100  Sum_probs=40.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|=|||||||++|+++-+++-.++. ..++|+.-+-    +.-+..|.++|.|   |+-=+..
T Consensus       258 iG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqe----V~Ldk~i~llDsP---giv~~~~  312 (435)
T KOG2484|consen  258 IGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQE----VKLDKKIRLLDSP---GIVPPSI  312 (435)
T ss_pred             ecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhh----eeccCCceeccCC---ceeecCC
Confidence            6889999999999999988765553 3467765432    2256799999999   9864443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.14  E-value=0.086  Score=58.12  Aligned_cols=21  Identities=24%  Similarity=0.039  Sum_probs=17.7

Q ss_pred             CCCCCCCcHHHHHHHHH---CCCc
Q 044972            2 CACEYIKICTTTGNSIL---GRRA   22 (307)
Q Consensus         2 ~~~~tGsGKSStgNsIL---G~~~   22 (307)
                      -+||.|||||-++-++|   |.++
T Consensus       113 IvGPNGSGKSNVIDsmLFVFGfRA  136 (1293)
T KOG0996|consen  113 IVGPNGSGKSNVIDSMLFVFGFRA  136 (1293)
T ss_pred             eECCCCCCchHHHHHHHHHhhhhH
Confidence            47999999999999986   6553

>TIGR00606 rad50 rad50

Probab=96.11  E-value=1.1  Score=50.92  Aligned_cols=15  Identities=13%  Similarity=-0.270  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|++|+||||++..|
T Consensus        34 ~G~NGaGKTTil~ai   48 (1311)
T TIGR00606        34 VGPNGAGKTTIIECL   48 (1311)
T ss_pred             ECCCCCCHHHHHHHH
Confidence            799999999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.10  E-value=0.43  Score=52.01  Aligned_cols=76  Identities=16%  Similarity=0.051  Sum_probs=40.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh-c
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM-A   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l-s   81 (307)
                      +|+||+|||++...|..+ ... +    .+.       ..+ .|.++..+|..   .+........+..+.+...+.. .
T Consensus       205 ~G~pGvGKT~l~~~la~~-i~~-~----~vp-------~~l-~~~~~~~l~l~---~l~ag~~~~g~~e~~lk~~~~~~~  267 (857)
T PRK10865        205 IGEPGVGKTAIVEGLAQR-IIN-G----EVP-------EGL-KGRRVLALDMG---ALVAGAKYRGEFEERLKGVLNDLA  267 (857)
T ss_pred             ECCCCCCHHHHHHHHHHH-hhc-C----CCc-------hhh-CCCEEEEEehh---hhhhccchhhhhHHHHHHHHHHHH
Confidence            699999999999876543 111 1    110       112 56788888888   6653322222233333333322 1


Q ss_pred             CCCCeEEEEEEeCC
Q 044972           82 KDGIHAVLIVFSVR   95 (307)
Q Consensus        82 ~pGpha~LLVl~~~   95 (307)
                      ..+..+|||+-.+.
T Consensus       268 ~~~~~~ILfIDEih  281 (857)
T PRK10865        268 KQEGNVILFIDELH  281 (857)
T ss_pred             HcCCCeEEEEecHH
Confidence            22445677775554

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.08  E-value=0.026  Score=56.60  Aligned_cols=112  Identities=21%  Similarity=0.253  Sum_probs=75.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccc-ccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKS-KVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s-~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|.---||||+.-++.|...-.- ...-.+.|.+-....... ....+.+||+|   |--|      .+     +.+.-.
T Consensus         6 ~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvp---gh~~------~i-----~~miag   70 (447)
T COG3276           6 AGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVP---GHPD------FI-----SNLLAG   70 (447)
T ss_pred             eeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCC---CcHH------HH-----HHHHhh
Confidence            46667799999999988653211 112235566666666666 55599999999   7532      22     223344


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..|+|..|||++.+..++.+..+.+..+. +||   .++.|||+|+.|..++
T Consensus        71 ~~~~d~alLvV~~deGl~~qtgEhL~iLd-llg---i~~giivltk~D~~d~  118 (447)
T COG3276          71 LGGIDYALLVVAADEGLMAQTGEHLLILD-LLG---IKNGIIVLTKADRVDE  118 (447)
T ss_pred             hcCCceEEEEEeCccCcchhhHHHHHHHH-hcC---CCceEEEEeccccccH
Confidence            56899999999986577777666655443 444   6789999999998864

>cd01855 YqeH YqeH

Probab=96.05  E-value=0.003  Score=55.38  Aligned_cols=22  Identities=18%  Similarity=-0.099  Sum_probs=19.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccc
Q 044972            3 ACEYIKICTTTGNSILGRRAFK   24 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~   24 (307)
                      +|.|||||||++|+|++.....
T Consensus       133 ~G~~nvGKStliN~l~~~~~~~  154 (190)
T cd01855         133 VGATNVGKSTLINALLKKDNGK  154 (190)
T ss_pred             EcCCCCCHHHHHHHHHHhcccc
Confidence            7999999999999999987644

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.02  E-value=0.038  Score=43.99  Aligned_cols=20  Identities=15%  Similarity=-0.230  Sum_probs=17.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      +.|+||+|||++++.|...-
T Consensus        24 i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          24 LYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            47999999999999998753

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=95.98  E-value=0.061  Score=55.45  Aligned_cols=136  Identities=18%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             CCCcHHHHHHHHHCCCccccccC-------------CCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHH
Q 044972            6 YIKICTTTGNSILGRRAFKSKVG-------------SSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFV   70 (307)
Q Consensus         6 tGsGKSStgNsILG~~~F~s~~s-------------~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i   70 (307)
                      ---||||+.-.||-...|.-...             -.+.|-..+..+..|.+|  .-+++||||   |--|-+      
T Consensus        69 VDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP---GHvDFs------  139 (650)
T KOG0462|consen   69 VDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP---GHVDFS------  139 (650)
T ss_pred             ecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC---Cccccc------
Confidence            34699999999985433322111             125666666666667332  689999999   876643      


Q ss_pred             HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchH
Q 044972           71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPL  150 (307)
Q Consensus        71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~L  150 (307)
                       -|+.+.+..|    +.+|||++++...-.+....+..-.+     .---+|.|+++.|.-..+   .+ .+..    .+
T Consensus       140 -~EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad---pe-~V~~----q~  201 (650)
T KOG0462|consen  140 -GEVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD---PE-RVEN----QL  201 (650)
T ss_pred             -ceehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC---HH-HHHH----HH
Confidence             2455555444    46778888764554444443333222     233467778888765432   22 2221    46


Q ss_pred             HHHHHhcCCeEEEEcCCC
Q 044972          151 KEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       151 k~Li~~Cg~R~~~fnNk~  168 (307)
                      +++...|+..+....-+.
T Consensus       202 ~~lF~~~~~~~i~vSAK~  219 (650)
T KOG0462|consen  202 FELFDIPPAEVIYVSAKT  219 (650)
T ss_pred             HHHhcCCccceEEEEecc
Confidence            677777777666665554

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=95.95  E-value=0.12  Score=46.45  Aligned_cols=17  Identities=12%  Similarity=-0.293  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++|+||||++++|.+
T Consensus        34 ~G~NGsGKSTll~~i~~   50 (213)
T cd03279          34 CGPTGAGKSTILDAITY   50 (213)
T ss_pred             ECCCCCCHHHHHHHhee
Confidence            69999999999999973

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.94  E-value=0.11  Score=45.84  Aligned_cols=17  Identities=18%  Similarity=-0.349  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+.|+||||++|.|++
T Consensus        27 ~G~nG~GKSTLl~~il~   43 (176)
T cd03238          27 TGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            69999999999999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.89  E-value=0.13  Score=45.33  Aligned_cols=19  Identities=26%  Similarity=0.053  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|..
T Consensus        39 ~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          39 MGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999963

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=95.89  E-value=0.013  Score=55.32  Aligned_cols=102  Identities=13%  Similarity=0.090  Sum_probs=66.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      .|=|-|||||+.-.|.+...-..  +..-.|-+|..+.... +|..|-++|-|   |+........--.+.    +...+
T Consensus        68 IGfPSVGKStlLs~iT~T~SeaA--~yeFTTLtcIpGvi~y-~ga~IQllDLP---GIieGAsqgkGRGRQ----viavA  137 (364)
T KOG1486|consen   68 IGFPSVGKSTLLSKITSTHSEAA--SYEFTTLTCIPGVIHY-NGANIQLLDLP---GIIEGASQGKGRGRQ----VIAVA  137 (364)
T ss_pred             ecCCCccHHHHHHHhhcchhhhh--ceeeeEEEeecceEEe-cCceEEEecCc---ccccccccCCCCCce----EEEEe
Confidence            47899999999999988642111  1123467899999899 99999999999   886432111111111    11233


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK  116 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~  116 (307)
                      .-.|+||+|+++.  =++..+..++.=.+..|-.
T Consensus       138 rtaDlilMvLDat--k~e~qr~~le~ELe~vGiR  169 (364)
T KOG1486|consen  138 RTADLILMVLDAT--KSEDQREILEKELEAVGIR  169 (364)
T ss_pred             ecccEEEEEecCC--cchhHHHHHHHHHHHhcee
Confidence            4578999999875  3455566677655555544

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=95.89  E-value=0.08  Score=54.14  Aligned_cols=108  Identities=18%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      .|.---|||||+-.|=+.++....  +.+.|++.-.....++  ++..|++||||   |-       +....       +
T Consensus        11 mGHVDHGKTtLLD~IR~t~Va~~E--aGGITQhIGA~~v~~~~~~~~~itFiDTP---GH-------eAFt~-------m   71 (509)
T COG0532          11 MGHVDHGKTTLLDKIRKTNVAAGE--AGGITQHIGAYQVPLDVIKIPGITFIDTP---GH-------EAFTA-------M   71 (509)
T ss_pred             eCcccCCccchhhhHhcCcccccc--CCceeeEeeeEEEEeccCCCceEEEEcCC---cH-------HHHHH-------H
Confidence            377778999999999888876533  4578887766666663  34899999999   63       11111       1


Q ss_pred             cCCC---CeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972           81 AKDG---IHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN  134 (307)
Q Consensus        81 s~pG---pha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~  134 (307)
                      -+.|   -|.++||+.++.-+-++...++...+.     +--.+||..++.|..+.+
T Consensus        72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~-----a~vP~iVAiNKiDk~~~n  123 (509)
T COG0532          72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKA-----AGVPIVVAINKIDKPEAN  123 (509)
T ss_pred             HhcCCccccEEEEEEEccCCcchhHHHHHHHHHH-----CCCCEEEEEecccCCCCC
Confidence            1223   478899999987888888888888886     466899999999998654

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.85  E-value=0.035  Score=57.49  Aligned_cols=104  Identities=13%  Similarity=-0.001  Sum_probs=62.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCcc-ccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAF-KSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F-~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      .+||||.||||++.+++.+-.- .......++|-    .++   .-|.|+++..|            .++...|- ..  
T Consensus        74 vvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv----vsg---K~RRiTflEcp------------~Dl~~miD-va--  131 (1077)
T COG5192          74 VVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV----VSG---KTRRITFLECP------------SDLHQMID-VA--  131 (1077)
T ss_pred             eecCCCCChhHHHHHHHHHHHHhhhhccCCceEE----eec---ceeEEEEEeCh------------HHHHHHHh-HH--
Confidence            4799999999999999865210 10111122221    111   23689999999            22222221 11  


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                        .=.|.+||.++..-.|--+....|..+.    +.-+-.++=|.||-|....
T Consensus       132 --KIaDLVlLlIdgnfGfEMETmEFLnil~----~HGmPrvlgV~ThlDlfk~  178 (1077)
T COG5192         132 --KIADLVLLLIDGNFGFEMETMEFLNILI----SHGMPRVLGVVTHLDLFKN  178 (1077)
T ss_pred             --HhhheeEEEeccccCceehHHHHHHHHh----hcCCCceEEEEeecccccC
Confidence              1257888888765456444444444433    4568889999999998876

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=95.84  E-value=0.11  Score=46.16  Aligned_cols=45  Identities=18%  Similarity=0.008  Sum_probs=25.7

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHH-HHHHHhhccccCCeEEEEEecCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAI-HSLESLFGKKVFDYMIVVFTRGD  129 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l-~~i~~~FG~~~~~~~IVLfT~~D  129 (307)
                      ..+|.++|+==+.. .++..+...+ ..+...+-  ....++|+.||..
T Consensus       106 ~~~p~llllDEp~~-glD~~~~~~i~~~~l~~l~--~~~~~vi~~tH~~  151 (200)
T cd03280         106 ADPDSLVLLDELGS-GTDPVEGAALAIAILEELL--ERGALVIATTHYG  151 (200)
T ss_pred             CCCCcEEEEcCCCC-CCCHHHHHHHHHHHHHHHH--hcCCEEEEECCHH
Confidence            45777776654444 6777776655 22332221  1246888899853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.74  E-value=0.11  Score=45.32  Aligned_cols=19  Identities=11%  Similarity=-0.223  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|.-
T Consensus        31 ~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          31 LGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=95.68  E-value=0.063  Score=54.50  Aligned_cols=107  Identities=18%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             CCcHHHHHHHHHCCC-ccccccCC-------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHH
Q 044972            7 IKICTTTGNSILGRR-AFKSKVGS-------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSK   72 (307)
Q Consensus         7 GsGKSStgNsILG~~-~F~s~~s~-------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~   72 (307)
                      --||+|+...+|.+. .|......             .+.|--.......| +|..|+|||||   |--|-..       
T Consensus        15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTP---GHADFGG-------   83 (603)
T COG1217          15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTP---GHADFGG-------   83 (603)
T ss_pred             cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCC---CcCCccc-------
Confidence            469999999999764 35332110             12332222334468 99999999999   7766543       


Q ss_pred             HHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           73 EIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        73 eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      |+-+.+++    +|.+||++++..-.-++.+-+++.-.+     .--.-|||.++.|....
T Consensus        84 EVERvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~-----~gL~PIVVvNKiDrp~A  135 (603)
T COG1217          84 EVERVLSM----VDGVLLLVDASEGPMPQTRFVLKKALA-----LGLKPIVVINKIDRPDA  135 (603)
T ss_pred             hhhhhhhh----cceEEEEEEcccCCCCchhhhHHHHHH-----cCCCcEEEEeCCCCCCC
Confidence            33333333    567777777643333444555544333     13356777888876543

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=95.67  E-value=0.058  Score=43.33  Aligned_cols=92  Identities=16%  Similarity=0.109  Sum_probs=47.5

Q ss_pred             CCCCCCcHHHHHHHHHC-------CCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILG-------RRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIV   75 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG-------~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~   75 (307)
                      .++.|+|||++.=.+-.       .++.-......              .+-.++|||||   +.++.     .    ..
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--------------~~~D~IIiDtp---p~~~~-----~----~~   59 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--------------FGDDYVVVDLG---RSLDE-----V----SL   59 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--------------CCCCEEEEeCC---CCcCH-----H----HH
Confidence            57899999997755533       22221111111              22278999999   65531     1    11


Q ss_pred             HHHHhcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEe
Q 044972           76 KCIGMAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        76 kcv~ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ..+    ...|.+|+|+..+ .++-..-. .++.+.. .+..-..++.+|++
T Consensus        60 ~~l----~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~-~~~~~~~~~~lVvN  105 (106)
T cd03111          60 AAL----DQADRVFLVTQQD-LPSIRNAKRLLELLRV-LDYSLPAKIELVLN  105 (106)
T ss_pred             HHH----HHcCeEEEEecCC-hHHHHHHHHHHHHHHH-cCCCCcCceEEEec
Confidence            112    2347888888766 55444432 3334443 23221335555554

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.059  Score=49.64  Aligned_cols=94  Identities=12%  Similarity=0.042  Sum_probs=57.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+.+||||++.=-++-.. +.  ....|.+..|  +.... +...+++||-|   |-.       .+..   +|.....
T Consensus        44 ~Gl~dSGKT~LF~qL~~gs-~~--~TvtSiepn~--a~~r~-gs~~~~LVD~P---GH~-------rlR~---kl~e~~~  104 (238)
T KOG0090|consen   44 VGLSDSGKTSLFTQLITGS-HR--GTVTSIEPNE--ATYRL-GSENVTLVDLP---GHS-------RLRR---KLLEYLK  104 (238)
T ss_pred             EecCCCCceeeeeehhcCC-cc--Ceeeeeccce--eeEee-cCcceEEEeCC---CcH-------HHHH---HHHHHcc
Confidence            6999999999986665332 11  1111222222  22333 44568999999   842       2222   2222222


Q ss_pred             C--CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc
Q 044972           83 D--GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK  116 (307)
Q Consensus        83 p--Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~  116 (307)
                      .  ..-+|+||++.- -|..+-+.+-+.+..+.-..
T Consensus       105 ~~~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~  139 (238)
T KOG0090|consen  105 HNYSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDS  139 (238)
T ss_pred             ccccceeEEEEEecc-ccchhhHHHHHHHHHHHHhh
Confidence            1  467899999876 88888888888888877554

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=95.61  E-value=0.035  Score=49.25  Aligned_cols=18  Identities=17%  Similarity=0.062  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++|+||||+++.|.|.
T Consensus        32 ~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          32 MGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999997

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=95.60  E-value=0.09  Score=46.71  Aligned_cols=18  Identities=17%  Similarity=-0.272  Sum_probs=16.1

Q ss_pred             CCCCCCCcHHHHHHHHHC
Q 044972            2 CACEYIKICTTTGNSILG   19 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG   19 (307)
                      ..|+.|+||||+..+|.+
T Consensus        34 l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          34 ITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             EECCCCCccHHHHHHHHH
Confidence            369999999999999984

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.52  E-value=0.045  Score=45.05  Aligned_cols=19  Identities=11%  Similarity=-0.380  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|+||+|||++++.|++.-
T Consensus         5 ~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           5 FGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            6999999999999997653

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.50  E-value=0.18  Score=42.24  Aligned_cols=98  Identities=18%  Similarity=0.092  Sum_probs=53.2

Q ss_pred             CCCCCCCcHHHHHHHHH------CCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSIL------GRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIV   75 (307)
Q Consensus         2 ~~~~tGsGKSStgNsIL------G~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~   75 (307)
                      +.|..|+|||++.=.+.      |..+-.......         ...+ + ..++|||||   +..+.     .. ..+ 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~---------~~~~-~-yd~VIiD~p---~~~~~-----~~-~~~-   63 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLG---------LANL-D-YDYIIIDTG---AGISD-----NV-LDF-   63 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC---------CCCC-C-CCEEEEECC---CCCCH-----HH-HHH-
Confidence            57899999999864442      222211111110         0111 1 588999999   64431     11 112 


Q ss_pred             HHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           76 KCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        76 kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                        +.    ..|.+|+|+..+ ..+-.. ..+++.+....   ...++.+|+++.+.
T Consensus        64 --l~----~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~  109 (139)
T cd02038          64 --FL----AADEVIVVTTPE-PTSITDAYALIKKLAKQL---RVLNFRVVVNRAES  109 (139)
T ss_pred             --HH----hCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc---CCCCEEEEEeCCCC
Confidence              22    247888888776 554433 34455554432   24467788998753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=95.49  E-value=0.0073  Score=63.68  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=50.3

Q ss_pred             eEEEEEeCCCCCCCCCCC--cCHHHHHHHHHHHHHhcCCCCeEEEEEE-eCCCCCCHHHHHHHHHHHHhhccccCCeEEE
Q 044972           47 QVVNVIDTPAIARLFDSS--ADFEFVSKEIVKCIGMAKDGIHAVLIVF-SVRNRFSEEEGAAIHSLESLFGKKVFDYMIV  123 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~--~~~~~i~~eI~kcv~ls~pGpha~LLVl-~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IV  123 (307)
                      -.+++||.|   |+.+.-  ..++++..+|..-+......|+.++|++ ++...+...  .+++..+++  +.-...|+-
T Consensus       132 ~~lTLvDlP---G~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats--~alkiarev--Dp~g~RTig  204 (657)
T KOG0446|consen  132 ANLTLVDLP---GLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATS--PALVVAREV--DPGGSRTLE  204 (657)
T ss_pred             chhhhcCCC---CCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcC--HHHHHHHhh--CCCccchhH
Confidence            367899999   997653  3456777777776666666777766655 443222222  233333432  123568999


Q ss_pred             EEecCCCCCC
Q 044972          124 VFTRGDELED  133 (307)
Q Consensus       124 LfT~~D~L~~  133 (307)
                      |.|++|..+.
T Consensus       205 vitK~Dlmdk  214 (657)
T KOG0446|consen  205 VITKFDFMDK  214 (657)
T ss_pred             HhhhHHhhhc
Confidence            9999987754

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.073  Score=54.99  Aligned_cols=20  Identities=25%  Similarity=-0.090  Sum_probs=18.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+.|.|+|.-.
T Consensus       353 vG~SGaGKSTLl~lL~G~~~  372 (559)
T COG4988         353 VGASGAGKSTLLNLLLGFLA  372 (559)
T ss_pred             ECCCCCCHHHHHHHHhCcCC
Confidence            79999999999999999754

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.44  E-value=0.23  Score=42.10  Aligned_cols=19  Identities=16%  Similarity=-0.186  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|.-
T Consensus        31 ~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          31 VGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=95.39  E-value=0.055  Score=55.51  Aligned_cols=92  Identities=16%  Similarity=0.156  Sum_probs=54.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC------------eEEEEEe-CCCCCCCCC-------
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG------------QVVNVID-TPAIARLFD-------   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G------------r~v~VID-TP~~~Gl~D-------   62 (307)
                      +|++||||||++|.|+|--...++             ...+ ||            +.|.+|. -|   -||+       
T Consensus       361 VG~sGsGKSTl~~LL~r~~~~~~G-------------~I~i-dg~dI~~i~~~~lr~~I~~V~Qd~---~LF~~TI~~NI  423 (567)
T COG1132         361 VGPSGSGKSTLIKLLLRLYDPTSG-------------EILI-DGIDIRDISLDSLRKRIGIVSQDP---LLFSGTIRENI  423 (567)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCCC-------------eEEE-CCEehhhcCHHHHHHhccEEcccc---eeecccHHHHH
Confidence            799999999999999996433221             1122 33            2334443 33   3443       


Q ss_pred             ----CCcCHHHHHHHHHHH-----HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhh
Q 044972           63 ----SSADFEFVSKEIVKC-----IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLF  113 (307)
Q Consensus        63 ----t~~~~~~i~~eI~kc-----v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~F  113 (307)
                          ++.+++++.+....+     +...+.|.|.++=  .-|..++.-+++.+..-+.+.
T Consensus       424 ~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg--e~G~~LSgGQrQrlaiARall  481 (567)
T COG1132         424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG--ERGVNLSGGQRQRLAIARALL  481 (567)
T ss_pred             hcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceec--CCCccCCHHHHHHHHHHHHHh
Confidence                334555655544433     2222336666543  334589999999988888764

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=95.36  E-value=0.18  Score=44.14  Aligned_cols=74  Identities=15%  Similarity=0.160  Sum_probs=42.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .|.|||||||++-. +..+.|.-.   ...|...  ...+..+ +|.  .+-+.||.   |        .+.-++|..  
T Consensus        14 igDsgVGKssLl~r-F~ddtFs~s---YitTiGvDfkirTv~i-~G~~VkLqIwDtA---G--------qErFrtits--   75 (198)
T KOG0079|consen   14 IGDSGVGKSSLLLR-FADDTFSGS---YITTIGVDFKIRTVDI-NGDRVKLQIWDTA---G--------QERFRTITS--   75 (198)
T ss_pred             ecCCcccHHHHHHH-Hhhcccccc---eEEEeeeeEEEEEeec-CCcEEEEEEeecc---c--------HHHHHHHHH--
Confidence            58999999999853 344445311   1112111  2223334 443  44566666   4        334444443  


Q ss_pred             HhcCCCCeEEEEEEeCC
Q 044972           79 GMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~   95 (307)
                       -...|||++++|-++.
T Consensus        76 -tyyrgthgv~vVYDVT   91 (198)
T KOG0079|consen   76 -TYYRGTHGVIVVYDVT   91 (198)
T ss_pred             -HHccCCceEEEEEECc
Confidence             3467999999999875

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.31  E-value=2.5  Score=46.50  Aligned_cols=15  Identities=13%  Similarity=0.020  Sum_probs=13.9

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +||+|||||+++.+|
T Consensus        29 ~G~NGsGKS~ildAi   43 (1164)
T TIGR02169        29 SGPNGSGKSNIGDAI   43 (1164)
T ss_pred             ECCCCCCHHHHHHHH
Confidence            699999999999877

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=95.25  E-value=0.32  Score=46.06  Aligned_cols=19  Identities=16%  Similarity=-0.337  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||+++.|+|--
T Consensus        25 ~G~NGaGKSTLl~~l~Gl~   43 (302)
T TIGR01188        25 LGPNGAGKTTTIRMLTTLL   43 (302)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=95.20  E-value=0.051  Score=53.99  Aligned_cols=16  Identities=19%  Similarity=-0.043  Sum_probs=13.3

Q ss_pred             CCCCCCcHHHHH----HHHH
Q 044972            3 ACEYIKICTTTG----NSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStg----NsIL   18 (307)
                      +|+.+|||||+.    |..+
T Consensus        79 vG~vDSGKSTLt~~LaN~~l   98 (398)
T COG1341          79 VGPVDSGKSTLTTYLANKLL   98 (398)
T ss_pred             ECCcCcCHHHHHHHHHHHHh
Confidence            699999999976    5555

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=95.19  E-value=0.056  Score=56.93  Aligned_cols=19  Identities=16%  Similarity=-0.144  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus       497 vG~sGsGKSTLlklL~gl~  515 (694)
T TIGR03375       497 IGRIGSGKSTLLKLLLGLY  515 (694)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            7999999999999999975

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=95.16  E-value=0.41  Score=44.68  Aligned_cols=21  Identities=19%  Similarity=-0.143  Sum_probs=18.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~   22 (307)
                      .+|++|+||||+++.|.|.-.
T Consensus        55 liG~NGsGKSTLlk~L~Gl~~   75 (264)
T PRK13546         55 LVGINGSGKSTLSNIIGGSLS   75 (264)
T ss_pred             EECCCCCCHHHHHHHHhCCcC
Confidence            369999999999999999753

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=95.10  E-value=0.0085  Score=59.58  Aligned_cols=55  Identities=15%  Similarity=0.025  Sum_probs=39.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      .+|=||+||||++||+=.+++-.+.+ ..+.|+.-|..+-    =+.|.+||.|   |+--++
T Consensus       312 fiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItL----mkrIfLIDcP---GvVyps  366 (572)
T KOG2423|consen  312 FIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITL----MKRIFLIDCP---GVVYPS  366 (572)
T ss_pred             eecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHH----HhceeEecCC---CccCCC
Confidence            36889999999999999988876643 3456664443322    2589999999   985443

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=95.08  E-value=0.36  Score=46.45  Aligned_cols=20  Identities=15%  Similarity=-0.288  Sum_probs=18.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+++.|.|-..
T Consensus         2 ~G~nGsGKSTLl~~iaGl~~   21 (325)
T TIGR01187         2 LGPSGCGKTTLLRLLAGFEQ   21 (325)
T ss_pred             cCCCCCCHHHHHHHHHCCCC
Confidence            69999999999999999753

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=0.019  Score=53.32  Aligned_cols=22  Identities=14%  Similarity=0.093  Sum_probs=19.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccc
Q 044972            3 ACEYIKICTTTGNSILGRRAFK   24 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~   24 (307)
                      -||.||||||++++|.|....+
T Consensus        36 MGPNGsGKSTLa~~i~G~p~Y~   57 (251)
T COG0396          36 MGPNGSGKSTLAYTIMGHPKYE   57 (251)
T ss_pred             ECCCCCCHHHHHHHHhCCCCce
Confidence            4999999999999999998654

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=95.01  E-value=0.14  Score=52.68  Aligned_cols=21  Identities=10%  Similarity=-0.331  Sum_probs=18.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~   22 (307)
                      .+|++||||||+++.|+|.-.
T Consensus       346 ivG~sGsGKSTLl~ll~g~~~  366 (569)
T PRK10789        346 ICGPTGSGKSTLLSLIQRHFD  366 (569)
T ss_pred             EECCCCCCHHHHHHHHhcccC
Confidence            479999999999999999753

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.00  E-value=0.29  Score=44.18  Aligned_cols=16  Identities=13%  Similarity=-0.145  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +||.|+||||+++.|.
T Consensus        31 vGpNGaGKSTll~~i~   46 (212)
T cd03274          31 VGPNGSGKSNVIDSML   46 (212)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999987

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=94.99  E-value=0.34  Score=47.36  Aligned_cols=22  Identities=14%  Similarity=-0.281  Sum_probs=19.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccc
Q 044972            3 ACEYIKICTTTGNSILGRRAFK   24 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~   24 (307)
                      +|++|+||||+++.|.|-....
T Consensus        38 lGpsGsGKSTLLr~IaGl~~p~   59 (351)
T PRK11432         38 LGPSGCGKTTVLRLVAGLEKPT   59 (351)
T ss_pred             ECCCCCcHHHHHHHHHCCCCCC
Confidence            6999999999999999986543

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=94.98  E-value=0.072  Score=54.69  Aligned_cols=19  Identities=11%  Similarity=-0.242  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus       375 vG~sGsGKSTLl~ll~gl~  393 (582)
T PRK11176        375 VGRSGSGKSTIANLLTRFY  393 (582)
T ss_pred             ECCCCCCHHHHHHHHHhcc
Confidence            7999999999999999975

>PRK00300 gmk guanylate kinase; Provisional

Probab=94.94  E-value=0.017  Score=51.05  Aligned_cols=20  Identities=15%  Similarity=-0.085  Sum_probs=17.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|++||||||+.+.|.+.-
T Consensus        10 i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300         10 LSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             EECCCCCCHHHHHHHHHhhC
Confidence            37999999999999999864

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=94.92  E-value=0.019  Score=48.34  Aligned_cols=49  Identities=16%  Similarity=0.049  Sum_probs=32.0

Q ss_pred             CCCCCCCcHHHHHHHHHCC--CccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972            2 CACEYIKICTTTGNSILGR--RAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP   55 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~--~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP   55 (307)
                      .+|+|||||||+.+.|.+.  ..|..-.  ...|+..  ..+.. +|....+||..
T Consensus         4 i~GpsGsGKstl~~~L~~~~~~~~~~~v--~~tTr~p--~~~e~-~g~~~~~v~~~   54 (137)
T cd00071           4 LSGPSGVGKSTLLKRLLEEFDPNFGFSV--SHTTRKP--RPGEV-DGVDYHFVSKE   54 (137)
T ss_pred             EECCCCCCHHHHHHHHHhcCCccceecc--cccccCC--CCCcc-CCceeEEeCHH
Confidence            4799999999999999986  2332211  1123222  12345 88888888866

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=94.88  E-value=0.16  Score=52.40  Aligned_cols=19  Identities=11%  Similarity=-0.076  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|+|.-
T Consensus       373 vG~SGsGKSTLl~lL~gl~  391 (592)
T PRK10790        373 VGHTGSGKSTLASLLMGYY  391 (592)
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            6999999999999999964

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.72  E-value=0.016  Score=50.97  Aligned_cols=18  Identities=22%  Similarity=-0.127  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+|||||||++++|+|.
T Consensus        31 ~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          31 SGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999985

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.72  E-value=0.22  Score=56.50  Aligned_cols=21  Identities=14%  Similarity=-0.086  Sum_probs=18.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCcc
Q 044972            3 ACEYIKICTTTGNSILGRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F   23 (307)
                      +|++|+||||++.+|||.=.-
T Consensus       553 vG~vGsGKSSLL~AiLGEm~~  573 (1381)
T KOG0054|consen  553 VGPVGSGKSSLLSAILGEMPK  573 (1381)
T ss_pred             ECCCCCCHHHHHHHHhcCccc
Confidence            799999999999999998543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.67  E-value=0.12  Score=53.26  Aligned_cols=19  Identities=21%  Similarity=-0.090  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||++|.|+|.-
T Consensus       382 vG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        382 VGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            7999999999999999964

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.65  E-value=0.017  Score=51.60  Aligned_cols=19  Identities=11%  Similarity=-0.155  Sum_probs=17.2

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|+|||||||++++|++.
T Consensus         6 I~GptGSGKTTll~~ll~~   24 (198)
T cd01131           6 VTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3799999999999999875

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=0.095  Score=58.58  Aligned_cols=128  Identities=18%  Similarity=0.229  Sum_probs=72.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccc--cC----CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHH-HHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSK--VG----SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV-SKEIV   75 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~--~s----~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i-~~eI~   75 (307)
                      +|+||+||||++.. .|.+ |.-.  ..    ...+|..|.    -| -+..-++|||-   |=+-+..+..+. ..+=.
T Consensus       131 iG~pgsGKTtal~~-sgl~-Fpl~~~~~~~~~~~~gT~~cd----ww-f~deaVlIDta---Gry~~q~s~~~~~~~~W~  200 (1188)
T COG3523         131 IGPPGSGKTTALLN-SGLQ-FPLAEQMGALGLAGPGTRNCD----WW-FTDEAVLIDTA---GRYITQDSADEVDRAEWL  200 (1188)
T ss_pred             ecCCCCCcchHHhc-cccc-CcchhhhccccccCCCCcccC----cc-cccceEEEcCC---cceecccCcchhhHHHHH
Confidence            69999999998742 2322 2110  00    123377775    24 56688999999   866443322221 11211


Q ss_pred             ---HHHH--hcCCCCeEEEEEEeCCC--CCCHHHHH----HHHH-HHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhc
Q 044972           76 ---KCIG--MAKDGIHAVLIVFSVRN--RFSEEEGA----AIHS-LESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYL  142 (307)
Q Consensus        76 ---kcv~--ls~pGpha~LLVl~~~~--RfT~ee~~----~l~~-i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl  142 (307)
                         ..+.  -....++.|++.+++..  .-+..++.    .|+. |+++-+. .+.-.+.|+||+.|.+.+    +++|.
T Consensus       201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G----F~efF  276 (1188)
T COG3523         201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG----FEEFF  276 (1188)
T ss_pred             HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc----HHHHH
Confidence               1111  12346899999998752  33344431    1222 3333322 356689999999999987    67777


Q ss_pred             CC
Q 044972          143 GP  144 (307)
Q Consensus       143 ~~  144 (307)
                      ..
T Consensus       277 ~~  278 (1188)
T COG3523         277 GS  278 (1188)
T ss_pred             hc
Confidence            64

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=94.59  E-value=0.26  Score=50.11  Aligned_cols=100  Identities=21%  Similarity=0.149  Sum_probs=56.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe-----------EEEEEe-CCCCCCCCC--------
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ-----------VVNVID-TPAIARLFD--------   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr-----------~v~VID-TP~~~Gl~D--------   62 (307)
                      +|++||||||++|.|+|--.-.+             +...+ +|.           .|.+|. .|   -||+        
T Consensus       367 vG~SGsGKSTLl~lL~g~~~p~~-------------G~I~i-~g~~i~~~~~~lr~~i~~V~Q~~---~lF~~TI~eNI~  429 (529)
T TIGR02868       367 LGPSGSGKSTLLMLLTGLLDPLQ-------------GEVTL-DGVSVSSLQDELRRRISVFAQDA---HLFDTTVRDNLR  429 (529)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCC-------------cEEEE-CCEEhhhHHHHHHhheEEEccCc---ccccccHHHHHh
Confidence            79999999999999999642211             12234 553           233333 34   4443        


Q ss_pred             ---CCcCHHHHHHHHHHH-----HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972           63 ---SSADFEFVSKEIVKC-----IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        63 ---t~~~~~~i~~eI~kc-----v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf  125 (307)
                         ++.+++++.+-+..+     +..-+.|.|-.+  -.-|..++.-+++.+..-+.++    .+.-|++|
T Consensus       430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i--ge~G~~LSGGQrQRiaiARall----~~~~iliL  494 (529)
T TIGR02868       430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVL--GEGGARLSGGERQRLALARALL----ADAPILLL  494 (529)
T ss_pred             ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchh--ccccCcCCHHHHHHHHHHHHHh----cCCCEEEE
Confidence               233444444332221     111234555543  2234579999999988888874    34455665

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=94.57  E-value=0.15  Score=43.35  Aligned_cols=106  Identities=17%  Similarity=0.046  Sum_probs=53.4

Q ss_pred             CCCCCCcHHHHHHHH------HCCCccccccCCC--CCCce--eEE----EEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSI------LGRRAFKSKVGSS--EDTKT--CEM----QRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsI------LG~~~F~s~~s~~--svT~~--c~~----~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      .+..|+||||+.-.|      .|.++-.....+.  +.+..  ...    ....+..+ .++|||||   +-.+.     
T Consensus         6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-d~viiD~p---~~~~~-----   76 (179)
T cd02036           6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAG-DYILIDSP---AGIER-----   76 (179)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccC-CEEEEECC---CCCcH-----
Confidence            478999999987544      3555433322221  11110  000    00011022 79999999   65431     


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                      ..    ...+    ...|.+|+|+..+ ..+-... .+++.+..    .-.....||+|+.+.
T Consensus        77 ~~----~~~l----~~ad~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~~iv~N~~~~  126 (179)
T cd02036          77 GF----ITAI----APADEALLVTTPE-ISSLRDADRVKGLLEA----LGIKVVGVIVNRVRP  126 (179)
T ss_pred             HH----HHHH----HhCCcEEEEeCCC-cchHHHHHHHHHHHHH----cCCceEEEEEeCCcc
Confidence            11    1112    1356788888765 4444332 23444443    123567788898764

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=94.56  E-value=0.057  Score=47.81  Aligned_cols=21  Identities=10%  Similarity=-0.083  Sum_probs=18.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~   22 (307)
                      .+|++|+||||+++.|.|-..
T Consensus        36 i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          36 IVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             EECCCCCCHHHHHHHHhCcCC
Confidence            369999999999999999753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.50  E-value=0.017  Score=47.46  Aligned_cols=21  Identities=10%  Similarity=-0.235  Sum_probs=18.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCcc
Q 044972            3 ACEYIKICTTTGNSILGRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F   23 (307)
                      +|++|+||||+++.|.|....
T Consensus        17 ~G~nGsGKStLl~~l~g~~~~   37 (137)
T PF00005_consen   17 VGPNGSGKSTLLKALAGLLPP   37 (137)
T ss_dssp             EESTTSSHHHHHHHHTTSSHE
T ss_pred             EccCCCccccceeeecccccc
Confidence            699999999999999998654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=94.50  E-value=0.15  Score=53.87  Aligned_cols=19  Identities=5%  Similarity=-0.338  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||++|.|+|.-
T Consensus       489 vG~sGsGKSTL~~ll~g~~  507 (694)
T TIGR01846       489 VGPSGSGKSTLTKLLQRLY  507 (694)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999975

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=94.50  E-value=0.016  Score=46.48  Aligned_cols=17  Identities=6%  Similarity=-0.216  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+|||||||+++.|..
T Consensus         5 ~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    5 SGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998854

...

>TIGR03263 guanyl_kin guanylate kinase

Probab=94.40  E-value=0.019  Score=49.47  Aligned_cols=50  Identities=12%  Similarity=-0.080  Sum_probs=30.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP   55 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP   55 (307)
                      .+|++||||||+++.|.+...... . ..+.|+.. ...+.. +|..+.+++++
T Consensus         6 l~G~~GsGKsTl~~~L~~~~~~~~-~-~~~~~tr~-~~~g~~-~~~~~~~~~~~   55 (180)
T TIGR03263         6 ISGPSGVGKSTLVKALLEEDPNLK-F-SISATTRK-PRPGEV-DGVDYFFVSKE   55 (180)
T ss_pred             EECCCCCCHHHHHHHHHccCcccc-c-cccceeeC-CCCCCc-CCcEEEEecHH
Confidence            369999999999999998642211 1 11222211 112345 77777788776

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=94.38  E-value=0.19  Score=44.98  Aligned_cols=18  Identities=11%  Similarity=-0.210  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+.|+||||++++|.|.
T Consensus        31 tGpNg~GKSTllr~i~~~   48 (199)
T cd03283          31 TGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             ECCCCCChHHHHHHHHHH
Confidence            699999999999999763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=94.37  E-value=0.24  Score=42.56  Aligned_cols=109  Identities=14%  Similarity=-0.022  Sum_probs=57.5

Q ss_pred             CCCCCCCcHHHHHHHH------HCCCccccccCCCCCCc-eeEE------------EEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSI------LGRRAFKSKVGSSEDTK-TCEM------------QRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         2 ~~~~tGsGKSStgNsI------LG~~~F~s~~s~~svT~-~c~~------------~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +.+..|+||||+.-.|      .|.++..........+. ....            ..... ++..++|||||   +..+
T Consensus         5 ~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~-~~yD~VIiD~p---p~~~   80 (169)
T cd02037           5 MSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDW-GELDYLVIDMP---PGTG   80 (169)
T ss_pred             ecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhc-CCCCEEEEeCC---CCCc
Confidence            4688999999966433      46666433322222110 0000            00011 46789999999   5432


Q ss_pred             CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCC
Q 044972           63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDE  130 (307)
Q Consensus        63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~  130 (307)
                          +..+  .+.     .....|.+|+|+..+ .++-.+ ..+++.+.+.    -.+..-||+++.+.
T Consensus        81 ----~~~~--~~~-----~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~  133 (169)
T cd02037          81 ----DEHL--TLA-----QSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV----NIPILGVVENMSYF  133 (169)
T ss_pred             ----HHHH--HHH-----hccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc----CCCeEEEEEcCCcc
Confidence                1111  111     013458899998776 555544 3344444443    23455677887764

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.37  E-value=0.81  Score=41.54  Aligned_cols=75  Identities=15%  Similarity=0.136  Sum_probs=48.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE--EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE--MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~--~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .|.+|||||.++-....+. |.+.+.   .|-...  .....+ +++  .|.|.||.   |--        --+.|.+. 
T Consensus        12 iGd~gVGKSclllrf~~kr-F~~~hd---~TiGvefg~r~~~i-d~k~IKlqiwDta---Gqe--------~frsv~~s-   74 (216)
T KOG0098|consen   12 IGDTGVGKSCLLLRFTDKR-FQPVHD---LTIGVEFGARMVTI-DGKQIKLQIWDTA---GQE--------SFRSVTRS-   74 (216)
T ss_pred             ECCCCccHHHHHHHHhccC-cccccc---ceeeeeeceeEEEE-cCceEEEEEEecC---CcH--------HHHHHHHH-
Confidence            5999999999998887764 876543   232222  223355 776  56789999   741        12233332 


Q ss_pred             HhcCCCCeEEEEEEeCCC
Q 044972           79 GMAKDGIHAVLIVFSVRN   96 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~   96 (307)
                        .+.|.-..|||.++++
T Consensus        75 --yYr~a~GalLVydit~   90 (216)
T KOG0098|consen   75 --YYRGAAGALLVYDITR   90 (216)
T ss_pred             --HhccCcceEEEEEccc
Confidence              2457778899999873

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=94.36  E-value=0.13  Score=53.14  Aligned_cols=20  Identities=10%  Similarity=-0.361  Sum_probs=18.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+++.|+|.-.
T Consensus       367 vG~sGsGKSTLl~lL~gl~~  386 (588)
T PRK13657        367 VGPTGAGKSTLINLLQRVFD  386 (588)
T ss_pred             ECCCCCCHHHHHHHHhcCcC
Confidence            79999999999999999753

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=94.34  E-value=0.015  Score=52.60  Aligned_cols=20  Identities=20%  Similarity=-0.174  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+.|.|-|-..
T Consensus        31 ~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          31 LGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             ECCCCccHHHHHHHHHhccC
Confidence            69999999999999999653

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=94.30  E-value=0.67  Score=48.10  Aligned_cols=19  Identities=21%  Similarity=-0.114  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||+++.|.|.-
T Consensus        56 iGpNGSGKSTLLkiLaGLl   74 (549)
T PRK13545         56 IGLNGSGKSTLSNLIAGVT   74 (549)
T ss_pred             EcCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=94.24  E-value=0.82  Score=40.94  Aligned_cols=20  Identities=15%  Similarity=-0.099  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHH----CCCc
Q 044972            3 ACEYIKICTTTGNSIL----GRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL----G~~~   22 (307)
                      .|+.|+||||+...|.    |...
T Consensus        28 ~G~NGsGKTTLl~ai~~~l~G~~~   51 (204)
T cd03240          28 VGQNGAGKTTIIEALKYALTGELP   51 (204)
T ss_pred             ECCCCCCHHHHHHHHHHHHcCCCC
Confidence            5999999999999983    7653

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=94.21  E-value=0.019  Score=51.61  Aligned_cols=48  Identities=13%  Similarity=0.007  Sum_probs=34.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP   55 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP   55 (307)
                      .||+||||||+...++-...|....   |.|+. ....+++ +|....+|+.-
T Consensus        10 sgPSG~GKsTl~k~L~~~~~l~~SV---S~TTR-~pR~gEv-~G~dY~Fvs~~   57 (191)
T COG0194          10 SGPSGVGKSTLVKALLEDDKLRFSV---SATTR-KPRPGEV-DGVDYFFVTEE   57 (191)
T ss_pred             ECCCCCCHHHHHHHHHhhcCeEEEE---EeccC-CCCCCCc-CCceeEeCCHH
Confidence            5999999999999999887544322   33332 2334678 99998888754

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=94.16  E-value=1.1  Score=39.29  Aligned_cols=22  Identities=23%  Similarity=0.086  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHH---HCCCccc
Q 044972            3 ACEYIKICTTTGNSI---LGRRAFK   24 (307)
Q Consensus         3 ~~~tGsGKSStgNsI---LG~~~F~   24 (307)
                      +|+.|+|||++.-+|   +|.+.|.
T Consensus        28 ~G~NGsGKSnil~Ai~~~~~~~~~~   52 (178)
T cd03239          28 VGPNGSGKSNIVDAICFVLGGKAAK   52 (178)
T ss_pred             ECCCCCCHHHHHHHHHHHcCccccc
Confidence            699999999999988   3444443

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=94.14  E-value=0.26  Score=56.64  Aligned_cols=44  Identities=11%  Similarity=-0.024  Sum_probs=30.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      .+|++||||||++++|+|.-...++             ...+ +|.--.|-..|   .+|+
T Consensus       457 I~G~~GsGKSTLl~~l~G~~~~~~G-------------~i~~-~g~iayv~Q~~---~l~~  500 (1490)
T TIGR01271       457 VAGSTGSGKSSLLMMIMGELEPSEG-------------KIKH-SGRISFSPQTS---WIMP  500 (1490)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc-------------eEEE-CCEEEEEeCCC---ccCC
Confidence            3699999999999999997532221             2234 66555666777   5554

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=94.09  E-value=0.057  Score=50.51  Aligned_cols=23  Identities=17%  Similarity=-0.084  Sum_probs=20.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKS   25 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s   25 (307)
                      +|++||||||+++.|+|-....+
T Consensus        39 vGeSGsGKSTL~r~l~Gl~~p~~   61 (252)
T COG1124          39 VGESGSGKSTLARLLAGLEKPSS   61 (252)
T ss_pred             EcCCCCCHHHHHHHHhcccCCCC
Confidence            79999999999999999876543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=94.04  E-value=0.63  Score=47.34  Aligned_cols=19  Identities=16%  Similarity=-0.249  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        43 iG~NGsGKSTLl~~l~Gl~   61 (510)
T PRK15439         43 LGGNGAGKSTLMKIIAGIV   61 (510)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=94.03  E-value=0.1  Score=51.15  Aligned_cols=18  Identities=22%  Similarity=-0.127  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|-|||||+||+|++++.
T Consensus       179 sGGTGSGKTTlLNal~~~  196 (355)
T COG4962         179 SGGTGSGKTTLLNALSGF  196 (355)
T ss_pred             eCCCCCCHHHHHHHHHhc
Confidence            699999999999999985

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.01  E-value=12  Score=41.59  Aligned_cols=25  Identities=16%  Similarity=0.031  Sum_probs=19.1

Q ss_pred             CCCCCCCcHHHHHHHH---HCCCccccc
Q 044972            2 CACEYIKICTTTGNSI---LGRRAFKSK   26 (307)
Q Consensus         2 ~~~~tGsGKSStgNsI---LG~~~F~s~   26 (307)
                      -+|+.||||||++=.|   ||.++..+.
T Consensus        67 I~G~NGSGKSAIltAl~lglG~rAs~tn   94 (1074)
T KOG0250|consen   67 IVGNNGSGKSAILTALTLGLGGRASATN   94 (1074)
T ss_pred             eecCCCCcHHHHHHHHHHhhcccccccc
Confidence            3799999999988555   677766544

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.00  E-value=0.77  Score=40.03  Aligned_cols=119  Identities=16%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             CCCCCCCcHHHHHHHH-HCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSI-LGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsI-LG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      |.|=+++||+|+.--+ ||+.+-.      ..|..-.....++ ..-.++|-|--   |-.           .|...-.-
T Consensus        22 mlGLd~aGKTtiLyKLkl~~~~~~------ipTvGFnvetVty-kN~kfNvwdvG---Gqd-----------~iRplWrh   80 (180)
T KOG0071|consen   22 MLGLDAAGKTTILYKLKLGQSVTT------IPTVGFNVETVTY-KNVKFNVWDVG---GQD-----------KIRPLWRH   80 (180)
T ss_pred             EEecccCCceehhhHHhcCCCccc------ccccceeEEEEEe-eeeEEeeeecc---Cch-----------hhhHHHHh
Confidence            7899999999877544 3433211      1133334445556 67788888888   632           24444455


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe-EEEEEecCCCCCCC--cccHHHhcC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY-MIVVFTRGDELEDN--DETLEDYLG  143 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~-~IVLfT~~D~L~~~--~~sie~yl~  143 (307)
                      ..+|..+++||++...| .. -..+-..+..+.++.-+.. .++|+....++.+.  .+.|.+|+.
T Consensus        81 Yy~gtqglIFV~Dsa~~-dr-~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le  144 (180)
T KOG0071|consen   81 YYTGTQGLIFVVDSADR-DR-IEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE  144 (180)
T ss_pred             hccCCceEEEEEeccch-hh-HHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence            67999999999986534 22 2223345666777766654 44556666666553  234556653

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=93.96  E-value=0.16  Score=53.52  Aligned_cols=20  Identities=10%  Similarity=-0.175  Sum_probs=18.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|++||||||+++.|+|--
T Consensus       510 IvG~sGsGKSTLlklL~gl~  529 (710)
T TIGR03796       510 LVGGSGSGKSTIAKLVAGLY  529 (710)
T ss_pred             EECCCCCCHHHHHHHHhcCC
Confidence            37999999999999999964

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=93.93  E-value=0.096  Score=51.28  Aligned_cols=21  Identities=14%  Similarity=-0.217  Sum_probs=18.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~   22 (307)
                      -||-|||||||+.|+|....+
T Consensus        25 IVGlPNvGKST~fnalT~~~a   45 (391)
T KOG1491|consen   25 IVGLPNVGKSTFFNALTKSKA   45 (391)
T ss_pred             EeeCCCCchHHHHHHHhcCCC
Confidence            489999999999999987664

>PRK14737 gmk guanylate kinase; Provisional

Probab=93.91  E-value=0.036  Score=49.30  Aligned_cols=48  Identities=13%  Similarity=-0.045  Sum_probs=33.0

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP   55 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP   55 (307)
                      +||+||||||+.+.++... .|.   .+.+.|+... ..+++ +|....+|+..
T Consensus        10 ~GpsG~GK~tl~~~l~~~~~~~~---~~v~~TTR~~-r~gE~-~G~dY~fvs~~   58 (186)
T PRK14737         10 SSVAGGGKSTIIQALLEEHPDFL---FSISCTTRAP-RPGDE-EGKTYFFLTIE   58 (186)
T ss_pred             ECCCCCCHHHHHHHHHhcCCccc---cccCccCCCC-CCCCC-CCceeEeCCHH
Confidence            6999999999999999764 121   2234454432 34566 88888888666

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=93.89  E-value=12  Score=41.05  Aligned_cols=20  Identities=10%  Similarity=-0.002  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHH---HHCCCc
Q 044972            3 ACEYIKICTTTGNS---ILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNs---ILG~~~   22 (307)
                      +||+|||||+++.+   +||...
T Consensus        29 ~G~NGsGKS~ll~ai~~~lg~~~   51 (1179)
T TIGR02168        29 VGPNGCGKSNIVDAIRWVLGEQS   51 (1179)
T ss_pred             ECCCCCChhHHHHHHHHHHcCCc
Confidence            79999999999966   677543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=93.87  E-value=0.051  Score=49.25  Aligned_cols=112  Identities=20%  Similarity=0.097  Sum_probs=62.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      ||..++||++++-+..-. .|.....+ .|. +--.....+ + |++|.+       ||+||.. .++..+ + +  -++
T Consensus        10 VGDga~GKT~ll~~~t~~-~fp~~yvP-TVF-dnys~~v~V-~dg~~v~L-------~LwDTAG-qedYDr-l-R--pls   73 (198)
T KOG0393|consen   10 VGDGAVGKTCLLISYTTN-AFPEEYVP-TVF-DNYSANVTV-DDGKPVEL-------GLWDTAG-QEDYDR-L-R--PLS   73 (198)
T ss_pred             ECCCCcCceEEEEEeccC-cCcccccC-eEE-ccceEEEEe-cCCCEEEE-------eeeecCC-Cccccc-c-c--ccC
Confidence            799999999987544322 55443322 111 111223455 5 776542       4444432 122212 1 1  368


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +|..|+||+++++.++.|=+.-  .-+-.++..+   ---.+|+|.|+.|...+
T Consensus        74 Y~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d  124 (198)
T KOG0393|consen   74 YPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDD  124 (198)
T ss_pred             CCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhC
Confidence            9999999999999855544431  1222333332   23468999999987643

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=93.82  E-value=0.037  Score=43.37  Aligned_cols=18  Identities=11%  Similarity=-0.193  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||+|||+++..|++.
T Consensus         8 ~G~~G~GKTtl~~~l~~~   25 (148)
T smart00382        8 VGPPGSGKTTLARALARE   25 (148)
T ss_pred             ECCCCCcHHHHHHHHHhc
Confidence            699999999999999875

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=93.78  E-value=0.95  Score=44.44  Aligned_cols=20  Identities=20%  Similarity=-0.223  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+++.|.|-..
T Consensus        37 lGpsGsGKSTLLr~iaGl~~   56 (362)
T TIGR03258        37 IGKSGCGKTTLLRAIAGFVK   56 (362)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=93.77  E-value=0.16  Score=51.88  Aligned_cols=19  Identities=16%  Similarity=-0.317  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|+|.-
T Consensus       364 vG~sGsGKSTLl~lL~gl~  382 (571)
T TIGR02203       364 VGRSGSGKSTLVNLIPRFY  382 (571)
T ss_pred             ECCCCCCHHHHHHHHHhcc
Confidence            6999999999999999975

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.71  E-value=0.33  Score=44.58  Aligned_cols=93  Identities=19%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             CCCCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCCeEE--EEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972            1 SCACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDGQVV--NVIDTPAIARLFDSSADFEFVSKEIVK   76 (307)
Q Consensus         1 ~~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~Gr~v--~VIDTP~~~Gl~Dt~~~~~~i~~eI~k   76 (307)
                      +|.|.+|||||-+.-... ++.|.-.  +. .|-.+  ......+ +|+.|  -+-||.   |-            |--+
T Consensus        18 VliGDS~VGKsnLlsRft-rnEF~~~--Sk-sTIGvef~t~t~~v-d~k~vkaqIWDTA---GQ------------ERyr   77 (222)
T KOG0087|consen   18 VLIGDSAVGKSNLLSRFT-RNEFSLE--SK-STIGVEFATRTVNV-DGKTVKAQIWDTA---GQ------------ERYR   77 (222)
T ss_pred             EEeCCCccchhHHHHHhc-ccccCcc--cc-cceeEEEEeeceee-cCcEEEEeeeccc---ch------------hhhc
Confidence            378999999998886554 4556422  11 13333  3444566 88755  466888   63            2333


Q ss_pred             HHH-hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Q 044972           77 CIG-MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK  115 (307)
Q Consensus        77 cv~-ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~  115 (307)
                      ++. ..+.|.++.|||.++..+-|=+  .+-+||.++-..
T Consensus        78 AitSaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdh  115 (222)
T KOG0087|consen   78 AITSAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDH  115 (222)
T ss_pred             cccchhhcccceeEEEEechhHHHHH--HHHHHHHHHHhc
Confidence            333 3457999999999986455444  666777776443

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=93.69  E-value=0.27  Score=45.92  Aligned_cols=113  Identities=11%  Similarity=0.033  Sum_probs=61.0

Q ss_pred             CCCCCCcHHHHH----HHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTG----NSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStg----NsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .||||+||++++    +.|+|.........  .....|..-...  ....+..+.-.   +....+.. .+..+++.+..
T Consensus        30 ~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~--~~~~~~~~~~~~--~~~d~lel~~s---~~~~~~i~-~~~vr~~~~~~  101 (325)
T COG0470          30 YGPPGVGKTTAALALAKELLCENPTGLLPC--GHCRSCKLIPAG--NHPDFLELNPS---DLRKIDII-VEQVRELAEFL  101 (325)
T ss_pred             eCCCCCCHHHHHHHHHHHHhCCCcccCCcc--cchhhhhHHhhc--CCCceEEeccc---ccCCCcch-HHHHHHHHHHh
Confidence            699999999987    45555554332211  111222221111  12355556555   44443322 23334444444


Q ss_pred             Hhc-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEec
Q 044972           79 GMA-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTR  127 (307)
Q Consensus        79 ~ls-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~  127 (307)
                      ... ..|+.-++++-+++ .+|..-..++....+.   .--+..+|++|+
T Consensus       102 ~~~~~~~~~kviiidead-~mt~~A~nallk~lEe---p~~~~~~il~~n  147 (325)
T COG0470         102 SESPLEGGYKVVIIDEAD-KLTEDAANALLKTLEE---PPKNTRFILITN  147 (325)
T ss_pred             ccCCCCCCceEEEeCcHH-HHhHHHHHHHHHHhcc---CCCCeEEEEEcC
Confidence            333 24778888888898 9999777776666553   234455555554

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.66  E-value=0.039  Score=51.02  Aligned_cols=19  Identities=16%  Similarity=-0.233  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +||+||||||+.|.|-|-.
T Consensus        37 ~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          37 VGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            6999999999999887765

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.64  E-value=0.039  Score=49.92  Aligned_cols=19  Identities=16%  Similarity=-0.214  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||++|.|.|--
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          32 IGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.62  E-value=0.045  Score=40.63  Aligned_cols=15  Identities=13%  Similarity=-0.206  Sum_probs=13.6

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      .|++||||||++..|
T Consensus        29 ~G~nGsGKSTllDAi   43 (62)
T PF13555_consen   29 TGPNGSGKSTLLDAI   43 (62)
T ss_pred             ECCCCCCHHHHHHHH
Confidence            699999999999776

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=93.61  E-value=0.033  Score=48.11  Aligned_cols=19  Identities=11%  Similarity=-0.298  Sum_probs=16.8

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      ++|++||||||+++.|.+.
T Consensus         6 i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         6 VVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            5799999999999988664

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=93.60  E-value=1.1  Score=44.33  Aligned_cols=21  Identities=10%  Similarity=-0.295  Sum_probs=18.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~   22 (307)
                      ..|++|+||||+++.|.|-..
T Consensus        50 llGpsGsGKSTLLr~IaGl~~   70 (377)
T PRK11607         50 LLGASGCGKSTLLRMLAGFEQ   70 (377)
T ss_pred             EECCCCCcHHHHHHHHhCCCC
Confidence            369999999999999999764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.58  E-value=0.048  Score=48.39  Aligned_cols=19  Identities=11%  Similarity=-0.295  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          33 VGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.56  E-value=0.042  Score=48.09  Aligned_cols=19  Identities=11%  Similarity=-0.342  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        24 ~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        24 LGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=93.52  E-value=0.041  Score=49.08  Aligned_cols=20  Identities=20%  Similarity=-0.137  Sum_probs=18.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|++|+||||+++.|.|--
T Consensus        34 i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        34 LVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            36999999999999999964

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=93.48  E-value=0.044  Score=48.91  Aligned_cols=19  Identities=16%  Similarity=-0.228  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|--
T Consensus        36 ~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          36 VGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EcCCCCCHHHHHHHHhCCc
Confidence            6999999999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=93.47  E-value=0.043  Score=48.81  Aligned_cols=19  Identities=16%  Similarity=-0.197  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|.-
T Consensus        34 ~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        34 TGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PLN03232 ABC transporter C family member; Provisional

Probab=93.46  E-value=0.51  Score=54.41  Aligned_cols=20  Identities=15%  Similarity=-0.041  Sum_probs=18.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||+++.|+|.-.
T Consensus       649 vG~sGSGKSTLl~lLlG~~~  668 (1495)
T PLN03232        649 VGGTGEGKTSLISAMLGELS  668 (1495)
T ss_pred             ECCCCCcHHHHHHHHhCCCc
Confidence            79999999999999999754

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.45  E-value=0.041  Score=49.44  Aligned_cols=19  Identities=5%  Similarity=-0.459  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          32 IGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             ECCCCCCHHHHHHHHHhhc
Confidence            6999999999999999974

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=93.44  E-value=0.043  Score=49.14  Aligned_cols=19  Identities=16%  Similarity=-0.251  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|-.
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          36 VGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03130 ABC transporter C family member; Provisional

Probab=93.43  E-value=0.25  Score=57.37  Aligned_cols=20  Identities=15%  Similarity=-0.037  Sum_probs=18.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||+++.|+|.-.
T Consensus       649 vG~sGSGKSTLl~lLlG~~~  668 (1622)
T PLN03130        649 VGSTGEGKTSLISAMLGELP  668 (1622)
T ss_pred             ECCCCCCHHHHHHHHHHhhc
Confidence            79999999999999999753

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=93.42  E-value=0.34  Score=43.05  Aligned_cols=75  Identities=15%  Similarity=0.155  Sum_probs=47.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCc--eeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTK--TCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~--~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .|++||||||++-+.... .|.-.   .++|-  +-......+ +|.  .+.+-||.   |--            --+.+
T Consensus        17 IGeSGVGKSSLllrFv~~-~fd~~---~~~tIGvDFkvk~m~v-dg~~~KlaiWDTA---GqE------------rFRtL   76 (209)
T KOG0080|consen   17 IGESGVGKSSLLLRFVSN-TFDDL---HPTTIGVDFKVKVMQV-DGKRLKLAIWDTA---GQE------------RFRTL   76 (209)
T ss_pred             EccCCccHHHHHHHHHhc-ccCcc---CCceeeeeEEEEEEEE-cCceEEEEEEecc---chH------------hhhcc
Confidence            599999999999877654 36432   23332  233444556 775  78899999   731            11112


Q ss_pred             Hh-cCCCCeEEEEEEeCCCC
Q 044972           79 GM-AKDGIHAVLIVFSVRNR   97 (307)
Q Consensus        79 ~l-s~pGpha~LLVl~~~~R   97 (307)
                      .. .+.|...+++|-++..|
T Consensus        77 TpSyyRgaqGiIlVYDVT~R   96 (209)
T KOG0080|consen   77 TPSYYRGAQGIILVYDVTSR   96 (209)
T ss_pred             CHhHhccCceeEEEEEccch
Confidence            11 24588999999988643

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=93.42  E-value=0.046  Score=48.24  Aligned_cols=19  Identities=21%  Similarity=-0.331  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|.-
T Consensus        30 ~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        30 IGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.41  E-value=0.045  Score=49.06  Aligned_cols=20  Identities=15%  Similarity=-0.336  Sum_probs=18.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|+.||||||+++.|.|--
T Consensus        31 i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          31 LLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999974

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=93.39  E-value=0.038  Score=48.68  Aligned_cols=18  Identities=22%  Similarity=0.004  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.+.
T Consensus         5 ~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           5 AGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999774

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=93.37  E-value=0.046  Score=48.61  Aligned_cols=20  Identities=10%  Similarity=-0.363  Sum_probs=18.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|++|+||||+++.|.|--
T Consensus        30 i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          30 LLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            36999999999999999964

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=93.36  E-value=0.046  Score=47.95  Aligned_cols=20  Identities=5%  Similarity=-0.280  Sum_probs=17.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|++||||||+++.|.+..
T Consensus         7 l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          7 LMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EECCCCCCHHHHHHHHhccC
Confidence            36999999999999997753

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.33  E-value=0.047  Score=48.78  Aligned_cols=19  Identities=21%  Similarity=-0.099  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|-.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          32 LGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999975

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.31  E-value=0.041  Score=52.03  Aligned_cols=19  Identities=32%  Similarity=0.099  Sum_probs=17.9

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      ||++|+||||+|+.|+|-.
T Consensus        45 VGESG~GKSTlgr~i~~L~   63 (268)
T COG4608          45 VGESGCGKSTLGRLILGLE   63 (268)
T ss_pred             EecCCCCHHHHHHHHHcCc
Confidence            7999999999999999975

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.31  E-value=1.4  Score=40.15  Aligned_cols=110  Identities=15%  Similarity=0.074  Sum_probs=60.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccc-cccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFK-SKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~-s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .|..|||||-+.-..-+.. |. +-.+.-+|  +-...+.++ +|+  .|-|-||.   |=       +..    ..-..
T Consensus        15 iGds~VGKtCL~~Rf~~~~-f~e~~~sTIGV--Df~~rt~e~-~gk~iKlQIWDTA---GQ-------ERF----rtit~   76 (205)
T KOG0084|consen   15 IGDSGVGKTCLLLRFKDDT-FTESYISTIGV--DFKIRTVEL-DGKTIKLQIWDTA---GQ-------ERF----RTITS   76 (205)
T ss_pred             ECCCCcChhhhhhhhccCC-cchhhcceeee--EEEEEEeee-cceEEEEEeeecc---cc-------HHH----hhhhH
Confidence            5999999999988776654 43 22221222  233445566 786  57788999   62       111    11123


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCC-eEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFD-YMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~-~~IVLfT~~D~L~  132 (307)
                      ..+.|.|+||||.++..+-|  =..+-.|+.++=..-.-. +.++|=++.|..+
T Consensus        77 syYR~ahGii~vyDiT~~~S--F~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~  128 (205)
T KOG0084|consen   77 SYYRGAHGIIFVYDITKQES--FNNVKRWIQEIDRYASENVPKLLVGNKCDLTE  128 (205)
T ss_pred             hhccCCCeEEEEEEcccHHH--hhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence            34679999999998862110  112223333321111122 4566666666554

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.30  E-value=0.047  Score=49.28  Aligned_cols=21  Identities=14%  Similarity=-0.216  Sum_probs=18.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~   22 (307)
                      .+|++||||||+++.|.|--.
T Consensus        36 l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          36 IIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             EECCCCCCHHHHHHHHhCCCC
Confidence            369999999999999999753

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=93.29  E-value=0.039  Score=45.39  Aligned_cols=19  Identities=11%  Similarity=-0.160  Sum_probs=16.3

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|+|||||||++..+...
T Consensus         4 ~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    4 LCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEESTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3699999999999998743

...

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.29  E-value=0.049  Score=48.64  Aligned_cols=19  Identities=21%  Similarity=-0.130  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|-.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          34 LGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PTZ00099 rab6; Provisional

Probab=93.23  E-value=0.96  Score=39.48  Aligned_cols=78  Identities=19%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             eEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC--CCHHHHHHHHHHHH
Q 044972           36 CEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR--FSEEEGAAIHSLES  111 (307)
Q Consensus        36 c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R--fT~ee~~~l~~i~~  111 (307)
                      +......+ +|  ..+.++|||   |.....    .       .......+.|++|||+++.++  |..- ..-+..+..
T Consensus        17 ~~~~~~~~-~~~~v~l~iwDt~---G~e~~~----~-------~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~   80 (176)
T PTZ00099         17 FLSKTLYL-DEGPVRLQLWDTA---GQERFR----S-------LIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILN   80 (176)
T ss_pred             EEEEEEEE-CCEEEEEEEEECC---ChHHhh----h-------ccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence            33333445 55  477899999   863211    0       112234689999999998743  3222 122333333


Q ss_pred             hhccccCCeEEEEEecCCCC
Q 044972          112 LFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus       112 ~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ..++  -..+|||.|+.|..
T Consensus        81 ~~~~--~~piilVgNK~DL~   98 (176)
T PTZ00099         81 ERGK--DVIIALVGNKTDLG   98 (176)
T ss_pred             hcCC--CCeEEEEEECcccc
Confidence            3332  24578899998854

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=93.22  E-value=0.04  Score=54.05  Aligned_cols=19  Identities=11%  Similarity=-0.186  Sum_probs=17.1

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|+||||||||+++|++.
T Consensus       139 I~GpTGSGKTTtL~aLl~~  157 (358)
T TIGR02524       139 ITGATGSGKSTLLAAIIRE  157 (358)
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3799999999999999874

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.18  E-value=0.05  Score=48.20  Aligned_cols=19  Identities=16%  Similarity=-0.120  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|-.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          32 TGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.16  E-value=0.052  Score=50.79  Aligned_cols=22  Identities=14%  Similarity=-0.321  Sum_probs=19.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCcc
Q 044972            2 CACEYIKICTTTGNSILGRRAF   23 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F   23 (307)
                      -+|++|+||||+.|.|.|-..-
T Consensus        34 ilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          34 ILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             EECCCCCCHHHHHHHHhCCCCC
Confidence            3799999999999999997643

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=93.15  E-value=0.32  Score=38.08  Aligned_cols=15  Identities=20%  Similarity=-0.208  Sum_probs=11.2

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      .+..|+||||+.=.+
T Consensus         6 ~~kgG~Gkst~~~~l   20 (104)
T cd02042           6 NQKGGVGKTTTAVNL   20 (104)
T ss_pred             eCCCCcCHHHHHHHH
Confidence            357899999976444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=93.15  E-value=0.055  Score=46.60  Aligned_cols=17  Identities=12%  Similarity=-0.240  Sum_probs=15.6

Q ss_pred             CCCCCCCcHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSIL   18 (307)
Q Consensus         2 ~~~~tGsGKSStgNsIL   18 (307)
                      .+|+|||||||+++.|.
T Consensus         8 i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         8 IVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            36999999999999997

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=93.14  E-value=0.052  Score=48.20  Aligned_cols=19  Identities=11%  Similarity=-0.274  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|-.
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          33 VGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=93.12  E-value=0.048  Score=52.69  Aligned_cols=18  Identities=17%  Similarity=0.038  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      ||++|||||+|+.+|+|-
T Consensus        37 VGESGsGKS~~~~aim~l   54 (316)
T COG0444          37 VGESGSGKSVLAKAIMGL   54 (316)
T ss_pred             EcCCCCCHHHHHHHHHhc
Confidence            799999999999999994

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=93.09  E-value=0.18  Score=57.86  Aligned_cols=19  Identities=11%  Similarity=-0.225  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      ||++||||||+++.|+|--
T Consensus      1200 VG~SGsGKSTl~~LL~r~y 1218 (1466)
T PTZ00265       1200 VGETGSGKSTVMSLLMRFY 1218 (1466)
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            7999999999999999953

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=93.09  E-value=0.053  Score=49.05  Aligned_cols=19  Identities=11%  Similarity=-0.286  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          33 IGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999974

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=93.07  E-value=0.055  Score=48.99  Aligned_cols=19  Identities=11%  Similarity=-0.267  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|--
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         41 VGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=93.07  E-value=0.44  Score=49.04  Aligned_cols=110  Identities=15%  Similarity=0.073  Sum_probs=51.8

Q ss_pred             CCCCCCcHHHHHHHHH----CCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL----GRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVK   76 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL----G~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~k   76 (307)
                      .|++|+||||++-.|.    .......+.+..++ -.|......- +|.  .+.-+|--       +..+.+++..-+..
T Consensus        49 ~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C-~~C~~C~~i~-~~~h~Dv~eidaa-------s~~~vd~Ir~iie~  119 (507)
T PRK06645         49 TGIRGVGKTTSARIIAKAVNCSALITENTTIKTC-EQCTNCISFN-NHNHPDIIEIDAA-------SKTSVDDIRRIIES  119 (507)
T ss_pred             ECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC-CCChHHHHHh-cCCCCcEEEeecc-------CCCCHHHHHHHHHH
Confidence            6999999999996653    22212111111111 1232111111 343  34444432       12233455443333


Q ss_pred             HHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           77 CIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        77 cv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      +......|..-++++-.++ .+|.....++   .+.+-+ .-.+++++|.
T Consensus       120 a~~~P~~~~~KVvIIDEa~-~Ls~~a~naL---Lk~LEe-pp~~~vfI~a  164 (507)
T PRK06645        120 AEYKPLQGKHKIFIIDEVH-MLSKGAFNAL---LKTLEE-PPPHIIFIFA  164 (507)
T ss_pred             HHhccccCCcEEEEEEChh-hcCHHHHHHH---HHHHhh-cCCCEEEEEE
Confidence            3223223555666666676 8887655443   333332 3456666664

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.05  E-value=0.056  Score=47.94  Aligned_cols=20  Identities=10%  Similarity=-0.404  Sum_probs=18.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|+.|+||||+++.|.|..
T Consensus        31 l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          31 IIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            36999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=93.05  E-value=1.4  Score=40.23  Aligned_cols=18  Identities=28%  Similarity=-0.003  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++|+|||++.+.+++.
T Consensus        49 ~G~~G~GKTtl~~~l~~~   66 (269)
T TIGR03015        49 TGEVGAGKTTLIRNLLKR   66 (269)
T ss_pred             EcCCCCCHHHHHHHHHHh
Confidence            699999999999999765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=93.04  E-value=0.049  Score=49.61  Aligned_cols=18  Identities=17%  Similarity=-0.080  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.+.
T Consensus         5 ~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           5 AGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            699999999999999874

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK13695 putative NTPase; Provisional

Probab=93.03  E-value=0.71  Score=39.85  Aligned_cols=18  Identities=17%  Similarity=-0.389  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++|+||||++..|++.
T Consensus         6 tG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          6 TGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988654

>PTZ00243 ABC transporter; Provisional

Probab=93.00  E-value=0.54  Score=54.44  Aligned_cols=94  Identities=13%  Similarity=0.109  Sum_probs=52.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEE-------------eCCCCCCCCCC-----
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVI-------------DTPAIARLFDS-----   63 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VI-------------DTP~~~Gl~Dt-----   63 (307)
                      .+|+|||||||++|.|+|--.-.+             +...+ ||..+.=+             --|   -||+.     
T Consensus      1341 IVGrTGSGKSTLl~lLlrl~~p~~-------------G~I~I-DG~di~~i~l~~LR~~I~iVpQdp---~LF~gTIreN 1403 (1560)
T PTZ00243       1341 IVGRTGSGKSTLLLTFMRMVEVCG-------------GEIRV-NGREIGAYGLRELRRQFSMIPQDP---VLFDGTVRQN 1403 (1560)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCC-------------cEEEE-CCEEcccCCHHHHHhcceEECCCC---ccccccHHHH
Confidence            379999999999999999632211             12234 55433222             234   45532     


Q ss_pred             -----CcCHHHHHHHHHHH-----HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhc
Q 044972           64 -----SADFEFVSKEIVKC-----IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFG  114 (307)
Q Consensus        64 -----~~~~~~i~~eI~kc-----v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG  114 (307)
                           ..+++++..-+..|     +...+.|.|..+  -.-|..++.-+++.+..-+.+..
T Consensus      1404 Idp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~v--ge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243       1404 VDPFLEASSAEVWAALELVGLRERVASESEGIDSRV--LEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred             hCcccCCCHHHHHHHHHHCCChHHHhhCcccccccc--cCCcCcCCHHHHHHHHHHHHHhc
Confidence                 22344444433332     111233555443  23345799999999888888753

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=92.97  E-value=0.058  Score=47.60  Aligned_cols=19  Identities=16%  Similarity=-0.270  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||+++.|.|.-
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        32 TGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=92.95  E-value=0.22  Score=45.01  Aligned_cols=73  Identities=16%  Similarity=0.120  Sum_probs=46.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccc---cccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFK---SKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~---s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      -|.+|||||||.|.....+-+.   .-.++.=+|+..     .+ +++  .+.+-||.   |=       +.    ....
T Consensus        15 LGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev-----~V-d~~~vtlQiWDTA---GQ-------ER----FqsL   74 (210)
T KOG0394|consen   15 LGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV-----QV-DDRSVTLQIWDTA---GQ-------ER----FQSL   74 (210)
T ss_pred             eCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE-----EE-cCeEEEEEEEecc---cH-------HH----hhhc
Confidence            4899999999999999876332   112222344433     45 666  45578999   62       10    1111


Q ss_pred             HHhcCCCCeEEEEEEeCC
Q 044972           78 IGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~   95 (307)
                      -...+.|.|..+||.+++
T Consensus        75 g~aFYRgaDcCvlvydv~   92 (210)
T KOG0394|consen   75 GVAFYRGADCCVLVYDVN   92 (210)
T ss_pred             ccceecCCceEEEEeecC
Confidence            124567999999999987

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=92.95  E-value=0.06  Score=47.80  Aligned_cols=19  Identities=32%  Similarity=-0.095  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|.-
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          32 LGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=92.94  E-value=0.63  Score=53.76  Aligned_cols=20  Identities=5%  Similarity=-0.178  Sum_probs=18.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||+++.|+|.-.
T Consensus       670 vG~~GsGKSTLl~~l~g~~~  689 (1522)
T TIGR00957       670 VGQVGCGKSSLLSALLAEMD  689 (1522)
T ss_pred             ECCCCCCHHHHHHHHhCCCc
Confidence            79999999999999999743

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.94  E-value=0.056  Score=49.40  Aligned_cols=19  Identities=5%  Similarity=-0.482  Sum_probs=17.4

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|++||||||++|.|.|-
T Consensus        33 i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         33 LIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             EECCCCCCHHHHHHHHhcc
Confidence            3699999999999999995

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=92.93  E-value=0.068  Score=48.02  Aligned_cols=21  Identities=14%  Similarity=-0.315  Sum_probs=18.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCcc
Q 044972            3 ACEYIKICTTTGNSILGRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F   23 (307)
                      +|+.|+||||+++.|.|.-..
T Consensus        35 ~G~nGsGKSTLl~~l~G~~~~   55 (229)
T cd03254          35 VGPTGAGKTTLINLLMRFYDP   55 (229)
T ss_pred             ECCCCCCHHHHHHHHhcCcCC
Confidence            699999999999999997543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=92.93  E-value=0.069  Score=47.35  Aligned_cols=19  Identities=32%  Similarity=-0.073  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|-.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          32 LGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999974

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR00235 udk uridine kinase

Probab=92.92  E-value=0.05  Score=48.53  Aligned_cols=18  Identities=17%  Similarity=-0.095  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        12 ~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235        12 GGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=92.89  E-value=0.38  Score=51.42  Aligned_cols=106  Identities=20%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             CCCcHHHHHHHHHCCCccccccCC--------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972            6 YIKICTTTGNSILGRRAFKSKVGS--------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS   71 (307)
Q Consensus         6 tGsGKSStgNsILG~~~F~s~~s~--------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~   71 (307)
                      .--||+|++.+++..+...|..-+              .+.|......+... .+..+++||+|   |--|-.       
T Consensus        18 vdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidsp---ghvdf~-------   86 (887)
T KOG0467|consen   18 VDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSP---GHVDFS-------   86 (887)
T ss_pred             ecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCC---Cccchh-------
Confidence            346999999999877654332211              13333333333334 77899999999   876632       


Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      .|+..+..+| +|  |++|| ++-...+.+....++   ..+-+  -..+|+|+++.|.|
T Consensus        87 sevssas~l~-d~--alvlv-dvvegv~~qt~~vlr---q~~~~--~~~~~lvinkidrl  137 (887)
T KOG0467|consen   87 SEVSSASRLS-DG--ALVLV-DVVEGVCSQTYAVLR---QAWIE--GLKPILVINKIDRL  137 (887)
T ss_pred             hhhhhhhhhc-CC--cEEEE-eeccccchhHHHHHH---HHHHc--cCceEEEEehhhhH
Confidence            3444443343 23  34444 443356666555555   22111  23689999999943

>PHA02518 ParA-like protein; Provisional

Probab=92.89  E-value=0.3  Score=42.77  Aligned_cols=67  Identities=12%  Similarity=0.067  Sum_probs=34.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHh--hccccCCeE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESL--FGKKVFDYM  121 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~--FG~~~~~~~  121 (307)
                      ++..++|||||   |-.+      .+...+   +    ...|.+|+++..+ .++-.. ..+++.+..+  +.+ ...+.
T Consensus        75 ~~~d~viiD~p---~~~~------~~~~~~---l----~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~~~-~~~~~  136 (211)
T PHA02518         75 SGYDYVVVDGA---PQDS------ELARAA---L----RIADMVLIPVQPS-PFDIWAAPDLVELIKARQEVTD-GLPKF  136 (211)
T ss_pred             ccCCEEEEeCC---CCcc------HHHHHH---H----HHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhhCC-CCceE
Confidence            34589999999   6532      111221   1    2467888887665 444332 2233333332  222 24456


Q ss_pred             EEEEecCC
Q 044972          122 IVVFTRGD  129 (307)
Q Consensus       122 IVLfT~~D  129 (307)
                      .||+++.+
T Consensus       137 ~iv~n~~~  144 (211)
T PHA02518        137 AFIISRAI  144 (211)
T ss_pred             EEEEeccC
Confidence            66777654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=92.88  E-value=0.069  Score=48.42  Aligned_cols=19  Identities=11%  Similarity=-0.398  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|-.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        34 IGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999974

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=92.86  E-value=0.058  Score=48.02  Aligned_cols=19  Identities=21%  Similarity=-0.095  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||+++.|.|.-
T Consensus        31 ~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          31 VGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            6999999999999999974

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=92.84  E-value=0.064  Score=39.81  Aligned_cols=18  Identities=6%  Similarity=-0.147  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|++||||||+++.|...
T Consensus         5 ~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           5 TGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988643

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=92.82  E-value=0.063  Score=48.28  Aligned_cols=20  Identities=15%  Similarity=-0.203  Sum_probs=18.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|+.|+||||+++.|.|-.
T Consensus        41 i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         41 LIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EECCCCCCHHHHHHHHHcCC
Confidence            36999999999999999975

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=92.80  E-value=0.072  Score=47.92  Aligned_cols=19  Identities=16%  Similarity=-0.160  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||+++.|+|-.
T Consensus        19 ~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         19 LAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999975

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=92.78  E-value=0.074  Score=47.32  Aligned_cols=19  Identities=21%  Similarity=-0.261  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          32 LGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=92.77  E-value=0.47  Score=47.23  Aligned_cols=90  Identities=13%  Similarity=0.136  Sum_probs=48.8

Q ss_pred             CCCCCCcHHHHHHH----HHCCCccccccCCCCCCceeEEE-EEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNS----ILGRRAFKSKVGSSEDTKTCEMQ-RTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNs----ILG~~~F~s~~s~~svT~~c~~~-~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      .||+|+||++++-.    +++....   ..+.+....|... .+..   ..+.+|+..   |.   ...-+++. ++.+.
T Consensus        42 ~Gp~G~GKt~lA~~lA~~l~c~~~~---~~~Cg~C~~C~~~~~~~h---pD~~~i~~~---~~---~i~i~~iR-~l~~~  108 (394)
T PRK07940         42 TGPPGSGRSVAARAFAAALQCTDPD---EPGCGECRACRTVLAGTH---PDVRVVAPE---GL---SIGVDEVR-ELVTI  108 (394)
T ss_pred             ECCCCCcHHHHHHHHHHHhCCCCCC---CCCCCCCHHHHHHhcCCC---CCEEEeccc---cc---cCCHHHHH-HHHHH
Confidence            59999999998854    4444321   1111222233221 1111   246666655   52   23445543 55555


Q ss_pred             HHhcC-CCCeEEEEEEeCCCCCCHHHHHHH
Q 044972           78 IGMAK-DGIHAVLIVFSVRNRFSEEEGAAI  106 (307)
Q Consensus        78 v~ls~-pGpha~LLVl~~~~RfT~ee~~~l  106 (307)
                      +...+ .|..-|+++-.++ +++..-.+++
T Consensus       109 ~~~~p~~~~~kViiIDead-~m~~~aanaL  137 (394)
T PRK07940        109 AARRPSTGRWRIVVIEDAD-RLTERAANAL  137 (394)
T ss_pred             HHhCcccCCcEEEEEechh-hcCHHHHHHH
Confidence            54432 3666677888888 9998876543

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=92.75  E-value=0.06  Score=49.26  Aligned_cols=18  Identities=6%  Similarity=-0.457  Sum_probs=17.0

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|-
T Consensus        38 ~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         38 IGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999995

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.75  E-value=0.061  Score=49.13  Aligned_cols=19  Identities=5%  Similarity=-0.466  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|.-
T Consensus        35 ~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         35 MGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            6999999999999999974

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=92.74  E-value=0.044  Score=44.28  Aligned_cols=20  Identities=10%  Similarity=-0.290  Sum_probs=16.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      +.|++|+|||++++.++..-
T Consensus         9 i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    9 ISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             EEE-TTSSHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHh
Confidence            57999999999999998753

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=92.71  E-value=0.065  Score=48.96  Aligned_cols=19  Identities=16%  Similarity=-0.335  Sum_probs=17.3

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|++|+||||+++.|.|-
T Consensus        36 i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         36 LIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             EECCCCCCHHHHHHHHhcc
Confidence            3799999999999999985

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=92.67  E-value=0.06  Score=43.00  Aligned_cols=18  Identities=17%  Similarity=-0.127  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|.|||||||+++.|.-.
T Consensus         4 ~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    4 SGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999887543

...

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=92.66  E-value=0.078  Score=48.19  Aligned_cols=20  Identities=0%  Similarity=-0.468  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+++.|.|...
T Consensus        34 ~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         34 LGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999753

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=92.65  E-value=1.4  Score=45.39  Aligned_cols=19  Identities=11%  Similarity=-0.298  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|.-
T Consensus        39 iG~NGsGKSTLlk~i~G~~   57 (556)
T PRK11819         39 LGLNGAGKSTLLRIMAGVD   57 (556)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.64  E-value=0.6  Score=46.18  Aligned_cols=110  Identities=12%  Similarity=0.048  Sum_probs=53.4

Q ss_pred             CCCCCCcHHHHH----HHHHCCCccccc------cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHH
Q 044972            3 ACEYIKICTTTG----NSILGRRAFKSK------VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSK   72 (307)
Q Consensus         3 ~~~tGsGKSStg----NsILG~~~F~s~------~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~   72 (307)
                      .||+|+||+|++    +.|++.......      ..+.+....|.... .. ..-.+.++|..   +.    ..-+++. 
T Consensus        44 ~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~-~~-~~~n~~~~~~~---~~----~~id~Ir-  113 (397)
T PRK14955         44 SGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD-AG-TSLNISEFDAA---SN----NSVDDIR-  113 (397)
T ss_pred             ECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh-cC-CCCCeEeeccc---cc----CCHHHHH-
Confidence            599999999987    556664322110      11112223332211 01 12345556654   22    1123443 


Q ss_pred             HHHHHHHhcC-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEec
Q 044972           73 EIVKCIGMAK-DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTR  127 (307)
Q Consensus        73 eI~kcv~ls~-pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~  127 (307)
                      ++..-+...+ -+..-+++|-.++ ++|.+....+   .+.+- +.-.+++++|+.
T Consensus       114 ~l~~~~~~~p~~~~~kvvIIdea~-~l~~~~~~~L---Lk~LE-ep~~~t~~Il~t  164 (397)
T PRK14955        114 LLRENVRYGPQKGRYRVYIIDEVH-MLSIAAFNAF---LKTLE-EPPPHAIFIFAT  164 (397)
T ss_pred             HHHHHHhhchhcCCeEEEEEeChh-hCCHHHHHHH---HHHHh-cCCCCeEEEEEe
Confidence            3333333222 2566677777777 9998655443   33322 234566666654

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=92.64  E-value=0.45  Score=48.96  Aligned_cols=19  Identities=16%  Similarity=-0.178  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||++|.|+|.-
T Consensus       374 vG~sGsGKSTl~~ll~g~~  392 (555)
T TIGR01194       374 VGENGCGKSTLAKLFCGLY  392 (555)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK08233 hypothetical protein; Provisional

Probab=92.63  E-value=0.065  Score=45.93  Aligned_cols=18  Identities=17%  Similarity=-0.140  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|.|||||||+++.|.+.
T Consensus         9 ~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          9 AAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999764

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=92.63  E-value=0.066  Score=48.48  Aligned_cols=18  Identities=17%  Similarity=-0.014  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+.|+||||+++.|.|.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        32 MGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999997

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=92.62  E-value=0.077  Score=48.11  Aligned_cols=20  Identities=5%  Similarity=-0.403  Sum_probs=18.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||+++.|.|...
T Consensus        33 ~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        33 LGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             ECCCCCCHHHHHHHHhCCcC
Confidence            69999999999999999753

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=92.61  E-value=0.065  Score=52.40  Aligned_cols=19  Identities=11%  Similarity=-0.078  Sum_probs=17.4

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|+|||||||++|+|++.
T Consensus       167 I~G~tGSGKTTll~aLl~~  185 (344)
T PRK13851        167 LCGPTGSGKTTMSKTLISA  185 (344)
T ss_pred             EECCCCccHHHHHHHHHcc
Confidence            3799999999999999985

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=92.61  E-value=0.081  Score=47.61  Aligned_cols=20  Identities=25%  Similarity=-0.164  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.||||||+++.|.|--.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          32 LGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=92.60  E-value=0.08  Score=47.26  Aligned_cols=20  Identities=10%  Similarity=-0.237  Sum_probs=18.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.|+||||+++.|.|...
T Consensus        36 ~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          36 IGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             ECCCCCCHHHHHHHHhcCcC
Confidence            69999999999999999754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=92.60  E-value=0.079  Score=47.84  Aligned_cols=20  Identities=5%  Similarity=-0.335  Sum_probs=18.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||+++.|.|-..
T Consensus        33 ~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          33 VGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             ECCCCCCHHHHHHHHhcccC
Confidence            69999999999999999754

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=92.60  E-value=0.066  Score=49.43  Aligned_cols=19  Identities=5%  Similarity=-0.456  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|--
T Consensus        45 ~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         45 IGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            6999999999999999963

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=92.59  E-value=3.1  Score=46.90  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=26.5

Q ss_pred             HHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972          107 HSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus       107 ~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ..+..-+|=..-.|.||.       .   +.|..++.- .|..++.+++..-|
T Consensus       125 ~~l~~~~gi~~~~~~iV~-------Q---G~V~~i~~~-kp~err~iiEEaaG  166 (1163)
T COG1196         125 QDLLADSGIGKESYSIVS-------Q---GKVEEIINA-KPEERRKLIEEAAG  166 (1163)
T ss_pred             HHHHHhcCCCCCCCceee-------c---ccHHHHHcC-CHHHHHHHHHHHhc
Confidence            334444555556664432       2   357888876 78888889888655

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=92.58  E-value=0.071  Score=47.84  Aligned_cols=19  Identities=16%  Similarity=-0.258  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|.-
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        32 LGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=92.57  E-value=0.083  Score=47.19  Aligned_cols=20  Identities=10%  Similarity=-0.258  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.|+||||+++.|.|.-.
T Consensus        37 ~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        37 VGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999753

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	307
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		9e-17
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		8e-12
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		4e-11
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		4e-11
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		6e-11
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		1e-10

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILGR+ F S   +   TK CE + +  K+ ++V V+DTP I   FD+       
Sbjct: 43  SATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGI---FDTEVPNAET 98
Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
           SKEI++CI +   G HA+L+V  +  R++EEE  A   +   FG++   + I++FTR   
Sbjct: 99  SKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGERARSFXILIFTRKDD 157
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKTKDA 171
                         E P+ ++++  +  +R    +NK   A
Sbjct: 158 LGDTNLHDYLR---EAPEDIQDLXDIFGDRYCALNNKATGA 195

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILG+R F S++G++  T+ C    +   D   V V+DTP I     S  D    
Sbjct: 35  SATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDIFSSQVSKTDPG-- 91
Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
            +E   C  ++  G HA+L+V  +  RF+ ++  A+  +  +FG+ V  +M++VFTR   
Sbjct: 92  CEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKED 150
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNK 167
                            + L+E++  C  R   FDN+
Sbjct: 151 LAGGSLHDYVSNTEN--RALRELVAECGGRVCAFDNR 185

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           +  GNSIL ++AF+SK+GS   TKTC   +    + ++V +IDTP    +F      E +
Sbjct: 16  SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP---DMFSWKDHCEAL 71
Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
            KE+ +C  ++  G H +L+V  +  R++ ++  A   ++ +FG+    + IV+FT    
Sbjct: 72  YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKED 130
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNK 167
                            K L +++  C  R   F+N+
Sbjct: 131 LNGGSLMDYMHDSDN--KALSKLVAACGGRICAFNNR 165

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           +  GNSIL ++AF+SK+GS   TKTC   +    + ++V +IDTP    +F      E +
Sbjct: 36  SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP---DMFSWKDHCEAL 91
Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
            KE+ +C  ++  G H +L+V  +  R++ ++  A   ++ +FG+    + IV+FT    
Sbjct: 92  YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKED 150
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNKT 168
                            K L +++  C  R   F+N+ 
Sbjct: 151 LNGGSLMDYMHDSDN--KALSKLVAACGGRICAFNNRA 186

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           +  GNSIL ++AF+SK+GS   TKTC   +    + ++V +IDTP    +F      E +
Sbjct: 19  SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP---DMFSWKDHCEAL 74
Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
            KE+ +C  ++  G H +L+V  +  R++ ++  A   ++ +FG+    + IV+FT    
Sbjct: 75  YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKED 133
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNK 167
                            K L +++  C  R   F+N+
Sbjct: 134 LNGGSLMDYMHDSDN--KALSKLVAACGGRICAFNNR 168

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           +  GNSIL ++AF+SK+GS   TKTC   +    + ++V +IDTP     F      E +
Sbjct: 36  SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTP---DXFSWKDHCEAL 91
Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGXX 130
            KE+ +C  ++  G H +L+V  +  R++ ++  A   ++ +FG+    + IV+FT    
Sbjct: 92  YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAXGHTIVLFTHKED 150
Query: 131 XXXXXXXXXXXXGPECPKPLKEILQLCDNRRVLFDNK 167
                            K L +++  C  R   F+N+
Sbjct: 151 LNGGSLXDYXHDSDN--KALSKLVAACGGRICAFNNR 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	307
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	2e-47
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	2e-43
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	5e-42
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-38
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	4e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  159 bits (403), Expect = 2e-47
 Identities = 54/243 (22%), Positives = 108/243 (44%), Gaps = 32/243 (13%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           +  GNSIL ++AF+SK+GS   TKTC   +      + + +IDTP    +F      E +
Sbjct: 36  SAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPD---MFSWKDHCEAL 91

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
            KE+ +C  ++  G H +L+V  +  R++ ++  A   ++ +FG+    + IV+FT  ++
Sbjct: 92  YKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKED 150

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRT-------------EQ 177
           L     +L DY+     K L +++  C  R   F+N+ + + +                +
Sbjct: 151 LN--GGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208

Query: 178 NGGQPYIDEIFAELKKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSYEDQLKRSIEM 237
             G  Y + +++ +++                      + E K+ + K  E Q +    +
Sbjct: 209 KNGDHYTNGLYSLIQRSKCGPVGSD-----------ERVKEFKQSLIKYMETQ-RSYTAL 256

Query: 238 VES 240
            E+
Sbjct: 257 AEA 259

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  147 bits (373), Expect = 2e-43
 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 21/197 (10%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           + TGNSILGR+ F S   +   TK CE + +       + V+DTP    +FD+       
Sbjct: 43  SATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPG---IFDTEVPNAET 98

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
           SKEI++CI +   G HA+L+V  +  R++EEE  A   +  +FG++   +MI++FTR D+
Sbjct: 99  SKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRT-------------EQ 177
           L   D  L DYL  E P+ +++++ +  +R    +NK   A +                +
Sbjct: 158 LG--DTNLHDYLR-EAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214

Query: 178 NGGQPYIDEIFAELKKR 194
           N    Y + ++   ++ 
Sbjct: 215 NKEGCYTNRMYQRAEEE 231

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  135 bits (342), Expect = 2e-38
 Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 18/216 (8%)

Query: 12  TTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS 71
           +T NS++G +  +     +E  +   + RTM   G  +N+IDTP +    ++        
Sbjct: 51  STVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGL---VEAGYVNHQAL 105

Query: 72  KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL 131
           + I   +      +   +    V     E +   + ++   FGK+++   ++V T     
Sbjct: 106 ELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164

Query: 132 EDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDEIFAEL 191
             ++ + E +        LK I      R+  F++          +N G+   ++   + 
Sbjct: 165 PPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVV--YAENSGRCSKNDKDEKA 222

Query: 192 KKRATKLRDQQVEVDSLKGYSKREISELKEQMKKSY 227
                      V+           I+++    +K+ 
Sbjct: 223 LPNGEAWIPNLVK----------AITDVATNQRKAI 248

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  129 bits (326), Expect = 4e-36
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 11/176 (6%)

Query: 12  TTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVS 71
           +T NSI+G R        SE  +   + R+    G  +N+IDTP    L +     +   
Sbjct: 54  STVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG---LIEGGYINDMAL 108

Query: 72  KEIVKCIGMAKDGIHAVLIVFSV-RNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDE 130
             I   +      I  +L V  +   R    +     ++   FGK +++  IV  T    
Sbjct: 109 NIIKSFL--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166

Query: 131 LEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDE 186
              +    +++   +  + L ++++   + +               +N G+   ++
Sbjct: 167 SPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDAQASDIPVVLI--ENSGRCNKND 219

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 3e-10
 Identities = 55/307 (17%), Positives = 100/307 (32%), Gaps = 76/307 (24%)

Query: 32  DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS--ADF--EFVSKEIVKCIGMAKDGIHA 87
           D +T E Q    +   +++V +  A    FD     D     +SKE +  I M+KD +  
Sbjct: 8   DFETGEHQ---YQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 88  VLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECP 147
            L +F                L S   +++    +      + L  N + L   +  E  
Sbjct: 64  TLRLFWT--------------LLS-KQEEMVQKFV-----EEVLRINYKFLMSPIKTEQR 103

Query: 148 KPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYID------EIFAELKKRATKLRDQ 201
           +P        + R  L+             N  Q +        + + +L++   +LR  
Sbjct: 104 QPSMMTRMYIEQRDRLY-------------NDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 202 Q-VEVDSLKGYSKREISELKEQMKKSYEDQLKRS-----IEMVESKLKETTTRLEQQLAE 255
           + V +D + G  K   + +   +  SY+ Q K       + +         T LE     
Sbjct: 151 KNVLIDGVLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKL 205

Query: 256 EHLARLK-AEGAAQLAQIKSNEEIFNLREKLERGQRETEE------LRNGV--PK----- 301
            +         +   + IK      +++ +L R  +          L N V   K     
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAF 262

Query: 302 -LQCPIL 307
            L C IL
Sbjct: 263 NLSCKIL 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 56/364 (15%), Positives = 107/364 (29%), Gaps = 102/364 (28%)

Query: 20  RRAFKSK-----------VGSSEDTKT----CEMQRTML--KDGQVVNVIDTPAIARLFD 62
           RR  KSK           V +++        C   + +L  +  QV + +       +  
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISL 291

Query: 63  SSADFEFVSKE----IVKCIGM--------AKDG-------IHAVLIVFSVR-------- 95
                     E    ++K +                     I   +              
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 96  -NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRG-----------------DELEDNDET 137
            ++ +    ++++ LE    +K+FD  + VF                     ++      
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 138 LEDY-LGPECPKPLK--------EILQLCDNRRVL---FDNKTKDAAKRTEQNGGQPYID 185
           L  Y L  + PK           E+    +N   L     +           +   PY+D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 186 EIF----------AELKKRATKLR---------DQQVEVDSLKGYSKREISELKEQMKKS 226
           + F           E  +R T  R         +Q++  DS    +   I    +Q+K  
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF- 529

Query: 227 YEDQLKRSIEMVESKLKETTTRLEQQLAEEHLARLKAEGAAQLAQIKSNEEIFNLREKLE 286
           Y+  +  +    E  +      L +   EE+L   K     ++A +  +E IF   E  +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPK--IEENLICSKYTDLLRIALMAEDEAIFE--EAHK 585

Query: 287 RGQR 290
           + QR
Sbjct: 586 QVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 54/349 (15%), Positives = 103/349 (29%), Gaps = 95/349 (27%)

Query: 30  SEDTKTCEMQRTML-KDGQVV---NVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGI 85
           S  T+    QR  L  D QV    NV       +L    A  E    + V   G+   G 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVL--GS 161

Query: 86  ------------HAVLIVF-------SVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT 126
                       + V           +++N  S E    +  L+ L  +   ++     +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--VLEMLQKLLYQIDPNWT----S 215

Query: 127 RGD-------ELEDNDETLEDYLGPECPKPLKEILQLCDN---RRVL--FDNK------T 168
           R D        +      L   L     KP +  L +  N    +    F+        T
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 169 KD--------AAKRT-----EQNGG--QPYIDEIFAE-LKKRATKLRDQQVEVD----SL 208
           +         AA  T       +       +  +  + L  R   L  + +  +    S+
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 209 KGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTR-LEQQLA---------EEHL 258
              S R+     +  K    D+L   IE   + L+    R +  +L+            L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 259 ARLKAEGAAQLAQIKSNEEIFNLREKLERG---QRETEELRNGVPKLQC 304
           + +  +            ++  +  KL +    +++ +E    +P +  
Sbjct: 393 SLIWFD--------VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 32/159 (20%)

Query: 150  LKEILQLCDNRRVLFD----NKTKDAAKRTEQNGGQPYIDEIFAELKKRATKLRDQQVEV 205
            LK I+ L    R +       K K  A+  E               KK    L ++ +++
Sbjct: 887  LKAIVYLQCCYRRMMAKRELKKLKIEARSVE-------------RYKKLHIGLENKIMQL 933

Query: 206  DSLKGYSKREISELKEQMKKSYEDQLKRSIEMVESKLKETTTRLEQQLAEEHLARLKAEG 265
                    +E   L E+M       L+ +      KL+            E L   + E 
Sbjct: 934  QRKIDEQNKEYKSLLEKMNN-----LEITYSTETEKLRS---------DVERLRMSEEEA 979

Query: 266  AAQLAQIKS-NEEIFNLREKLERGQRETEELRNGVPKLQ 303
                 ++ S  EEI  LR++L + Q E + +     K +
Sbjct: 980  KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	307
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	100.0
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	100.0
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.95
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.56
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.54
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.53
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.53
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.47
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.45
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.4
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.38
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.35
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.35
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.31
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.29
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.28
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.26
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.26
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.25
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.25
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.24
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.24
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.24
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.23
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.23
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.23
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.21
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.18
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.17
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.16
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.16
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.15
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.14
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.13
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.12
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.12
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.12
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.11
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.1
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.09
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.09
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.08
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.08
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.07
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.07
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.07
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.07
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.06
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.06
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.06
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.06
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.05
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.03
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.03
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.03
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.03
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.03
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.03
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.02
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.02
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.02
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.02
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.02
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.02
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.01
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.01
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.01
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.99
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.99
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.98
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.98
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.98
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.97
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.96
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.95
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.95
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.94
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.93
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.93
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.93
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.93
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.92
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.92
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.9
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.9
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.89
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.89
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.88
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.88
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.87
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.87
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.86
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.86
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.85
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.85
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.85
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.85
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.84
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.84
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.83
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.83
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.82
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.82
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.82
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.81
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.81
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.81
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.8
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.79
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.78
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.78
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.78
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.78
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.76
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.75
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.75
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.74
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.73
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.71
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.71
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.71
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.7
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.7
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.69
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.69
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.68
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.68
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.68
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.66
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.65
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.65
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.64
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.62
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.61
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.61
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.61
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.61
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.59
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.59
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.01
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.59
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.57
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.55
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.52
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.5
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.5
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.49
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.48
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.46
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.45
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.43
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.42
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.41
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.41
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.39
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.39
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.39
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.35
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.35
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.32
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.32
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.31
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.31
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.31
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.28
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.27
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.24
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.23
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.22
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.21
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.16
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.14
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.13
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.1
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.09
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.09
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.08
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.02
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.01
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.0
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.92
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.89
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.84
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.82
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.79
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.76
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.71
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.55
2xxa_A	433	Signal recognition particle protein; protein trans	97.37
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.37
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.36
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.35
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.32
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.31
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.31
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.3
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.26
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.21
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.05
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.04
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.01
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.9
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.7
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.61
2og2_A	359	Putative signal recognition particle receptor; nuc	96.52
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.88
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.8
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.98
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.92
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.9
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.76
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.75
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.71
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.5
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.49
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.47
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.44
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.39
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.24
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.22
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.2
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.2
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.01
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	93.97
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	93.96
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.84
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.82
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	93.78
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	93.72
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.72
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.64
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	93.63
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.58
1g6h_A	257	High-affinity branched-chain amino acid transport	93.58
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.57
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.57
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	93.55
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.54
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.5
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.49
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	93.47
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.46
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.39
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.36
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.3
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.3
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.3
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	93.29
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.27
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.25
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.25
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	93.23
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	93.22
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.18
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.16
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	93.15
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.14
4a74_A	231	DNA repair and recombination protein RADA; hydrola	93.14
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.08
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.07
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.05
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.04
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	93.01
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.01
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	93.0
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	92.99
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.97
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	92.91
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	92.83
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.76
2chg_A	226	Replication factor C small subunit; DNA-binding pr	92.72
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.69
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.63
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	92.63
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	92.57
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	92.56
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	92.54
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	92.48
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	92.41
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	92.39
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.37
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	92.28
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.28
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	92.27
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	92.26
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	92.23
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	92.18
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	92.1
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	91.99
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	91.88
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	91.87
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.85
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	91.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	91.7
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	91.69
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.68
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	91.65
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.63
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	91.61
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.6
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	91.58
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.43
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	91.41
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	91.38
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	91.34
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	91.18
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.14
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	91.13
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.13
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	91.12
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	91.09
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	91.06
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	91.06
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	91.04
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	91.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	90.86
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	90.76
3kta_A	182	Chromosome segregation protein SMC; structural mai	90.74
2cvh_A	220	DNA repair and recombination protein RADB; filamen	90.71
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	90.7
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	90.64
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	90.62
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	90.59
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	90.56
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	90.55
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	90.48
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	90.44
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	90.43
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.36
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	90.34
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	90.31
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	90.3
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	90.26
1via_A	175	Shikimate kinase; structural genomics, transferase	90.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	89.98
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	89.92
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	89.91
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	89.89
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	89.84
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	89.81
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	89.81
2hf9_A	226	Probable hydrogenase nickel incorporation protein	89.8
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	89.76
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	89.74
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	89.68
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	89.52
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	89.34
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	89.29
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	89.28
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	89.27
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	89.27
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	89.22
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	89.21
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	89.19
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	89.07
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	89.06
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	89.05
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	89.04
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	89.02
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	88.92
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	88.69
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	88.68
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.55
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	88.49
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	88.49
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	88.46
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	88.46
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	88.42
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	88.39
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	88.38
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	88.31
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	88.31
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	88.24
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	88.23
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	88.2
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	88.17
2vli_A	183	Antibiotic resistance protein; transferase, tunica	88.1
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	88.07
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	88.01
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	88.0
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	87.95
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	87.93
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	87.89
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	87.79
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	87.76
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	87.76
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	87.74
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	87.56
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	87.36
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	87.24
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	87.02
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	87.0
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	86.96
1xp8_A	366	RECA protein, recombinase A; recombination, radior	86.93
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	86.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	86.92
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	86.88
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	86.83
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	86.8
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	86.78
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	86.74
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	86.7
3bos_A	242	Putative DNA replication factor; P-loop containing	86.36
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	86.36
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	86.36
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	86.35
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	86.22
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	86.17
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	86.13
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	85.96
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	85.88
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	85.87
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	85.72
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	85.71
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	85.69
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	85.58
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	85.23
3pvs_A	447	Replication-associated recombination protein A; ma	85.1
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	85.08
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	85.0
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	84.97
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	84.83
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	84.59
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	84.54
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	84.51
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	84.42
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	84.33
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	84.17
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	84.0
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	83.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	83.88
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	83.8
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	83.8
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	83.77
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	83.68
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	83.66
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	83.63
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	83.58
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	83.36
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	83.33
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	83.27
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	83.14
1tue_A	212	Replication protein E1; helicase, replication, E1E	83.14
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	83.13
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	82.91
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	82.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	82.85
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	82.82
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	82.43
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	82.28
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	82.19
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	82.14
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	81.75
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	81.7
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	81.64
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	81.6
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	81.58
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	81.57
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	81.48
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	81.41
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	81.38
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	81.33
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	81.13
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	80.97
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	80.92
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	80.89
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	80.79
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	80.74
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	80.47
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	80.28

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.3e-33  Score=249.43  Aligned_cols=183  Identities=31%  Similarity=0.556  Sum_probs=136.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|+|+|...+.+..+..++|..|......+ +|+.++|||||   |++++..+..++.+++.+++..+.
T Consensus        35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTp---G~~~~~~~~~~~~~~~~~~~~~~~  110 (239)
T 3lxx_A           35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTP---GIFDTEVPNAETSKEIIRCILLTS  110 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECC---SCC-----CHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECC---CccCCCCCHHHHHHHHHHHHHhcC
Confidence            69999999999999999998887766668899999999999 99999999999   999988888888999999999999


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV  162 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~  162 (307)
                      +++|++|||++++ +++..+...+..+...||...+.++|||+|++|.+..  .++++|+.. .+..++++++.||+||+
T Consensus       111 ~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~~~~~~~  186 (239)
T 3lxx_A          111 PGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDIFGDRYC  186 (239)
T ss_dssp             TCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHHSSSEE
T ss_pred             CCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHHcCCEEE
Confidence            9999999999998 9999999999999999999988999999999999887  689999986 56789999999999999


Q ss_pred             EEcCCCCchh--hHHH-----------HcCCCCCChHHHHHHHH
Q 044972          163 LFDNKTKDAA--KRTE-----------QNGGQPYIDEIFAELKK  193 (307)
Q Consensus       163 ~fnNk~~~~~--~~~~-----------~n~g~~yt~~~~~~~e~  193 (307)
                      +|+|++.+..  .++.           +|+|.||+++||+++++
T Consensus       187 ~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~  230 (239)
T 3lxx_A          187 ALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE  230 (239)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC----------
T ss_pred             EEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence            9999976542  2221           78999999999999984

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.95  E-value=1.6e-26  Score=209.32  Aligned_cols=183  Identities=26%  Similarity=0.501  Sum_probs=152.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|+|.+.|.+...+.++|..|......| +|..++|||||   |++++......+.+++.+++..+.
T Consensus        28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTp---G~~~~~~~~~~~~~~i~~~~~~~~  103 (260)
T 2xtp_A           28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTP---DMFSWKDHCEALYKEVQRCYLLSA  103 (260)
T ss_dssp             EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECC---GGGGSSCCCHHHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECc---CCCCCCCCHHHHHHHHHHHHHhcC
Confidence            69999999999999999999987766666888999888999 99999999999   999887666778888999998899


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV  162 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~  162 (307)
                      +++|++|||++++ +|+..+..++..+.++||..+..++|||+|++.++.+  ..+.+|+....+..++.+++.|+.+++
T Consensus       104 ~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~  180 (260)
T 2xtp_A          104 PGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRIC  180 (260)
T ss_dssp             TCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--CCHHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred             CCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC--ccHHHHHHhcchHHHHHHHHHhCCeEE
Confidence            9999999999998 7999999999999999999888999999995544544  468888876445678999999999999


Q ss_pred             EEcCCCCchhh--HH-----------HHcCCCCCChHHHHHHH
Q 044972          163 LFDNKTKDAAK--RT-----------EQNGGQPYIDEIFAELK  192 (307)
Q Consensus       163 ~fnNk~~~~~~--~~-----------~~n~g~~yt~~~~~~~e  192 (307)
                      .|++-..++..  .+           ..++|.+|+++++.++.
T Consensus       181 ~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~  223 (260)
T 2xtp_A          181 AFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ  223 (260)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC-
T ss_pred             EecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence            89884443221  11           16666899999887766

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=7e-20  Score=167.13  Aligned_cols=160  Identities=16%  Similarity=0.179  Sum_probs=128.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||++|+|+|.+.+... ...+.|..+......+ +|..++|||||   |+.+.....+...+.+.+++  +
T Consensus        41 lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTp---G~~~~~~~~~~~~~~i~~~l--~  113 (262)
T 3def_A           41 VLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTP---GLVEAGYVNHQALELIKGFL--V  113 (262)
T ss_dssp             EEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECC---CSEETTEECHHHHHHHHHHT--T
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECC---CCCCcccchHHHHHHHHHHH--h
Confidence            3699999999999999998864332 2345566777777788 99999999999   99877655667777777765  5


Q ss_pred             CCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC--
Q 044972           82 KDGIHAVLIVFSVRN-RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD--  158 (307)
Q Consensus        82 ~pGpha~LLVl~~~~-RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg--  158 (307)
                      .+++|+||||++++. +|+..+...++.+...||.++++++|||+|+.|....++.++++|+.. ....+++++..|.  
T Consensus       114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~~~~  192 (262)
T 3def_A          114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAGSKM  192 (262)
T ss_dssp             TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred             cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHHhCc
Confidence            679999999998863 799999999999999999999999999999999764444789999975 4567899998876  


Q ss_pred             ---------CeEEEEcCCCC
Q 044972          159 ---------NRRVLFDNKTK  169 (307)
Q Consensus       159 ---------~R~~~fnNk~~  169 (307)
                               ..+.+++|...
T Consensus       193 ~~~~~~~~~~pv~~ve~~~~  212 (262)
T 3def_A          193 RKQEFEDSAIAVVYAENSGR  212 (262)
T ss_dssp             CHHHHHHHCCEEEECCCCTT
T ss_pred             cccccccccCCEEEEeCCCC
Confidence                     45666777653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=7.6e-19  Score=160.70  Aligned_cols=151  Identities=17%  Similarity=0.202  Sum_probs=117.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+|+||||++|+|+|...+.+.. ..+.|..+....... +|..++|||||   |+.+.........+.+.++  +.
T Consensus        44 vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTp---G~~~~~~~~~~~~~~i~~~--~~  116 (270)
T 1h65_A           44 VMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTP---GLIEGGYINDMALNIIKSF--LL  116 (270)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECC---CSEETTEECHHHHHHHHHH--TT
T ss_pred             EECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECC---CCCCCccchHHHHHHHHHH--hh
Confidence            47999999999999999988654332 345566666666777 99999999999   9987655445555666554  34


Q ss_pred             CCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972           82 KDGIHAVLIVFSVRN-RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR  160 (307)
Q Consensus        82 ~pGpha~LLVl~~~~-RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R  160 (307)
                      .+++|++|||++++. +|+..+...++.+...||.+++.++|||+|++|.....+.++++|+.. ....|+.+++. +.+
T Consensus       117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~  194 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS-GAS  194 (270)
T ss_dssp             TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH-HTT
T ss_pred             cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH-hhh
Confidence            578999999988763 799889999999999999999999999999999765544589999875 45677777764 444


Q ss_pred             E
Q 044972          161 R  161 (307)
Q Consensus       161 ~  161 (307)
                      +
T Consensus       195 ~  195 (270)
T 1h65_A          195 L  195 (270)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.56  E-value=1e-14  Score=133.65  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccC------CCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcC---HHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVG------SSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSAD---FEFV   70 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s------~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~---~~~i   70 (307)
                      ++|.||+||||++|+|+|.+.|....+      ..+++.........+ +|.  .++|||||   |+.|....   -..+
T Consensus        13 vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTp---G~~d~~~~~~~~~~i   88 (274)
T 3t5d_A           13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTP---GFGDAVDNSNCWQPV   88 (274)
T ss_dssp             EEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECC---CCSCCSCCTTTTHHH
T ss_pred             EECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECC---CccccccchhhHHHH
Confidence            589999999999999999999876531      222333333333344 564  89999999   98765322   1222


Q ss_pred             HHHH----HHHH---------HhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcc
Q 044972           71 SKEI----VKCI---------GMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDE  136 (307)
Q Consensus        71 ~~eI----~kcv---------~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~  136 (307)
                      ...|    ...+         .+...++|++|+++... ..++..+...++.+..      ..++|+|+|++|.+..  .
T Consensus        89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~--~  160 (274)
T 3t5d_A           89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP--E  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH--H
T ss_pred             HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH--H
Confidence            2111    1111         12345789999999654 3688888877777654      5789999999998865  4


Q ss_pred             cHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972          137 TLEDYLGPECPKPLKEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       137 sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~  168 (307)
                      .+..+..     .+.+.+..++-+++.|...+
T Consensus       161 e~~~~~~-----~i~~~l~~~~i~v~~~sa~~  187 (274)
T 3t5d_A          161 ECQQFKK-----QIMKEIQEHKIKIYEFPETD  187 (274)
T ss_dssp             HHHHHHH-----HHHHHHHHTTCCCCCC----
T ss_pred             HHHHHHH-----HHHHHHHHcCCeEEcCCCCC
Confidence            4554443     36677777888887776543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.54  E-value=2.8e-14  Score=133.60  Aligned_cols=120  Identities=12%  Similarity=0.169  Sum_probs=92.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      .+|.|||||||++|.|+|.+..... ...+.|..+....... + +.++++||||   |+.++. ....+.+.+......
T Consensus        15 ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTP---G~~~~~-~~~~l~~~~~~~~~~   88 (308)
T 3iev_A           15 IVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTP---GIYEPK-KSDVLGHSMVEIAKQ   88 (308)
T ss_dssp             EECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECC---CCCCCC-TTCHHHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECc---CCCccc-cchhHHHHHHHHHHH
Confidence            4799999999999999999865432 2234666777777777 7 9999999999   998765 223455666666666


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      +.+++|++|+|+++..+++..+... +..+..     ...++|||+|+.|.+.
T Consensus        89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~  136 (308)
T 3iev_A           89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIG  136 (308)
T ss_dssp             HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSS
T ss_pred             HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCC
Confidence            6778999999999987788888776 665554     3468999999999873

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.53  E-value=1.3e-13  Score=129.01  Aligned_cols=120  Identities=17%  Similarity=0.104  Sum_probs=91.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|+|.+...+.. ....|+........+ ++.+++++|||   |+.++..   .+.+.+...+..+.
T Consensus        13 vG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTp---G~~~~~~---~l~~~~~~~~~~~l   84 (301)
T 1wf3_A           13 VGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTP---GLHKPMD---ALGEFMDQEVYEAL   84 (301)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECC---CCCCCCS---HHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCc---cccchhh---HHHHHHHHHHHHHH
Confidence            6999999999999999998654322 123455666666667 89999999999   9987642   44455566666777


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|||+++..+++..+...++.+...++   -.++|+|+|+.|....
T Consensus        85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~  132 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY  132 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS
T ss_pred             hcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCc
Confidence            89999999999987899888777777766431   3579999999998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.53  E-value=4.5e-14  Score=123.12  Aligned_cols=121  Identities=11%  Similarity=0.064  Sum_probs=86.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEE-EeCCeEEEEEeCCCCCCCCCCCcCHH--HHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTM-LKDGQVVNVIDTPAIARLFDSSADFE--FVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~-~~~Gr~v~VIDTP~~~Gl~Dt~~~~~--~i~~eI~kcv   78 (307)
                      +|.+||||||++|.|+|.+. .... ...+.|..+...... + ++..+.|||||   |+.++..+..  .....+....
T Consensus        35 ~G~~~~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~Dtp---G~~~~~~~~~~~~~~~~~~~~~  109 (223)
T 4dhe_A           35 AGRSNAGKSTAINVLCNQKRLAFAS-KTPGRTQHINYFSVGPA-AEPVAHLVDLP---GYGYAEVPGAAKAHWEQLLSSY  109 (223)
T ss_dssp             EESCHHHHHHHHHHHTTCSSSSCTT-CCCCSCCCEEEEEESCT-TSCSEEEEECC---CCCSSCCCSTHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHhCCCcceeec-CCCCcccceEEEEecCC-CCCcEEEEcCC---CCCcccCChhhHHHHHHHHHHH
Confidence            69999999999999999873 2222 233456665544443 3 67899999999   9877643322  2222333333


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .....++|++|||+++..+++..+...+..+..     ...++|||+|+.|.+..
T Consensus       110 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~  159 (223)
T 4dhe_A          110 LQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTR  159 (223)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCH
T ss_pred             HhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCCh
Confidence            344678999999999987889888888777765     34679999999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.47  E-value=8.6e-13  Score=112.17  Aligned_cols=119  Identities=14%  Similarity=0.147  Sum_probs=77.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHH--HHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEF--VSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~--i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.++|.+......+..+.|..+..  ..+ + ..+.++|||   |+.++..+...  ....+......
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~-~~~~l~Dt~---G~~~~~~~~~~~~~~~~~~~~~~~  101 (195)
T 1svi_A           29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YII-N-DELHFVDVP---GYGFAKVSKSEREAWGRMIETYIT  101 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEEE--EEE-T-TTEEEEECC---CBCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEE--EEE-C-CcEEEEECC---CCCccccCHHHHHHHHHHHHHHHh
Confidence            699999999999999998622211122234444432  234 4 479999999   98877654321  22223333333


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+++|++|+|+++..+++..+...+.++..     ...+++||+|+.|....
T Consensus       102 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~  149 (195)
T 1svi_A          102 TREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPK  149 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCG
T ss_pred             hhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh
Confidence            4567899999999987888888777777664     34579999999998765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.45  E-value=2.6e-12  Score=108.49  Aligned_cols=146  Identities=11%  Similarity=0.056  Sum_probs=95.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH--HHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE--FVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~--~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.|+|.+.... .+..+.|..+...  .  .+..+.++|||   |+.+...+..  .....+......
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~--~--~~~~~~i~Dt~---G~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T 3pqc_A           29 VGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFY--L--VNSKYYFVDLP---GYGYAKVSKKERMLWKRLVEDYFK  100 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEE--E--ETTTEEEEECC---CBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEE--E--ECCcEEEEECC---CCccccCChhhHHHHHHHHHHHHh
Confidence            69999999999999999873222 2223344444322  2  35578999999   9776544332  223334444444


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC-C
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD-N  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg-~  159 (307)
                      ..+++|++++|+++...++..+...+.++...     -.++|||+|+.|.+..  ..++....     .++.++...+ .
T Consensus       101 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~--~~~~~~~~-----~~~~~~~~~~~~  168 (195)
T 3pqc_A          101 NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM--SERAKKLE-----EHRKVFSKYGEY  168 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG--GGHHHHHH-----HHHHHHHSSCCS
T ss_pred             cCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh--HHHHHHHH-----HHHHHHhhcCCC
Confidence            55789999999998767888888877777764     4689999999998765  33443332     3455555533 3


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       169 ~~~~~Sa~~  177 (195)
T 3pqc_A          169 TIIPTSSVT  177 (195)
T ss_dssp             CEEECCTTT
T ss_pred             ceEEEecCC
Confidence            555554443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.40  E-value=2.1e-12  Score=105.79  Aligned_cols=117  Identities=16%  Similarity=0.089  Sum_probs=80.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|++||||||++|.++|....... ...+.|..+......+ +|..+.++|||   |..+...    +...+.......
T Consensus         6 v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~----~~~~~~~~~~~~   76 (161)
T 2dyk_A            6 IVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTG---GLWSGDK----WEKKIQEKVDRA   76 (161)
T ss_dssp             EECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECG---GGCSSSS----CCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECC---CCCCccc----hHHHHHHHHHHH
Confidence            3699999999999999987632221 2234555666666777 89999999999   9875432    112223333345


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ..+.|++|+|+++..+++..+......+..     ...+++||.|+.|...
T Consensus        77 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~  122 (161)
T 2dyk_A           77 LEDAEVVLFAVDGRAELTQADYEVAEYLRR-----KGKPVILVATKVDDPK  122 (161)
T ss_dssp             TTTCSEEEEEEESSSCCCHHHHHHHHHHHH-----HTCCEEEEEECCCSGG
T ss_pred             HHhCCEEEEEEECCCcccHhHHHHHHHHHh-----cCCCEEEEEECccccc
Confidence            578999999999986788887777676665     3457899999999764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.38  E-value=1.3e-12  Score=127.63  Aligned_cols=117  Identities=15%  Similarity=0.119  Sum_probs=81.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|.|+|.+...+. ...++|+........| +|+.+.|+|||   |+....  .+.+...+......+.
T Consensus         7 vG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~---G~~~~~--~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            7 VGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTC---GVFDNP--QDIISQKMKEVTLNMI   79 (439)
T ss_dssp             ECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECT---TTTSSG--GGCCCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECC---Cccccc--cchHHHHHHHHHHHHH
Confidence            799999999999999998754332 2347888888888899 99999999999   986421  1112233444444556


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      .+.|++|||+++...+|..+.....++..     .-..+|||.|+.|..
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~  123 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAENL  123 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCSH
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCCc
Confidence            88999999999877899988777777765     256799999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.35  E-value=8.9e-12  Score=109.94  Aligned_cols=149  Identities=16%  Similarity=0.085  Sum_probs=86.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.++|.....+  .....|..+......+ ++..+.++|||   |+.+..........  ..++....
T Consensus        35 vG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dtp---G~~~~~~~~~~~~~--~~~~~~~~  106 (228)
T 2qu8_A           35 SGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTP---GLLDRAFENRNTIE--MTTITALA  106 (228)
T ss_dssp             ECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECT---TTTTSCGGGCCHHH--HHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECC---CCcCcccchhhhHH--HHHHHHhh
Confidence            69999999999999999874322  2234566666666677 88999999999   98764321111000  01111124


Q ss_pred             CCCeEEEEEEeCCCCCC---HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC-
Q 044972           83 DGIHAVLIVFSVRNRFS---EEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD-  158 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT---~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg-  158 (307)
                      .++|++|||+++.++.+   ..+...+..+...+   ....+|||+|+.|.+..  ..+....    ...++.+....+ 
T Consensus       107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~--~~~~~~~----~~~~~~~~~~~~~  177 (228)
T 2qu8_A          107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCNM--DSLSIDN----KLLIKQILDNVKN  177 (228)
T ss_dssp             TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC----CCCHHH----HHHHHHHHHHCCS
T ss_pred             ccccEEEEEEecccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCCc--hhhHHHH----HHHHHHHHHhcCC
Confidence            67899999999975543   22333444444332   24579999999998754  2221111    113556666666 


Q ss_pred             -CeEEEEcCCC
Q 044972          159 -NRRVLFDNKT  168 (307)
Q Consensus       159 -~R~~~fnNk~  168 (307)
                       ..|+....++
T Consensus       178 ~~~~~~~SA~~  188 (228)
T 2qu8_A          178 PIKFSSFSTLT  188 (228)
T ss_dssp             CEEEEECCTTT
T ss_pred             CceEEEEeccc
Confidence             4555554443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.35  E-value=3.6e-13  Score=132.30  Aligned_cols=117  Identities=15%  Similarity=0.056  Sum_probs=81.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||++|.|+|.+...+. ...++|..+......| .|..+.|||||   |+.+..   +.+.+++......+.
T Consensus        29 vG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~-~~~~~~liDT~---G~~~~~---~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           29 VGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEW-LNYDFNLIDTG---GIDIGD---EPFLAQIRQQAEIAM  100 (456)
T ss_dssp             ECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCC---C---------CCHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEE-CCceEEEEECC---CCCCcc---hHHHHHHHHHHHhhH
Confidence            799999999999999998754332 3446888888888888 89999999999   987432   334555666666667


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      +++|++|||++....++..+...++.+..     ....+|||+|+.|...
T Consensus       101 ~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~  145 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE  145 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred             hhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence            78999999999877899999888777765     4678999999999764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.31  E-value=8.8e-12  Score=113.88  Aligned_cols=144  Identities=12%  Similarity=0.031  Sum_probs=93.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH--HHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE--FVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~--~i~~eI~kcv~   79 (307)
                      .+|.|||||||++|.++|.+...+..  .++|.........+ +|..+.|||||   |+.+......  ...+.+.+.. 
T Consensus         6 lvG~~n~GKSTL~n~L~g~~~~v~~~--pg~Tv~~~~~~~~~-~~~~~~lvDtp---G~~~~~~~~~~~~~~e~i~~~~-   78 (256)
T 3iby_A            6 LIGNPNCGKTTLFNALTNANQRVGNW--PGVTVEKKTGEFLL-GEHLIEITDLP---GVYSLVANAEGISQDEQIAAQS-   78 (256)
T ss_dssp             EEESTTSSHHHHHHHHHTTSEEEEEC--TTSSSEEEEEEEEE-TTEEEEEEECC---CCSSCC------CHHHHHHHHH-
T ss_pred             EECCCCCCHHHHHHHHHCCCCCccCC--CCceEEEEEEEEEE-CCeEEEEEeCC---CcccccccccCCCHHHHHHHHH-
Confidence            37999999999999999998554432  46777777777788 99999999999   9876542100  1222333322 


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      +...++|++|+|+++. .+ +........+..     .-.++|||+|+.|.....      -+    ...+..+.+..|-
T Consensus        79 ~~~~~~d~vi~VvDas-~~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~------~~----~~~~~~l~~~lg~  141 (256)
T 3iby_A           79 VIDLEYDCIINVIDAC-HL-ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHR------GI----SIDTEKLESLLGC  141 (256)
T ss_dssp             HHHSCCSEEEEEEEGG-GH-HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHT------TC----EECHHHHHHHHCS
T ss_pred             HhhCCCCEEEEEeeCC-Cc-hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcC------Cc----HHHHHHHHHHcCC
Confidence            2236899999999987 32 223333333332     246899999999975431      11    1224556666677


Q ss_pred             eEEEEcCCCC
Q 044972          160 RRVLFDNKTK  169 (307)
Q Consensus       160 R~~~fnNk~~  169 (307)
                      .++....+..
T Consensus       142 ~vi~~SA~~g  151 (256)
T 3iby_A          142 SVIPIQAHKN  151 (256)
T ss_dssp             CEEECBGGGT
T ss_pred             CEEEEECCCC
Confidence            7776665543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.29  E-value=1.6e-11  Score=103.89  Aligned_cols=120  Identities=17%  Similarity=0.104  Sum_probs=79.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.|+|....... ...+.|.........+ +|..+.++|||   |+.+........  .+.+. ....
T Consensus        10 vG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~~~~~~--~~~~~-~~~~   81 (172)
T 2gj8_A           10 AGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTA---GLREASDEVERI--GIERA-WQEI   81 (172)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECC---CCSCCSSHHHHH--HHHHH-HHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECC---CcccchhHHHHH--HHHHH-HHHH
Confidence            699999999999999997642221 1234455666666778 99999999999   987543111111  12221 1234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .+.|++|+|+++.++.+.++...+..+......  -..+|||.|+.|...
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITG  129 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHC
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCc
Confidence            678999999999766665555555555554321  356899999998643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.28  E-value=6.2e-12  Score=119.52  Aligned_cols=82  Identities=16%  Similarity=0.192  Sum_probs=50.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeE
Q 044972           45 DGQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYM  121 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~  121 (307)
                      ++..+++||||   |+++...  ....+...+...+.....+||++|||+... ..+..  ...+..+..+ .+ ....+
T Consensus       134 ~~~~l~lvDtP---G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-~~-~~~~~  206 (360)
T 3t34_A          134 NVVNLTLIDLP---GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DP-SGDRT  206 (360)
T ss_dssp             TSCSEEEEECC---CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS-CT-TCTTE
T ss_pred             CCCCeEEEECC---CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh-cc-cCCCE
Confidence            45689999999   9987522  122334445555555567899998888653 22222  2223333332 22 24579


Q ss_pred             EEEEecCCCCCC
Q 044972          122 IVVFTRGDELED  133 (307)
Q Consensus       122 IVLfT~~D~L~~  133 (307)
                      |+|+|++|.+..
T Consensus       207 i~V~nK~Dl~~~  218 (360)
T 3t34_A          207 FGVLTKIDLMDK  218 (360)
T ss_dssp             EEEEECGGGCCT
T ss_pred             EEEEeCCccCCC
Confidence            999999998865

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.26  E-value=8.1e-12  Score=115.20  Aligned_cols=81  Identities=10%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             CCeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhcCCCCeEEEEEEeC-CCCCCHHH-HHHHHHHHHhhccccCCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMAKDGIHAVLIVFSV-RNRFSEEE-GAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls~pGpha~LLVl~~-~~RfT~ee-~~~l~~i~~~FG~~~~~~  120 (307)
                      ++.++++||||   |+.+...  ....+.+.+...+..+..++|++|||++. +..++..+ ...+..+..     ...+
T Consensus       129 ~~~~~~lvDTp---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~  200 (315)
T 1jwy_B          129 HVVNLTLVDLP---GITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKR  200 (315)
T ss_dssp             TSCSEEEEECC---CCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSS
T ss_pred             CCCCcEEEECC---CCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCc
Confidence            45789999999   9976321  11122233333344445688999999886 43566444 344444432     3568


Q ss_pred             EEEEEecCCCCCC
Q 044972          121 MIVVFTRGDELED  133 (307)
Q Consensus       121 ~IVLfT~~D~L~~  133 (307)
                      +|+|+|++|.+..
T Consensus       201 ~i~v~NK~Dl~~~  213 (315)
T 1jwy_B          201 TIGVITKLDLMDK  213 (315)
T ss_dssp             EEEEEECTTSSCS
T ss_pred             EEEEEcCcccCCc
Confidence            9999999998865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.26  E-value=2.1e-11  Score=113.68  Aligned_cols=116  Identities=13%  Similarity=0.134  Sum_probs=83.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCC-CCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLF-DSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~-Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|+|||||||++|.|+|.+...+.. ....|+....+...+ ++.+++++|||   |+. .+   ...+.+.+...+..+
T Consensus        14 vG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~~-~~~~i~~iDTp---G~~~~~---~~~l~~~~~~~~~~~   85 (301)
T 1ega_A           14 VGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTP---GLHMEE---KRAINRLMNKAASSS   85 (301)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSS---SCCHHH---HHHHHHHHTCCTTSC
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEEE-CCeeEEEEECc---CCCccc---hhhHHHHHHHHHHHH
Confidence            6999999999999999998654321 223455555666677 88999999999   986 21   123333444334456


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....|++++|+++.. ++..+...++.+..     .....|+++|+.|...
T Consensus        86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             CCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred             HhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence            678999999999984 99888766665542     3567899999999765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.25  E-value=4.4e-12  Score=123.89  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=79.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHH-HHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKE-IVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~e-I~kcv~ls   81 (307)
                      +|.|||||||++|.++|.+...... ..+.|..+......+ +|..+.+||||   |+.+.....+.+.+. ..+.+ .+
T Consensus       181 vG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~~-~~~~~~l~DT~---G~~~~~~~~~~~e~~~~~~~~-~~  254 (436)
T 2hjg_A          181 IGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTA---GMRKKGKVYETTEKYSVLRAL-KA  254 (436)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHH---HHTCBTTBCCCCSHHHHHHHH-HH
T ss_pred             EcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEEE-CCeEEEEEECC---CcCcCccccchHHHHHHHHHH-HH
Confidence            6999999999999999987543322 235666666667778 99999999999   986533211111010 11111 12


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|++|||+++..+++.++...+..+..     .-..+|||+|++|.++.
T Consensus       255 ~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~  301 (436)
T 2hjg_A          255 IDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDK  301 (436)
T ss_dssp             HHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCC
T ss_pred             HHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCc
Confidence            345799999999987899888776665543     35789999999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.25  E-value=4.2e-12  Score=124.03  Aligned_cols=117  Identities=15%  Similarity=0.046  Sum_probs=75.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||++|.|+|.+...+. ...++|.........| +|..+.|+|||   |+.....   .+...+..-...+.
T Consensus         9 vG~~nvGKStL~n~l~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~---G~~~~~~---~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            9 VGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEW-LNYDFNLIDTG---GIDIGDE---PFLAQIRQQAEIAM   80 (436)
T ss_dssp             ECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC---------------CHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCceeec-CCCCCccceEEEEEEE-CCceEEEEECC---CCCCcch---hHHHHHHHHHHHHH
Confidence            799999999999999998754332 2346787777777788 89999999999   9863321   14444444444555


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .++|++|||+++...+|..+......+..     .-..+|||.|+.|...
T Consensus        81 ~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence            67999999999977899888766665543     3568999999999764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.24  E-value=6.5e-11  Score=98.62  Aligned_cols=109  Identities=14%  Similarity=0.076  Sum_probs=76.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+++........  .+.|.........+ +|..+.++|||   |..+....           .....
T Consensus        14 ~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~~-----------~~~~~   76 (178)
T 2lkc_A           14 MGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTP---GHEAFTTM-----------RARGA   76 (178)
T ss_dssp             ESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCC---SSSSSSCS-----------CCSSC
T ss_pred             ECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECC---CCHHHHHH-----------HHHHH
Confidence            6999999999999999987443222  23444444455677 99999999999   86543211           11345


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .++|++|||+++..+.+.+....+..+..     .-..++||+|+.|....
T Consensus        77 ~~~d~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           77 QVTDIVILVVAADDGVMPQTVEAINHAKA-----ANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             CCCCEEEEEEETTCCCCHHHHHHHHHHGG-----GSCCEEEEEETTTSSCS
T ss_pred             hhCCEEEEEEECCCCCcHHHHHHHHHHHh-----CCCCEEEEEECccCCcC
Confidence            78999999999876677766655554432     23569999999998754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.24  E-value=2.6e-11  Score=111.48  Aligned_cols=143  Identities=13%  Similarity=-0.008  Sum_probs=93.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC-H-HHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD-F-EFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~-~-~~i~~eI~kcv~l   80 (307)
                      +|.|||||||++|.++|.. |.++. ..++|.........+ +|..+.+||||   |+.+.... . ..+.+.+.+- .+
T Consensus         9 vG~~n~GKSTLin~l~g~~-~~v~~-~~g~t~~~~~~~~~~-~~~~~~liDtp---G~~~~~~~~~~~~~~e~i~~~-~~   81 (274)
T 3i8s_A            9 IGNPNSGKTTLFNQLTGSR-QRVGN-WAGVTVERKEGQFST-TDHQVTLVDLP---GTYSLTTISSQTSLDEQIACH-YI   81 (274)
T ss_dssp             EECTTSSHHHHHHHHHTTC-EEEEE-CTTSSSEEEEEEEEC-SSCEEEEEECC---CCSCSCC----CCHHHHHHHH-HH
T ss_pred             ECCCCCCHHHHHHHHhCCC-cccCC-CCCeeEEEEEEEEEe-CCCceEEEECc---CCCccccccccCCHHHHHHHH-HH
Confidence            6999999999999999998 44332 236677777777777 88999999999   98775421 0 1122223322 23


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR  160 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R  160 (307)
                      ...++|++|+|+++. .+ +.....+..+.+.     -.++|||+|+.|..+..      -+    ...+..+.+..|-.
T Consensus        82 ~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~------~~----~~~~~~l~~~lg~~  144 (274)
T 3i8s_A           82 LSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQ------NI----RIEIDALSARLGCP  144 (274)
T ss_dssp             HHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-----TCCEEEEEECHHHHHHT------TE----EECHHHHHHHHTSC
T ss_pred             hhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-----CCCEEEEEECccchhhh------hH----HHHHHHHHHhcCCC
Confidence            347899999999987 42 3334444445443     46799999999865431      11    11245666666777


Q ss_pred             EEEEcCCCC
Q 044972          161 RVLFDNKTK  169 (307)
Q Consensus       161 ~~~fnNk~~  169 (307)
                      ++...-+..
T Consensus       145 ~i~~SA~~g  153 (274)
T 3i8s_A          145 VIPLVSTRG  153 (274)
T ss_dssp             EEECCCGGG
T ss_pred             EEEEEcCCC
Confidence            776665543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.24  E-value=6.2e-12  Score=124.61  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|+|||||||++|.++|.+...+. ...+.|..+......+ +|.+++++|||   |+.++..   .+...-.+.....
T Consensus       229 ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~---G~~~~~~---~ve~~gi~~~~~~  300 (462)
T 3geh_A          229 IVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTA---GIRETSD---QVEKIGVERSRQA  300 (462)
T ss_dssp             EEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC--------------------------CC
T ss_pred             EEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECC---ccccchh---HHHHHHHHHHhhh
Confidence            3799999999999999998643222 1235666666666678 99999999999   9976432   2222212223345


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..++|++|+|+++..+++..+...+..+..       .++|||+|+.|....
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~  345 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK  345 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG
T ss_pred             hhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc
Confidence            678999999999987888888666655532       589999999997754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.23  E-value=7.2e-11  Score=112.11  Aligned_cols=82  Identities=11%  Similarity=0.059  Sum_probs=48.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcC--HHHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeE
Q 044972           45 DGQVVNVIDTPAIARLFDSSAD--FEFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYM  121 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~--~~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~  121 (307)
                      ++..++|||||   |+.+....  +.++.+.+...+... ....+++|+|++.+..++..+..  ..+..+..  .-.++
T Consensus       128 ~~~~l~lvDTP---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~--~i~~~~~~--~~~~~  200 (353)
T 2x2e_A          128 HVLNLTLVDLP---GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--KVAKEVDP--QGQRT  200 (353)
T ss_dssp             TCCSEEEEECC---CBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH--HHHHHHCT--TCTTE
T ss_pred             CCCCcEEEECC---CCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH--HHHHHhCc--CCCce
Confidence            36789999999   99864321  122222222222222 23456777788876567766542  22333221  34689


Q ss_pred             EEEEecCCCCCC
Q 044972          122 IVVFTRGDELED  133 (307)
Q Consensus       122 IVLfT~~D~L~~  133 (307)
                      |+|+|++|.+..
T Consensus       201 i~V~NK~Dl~~~  212 (353)
T 2x2e_A          201 IGVITKLDLMDE  212 (353)
T ss_dssp             EEEEECGGGSCT
T ss_pred             EEEeccccccCc
Confidence            999999998865

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.23  E-value=2.1e-11  Score=121.25  Aligned_cols=121  Identities=16%  Similarity=0.117  Sum_probs=64.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.|||||||++|.++|.+.+.+.. ..+.|.........+ +|..+.++|||   |+.++.   ..+.....+.....
T Consensus       238 ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~~-~g~~l~liDT~---G~~~~~---~~ve~~gi~~~~~~  309 (476)
T 3gee_A          238 IAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFIH-DKTMFRLTDTA---GLREAG---EEIEHEGIRRSRMK  309 (476)
T ss_dssp             EECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC--------------------------CC
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECC---CCCcch---hHHHHHHHHHHHhh
Confidence            37999999999999999986543221 234566776677788 99999999999   997643   22222222223446


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..++|++|+|+++....+.++......+...+.   -.++|||+|+.|....
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP---AAKFLTVANKLDRAAN  358 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEEEEEEECTTSCTT
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCEEEEEECcCCCCc
Confidence            678999999999986777643222222222232   4689999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.23  E-value=1e-11  Score=121.90  Aligned_cols=121  Identities=14%  Similarity=0.067  Sum_probs=82.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.++|.+.+.+.. ..+.|..+......+ +|..+.++|||   |+.+.....+...+........+.
T Consensus       201 vG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~l~DT~---G~~~~~~~~~~~e~~~~~~~~~~~  275 (456)
T 4dcu_A          201 IGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTA---GMRKKGKVYETTEKYSVLRALKAI  275 (456)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGG---GTTTBTTBCCCCSHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEE-CCceEEEEECC---CCCcCcccchHHHHHHHHHHHHHH
Confidence            6999999999999999987654432 234566666666778 99999999999   976532110000000000011123


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|+|+++...++..+...+..+..     .-..+|||.|++|..+.
T Consensus       276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~  321 (456)
T 4dcu_A          276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDK  321 (456)
T ss_dssp             HHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCC
T ss_pred             hhCCEEEEEEeCCCCcCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCC
Confidence            46799999999987899999888877765     34789999999998765

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.21  E-value=7.5e-10  Score=114.61  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ..|++||||   |+.++....    ..+.    ...++.|++|||+++...++..+...+...   +.. .-.+++||+|
T Consensus       174 ~~l~LiDTP---Gl~~~~~~~----~~~~----~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~---l~~-~~~~iiiVlN  238 (695)
T 2j69_A          174 KGIEIVDSP---GLNDTEARN----ELSL----GYVNNCHAILFVMRASQPCTLGERRYLENY---IKG-RGLTVFFLVN  238 (695)
T ss_dssp             TTEEEEECC---CHHHHHTCH----HHHT----HHHHSSSEEEEEEETTSTTCHHHHHHHHHH---TTT-SCCCEEEEEE
T ss_pred             CCeEEEECC---CCCchhhHH----HHHH----HHHHhCCEEEEEEeCCCccchhHHHHHHHH---HHh-hCCCEEEEEE
Confidence            469999999   987642111    1111    122578999999999878898887655322   211 1345999999


Q ss_pred             cCCCCCC
Q 044972          127 RGDELED  133 (307)
Q Consensus       127 ~~D~L~~  133 (307)
                      ++|.+..
T Consensus       239 K~Dl~~~  245 (695)
T 2j69_A          239 AWDQVRE  245 (695)
T ss_dssp             CGGGGGG
T ss_pred             Ccccccc
Confidence            9997643

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.18  E-value=7.8e-09  Score=105.40  Aligned_cols=102  Identities=16%  Similarity=0.087  Sum_probs=59.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEE--eCCeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTML--KDGQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKC   77 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~--~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kc   77 (307)
                      .+|+|||||||++|.|+|... |..+....++|+........+  ..|..++|||||   |++++.. +...-..-..-+
T Consensus        43 ivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTp---Gi~~~~~~~~~~~~~~fala  119 (592)
T 1f5n_A           43 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTE---GLGDVEKGDNQNDSWIFALA  119 (592)
T ss_dssp             EEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEEC---CBCCGGGCCCTTHHHHHHHH
T ss_pred             EECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCC---CcCcccccchhHHHHHHHHH
Confidence            479999999999999999875 533222223343332211111  157899999999   9998654 221111111222


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL  112 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~  112 (307)
                      +.+++    ++|+.. .+ .+++.+...+..+..+
T Consensus       120 ~llss----~lv~n~-~~-~i~~~dl~~l~~v~e~  148 (592)
T 1f5n_A          120 VLLSS----TFVYNS-IG-TINQQAMDQLYYVTEL  148 (592)
T ss_dssp             HHHCS----EEEEEE-ES-CSSHHHHHTTHHHHTH
T ss_pred             HHhcC----eEEEEC-CC-CccHHHHHHHHHHHHH
Confidence            33443    333322 34 8999998877766543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.17  E-value=3.4e-10  Score=103.33  Aligned_cols=140  Identities=16%  Similarity=0.084  Sum_probs=90.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls   81 (307)
                      +|.|||||||++|.++|...+....  .++|.........+ ++..+.++|||   |+.+... +.+   +.+.+.+. .
T Consensus        11 vG~~nvGKTsL~n~l~g~~~~~~~~--pg~tv~~~~~~~~~-~~~~~~l~Dtp---G~~~~~~~~~~---e~v~~~~~-~   80 (258)
T 3a1s_A           11 AGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTY-KGYTINLIDLP---GTYSLGYSSID---EKIARDYL-L   80 (258)
T ss_dssp             ECCTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECC---CCSSCCSSSHH---HHHHHHHH-H
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCC--CCceEEEEEEEEEE-CCeEEEEEECC---CcCccCCCCHH---HHHHHHHH-h
Confidence            6999999999999999988554332  35676666666667 88999999999   9876432 222   12222221 1


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR  161 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~  161 (307)
                      ..++|++|+|+++. .+.. .   +.++..+..  .-.++|||+|+.|.....      .+.    .....+.+..|-.|
T Consensus        81 ~~~~d~ii~V~D~t-~~~~-~---~~~~~~l~~--~~~pvilv~NK~Dl~~~~------~i~----~~~~~l~~~lg~~v  143 (258)
T 3a1s_A           81 KGDADLVILVADSV-NPEQ-S---LYLLLEILE--MEKKVILAMTAIDEAKKT------GMK----IDRYELQKHLGIPV  143 (258)
T ss_dssp             HSCCSEEEEEEETT-SCHH-H---HHHHHHHHT--TTCCEEEEEECHHHHHHT------TCC----BCHHHHHHHHCSCE
T ss_pred             hcCCCEEEEEeCCC-chhh-H---HHHHHHHHh--cCCCEEEEEECcCCCCcc------chH----HHHHHHHHHcCCCE
Confidence            26899999999987 4422 2   223333322  246799999999865321      121    23567777777777


Q ss_pred             EEEcCCCC
Q 044972          162 VLFDNKTK  169 (307)
Q Consensus       162 ~~fnNk~~  169 (307)
                      +...-+..
T Consensus       144 i~~SA~~g  151 (258)
T 3a1s_A          144 VFTSSVTG  151 (258)
T ss_dssp             EECCTTTC
T ss_pred             EEEEeeCC
Confidence            76665543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.16  E-value=1.1e-10  Score=106.50  Aligned_cols=141  Identities=13%  Similarity=0.050  Sum_probs=91.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls   81 (307)
                      +|+|||||||++|.|+|... ..+. ..++|.........+ +|..+.++|||   |+.+... +...   .+.+ ..+.
T Consensus         9 vG~~g~GKTTL~n~l~g~~~-~~~~-~~~~t~~~~~~~~~~-~~~~~~l~Dtp---G~~~~~~~~~~~---~~~~-~~~~   78 (271)
T 3k53_A            9 VGNPNVGKTTIFNALTGLRQ-HVGN-WPGVTVEKKEGIMEY-REKEFLVVDLP---GIYSLTAHSIDE---LIAR-NFIL   78 (271)
T ss_dssp             EECSSSSHHHHHHHHHTTCE-EEEE-CTTSSCEEEEEEEEE-TTEEEEEEECC---CCSCCCSSCHHH---HHHH-HHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCc-ccCC-CCCeEEEeeEEEEEE-CCceEEEEeCC---CccccccCCHHH---HHHH-Hhhh
Confidence            69999999999999999864 4332 345677777777788 99999999999   9876432 2221   2222 2233


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR  161 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~  161 (307)
                      .+++|++|+|+++. .+ .   ..+.++..+.... ..+++||+|+.|..+.      ..+    ......+.+..|-.+
T Consensus        79 ~~~~d~vi~v~D~~-~~-~---~~~~~~~~~~~~~-~~p~ilv~NK~Dl~~~------~~~----~~~~~~l~~~lg~~~  142 (271)
T 3k53_A           79 DGNADVIVDIVDST-CL-M---RNLFLTLELFEME-VKNIILVLNKFDLLKK------KGA----KIDIKKMRKELGVPV  142 (271)
T ss_dssp             TTCCSEEEEEEEGG-GH-H---HHHHHHHHHHHTT-CCSEEEEEECHHHHHH------HTC----CCCHHHHHHHHSSCE
T ss_pred             ccCCcEEEEEecCC-cc-h---hhHHHHHHHHhcC-CCCEEEEEEChhcCcc------ccc----HHHHHHHHHHcCCcE
Confidence            57899999999987 43 2   2233333333221 1678999999986432      111    112566667777777


Q ss_pred             EEEcCCCC
Q 044972          162 VLFDNKTK  169 (307)
Q Consensus       162 ~~fnNk~~  169 (307)
                      +...-+..
T Consensus       143 ~~~Sa~~g  150 (271)
T 3k53_A          143 IPTNAKKG  150 (271)
T ss_dssp             EECBGGGT
T ss_pred             EEEEeCCC
Confidence            76665443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.16  E-value=4.7e-10  Score=94.58  Aligned_cols=109  Identities=12%  Similarity=0.008  Sum_probs=73.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|++++.+ +..    ...|.........+ ++..+.++|||   |..+           .........
T Consensus        24 ~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~---G~~~-----------~~~~~~~~~   83 (186)
T 1ksh_A           24 LGLDNAGKTTILKKFNGED-VDT----ISPTLGFNIKTLEH-RGFKLNIWDVG---GQKS-----------LRSYWRNYF   83 (186)
T ss_dssp             ECSTTSSHHHHHHHHTTCC-CSS----CCCCSSEEEEEEEE-TTEEEEEEEEC---CSHH-----------HHTTGGGGC
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCc----ccccCccceEEEEE-CCEEEEEEECC---CCHh-----------HHHHHHHHh
Confidence            6999999999999999987 321    12344455566677 89999999999   8632           111223456


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~  133 (307)
                      ++.|++|+|+++.++-+-+  .+..++..++..  ..-..+|||.|+.|....
T Consensus        84 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (186)
T 1ksh_A           84 ESTDGLIWVVDSADRQRMQ--DCQRELQSLLVEERLAGATLLIFANKQDLPGA  134 (186)
T ss_dssp             TTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             cCCCEEEEEEECcCHHHHH--HHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence            7899999999987432222  222334443332  124679999999997654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.15  E-value=1.4e-10  Score=111.13  Aligned_cols=150  Identities=14%  Similarity=0.116  Sum_probs=75.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCC-----CCCCceeEEE--EEEEeCCe--EEEEEeCCCCCCCCCCCcCH-----
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGS-----SEDTKTCEMQ--RTMLKDGQ--VVNVIDTPAIARLFDSSADF-----   67 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~-----~svT~~c~~~--~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~-----   67 (307)
                      .+|++|+||||++|+|+|...|..+...     ...|......  ...+ +|.  .++|+|||   |+.|.....     
T Consensus        42 vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTp---G~gd~~~~~e~~~~  117 (361)
T 2qag_A           42 VVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTP---GYGDAINCRDCFKT  117 (361)
T ss_dssp             ECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC-----------------CC
T ss_pred             EEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEec---cccccCccHHHHHH
Confidence            5799999999999999999888654311     0122222221  2223 454  78999999   996643211     


Q ss_pred             --HHHHHHHHHHHH---------hcCCCCeEEEEEEeC-CCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCc
Q 044972           68 --EFVSKEIVKCIG---------MAKDGIHAVLIVFSV-RNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDND  135 (307)
Q Consensus        68 --~~i~~eI~kcv~---------ls~pGpha~LLVl~~-~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~  135 (307)
                        ..+...+...+.         +...++|++||++.. +..|...+...++.+    +  ...++|||+|++|.+..  
T Consensus       118 i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~~--  189 (361)
T 2qag_A          118 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLTL--  189 (361)
T ss_dssp             THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSCH--
T ss_pred             HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCCH--
Confidence              111111112221         123467889988875 447888776554443    2  24579999999998865  


Q ss_pred             ccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972          136 ETLEDYLGPECPKPLKEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       136 ~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~  168 (307)
                      ..+..+..     .+..+++.++-.|+.|..++
T Consensus       190 ~ev~~~k~-----~i~~~~~~~~i~~~~~Sa~~  217 (361)
T 2qag_A          190 KERERLKK-----RILDEIEEHNIKIYHLPDAE  217 (361)
T ss_dssp             HHHHHHHH-----HHHHHTTCC-CCSCCCC---
T ss_pred             HHHHHHHH-----HHHHHHHHCCCCEEeCCCcC
Confidence            33433321     34556666666776666543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.14  E-value=4.9e-10  Score=94.28  Aligned_cols=135  Identities=12%  Similarity=0.023  Sum_probs=80.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC------------------------------------
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG------------------------------------   46 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G------------------------------------   46 (307)
                      +|++||||||++|.++|.. |..... ..++.........+ ++                                    
T Consensus        13 ~G~~~~GKSsli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (208)
T 3clv_A           13 LGESSVGKSSIVLRLTKDT-FHENTN-TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNEN   89 (208)
T ss_dssp             ECCTTSSHHHHHHHHHHSC-CCSSCC-CCCSCEEEEEEEET-TC-------------------------------CCCTT
T ss_pred             ECCCCCCHHHHHHHHHhCc-CCCCcC-ccccceeEEEEEEe-cCccccccccccccccccccccccccccccccccccCc
Confidence            6999999999999999986 432221 12222333333344 44                                    


Q ss_pred             ---eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEE
Q 044972           47 ---QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMI  122 (307)
Q Consensus        47 ---r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~I  122 (307)
                         ..+.++|||   |..+....           ......+.|++|||+++.++.+-++ ...+..+....+    ..+|
T Consensus        90 ~~~~~~~i~Dt~---G~~~~~~~-----------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pii  151 (208)
T 3clv_A           90 LCNIKFDIWDTA---GQERYASI-----------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIII  151 (208)
T ss_dssp             TCEEEEEEEECT---TGGGCTTT-----------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEE
T ss_pred             cceeEEEEEECC---CcHHHHHH-----------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEE
Confidence               689999999   85432211           1122357899999999874322222 222333333322    7899


Q ss_pred             EEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972          123 VVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       123 VLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~  168 (307)
                      ||+|+.| +.....+         ...++.+++..+-.|+...-++
T Consensus       152 lv~NK~D-~~~~~~~---------~~~~~~~~~~~~~~~~~~Sa~~  187 (208)
T 3clv_A          152 LVANKID-KNKFQVD---------ILEVQKYAQDNNLLFIQTSAKT  187 (208)
T ss_dssp             EEEECTT-CC-CCSC---------HHHHHHHHHHTTCEEEEECTTT
T ss_pred             EEEECCC-cccccCC---------HHHHHHHHHHcCCcEEEEecCC
Confidence            9999999 4331111         2345667777777776666544

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.13  E-value=3.9e-10  Score=94.22  Aligned_cols=138  Identities=10%  Similarity=0.083  Sum_probs=80.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.++|...+.+..  .+.|.........+ +|..+.++|||   |..+.....  ..+.+..... ..
T Consensus         9 vG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~l~i~Dt~---G~~~~~~~~--~~~~~~~~~~-~~   79 (165)
T 2wji_A            9 IGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLP---GVYSLTANS--IDEIIARDYI-IN   79 (165)
T ss_dssp             ECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECC---CCSCSSSSS--HHHHHHHHHH-HH
T ss_pred             ECCCCCCHHHHHHHHhCCCeeccCC--CCcceeeeEEEEEE-CCcEEEEEECC---CcccCCCcc--hhHHHHHHHH-hc
Confidence            6999999999999999986543322  23444555555667 89999999999   987543211  1122222211 12


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV  162 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~  162 (307)
                      .++|++++|+++. .+. .   ...++..+..  .-..+|||.|+.|....  .    .+.    .....+.+..+..|+
T Consensus        80 ~~~~~~i~v~D~~-~~~-~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~--~----~~~----~~~~~~~~~~~~~~~  142 (165)
T 2wji_A           80 EKPDLVVNIVDAT-ALE-R---NLYLTLQLME--MGANLLLALNKMDLAKS--L----GIE----IDVDKLEKILGVKVV  142 (165)
T ss_dssp             HCCSEEEEEEETT-CHH-H---HHHHHHHHHH--TTCCEEEEEECHHHHHH--T----TCC----CCHHHHHHHHTSCEE
T ss_pred             CCCCEEEEEecCC-chh-H---hHHHHHHHHh--cCCCEEEEEEchHhccc--c----Chh----hHHHHHHHHhCCCEE
Confidence            3689999999986 432 1   2223333221  23578899998885422  1    111    124566666666665


Q ss_pred             EEcC
Q 044972          163 LFDN  166 (307)
Q Consensus       163 ~fnN  166 (307)
                      ...-
T Consensus       143 ~~SA  146 (165)
T 2wji_A          143 PLSA  146 (165)
T ss_dssp             ECBG
T ss_pred             EEEc
Confidence            5443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.12  E-value=1.4e-10  Score=96.45  Aligned_cols=139  Identities=12%  Similarity=-0.040  Sum_probs=82.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.++|......  ...+.|.........+ +|  ..+.++|||   |..+....           ..
T Consensus        14 v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~   76 (181)
T 3tw8_B           14 IIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTA---GQERFRTI-----------TS   76 (181)
T ss_dssp             EECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEET---TGGGCSSC-----------CG
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCC---Cchhhhhh-----------HH
Confidence            369999999999999999874422  2233444555556667 77  578999999   85432211           12


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...++.|++|||+++.++-+-+  .+..++..+.......++|||+|+.|.....  .    +   .......+....+.
T Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~  145 (181)
T 3tw8_B           77 TYYRGTHGVIVVYDVTSAESFV--NVKRWLHEINQNCDDVCRILVGNKNDDPERK--V----V---ETEDAYKFAGQMGI  145 (181)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHCTTSEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHTC
T ss_pred             HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECCCCchhc--c----c---CHHHHHHHHHHcCC
Confidence            3457889999999987432222  2222333322222246789999999965431  1    1   11234566666676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+....++
T Consensus       146 ~~~~~Sa~~  154 (181)
T 3tw8_B          146 QLFETSAKE  154 (181)
T ss_dssp             CEEECBTTT
T ss_pred             eEEEEECCC
Confidence            776655543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.12  E-value=2.4e-10  Score=104.23  Aligned_cols=80  Identities=11%  Similarity=0.097  Sum_probs=47.0

Q ss_pred             CeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhcCCCCe-EEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeE
Q 044972           46 GQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMAKDGIH-AVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYM  121 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls~pGph-a~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~  121 (307)
                      +..+++||||   |+.+...  ..+.+...+...+.....+.+ ++|+|+++...++..+. ..++.+.    + ...++
T Consensus       124 ~~~l~lvDtp---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~-~~~~~  195 (299)
T 2aka_B          124 VLNLTLVDLP---GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----P-QGQRT  195 (299)
T ss_dssp             CCSEEEEECC---CBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----T-TCSSE
T ss_pred             CCCceEEeCC---CCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----C-CCCeE
Confidence            4799999999   9986431  011111122222222223555 45578998766777664 2333332    1 34689


Q ss_pred             EEEEecCCCCCC
Q 044972          122 IVVFTRGDELED  133 (307)
Q Consensus       122 IVLfT~~D~L~~  133 (307)
                      |+|+|++|.+..
T Consensus       196 i~V~NK~Dl~~~  207 (299)
T 2aka_B          196 IGVITKLDLMDE  207 (299)
T ss_dssp             EEEEECGGGSCT
T ss_pred             EEEEEccccCCC
Confidence            999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.12  E-value=9e-11  Score=114.66  Aligned_cols=120  Identities=18%  Similarity=0.087  Sum_probs=74.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHH-HHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSK-EIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~-eI~kcv~l   80 (307)
                      +|+|||||||++|.|+|.....+. ...++|.........+ +|+.+.++|||   |+....... +.+.. ...+. ..
T Consensus       186 vG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~---G~~~~~~~~~~~~e~~~~~~~-~~  259 (439)
T 1mky_A          186 VGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTA---GLRRKSRVEPRTVEKYSNYRV-VD  259 (439)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCS---CC-----------CCSCCHHH-HH
T ss_pred             ECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECC---CCccccccchhhHHHHHHHHH-HH
Confidence            699999999999999998754332 2235666666677788 99999999999   874221100 00000 00000 01


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .....|++|+|+++...++.++..+...+..     .-..+|||+|++|.++.
T Consensus       260 ~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-----~~~~~ilv~NK~Dl~~~  307 (439)
T 1mky_A          260 SIEKADVVVIVLDATQGITRQDQRMAGLMER-----RGRASVVVFNKWDLVVH  307 (439)
T ss_dssp             HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTT
T ss_pred             HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCCc
Confidence            1235789999999876788877665555443     34689999999998765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.11  E-value=2.6e-09  Score=89.43  Aligned_cols=137  Identities=14%  Similarity=0.061  Sum_probs=79.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |....  .+.+.........+ +|..  +.++|||   |..+......           .
T Consensus        10 ~G~~~~GKSsli~~l~~~~-~~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~~-----------~   71 (189)
T 4dsu_A           10 VGADGVGKSALTIQLIQNH-FVDEY--DPTIEDSYRKQVVI-DGETCLLDILDTA---GQEEYSAMRD-----------Q   71 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSS-CCCCC--CTTCCEEEEEEEEE-TTEEEEEEEEECC---CC---CTTHH-----------H
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCC--CCCchheEEEEEEE-CCcEEEEEEEECC---CcHHHHHHHH-----------H
Confidence            6999999999999999876 43222  22233344444556 7765  6679999   8654322111           1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|+|+++.++-+-++ ...+..+..... ..-..++||+|+.|..... .         ....+..+....+.
T Consensus        72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~-~---------~~~~~~~~~~~~~~  140 (189)
T 4dsu_A           72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRT-V---------DTKQAQDLARSYGI  140 (189)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCS-S---------CHHHHHHHHHHHTC
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccc-c---------CHHHHHHHHHHcCC
Confidence            1235899999999873322112 222233333222 2345789999999976431 1         12245666777777


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+.++
T Consensus       141 ~~~~~Sa~~  149 (189)
T 4dsu_A          141 PFIETSAKT  149 (189)
T ss_dssp             CEEECCTTT
T ss_pred             eEEEEeCCC
Confidence            776665544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.10  E-value=3.8e-10  Score=94.10  Aligned_cols=138  Identities=11%  Similarity=-0.052  Sum_probs=79.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++....... .....+.........+ +|.  .+.++|||   |..+.           ......
T Consensus        16 ~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~---G~~~~-----------~~~~~~   79 (180)
T 2g6b_A           16 VGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTA---GQERF-----------RSVTHA   79 (180)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECC---CC-------------------C
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCC---CcHHH-----------HHHHHH
Confidence            699999999999999987643221 1223333344444456 775  78999999   85321           111223


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-++ ...+..+.....  ....++||+|+.|.......+         ....+.+.+..+-
T Consensus        80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  148 (180)
T 2g6b_A           80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVK---------REDGEKLAKEYGL  148 (180)
T ss_dssp             CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSC---------HHHHHHHHHHHTC
T ss_pred             HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccC---------HHHHHHHHHHcCC
Confidence            4467899999999873322221 223333444332  345899999999987541111         1234555666666


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      .|+...-+
T Consensus       149 ~~~~~Sa~  156 (180)
T 2g6b_A          149 PFMETSAK  156 (180)
T ss_dssp             CEEECCTT
T ss_pred             eEEEEeCC
Confidence            66555443

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.09  E-value=7.1e-10  Score=95.90  Aligned_cols=111  Identities=14%  Similarity=0.078  Sum_probs=74.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC---CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD---GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~---Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.+++.. |.....  +.+  .......+ +   +..+.++|||   |..+       ....+.   .
T Consensus        13 vG~~~~GKTsli~~l~~~~-~~~~~~--~~~--~~~~~~~~-~~~~~~~~~i~Dt~---G~~~-------~~~~~~---~   73 (214)
T 2fh5_B           13 VGLCDSGKTLLFVRLLTGQ-YRDTQT--SIT--DSSAIYKV-NNNRGNSLTLIDLP---GHES-------LRFQLL---D   73 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCCBCC--CCS--CEEEEEEC-SSTTCCEEEEEECC---CCHH-------HHHHHH---H
T ss_pred             ECCCCCCHHHHHHHHhCCC-cccccC--Ccc--eeeEEEEe-cCCCccEEEEEECC---CChh-------HHHHHH---H
Confidence            6999999999999999876 543322  222  23334566 5   5789999999   8632       112122   2


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc----ccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK----KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~----~~~~~~IVLfT~~D~L~~  133 (307)
                      ....++|++|||+++. .+.........++..++..    ....++|||.|+.|....
T Consensus        74 ~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           74 RFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             HHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             HHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            2357899999999987 5544445555666655433    234689999999998765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.09  E-value=4.7e-10  Score=117.36  Aligned_cols=121  Identities=12%  Similarity=0.056  Sum_probs=79.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCce-----------------------------------------------
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT-----------------------------------------------   35 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~-----------------------------------------------   35 (307)
                      +|.+++||||++|+|+|.+.+.++..  .+|+.                                               
T Consensus        57 vG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~  134 (772)
T 3zvr_A           57 VGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG  134 (772)
T ss_dssp             EECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTC
T ss_pred             ECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCc
Confidence            69999999999999999887654422  23321                                               


Q ss_pred             ----eEEEEEEEeCCeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHH-HHHH
Q 044972           36 ----CEMQRTMLKDGQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEG-AAIH  107 (307)
Q Consensus        36 ----c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~-~~l~  107 (307)
                          ...-....|++.++++||||   |++....  .+.++...+.+.+... ....+++|+|+++...++..+. ..+.
T Consensus       135 is~~~i~l~I~~P~~~qL~LVDTP---Gi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~  211 (772)
T 3zvr_A          135 ISPVPINLRVYSPHVLNLTLVDLP---GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK  211 (772)
T ss_dssp             CCSCCEEEEEEETTCCSEEEEECC---CCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHH
T ss_pred             ccccceEEEEecCCCCceEEEECC---CcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHH
Confidence                11112223456789999999   9987432  1222222333322221 2578999999998767777775 4554


Q ss_pred             HHHHhhccccCCeEEEEEecCCCCCC
Q 044972          108 SLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus       108 ~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .+..     ....+|+|+|++|.+..
T Consensus       212 ~L~~-----~g~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          212 EVDP-----QGQRTIGVITKLDLMDE  232 (772)
T ss_dssp             HHCT-----TCSSEEEEEECTTSSCT
T ss_pred             HHHh-----cCCCEEEEEeCcccCCc
Confidence            4432     35789999999999865

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.08  E-value=5.8e-10  Score=93.06  Aligned_cols=138  Identities=15%  Similarity=0.016  Sum_probs=80.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++........+  +++.........+ ++  ..+.++|||   |......        +   ...
T Consensus        18 ~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~--------~---~~~   80 (181)
T 2efe_B           18 LGDVGAGKSSLVLRFVKDQFVEFQES--TIGAAFFSQTLAV-NDATVKFEIWDTA---GQERYHS--------L---APM   80 (181)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCTTTSCC--CSCCSEEEEEEEE-TTEEEEEEEEECC---CSGGGGG--------G---THH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCcCCC--CceeEEEEEEEEE-CCEEEEEEEEeCC---CChhhhh--------h---hHH
Confidence            69999999999999998864432222  2222233334445 54  489999999   8532110        0   112


Q ss_pred             cCCCCeEEEEEEeCCCCCC-HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFS-EEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT-~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+ +.....+..+.....  .-..++||+|+.|.......+         ...++.+.+..+-
T Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  149 (181)
T 2efe_B           81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVT---------AEDAQTYAQENGL  149 (181)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSC---------HHHHHHHHHHTTC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCC---------HHHHHHHHHHcCC
Confidence            2357899999999864332 112223333333321  145689999999976541111         1235566666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       150 ~~~~~Sa~~  158 (181)
T 2efe_B          150 FFMETSAKT  158 (181)
T ss_dssp             EEEECCSSS
T ss_pred             EEEEEECCC
Confidence            666555443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.08  E-value=1.7e-09  Score=90.67  Aligned_cols=139  Identities=10%  Similarity=-0.073  Sum_probs=80.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCC-----------eEEEEEeCCCCCCCCCCCcCHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDG-----------QVVNVIDTPAIARLFDSSADFEFV   70 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~G-----------r~v~VIDTP~~~Gl~Dt~~~~~~i   70 (307)
                      +|.+||||||++|.+++... ..... .+++.... .....+ ++           ..+.++|||   |....       
T Consensus        17 ~G~~~~GKSsli~~l~~~~~-~~~~~-~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~---G~~~~-------   83 (195)
T 3bc1_A           17 LGDSGVGKTSVLYQYTDGKF-NSKFI-TTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTA---GLERF-------   83 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC-CCSCC-CCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEEC---CSGGG-------
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CcCcc-cccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCC---CcHHH-------
Confidence            69999999999999998753 22211 11121222 223344 43           489999999   97321       


Q ss_pred             HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCch
Q 044972           71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKP  149 (307)
Q Consensus        71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~  149 (307)
                          .........+.|++|||+++.++.+-++ ...+..+..... .....++||+|+.|.....  .    +   ....
T Consensus        84 ----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~----~---~~~~  149 (195)
T 3bc1_A           84 ----RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQR--A----V---KEEE  149 (195)
T ss_dssp             ----HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGC--C----S---CHHH
T ss_pred             ----HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--c----c---CHHH
Confidence                1112345678999999999873322222 222333333221 1245789999999975431  1    1   1134


Q ss_pred             HHHHHHhcCCeEEEEcCCC
Q 044972          150 LKEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       150 Lk~Li~~Cg~R~~~fnNk~  168 (307)
                      ++.+....+-.|+..+.++
T Consensus       150 ~~~~~~~~~~~~~~~Sa~~  168 (195)
T 3bc1_A          150 ARELAEKYGIPYFETSAAN  168 (195)
T ss_dssp             HHHHHHHHTCCEEECCTTT
T ss_pred             HHHHHHHcCCCEEEEECCC
Confidence            5666666676666655543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.07  E-value=1.2e-10  Score=95.57  Aligned_cols=141  Identities=12%  Similarity=-0.026  Sum_probs=80.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++........  ...+.+.......+ ++.  .+.++|||   |..+...    +       ...
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~---G~~~~~~----~-------~~~   71 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTA---GQERFAS----L-------APX   71 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG----G-------HHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECC---CChhhhh----h-------hhh
Confidence            6999999999999999876332211  12222333344455 554  88999999   8543111    1       112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ..++.|++|+|+++.++.+-++ ...+..+....+  .-..++||+|+.|.....  ... .+   .......+....+-
T Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~~~-~v---~~~~~~~~~~~~~~  143 (170)
T 1ek0_A           72 YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEG--GER-KV---AREEGEKLAEEKGL  143 (170)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSS--CCC-CS---CHHHHHHHHHHHTC
T ss_pred             hhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccccc--ccc-CC---CHHHHHHHHHHcCC
Confidence            2367899999999874322222 122333333322  235688999999977541  100 01   11234566666676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+.++
T Consensus       144 ~~~~~Sa~~  152 (170)
T 1ek0_A          144 LFFETSAKT  152 (170)
T ss_dssp             EEEECCTTT
T ss_pred             EEEEEeCCC
Confidence            776666554

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.07  E-value=9.4e-10  Score=90.63  Aligned_cols=138  Identities=9%  Similarity=-0.005  Sum_probs=81.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++..... .. ..+++.........+ +|.  .+.++|||   |..+..           .....
T Consensus        12 ~G~~~~GKssli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~-----------~~~~~   74 (170)
T 1z08_A           12 LGEGCVGKTSLVLRYCENKFND-KH-ITTLGASFLTKKLNI-GGKRVNLAIWDTA---GQERFH-----------ALGPI   74 (170)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCCS-SC-CCCCSCEEEEEEEES-SSCEEEEEEEECC---CC------------------CC
T ss_pred             ECcCCCCHHHHHHHHHcCCCCc-CC-CCccceEEEEEEEEE-CCEEEEEEEEECC---CcHhhh-----------hhHHH
Confidence            6999999999999999876322 21 122333333344455 664  67788999   853211           11223


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-+. ...+..+....+.  ...++||+|+.|.......+         ....+.+.+..+.
T Consensus        75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  143 (170)
T 1z08_A           75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVS---------IQEAESYAESVGA  143 (170)
T ss_dssp             SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccC---------HHHHHHHHHHcCC
Confidence            4578999999999873322121 2233334444332  35789999999976431111         1245667777777


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+....++
T Consensus       144 ~~~~~Sa~~  152 (170)
T 1z08_A          144 KHYHTSAKQ  152 (170)
T ss_dssp             EEEEEBTTT
T ss_pred             eEEEecCCC
Confidence            777666554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.07  E-value=1.6e-10  Score=98.25  Aligned_cols=111  Identities=13%  Similarity=-0.017  Sum_probs=73.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.++|...|....   ..|.........+ +|..+.++|||   |..+...           ......
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~-----------~~~~~~   88 (190)
T 2h57_A           27 LGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMS---GQGRYRN-----------LWEHYY   88 (190)
T ss_dssp             EECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEEC---CSTTTGG-----------GGGGGG
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECC---CCHHHHH-----------HHHHHH
Confidence            6999999999999999988665432   2344555666677 89999999999   8654221           112334


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc----cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK----VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~----~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|||+++.++-+-  ..+..++..++...    ....+|||+|+.|....
T Consensus        89 ~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           89 KEGQAIIFVIDSSDRLRM--VVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             GGCSEEEEEEETTCHHHH--HHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             hcCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            678999999998733111  12223333333221    24579999999998654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.07  E-value=1e-09  Score=92.48  Aligned_cols=140  Identities=11%  Similarity=0.090  Sum_probs=86.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.|+|...+.+..  .++|.........+ +|..+.++|||   |..+.....  ..+.+..... ..
T Consensus        13 vG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~~~--~~~~~~~~~~-~~   83 (188)
T 2wjg_A           13 IGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLP---GVYSLTANS--IDEIIARDYI-IN   83 (188)
T ss_dssp             ECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECC---CCSCCSSSS--HHHHHHHHHH-HH
T ss_pred             ECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECC---CcCcccccc--HHHHHHHHHH-hc
Confidence            6999999999999999987655433  24565666667777 89999999999   987543211  1112222111 11


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRV  162 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~  162 (307)
                      .++|++++|++.. .+ +.   ...++..+..  .-..+|||+|+.|....  .    -+    ...+..+.+.++-.|+
T Consensus        84 ~~~~~~i~v~d~~-~~-~~---~~~~~~~~~~--~~~piilv~nK~Dl~~~--~----~~----~~~~~~~~~~~~~~~~  146 (188)
T 2wjg_A           84 EKPDLVVNIVDAT-AL-ER---NLYLTLQLME--MGANLLLALNKMDLAKS--L----GI----EIDVDKLEKILGVKVV  146 (188)
T ss_dssp             HCCSEEEEEEEGG-GH-HH---HHHHHHHHHT--TTCCEEEEEECHHHHHH--T----TC----CCCHHHHHHHHTSCEE
T ss_pred             cCCCEEEEEecch-hH-HH---HHHHHHHHHh--cCCCEEEEEEhhhcccc--c----cc----hHHHHHHHHHhCCCeE
Confidence            3589999999876 33 11   2223333222  23468889998885432  1    11    1246777777777777


Q ss_pred             EEcCCC
Q 044972          163 LFDNKT  168 (307)
Q Consensus       163 ~fnNk~  168 (307)
                      ....++
T Consensus       147 ~~Sa~~  152 (188)
T 2wjg_A          147 PLSAAK  152 (188)
T ss_dssp             ECBGGG
T ss_pred             EEEecC
Confidence            665443

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.06  E-value=1.8e-09  Score=89.01  Aligned_cols=110  Identities=12%  Similarity=-0.046  Sum_probs=73.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||++|.+++.. |..    ...|.........+ ++..+.++|||   |..+..           ......
T Consensus        12 v~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~---G~~~~~-----------~~~~~~   71 (171)
T 1upt_A           12 ILGLDGAGKTTILYRLQVGE-VVT----TIPTIGFNVETVTY-KNLKFQVWDLG---GLTSIR-----------PYWRCY   71 (171)
T ss_dssp             EECSTTSSHHHHHHHHHHSS-CCC----CCCCSSEEEEEEEE-TTEEEEEEEEC---CCGGGG-----------GGGGGG
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCC----cCCcCccceEEEEE-CCEEEEEEECC---CChhhh-----------HHHHHH
Confidence            36999999999999999876 322    12244455566677 89999999999   874321           112234


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|++|||+++.++-+-.+  ...++..++...  .-.+++||+|+.|....
T Consensus        72 ~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           72 YSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             CTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             hccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence            578999999999874422221  223344433321  34589999999997654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.06  E-value=1.6e-09  Score=102.97  Aligned_cols=120  Identities=16%  Similarity=0.065  Sum_probs=79.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~l   80 (307)
                      .+|.|||||||++|.++|.......  ....|.......... ++..+.++|||   |+.+..... ..+..   ..+..
T Consensus       172 lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~~~~~~~~~~~~---~~~~~  242 (357)
T 2e87_A          172 IAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFED-GYFRYQIIDTP---GLLDRPISERNEIEK---QAILA  242 (357)
T ss_dssp             EECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEEE-TTEEEEEEECT---TTSSSCSTTSCHHHH---HHHHG
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEEe-cCceEEEEeCC---CccccchhhhhHHHH---HHHHH
Confidence            3799999999999999998733222  223466666666666 78999999999   986643211 11111   12222


Q ss_pred             cCCCCeEEEEEEeCCCC--CCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNR--FSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~R--fT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+|++|||+++.+.  ++.++ ...+..+...++   ...+|||+|+.|....
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~  295 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE  295 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh
Confidence            33468999999997632  34443 456667777664   4678999999997653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.06  E-value=1.7e-09  Score=88.75  Aligned_cols=109  Identities=10%  Similarity=-0.056  Sum_probs=71.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+++.. |...    ..|.........+ ++..+.++|||   |..+.           ........
T Consensus         6 ~G~~~~GKssl~~~l~~~~-~~~~----~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~-----------~~~~~~~~   65 (164)
T 1r8s_A            6 VGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEY-KNISFTVWDVG---GQDKI-----------RPLWRHYF   65 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHHC-SSCC----CCCSSCCEEEEEC-SSCEEEEEECC---CCGGG-----------HHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHcCC-cCcc----cCcCceeEEEEEE-CCEEEEEEEcC---CChhh-----------HHHHHHHh
Confidence            6999999999999999865 4322    1243444445566 78899999999   97431           11122345


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      ++.|++|||+++.++-+-  .....++..++...  .-..++||.|+.|....
T Consensus        66 ~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           66 QNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             TTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence            789999999998743221  12334455444332  23578999999997654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.06  E-value=6.2e-10  Score=107.76  Aligned_cols=117  Identities=11%  Similarity=0.076  Sum_probs=81.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.|||||||++|.|+|.++..+..  ..+|..+..+...+ +|.++.+||||   ||.+.......+...+...+   
T Consensus        77 ivG~PNvGKSTL~n~Lt~~~~~v~~~--pftT~~~~~g~~~~-~~~~i~l~D~p---Gl~~~a~~~~~~g~~~l~~i---  147 (376)
T 4a9a_A           77 FVGFPSVGKSTLLSKLTGTESEAAEY--EFTTLVTVPGVIRY-KGAKIQMLDLP---GIIDGAKDGRGRGKQVIAVA---  147 (376)
T ss_dssp             EECCCCHHHHHHHHHHHSBCCCGGGT--CSSCCCEEEEEEEE-TTEEEEEEECG---GGCCC-----CHHHHHHHHH---
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCC--CCceeeeeeEEEEe-CCcEEEEEeCC---CccCCchhhhHHHHHHHHHH---
Confidence            37999999999999999988655433  35788899999999 99999999999   99764322222223332222   


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccC-CeEEEEEecCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVF-DYMIVVFTRGDE  130 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~-~~~IVLfT~~D~  130 (307)
                       ...|++|+|+++....  .+...+..-...+|.... +..+|++++.|.
T Consensus       148 -~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          148 -RTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             -HHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             -HhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence             2368999999876222  344455555566776643 467888998885

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.05  E-value=1.7e-09  Score=91.58  Aligned_cols=139  Identities=12%  Similarity=-0.004  Sum_probs=85.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.......  ....|.........+ +|  ..+.++|||   |.......           ..
T Consensus        21 v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~   83 (196)
T 3tkl_A           21 LIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTA---GQERFRTI-----------TS   83 (196)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGCTT-----------HH
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECC---CcHhhhhh-----------HH
Confidence            4799999999999999987643322  223444455555667 77  478999999   85432211           11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++|||+++.++-+-+. ...+..+......  -..+|||+|+.|.....  .+       .......+....+
T Consensus        84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~--~~-------~~~~~~~~~~~~~  152 (196)
T 3tkl_A           84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKK--VV-------DYTTAKEFADSLG  152 (196)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTC--CS-------CHHHHHHHHHHTT
T ss_pred             HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccccccc--cc-------CHHHHHHHHHHcC
Confidence            22367899999999873222111 2233334333322  35789999999976541  11       1123566677777


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -.|+...-++
T Consensus       153 ~~~~~~Sa~~  162 (196)
T 3tkl_A          153 IPFLETSAKN  162 (196)
T ss_dssp             CCEEEECTTT
T ss_pred             CcEEEEeCCC
Confidence            7787776554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.05  E-value=3.3e-10  Score=93.16  Aligned_cols=139  Identities=10%  Similarity=-0.045  Sum_probs=79.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.++|..... ...+ ....+.......+ ++  ..+.++|||   |+.+...        +   ..
T Consensus        11 v~G~~~~GKSsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~Dt~---G~~~~~~--------~---~~   73 (170)
T 1z0j_A           11 LLGDTGVGKSSIMWRFVEDSFDP-NINP-TIGASFMTKTVQY-QNELHKFLIWDTA---GLERFRA--------L---AP   73 (170)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCT-TCCC-CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG--------G---TH
T ss_pred             EECcCCCCHHHHHHHHHcCCCCC-CCCC-ceeEEEEEEEEEE-CCeEEEEEEEcCC---Cchhhhc--------c---cH
Confidence            36999999999999999986332 2111 1112222333444 44  588999999   9743211        1   11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++|+|+++.++.+-++ ...+..+.....  ....++||.|+.|.....  .+       .......+....+
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~--~v-------~~~~~~~~~~~~~  142 (170)
T 1z0j_A           74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVR--EV-------MERDAKDYADSIH  142 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGC--CS-------CHHHHHHHHHHTT
T ss_pred             hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccccc--cc-------CHHHHHHHHHHcC
Confidence            12357899999999874332222 223333333211  234688889999976431  11       1123456666667


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      ..|+..+-++
T Consensus       143 ~~~~~~Sa~~  152 (170)
T 1z0j_A          143 AIFVETSAKN  152 (170)
T ss_dssp             CEEEECBTTT
T ss_pred             CEEEEEeCCC
Confidence            6666655544

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.04  E-value=1.5e-09  Score=92.41  Aligned_cols=139  Identities=12%  Similarity=-0.034  Sum_probs=58.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCc--eeEEEEEEEeCC----eEEEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTK--TCEMQRTMLKDG----QVVNVIDTPAIARLFDSSADFEFVSKEIV   75 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~--~c~~~~~~~~~G----r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~   75 (307)
                      +|.+||||||++|.+++.+ .|....   ..|.  ........+ +|    ..+.|+|||   |..+           ..
T Consensus        26 ~G~~~~GKssli~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~---G~~~-----------~~   87 (208)
T 2yc2_C           26 VGEATVGKSALISMFTSKGSKFLKDY---AMTSGVEVVVAPVTI-PDTTVSVELFLLDTA---GSDL-----------YK   87 (208)
T ss_dssp             C-------------------------------------CEEEEC-TTSSEEEEEEEEETT---TTHH-----------HH
T ss_pred             ECCCCCCHHHHHHHHHhCCCcccCCC---CCccceEEEEEEEEE-CCcccEEEEEEEECC---CcHH-----------HH
Confidence            7999999999999999873 244322   1222  233444556 64    489999999   8621           11


Q ss_pred             HHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc-ccCCeEEEEEecCCCCC-CCcccHHHhcCCCCCchHHH
Q 044972           76 KCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK-KVFDYMIVVFTRGDELE-DNDETLEDYLGPECPKPLKE  152 (307)
Q Consensus        76 kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~-~~~~sie~yl~~~~~~~Lk~  152 (307)
                      ........+.|++|||+++.++.+-+. ...+..+....+. .....+|||+|+.|... ..  .    +   ....++.
T Consensus        88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~--~----v---~~~~~~~  158 (208)
T 2yc2_C           88 EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH--Q----V---RLDMAQD  158 (208)
T ss_dssp             HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------C----C---CHHHHHH
T ss_pred             HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc--c----C---CHHHHHH
Confidence            223345678999999999873322121 2233333333221 12457999999999765 21  1    1   1234567


Q ss_pred             HHHhcCCeEEEEcCCC
Q 044972          153 ILQLCDNRRVLFDNKT  168 (307)
Q Consensus       153 Li~~Cg~R~~~fnNk~  168 (307)
                      +.+..+-.|+..+.++
T Consensus       159 ~~~~~~~~~~~~Sa~~  174 (208)
T 2yc2_C          159 WATTNTLDFFDVSANP  174 (208)
T ss_dssp             HHHHTTCEEEECCC--
T ss_pred             HHHHcCCEEEEeccCC
Confidence            7777776666555443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.03  E-value=3.6e-10  Score=92.95  Aligned_cols=139  Identities=14%  Similarity=0.041  Sum_probs=77.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.++|........+..+.+   ....... ++  ..+.++|||   |..+..    .+..       .
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~~~Dt~---G~~~~~----~~~~-------~   70 (172)
T 2erx_A            9 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDT---YRQVISC-DKSICTLQITDTT---GSHQFP----AMQR-------L   70 (172)
T ss_dssp             ECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE---EEEEEEE-TTEEEEEEEEECC---SCSSCH----HHHH-------H
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCCcccc---EEEEEEE-CCEEEEEEEEECC---CchhhH----HHHH-------H
Confidence            6999999999999999876322211111111   1122233 44  368999999   975421    1111       1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHH-HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEE-EGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~e-e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|+|+++.++.+-+ ....+..+....+...-.+++||+|+.|.....  .+.       ......+....+-
T Consensus        71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~--~v~-------~~~~~~~~~~~~~  141 (172)
T 2erx_A           71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR--EVQ-------SSEAEALARTWKC  141 (172)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC--CSC-------HHHHHHHHHHHTC
T ss_pred             hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc--ccC-------HHHHHHHHHHhCC
Confidence            123579999999987432222 233444555554433356799999999976431  110       1223455555665


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+-++
T Consensus       142 ~~~~~Sa~~  150 (172)
T 2erx_A          142 AFMETSAKL  150 (172)
T ss_dssp             EEEECBTTT
T ss_pred             eEEEecCCC
Confidence            665555443

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.03  E-value=1.9e-09  Score=92.64  Aligned_cols=137  Identities=7%  Similarity=-0.063  Sum_probs=82.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.++|.+... . ...+++.........+ +|  ..+.++|||   |..+....           ...
T Consensus        26 ~G~~~~GKSsli~~l~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~   88 (213)
T 3cph_A           26 IGDSGVGKSCLLVRFVEDKFNP-S-FITTIGIDFKIKTVDI-NGKKVKLQLWDTA---GQERFRTI-----------TTA   88 (213)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCCC-S-SSCCCSCCEEEEEEEE-TTEEEEEEEECCT---TGGGGTCC-----------CHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCc-c-cCCcccceEEEEEEEE-CCEEEEEEEEeCC---CcHHHHHH-----------HHH
Confidence            6999999999999999876322 1 1223444555556667 77  579999999   86432211           011


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++..+.+-+. ...+..+....+  ...++|||+|+.|..... .+         ......+....+-
T Consensus        89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~  156 (213)
T 3cph_A           89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRV-VT---------ADQGEALAKELGI  156 (213)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCC-SC---------HHHHHHHHHHHTC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc-cC---------HHHHHHHHHHcCC
Confidence            2357899999999863222111 223334444332  135789999999973221 11         1234556666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+....++
T Consensus       157 ~~~~~Sa~~  165 (213)
T 3cph_A          157 PFIESSAKN  165 (213)
T ss_dssp             CEEECBTTT
T ss_pred             EEEEEeCCC
Confidence            666555443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.03  E-value=2.7e-09  Score=87.11  Aligned_cols=138  Identities=13%  Similarity=0.017  Sum_probs=78.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |..+..    .+.   .    .
T Consensus        10 ~G~~~~GKssl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~D~~---G~~~~~----~~~---~----~   71 (168)
T 1u8z_A           10 VGSGGVGKSALTLQFMYDE-FVEDYE--PTKADSYRKKVVL-DGEEVQIDILDTA---GQEDYA----AIR---D----N   71 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---C---CH----HHH---H----H
T ss_pred             ECCCCCCHHHHHHHHHhCc-cCCCCC--CCcceEEEEEEEE-CCEEEEEEEEECC---CcchhH----HHH---H----H
Confidence            6999999999999999876 432221  2222222333455 664  78999999   964321    111   1    1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|+|+++.++-+-+. ...+..+..... ....+++||+|+.|.......+         ....+.+.+..+-
T Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  141 (168)
T 1u8z_A           72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRADQWNV  141 (168)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSC---------HHHHHHHHHHHTC
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccC---------HHHHHHHHHHcCC
Confidence            1235899999999873222111 222333333322 1245799999999976431111         1235566666676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+.++
T Consensus       142 ~~~~~Sa~~  150 (168)
T 1u8z_A          142 NYVETSAKT  150 (168)
T ss_dssp             EEEECCTTT
T ss_pred             eEEEeCCCC
Confidence            666655544

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.03  E-value=5e-09  Score=88.54  Aligned_cols=137  Identities=13%  Similarity=0.056  Sum_probs=77.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |....  .+.+.........+ +|.  .+.|+|||   |..+..           .....
T Consensus        27 vG~~~~GKSsli~~l~~~~-~~~~~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~-----------~~~~~   88 (190)
T 3con_A           27 VGAGGVGKSALTIQLIQNH-FVDEY--DPTIEDSYRKQVVI-DGETCLLDILDTA---GQEEYS-----------AMRDQ   88 (190)
T ss_dssp             ECSTTSSHHHHHHHHHHSS-CCSCC--CTTCCEEEEEEEEE-TTEEEEEEEEECC---C---------------------
T ss_pred             ECcCCCCHHHHHHHHHcCC-Ccccc--CCccceEEEEEEEE-CCEEEEEEEEECC---ChHHHH-----------HHHHH
Confidence            6999999999999999875 43221  12222333334455 665  48999999   853211           11223


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++++|+++.++-+-++ ...+..+..... ..-..++||+|+.|..... .+         ...++.+.+..+-
T Consensus        89 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~  157 (190)
T 3con_A           89 YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRT-VD---------TKQAHELAKSYGI  157 (190)
T ss_dssp             -CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-SC---------HHHHHHHHHHHTC
T ss_pred             hhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCccc-CC---------HHHHHHHHHHcCC
Confidence            4568999999999873322222 222333333322 1235789999999976531 11         1245666666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       158 ~~~~~Sa~~  166 (190)
T 3con_A          158 PFIETSAKT  166 (190)
T ss_dssp             CEEECCTTT
T ss_pred             eEEEEeCCC
Confidence            665554443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.03  E-value=9.4e-10  Score=91.20  Aligned_cols=138  Identities=12%  Similarity=0.013  Sum_probs=79.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++..... ... ...+.........+ ++  ..+.++|||   |..+..    .+   ..    .
T Consensus        21 ~G~~~~GKSsli~~l~~~~~~~-~~~-~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~----~~---~~----~   83 (179)
T 1z0f_A           21 IGDMGVGKSCLLHQFTEKKFMA-DCP-HTIGVEFGTRIIEV-SGQKIKLQIWDTA---GQERFR----AV---TR----S   83 (179)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCS-SCT-TSCCCCEEEEEEEE-TTEEEEEEEEECT---TGGGTC----HH---HH----H
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-CCC-CccceEEEEEEEEE-CCeEEEEEEEECC---CChHhh----hh---HH----H
Confidence            6999999999999999876432 211 12222233334445 55  478999999   854321    11   11    1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-++ ...+..+......  ...++||+|+.|.......+         ...++.+.+..+-
T Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  152 (179)
T 1z0f_A           84 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVT---------YEEAKQFAEENGL  152 (179)
T ss_dssp             HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSC---------HHHHHHHHHHTTC
T ss_pred             HhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccC---------HHHHHHHHHHcCC
Confidence            2246899999999874322222 1223334433222  35799999999975431111         1245666777676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       153 ~~~~~Sa~~  161 (179)
T 1z0f_A          153 LFLEASAKT  161 (179)
T ss_dssp             EEEECCTTT
T ss_pred             EEEEEeCCC
Confidence            666655443

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.03  E-value=1.4e-10  Score=117.20  Aligned_cols=126  Identities=21%  Similarity=0.288  Sum_probs=74.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEE-------------------------------------EEEEeC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQ-------------------------------------RTMLKD   45 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~-------------------------------------~~~~~~   45 (307)
                      +|.+||||||++|+|+|.+......+..+.|......                                     ...+ .
T Consensus        71 vG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~-~  149 (550)
T 2qpt_A           71 AGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQL-P  149 (550)
T ss_dssp             EEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEEC-C
T ss_pred             ECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEec-c
Confidence            6999999999999999998652222333444221100                                     0011 1


Q ss_pred             C---eEEEEEeCCCCCCCCCCCcCHHHHHHH--HHHHHHhcCCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHhhccccCC
Q 044972           46 G---QVVNVIDTPAIARLFDSSADFEFVSKE--IVKCIGMAKDGIHAVLIVFSVRN-RFSEEEGAAIHSLESLFGKKVFD  119 (307)
Q Consensus        46 G---r~v~VIDTP~~~Gl~Dt~~~~~~i~~e--I~kcv~ls~pGpha~LLVl~~~~-RfT~ee~~~l~~i~~~FG~~~~~  119 (307)
                      +   ..+++||||   |+.+....  .+.+.  +...+.....+.|++|+|+++.. .++.++...+..+..     .-.
T Consensus       150 ~~ll~~l~lIDTP---G~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~  219 (550)
T 2qpt_A          150 NQVLESISIIDTP---GILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-----HED  219 (550)
T ss_dssp             CHHHHHCEEEECC---CBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----CGG
T ss_pred             ccccCCEEEEECc---CCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----cCC
Confidence            1   479999999   99863211  11100  11111122346899999999974 367777777666543     235


Q ss_pred             eEEEEEecCCCCCCCcccHHHh
Q 044972          120 YMIVVFTRGDELEDNDETLEDY  141 (307)
Q Consensus       120 ~~IVLfT~~D~L~~~~~sie~y  141 (307)
                      .++||+|+.|.+..  ..+...
T Consensus       220 pvilVlNK~Dl~~~--~el~~~  239 (550)
T 2qpt_A          220 KIRVVLNKADMVET--QQLMRV  239 (550)
T ss_dssp             GEEEEEECGGGSCH--HHHHHH
T ss_pred             CEEEEEECCCccCH--HHHHHH
Confidence            69999999998865  344443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.02  E-value=3.1e-10  Score=96.26  Aligned_cols=114  Identities=10%  Similarity=0.012  Sum_probs=68.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|++||||||++|.++|...... ......|..     ..+ .+..+.++|||   |..+.......       .+...
T Consensus        53 vvG~~g~GKSsll~~l~~~~~~~~-~~~~~~~~~-----~~~-~~~~~~l~Dt~---G~~~~~~~~~~-------~~~~~  115 (193)
T 2ged_A           53 IAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSA-----ADY-DGSGVTLVDFP---GHVKLRYKLSD-------YLKTR  115 (193)
T ss_dssp             EECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEET---TCCBSSCCHHH-------HHHHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcc-cccCCCcee-----eee-cCCeEEEEECC---CCchHHHHHHH-------HHHhh
Confidence            369999999999999999763221 111111111     123 56789999999   98654322221       12222


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-----cCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-----VFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-----~~~~~IVLfT~~D~L~~  133 (307)
                      .+.+|++|||+++. .-...-.....++..+++..     ...+++||+|+.|....
T Consensus       116 ~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          116 AKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             GGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence            35689999999985 22222233445555554332     24679999999998765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.02  E-value=7.4e-10  Score=90.85  Aligned_cols=139  Identities=12%  Similarity=-0.033  Sum_probs=78.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC--CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD--GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~--Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++........+  ..+.........+ +  +..+.++|||   |..+...        +   ..
T Consensus        11 v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~D~~---G~~~~~~--------~---~~   73 (170)
T 1r2q_A           11 LLGESAVGKSSLVLRFVKGQFHEFQES--TIGAAFLTQTVCL-DDTTVKFEIWDTA---GQERYHS--------L---AP   73 (170)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCTTCCC--CSSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG--------G---HH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCC--ccceEEEEEEEEE-CCEEEEEEEEeCC---CcHHhhh--------h---hH
Confidence            369999999999999998753322111  2222222333344 4  4589999999   8643211        1   11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++|||+++.++-+-+. ...+..+....++  ...++||.|+.|.......+         ......+....+
T Consensus        74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~  142 (170)
T 1r2q_A           74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVD---------FQEAQSYADDNS  142 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTT
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccC---------HHHHHHHHHHcC
Confidence            22367899999999873322111 2223333333222  34678888999975431011         123456666666


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -.|+....++
T Consensus       143 ~~~~~~Sa~~  152 (170)
T 1r2q_A          143 LLFMETSAKT  152 (170)
T ss_dssp             CEEEECCTTT
T ss_pred             CeEEEEeCCC
Confidence            6666555544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.02  E-value=2.7e-09  Score=89.51  Aligned_cols=138  Identities=10%  Similarity=-0.050  Sum_probs=82.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.......  ...++.........+ +|  ..+.++|||   |..+.           ......
T Consensus        16 ~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~-----------~~~~~~   78 (186)
T 2bme_A           16 IGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINV-GGKYVKLQIWDTA---GQERF-----------RSVTRS   78 (186)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEE-TTEEEEEEEEEEC---CSGGG-----------HHHHHT
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEeCC---CcHHH-----------HHHHHH
Confidence            699999999999999987633221  122333344445556 66  588999999   85321           112334


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-+. ...+..+.....  ....++||+|+.|.......+         ......+....+-
T Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  147 (186)
T 2bme_A           79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVT---------FLEASRFAQENEL  147 (186)
T ss_dssp             TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred             HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccC---------HHHHHHHHHHcCC
Confidence            5678999999999873222111 122333333322  245789999999975431011         1234556666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+....++
T Consensus       148 ~~~~~Sa~~  156 (186)
T 2bme_A          148 MFLETSALT  156 (186)
T ss_dssp             EEEECCTTT
T ss_pred             EEEEecCCC
Confidence            666555443

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.02  E-value=2.5e-09  Score=90.72  Aligned_cols=112  Identities=11%  Similarity=-0.016  Sum_probs=70.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||++|.+++........   ..|.......... .+..+.++|||   |..+..           ......
T Consensus        22 v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~-----------~~~~~~   83 (199)
T 4bas_A           22 MCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFEK-GRVAFTVFDMG---GAKKFR-----------GLWETY   83 (199)
T ss_dssp             EECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEEE-TTEEEEEEEEC---CSGGGG-----------GGGGGG
T ss_pred             EECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEEe-CCEEEEEEECC---CCHhHH-----------HHHHHH
Confidence            36999999999999999987433122   2233344444556 88999999999   874321           111234


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc---------cCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK---------VFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~---------~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|++|||+++.++-+-+  .+..++..++...         .-..+|||.|+.|....
T Consensus        84 ~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           84 YDNIDAVIFVVDSSDHLRLC--VVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             CTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             HhcCCEEEEEEECCcHHHHH--HHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            57899999999987432211  1223333333221         14579999999998765

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.02  E-value=1.1e-10  Score=116.21  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=78.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCC-CCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLF-DSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~-Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.|||||||++|.++|.+. +.+.  ..+.|.........+ +|..++++|||   |+. ++....+...  +.+ ...
T Consensus       249 vG~pnvGKSSLln~L~~~~~a~vs~--~~gTT~d~~~~~i~~-~g~~~~l~DTa---G~~~~~~~~ve~~g--i~~-~~~  319 (482)
T 1xzp_A          249 VGKPNVGKSTLLNRLLNEDRAIVTD--IPGTTRDVISEEIVI-RGILFRIVDTA---GVRSETNDLVERLG--IER-TLQ  319 (482)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCC--SSCCSSCSCCEEEEE-TTEEEEEEESS---CCCSSCCTTCCCCC--HHH-HHH
T ss_pred             ECcCCCcHHHHHHHHHCCCCCccCC--CCCeeeeeEEEEEec-CCeEEEEEECC---CccccchhhHHHHH--HHH-HHH
Confidence            79999999999999999864 3332  234566676677788 99999999999   987 5432111100  000 001


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|+|+++.+..+.++...++.+    .   ...+|||+|+.|...
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~  364 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE  364 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred             HhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence            12358999999998767787776554432    1   457999999999754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.02  E-value=3.7e-09  Score=86.64  Aligned_cols=137  Identities=13%  Similarity=-0.029  Sum_probs=80.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |.... ..+++.........+ ++.  .+.++|||   |..+....           ...
T Consensus        11 ~G~~~~GKssl~~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~   73 (168)
T 1z2a_A           11 VGNGAVGKSSMIQRYCKGI-FTKDY-KKTIGVDFLERQIQV-NDEDVRLMLWDTA---GQEEFDAI-----------TKA   73 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHCC-CCCCS-SCCCSSSEEEEEEEE-TTEEEEEEEECCT---TGGGTTCC-----------CHH
T ss_pred             ECcCCCCHHHHHHHHHcCC-CCCCC-CCceEEEEEEEEEEE-CCEEEEEEEEcCC---CcHhHHHH-----------HHH
Confidence            6999999999999999875 32221 122333444445555 654  88999999   85432211           011


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|+|+++.++.+-++ ...+..+....   ...+++||+|+.|.....  .    +   ....++.+.+..+-
T Consensus        74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~  141 (168)
T 1z2a_A           74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDS--C----I---KNEEAEGLAKRLKL  141 (168)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGC--S----S---CHHHHHHHHHHHTC
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCccc--c----c---CHHHHHHHHHHcCC
Confidence            2357899999999873222111 12233333322   346799999999976431  1    1   12235666677776


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+-++
T Consensus       142 ~~~~~Sa~~  150 (168)
T 1z2a_A          142 RFYRTSVKE  150 (168)
T ss_dssp             EEEECBTTT
T ss_pred             eEEEEecCC
Confidence            666555443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.01  E-value=3.4e-09  Score=86.13  Aligned_cols=137  Identities=12%  Similarity=0.083  Sum_probs=79.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....  +.+.........+ ++.  .+.++|||   |..+..    .+...       
T Consensus         9 ~G~~~~GKssl~~~l~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~D~~---G~~~~~----~~~~~-------   70 (166)
T 2ce2_X            9 VGAGGVGKSALTIQLIQNH-FVDECD--PTIEDSYRKQVVI-DGETCLLDILDTA---GQEEYS----AMRDQ-------   70 (166)
T ss_dssp             EESTTSSHHHHHHHHHHSS-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CCSSCC----HHHHH-------
T ss_pred             ECCCCCCHHHHHHHHHhCc-CccccC--CccceEEEEEEEE-CCEEEEEEEEECC---Cchhhh----HHHHH-------
Confidence            6999999999999999875 332221  2222222333445 654  57889999   965432    11111       


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++++|+++.++-+-++ ...+..+..... ..-.+++||+|+.|..... .         ....++.+.+..+-
T Consensus        71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~-~---------~~~~~~~~~~~~~~  139 (166)
T 2ce2_X           71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAART-V---------ESRQAQDLARSYGI  139 (166)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-S---------CHHHHHHHHHHHTC
T ss_pred             hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcc-c---------CHHHHHHHHHHcCC
Confidence            1235789999999863322121 222333333322 2246789999999976531 1         12235566666676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       140 ~~~~~Sa~~  148 (166)
T 2ce2_X          140 PYIETSAKT  148 (166)
T ss_dssp             CEEEECTTT
T ss_pred             eEEEecCCC
Confidence            666665544

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.01  E-value=1.6e-09  Score=92.79  Aligned_cols=138  Identities=8%  Similarity=-0.058  Sum_probs=80.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++........+  .++.+.......+ ++  ..+.++|||   |..+.           ......
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~-----------~~~~~~   76 (203)
T 1zbd_A           14 IGNSSVGKTSFLFRYADDSFTPAFVS--TVGIDFKVKTIYR-NDKRIKLQIWDTA---GLERY-----------RTITTA   76 (203)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCCSCCCC--CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGG-----------HHHHHT
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcCC--ccceeEEEEEEEE-CCeEEEEEEEECC---Cchhh-----------cchHHH
Confidence            69999999999999999863322111  2222233333444 54  488999999   97421           111233


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++-+-+. ...+..+....  .....++||+|+.|.....  .+       ....++.+.+.++-
T Consensus        77 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~~~~  145 (203)
T 1zbd_A           77 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDER--VV-------SSERGRQLADHLGF  145 (203)
T ss_dssp             TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSC--CS-------CHHHHHHHHHHHTC
T ss_pred             hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCccc--cc-------CHHHHHHHHHHCCC
Confidence            4568899999999873322111 11222232221  1245789999999976531  11       11245666677776


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       146 ~~~~~Sa~~  154 (203)
T 1zbd_A          146 EFFEASAKD  154 (203)
T ss_dssp             EEEECBTTT
T ss_pred             eEEEEECCC
Confidence            666555443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.01  E-value=8.8e-09  Score=88.43  Aligned_cols=138  Identities=12%  Similarity=-0.028  Sum_probs=82.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++..... .. ...++.........+ +|.  .+.++|||   |..+....           ...
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~   76 (206)
T 2bcg_Y           14 IGNSGVGKSCLLLRFSDDTYTN-DY-ISTIGVDFKIKTVEL-DGKTVKLQIWDTA---GQERFRTI-----------TSS   76 (206)
T ss_dssp             EESTTSSHHHHHHHHHHCCCCT-TC-CCSSCCCEEEEEEEE-TTEEEEEEEECCT---TTTTTTCC-----------CGG
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CC-CCcccceeEEEEEEE-CCEEEEEEEEeCC---ChHHHHHH-----------HHH
Confidence            6999999999999999876432 21 223333444445566 764  89999999   86442211           123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-+. ...+..+....+  ....++||+|+.|.......+         ......+....+-
T Consensus        77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  145 (206)
T 2bcg_Y           77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVE---------YDVAKEFADANKM  145 (206)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSC---------HHHHHHHHHHTTC
T ss_pred             hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccC---------HHHHHHHHHHcCC
Confidence            3468899999999873322222 112333333322  245789999999986541111         1234556666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+....++
T Consensus       146 ~~~~~Sa~~  154 (206)
T 2bcg_Y          146 PFLETSALD  154 (206)
T ss_dssp             CEEECCTTT
T ss_pred             eEEEEeCCC
Confidence            666555443

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.00  E-value=1.8e-09  Score=103.67  Aligned_cols=121  Identities=12%  Similarity=-0.009  Sum_probs=72.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||++|.|+|.....+..  ...|.........+ +|..+.++|||   |+... .+...+ +.+.. .....
T Consensus       185 vG~~naGKSTLln~L~~~~~~~~~~--~~~T~d~~~~~i~~-~g~~v~l~DT~---G~i~~-lp~~lv-e~f~~-tl~~~  255 (364)
T 2qtf_A          185 VGYTNSGKTSLFNSLTGLTQKVDTK--LFTTMSPKRYAIPI-NNRKIMLVDTV---GFIRG-IPPQIV-DAFFV-TLSEA  255 (364)
T ss_dssp             ECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECC---CBCSS-CCGGGH-HHHHH-HHHGG
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCC--cccccCCEEEEEEE-CCEEEEEEeCC---Cchhc-CCHHHH-HHHHH-HHHHH
Confidence            6999999999999999987533222  23455555667778 89999999999   97431 122111 12222 22234


Q ss_pred             CCCeEEEEEEeCCCCC--CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRF--SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~Rf--T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...|++|+|+++....  ..+....+..+...+|.. -..+|+|+++.|.+..
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~-~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVS-GKPILVTLNKIDKING  307 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC-SCCEEEEEECGGGCCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC-CCCEEEEEECCCCCCc
Confidence            5789999999986333  122222233333344432 3469999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.00  E-value=2.1e-09  Score=88.28  Aligned_cols=137  Identities=7%  Similarity=-0.046  Sum_probs=78.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|+++|.+.....  ..+.+.........+ +|  ..+.++|||   |..+.....           ..
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~---G~~~~~~~~-----------~~   71 (170)
T 1g16_A            9 IGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQIWDTA---GQERFRTIT-----------TA   71 (170)
T ss_dssp             EESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCT---TGGGTSCCC-----------HH
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEeCC---CChhhhhhH-----------HH
Confidence            699999999999999987632211  223333444445556 65  378899999   864322110           11


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-+. ...+..+....+.  ...++||+|+.|..... .+         ......+.+..+-
T Consensus        72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~  139 (170)
T 1g16_A           72 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRV-VT---------ADQGEALAKELGI  139 (170)
T ss_dssp             HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTCC-SC---------HHHHHHHHHHHTC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCcCc-cC---------HHHHHHHHHHcCC
Confidence            2357899999999873322111 2233334443322  45789999999973321 11         1234566666676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+.++
T Consensus       140 ~~~~~Sa~~  148 (170)
T 1g16_A          140 PFIESSAKN  148 (170)
T ss_dssp             CEEECBTTT
T ss_pred             eEEEEECCC
Confidence            666665544

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.00  E-value=3.8e-09  Score=89.77  Aligned_cols=110  Identities=15%  Similarity=0.037  Sum_probs=70.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+++.+ |....   ..|.........+ .+..+.++|||   |..+       .....    ....
T Consensus        28 ~G~~~~GKSsli~~l~~~~-~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~---G~~~-------~~~~~----~~~~   88 (188)
T 1zd9_A           28 VGLQYSGKTTFVNVIASGQ-FNEDM---IPTVGFNMRKITK-GNVTIKLWDIG---GQPR-------FRSMW----ERYC   88 (188)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCCSC---CCCCSEEEEEEEE-TTEEEEEEEEC---CSHH-------HHTTH----HHHH
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCCcc---CCCCceeEEEEEe-CCEEEEEEECC---CCHh-------HHHHH----HHHH
Confidence            6999999999999999876 32221   2233344444566 88999999999   8532       11111    1223


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|||+++.++-+-  .....++..++..  .....+|||+|+.|....
T Consensus        89 ~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           89 RGVSAIVYMVDAADQEKI--EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             TTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence            678999999998733221  2233444444432  134579999999997654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.99  E-value=2e-09  Score=90.10  Aligned_cols=109  Identities=12%  Similarity=-0.054  Sum_probs=69.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+++.+...  ..   .|.........+ ++..+.++|||   |..+....           .....
T Consensus        24 ~G~~~~GKssli~~l~~~~~~~--~~---~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~-----------~~~~~   83 (183)
T 1moz_A           24 LGLDGAGKTTILYRLQIGEVVT--TK---PTIGFNVETLSY-KNLKLNVWDLG---GQTSIRPY-----------WRCYY   83 (183)
T ss_dssp             EEETTSSHHHHHHHTCCSEEEE--EC---SSTTCCEEEEEE-TTEEEEEEEEC-------CCTT-----------GGGTT
T ss_pred             ECCCCCCHHHHHHHHhcCCcCc--cC---CcCccceEEEEE-CCEEEEEEECC---CCHhHHHH-----------HHHHh
Confidence            6999999999999999876422  11   122233445567 88999999999   87543211           12345


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|+|+++.++-+-+  ....++..+...  .....++||.|+.|....
T Consensus        84 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           84 ADTAAVIFVVDSTDKDRMS--TASKELHLMLQEEELQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             TTEEEEEEEEETTCTTTHH--HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCHHHHH--HHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence            6899999999987443322  233445554433  234679999999997653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.99  E-value=8.9e-10  Score=93.01  Aligned_cols=109  Identities=9%  Similarity=-0.044  Sum_probs=70.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+++.+..... +    |.........+ ++..+.++|||   |..+...           ......
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~-----------~~~~~~   86 (181)
T 2h17_A           27 VGLDNAGKTTILYQFSMNEVVHTS-P----TIGSNVEEIVI-NNTRFLMWDIG---GQESLRS-----------SWNTYY   86 (181)
T ss_dssp             EEETTSSHHHHHHHHHTTSCEEEE-C----CSSSSCEEEEE-TTEEEEEEEES---SSGGGTC-----------GGGGGG
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccC-C----cCceeeEEEEE-CCEEEEEEECC---CCHhHHH-----------HHHHHh
Confidence            699999999999999998742211 1    11222344567 89999999999   8743211           012334


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|||+++.++-+-++  +..++..+...  ..-..+|||.|+.|....
T Consensus        87 ~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           87 TNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             TTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence            68899999999875433222  22334444332  134679999999997653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.98  E-value=1.8e-09  Score=89.41  Aligned_cols=138  Identities=10%  Similarity=-0.035  Sum_probs=81.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++..... .. ...++.........+ +|.  .+.++|||   |..+...    +   ..    .
T Consensus        20 ~G~~~~GKssli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~---G~~~~~~----~---~~----~   82 (179)
T 2y8e_A           20 LGEQSVGKTSLITRFMYDSFDN-TY-QATIGIDFLSKTMYL-EDRTVRLQLWDTA---GQERFRS----L---IP----S   82 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCS-SC-CCCCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG----G---SH----H
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-CC-CCceeeEEEEEEEEE-CCeEEEEEEEECC---CcHHHHH----H---HH----H
Confidence            6999999999999999875332 21 223343444555566 664  78999999   8543211    0   11    1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHH-HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEE-EGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~e-e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-+ -...+..+....+  ....++||+|+.|.......+         ......+....+-
T Consensus        83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  151 (179)
T 2y8e_A           83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVS---------TEEGERKAKELNV  151 (179)
T ss_dssp             HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSC---------HHHHHHHHHHHTC
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCC---------HHHHHHHHHHcCC
Confidence            124689999999986322211 1222333333322  235789999999976431011         1234455666676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+....++
T Consensus       152 ~~~~~Sa~~  160 (179)
T 2y8e_A          152 MFIETSAKA  160 (179)
T ss_dssp             EEEEEBTTT
T ss_pred             eEEEEeCCC
Confidence            777766554

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.98  E-value=4.3e-09  Score=89.68  Aligned_cols=138  Identities=13%  Similarity=0.027  Sum_probs=80.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |..+..    .+..       .
T Consensus        20 ~G~~~~GKSsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~----~~~~-------~   81 (206)
T 2bov_A           20 VGSGGVGKSALTLQFMYDE-FVEDYE--PTKADSYRKKVVL-DGEEVQIDILDTA---GQEDYA----AIRD-------N   81 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCTTCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTCCH----HHHH-------H
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCCC--CccceEEEEEEEE-CCEEEEEEEEcCC---ChhhhH----HHHH-------H
Confidence            6999999999999999876 433222  2222222344456 664  78999999   965421    1111       1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++-+-+. ...+..+..... ..-..+|||+|+.|.......+         ...+..+.+..+-
T Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  151 (206)
T 2bov_A           82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRAEQWNV  151 (206)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSC---------HHHHHHHHHHHTC
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCcccccccc---------HHHHHHHHHHhCC
Confidence            1235899999999873221111 122233333322 1245789999999976431111         1235566666677


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+.++
T Consensus       152 ~~~~~Sa~~  160 (206)
T 2bov_A          152 NYVETSAKT  160 (206)
T ss_dssp             EEEEECTTT
T ss_pred             eEEEEeCCC
Confidence            777766654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.98  E-value=4.8e-09  Score=88.92  Aligned_cols=138  Identities=9%  Similarity=-0.085  Sum_probs=81.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++........+  .++.+.......+ ++  ..+.++|||   |..+....           ...
T Consensus        28 vG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~   90 (189)
T 2gf9_A           28 IGNSSVGKTSFLFRYADDSFTPAFVS--TVGIDFKVKTVYR-HDKRIKLQIWDTA---GQERYRTI-----------TTA   90 (189)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCSCCC--CCCCEEEEEEEEE-TTEEEEEEEEECC---SCCSSCCS-----------GGG
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCcCC--ceeEEEEEEEEEE-CCeEEEEEEEeCC---CcHHHhhh-----------HHH
Confidence            69999999999999998763322111  2222333333344 44  488999999   86443211           123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++-+-+. ...+..+....  .....++||+|+.|.....  .    +   ....++.+.+..+-
T Consensus        91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~  159 (189)
T 2gf9_A           91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDER--V----V---PAEDGRRLADDLGF  159 (189)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHTC
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccccccc--C----C---CHHHHHHHHHHcCC
Confidence            4568999999999863322211 12223333321  1245789999999976431  1    1   11245667777776


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       160 ~~~~~Sa~~  168 (189)
T 2gf9_A          160 EFFEASAKE  168 (189)
T ss_dssp             EEEECBTTT
T ss_pred             eEEEEECCC
Confidence            676665544

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.98  E-value=4.1e-09  Score=89.44  Aligned_cols=138  Identities=12%  Similarity=-0.015  Sum_probs=79.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++........  .+++.........+ ++  ..+.++|||   |..+.....           ..
T Consensus        31 ~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~-----------~~   93 (193)
T 2oil_A           31 IGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVML-GTAAVKAQIWDTA---GLERYRAIT-----------SA   93 (193)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEE-TTEEEEEEEEEES---CCCTTCTTH-----------HH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEeCC---Cchhhhhhh-----------HH
Confidence            6999999999999999876432211  12222222223333 33  578999999   975532111           11


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-.  .+..++..+... .....++||+|+.|........         ....+.+....+-
T Consensus        94 ~~~~~d~vi~v~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  162 (193)
T 2oil_A           94 YYRGAVGALLVFDLTKHQTYA--VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP---------TEEARMFAENNGL  162 (193)
T ss_dssp             HHTTCCEEEEEEETTCHHHHH--THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred             HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC---------HHHHHHHHHHcCC
Confidence            235789999999987332211  122333333222 1345789999999976431011         1234566666676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       163 ~~~~~Sa~~  171 (193)
T 2oil_A          163 LFLETSALD  171 (193)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEEeCCC
Confidence            676665543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.97  E-value=2.7e-09  Score=104.91  Aligned_cols=147  Identities=11%  Similarity=0.088  Sum_probs=76.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCCcCHH----HHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSSADFE----FVSKEI   74 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~~~~~----~i~~eI   74 (307)
                      .+|++||||||++|+|+|...........+.+.........+. .+  ..++|+|||   |+.+. .+..    .+...|
T Consensus        47 LvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~---~~g~~-~~~~~~~~~i~~~i  122 (427)
T 2qag_B           47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTV---GFGDQ-INKEDSYKPIVEFI  122 (427)
T ss_dssp             EECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEE---CCCC--CCHHHHSHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhh---hhhhc-cccchhhhHHHHHH
Confidence            4799999999999999998643211111111111111111121 22  278999999   88763 2221    122222


Q ss_pred             H----HHHHhc---------CC--CCeE-EEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccH
Q 044972           75 V----KCIGMA---------KD--GIHA-VLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETL  138 (307)
Q Consensus        75 ~----kcv~ls---------~p--Gpha-~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~si  138 (307)
                      .    ..+...         .+  .+|+ ++||++.+..++..|..+++.|.      ...++|+|++.+|.|..  ..+
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~--~E~  194 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADAISK--SEL  194 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGGSCH--HHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhccch--HHH
Confidence            2    222111         12  2455 66677776678888876666553      35689999999999976  334


Q ss_pred             HHhcCCCCCchHHHHHHhcCCeEEEEc
Q 044972          139 EDYLGPECPKPLKEILQLCDNRRVLFD  165 (307)
Q Consensus       139 e~yl~~~~~~~Lk~Li~~Cg~R~~~fn  165 (307)
                      ..+..     .+++-+...|-.++.|.
T Consensus       195 ~~l~~-----~I~~~L~~~gi~I~~is  216 (427)
T 2qag_B          195 TKFKI-----KITSELVSNGVQIYQFP  216 (427)
T ss_dssp             HHHHH-----HHHHHHBTTBCCCCCCC
T ss_pred             HHHHH-----HHHHHHHHcCCcEEecC
Confidence            44332     23443444455555554

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.97  E-value=2.7e-09  Score=89.97  Aligned_cols=137  Identities=12%  Similarity=-0.033  Sum_probs=78.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |..... ...+.........+ ++  ..+.++|||   |..+.....           ..
T Consensus        21 ~G~~~~GKssli~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~-----------~~   83 (195)
T 1x3s_A           21 IGESGVGKSSLLLRFTDDT-FDPELA-ATIGVDFKVKTISV-DGNKAKLAIWDTA---GQERFRTLT-----------PS   83 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCTTCC-CCCSEEEEEEEEEE-TTEEEEEEEEEEC---SSGGGCCSH-----------HH
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCccCC-CccceEEEEEEEEE-CCeEEEEEEEeCC---Cchhhhhhh-----------HH
Confidence            6999999999999999876 332211 12222333334445 55  578899999   864322111           12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ...+.|++|||+++.++.+-.  .+..++..+...  .....++||+|+.|..... .+         ......+.+..+
T Consensus        84 ~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~  151 (195)
T 1x3s_A           84 YYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VD---------RNEGLKFARKHS  151 (195)
T ss_dssp             HHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SC---------HHHHHHHHHHTT
T ss_pred             HhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cC---------HHHHHHHHHHcC
Confidence            235789999999986332211  122333333221  1245789999999974321 11         123456666667


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -.|+....++
T Consensus       152 ~~~~~~Sa~~  161 (195)
T 1x3s_A          152 MLFIEASAKT  161 (195)
T ss_dssp             CEEEECCTTT
T ss_pred             CEEEEecCCC
Confidence            6666655544

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.97  E-value=7.2e-09  Score=86.39  Aligned_cols=138  Identities=13%  Similarity=0.035  Sum_probs=80.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....  +.+.........+ ++.  .+.++|||   |..+..    .+..   .    
T Consensus        24 ~G~~~~GKSsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~----~~~~---~----   85 (187)
T 2a9k_A           24 VGSGGVGKSALTLQFMYDE-FVEDYE--PTKADSYRKKVVL-DGEEVQIDILDTA---GQEDYA----AIRD---N----   85 (187)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCCSCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTCCH----HHHH---H----
T ss_pred             ECCCCCCHHHHHHHHhhCC-CCCcCC--CccceEEEEEEEE-CCEEEEEEEEECC---CCcccH----HHHH---H----
Confidence            6999999999999999876 433221  2222222333455 664  78999999   965421    1111   1    


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|+|+++.++-+-+. ...+..+..... .....++||+|+.|.......+         ...++.+.+..+-
T Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~  155 (187)
T 2a9k_A           86 YFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVS---------VEEAKNRAEQWNV  155 (187)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccC---------HHHHHHHHHHcCC
Confidence            1235899999999873222111 222333443332 1245789999999975431011         1245666777777


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+.++
T Consensus       156 ~~~~~Sa~~  164 (187)
T 2a9k_A          156 NYVETSAKT  164 (187)
T ss_dssp             EEEECCTTT
T ss_pred             eEEEeCCCC
Confidence            776666554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.96  E-value=1.5e-09  Score=92.57  Aligned_cols=139  Identities=12%  Similarity=-0.076  Sum_probs=79.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|.+||||||++|.+++........+..+.|  .......+. .+..+.++|||   |..+...        +   ....
T Consensus        29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~---G~~~~~~--------~---~~~~   92 (192)
T 2fg5_A           29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGAS--FMTKTVPCGNELHKFLIWDTA---GQERFHS--------L---APMY   92 (192)
T ss_dssp             EECTTSSHHHHHHHHHHCCCCTTCCCCSSEE--EEEEEEECSSSEEEEEEEEEC---CSGGGGG--------G---THHH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCcCCCccee--EEEEEEEeCCEEEEEEEEcCC---CchhhHh--------h---hHHh
Confidence            6999999999999999876322111111222  222223331 34589999999   8543211        0   1112


Q ss_pred             CCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972           82 KDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR  160 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R  160 (307)
                      ..+.|++|||+++.++-+-+. ...+..+.....  ....++||+|+.|.......+         ...++.+.+..+-.
T Consensus        93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~---------~~~~~~~~~~~~~~  161 (192)
T 2fg5_A           93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVP---------LKDAKEYAESIGAI  161 (192)
T ss_dssp             HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHTTTCE
T ss_pred             hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccC---------HHHHHHHHHHcCCE
Confidence            357899999999873322222 222333333221  245789999999975421011         13456677777777


Q ss_pred             EEEEcCCC
Q 044972          161 RVLFDNKT  168 (307)
Q Consensus       161 ~~~fnNk~  168 (307)
                      |+....++
T Consensus       162 ~~~~Sa~~  169 (192)
T 2fg5_A          162 VVETSAKN  169 (192)
T ss_dssp             EEECBTTT
T ss_pred             EEEEeCCC
Confidence            76666554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.96  E-value=3e-09  Score=88.38  Aligned_cols=114  Identities=13%  Similarity=-0.007  Sum_probs=69.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.+++.. |.... ....+.........+ +|.  .+.++|||   |...           ......
T Consensus        12 v~G~~~~GKSsli~~l~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~-----------~~~~~~   74 (177)
T 1wms_A           12 LLGDGGVGKSSLMNRYVTNK-FDTQL-FHTIGVEFLNKDLEV-DGHFVTMQIWDTA---GQER-----------FRSLRT   74 (177)
T ss_dssp             EECCTTSSHHHHHHHHHHSC-CCC-----CCSEEEEEEEEEE-TTEEEEEEEEECC---CCGG-----------GHHHHG
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCCC-CCceeeeEEEEEEEE-CCEEEEEEEEeCC---Cchh-----------hhhhHH
Confidence            37999999999999999875 32221 112233333445556 774  89999999   8532           111233


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|+|+++.++-+-+. ...+..+....+..  ...+++||.|+.|...
T Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  130 (177)
T 1wms_A           75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  130 (177)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence            45678999999999873322221 22333344333321  3357899999999763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.96  E-value=8.2e-09  Score=89.95  Aligned_cols=144  Identities=14%  Similarity=0.014  Sum_probs=74.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |..+..           ....
T Consensus        39 vvG~~~vGKSsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~~~-----------~~~~  100 (214)
T 2j1l_A           39 LVGDGGCGKTSLLMVFADGA-FPESYT--PTVFERYMVNLQV-KGKPVHLHIWDTA---GQDDYD-----------RLRP  100 (214)
T ss_dssp             EEECTTSSHHHHHHHHHC--------C--CCCCEEEEEEEEE-TTEEEEEEEEEC-------------------------
T ss_pred             EECcCCCCHHHHHHHHHcCC-CCCCCC--CccceeEEEEEEE-CCEEEEEEEEECC---Cchhhh-----------HHHH
Confidence            36999999999999999876 432221  2122222334455 665  78999999   853211           1112


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhc-----CCCCCchHHH
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYL-----GPECPKPLKE  152 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl-----~~~~~~~Lk~  152 (307)
                      ....+.|++|||+++.++-+-+..  ..+..+....   .-..+|||.|+.|....  ..+.+.+     ..-.......
T Consensus       101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~  175 (214)
T 2j1l_A          101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHRGQE  175 (214)
T ss_dssp             ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc--chhhhhhcccccCcccHHHHHH
Confidence            235689999999998732221111  1233333322   23578999999998765  3332222     1101234567


Q ss_pred             HHHhcCC-eEEEEcCCC
Q 044972          153 ILQLCDN-RRVLFDNKT  168 (307)
Q Consensus       153 Li~~Cg~-R~~~fnNk~  168 (307)
                      +.+..+. .|+...-++
T Consensus       176 ~~~~~~~~~~~~~SA~~  192 (214)
T 2j1l_A          176 MARSVGAVAYLECSARL  192 (214)
T ss_dssp             HHHHTTCSEEEECBTTT
T ss_pred             HHHhcCCCEEEEecCCC
Confidence            7777776 666655543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.95  E-value=5.5e-09  Score=89.23  Aligned_cols=111  Identities=15%  Similarity=0.000  Sum_probs=66.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.|+|||   |..+....           ..
T Consensus        25 ~~G~~~~GKssl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~   86 (201)
T 2q3h_A           25 LVGDGAVGKTSLVVSYTTNG-YPTEYI--PTAFDNFSAVVSV-DGRPVRLQLCDTA---GQDEFDKL-----------RP   86 (201)
T ss_dssp             EECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECC---CSTTCSSS-----------GG
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCCCCC--CcccceeEEEEEE-CCEEEEEEEEECC---CCHHHHHH-----------hH
Confidence            36999999999999999876 654332  2222333334556 776  56699999   97543211           12


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|||+++.++-+-++.  ..+..+....+   ...+|||.|+.|....
T Consensus        87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED  139 (201)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc
Confidence            345689999999998743222221  23333443322   4578999999998754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.95  E-value=5.7e-09  Score=88.28  Aligned_cols=109  Identities=13%  Similarity=-0.014  Sum_probs=72.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+++.. |....    .|.........+ ++..+.++|||   |..+....           .....
T Consensus        28 ~G~~~~GKssli~~l~~~~-~~~~~----~t~~~~~~~~~~-~~~~~~~~Dt~---G~~~~~~~-----------~~~~~   87 (189)
T 2x77_A           28 LGLDNAGKTSILYRLHLGD-VVTTV----PTVGVNLETLQY-KNISFEVWDLG---GQTGVRPY-----------WRCYF   87 (189)
T ss_dssp             EEETTSSHHHHHHHTCCSC-CEEEC----SSTTCCEEEEEE-TTEEEEEEEEC---CSSSSCCC-----------CSSSS
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCCcC----CCCceEEEEEEE-CCEEEEEEECC---CCHhHHHH-----------HHHHh
Confidence            6999999999999998876 43221    233344555667 89999999999   87543211           11235


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .++|++|+|+++.++-+-++  +..++..++...  .-..++||+|+.|....
T Consensus        88 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           88 SDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             TTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred             hcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence            68999999999874422222  233444444332  24579999999998654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.95  E-value=8.3e-09  Score=87.28  Aligned_cols=109  Identities=9%  Similarity=-0.030  Sum_probs=68.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.+++.+.... .+    |.........+ ++..+.++|||   |..+.....           ....
T Consensus        22 ~G~~~~GKssl~~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~~-----------~~~~   81 (187)
T 1zj6_A           22 VGLDNAGKTTILYQFSMNEVVHT-SP----TIGSNVEEIVI-NNTRFLMWDIG---GQESLRSSW-----------NTYY   81 (187)
T ss_dssp             EESTTSSHHHHHHHHHTTSCEEE-EC----CSCSSCEEEEE-TTEEEEEEECC---C----CGGG-----------HHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcC-cC----CCccceEEEEE-CCEEEEEEECC---CCHhHHHHH-----------HHHh
Confidence            69999999999999998764322 11    22233345567 89999999999   974322110           1123


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|||+++.++-+-+.  ...++..+...  .....+|||.|+.|....
T Consensus        82 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  132 (187)
T 1zj6_A           82 TNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC  132 (187)
T ss_dssp             TTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             cCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence            67999999999874433222  22333343332  134689999999997653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.95  E-value=6.7e-09  Score=85.85  Aligned_cols=114  Identities=17%  Similarity=0.040  Sum_probs=62.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.++|....... ...+.  +.......+ +|.  .+.++|||   |......      ..+.   ..
T Consensus        10 ~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~--~~~~~~~~~-~~~~~~~~~~D~~---g~~~~~~------~~~~---~~   73 (175)
T 2nzj_A           10 LGDPGVGKTSLASLFAGKQERDLH-EQLGE--DVYERTLTV-DGEDTTLVVVDTW---EAEKLDK------SWSQ---ES   73 (175)
T ss_dssp             ECCTTSSHHHHHHHHHCC-----C-CCSSS--SEEEEEEEE-TTEEEEEEEECCC----------------CHHH---HH
T ss_pred             ECCCCccHHHHHHHHhcCCCcccc-Ccccc--ceeEEEEEE-CCEEEEEEEEecC---CCCccch------hhhH---Hh
Confidence            699999999999999998643321 22222  223344456 775  68899999   8753210      1111   23


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|+|+++.++-+-+. ...+..+..... ..-..+|||.|+.|....
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~  126 (175)
T 2nzj_A           74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC  126 (175)
T ss_dssp             TTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence            4567899999999873322121 112222333221 123578999999997654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.94  E-value=1.6e-08  Score=84.54  Aligned_cols=138  Identities=14%  Similarity=0.030  Sum_probs=79.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....+  .+.........+ +|  ..+.++|||   |..+....           ...
T Consensus        12 ~G~~~~GKSsli~~l~~~~-~~~~~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~   73 (181)
T 3t5g_A           12 LGYRSVGKSSLTIQFVEGQ-FVDSYDP--TIENTFTKLITV-NGQEYHLQLVDTA---GQDEYSIF-----------PQT   73 (181)
T ss_dssp             EESTTSSHHHHHHHHHHSS-CCSCCCT--TCCEEEEEEEEE-TTEEEEEEEEECC---CCCTTCCC-----------CGG
T ss_pred             ECcCCCCHHHHHHHHHcCC-CCCCCCC--CccccEEEEEEE-CCEEEEEEEEeCC---CchhhhHH-----------HHH
Confidence            6999999999999999765 4433222  122222334455 77  466899999   86543211           113


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|+|+++.++-+-+. ...+..+...++. .-..++||.|+.|.....  .    +   ....++.+.+..+.
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~  143 (181)
T 3t5g_A           74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMER--V----I---SYEEGKALAESWNA  143 (181)
T ss_dssp             GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTC--C----S---CHHHHHHHHHHTTC
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcc--e----e---cHHHHHHHHHHhCC
Confidence            3567999999999873221111 1122233333322 235789999999975441  1    1   12345677777777


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       144 ~~~~~Sa~~  152 (181)
T 3t5g_A          144 AFLESSAKE  152 (181)
T ss_dssp             EEEECCTTS
T ss_pred             cEEEEecCC
Confidence            666555443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.94  E-value=3.8e-09  Score=88.56  Aligned_cols=137  Identities=12%  Similarity=0.012  Sum_probs=61.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.... ..+++.........+ +|  ..+.++|||   |..+..           .....
T Consensus        14 ~G~~~~GKssl~~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~-----------~~~~~   76 (183)
T 2fu5_C           14 IGDSGVGKTCVLFRFSEDA-FNSTF-ISTIGIDFKIRTIEL-DGKRIKLQIWDTA---GQERFR-----------TITTA   76 (183)
T ss_dssp             ECCCCC-----------------CH-HHHHCEEEEEEEEEE-TTEEEEEEEEEC-----------------------CCT
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCCC-CCcccceeEEEEEEE-CCEEEEEEEEcCC---CChhhh-----------hhHHH
Confidence            6999999999999999765 33211 112233344445566 77  689999999   853211           11123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-+. ...+..+....+  .-..++||.|+.|.......+         ...++.+.+..+-
T Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~~~~~  145 (183)
T 2fu5_C           77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVS---------KERGEKLALDYGI  145 (183)
T ss_dssp             TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSC---------HHHHHHHHHHHTC
T ss_pred             HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCC---------HHHHHHHHHHcCC
Confidence            4568999999999873322111 112223333222  235789999999976531011         1234566666676


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      .|+...-+
T Consensus       146 ~~~~~Sa~  153 (183)
T 2fu5_C          146 KFMETSAK  153 (183)
T ss_dssp             EEEECCC-
T ss_pred             eEEEEeCC
Confidence            66554443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.93  E-value=4e-09  Score=89.43  Aligned_cols=140  Identities=14%  Similarity=-0.018  Sum_probs=81.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.......  ..+.+.........+ +|  ..+.++|||   |..+       ....+.   ..
T Consensus        26 ~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~-------~~~~~~---~~   89 (189)
T 1z06_A           26 IGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDI-DGERIKIQLWDTA---GQER-------FRKSMV---QH   89 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEE-TTEEEEEEEEECC---CSHH-------HHTTTH---HH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECC---Cchh-------hhhhhh---HH
Confidence            699999999999999987633221  122333344445556 66  489999999   8421       110111   12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-+. ...+..+...+. .....+|||.|+.|.....  .+       .....+.+....+-
T Consensus        90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~~~~~~  159 (189)
T 1z06_A           90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAI--QV-------PTDLAQKFADTHSM  159 (189)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGC--CS-------CHHHHHHHHHHTTC
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--ee-------CHHHHHHHHHHcCC
Confidence            2357899999999873222111 222333333331 2245789999999975431  11       11234556666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+-++
T Consensus       160 ~~~~~Sa~~  168 (189)
T 1z06_A          160 PLFETSAKN  168 (189)
T ss_dssp             CEEECCSSS
T ss_pred             EEEEEeCCc
Confidence            666665544

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.93  E-value=2e-09  Score=87.75  Aligned_cols=138  Identities=10%  Similarity=0.003  Sum_probs=78.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |..+..    .+..       .
T Consensus         9 ~G~~~~GKSsli~~l~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~---G~~~~~----~~~~-------~   70 (167)
T 1kao_A            9 LGSGGVGKSALTVQFVTGT-FIEKYD--PTIEDFYRKEIEV-DSSPSVLEILDTA---GTEQFA----SMRD-------L   70 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSC-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTCCH----HHHH-------H
T ss_pred             ECCCCCCHHHHHHHHHcCC-CcccCC--CCcceeEEEEEEE-CCEEEEEEEEECC---CchhhH----HHHH-------H
Confidence            6999999999999999875 332221  2222223344455 665  48999999   964321    1111       1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++++|+++.++-+-+. ...+..+...... .-..++||+|+.|.....  .+       .......+.+..+-
T Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~--~~-------~~~~~~~~~~~~~~  140 (167)
T 1kao_A           71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESER--EV-------SSSEGRALAEEWGC  140 (167)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHHHTS
T ss_pred             HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccc--cC-------CHHHHHHHHHHhCC
Confidence            1235789999999873222111 2223333333321 245789999999975431  11       11234555666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+.++
T Consensus       141 ~~~~~Sa~~  149 (167)
T 1kao_A          141 PFMETSAKS  149 (167)
T ss_dssp             CEEEECTTC
T ss_pred             CEEEecCCC
Confidence            676665544

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.93  E-value=4.3e-09  Score=90.51  Aligned_cols=117  Identities=9%  Similarity=0.090  Sum_probs=67.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC-CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH---HHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS-SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF---EFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~-~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~---~~i~~eI~kcv   78 (307)
                      +|++||||||++|.|+|.. |.+..++ .+.|..+  ....+ ++ .+.++|||   |+.+...+.   +.....+.. +
T Consensus        32 vG~~g~GKSTLl~~l~g~~-~~~~~~~~~G~~~~~--~~~~~-~~-~~~l~Dt~---G~~~~~~~~~~~~~~~~~~~~-~  102 (210)
T 1pui_A           32 AGRSNAGKSSALNTLTNQK-SLARTSKTPGRTQLI--NLFEV-AD-GKRLVDLP---GYGYAEVPEEMKRKWQRALGE-Y  102 (210)
T ss_dssp             EECTTSSHHHHHTTTCCC--------------CCE--EEEEE-ET-TEEEEECC---CCC------CCHHHHHHHHHH-H
T ss_pred             ECCCCCCHHHHHHHHhCCC-ccccccCCCccceee--EEEEe-cC-CEEEEECc---CCcccccCHHHHHHHHHHHHH-H
Confidence            6999999999999999986 2222122 2333332  23344 44 78899999   986532211   222222222 2


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .......+++++|+++...++..+.....++..     .....++|.|+.|.+.+
T Consensus       103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A          103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLAS  152 (210)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCH
T ss_pred             HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCCc
Confidence            223467899999999875666655555555432     23457888999998864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.93  E-value=4.3e-10  Score=97.53  Aligned_cols=110  Identities=9%  Similarity=0.075  Sum_probs=66.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+++........+ ...|..     ..+ .+..+.++|||   |..+..   .    .+...+....
T Consensus        18 ~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~-----~~~-~~~~~~l~Dt~---G~~~~~---~----~~~~~~~~~~   80 (218)
T 1nrj_B           18 AGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSA-----ADY-DGSGVTLVDFP---GHVKLR---Y----KLSDYLKTRA   80 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEE-----TTG-GGSSCEEEECC---CCGGGT---H----HHHHHHHHHG
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCeeee-cCceEE-----EEe-eCceEEEEECC---CcHHHH---H----HHHHHHHhcc
Confidence            69999999999999998763221111 111111     112 56789999999   985422   1    1222222223


Q ss_pred             CCCeEEEEEEeCC---CCCCHHHHHHHHHHHHhhcc-----ccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVR---NRFSEEEGAAIHSLESLFGK-----KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~---~RfT~ee~~~l~~i~~~FG~-----~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+|++|||+++.   ..|+...    .++..++..     ....+++||+|+.|....
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTA----EFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHH----HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCChHHHHHHH----HHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            4589999999986   2444333    233333322     124579999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.93  E-value=6.3e-09  Score=89.35  Aligned_cols=137  Identities=14%  Similarity=0.005  Sum_probs=77.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEE-eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTML-KDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~-~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.... ....   .|.... .....+ ..+..+.++|||   |..+....           ...
T Consensus        30 vG~~~~GKSsli~~l~~~~~~-~~~~---~t~~~~~~~~~~~~~~~~~~~l~Dt~---G~~~~~~~-----------~~~   91 (201)
T 3oes_A           30 LGYRCVGKTSLAHQFVEGEFS-EGYD---PTVENTYSKIVTLGKDEFHLHLVDTA---GQDEYSIL-----------PYS   91 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSCCC-SCCC---CCSEEEEEEEEC----CEEEEEEEEC---CCCTTCCC-----------CGG
T ss_pred             ECCCCcCHHHHHHHHHhCCCC-CCCC---CccceEEEEEEEECCEEEEEEEEECC---CccchHHH-----------HHH
Confidence            699999999999999987633 2221   122211 222222 034678999999   86543211           123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ...+.|++|||+++.++-+-+  .+..++..+...  ..-..+|||+|+.|.....  .    +   .......+....+
T Consensus        92 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~----v---~~~~~~~~~~~~~  160 (201)
T 3oes_A           92 FIIGVHGYVLVYSVTSLHSFQ--VIESLYQKLHEGHGKTRVPVVLVGNKADLSPER--E----V---QAVEGKKLAESWG  160 (201)
T ss_dssp             GTTTCCEEEEEEETTCHHHHH--HHHHHHHHHHC-----CCCEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHT
T ss_pred             HHhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccCcccc--c----c---CHHHHHHHHHHhC
Confidence            456899999999987322111  122333333222  1234789999999976431  1    1   1123456667777


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      ..|+...-++
T Consensus       161 ~~~~~~Sa~~  170 (201)
T 3oes_A          161 ATFMESSARE  170 (201)
T ss_dssp             CEEEECCTTC
T ss_pred             CeEEEEeCCC
Confidence            7666555443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.92  E-value=6.6e-09  Score=86.75  Aligned_cols=144  Identities=16%  Similarity=0.000  Sum_probs=82.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |..+..           ....
T Consensus        10 ~~G~~~~GKssl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~-----------~~~~   71 (186)
T 1mh1_A           10 VVGDGAVGKTCLLISYTTNA-FPGEYI--PTVFDNYSANVMV-DGKPVNLGLWDTA---GQEDYD-----------RLRP   71 (186)
T ss_dssp             EECSTTSSHHHHHHHHHHSS-CCSSCC--CCSCCEEEEEEEE-TTEEEEEEEECCC---CSGGGT-----------TTGG
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCCcC--CcccceeEEEEEE-CCEEEEEEEEECC---CCHhHH-----------HHHH
Confidence            36999999999999999765 432221  2222222333455 775  45599999   874321           1112


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhc-----CCCCCchHHH
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYL-----GPECPKPLKE  152 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl-----~~~~~~~Lk~  152 (307)
                      ....+.|++|||+++.++-+-++.  ..+..+....+   ..+++||.|+.|....  ....+.+     ..-.......
T Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~  146 (186)
T 1mh1_A           72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQGLA  146 (186)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHHHH
T ss_pred             HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHHHHH
Confidence            345689999999998743222222  23444444332   4578999999997765  2222221     1101234455


Q ss_pred             HHHhcCC-eEEEEcCCC
Q 044972          153 ILQLCDN-RRVLFDNKT  168 (307)
Q Consensus       153 Li~~Cg~-R~~~fnNk~  168 (307)
                      +.+..+. .|+...-++
T Consensus       147 ~~~~~~~~~~~~~Sa~~  163 (186)
T 1mh1_A          147 MAKEIGAVKYLECSALT  163 (186)
T ss_dssp             HHHHTTCSEEEECCTTT
T ss_pred             HHHhcCCcEEEEecCCC
Confidence            6666665 565555443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.92  E-value=5.4e-10  Score=95.94  Aligned_cols=144  Identities=11%  Similarity=-0.000  Sum_probs=76.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....+ .++.+.......+ +|  ..+.++|||   |..+.    ..+   ...    
T Consensus        34 ~G~~~~GKSsli~~l~~~~-~~~~~~~-t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~----~~~---~~~----   96 (199)
T 2p5s_A           34 AGDAAVGKSSFLMRLCKNE-FRENISA-TLGVDFQMKTLIV-DGERTVLQLWDTA---GQERF----RSI---AKS----   96 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHCC-CC-----------CEEEEEEE-TTEEEEEEEEECT---TCTTC----HHH---HHH----
T ss_pred             ECcCCCCHHHHHHHHHhCC-CCccCCC-CccceeEEEEEEE-CCEEEEEEEEECC---CCcch----hhh---HHH----
Confidence            6999999999999999876 3222111 1112223334455 66  468999999   96432    111   111    


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-++ ...+..+......  -..+|||.|+.|....  ... +....-.......+....+-
T Consensus        97 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~--~~~-~~~~~v~~~~~~~~~~~~~~  171 (199)
T 2p5s_A           97 YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIRDT--AAT-EGQKCVPGHFGEKLAMTYGA  171 (199)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHH-TTCCCCCHHHHHHHHHHHTC
T ss_pred             HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--ccc-ccccccCHHHHHHHHHHcCC
Confidence            1235799999999863332222 2223333333222  3578999999997532  111 01111012234566666777


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       172 ~~~~~SA~~  180 (199)
T 2p5s_A          172 LFCETSAKD  180 (199)
T ss_dssp             EEEECCTTT
T ss_pred             eEEEeeCCC
Confidence            766555543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.92  E-value=3.5e-09  Score=97.66  Aligned_cols=138  Identities=12%  Similarity=0.023  Sum_probs=83.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-CeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-GQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~l   80 (307)
                      +|.|||||||++|.+.|...+.+..+  ++|...  ..+.+ + +..+.++|||   |..+... +.+   +.+.+... 
T Consensus         9 vG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~--~~~~~-~~~~~l~l~Dtp---G~~~~~~~~~~---e~v~~~~~-   76 (272)
T 3b1v_A            9 IGNPNSGKTSLFNLITGHNQRVGNWP--GVTVER--KSGLV-KKNKDLEIQDLP---GIYSMSPYSPE---AKVARDYL-   76 (272)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSC--EEEEC-TTCTTEEEEECC---CCSCSSCSSHH---HHHHHHHH-
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEE--EEEEE-ecCCeEEEEECC---CcCccCCCChH---HHHHHHHH-
Confidence            69999999999999999886654432  445433  23445 4 7789999999   8875432 222   22333222 


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR  160 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R  160 (307)
                      ...++|++|+|+++. .+ +.   .+.++..+..  .-..+||+.|+.|.....  .    +    ......|.+..|-.
T Consensus        77 ~~~~~d~vi~V~D~t-~~-e~---~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~--~----~----~~~~~~l~~~lg~~  139 (272)
T 3b1v_A           77 LSQRADSILNVVDAT-NL-ER---NLYLTTQLIE--TGIPVTIALNMIDVLDGQ--G----K----KINVDKLSYHLGVP  139 (272)
T ss_dssp             HTTCCSEEEEEEEGG-GH-HH---HHHHHHHHHH--TCSCEEEEEECHHHHHHT--T----C----CCCHHHHHHHHTSC
T ss_pred             hcCCCCEEEEEecCC-ch-Hh---HHHHHHHHHh--cCCCEEEEEEChhhCCcC--C----c----HHHHHHHHHHcCCC
Confidence            225799999999986 32 11   2223222221  235789999998865321  0    1    12345666666666


Q ss_pred             EEEEcCCCC
Q 044972          161 RVLFDNKTK  169 (307)
Q Consensus       161 ~~~fnNk~~  169 (307)
                      ++...-+..
T Consensus       140 vi~~SA~~g  148 (272)
T 3b1v_A          140 VVATSALKQ  148 (272)
T ss_dssp             EEECBTTTT
T ss_pred             EEEEEccCC
Confidence            666665443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.92  E-value=2.7e-09  Score=88.63  Aligned_cols=113  Identities=12%  Similarity=-0.055  Sum_probs=64.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC-C--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD-G--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~-G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|++||||||++|.+++..... .. ....+.........+ + +  ..+.++|||   |..+.           .....
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~---G~~~~-----------~~~~~   76 (182)
T 1ky3_A           14 LGDSGVGKTSLMHRYVNDKYSQ-QY-KATIGADFLTKEVTV-DGDKVATMQVWDTA---GQERF-----------QSLGV   76 (182)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCT-TC----CCCSCEEEEECC-SSSCCEEEEEECCC------------------------
T ss_pred             ECCCCCCHHHHHHHHHhCcCCc-cc-CCccceEEEEEEEEE-cCCcEEEEEEEECC---CChHh-----------hhhhH
Confidence            6999999999999999876332 21 112223333444445 4 2  588999999   84321           11123


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc--ccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK--KVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|||+++.++-+-++ ...+..+....+.  ..-..++||+|+.|...
T Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  132 (182)
T 1ky3_A           77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  132 (182)
T ss_dssp             CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence            45578999999999873322111 2223333333321  13457899999999754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.92  E-value=7.8e-09  Score=89.47  Aligned_cols=138  Identities=10%  Similarity=-0.023  Sum_probs=80.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeC------------CeEEEEEeCCCCCCCCCCCcCHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKD------------GQVVNVIDTPAIARLFDSSADFEFV   70 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~------------Gr~v~VIDTP~~~Gl~Dt~~~~~~i   70 (307)
                      +|.+||||||++|.+++.. |..... ..++.........+ +            +..+.|+|||   |..       ..
T Consensus        31 vG~~~~GKSsLi~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~Dt~---G~~-------~~   97 (217)
T 2f7s_A           31 LGDSGVGKTTFLYRYTDNK-FNPKFI-TTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTA---GQE-------RF   97 (217)
T ss_dssp             ESCTTSSHHHHHHHHHCSC-CCCEEE-EEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEE---SHH-------HH
T ss_pred             ECcCCCCHHHHHHHHhcCC-CCcCCC-CceeEEEEEEEEEE-CCccccccccCceeEEEEEEECC---CcH-------hH
Confidence            6999999999999999875 321111 11111122223334 3            4589999999   831       11


Q ss_pred             HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                          .........+.|++|||+++.++.+  ...+..++..+....  ....+|||+|+.|.....  .    +   ...
T Consensus        98 ----~~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--~----v---~~~  162 (217)
T 2f7s_A           98 ----RSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR--E----V---NER  162 (217)
T ss_dssp             ----HHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC--C----S---CHH
T ss_pred             ----HhHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc--c----c---CHH
Confidence                1112233467899999999863222  122234444443322  245789999999975431  1    1   113


Q ss_pred             hHHHHHHhcCCeEEEEcCCC
Q 044972          149 PLKEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       149 ~Lk~Li~~Cg~R~~~fnNk~  168 (307)
                      .++.+.+..+-.|+....++
T Consensus       163 ~~~~~~~~~~~~~~~~Sa~~  182 (217)
T 2f7s_A          163 QARELADKYGIPYFETSAAT  182 (217)
T ss_dssp             HHHHHHHHTTCCEEEEBTTT
T ss_pred             HHHHHHHHCCCcEEEEECCC
Confidence            45666777777777776654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.92  E-value=9.4e-10  Score=93.31  Aligned_cols=138  Identities=14%  Similarity=0.032  Sum_probs=78.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++... .....+ ... ........+ ++.  .+.++|||   |..+..    .+..       .
T Consensus        14 vG~~~~GKSsli~~l~~~~~-~~~~~~-t~~-~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~----~~~~-------~   75 (199)
T 2gf0_A           14 FGAGGVGKSSLVLRFVKGTF-RDTYIP-TIE-DTYRQVISC-DKSVCTLQITDTT---GSHQFP----AMQR-------L   75 (199)
T ss_dssp             EECTTSSHHHHHHHHHHSCC-CCTTSC-CCC-EEEEEEEEE-TTEEEEEEEEECC---GGGSCH----HHHH-------H
T ss_pred             ECCCCCcHHHHHHHHHcCCC-CCcccC-ccc-cceeEEEEE-CCEEEEEEEEeCC---ChHHhH----HHHH-------H
Confidence            69999999999999998653 221111 111 111222334 543  78999999   965421    1111       1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ..++.|++|||+++.++-+-++ ...+..+..+.+......+|||+|+.|..... .+         ......+....+-
T Consensus        76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~  145 (199)
T 2gf0_A           76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VD---------TREAQAVAQEWKC  145 (199)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SC---------HHHHHHHHHHHTC
T ss_pred             hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cC---------HHHHHHHHHHhCC
Confidence            2245799999999873222121 22344455554433345799999999976431 11         1234455566666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+-++
T Consensus       146 ~~~~~Sa~~  154 (199)
T 2gf0_A          146 AFMETSAKM  154 (199)
T ss_dssp             EEEECBTTT
T ss_pred             eEEEEecCC
Confidence            666555443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.90  E-value=3.1e-08  Score=82.93  Aligned_cols=138  Identities=17%  Similarity=0.058  Sum_probs=80.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEE--EEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVV--NVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v--~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ ++..+  .++|||   |..+......           
T Consensus        23 v~G~~~~GKSsl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~~~~~-----------   84 (183)
T 3kkq_A           23 VVGDGGVGKSALTIQFFQKI-FVDDYD--PTIEDSYLKHTEI-DNQWAILDVLDTA---GQEEFSAMRE-----------   84 (183)
T ss_dssp             EECSTTSSHHHHHHHHHHSC-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---SCGGGCSSHH-----------
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCCCCC--CCccceeEEEEEe-CCcEEEEEEEECC---CchhhHHHHH-----------
Confidence            36999999999999999874 433222  2222222444456 77654  459999   8543221111           


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++|||+++.++-+-+. ...+..+...... .-..+|||+|+.|.....  .    +   .....+.+.+..+
T Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~----v---~~~~~~~~~~~~~  154 (183)
T 3kkq_A           85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLR--K----V---TRDQGKEMATKYN  154 (183)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTC--C----S---CHHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhcc--C----c---CHHHHHHHHHHhC
Confidence            11235899999999873221111 1222333332221 234689999999976531  1    1   1234567777778


Q ss_pred             CeEEEEcCC
Q 044972          159 NRRVLFDNK  167 (307)
Q Consensus       159 ~R~~~fnNk  167 (307)
                      ..|+....+
T Consensus       155 ~~~~~~Sa~  163 (183)
T 3kkq_A          155 IPYIETSAK  163 (183)
T ss_dssp             CCEEEEBCS
T ss_pred             CeEEEeccC
Confidence            778777766

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.90  E-value=1.1e-08  Score=85.92  Aligned_cols=115  Identities=17%  Similarity=0.067  Sum_probs=69.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH----HHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF----EFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~----~~i~~eI~kcv   78 (307)
                      +|.+||||||++|.++|.. |..... .++|..+.  ...+ +  .+.++|||   |+.+....+    +.....+...+
T Consensus         7 ~G~~~~GKSsli~~l~~~~-~~~~~~-~~~t~~~~--~~~~-~--~~~l~Dt~---G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            7 AGRSNVGKSTLIYRLTGKK-VRRGKR-PGVTRKII--EIEW-K--NHKIIDMP---GFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             EEBTTSSHHHHHHHHHSCC-CSSSSS-TTCTTSCE--EEEE-T--TEEEEECC---CBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCcC-CccCCC-CCccceeE--EEec-C--CEEEEECC---CccccccCCHHHHHHHHHHHHHHH
Confidence            6999999999999999987 543322 24444433  2334 4  79999999   976543222    22222333333


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHH------------HHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEE------------EGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~e------------e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .....+++++++|++.. .|..-            +...+..+..     .-.+++||.|+.|....
T Consensus        77 ~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~  137 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN  137 (190)
T ss_dssp             HHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC
T ss_pred             HhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCc
Confidence            22256788888888865 33221            1112222221     24578999999997654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.89  E-value=1.8e-08  Score=86.15  Aligned_cols=108  Identities=9%  Similarity=-0.050  Sum_probs=71.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+++.. |..    .+.|.........+ +|..+.++|||   |..+....           .....
T Consensus        29 vG~~~vGKSsli~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~-----------~~~~~   88 (190)
T 1m2o_B           29 LGLDNAGKTTLLHMLKNDR-LAT----LQPTWHPTSEELAI-GNIKFTTFDLG---GHIQARRL-----------WKDYF   88 (190)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCC----CCCCCSCEEEEEEE-TTEEEEEEECC---CSGGGTTS-----------GGGGC
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCc----cccCCCCCeEEEEE-CCEEEEEEECC---CCHHHHHH-----------HHHHH
Confidence            6999999999999999876 321    12233344556677 89999999999   87542210           12335


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~  132 (307)
                      .+.|++|||+++.++-+-+  ....++..++..  ..-.+++||.|+.|...
T Consensus        89 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           89 PEVNGIVFLVDAADPERFD--EARVELDALFNIAELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             TTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             hcCCEEEEEEECCChHHHH--HHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence            6899999999987432222  122334443322  12457899999999765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.89  E-value=1.3e-08  Score=94.92  Aligned_cols=141  Identities=13%  Similarity=0.029  Sum_probs=84.1

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHH-HHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEI-VKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI-~kcv~l   80 (307)
                      +|.+||||||+.|.++|.. .|.+..  ...|.........+.++..+.++|||   |..+       ..... ......
T Consensus         9 vG~~~vGKSSLi~~l~~~~~~~~~~~--~~~Ti~~~~~~~~~~~~~~l~i~Dt~---G~~~-------~~~~~~~~~~~~   76 (307)
T 3r7w_A            9 MGRSGSGKSSMRSIIFSNYSAFDTRR--LGATIDVEHSHLRFLGNMTLNLWDCG---GQDV-------FMENYFTKQKDH   76 (307)
T ss_dssp             ECCTTSSHHHHHHHHHSCCCTGGGGG--CCCCCSEEEEEEEETTTEEEEEEEEC---CSHH-------HHHHHHTTTHHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCccccC--cCCccceEEEEEEeCCceEEEEEECC---CcHH-------HhhhhhhhHHHH
Confidence            6999999999999999873 455432  24465555555555356799999999   8532       11111 111122


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ...++|++|+|+++.++-+-++.. ...++..+.....-..++||.|+.|....  ....+.... ....++.+.+..|
T Consensus        77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~v-~~~~~~~~~~~~g  152 (307)
T 3r7w_A           77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQI-MMKNLSETSSEFG  152 (307)
T ss_dssp             HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHH-HHHHHHHHHHTTT
T ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHHH-HHHHHHHHHHHcC
Confidence            336899999999997554444432 23344443322234689999999998763  111111100 1234667777766

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.88  E-value=1.2e-08  Score=86.82  Aligned_cols=138  Identities=9%  Similarity=-0.065  Sum_probs=80.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+......  ...+.........+ +|.  .+.++|||   |..+.....           ..
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~-----------~~   89 (191)
T 2a5j_A           27 IGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNI-DGKQIKLQIWDTA---GQESFRSIT-----------RS   89 (191)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCT---TGGGTSCCC-----------HH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECC---CchhhhhhH-----------HH
Confidence            6999999999999999876432211  22333344445556 764  88999999   864322110           11


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++-+-++ ...+..+.....  ....++||+|+.|.....  .    +   .....+.+....+-
T Consensus        90 ~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~--~----v---~~~~~~~~~~~~~~  158 (191)
T 2a5j_A           90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRR--D----V---KREEGEAFAREHGL  158 (191)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHTC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCcc--c----c---CHHHHHHHHHHcCC
Confidence            2357899999999873222111 122233333221  245789999999975431  1    1   11235566667777


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+..+.++
T Consensus       159 ~~~~~Sa~~  167 (191)
T 2a5j_A          159 IFMETSAKT  167 (191)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEEeCCC
Confidence            777776554

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.88  E-value=4.2e-09  Score=86.26  Aligned_cols=113  Identities=11%  Similarity=0.003  Sum_probs=65.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ ++  ..+.++|||   |..+...    +...      
T Consensus         8 v~G~~~~GKssli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~l~D~~---G~~~~~~----~~~~------   70 (167)
T 1c1y_A            8 VLGSGGVGKSALTVQFVQGI-FVEKYD--PTIEDSYRKQVEV-DCQQCMLEILDTA---GTEQFTA----MRDL------   70 (167)
T ss_dssp             EECSTTSSHHHHHHHHHHCC-CCCSCC--CCSEEEEEEEEES-SSCEEEEEEEEEC---SSCSSTT----HHHH------
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCCCC--CCccceEEEEEEE-CCEEEEEEEEECC---ChHHHHH----HHHH------
Confidence            36999999999999999865 432221  1121222223344 44  478899999   9654321    1111      


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                       ...+.|++++|+++.++-+-+. ...+..+...... ....++||+|+.|....
T Consensus        71 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  123 (167)
T 1c1y_A           71 -YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             -HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred             -HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc
Confidence             1134799999999873322111 2233334443322 24578999999997643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.88  E-value=2.1e-08  Score=85.13  Aligned_cols=110  Identities=16%  Similarity=0.036  Sum_probs=69.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....  +.+.........+ +|  ..+.++|||   |..+...           ....
T Consensus        24 ~G~~~~GKssli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~D~~---G~~~~~~-----------~~~~   85 (194)
T 2atx_A           24 VGDGAVGKTCLLMSYANDA-FPEEYV--PTVFDHYAVSVTV-GGKQYLLGLYDTA---GQEDYDR-----------LRPL   85 (194)
T ss_dssp             EECTTSSHHHHHHHHHHSS-CCCSCC--CSSCCCEEEEEES-SSCEEEEEEECCC---CSSSSTT-----------TGGG
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCCC--CcccceeEEEEEE-CCEEEEEEEEECC---CCcchhH-----------HHHH
Confidence            6999999999999999874 543322  2222222233445 66  578899999   9754321           1123


Q ss_pred             cCCCCeEEEEEEeCCCC--CCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNR--FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~R--fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|||+++.++  |..-....+..+....+   ...++||+|+.|....
T Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence            45789999999998733  22211123444444322   4579999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.87  E-value=1.6e-08  Score=86.63  Aligned_cols=117  Identities=12%  Similarity=0.026  Sum_probs=70.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.++|.-........ ..|.  ......+.  ....+.++|||   |..+-......    ..    .
T Consensus        26 vG~~~vGKTsLi~~l~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~i~Dt~---G~~~~~~~~~~----~~----~   91 (196)
T 3llu_A           26 MGLRRSGKSSIQKVVFHKMSPNETLFL-ESTN--KIYKDDISNSSFVNFQIWDFP---GQMDFFDPTFD----YE----M   91 (196)
T ss_dssp             EESTTSSHHHHHHHHHSCCCGGGGGGC-CCCC--SCEEEEECCTTSCCEEEEECC---SSCCTTCTTCC----HH----H
T ss_pred             ECCCCCCHHHHHHHHHhcCCCcceeee-cccc--ceeeeeccCCCeeEEEEEECC---CCHHHHhhhhh----cc----c
Confidence            699999999999999996322211111 1111  11122221  33689999999   86442111100    00    1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|||+++.+++.+.......++..+....-...+|||.|+.|.+.+
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence            12368999999999866545555556666665322335688999999998764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.87  E-value=2.3e-09  Score=92.95  Aligned_cols=137  Identities=18%  Similarity=0.143  Sum_probs=77.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEE--EEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRT--MLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~--~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      +|.+||||||++|.++|.. |......   |........  ...+|  ..+.++|||   |..+......          
T Consensus        17 vG~~~~GKSsli~~l~~~~-~~~~~~~---t~~~~~~~~~~~~~~~~~~~~~l~Dt~---G~~~~~~~~~----------   79 (218)
T 4djt_A           17 IGDGGVGKTTYINRVLDGR-FEKNYNA---TVGAVNHPVTFLDDQGNVIKFNVWDTA---GQEKKAVLKD----------   79 (218)
T ss_dssp             ECCTTSSHHHHHCBCTTCS-TTCEEET---TTTEEEEEEEEEBTTSCEEEEEEEEEC---SGGGTSCCCH----------
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCCCC---ccceeeEEEEEEeCCCcEEEEEEEecC---CchhhchHHH----------
Confidence            6999999999999999876 3322211   222211111  12123  579999999   8654321111          


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                       ....+.|++|||+++.++.+-++ ...+..+....+.  -..+|||.|+.|.....  .    +   .......+....
T Consensus        80 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~  147 (218)
T 4djt_A           80 -VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKNRQ--K----I---SKKLVMEVLKGK  147 (218)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC----------C---CHHHHHHHTTTC
T ss_pred             -HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccc--c----c---CHHHHHHHHHHc
Confidence             12357899999999874443332 2233444444432  25789999999976431  1    1   112234444555


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +..|+...-++
T Consensus       148 ~~~~~~~Sa~~  158 (218)
T 4djt_A          148 NYEYFEISAKT  158 (218)
T ss_dssp             CCEEEEEBTTT
T ss_pred             CCcEEEEecCC
Confidence            66676666554

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.86  E-value=1.7e-08  Score=98.37  Aligned_cols=132  Identities=10%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCc--cccc------c----C-------------------CCCCCceeEEEEEEEeCCeEEEE
Q 044972            3 ACEYIKICTTTGNSILGRRA--FKSK------V----G-------------------SSEDTKTCEMQRTMLKDGQVVNV   51 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~--F~s~------~----s-------------------~~svT~~c~~~~~~~~~Gr~v~V   51 (307)
                      +|.+|+||||++|.|++...  |...      .    +                   ..+.|..+......+ +++.+++
T Consensus        30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-~~~~~~i  108 (434)
T 1zun_B           30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-AKRKFII  108 (434)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-SSEEEEE
T ss_pred             EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-CCceEEE
Confidence            69999999999999997642  1100      0    0                   013344444444556 7889999


Q ss_pred             EeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           52 IDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        52 IDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ||||   |..+       ....+..    ....+|++|||+++...+..+....+..+.. +|   ..++|||+|+.|..
T Consensus       109 iDtp---Gh~~-------f~~~~~~----~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~---~~~iIvviNK~Dl~  170 (434)
T 1zun_B          109 ADTP---GHEQ-------YTRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASL-LG---IKHIVVAINKMDLN  170 (434)
T ss_dssp             EECC---CSGG-------GHHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCEEEEEEECTTTT
T ss_pred             EECC---ChHH-------HHHHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEEcCcCC
Confidence            9999   9643       1222222    2368999999999976777776666655443 23   35799999999987


Q ss_pred             CCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972          132 EDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       132 ~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ..+...++...     ..++.+++..|
T Consensus       171 ~~~~~~~~~i~-----~~~~~~~~~~g  192 (434)
T 1zun_B          171 GFDERVFESIK-----ADYLKFAEGIA  192 (434)
T ss_dssp             TSCHHHHHHHH-----HHHHHHHHTTT
T ss_pred             cccHHHHHHHH-----HHHHHHHHHhC
Confidence            53111222211     24677777777

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.86  E-value=9.4e-09  Score=100.75  Aligned_cols=111  Identities=13%  Similarity=0.087  Sum_probs=72.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+||||++|.||+........                             ...+.|.........+ +++.+++||
T Consensus        23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~~~~~iiD  101 (439)
T 3j2k_7           23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EKKHFTILD  101 (439)
T ss_pred             EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CCeEEEEEE
Confidence            6999999999999998763211100                             0124566666666677 899999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCC-------HHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFS-------EEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT-------~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |..+       ....+.    ....++|++|||+++.....       .+.+..+..+.. .|   ..++||++|
T Consensus       102 TP---Gh~~-------f~~~~~----~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~---v~~iIvviN  163 (439)
T 3j2k_7          102 AP---GHKS-------FVPNMI----GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AG---VKHLIVLIN  163 (439)
T ss_pred             CC---ChHH-------HHHHHH----hhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cC---CCeEEEEee
Confidence            99   8532       222222    23457999999999874433       344444444433 22   456899999


Q ss_pred             cCCCCC
Q 044972          127 RGDELE  132 (307)
Q Consensus       127 ~~D~L~  132 (307)
                      +.|...
T Consensus       164 K~Dl~~  169 (439)
T 3j2k_7          164 KMDDPT  169 (439)
T ss_pred             cCCCcc
Confidence            999754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.86  E-value=2.3e-08  Score=85.68  Aligned_cols=109  Identities=9%  Similarity=-0.040  Sum_probs=67.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+++.+ |...    ..|.........+ ++..+.++|||   |..+....       ..    ...
T Consensus        35 ~G~~~vGKSsLi~~l~~~~-~~~~----~~t~~~~~~~~~~-~~~~~~i~Dt~---G~~~~~~~-------~~----~~~   94 (192)
T 2b6h_A           35 VGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEY-KNICFTVWDVG---GQDKIRPL-------WR----HYF   94 (192)
T ss_dssp             EESTTSSHHHHHHHHCSSC-CEEE----EEETTEEEEEEEE-TTEEEEEEECC--------CTT-------HH----HHH
T ss_pred             ECCCCCCHHHHHHHHHhCC-cccc----CCcCceeEEEEEE-CCEEEEEEECC---CCHhHHHH-------HH----HHh
Confidence            6999999999999999876 4322    1243444555667 88999999999   97542211       11    112


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|||+++.++-+-+  .+..++..+....  .-..+|||.|+.|....
T Consensus        95 ~~~d~iilv~D~~~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A           95 QNTQGLIFVVDSNDRERVQ--ESADELQKMLQEDELRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             HTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCHHHHH--HHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence            4789999999987432211  2234444443322  24578999999997544

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.85  E-value=4.2e-09  Score=90.00  Aligned_cols=111  Identities=8%  Similarity=-0.016  Sum_probs=64.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.......  ...++.+.......+ +|  ..+.++|||   |..+.    ..+   ...    
T Consensus        32 vG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~~----~~~---~~~----   94 (192)
T 2il1_A           32 IGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVEL-RGKKIRLQIWDTA---GQERF----NSI---TSA----   94 (192)
T ss_dssp             ECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEEC---CSGGG----HHH---HHH----
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCC--CCccceeEEEEEEEE-CCeEEEEEEEeCC---CcHHH----HHH---HHH----
Confidence            699999999999999987633221  223333444455566 66  478999999   85321    111   111    


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|||+++.++.+-++. ..+..+.....  .-..++||+|+.|...
T Consensus        95 ~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~  145 (192)
T 2il1_A           95 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET  145 (192)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            12357999999998743332221 12233333221  2357899999999754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.85  E-value=1.5e-08  Score=86.10  Aligned_cols=139  Identities=10%  Similarity=-0.034  Sum_probs=80.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|..  +.++|||   |..+..           ....
T Consensus        28 ~vG~~~~GKSsl~~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~-----------~~~~   89 (194)
T 3reg_A           28 VVGDGAVGKTCLLLAFSKGE-IPTAYV--PTVFENFSHVMKY-KNEEFILHLWDTA---GQEEYD-----------RLRP   89 (194)
T ss_dssp             EECSTTSSHHHHHHHHHHSC-CCSSCC--CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGT-----------TTGG
T ss_pred             EECcCCCCHHHHHHHHhcCC-CCCccC--CeeeeeeEEEEEE-CCEEEEEEEEECC---CcHHHH-----------HHhH
Confidence            37999999999999999876 432221  1121222233445 6654  5999999   843211           1122


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      ....+.|++|||+++.++-+-++  ...+..+....   .-..+|||.|+.|.......    .+   .......+.+..
T Consensus        90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~----~~---~~~~~~~~~~~~  159 (194)
T 3reg_A           90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSD----DV---TKQEGDDLCQKL  159 (194)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTT----CC---CHHHHHHHHHHH
T ss_pred             hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCC----cc---cHHHHHHHHHhc
Confidence            35578999999999874322222  22233333322   13578999999997653100    01   123456677776


Q ss_pred             CCe-EEEEcCCC
Q 044972          158 DNR-RVLFDNKT  168 (307)
Q Consensus       158 g~R-~~~fnNk~  168 (307)
                      +.. |+...-++
T Consensus       160 ~~~~~~~~Sa~~  171 (194)
T 3reg_A          160 GCVAYIEASSVA  171 (194)
T ss_dssp             TCSCEEECBTTT
T ss_pred             CCCEEEEeecCC
Confidence            765 66555443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.85  E-value=2.3e-08  Score=86.20  Aligned_cols=138  Identities=12%  Similarity=0.024  Sum_probs=78.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.... ...++.........+ +|  ..+.|+|||   |..+.    ..    +   ...
T Consensus        35 vG~~~vGKSsli~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~----~~----~---~~~   97 (201)
T 2hup_A           35 VGDASVGKTCVVQRFKTGA-FSERQ-GSTIGVDFTMKTLEI-QGKRVKLQIWDTA---GQERF----RT----I---TQS   97 (201)
T ss_dssp             EECTTSSHHHHHHHHHHSC-C-----------CEEEEEEEE-TTEEEEEEEECCT---TCGGG----HH----H---HHH
T ss_pred             ECcCCCCHHHHHHHHhhCC-CCCCC-CCCcceEEEEEEEEE-CCEEEEEEEEECC---CcHhH----HH----H---HHH
Confidence            6999999999999999876 43221 112223344445566 77  489999999   86321    11    1   122


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++-+-+. ...+..+....+  .-..+|||.|+.|.......+         ...++.+.+..+.
T Consensus        98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~---------~~~~~~~~~~~~~  166 (201)
T 2hup_A           98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVS---------LAEAQSLAEHYDI  166 (201)
T ss_dssp             HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSC---------HHHHHHHHHHTTC
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccC---------HHHHHHHHHHcCC
Confidence            3467899999999863222111 122333333321  235789999999976431011         2345667777776


Q ss_pred             -eEEEEcCCC
Q 044972          160 -RRVLFDNKT  168 (307)
Q Consensus       160 -R~~~fnNk~  168 (307)
                       .|+...-++
T Consensus       167 ~~~~~~SA~~  176 (201)
T 2hup_A          167 LCAIETSAKD  176 (201)
T ss_dssp             SEEEECBTTT
T ss_pred             CEEEEEeCCC
Confidence             666655544

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.85  E-value=9.7e-09  Score=85.29  Aligned_cols=140  Identities=14%  Similarity=0.027  Sum_probs=80.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC---eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG---QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G---r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|++||||||++|.+++.+ |..... ..++.........+ +|   ..+.++|||   |........           .
T Consensus        12 ~G~~~~GKssl~~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~---G~~~~~~~~-----------~   74 (178)
T 2hxs_A           12 LGDGASGKTSLTTCFAQET-FGKQYK-QTIGLDFFLRRITL-PGNLNVTLQIWDIG---GQTIGGKML-----------D   74 (178)
T ss_dssp             ECCTTSSHHHHHHHHHGGG-TTHHHH-HTTTSSEEEEEEEE-TTTEEEEEEEEECT---TCCTTCTTH-----------H
T ss_pred             ECcCCCCHHHHHHHHHhCc-CCCCCC-CceeEEEEEEEEEe-CCCCEEEEEEEECC---CCccccchh-----------h
Confidence            6999999999999999876 322111 12222344445566 55   689999999   864422111           1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccc-cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKK-VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      ....+.|++|||+++.++.+-++ ...+..+....... -...++||.|+.|.......+         ....+.+.+..
T Consensus        75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---------~~~~~~~~~~~  145 (178)
T 2hxs_A           75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---------PEKHLRFCQEN  145 (178)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---------HHHHHHHHHHH
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---------HHHHHHHHHHc
Confidence            12357899999999873322221 12233333332221 223478999999975421011         12345566666


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +-.|+...-++
T Consensus       146 ~~~~~~~Sa~~  156 (178)
T 2hxs_A          146 GFSSHFVSAKT  156 (178)
T ss_dssp             TCEEEEECTTT
T ss_pred             CCcEEEEeCCC
Confidence            66666665544

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.84  E-value=1.8e-08  Score=86.66  Aligned_cols=138  Identities=10%  Similarity=-0.030  Sum_probs=75.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.......  ...++.........+ +|  ..+.++|||   |..+...        +   ...
T Consensus        31 ~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~~~~--------~---~~~   93 (200)
T 2o52_A           31 IGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNV-GGKTVKLQIWDTA---GQERFRS--------V---TRS   93 (200)
T ss_dssp             EESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCT---THHHHSC--------C---CHH
T ss_pred             ECcCCCCHHHHHHHHHhCCCCccC--CCcccceeEEEEEEE-CCeeeEEEEEcCC---CcHhHHH--------H---HHH
Confidence            699999999999999987643221  122233333444456 66  589999999   8421110        0   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-++ ...+..+.....  ....++||+|+.|.......+         ......+.+..+-
T Consensus        94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~~~~~  162 (200)
T 2o52_A           94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVT---------FLEASRFAQENEL  162 (200)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccC---------HHHHHHHHHHcCC
Confidence            2357899999999873322111 122222333222  235789999999975431011         1234555666666


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       163 ~~~~~SA~~  171 (200)
T 2o52_A          163 MFLETSALT  171 (200)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEEeCCC
Confidence            676665544

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.84  E-value=9e-09  Score=105.16  Aligned_cols=133  Identities=11%  Similarity=0.063  Sum_probs=85.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc--------------C---------------CCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV--------------G---------------SSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~--------------s---------------~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+||||++|.|++........              +               ..++|.........+ .++.++|||
T Consensus       173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~~~~~iiD  251 (611)
T 3izq_1          173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRANFTIVD  251 (611)
T ss_dssp             ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SSCEEEEEE
T ss_pred             EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CCceEEEEE
Confidence            6999999999999999874321110              0               124565555556667 889999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |.-+           ..+.+.....++|++|||+++...       +..+....+..+.. +|   ..++|||+|
T Consensus       252 TP---G~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~iIVVvN  313 (611)
T 3izq_1          252 AP---GHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHNLIIAMN  313 (611)
T ss_dssp             CC---SSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCEEEEEEE
T ss_pred             CC---CCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCeEEEEEe
Confidence            99   9743           223334556789999999998621       34445444444432 23   457999999


Q ss_pred             cCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972          127 RGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus       127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      +.|........++...     ..+..++..+|.
T Consensus       314 KiDl~~~~~~~~~ei~-----~~l~~~l~~~g~  341 (611)
T 3izq_1          314 KMDNVDWSQQRFEEIK-----SKLLPYLVDIGF  341 (611)
T ss_dssp             CTTTTTTCHHHHHHHH-----HHHHHHHHHHTC
T ss_pred             cccccchhHHHHHHHH-----HHHHHHHHhhcc
Confidence            9998763212232222     246677776664

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.84  E-value=6.9e-09  Score=102.66  Aligned_cols=133  Identities=11%  Similarity=0.050  Sum_probs=82.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCc-cccc----------------------------cCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRA-FKSK----------------------------VGSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~-F~s~----------------------------~s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+||||++|.|++... |...                            ....++|.......... .+..+++||
T Consensus        39 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiD  117 (483)
T 3p26_A           39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRANFTIVD  117 (483)
T ss_dssp             ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSCEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCceEEEEE
Confidence            69999999999999987521 1100                            00124566665566667 889999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |.-+       ....+    .....++|++|||+++...       +..+....+..+.. +|   ..++|||+|
T Consensus       118 TP---G~~~-------f~~~~----~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~---~~~iIvviN  179 (483)
T 3p26_A          118 AP---GHRD-------FVPNA----IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHNLIIAMN  179 (483)
T ss_dssp             CC---CCGG-------GHHHH----HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT---CCCEEEEEE
T ss_pred             CC---CcHH-------HHHHH----HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC---CCcEEEEEE
Confidence            99   9743       12222    2334679999999999743       34455554444433 22   357999999


Q ss_pred             cCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972          127 RGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus       127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      +.|........+++..     ..+..++...|.
T Consensus       180 K~Dl~~~~~~~~~~i~-----~~~~~~l~~~g~  207 (483)
T 3p26_A          180 KMDNVDWSQQRFEEIK-----SKLLPYLVDIGF  207 (483)
T ss_dssp             CGGGGTTCHHHHHHHH-----HHHHHHHHHHTC
T ss_pred             CcCcccchHHHHHHHH-----HHHHHHHHHcCC
Confidence            9997753212333222     246666766654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.84  E-value=3.1e-09  Score=90.79  Aligned_cols=113  Identities=11%  Similarity=-0.052  Sum_probs=68.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.++|.... ... ...++.........+ ++  ..+.++|||   |..+....           ...
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~~~-----------~~~   76 (207)
T 1vg8_A           14 LGDSGVGKTSLMNQYVNKKFS-NQY-KATIGADFLTKEVMV-DDRLVTMQIWDTA---GQERFQSL-----------GVA   76 (207)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC-SSC-CCCCSEEEEEEEEES-SSCEEEEEEEEEC---SSGGGSCS-----------CCG
T ss_pred             ECcCCCCHHHHHHHHHcCCCC-CCC-CCcccceEEEEEEEE-CCEEEEEEEEeCC---CcHHHHHh-----------HHH
Confidence            699999999999999998633 221 222333444444455 55  478999999   85332110           112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      ...+.|++|||+++.++.+-+. ...+..+....+..  ....++||+|+.|...
T Consensus        77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (207)
T 1vg8_A           77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  131 (207)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence            3468899999999863322221 12233333333221  2357899999999763

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.83  E-value=2.4e-09  Score=105.01  Aligned_cols=115  Identities=15%  Similarity=0.048  Sum_probs=75.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe-EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ-VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr-~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|.+|+||||++|.|+|.+...+. ...+.|.........+ .+. .+++||||   |+.|.........+.    ....
T Consensus        40 vG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~l~liDTp---G~~d~~~l~~~~~~~----~~~~  110 (423)
T 3qq5_A           40 AGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMEL-HPIGPVTLVDTP---GLDDVGELGRLRVEK----ARRV  110 (423)
T ss_dssp             ECSCSTTTTTTTTSSCC--------------CCCCEEEEEE-TTTEEEEEEECS---STTCCCTTCCCCHHH----HHHH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEE-CCCCeEEEEECc---CCCcccchhHHHHHH----HHHH
Confidence            699999999999999998754332 2234555666666677 655 99999999   987653211110111    1123


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.|++|||+++  .++..+...+..+.+.     ...+|||+|+.|....
T Consensus       111 l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~  155 (423)
T 3qq5_A          111 FYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGE  155 (423)
T ss_dssp             HTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTC
T ss_pred             HhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCc
Confidence            4579999999987  5777788888887764     5679999999998765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.83  E-value=3.6e-08  Score=81.66  Aligned_cols=139  Identities=14%  Similarity=0.019  Sum_probs=78.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |..+.......          
T Consensus        14 v~G~~~~GKssli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~Dt~---G~~~~~~~~~~----------   76 (181)
T 2fn4_A           14 VVGGGGVGKSALTIQFIQSY-FVSDYD--PTIEDSYTKICSV-DGIPARLDILDTA---GQEEFGAMREQ----------   76 (181)
T ss_dssp             EEECTTSSHHHHHHHHHHSS-CCSSCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTTTSCCHHH----------
T ss_pred             EECCCCCCHHHHHHHHHhCc-CccccC--CCcCceEEEEEEE-CCEEEEEEEEECC---CchhhHHHHHH----------
Confidence            36999999999999999874 433221  2222222344556 764  78889999   96543221111          


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                       ...+.|++|+|+++.++-+-.. ...+..+...+. ..-..++||+|+.|.....  .+       .......+....+
T Consensus        77 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~v-------~~~~~~~~~~~~~  145 (181)
T 2fn4_A           77 -YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQR--QV-------PRSEASAFGASHH  145 (181)
T ss_dssp             -HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHHTT
T ss_pred             -HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc--cc-------CHHHHHHHHHHcC
Confidence             1135799999999873221111 112222222222 1234789999999976431  11       0123445555566


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -.|+...-++
T Consensus       146 ~~~~~~Sa~~  155 (181)
T 2fn4_A          146 VAYFEASAKL  155 (181)
T ss_dssp             CEEEECBTTT
T ss_pred             CeEEEecCCC
Confidence            6666655544

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.82  E-value=2.1e-09  Score=91.53  Aligned_cols=140  Identities=9%  Similarity=-0.099  Sum_probs=77.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      .+|.+||||||++|.+++........+  ..+.........+. .+..+.++|||   |..       .    .......
T Consensus        28 v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~---G~~-------~----~~~~~~~   91 (191)
T 3dz8_A           28 IIGNSSVGKTSFLFRYADDTFTPAFVS--TVGIDFKVKTVYRHEKRVKLQIWDTA---GQE-------R----YRTITTA   91 (191)
T ss_dssp             EEESTTSSHHHHHHHHHHHTTCCCEEE--EETTTEEEEEEEETTTTEEEEEECHH---HHH-------H----CHHHHHH
T ss_pred             EECCCCcCHHHHHHHHhcCCCCcccCC--CeeeEEEEEEEEECCEEEEEEEEeCC---ChH-------H----HHHHHHH
Confidence            369999999999999998653221111  11222222333331 34579999999   831       1    1112223


Q ss_pred             cCCCCeEEEEEEeCCCCCCHH-HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEE-EGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~e-e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++-+-+ -...+..+....+  ....+|||.|+.|.....  .    +   .....+.+....+-
T Consensus        92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~--~----~---~~~~~~~~~~~~~~  160 (191)
T 3dz8_A           92 YYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEER--V----V---PTEKGQLLAEQLGF  160 (191)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHTC
T ss_pred             HHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc--c----c---CHHHHHHHHHHcCC
Confidence            346889999999987322211 1223333333221  245789999999965431  1    1   11234566666676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+...-++
T Consensus       161 ~~~~~Sa~~  169 (191)
T 3dz8_A          161 DFFEASAKE  169 (191)
T ss_dssp             EEEECBTTT
T ss_pred             eEEEEECCC
Confidence            666555443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.82  E-value=9.8e-09  Score=84.32  Aligned_cols=135  Identities=14%  Similarity=-0.020  Sum_probs=66.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.++|.......  ....+..  .....+ ++.  .+.++|||   |.....        .+   ...
T Consensus         8 vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~--~~~~~~-~~~~~~~~i~D~~---g~~~~~--------~~---~~~   68 (166)
T 3q72_A            8 LGAPGVGKSALARIFGGVEDGPEA--EAAGHTY--DRSIVV-DGEEASLMVYDIW---EQDGGR--------WL---PGH   68 (166)
T ss_dssp             EESTTSSHHHHHHHHCCC------------CEE--EEEEEE-TTEEEEEEEEECC-------------------------
T ss_pred             ECCCCCCHHHHHHHHcCccccCCC--Cccccce--EEEEEE-CCEEEEEEEEECC---CCccch--------hh---hhh
Confidence            699999999999999987643321  1122221  223345 554  67899999   854321        01   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ...+.|++++|+++.++-+-+  ....++..+...  ..-..++||.|+.|.......+         ......+....+
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~  137 (166)
T 3q72_A           69 CMAMGDAYVIVYSVTDKGSFE--KASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS---------VDEGRACAVVFD  137 (166)
T ss_dssp             ----CCEEEEEEETTCHHHHH--HHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSC---------HHHHHHHHHHTT
T ss_pred             hhhhCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEeccccccccccC---------HHHHHHHHHHhC
Confidence            346789999999987332211  122222222211  1235789999999976542111         122345555566


Q ss_pred             CeEEEEcCC
Q 044972          159 NRRVLFDNK  167 (307)
Q Consensus       159 ~R~~~fnNk  167 (307)
                      -.|+...-+
T Consensus       138 ~~~~~~Sa~  146 (166)
T 3q72_A          138 CKFIETSAA  146 (166)
T ss_dssp             CEEEECBGG
T ss_pred             CcEEEeccC
Confidence            555544433

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.82  E-value=3.4e-08  Score=83.67  Aligned_cols=109  Identities=14%  Similarity=0.014  Sum_probs=69.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.++|......     +.|.........+ ++..+.++|||   |....    ..    +   .....
T Consensus        22 vG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~---G~~~~----~~----~---~~~~~   81 (181)
T 1fzq_A           22 LGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIG---GQRKI----RP----Y---WRSYF   81 (181)
T ss_dssp             EESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECS---SCGGG----HH----H---HHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECC---CCHHH----HH----H---HHHHh
Confidence            69999999999999998753211     1222233445567 89999999999   86421    11    1   11233


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|+|+++.++-+-++  +..++..++...  .-..++||.|+.|....
T Consensus        82 ~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  132 (181)
T 1fzq_A           82 ENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA  132 (181)
T ss_dssp             TTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred             CCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence            67999999999873322221  223444443321  23579999999997654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.81  E-value=2.4e-08  Score=85.79  Aligned_cols=142  Identities=13%  Similarity=-0.008  Sum_probs=80.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++... ..... ..++.... ....+ +|.  .+.++|||   |..+...           ....
T Consensus        31 vG~~~~GKSsli~~l~~~~~-~~~~~-~t~~~~~~-~~~~~-~~~~~~l~i~Dt~---G~~~~~~-----------~~~~   92 (201)
T 2gco_A           31 VGDGACGKTCLLIVFSKDQF-PEVYV-PTVFENYI-ADIEV-DGKQVELALWDTA---GQEDYDR-----------LRPL   92 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSSC-CSSCC-CSSCCCCE-EEEEE-TTEEEEEEEECCC---CSGGGTT-----------TGGG
T ss_pred             ECCCCCCHHHHHHHHHhCcC-CcccC-CcccceEE-EEEEE-CCEEEEEEEEECC---CchhHHH-----------HHHH
Confidence            69999999999999998763 22211 12222222 23455 664  78899999   8532110           1123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcC----CC-CCchHHHH
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLG----PE-CPKPLKEI  153 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~----~~-~~~~Lk~L  153 (307)
                      ...+.|++|||+++.++-+-++  ...+..+....   ....++||+|+.|.+..  ....+.+.    .. .......+
T Consensus        93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~~  167 (201)
T 2gco_A           93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSEEGRDM  167 (201)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcC--ccchhhhcccccCcCCHHHHHHH
Confidence            4568999999999873222221  22334444332   14578999999998765  22222221    10 11244566


Q ss_pred             HHhcCC-eEEEEcCC
Q 044972          154 LQLCDN-RRVLFDNK  167 (307)
Q Consensus       154 i~~Cg~-R~~~fnNk  167 (307)
                      .+..+. .|+...-+
T Consensus       168 ~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          168 ANRISAFGYLECSAK  182 (201)
T ss_dssp             HHHTTCSEEEECCTT
T ss_pred             HHhCCCcEEEEeeCC
Confidence            666665 55544443

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.81  E-value=4.4e-09  Score=89.80  Aligned_cols=138  Identities=13%  Similarity=-0.009  Sum_probs=77.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....+ +.+.. ......+ ++  ..+.++|||   |..+ .    .+   ....  
T Consensus        33 v~G~~~vGKSsli~~l~~~~-~~~~~~~-t~~~~-~~~~~~~-~~~~~~~~l~Dt~---G~~~-~----~~---~~~~--   95 (196)
T 2atv_A           33 IFGRAGVGKSALVVRFLTKR-FIWEYDP-TLEST-YRHQATI-DDEVVSMEILDTA---GQED-T----IQ---REGH--   95 (196)
T ss_dssp             EECCTTSSHHHHHHHHHHSC-CCSCCCT-TCCEE-EEEEEEE-TTEEEEEEEEECC---CCCC-C----HH---HHHH--
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCcccCC-CCCce-EEEEEEE-CCEEEEEEEEECC---CCCc-c----cc---hhhh--
Confidence            36999999999999999876 4322111 11211 2223445 65  468999999   9865 1    11   1111  


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                        ..+.|++|||+++.++-+-++ ...+..+..... ..-..+|||+|+.|.......+         ......+.+..+
T Consensus        96 --~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~---------~~~~~~~~~~~~  163 (196)
T 2atv_A           96 --MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVS---------TEEGEKLATELA  163 (196)
T ss_dssp             --HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSC---------HHHHHHHHHHHT
T ss_pred             --hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccC---------HHHHHHHHHHhC
Confidence              234699999999873222111 122333333322 1245789999999976431011         123455566666


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -.|+..+-++
T Consensus       164 ~~~~~~Sa~~  173 (196)
T 2atv_A          164 CAFYECSACT  173 (196)
T ss_dssp             SEEEECCTTT
T ss_pred             CeEEEECCCc
Confidence            6665555443

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.81  E-value=2.9e-09  Score=101.59  Aligned_cols=121  Identities=12%  Similarity=0.058  Sum_probs=74.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|++.+...+...  ..|.........++++..++|+|||   |+.+.......+.....+.+    
T Consensus       164 vG~~nvGKSTLln~L~~~~~~i~~~~--ftTl~p~~g~v~~~~~~~~~l~DtP---G~i~~a~~~~~l~~~fl~~i----  234 (342)
T 1lnz_A          164 VGFPSVGKSTLLSVVSSAKPKIADYH--FTTLVPNLGMVETDDGRSFVMADLP---GLIEGAHQGVGLGHQFLRHI----  234 (342)
T ss_dssp             ESSTTSSHHHHHHHSEEECCEESSTT--SSCCCCCEEEEECSSSCEEEEEEHH---HHHHHTTCTTTTHHHHHHHH----
T ss_pred             eCCCCCCHHHHHHHHHcCCCccccCC--ccccCceEEEEEeCCCceEEEecCC---CCcccccccchhHHHHHHHH----
Confidence            79999999999999998775443322  2344555556667334899999999   97431111111222222222    


Q ss_pred             CCCeEEEEEEeCCC---CCCHHHHHH-HHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRN---RFSEEEGAA-IHSLESLFGKK-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~---RfT~ee~~~-l~~i~~~FG~~-~~~~~IVLfT~~D~L~~  133 (307)
                      ...+++|+|+++.+   +-+-++... +..+.. +++. .-..+|||+|+.|.+..
T Consensus       235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~-~~~~l~~~p~ilV~NK~Dl~~~  289 (342)
T 1lnz_A          235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE-YNLRLTERPQIIVANKMDMPEA  289 (342)
T ss_dssp             HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH-SCSSTTTSCBCBEEECTTSTTH
T ss_pred             HhccEEEEEEECCcccccChHHHHHHHHHHHHH-hhhhhcCCCEEEEEECccCCCC
Confidence            34799999999863   233333332 333333 3433 45679999999997643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.80  E-value=5.4e-08  Score=84.00  Aligned_cols=110  Identities=14%  Similarity=0.044  Sum_probs=66.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |..... ..++... .....+ +|.  .+.++|||   |..+...           ....
T Consensus        31 vG~~~~GKSsli~~l~~~~-~~~~~~-~t~~~~~-~~~~~~-~~~~~~~~i~Dt~---G~~~~~~-----------~~~~   92 (207)
T 2fv8_A           31 VGDGACGKTCLLIVFSKDE-FPEVYV-PTVFENY-VADIEV-DGKQVELALWDTA---GQEDYDR-----------LRPL   92 (207)
T ss_dssp             EECTTSSHHHHHHHHHHSS-CC--------CCEE-EEEEEE-TTEEEEEEEEECT---TCTTCTT-----------TGGG
T ss_pred             ECcCCCCHHHHHHHHhcCC-CCCcCC-CcccceE-EEEEEE-CCEEEEEEEEECC---CcHHHHH-----------HHHh
Confidence            6999999999999999876 332211 1112222 223455 664  78899999   9754321           1123


Q ss_pred             cCCCCeEEEEEEeCCCC--CCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNR--FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~R--fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|||+++.++  |..-+...+..+....   .-..++||+|+.|....
T Consensus        93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A           93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSD  144 (207)
T ss_dssp             GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGC
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhcc
Confidence            45689999999998732  2222223344444432   14578999999998765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.79  E-value=2.3e-08  Score=87.53  Aligned_cols=137  Identities=11%  Similarity=-0.088  Sum_probs=77.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++........  ..++.........+ +|  ..+.|+|||   |.......           ...
T Consensus        19 ~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~~   81 (223)
T 3cpj_B           19 IGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLEI-EGKRIKAQIWDTA---GQERYRAI-----------TSA   81 (223)
T ss_dssp             ESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCT---TTTTTTCC-----------CGG
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECC---Cccchhhh-----------HHH
Confidence            6999999999999999876332211  22333344444556 77  588999999   86432110           123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++.+-++ ...+..+....+  .-..+|||+|+.|.....  .    +   .......+....+-
T Consensus        82 ~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~--~----v---~~~~~~~~~~~~~~  150 (223)
T 3cpj_B           82 YYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHLR--A----V---PTEESKTFAQENQL  150 (223)
T ss_dssp             GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGC--C----S---CHHHHHHHHHHTTC
T ss_pred             HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc--c----c---CHHHHHHHHHHcCC
Confidence            4568999999999863322222 122333333222  234789999999976431  1    1   11234556666665


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      .|+...-+
T Consensus       151 ~~~~~Sa~  158 (223)
T 3cpj_B          151 LFTETSAL  158 (223)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCC
Confidence            66555443

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.78  E-value=2.8e-08  Score=98.62  Aligned_cols=128  Identities=20%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccc----c-cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKS----K-VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s----~-~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      +|.+|+||||++|.|+|...+..    . ....+.|.........+ +++.+++||||   |.       ++....    
T Consensus        25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtP---Gh-------~~~~~~----   89 (482)
T 1wb1_A           25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAP---GH-------ADLIRA----   89 (482)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCS---SH-------HHHHHH----
T ss_pred             ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECC---Ch-------HHHHHH----
Confidence            69999999999999999872110    0 01123455544445667 89999999999   85       222222    


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      +.....+.|++|||+++...+..+....+..+.. +|   ..+ ||++|+.|....  ..++...     ..+++++...
T Consensus        90 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~---ip~-IvviNK~Dl~~~--~~~~~~~-----~~l~~~l~~~  157 (482)
T 1wb1_A           90 VVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN---IPI-IVVITKSDNAGT--EEIKRTE-----MIMKSILQST  157 (482)
T ss_dssp             HHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCB-CEEEECTTSSCH--HHHHHHH-----HHHHHHHHHS
T ss_pred             HHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC---CCE-EEEEECCCcccc--hhHHHHH-----HHHHHHHhhh
Confidence            2334568999999999976677777777665544 33   334 999999998753  2233222     1356666654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.78  E-value=5e-08  Score=80.22  Aligned_cols=140  Identities=17%  Similarity=0.080  Sum_probs=74.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.++|...-...  ..+.|.........+ +|.  .+.++|||   |..+...   .    +..   
T Consensus         7 ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~---g~~~~~~---~----~~~---   70 (169)
T 3q85_A            7 LVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMV-DKEEVTLIVYDIW---EQGDAGG---W----LQD---   70 (169)
T ss_dssp             EECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCC---CC---------------C---
T ss_pred             EECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEE-CCeEEEEEEEECC---Cccccch---h----hhh---
Confidence            3799999999999999986532211  122334444445556 664  67789999   8754211   0    110   


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      ....+.|++|+|+++.++-+-  .....++..+....  .-..++||.|+.|..+....         .......+.+..
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---------~~~~~~~~~~~~  139 (169)
T 3q85_A           71 HCLQTGDAFLIVFSVTDRRSF--SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV---------SLEEGRHLAGTL  139 (169)
T ss_dssp             HHHHHCSEEEEEEETTCHHHH--HTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCS---------CHHHHHHHHHHT
T ss_pred             hhhccCCEEEEEEECCChHHH--HHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccC---------CHHHHHHHHHHc
Confidence            112347999999998732111  11223333333221  14578999999997543111         122355666777


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +..|+...-++
T Consensus       140 ~~~~~~~Sa~~  150 (169)
T 3q85_A          140 SCKHIETSAAL  150 (169)
T ss_dssp             TCEEEECBTTT
T ss_pred             CCcEEEecCcc
Confidence            77776555443

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.78  E-value=2.2e-08  Score=86.28  Aligned_cols=108  Identities=11%  Similarity=0.012  Sum_probs=65.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+.|.+ |...    ..|.........+ +|..+.++|||   |......        +   .....
T Consensus        31 vG~~~vGKSsLi~~l~~~~-~~~~----~~t~~~~~~~~~~-~~~~l~i~Dt~---G~~~~~~--------~---~~~~~   90 (198)
T 1f6b_A           31 LGLDNAGKTTLLHMLKDDR-LGQH----VPTLHPTSEELTI-AGMTFTTFDLG---GHIQARR--------V---WKNYL   90 (198)
T ss_dssp             EEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEEC---C----CC--------G---GGGGG
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCcc----CCCCCceeEEEEE-CCEEEEEEECC---CcHhhHH--------H---HHHHH
Confidence            6999999999999999876 3221    1122222345667 89999999999   8643211        0   11234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~  132 (307)
                      .+.|++|||+++.++-+-+  .+..++..+...  ..-..+|||.|+.|...
T Consensus        91 ~~~d~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           91 PAINGIVFLVDCADHERLL--ESKEELDSLMTDETIANVPILILGNKIDRPE  140 (198)
T ss_dssp             GGCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             hcCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence            5889999999986332211  222344444332  12457899999999764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.78  E-value=7.7e-09  Score=89.46  Aligned_cols=111  Identities=21%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEE--EEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVN--VIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~--VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |....  .+.+.........+ +|..+.  ++|||   |..+..           ....
T Consensus        35 vvG~~~~GKSsLi~~l~~~~-~~~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~-----------~~~~   96 (204)
T 4gzl_A           35 VVGDGAVGKTCLLISYTTNA-FPGEY--IPTVFDNYSANVMV-DGKPVNLGLWDTA---GLEDYD-----------RLRP   96 (204)
T ss_dssp             EEESTTSSHHHHHHHHHHSC-CCC-C--CCCSEEEEEEEEEC-C-CEEEEEEEEEC---CSGGGT-----------TTGG
T ss_pred             EECcCCCCHHHHHHHHHhCC-CCCCc--CCeecceeEEEEEE-CCEEEEEEEEECC---CchhhH-----------HHHH
Confidence            36999999999999999764 33221  12222333334455 666555  99999   874321           1122


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|||+++.++-+-++.  ..+..+....   .-..+|||.|+.|....
T Consensus        97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A           97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD  149 (204)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence            345789999999998743332222  2333343332   24578999999997765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.76  E-value=1e-08  Score=96.58  Aligned_cols=109  Identities=11%  Similarity=-0.025  Sum_probs=68.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.|++.. |....    .|.........+ .+..+.|+|||   |-......           .....
T Consensus       171 vG~~~vGKSsLl~~l~~~~-~~~~~----pT~~~~~~~~~~-~~~~l~i~Dt~---G~~~~~~~-----------~~~~~  230 (329)
T 3o47_A          171 VGLDAAGKTTILYKLKLGE-IVTTI----PTIGFNVETVEY-KNISFTVWDVG---GQDKIRPL-----------WRHYF  230 (329)
T ss_dssp             EESTTSSHHHHHHHTCSSC-CEEEE----EETTEEEEEEEE-TTEEEEEEECC--------CCS-----------HHHHH
T ss_pred             ECCCCccHHHHHHHHhCCC-CCCcc----cccceEEEEEec-CcEEEEEEECC---CCHhHHHH-----------HHHHh
Confidence            6999999999999999877 44322    255555566677 88999999999   84321111           11223


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|+||||+++.++-+-+.  +..++..++...  .-..+|||.|+.|....
T Consensus       231 ~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~  281 (329)
T 3o47_A          231 QNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA  281 (329)
T ss_dssp             TTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence            57999999999963322221  222333333322  23468999999997654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.75  E-value=3.3e-08  Score=83.03  Aligned_cols=139  Identities=9%  Similarity=-0.008  Sum_probs=76.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEE---EEeCC--eEEEEEeCCCCCCCCCCCcCHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRT---MLKDG--QVVNVIDTPAIARLFDSSADFEFV   70 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~---~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i   70 (307)
                      .+|.+||||||++|.+.|...-......      ...|........   .+ ++  ..+.++|||   |..+...     
T Consensus        19 vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~-----   89 (198)
T 3t1o_A           19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEV-KGFKTRFHLYTVP---GQVFYNA-----   89 (198)
T ss_dssp             EECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCS-SSCEEEEEEEECC---SCCSCSH-----
T ss_pred             EECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccc-cCCceEEEEEeCC---ChHHHHH-----
Confidence            3699999999999999886432211100      011111111110   12 23  478999999   8643221     


Q ss_pred             HHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhc----cccCCeEEEEEecCCCCCCCcccHHHhcCCCC
Q 044972           71 SKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFG----KKVFDYMIVVFTRGDELEDNDETLEDYLGPEC  146 (307)
Q Consensus        71 ~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG----~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~  146 (307)
                         +   ......+.|++|||+++....+.+....+..+...+-    ...-..+|||.|+.|....  .+         
T Consensus        90 ---~---~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~---------  152 (198)
T 3t1o_A           90 ---S---RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LP---------  152 (198)
T ss_dssp             ---H---HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CC---------
T ss_pred             ---H---HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cC---------
Confidence               1   1224578999999999863333344444444433221    1134578999999996543  11         


Q ss_pred             CchHHHHHHhcCC-eEEEEcC
Q 044972          147 PKPLKEILQLCDN-RRVLFDN  166 (307)
Q Consensus       147 ~~~Lk~Li~~Cg~-R~~~fnN  166 (307)
                      ...++++++..+. .|+...-
T Consensus       153 ~~~~~~~~~~~~~~~~~~~Sa  173 (198)
T 3t1o_A          153 VEMVRAVVDPEGKFPVLEAVA  173 (198)
T ss_dssp             HHHHHHHHCTTCCSCEEECBG
T ss_pred             HHHHHHHHHhcCCceEEEEec
Confidence            2234555555555 5554443

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.75  E-value=2e-08  Score=96.91  Aligned_cols=131  Identities=14%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             CCCCCCcHHHHHHHHHCC-------Cccccc---c-----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972            3 ACEYIKICTTTGNSILGR-------RAFKSK---V-----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF   67 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~-------~~F~s~---~-----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~   67 (307)
                      +|.+|+||||++|.|++.       ..|...   .     ...+.|.........+ ++..+++||||   |..+-    
T Consensus        17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtp---G~~~f----   88 (405)
T 2c78_A           17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCP---GHADY----   88 (405)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECC---CSGGG----
T ss_pred             EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECC---ChHHH----
Confidence            699999999999999983       112100   0     0123444443444455 78999999999   97541    


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCC
Q 044972           68 EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECP  147 (307)
Q Consensus        68 ~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~  147 (307)
                         ...+.    ....++|++|||+++......+....+..+...    -..++||++|+.|....  ...-+.+.    
T Consensus        89 ---~~~~~----~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~----~ip~iivviNK~Dl~~~--~~~~~~~~----  151 (405)
T 2c78_A           89 ---IKNMI----TGAAQMDGAILVVSAADGPMPQTREHILLARQV----GVPYIVVFMNKVDMVDD--PELLDLVE----  151 (405)
T ss_dssp             ---HHHHH----HHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT----TCCCEEEEEECGGGCCC--HHHHHHHH----
T ss_pred             ---HHHHH----HHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc----CCCEEEEEEECccccCc--HHHHHHHH----
Confidence               12222    234578999999999766777766666555442    23458899999998753  22212221    


Q ss_pred             chHHHHHHhcC
Q 044972          148 KPLKEILQLCD  158 (307)
Q Consensus       148 ~~Lk~Li~~Cg  158 (307)
                      ..++++++.++
T Consensus       152 ~~~~~~l~~~~  162 (405)
T 2c78_A          152 MEVRDLLNQYE  162 (405)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            14566777665

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.75  E-value=3.6e-08  Score=96.59  Aligned_cols=149  Identities=15%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCC----CCCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCCcCH---HHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGS----SEDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSSADF---EFVS   71 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~----~svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~~~~---~~i~   71 (307)
                      .+|++||||||++|+|+|......+...    ...|.........+. +|  ..++|+|||   |+.+.....   ..+.
T Consensus        36 lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~---g~~~~~~~~~~~~~i~  112 (418)
T 2qag_C           36 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP---GFGDAVDNSNCWQPVI  112 (418)
T ss_dssp             EECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC--------------CHHHH
T ss_pred             EECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeech---hhhhhccchhhHHHHH
Confidence            4799999999999999998643222110    011222111111110 23  278999999   886542110   1222


Q ss_pred             HHHHHHHH-------------hcCCCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCccc
Q 044972           72 KEIVKCIG-------------MAKDGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDET  137 (307)
Q Consensus        72 ~eI~kcv~-------------ls~pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~s  137 (307)
                      ..|...+.             ...|..|++||++... ..|+..+...++.+.    .  ..++|+|.|++|.+..  ..
T Consensus       113 ~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~--~v~iIlVinK~Dll~~--~e  184 (418)
T 2qag_C          113 DYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E--KVNIIPLIAKADTLTP--EE  184 (418)
T ss_dssp             HHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T--TSEEEEEEESTTSSCH--HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----c--cCcEEEEEEcccCccH--HH
Confidence            22221111             1124456666666543 368888866665553    1  4679999999998865  33


Q ss_pred             HHHhcCCCCCchHHHHHHhcCCeEEEEcC
Q 044972          138 LEDYLGPECPKPLKEILQLCDNRRVLFDN  166 (307)
Q Consensus       138 ie~yl~~~~~~~Lk~Li~~Cg~R~~~fnN  166 (307)
                      +..|..     .+++.+...|-+++.|..
T Consensus       185 v~~~k~-----~i~~~~~~~~i~~~~~sa  208 (418)
T 2qag_C          185 CQQFKK-----QIMKEIQEHKIKIYEFPE  208 (418)
T ss_dssp             HHHHHH-----HHHHHHHHHTCCCCCCC-
T ss_pred             HHHHHH-----HHHHHHHHcCCeEEeCCC
Confidence            444332     244555555656655553

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.74  E-value=4.5e-09  Score=91.62  Aligned_cols=135  Identities=12%  Similarity=-0.072  Sum_probs=74.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCC-CCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSS-EDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~-svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|.+||||||++|.+++.. |....++. +.|..  .....+ ++  ..+.++|||   |.........          
T Consensus        20 v~G~~~~GKSsli~~~~~~~-~~~~~~~t~~~~~~--~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~~----------   82 (221)
T 3gj0_A           20 LVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVH--PLVFHT-NRGPIKFNVWDTA---GQEKFGGLRD----------   82 (221)
T ss_dssp             EEECTTSSHHHHHTTBHHHH-HTCEEETTTTEEEE--EEEEEE-TTEEEEEEEEEEC---SGGGTSCCCH----------
T ss_pred             EECCCCCCHHHHHHHHHcCC-CCCCCCCccceeEE--EEEEEE-CCEEEEEEEEeCC---ChHHHhHHHH----------
Confidence            36999999999999965432 32222221 22222  222333 33  578999999   8543221111          


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                       ....+.|++|||+++.++.+-+. ...+..+...+.   -..+|||.|+.|....  .. .        .....+....
T Consensus        83 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~-~--------~~~~~~~~~~  147 (221)
T 3gj0_A           83 -GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR--KV-K--------AKSIVFHRKK  147 (221)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC--SS-C--------GGGCCHHHHH
T ss_pred             -HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc--cc-c--------HHHHHHHHHc
Confidence             12247899999999874322222 222333333321   3578999999997654  11 1        1223445556


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +..|+...-++
T Consensus       148 ~~~~~~~Sa~~  158 (221)
T 3gj0_A          148 NLQYYDISAKS  158 (221)
T ss_dssp             TCEEEECBGGG
T ss_pred             CCEEEEEeCCC
Confidence            66776655443

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.74  E-value=2e-08  Score=97.48  Aligned_cols=83  Identities=11%  Similarity=-0.077  Sum_probs=41.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEE---------------------EEeCC---eEEEEEeCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRT---------------------MLKDG---QVVNVIDTPAIA   58 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~---------------------~~~~G---r~v~VIDTP~~~   58 (307)
                      +|.|||||||++|.|+|.++..+..  ..+|.....+..                     .+ ++   .++.++|||   
T Consensus         6 vG~pnvGKSTL~n~L~~~~~~~~~~--p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~-~~~~~~~i~lvDtp---   79 (397)
T 1wxq_A            6 VGKPNVGKSTFFSAATLVDVEIANY--PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR-NGLALIPVKMVDVA---   79 (397)
T ss_dssp             EECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE-TTEEEEEEEEEECC---
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCC--CCcccCCceEEEeeccCCchHHhhhhccccccccc-CCcceEEEEEEECC---
Confidence            7999999999999999988332221  123444433322                     12 33   479999999   


Q ss_pred             CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      |+.+.....    +.+...+.....+.|++|+|+++.
T Consensus        80 G~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~  112 (397)
T 1wxq_A           80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDAT  112 (397)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETT
T ss_pred             Ccccchhhh----hhHHHHHHHHHhcCCEEEEEEecc
Confidence            986422111    112222223457899999999986

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.73  E-value=3.8e-08  Score=94.94  Aligned_cols=131  Identities=12%  Similarity=0.088  Sum_probs=81.1

Q ss_pred             CCCCCCcHHHHHHHHHCCC------cccc----cc----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGRR------AFKS----KV----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~------~F~s----~~----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+|+||||++|.|++..      .|..    ..    ...+.|.........+ +++.+++||||   |..+      
T Consensus         9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtp---G~~~------   78 (397)
T 1d2e_A            9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCP---GHAD------   78 (397)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECS---SHHH------
T ss_pred             EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECC---ChHH------
Confidence            6999999999999999741      1210    00    0123343333333444 67999999999   8632      


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                       ....    +.......|++|||+++......+....+..+.. .   -..++||+.|+.|....  ...-+.+.    .
T Consensus        79 -f~~~----~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~---~vp~iivviNK~Dl~~~--~~~~~~~~----~  143 (397)
T 1d2e_A           79 -YVKN----MITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-I---GVEHVVVYVNKADAVQD--SEMVELVE----L  143 (397)
T ss_dssp             -HHHH----HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-T---TCCCEEEEEECGGGCSC--HHHHHHHH----H
T ss_pred             -HHHH----HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-c---CCCeEEEEEECcccCCC--HHHHHHHH----H
Confidence             2222    2345678999999999976677776666655543 2   24457899999997753  22111221    2


Q ss_pred             hHHHHHHhcC
Q 044972          149 PLKEILQLCD  158 (307)
Q Consensus       149 ~Lk~Li~~Cg  158 (307)
                      .++++++.++
T Consensus       144 ~~~~~l~~~~  153 (397)
T 1d2e_A          144 EIRELLTEFG  153 (397)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            4667777665

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.71  E-value=4.5e-08  Score=85.05  Aligned_cols=137  Identities=10%  Similarity=-0.020  Sum_probs=79.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.... ..+++.........+ +|.  .+.++|||   |...           .......
T Consensus        32 vG~~~vGKSsLi~~l~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~---G~~~-----------~~~~~~~   94 (201)
T 2ew1_A           32 IGNAGVGKTCLVRRFTQGL-FPPGQ-GATIGVDFMIKTVEI-NGEKVKLQIWDTA---GQER-----------FRSITQS   94 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSS-CCTTC-CCCCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGG-----------GHHHHGG
T ss_pred             ECcCCCCHHHHHHHHHhCC-CCCCC-CCccceeEEEEEEEE-CCEEEEEEEEECC---CcHH-----------HHHHHHH
Confidence            6999999999999999875 43221 223333444445566 774  78999999   8521           1112334


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++-+-+. ...+..+.....  .-..+|||.|+.|.....  .    +   .....+.+....+-
T Consensus        95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~--~----v---~~~~~~~~~~~~~~  163 (201)
T 2ew1_A           95 YYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERR--E----V---SQQRAEEFSEAQDM  163 (201)
T ss_dssp             GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC--S----S---CHHHHHHHHHHHTC
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc--c----c---CHHHHHHHHHHcCC
Confidence            5678999999999863322111 122333333221  235688999999975431  1    1   11234455555665


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      .|+...-+
T Consensus       164 ~~~~~Sa~  171 (201)
T 2ew1_A          164 YYLETSAK  171 (201)
T ss_dssp             CEEECCTT
T ss_pred             EEEEEeCC
Confidence            66555443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.71  E-value=2.5e-08  Score=100.33  Aligned_cols=111  Identities=12%  Similarity=0.011  Sum_probs=75.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccc----------------ccc----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFK----------------SKV----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~----------------s~~----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|.+||||||+.|.|++.....                +..    ...+.|.........+ .+..+++||||   |..|
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP---G~~d   94 (528)
T 3tr5_A           19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP---GHAD   94 (528)
T ss_dssp             EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC---CSTT
T ss_pred             ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC---Cchh
Confidence            6999999999999998321110                000    0012333344456678 89999999999   9876


Q ss_pred             CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..  .     +.    ..+....|++|+|+++....+.+....+..+...     -..+||++|+.|....
T Consensus        95 f~--~-----~~----~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           95 FT--E-----DT----YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CC--H-----HH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCS
T ss_pred             HH--H-----HH----HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc
Confidence            43  1     12    2234578999999999867888777777665542     3578999999997543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.70  E-value=1.6e-08  Score=97.55  Aligned_cols=112  Identities=15%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccc-ccC-----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKS-KVG-----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s-~~s-----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      +|.+|+||||++|.|+|...... +..                 .......|....... .++.+++||||   |..+  
T Consensus        14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtP---Gh~~--   87 (403)
T 3sjy_A           14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAP---GHEV--   87 (403)
T ss_dssp             ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECC---CCGG--
T ss_pred             ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECC---CcHH--
Confidence            69999999999999999532110 000                 000000111100011 23789999999   8422  


Q ss_pred             cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                           ....+.    ....++|++|||+++...+ ..+....+..+.. +|   .+++||++|+.|....
T Consensus        88 -----~~~~~~----~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~---~~~iivviNK~Dl~~~  144 (403)
T 3sjy_A           88 -----LMATML----SGAALMDGAILVVAANEPFPQPQTREHFVALGI-IG---VKNLIIVQNKVDVVSK  144 (403)
T ss_dssp             -----GHHHHH----HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGSCH
T ss_pred             -----HHHHHH----HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cC---CCCEEEEEECccccch
Confidence                 222222    2336799999999998555 4445555544433 33   2579999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.70  E-value=1e-08  Score=85.47  Aligned_cols=110  Identities=16%  Similarity=0.041  Sum_probs=60.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....+  .+.........+ +|.  .+.++|||   |..+...           ....
T Consensus        14 ~G~~~~GKssl~~~~~~~~-~~~~~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~-----------~~~~   75 (182)
T 3bwd_D           14 VGDGAVGKTCLLISYTSNT-FPTDYVP--TVFDNFSANVVV-NGATVNLGLWDTA---GQEDYNR-----------LRPL   75 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CC------------CBCCCC--------CEEECCC---C-CTTTT-----------TGGG
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCCCC--eeeeeEEEEEEE-CCEEEEEEEEECC---CChhhhh-----------hHHh
Confidence            6999999999999999875 4332211  111111111223 444  45699999   8643221           1123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|||+++.++-+-+..  ..+..+...++   ...++||.|+.|....
T Consensus        76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC
Confidence            45688999999998633222221  23344444322   4578999999997654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.69  E-value=2.2e-08  Score=92.30  Aligned_cols=146  Identities=15%  Similarity=0.084  Sum_probs=82.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCC-----CCCCceeEEEEEEEeCC----eEEEEEeCCCCCCCCCCCc---CHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGS-----SEDTKTCEMQRTMLKDG----QVVNVIDTPAIARLFDSSA---DFEF   69 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~-----~svT~~c~~~~~~~~~G----r~v~VIDTP~~~Gl~Dt~~---~~~~   69 (307)
                      ++|++|+||||++|+|+|.....++...     .+.+.. ....+.++..    ..++|+|||   ||.+...   ..+.
T Consensus         7 lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~---~~g~~~~~~~~~~~   82 (270)
T 3sop_A            7 VVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTP---GFGDQINNENCWEP   82 (270)
T ss_dssp             EEESSSSSHHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCC---C--CCSBCTTCSHH
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEech---hhhhhcccHHHHHH
Confidence            5899999999999999997543332100     011111 1111222111    378999999   8865321   1122


Q ss_pred             HHHH----HHHHHH-hcCC---------CCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 044972           70 VSKE----IVKCIG-MAKD---------GIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDN  134 (307)
Q Consensus        70 i~~e----I~kcv~-ls~p---------Gpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~  134 (307)
                      +...    ..+... ..+.         ..|+.||+++-. ..++..|...++.+..     . ..+|+|+|++|.+.. 
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~-----~-~~vI~Vi~K~D~lt~-  155 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK-----V-VNIIPVIAKADTMTL-  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-----T-SEEEEEETTGGGSCH-
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh-----c-CcEEEEEeccccCCH-
Confidence            2222    222111 1111         358888888643 4789999888877765     2 789999999999976 


Q ss_pred             cccHHHhcCCCCCchHHHHHHhcCCeEEEE
Q 044972          135 DETLEDYLGPECPKPLKEILQLCDNRRVLF  164 (307)
Q Consensus       135 ~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~f  164 (307)
                       ..+..+..     .+++.+...+-.++-|
T Consensus       156 -~e~~~~k~-----~i~~~l~~~~i~i~~~  179 (270)
T 3sop_A          156 -EEKSEFKQ-----RVRKELEVNGIEFYPQ  179 (270)
T ss_dssp             -HHHHHHHH-----HHHHHHHHTTCCCSSC
T ss_pred             -HHHHHHHH-----HHHHHHHHcCccccCC
Confidence             44555443     3555566666555543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.69  E-value=2.4e-08  Score=84.34  Aligned_cols=142  Identities=12%  Similarity=-0.025  Sum_probs=78.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|++||||||++|.+++.. |.....   .|.... .....+ ++  ..+.++|||   |..+...           ...
T Consensus        13 ~G~~~vGKSsli~~l~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~-----------~~~   73 (184)
T 1m7b_A           13 VGDSQCGKTALLHVFAKDC-FPENYV---PTVFENYTASFEI-DTQRIELSLWDTS---GSPYYDN-----------VRP   73 (184)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCSSCC---CCSEEEEEEEEEC-SSCEEEEEEEEEC---CSGGGTT-----------TGG
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCCC---CccceeEEEEEEE-CCEEEEEEEEECC---CChhhhh-----------hHH
Confidence            6999999999999999865 432221   122221 122344 44  478999999   8632110           012


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCC---C-CCchHHHH
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGP---E-CPKPLKEI  153 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~---~-~~~~Lk~L  153 (307)
                      ....+.|++|||+++.++-+-++  ...+..+....   --..+|||.|+.|...+. ..+.++-..   . .....+.+
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~  149 (184)
T 1m7b_A           74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGANM  149 (184)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHHH
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHHHHH
Confidence            34578999999999873322222  12223333332   135789999999976541 222222110   0 11235566


Q ss_pred             HHhcC-CeEEEEcCC
Q 044972          154 LQLCD-NRRVLFDNK  167 (307)
Q Consensus       154 i~~Cg-~R~~~fnNk  167 (307)
                      .+..+ ..|+...-+
T Consensus       150 ~~~~~~~~~~e~Sa~  164 (184)
T 1m7b_A          150 AKQIGAATYIECSAL  164 (184)
T ss_dssp             HHHHTCSEEEECBTT
T ss_pred             HHHcCCcEEEEeeec
Confidence            66665 355554444

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.68  E-value=1.4e-07  Score=80.28  Aligned_cols=135  Identities=13%  Similarity=-0.004  Sum_probs=78.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....   .|.........+ +|.  .+.++|||   |..+..            .  
T Consensus        25 ivG~~~vGKSsL~~~~~~~~-~~~~~~---~t~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~------------~--   82 (184)
T 3ihw_A           25 IVGNLSSGKSALVHRYLTGT-YVQEES---PEGGRFKKEIVV-DGQSYLLLIRDEG---GPPELQ------------F--   82 (184)
T ss_dssp             EECCTTSCHHHHHHHHHHSS-CCCCCC---TTCEEEEEEEEE-TTEEEEEEEEECS---SSCCHH------------H--
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCCCcC---CCcceEEEEEEE-CCEEEEEEEEECC---CChhhh------------e--
Confidence            37999999999999999875 432222   232222345566 885  45669999   874311            1  


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                        ..+.|++|||+++.++-+-++ ...+..+....+ .....+|||.|+.|........    +   .......+....+
T Consensus        83 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~----v---~~~~~~~~~~~~~  152 (184)
T 3ihw_A           83 --AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRV----I---DDSRARKLSTDLK  152 (184)
T ss_dssp             --HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCC----S---CHHHHHHHHHHTT
T ss_pred             --ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccc----c---CHHHHHHHHHHcC
Confidence              124799999999874322222 222223332211 1235789999999975321011    1   1234566777776


Q ss_pred             -CeEEEEcCCC
Q 044972          159 -NRRVLFDNKT  168 (307)
Q Consensus       159 -~R~~~fnNk~  168 (307)
                       -.|+...-++
T Consensus       153 ~~~~~e~Sa~~  163 (184)
T 3ihw_A          153 RCTYYETCATY  163 (184)
T ss_dssp             TCEEEEEBTTT
T ss_pred             CCeEEEecCCC
Confidence             5666665544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.68  E-value=6.5e-08  Score=80.56  Aligned_cols=106  Identities=18%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.. ..+ .+. ........+ +|.  .+.++|||   |...    .        .   
T Consensus        12 ~vG~~~vGKTsli~~l~~~~-~~~-~~~-t~~-~~~~~~~~~-~~~~~~l~i~Dt~---G~~~----~--------~---   68 (178)
T 2iwr_A           12 VLGDARSGKSSLIHRFLTGS-YQV-LEK-TES-EQYKKEMLV-DGQTHLVLIREEA---GAPD----A--------K---   68 (178)
T ss_dssp             EECCGGGCHHHHHHHHHHSC-CCC-CSS-CSS-SEEEEEEEE-TTEEEEEEEEECS---SSCC----H--------H---
T ss_pred             EECCCCCCHHHHHHHHHhCC-CCC-cCC-Ccc-eeEEEEEEE-CCEEEEEEEEECC---CCch----h--------H---
Confidence            36999999999999999876 432 111 111 122334455 664  57889999   9643    0        1   


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccc-cCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKK-VFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~-~~~~~IVLfT~~D~L  131 (307)
                       ...+.|++|||+++.++-+-+... .+.++..+.... .-..+|||.|+.|..
T Consensus        69 -~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           69 -FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             -HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             -HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence             123579999999987433322222 222344443221 235789999999974

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.68  E-value=2.3e-08  Score=98.54  Aligned_cols=132  Identities=13%  Similarity=0.099  Sum_probs=79.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC-cccc-------------ccC---------------CCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKS-------------KVG---------------SSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s-------------~~s---------------~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+|||||+|.|++.. .|..             +..               ..+.|..+....... +++.+++||
T Consensus        13 iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~~~~iiD   91 (458)
T 1f60_A           13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQVTVID   91 (458)
T ss_dssp             EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEEEEEEE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCceEEEEE
Confidence            6999999999999999751 1210             000               124555554455566 889999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCH-------HHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSE-------EEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~-------ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |.-+           ..+.+.....++|++|||+++.....+       +....+..+. ..|   ..++||++|
T Consensus        92 tP---Gh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~---v~~iivviN  153 (458)
T 1f60_A           92 AP---GHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQLIVAVN  153 (458)
T ss_dssp             CC---CCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEEEEEEE
T ss_pred             CC---CcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcC---CCeEEEEEE
Confidence            99   9532           122233456789999999998632211       3333333222 222   357999999


Q ss_pred             cCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972          127 RGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      +.|....+...++...     ..++.+++..|
T Consensus       154 K~Dl~~~~~~~~~~i~-----~~~~~~l~~~g  180 (458)
T 1f60_A          154 KMDSVKWDESRFQEIV-----KETSNFIKKVG  180 (458)
T ss_dssp             CGGGGTTCHHHHHHHH-----HHHHHHHHHHT
T ss_pred             ccccccCCHHHHHHHH-----HHHHHHHHHcC
Confidence            9998742112233222     24667777665

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.66  E-value=2e-07  Score=90.04  Aligned_cols=113  Identities=12%  Similarity=0.116  Sum_probs=70.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-CCCCCCceeEEEEEEEeC----------------C------eEEEEEeCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-GSSEDTKTCEMQRTMLKD----------------G------QVVNVIDTPAIAR   59 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-s~~svT~~c~~~~~~~~~----------------G------r~v~VIDTP~~~G   59 (307)
                      +|.+|+||||++|.|+|........ ...+.|.........+..                |      +.+++||||   |
T Consensus        16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP---G   92 (410)
T 1kk1_A           16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP---G   92 (410)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECS---S
T ss_pred             ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECC---C
Confidence            6999999999999999864321111 112344433322222200                2      789999999   8


Q ss_pred             CCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           60 LFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        60 l~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .       ++....+    ......+|++|||+++...+ ..+....+..+.. +|   ..++||++|+.|....
T Consensus        93 h-------~~f~~~~----~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~---~~~iivviNK~Dl~~~  152 (410)
T 1kk1_A           93 H-------EALMTTM----LAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IG---QKNIIIAQNKIELVDK  152 (410)
T ss_dssp             H-------HHHHHHH----HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGSCH
T ss_pred             h-------HHHHHHH----HhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEECccCCCH
Confidence            4       2233332    23345789999999997555 5565655555443 33   3578999999998754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.65  E-value=7.7e-09  Score=88.68  Aligned_cols=113  Identities=13%  Similarity=-0.002  Sum_probs=66.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++........  ...|.........+ +|  ..+.++|||   |..+....           ..
T Consensus        38 vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~  100 (199)
T 3l0i_B           38 LIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTA---GQERFRTI-----------TS  100 (199)
T ss_dssp             EECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCT---TCTTCCCC-----------SC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECC---CcHhHHHH-----------HH
Confidence            36999999999999999876432211  12344455555666 77  478999999   85432211           11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|||+++.++-+-+  .+..++..+.... .-..+|||.|+.|....
T Consensus       101 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B          101 SYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTK  153 (199)
T ss_dssp             C--CCCSEEEECC-CCCSHHHH--HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred             HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence            2346789999999987432222  2223333332221 13578999999997644

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.65  E-value=5.8e-08  Score=100.48  Aligned_cols=111  Identities=19%  Similarity=0.145  Sum_probs=74.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC-cccc-----------ccC----CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKS-----------KVG----SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s-----------~~s----~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|.+|+||||+.|.|++.. .+..           ...    ..+.|..+......| ++..+++||||   |..|..  
T Consensus        16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP---G~~df~--   89 (693)
T 2xex_A           16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTP---GHVDFT--   89 (693)
T ss_dssp             ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCC---CCSSCC--
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECc---CCcchH--
Confidence            6999999999999999532 1110           000    123444455566778 89999999999   987632  


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                       .    ++.+++    ...|++|||+++....+.+....+..+..     .-...|||+|+.|....
T Consensus        90 -~----~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~-----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           90 -V----EVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATT-----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             -H----HHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCCEEEEEECTTSTTC
T ss_pred             -H----HHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHH-----cCCCEEEEEECCCcccc
Confidence             1    223333    24899999999876788887777766554     24578999999998754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.64  E-value=6.3e-08  Score=94.54  Aligned_cols=132  Identities=16%  Similarity=0.158  Sum_probs=76.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC-cccccc----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKV----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+||||++|.|++.. .|....                            ...+.|.........+ .++.+++||
T Consensus        12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~~~~~iiD   90 (435)
T 1jny_A           12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKYFFTIID   90 (435)
T ss_dssp             EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSCEEEECC
T ss_pred             EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CCeEEEEEE
Confidence            6999999999999999751 221000                            0123454444445567 889999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |..+.       ...    +.....+.|++|||+++...       +..+.+..+..+.. +|   ..++||+.|
T Consensus        91 tp---G~~~f-------~~~----~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~---~~~iivviN  152 (435)
T 1jny_A           91 AP---GHRDF-------VKN----MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MG---LDQLIVAVN  152 (435)
T ss_dssp             CS---SSTTH-------HHH----HHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TT---CTTCEEEEE
T ss_pred             CC---CcHHH-------HHH----HHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeEEEEEE
Confidence            99   97541       112    23456789999999998743       22233333333322 22   356899999


Q ss_pred             cCCCCCCC--cccHHHhcCCCCCchHHHHHHhcC
Q 044972          127 RGDELEDN--DETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       127 ~~D~L~~~--~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      +.|....+  ...++...     ..++.++..++
T Consensus       153 K~Dl~~~~~~~~~~~~~~-----~~i~~~~~~~~  181 (435)
T 1jny_A          153 KMDLTEPPYDEKRYKEIV-----DQVSKFMRSYG  181 (435)
T ss_dssp             CGGGSSSTTCHHHHHHHH-----HHHHHHHHHTT
T ss_pred             cccCCCccccHHHHHHHH-----HHHHHHHHHcC
Confidence            99987521  11222222     24677777766

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.62  E-value=4.9e-07  Score=87.31  Aligned_cols=113  Identities=12%  Similarity=0.135  Sum_probs=69.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-CCCCCCceeEEEEEEEe--------------C--C------eEEEEEeCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-GSSEDTKTCEMQRTMLK--------------D--G------QVVNVIDTPAIAR   59 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-s~~svT~~c~~~~~~~~--------------~--G------r~v~VIDTP~~~G   59 (307)
                      +|.+|+||||++|.|+|........ ...+.|.........+.              +  |      +.+++||||   |
T Consensus        14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP---G   90 (408)
T 1s0u_A           14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSP---G   90 (408)
T ss_dssp             ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECS---S
T ss_pred             EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECC---C
Confidence            6999999999999999864321111 11233443322221110              1  2      789999999   8


Q ss_pred             CCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           60 LFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        60 l~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .       ++..    +.+......+|++|||+++...+ ..+....+..+. .+|   ..++||++|+.|....
T Consensus        91 h-------~~f~----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~---~~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           91 H-------ETLM----ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE-ILG---IDKIIIVQNKIDLVDE  150 (408)
T ss_dssp             H-------HHHH----HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTT---CCCEEEEEECTTSSCT
T ss_pred             H-------HHHH----HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcC---CCeEEEEEEccCCCCH
Confidence            4       2222    22334456789999999997555 555555555443 333   3578999999998754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.61  E-value=2.4e-08  Score=92.54  Aligned_cols=61  Identities=16%  Similarity=0.039  Sum_probs=39.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV   70 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i   70 (307)
                      .+|.|||||||++|+|+|.+.+.++.. .++|+.++.  ..  -+..+.+||||   |+.++...+.+.
T Consensus       125 ~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~--~~--~~~~~~l~Dtp---G~~~~~~~~~~~  185 (282)
T 1puj_A          125 IIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQW--VK--VGKELELLDTP---GILWPKFEDELV  185 (282)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECC---CCCCSCCCCHHH
T ss_pred             EEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEE--EE--eCCCEEEEECc---CcCCCCCCCHHH
Confidence            369999999999999999987765432 346665542  22  35689999999   999887655543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.61  E-value=8.7e-09  Score=98.94  Aligned_cols=118  Identities=10%  Similarity=-0.003  Sum_probs=63.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccc----cccCCC-CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHH-HHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFK----SKVGSS-EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV-SKEIV   75 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~----s~~s~~-svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i-~~eI~   75 (307)
                      ++|.|||||||++|+|+|...+.    ...+.. ++|+....  ..+  +..+.|||||   |++++..-.+.+ .+++.
T Consensus       165 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtP---G~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTP---GIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             EEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECC---CBCCTTSGGGGSCHHHHH
T ss_pred             EecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCC---CcCcHHHHHHHhhHHHHH
Confidence            47999999999999999975332    111222 34433322  233  3349999999   999875322222 23344


Q ss_pred             HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           76 KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        76 kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .++.  ...++++++++..+..+.......+..+.   +  .-..+++++|+.|.+..
T Consensus       238 ~~~~--~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~--~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          238 LITP--TKEIKPMVFQLNEEQTLFFSGLARFDYVS---G--GRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHSC--SSCCCCEEEEECTTEEEEETTTEEEEEEE---S--SSEEEEEEECTTSCEEE
T ss_pred             Hhcc--ccccCceEEEEcCCCEEEEcceEEEEEec---C--CCceEEEEecCcccccc
Confidence            3332  34677777777663110000100011111   1  23468999999998865

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.61  E-value=7.1e-08  Score=84.23  Aligned_cols=144  Identities=10%  Similarity=-0.069  Sum_probs=80.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|.+||||||++|.+++.. |.....   .|.... .....+ ++  ..+.++|||   |......           ..
T Consensus        32 vvG~~~vGKSsL~~~l~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~~-----------~~   92 (214)
T 3q3j_B           32 LVGDVQCGKTAMLQVLAKDC-YPETYV---PTVFENYTACLET-EEQRVELSLWDTS---GSPYYDN-----------VR   92 (214)
T ss_dssp             EECSTTSSHHHHHHHHHHSC-CCSSCC---CCSEEEEEEEEEC---CEEEEEEEEEC---CSGGGTT-----------TG
T ss_pred             EECcCCCCHHHHHHHHhcCC-CCCCcC---CeeeeeEEEEEEE-CCEEEEEEEEECC---CCHhHHH-----------HH
Confidence            47999999999999999876 433221   122221 222334 44  478899999   8532110           11


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhc----CCCCCchHHH
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYL----GPECPKPLKE  152 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl----~~~~~~~Lk~  152 (307)
                      .....+.|++|||+++.++-+-++  ...+..+....   --..+|||.|+.|...+. .+.....    +.-.......
T Consensus        93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  168 (214)
T 3q3j_B           93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDL-STLMELSHQKQAPISYEQGCA  168 (214)
T ss_dssp             GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCH-HHHHHHHHTTCCCCCHHHHHH
T ss_pred             HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccch-hhhhhhcccccCccCHHHHHH
Confidence            234568999999999974332222  22334444432   235789999999976541 1111110    0001234566


Q ss_pred             HHHhcCC-eEEEEcCCC
Q 044972          153 ILQLCDN-RRVLFDNKT  168 (307)
Q Consensus       153 Li~~Cg~-R~~~fnNk~  168 (307)
                      +.+..+. .|+...-++
T Consensus       169 ~~~~~~~~~~~e~SA~~  185 (214)
T 3q3j_B          169 IAKQLGAEIYLEGSAFT  185 (214)
T ss_dssp             HHHHHTCSEEEECCTTT
T ss_pred             HHHHcCCCEEEEeccCC
Confidence            6666666 665555443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.61  E-value=1e-07  Score=82.01  Aligned_cols=142  Identities=15%  Similarity=0.011  Sum_probs=79.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |..+....           ...
T Consensus        15 ~G~~~~GKTsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~~   76 (212)
T 2j0v_A           15 VGDGAVGKTCMLICYTSNK-FPTDYI--PTVFDNFSANVAV-DGQIVNLGLWDTA---GQEDYSRL-----------RPL   76 (212)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCSSCC--CSSCCCEEEEEEC-SSCEEEEEEECCC---CCCCCCC-------------CG
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCccCC--CccceeEEEEEEE-CCEEEEEEEEECC---CcHHHHHH-----------HHh
Confidence            6999999999999999765 433221  1111112223345 664  88999999   87543210           123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcC-CCCCchHHHHHHhc
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLG-PECPKPLKEILQLC  157 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~-~~~~~~Lk~Li~~C  157 (307)
                      ...+.|++|||+++.++-+-+.  ...+..+....+   -..+|||.|+.|....  ..+...-. .-.......+....
T Consensus        77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~~~~~~  151 (212)
T 2j0v_A           77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEELRKQI  151 (212)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC--ccccccccCCCCHHHHHHHHHHc
Confidence            4568999999999863222111  123333433322   4578999999997654  21110000 00123345566666


Q ss_pred             CC-eEEEEcCC
Q 044972          158 DN-RRVLFDNK  167 (307)
Q Consensus       158 g~-R~~~fnNk  167 (307)
                      +. .|+...-+
T Consensus       152 ~~~~~~~~Sa~  162 (212)
T 2j0v_A          152 GAAAYIECSSK  162 (212)
T ss_dssp             TCSEEEECCTT
T ss_pred             CCceEEEccCC
Confidence            64 56554443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.59  E-value=1.5e-07  Score=95.88  Aligned_cols=111  Identities=12%  Similarity=0.111  Sum_probs=60.3

Q ss_pred             CeEEEEEeCCCCCCCCCC--CcCHHHHHHHHHHHHHh-cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEE
Q 044972           46 GQVVNVIDTPAIARLFDS--SADFEFVSKEIVKCIGM-AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMI  122 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt--~~~~~~i~~eI~kcv~l-s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~I  122 (307)
                      ...++++|.|   |+...  ..-+......+...+.. ...+..++|+|++.+..+...  .+++.+..+-  .....+|
T Consensus       146 ~p~LlLlDeP---Gi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~--~~l~la~~v~--~~g~rtI  218 (608)
T 3szr_A          146 VPDLTLIDLP---GITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT--EALSMAQEVD--PEGDRTI  218 (608)
T ss_dssp             SCCEEEEECC---C------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC--HHHHHHHHHC--SSCCSEE
T ss_pred             CCceeEeeCC---CccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH--HHHHHHHHHh--hcCCceE
Confidence            3569999999   88753  22222333444444433 234456777777765344322  2444444431  1246899


Q ss_pred             EEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCCCc
Q 044972          123 VVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKD  170 (307)
Q Consensus       123 VLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~~~  170 (307)
                      +|+|++|.+..  .+.+.++.     .+..-+-.+...|+++-|+...
T Consensus       219 ~VlTK~Dlv~~--g~~~~~~~-----~l~~~~~~l~~g~~~v~nr~~~  259 (608)
T 3szr_A          219 GILTKPDLVDK--GTEDKVVD-----VVRNLVFHLKKGYMIVKCRGQQ  259 (608)
T ss_dssp             EEEECGGGSSS--SSTTCCCC-----CC--CCSCCSSCEECCCCSCTT
T ss_pred             EEecchhhcCc--ccHHHHHH-----HHhCcccccCceEEEEecCchh
Confidence            99999999865  33332322     1233344567788888887643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.59  E-value=7.6e-09  Score=99.33  Aligned_cols=117  Identities=15%  Similarity=0.066  Sum_probs=67.2

Q ss_pred             CCCCCCCcHHHHHHHHHCC-----CccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGR-----RAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVK   76 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~-----~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~k   76 (307)
                      ++|.|||||||++|+|+|.     ....+.. ..++|+....  ..+  +..+.|||||   |+.+.......+..+...
T Consensus       167 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-~~gtT~~~~~--~~~--~~~~~liDtP---G~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          167 VVGCTNVGKSTFINRIIEEATGKGNVITTSY-FPGTTLDMIE--IPL--ESGATLYDTP---GIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-CTTSSCEEEE--EEC--STTCEEEECC---SCCCCSSGGGGSCTTTHH
T ss_pred             EEcCCCCchHHHHHHHHhhccCCccceeecC-CCCeEEeeEE--EEe--CCCeEEEeCC---CcCcHHHHHHHHhHHHHH
Confidence            4799999999999999997     2222221 2234544332  223  3458999999   998765322222222222


Q ss_pred             HHHhcCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           77 CIGMAKDGIHAVLIVFSVRNR-FSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        77 cv~ls~pGpha~LLVl~~~~R-fT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .+ .....+|+++++++.+.. |-. ....+..   +-+  .-..+++++|+.|.+..
T Consensus       239 ~~-~~~~~i~~~~~~l~~~~~~~~g-~l~~l~~---l~~--~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          239 II-TPKREIHPRVYQLNEGQTLFFG-GLARLDY---IKG--GRRSFVCYMANELTVHR  289 (369)
T ss_dssp             HH-SCSSCCCCEEEEECTTEEEEET-TTEEEEE---EES--SSEEEEEEECTTSCEEE
T ss_pred             HH-hcccccCceEEEEcCCceEEEC-CEEEEEE---ccC--CCceEEEEecCCccccc
Confidence            22 223578999999987411 100 1000111   111  12468899999998754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.01  E-value=5.6e-09  Score=89.73  Aligned_cols=111  Identities=18%  Similarity=0.035  Sum_probs=65.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....  +.+.........+ +|.  .+.++|||   |..+..           ....
T Consensus        35 v~G~~~~GKSsli~~l~~~~-~~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~-----------~~~~   96 (204)
T 3th5_A           35 VVGDGAVGKTCLLISYTTNA-FPGEYI--PTVFDNYSANVMV-DGKPVNLGLWDTA---GQEDYD-----------RLRP   96 (204)
Confidence            47999999999999999765 432211  1121222222334 554  45599999   864321           1111


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|||+++.++-+-++  ...+..+....+   ...+|||+|+.|....
T Consensus        97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  149 (204)
Confidence            23457899999999864332222  123333333222   4578999999997654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.59  E-value=2.8e-07  Score=78.39  Aligned_cols=136  Identities=15%  Similarity=0.024  Sum_probs=75.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|.+||||||++|.+++.. |.....   .|.... .....+ ++.  .+.++|||   |......    +    ..  
T Consensus        26 vvG~~~vGKTsLi~~l~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~~----~----~~--   87 (187)
T 3c5c_A           26 ILGRRGAGKSALTVKFLTKR-FISEYD---PNLEDTYSSEETV-DHQPVHLRVMDTA---DLDTPRN----C----ER--   87 (187)
T ss_dssp             EECCTTSSHHHHHHHHHHSS-CCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECC---C---CCC----T----HH--
T ss_pred             EECCCCCcHHHHHHHHHhCC-CCcccC---CCccceeeEEEEE-CCEEEEEEEEECC---CCCcchh----H----HH--
Confidence            37999999999999999876 543322   222221 223445 654  67789999   8654321    1    11  


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL  156 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~  156 (307)
                        ...+.|++|||+++.++-+-+. ...+..+...... .....+|||.|+.|.....  .    +   .......+.+.
T Consensus        88 --~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~----v---~~~~~~~~~~~  156 (187)
T 3c5c_A           88 --YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR--Q----V---TKAEGVALAGR  156 (187)
T ss_dssp             --HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC--S----S---CHHHHHHHHHH
T ss_pred             --HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcC--c----c---CHHHHHHHHHH
Confidence              1246899999999873222111 1122333332211 1245689999999975421  1    1   11234566666


Q ss_pred             cCCeEEEEcC
Q 044972          157 CDNRRVLFDN  166 (307)
Q Consensus       157 Cg~R~~~fnN  166 (307)
                      .+-.|+...-
T Consensus       157 ~~~~~~e~Sa  166 (187)
T 3c5c_A          157 FGCLFFEVSA  166 (187)
T ss_dssp             HTCEEEECCS
T ss_pred             cCCcEEEEee
Confidence            6666665554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.57  E-value=1.6e-06  Score=74.53  Aligned_cols=140  Identities=17%  Similarity=0.069  Sum_probs=78.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|.+||||||++|.++|... |.. .+  ..|.........+ +|.  .+.++|||   |..+..   ..+    ..  
T Consensus        28 vvG~~~vGKSsLi~~l~~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~l~i~Dt~---g~~~~~---~~~----~~--   91 (195)
T 3cbq_A           28 LVGESGVGKSTLAGTFGGLQGDSAH-EP--ENPEDTYERRIMV-DKEEVTLVVYDIW---EQGDAG---GWL----RD--   91 (195)
T ss_dssp             EECSTTSSHHHHHHHTCCEECCGGG-TT--TSCTTEEEEEEEE-TTEEEEEEEECCC---CCSGGG---HHH----HH--
T ss_pred             EECCCCCCHHHHHHHHHhccCCccC-CC--CcccceEEEEEEE-CCEEEEEEEEecC---CCccch---hhh----HH--
Confidence            379999999999999987542 322 11  2233333444567 776  45667999   874321   111    11  


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                       ....+.|++|||+++.++-+-+. ...+..+....+ .....+|||.|+.|.......+.         ...+.+.+..
T Consensus        92 -~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~---------~~~~~~a~~~  160 (195)
T 3cbq_A           92 -HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSL---------EEGRHLAGTL  160 (195)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCH---------HHHHHHHHHT
T ss_pred             -HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCH---------HHHHHHHHHh
Confidence             11236799999999873222111 112222322221 12457899999999764311121         2344566666


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +-.|+...-++
T Consensus       161 ~~~~~e~Sa~~  171 (195)
T 3cbq_A          161 SCKHIETSAAL  171 (195)
T ss_dssp             TCEEEEEBTTT
T ss_pred             CCEEEEEcCCC
Confidence            66676666554

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.55  E-value=4.6e-08  Score=85.15  Aligned_cols=143  Identities=12%  Similarity=-0.021  Sum_probs=79.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .+|.+||||||++|.+++.. |....   ..|.... .....+ ++  ..+.++|||   |..+...           ..
T Consensus        33 vvG~~~vGKSsLi~~l~~~~-~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~---G~~~~~~-----------~~   93 (205)
T 1gwn_A           33 VVGDSQCGKTALLHVFAKDC-FPENY---VPTVFENYTASFEI-DTQRIELSLWDTS---GSPYYDN-----------VR   93 (205)
T ss_dssp             EEESTTSSHHHHHHHHHHSC-CCSSC---CCCSEEEEEEEEES-SSSEEEEEEEEEC---CSGGGTT-----------TG
T ss_pred             EECCCCCCHHHHHHHHhcCC-CCCCc---CCccceeEEEEEEE-CCEEEEEEEEeCC---CcHhhhH-----------HH
Confidence            36999999999999999865 43221   1222221 122334 44  478999999   8632110           01


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCC---C-CCchHHH
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGP---E-CPKPLKE  152 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~---~-~~~~Lk~  152 (307)
                      .....+.|++|||+++.++-+-++  ...+..+....   .-..+|||.|+.|..... ..+.++...   . .....+.
T Consensus        94 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  169 (205)
T 1gwn_A           94 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGAN  169 (205)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHH
T ss_pred             HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccch-hhhhhhcccccCCCCHHHHHH
Confidence            234578999999999873322222  12233343332   135789999999976541 223322211   0 1123556


Q ss_pred             HHHhcC-CeEEEEcCC
Q 044972          153 ILQLCD-NRRVLFDNK  167 (307)
Q Consensus       153 Li~~Cg-~R~~~fnNk  167 (307)
                      +.+..+ ..|+...-+
T Consensus       170 ~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          170 MAKQIGAATYIECSAL  185 (205)
T ss_dssp             HHHHHTCSEEEECCTT
T ss_pred             HHHHcCCCEEEEeeec
Confidence            666666 355544443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.52  E-value=1.4e-07  Score=79.96  Aligned_cols=112  Identities=15%  Similarity=-0.026  Sum_probs=57.1

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEE------eCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTML------KDGQVVNVIDTPAIARLFDSSADFEFVSKEIV   75 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~------~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~   75 (307)
                      +|++||||||++|.++|.. .|....   ..|.........+      .....+.++|||   |.....        .+.
T Consensus         8 vG~~gvGKStLl~~l~~~~~~~~~~~---~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~---G~~~~~--------~~~   73 (184)
T 2zej_A            8 VGNTGSGKTTLLQQLMKTKKSDLGMQ---SATVGIDVKDWPIQIRDKRKRDLVLNVWDFA---GREEFY--------STH   73 (184)
T ss_dssp             ESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEEC---SHHHHH--------TTS
T ss_pred             ECCCCCCHHHHHHHHhcCCCccCCCc---ceeccEEeEEeeeccccCCCCceEEEEEecC---CCHHHH--------Hhh
Confidence            6999999999999999963 454321   1222222211111      024588999999   853110        010


Q ss_pred             HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           76 KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        76 kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .   ....+.|++++|+++.++++.- ...-.++..+.-...-..+|||.|+.|..+
T Consensus        74 ~---~~~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  126 (184)
T 2zej_A           74 P---HFMTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSD  126 (184)
T ss_dssp             H---HHHHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred             H---HHccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence            1   1123578999999886332211 112233333221111346788889999654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.50  E-value=1.8e-07  Score=85.60  Aligned_cols=143  Identities=17%  Similarity=0.041  Sum_probs=81.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEE--EEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVN--VIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~--VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |....  .+.|.........+ +|..+.  ++|||   |..+..           .....
T Consensus       161 ~G~~~~GKssli~~~~~~~-~~~~~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~---G~~~~~-----------~~~~~  222 (332)
T 2wkq_A          161 VGDGAVGKTCLLISYTTNA-FPGEY--IPTVFDNYSANVMV-DGKPVNLGLWDTA---GLEDYD-----------RLRPL  222 (332)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCCSC--CCCSEEEEEEEEEE-TTEEEEEEEEEEC---CCGGGT-----------TTGGG
T ss_pred             ECCCCCChHHHHHHHHhCC-CCccc--CCcccceeEEEEEE-CCEEEEEEEEeCC---Cchhhh-----------HHHHH
Confidence            6999999999999999765 43222  12222222333455 777655  99999   864321           11123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhc----CCCCCchHHHHH
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYL----GPECPKPLKEIL  154 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl----~~~~~~~Lk~Li  154 (307)
                      ...+.|++|||+++.++.+-++.  ..+..+....+   ...+|||.|+.|..... ...+.+.    ..-.....+.+.
T Consensus       223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~  298 (332)
T 2wkq_A          223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLAMA  298 (332)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHHHHHHH
Confidence            45689999999998743332222  23344444332   46799999999976541 1222211    110123345566


Q ss_pred             HhcCC-eEEEEcCC
Q 044972          155 QLCDN-RRVLFDNK  167 (307)
Q Consensus       155 ~~Cg~-R~~~fnNk  167 (307)
                      +..+. .|+....+
T Consensus       299 ~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          299 KEIGAVKYLECSAL  312 (332)
T ss_dssp             HHTTCSEEEECCTT
T ss_pred             HHcCCcEEEEecCC
Confidence            66554 55554443

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.50  E-value=4.4e-07  Score=91.21  Aligned_cols=111  Identities=13%  Similarity=0.043  Sum_probs=69.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc--------------------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV--------------------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~--------------------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|.+|+||||+.|.|++........                    ...+.|.........+ ++..+++||||   |..|
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP---G~~d   94 (529)
T 2h5e_A           19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP---GHED   94 (529)
T ss_dssp             EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC---CSTT
T ss_pred             ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC---CChh
Confidence            6999999999999999642211000                    0112232233345567 89999999999   9866


Q ss_pred             CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      -.       .++.+    +....|++|||+++...........+..+..     .-..+||++|+.|....
T Consensus        95 f~-------~~~~~----~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           95 FS-------EDTYR----TLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CC-------HHHHH----GGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCS
T ss_pred             HH-------HHHHH----HHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCccc
Confidence            32       12222    3357899999999876666665555444332     12358999999997654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.49  E-value=2.2e-07  Score=96.14  Aligned_cols=111  Identities=18%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccc------ccc---------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRR-AFK------SKV---------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~------s~~---------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|.+|+||||+.|.|+... .+.      .+.         .....|.........+ .+..+++||||   |..|-   
T Consensus        18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTP---G~~df---   90 (691)
T 1dar_A           18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTP---GHVDF---   90 (691)
T ss_dssp             EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCC---SSTTC---
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECc---Cccch---
Confidence            6999999999999999321 110      000         0113444445556678 89999999999   98652   


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                          ..+..+++.    ..|++|+|+++....+.+....+..+..     .-...+|++|+.|....
T Consensus        91 ----~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           91 ----TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEK-----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             ----HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHH-----TTCCEEEEEECTTSTTC
T ss_pred             ----HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHH-----cCCCEEEEEECCCcccC
Confidence                123333332    4789999999876778777766665554     24568899999998754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.48  E-value=1.3e-07  Score=90.76  Aligned_cols=98  Identities=13%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+|+||||++|.|+     .     .+.|.........+ +++.+++||||   |..|-       ...+...    .
T Consensus        27 iG~~d~GKSTL~~~L~-----~-----~giTi~~~~~~~~~-~~~~i~iiDtP---Gh~~f-------~~~~~~~----~   81 (370)
T 2elf_A           27 IGTEKSGRTSLAANLG-----K-----KGTSSDITMYNNDK-EGRNMVFVDAH---SYPKT-------LKSLITA----L   81 (370)
T ss_dssp             EESTTSSHHHHHHTTS-----E-----EEEESSSEEEEECS-SSSEEEEEECT---TTTTC-------HHHHHHH----H
T ss_pred             ECCCCCCHHHHHHHHH-----h-----CCEEEEeeEEEEec-CCeEEEEEECC---ChHHH-------HHHHHHH----H
Confidence            6999999999999998     1     12343444455667 88899999999   97652       1222222    2


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe-cCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT-RGDE  130 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT-~~D~  130 (307)
                      .++|++|||++ ......+.+..+..+.. +|   ..+.||++| +.|.
T Consensus        82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~---i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           82 NISDIAVLCIP-PQGLDAHTGECIIALDL-LG---FKHGIIALTRSDST  125 (370)
T ss_dssp             HTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TT---CCEEEEEECCGGGS
T ss_pred             HHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cC---CCeEEEEEEeccCC
Confidence            56899999999 64555555555554443 33   345688999 8887

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.46  E-value=1.6e-06  Score=76.59  Aligned_cols=113  Identities=19%  Similarity=0.054  Sum_probs=65.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.++|.. .|.+...  +++.........+ +|..  +.++|||   |...      . ..-+   ..
T Consensus        43 vG~~~vGKSSLl~r~~~~~~~~~~~~~--~~g~d~~~~~i~~-~~~~~~l~~~Dt~---g~~~------~-~~~l---~~  106 (211)
T 2g3y_A           43 IGEQGVGKSTLANIFAGVHDSMDSDCE--VLGEDTYERTLMV-DGESATIILLDMW---ENKG------E-NEWL---HD  106 (211)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCT---TTTH------H-HHHH---HH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCcCC--ccceeeEEEEEEE-CCeeeEEEEeecC---CCcc------h-hhhH---HH
Confidence            6999999999999999854 4544322  2223333444567 8865  5678999   7431      1 1111   12


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ....+.+++|+|+.+.++-+-+.. ..+..+..... ..-..+|||.|+.|..+
T Consensus       107 ~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~  159 (211)
T 2g3y_A          107 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR  159 (211)
T ss_dssp             CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence            345678999999998733221111 11222222211 12357899999998653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.45  E-value=2.7e-08  Score=100.38  Aligned_cols=109  Identities=14%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+|+||||++|.|++.+....  ...+.|.........+++|..+++||||   |..+....           .....
T Consensus        10 vG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTP---Ghe~f~~~-----------~~~~~   73 (537)
T 3izy_P           10 MGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTP---GHAAFSAM-----------RARGT   73 (537)
T ss_dssp             EESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECS---SSCCTTTS-----------BBSSS
T ss_pred             ECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECC---ChHHHHHH-----------HHHHH
Confidence            69999999999999998764333  2334555554444444467899999999   85432110           11244


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .+.|++|||+++......+....+..+...     -..+||+.|+.|...
T Consensus        74 ~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~  118 (537)
T 3izy_P           74 QVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAE  118 (537)
T ss_dssp             BSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTT
T ss_pred             ccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEecccccc
Confidence            678999999999877788777777666542     236899999999754

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.43  E-value=4.4e-07  Score=89.69  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=62.3

Q ss_pred             CCCCCCCcHHHHHHHHHCC-----------------CccccccCCCCCCceeEEEEEEEe--------CC--eEEEEEeC
Q 044972            2 CACEYIKICTTTGNSILGR-----------------RAFKSKVGSSEDTKTCEMQRTMLK--------DG--QVVNVIDT   54 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~-----------------~~F~s~~s~~svT~~c~~~~~~~~--------~G--r~v~VIDT   54 (307)
                      -+|++++|||+++|.|+|.                 ..|..+    +.|..|..+...|.        +|  ..|+|+||
T Consensus        72 V~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~----~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT  147 (447)
T 3q5d_A           72 VAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR----GGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT  147 (447)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC----CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred             EECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC----CCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence            3799999999999999974                 234433    35667777777771        22  57999999


Q ss_pred             CCCCCCCCCCcCHHHHHHHHH-HHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972           55 PAIARLFDSSADFEFVSKEIV-KCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES  111 (307)
Q Consensus        55 P~~~Gl~Dt~~~~~~i~~eI~-kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~  111 (307)
                      |   |++|+..+.+ -...|- -++.++    .++|+-+ .+ .+.+.+...|..+.+
T Consensus       148 e---G~~~~~~~~~-~d~~ifal~~lLS----s~~IyN~-~~-~i~~~~l~~L~~~~e  195 (447)
T 3q5d_A          148 Q---GTFDSQSTLR-DSATVFALSTMIS----SIQVYNL-SQ-NVQEDDLQHLQLFTE  195 (447)
T ss_dssp             E---CCCSSHHHHH-HHHHHHHHHHHHC----SEEEEEE-SS-SCCHHHHHHHHHHHH
T ss_pred             C---cccccccchh-hhHHHHHHHHHHh----hHHHHhh-cc-cccHHHHHHHHHHHH
Confidence            9   9998754221 111222 122232    3555555 34 899998887777555

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.42  E-value=4.8e-07  Score=77.59  Aligned_cols=112  Identities=19%  Similarity=0.057  Sum_probs=60.1

Q ss_pred             CCCCCCcHHHHHHHHHCC-CccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGR-RAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~-~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.|||||||++|.++|. ..|.+...  +.+.+.......+ +|..  +.++||+   |.......       +.   .
T Consensus        12 vG~~~vGKSsL~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~Dt~---~~~~~~~~-------~~---~   75 (192)
T 2cjw_A           12 IGEQGVGKSTLANIFAGVHDSMDSDXE--VLGEDTYERTLMV-DGESATIILLDMW---ENKGENEW-------LH---D   75 (192)
T ss_dssp             ECSTTSSHHHHHHHHHHHSCCC----G--GGCTTEEEEEEEE-TTEEEEEEEECCC---CC----CT-------TG---G
T ss_pred             ECCCCCCHHHHHHHHhcCcCCcCcccc--ccceeEEEEEEEE-CCeEEEEEEEEec---cCcchhhh-------HH---H
Confidence            799999999999999984 44554322  2223333344567 8874  4678999   75321000       11   0


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ....+.|++|+|+++.++-+-+.. ..+..+...... .-..+|||.++.|..
T Consensus        76 ~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~  127 (192)
T 2cjw_A           76 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLV  127 (192)
T ss_dssp             GHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCG
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhh
Confidence            112346899999998743221211 122233332211 124577778888754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.41  E-value=2.4e-08  Score=101.64  Aligned_cols=111  Identities=12%  Similarity=0.045  Sum_probs=53.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-----------------------------CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-----------------------------GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-----------------------------s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+|||||+|.||+........                             ...++|.........+ +++.++|||
T Consensus       183 iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~~~i~iiD  261 (592)
T 3mca_A          183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DKKIYEIGD  261 (592)
T ss_dssp             ECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------------CCE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CCeEEEEEE
Confidence            6999999999999998642111100                             0123455555555666 789999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-----C--CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-----F--SEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-----f--T~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |..+....           +.....++|++|||+++...     |  ..+....+..+.. +|   ..++|||+|
T Consensus       262 TP---Gh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lg---ip~iIvviN  323 (592)
T 3mca_A          262 AP---GHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LG---ISEIVVSVN  323 (592)
T ss_dssp             EE---SSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SS---CCCEEEEEE
T ss_pred             CC---ChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeEEEEEe
Confidence            99   87542110           11233568999999988632     3  5555555554443 22   346899999


Q ss_pred             cCCCCC
Q 044972          127 RGDELE  132 (307)
Q Consensus       127 ~~D~L~  132 (307)
                      +.|...
T Consensus       324 KiDl~~  329 (592)
T 3mca_A          324 KLDLMS  329 (592)
T ss_dssp             CGGGGT
T ss_pred             cccccc
Confidence            999765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.41  E-value=9e-07  Score=82.42  Aligned_cols=148  Identities=16%  Similarity=0.121  Sum_probs=67.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCC---C--CCCceeEEEEEEEe-CC--eEEEEEeCCCCCCCCCCCcCH---HHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGS---S--EDTKTCEMQRTMLK-DG--QVVNVIDTPAIARLFDSSADF---EFV   70 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~---~--svT~~c~~~~~~~~-~G--r~v~VIDTP~~~Gl~Dt~~~~---~~i   70 (307)
                      .+|++||||||++|+|+|...|....-.   .  ..|.........+. +|  ..++|+|||   |+.+.....   ..+
T Consensus        23 lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~---g~~~~~~~~e~~~~l   99 (301)
T 2qnr_A           23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTP---GYGDAINCRDCFKTI   99 (301)
T ss_dssp             EEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--------------CTTH
T ss_pred             EECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhh---hhhhhcCcHHHHHHH
Confidence            4799999999999999998666432100   0  01211111111110 22  478999999   885421100   111


Q ss_pred             HHHH----HHHHHhcC---------CCCeEEEEEEeC-CCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcc
Q 044972           71 SKEI----VKCIGMAK---------DGIHAVLIVFSV-RNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDE  136 (307)
Q Consensus        71 ~~eI----~kcv~ls~---------pGpha~LLVl~~-~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~  136 (307)
                      ...|    ...+...+         +.+|++||++.. +..|...+...++.+.    .  ...++||++..|.+..  .
T Consensus       100 ~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~--~~~iilV~~K~Dl~~~--~  171 (301)
T 2qnr_A          100 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----N--KVNIVPVIAKADTLTL--K  171 (301)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----T--TSCEEEEECCGGGSCH--H
T ss_pred             HHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----h--cCCEEEEEEeCCCCCH--H
Confidence            1111    12222222         234777777653 3248887754433331    1  2468999999997754  2


Q ss_pred             cHHHhcCCCCCchHHHHHHhcCCeEEEEc
Q 044972          137 TLEDYLGPECPKPLKEILQLCDNRRVLFD  165 (307)
Q Consensus       137 sie~yl~~~~~~~Lk~Li~~Cg~R~~~fn  165 (307)
                      .+..+.     ...+++++..+-.|+-+.
T Consensus       172 e~~~~~-----~~~~~~~~~~~~~~~e~S  195 (301)
T 2qnr_A          172 ERERLK-----KRILDEIEEHNIKIYHLP  195 (301)
T ss_dssp             HHHHHH-----HHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHH-----HHHHHHHHHcCCeEEecC
Confidence            232221     134555666665554443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.39  E-value=6.9e-07  Score=89.45  Aligned_cols=115  Identities=13%  Similarity=0.038  Sum_probs=68.1

Q ss_pred             CCCCCCcHHHHHHHHH------CCCccccccCCCCCCc-----------eeEEEE-----------------EEEeCCeE
Q 044972            3 ACEYIKICTTTGNSIL------GRRAFKSKVGSSEDTK-----------TCEMQR-----------------TMLKDGQV   48 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL------G~~~F~s~~s~~svT~-----------~c~~~~-----------------~~~~~Gr~   48 (307)
                      +|.||||||||.|.|+      |.++..+.........           ......                 ..+ ++..
T Consensus       107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~-~~~D  185 (504)
T 2j37_W          107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN-ENFE  185 (504)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH-TTCC
T ss_pred             ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH-CCCc
Confidence            6999999999999999      8876433321110000           000000                 012 6779


Q ss_pred             EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 044972           49 VNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRG  128 (307)
Q Consensus        49 v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~  128 (307)
                      ++|||||   |.....   ..+..++......  -.||.+|||+++....+  ....+.    .|.+. ....+||+|+.
T Consensus       186 vvIIDTp---G~~~~~---~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~----~~~~~-~~i~gvVlNK~  250 (504)
T 2j37_W          186 IIIVDTS---GRHKQE---DSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAK----AFKDK-VDVASVIVTKL  250 (504)
T ss_dssp             EEEEEEC---CCCTTC---HHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHH----HHHHH-HCCCCEEEECT
T ss_pred             EEEEeCC---CCcccc---hhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHH----HHHhh-cCceEEEEeCC
Confidence            9999999   987532   3444555443322  26899999999863322  222222    34332 33368999999


Q ss_pred             CCCCC
Q 044972          129 DELED  133 (307)
Q Consensus       129 D~L~~  133 (307)
                      |....
T Consensus       251 D~~~~  255 (504)
T 2j37_W          251 DGHAK  255 (504)
T ss_dssp             TSCCC
T ss_pred             ccccc
Confidence            97643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.39  E-value=1e-07  Score=91.82  Aligned_cols=83  Identities=8%  Similarity=-0.116  Sum_probs=50.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-----------------QVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-----------------r~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|.|||||||++|.|+|.....+..  ..+|.....+...+ ++                 ..+.|+|||   |+.....
T Consensus         8 VG~pnvGKSTL~n~Lt~~~~~v~~~--p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtp---Gl~~~a~   81 (363)
T 1jal_A            8 VGLPNVGKSTLFNALTKAGIEAANY--PFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIA---GLVAGAS   81 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECC---SCCTTHH
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCC--CCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECC---CCccccc
Confidence            7999999999999999987333222  12344444445555 44                 479999999   9875321


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      .    .+.+...+.....+.|++|+|+++.
T Consensus        82 ~----~~gl~~~fl~~ir~ad~il~VvD~~  107 (363)
T 1jal_A           82 K----GEGLGNKFLANIRETDAIGHVVRCF  107 (363)
T ss_dssp             H----HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             c----cchHHHHHHHHHHhcCeEEEEEecC
Confidence            0    1111111111235789999999885

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.39  E-value=2.3e-06  Score=73.24  Aligned_cols=111  Identities=13%  Similarity=0.054  Sum_probs=64.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|++||||||++|.|+|.. |.... ...++.........+ +|.  .+.++|||   |......        +.   .
T Consensus        10 lvG~~g~GKSTLl~~l~~~~-~~~~~-~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~---g~~~~~~--------~~---~   72 (199)
T 2f9l_A           10 LIGDSGVGKSNLLSRFTRNE-FNLES-KSTIGVEFATRSIQV-DGKTIKAQIWDTA---GQERYRR--------IT---S   72 (199)
T ss_dssp             EESSTTSSHHHHHHHHHHSC-CCC----CCCSCEEEEEEEEE-TTEEEEEEEEECS---SGGGTTC--------CC---H
T ss_pred             EECcCCCCHHHHHHHHhcCC-CCCCC-CCccceeEEEEEEEE-CCEEEEEEEEECC---Cchhhhh--------hh---H
Confidence            36999999999999999975 32211 112233444555667 886  45679999   8542211        00   1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ....+++++|+|+++....+-++. ..+..+....  .....+++|.++.|..
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~  123 (199)
T 2f9l_A           73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLR  123 (199)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCG
T ss_pred             HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccc
Confidence            122468999999998633322221 1122222211  1245788999998864

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.35  E-value=5.5e-07  Score=88.84  Aligned_cols=111  Identities=14%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccc------------------------ccc----CCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRR-AFK------------------------SKV----GSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~------------------------s~~----s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|.+|+||||++|.|++.. .|.                        ...    ...+.|.........+ +++.+++||
T Consensus        49 iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~~~~iiD  127 (467)
T 1r5b_A           49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHRRFSLLD  127 (467)
T ss_dssp             EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSEEEEECC
T ss_pred             EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCeEEEEEE
Confidence            6999999999999998522 121                        000    0123444444445567 899999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-------CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-------SEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-------T~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |..+-       ...    +.....++|++|||+++....       ..+.+..+..+. ..|   ..++||+.|
T Consensus       128 tP---Gh~~f-------~~~----~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~---vp~iivviN  189 (467)
T 1r5b_A          128 AP---GHKGY-------VTN----MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG---INHLVVVIN  189 (467)
T ss_dssp             CC---C----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT---CSSEEEEEE
T ss_pred             CC---CcHHH-------HHH----HHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcC---CCEEEEEEE
Confidence            99   86431       111    223456899999999986432       123333333332 222   346899999


Q ss_pred             cCCCCC
Q 044972          127 RGDELE  132 (307)
Q Consensus       127 ~~D~L~  132 (307)
                      +.|...
T Consensus       190 K~Dl~~  195 (467)
T 1r5b_A          190 KMDEPS  195 (467)
T ss_dssp             CTTSTT
T ss_pred             CccCCC
Confidence            999754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.35  E-value=1.3e-07  Score=94.59  Aligned_cols=108  Identities=12%  Similarity=0.056  Sum_probs=71.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+|+||||++|.|++.......  ..+.|.+.......+ +|..++++|||   |..+....           .....
T Consensus        10 vGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~-~~~~i~~iDTP---Ghe~f~~~-----------~~~~~   72 (501)
T 1zo1_I           10 MGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVET-ENGMITFLDTP---GHAAFTSM-----------RARGA   72 (501)
T ss_dssp             EESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCT-TSSCCCEECCC---TTTCCTTS-----------BCSSS
T ss_pred             ECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEE-CCEEEEEEECC---CcHHHHHH-----------HHHHH
Confidence            699999999999999986533221  223454443344556 88999999999   86543211           11234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...|++|||+++......+....+..+..     .-..+||+.|+.|...
T Consensus        73 ~~aD~aILVVda~~g~~~qT~e~l~~~~~-----~~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           73 QATDIVVLVVAADDGVMPQTIEAIQHAKA-----AQVPVVVAVNKIDKPE  117 (501)
T ss_dssp             BSCSSEEEEEETTTBSCTTTHHHHHHHHH-----TTCCEEEEEECSSSST
T ss_pred             hhCCEEEEEeecccCccHHHHHHHHHHHh-----cCceEEEEEEeccccc
Confidence            57899999999875555555555554443     2235899999999754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.32  E-value=3.4e-07  Score=87.10  Aligned_cols=62  Identities=18%  Similarity=0.112  Sum_probs=34.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      +|..++|||||   |+.++.   ..+           ...+|++|+|+++....   +...+..  .++.    ...++|
T Consensus       165 ~~~~~iliDT~---Gi~~~~---~~l-----------~~~~d~vl~V~d~~~~~---~~~~i~~--~il~----~~~ivV  218 (349)
T 2www_A          165 AGYDIILIETV---GVGQSE---FAV-----------ADMVDMFVLLLPPAGGD---ELQGIKR--GIIE----MADLVA  218 (349)
T ss_dssp             TTCSEEEEECC---CC--CH---HHH-----------HTTCSEEEEEECCC-----------------CC----SCSEEE
T ss_pred             CCCCEEEEECC---Ccchhh---hhH-----------HhhCCEEEEEEcCCcch---hHHHhHH--HHHh----cCCEEE
Confidence            67899999999   987532   111           24689999999875211   1111111  2221    246888


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      +|+.|...
T Consensus       219 lNK~Dl~~  226 (349)
T 2www_A          219 VTKSDGDL  226 (349)
T ss_dssp             ECCCSGGG
T ss_pred             EeeecCCC
Confidence            99999764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.32  E-value=1.3e-06  Score=95.05  Aligned_cols=131  Identities=16%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC------cccc----c----cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH
Q 044972            3 ACEYIKICTTTGNSILGRR------AFKS----K----VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE   68 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~------~F~s----~----~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~   68 (307)
                      +|.+|+||||++|.|++..      .|..    .    ....++|.......... +++.+++||||   |..+      
T Consensus       302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTP---GHed------  371 (1289)
T 3avx_A          302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCP---GHAD------  371 (1289)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECC---CHHH------
T ss_pred             EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECC---ChHH------
Confidence            6999999999999999741      1110    0    00122333322223344 67899999999   8532      


Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCc
Q 044972           69 FVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPK  148 (307)
Q Consensus        69 ~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~  148 (307)
                       ...    -+.....++|++|||+++......+.+..+..+.. .   -..++||+.|+.|....  ...-+.+.    .
T Consensus       372 -F~~----~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-l---gIP~IIVVINKiDLv~d--~e~le~i~----e  436 (1289)
T 3avx_A          372 -YVK----NMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-V---GVPYIIVFLNKCDMVDD--EELLELVE----M  436 (1289)
T ss_dssp             -HHH----HHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-H---TCSCEEEEEECCTTCCC--HHHHHHHH----H
T ss_pred             -HHH----HHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-c---CCCeEEEEEeecccccc--hhhHHHHH----H
Confidence             222    23345678999999999975566666665554443 2   24568899999998753  22212221    2


Q ss_pred             hHHHHHHhcC
Q 044972          149 PLKEILQLCD  158 (307)
Q Consensus       149 ~Lk~Li~~Cg  158 (307)
                      .++++++..|
T Consensus       437 Ei~elLk~~G  446 (1289)
T 3avx_A          437 EVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcc
Confidence            4667777665

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.31  E-value=4.1e-07  Score=88.38  Aligned_cols=85  Identities=11%  Similarity=-0.073  Sum_probs=55.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-----------------QVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-----------------r~v~VIDTP~~~Gl~Dt~   64 (307)
                      .+|+||||||||+|.|+|..+..+.. ...+|.....+...+ .|                 ..+.++|||   |+....
T Consensus        25 iVG~pnaGKSTL~n~Ltg~~~a~~~~-~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~p---Gl~~~~   99 (392)
T 1ni3_A           25 IVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIA---GLTKGA   99 (392)
T ss_dssp             EEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTG---GGCCCC
T ss_pred             EECCCCCCHHHHHHHHHCCCcccccC-CCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecc---ccccCC
Confidence            37999999999999999987533322 223455666677777 55                 468999999   987543


Q ss_pred             cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      ...+.+...+..    ...+.|++++|+++.
T Consensus       100 s~~e~L~~~fl~----~ir~~d~il~Vvd~~  126 (392)
T 1ni3_A          100 STGVGLGNAFLS----HVRAVDAIYQVVRAF  126 (392)
T ss_dssp             CSSSSSCHHHHH----HHTTCSEEEEEEECC
T ss_pred             cHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence            222212112211    224689999999874

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.31  E-value=6.6e-07  Score=89.27  Aligned_cols=134  Identities=16%  Similarity=0.099  Sum_probs=73.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEE--------EEe---CCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRT--------MLK---DGQVVNVIDTPAIARLFDSSADFEFVS   71 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~--------~~~---~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~   71 (307)
                      +|.+||||||++|.++|.+ |.....   .|......+.        .+.   .+..+.|+|||   |..........  
T Consensus        47 vG~~~vGKSSLl~~l~~~~-~~~~~~---~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~---G~e~~~~~~~~--  117 (535)
T 3dpu_A           47 IGDGMAGKTSLLKQLIGET-FDPKES---QTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFG---GQEIMHASHQF--  117 (535)
T ss_dssp             ESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCC---SCCTTTTTCHH--
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCCCCC---CccceEEEEeccccccceeecCCCceEEEEEEECC---cHHHHHHHHHH--
Confidence            7999999999999999976 332211   1211111111        110   25799999999   84332211111  


Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHH
Q 044972           72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLK  151 (307)
Q Consensus        72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk  151 (307)
                               ...+++++|+|+++. .+ +.....+..+....+   -..+|||.|+.|.......+.         ..++
T Consensus       118 ---------~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~---------~~~~  174 (535)
T 3dpu_A          118 ---------FMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQ---------KKIN  174 (535)
T ss_dssp             ---------HHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCH---------HHHH
T ss_pred             ---------HccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCH---------HHHH
Confidence                     112589999999986 44 333445555555432   367999999999765421111         2344


Q ss_pred             HHHHhcCCeEEEEcCCC
Q 044972          152 EILQLCDNRRVLFDNKT  168 (307)
Q Consensus       152 ~Li~~Cg~R~~~fnNk~  168 (307)
                      .+....+..|+..+-++
T Consensus       175 ~~~~~~~~~~~~vSA~~  191 (535)
T 3dpu_A          175 ERFPAIENRFHRISCKN  191 (535)
T ss_dssp             HHCGGGTTCEEECCC--
T ss_pred             HHHHhcCCceEEEecCc
Confidence            55555565665555443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.31  E-value=4.6e-06  Score=86.46  Aligned_cols=111  Identities=17%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccccc----cC-----------CCCCCceeEEEEEEEeCC-------eEEEEEeCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSK----VG-----------SSEDTKTCEMQRTMLKDG-------QVVNVIDTPAIAR   59 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~----~s-----------~~svT~~c~~~~~~~~~G-------r~v~VIDTP~~~G   59 (307)
                      +|.+|+||||+.|.|+... .|...    ..           ..+.|.........| ++       ..++|||||   |
T Consensus        16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~liDTP---G   91 (704)
T 2rdo_7           16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINIIDTP---G   91 (704)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEEeCC---C
Confidence            6999999999999998642 12110    00           112343333345566 66       899999999   9


Q ss_pred             CCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           60 LFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        60 l~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..|-       ..++.+++    ...|++|+|+++....+.+....+..+..     .-...+|++|+.|....
T Consensus        92 ~~df-------~~~~~~~l----~~aD~aIlVvDa~~gv~~qt~~~~~~~~~-----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           92 HVDF-------TIEVERSM----RVLDGAVMVYCAVGGVQPQSETVWRQANK-----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             ccch-------HHHHHHHH----HHCCEEEEEEeCCCCCcHHHHHHHHHHHH-----cCCCEEEEEeCCCcccc
Confidence            7652       22333333    35799999999875666555555544432     23468889999997653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.28  E-value=3.5e-07  Score=83.84  Aligned_cols=62  Identities=18%  Similarity=0.081  Sum_probs=40.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc-CHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA-DFEFVS   71 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~   71 (307)
                      .+|.|||||||++|+|+|.....++. ..++|+..+..  .  -+..+.|+|||   |+.++.. .+..+.
T Consensus       104 ~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~~--~--~~~~~~l~Dtp---G~~~~~~~~~~~~~  166 (262)
T 3cnl_A          104 IVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQWF--S--LENGVKILDTP---GILYKNIFSEDLAA  166 (262)
T ss_dssp             EEESTTSSHHHHHHHHHTTCC-----------CCSCEE--E--CTTSCEEESSC---EECCCCCCSHHHHH
T ss_pred             EeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEEE--E--eCCCEEEEECC---CcccCcCCCChhhc
Confidence            36999999999999999988655432 23456555421  2  35589999999   9998876 655544

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.27  E-value=4.3e-07  Score=88.47  Aligned_cols=84  Identities=11%  Similarity=-0.049  Sum_probs=43.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-----------------QVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-----------------r~v~VIDTP~~~Gl~Dt~   64 (307)
                      .+|.|||||||++|.|+|.++ .+. ....+|.....+...+ .|                 ..+.++|||   |+....
T Consensus        27 IVG~pnvGKSTL~n~Ltg~~~-~~~-~~p~tTi~p~~g~v~v-~~~r~~~l~~~~~p~~~~~~~i~lvDtp---Gl~~~a  100 (396)
T 2ohf_A           27 IVGLPNVGKSTFFNVLTNSQA-SAE-NFPFCTIDPNESRVPV-PDERFDFLCQYHKPASKIPAFLNVVDIA---GLVKGA  100 (396)
T ss_dssp             EECCSSSSHHHHHHHHHC---------------CCSEEEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECC---C-----
T ss_pred             EECCCCCCHHHHHHHHHCCCc-ccc-CCCccccCceeEEEEE-CCccceeeccccCcccccccccEEEECC---Cccccc
Confidence            379999999999999999875 221 1223454555555555 43                 359999999   987532


Q ss_pred             cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      ...+.+...    +.....+.|++|+|+++.
T Consensus       101 s~~~glg~~----~l~~ir~aD~Il~VvD~~  127 (396)
T 2ohf_A          101 HNGQGLGNA----FLSHISACDGIFHLTRAF  127 (396)
T ss_dssp             ------CCH----HHHHHHTSSSEEEEEEC-
T ss_pred             chhhHHHHH----HHHHHHhcCeEEEEEecC
Confidence            211112111    122235789999999874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.24  E-value=4.4e-06  Score=71.34  Aligned_cols=110  Identities=14%  Similarity=0.079  Sum_probs=64.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEE--EEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVN--VIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~--VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.|+|.. |... ....++.........+ +|..+.  ++|||   |......-.           ..
T Consensus        35 vG~~g~GKSTLl~~l~~~~-~~~~-~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~---g~~~~~~~~-----------~~   97 (191)
T 1oix_A           35 IGDSGVGKSNLLSRFTRNE-FNLE-SKSTIGVEFATRSIQV-DGKTIKAQIWDTA---GLERYRAIT-----------SA   97 (191)
T ss_dssp             EECTTSSHHHHHHHHHHSC-CCCS-CCCCCSEEEEEEEEEE-TTEEEEEEEEEEC---SCCSSSCCC-----------HH
T ss_pred             ECcCCCCHHHHHHHHhcCC-CCCC-CCCccceEEEEEEEEE-CCEEEEEEEEECC---CCcchhhhh-----------HH
Confidence            6999999999999999975 3221 1223333444556667 887654  59999   875322110           11


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ...+.+++|+|+++....+-+.. ..+..+...  ......++++.++.|..
T Consensus        98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~  147 (191)
T 1oix_A           98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLR  147 (191)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGG
T ss_pred             HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccc
Confidence            12467899999987622221111 112222221  12345788999998854

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.23  E-value=1.9e-06  Score=87.85  Aligned_cols=109  Identities=13%  Similarity=0.030  Sum_probs=69.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------------CCeEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------------DGQVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------------~Gr~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|.+|+||||+.|.|+|......  .+.+.|.+.......+.                 ....+++||||   |..+...
T Consensus        11 vGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTP---Ghe~F~~   85 (594)
T 1g7s_A           11 LGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTP---GHEAFTT   85 (594)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCC---TTSCCTT
T ss_pred             ECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECC---CcHHHHH
Confidence            69999999999999998643221  11233333211122220                 11259999999   8755321


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      .           ........|++|||+++...+..+....+..+..     .-..+||++|+.|...
T Consensus        86 ~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-----~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           86 L-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRM-----YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             S-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGST
T ss_pred             H-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-----cCCeEEEEeccccccc
Confidence            1           1123456899999999986787777777776654     2346899999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.22  E-value=6.4e-07  Score=86.26  Aligned_cols=85  Identities=13%  Similarity=-0.022  Sum_probs=50.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--------------------CCeEEEEEeCCCCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--------------------DGQVVNVIDTPAIARLF   61 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--------------------~Gr~v~VIDTP~~~Gl~   61 (307)
                      .+|.|||||||++|.|+|..+..+..+  ..|.....+...++                    .+..+.++|||   |+.
T Consensus         6 IVG~pnvGKSTL~n~L~~~~~~v~~~p--~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtp---Gl~   80 (368)
T 2dby_A            6 IVGLPNVGKSTLFNALTRANALAANYP--FATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIA---GLV   80 (368)
T ss_dssp             EECCSSSSHHHHHHHHHHHHTTCSSCC--GGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECC---SCC
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCC--CceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECC---Ccc
Confidence            379999999999999998753222211  12333333333331                    24579999999   987


Q ss_pred             CCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           62 DSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        62 Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      ......+.+......    .....|++|+|+++.
T Consensus        81 ~~a~~~~~lg~~fl~----~ir~ad~ii~VvD~~  110 (368)
T 2dby_A           81 KGAHKGEGLGNQFLA----HIREVAAIAHVLRCF  110 (368)
T ss_dssp             CCCCSSSCTTHHHHH----HHHTCSEEEEEEECC
T ss_pred             ccccccchHHHHHHH----HHHhCCEEEEEEECC
Confidence            542111112122111    124689999999975

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.21  E-value=3.4e-06  Score=82.47  Aligned_cols=119  Identities=8%  Similarity=0.009  Sum_probs=68.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC-eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG-QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G-r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|+|||||||++|.|.|.........  ..|.........+ ++ ..++|.|||   |+.+.......+.....+    .
T Consensus       163 VG~~gAGKSTLL~~Lsg~~~~i~~~~--ftTl~p~~G~V~~-~~~~~~~l~Dtp---Gli~~a~~~~~L~~~fl~----~  232 (416)
T 1udx_A          163 VGYPNAGKSSLLAAMTRAHPKIAPYP--FTTLSPNLGVVEV-SEEERFTLADIP---GIIEGASEGKGLGLEFLR----H  232 (416)
T ss_dssp             ECCGGGCHHHHHHHHCSSCCEECCCT--TCSSCCEEEEEEC-SSSCEEEEEECC---CCCCCGGGSCCSCHHHHH----H
T ss_pred             ECCCCCcHHHHHHHHHcCCccccCcc--cceecceeeEEEe-cCcceEEEEecc---ccccchhhhhhhhHHHHH----H
Confidence            69999999999999999865433222  1233344555556 54 899999999   986531100000011111    1


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~  132 (307)
                      ....+++|+|+++. +-...+......-...+... ..+..|||+++.|...
T Consensus       233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  283 (416)
T ss_dssp             HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence            24678999999985 21122222222222222322 3467888899888653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.16  E-value=1.9e-06  Score=91.03  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=69.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC--------------CCCCCceeEEEEEEEe---------------CCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG--------------SSEDTKTCEMQRTMLK---------------DGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s--------------~~svT~~c~~~~~~~~---------------~Gr~v~VID   53 (307)
                      +|.+|+||||+.|.|++.....+...              ..+.|-........|.               .+..+++||
T Consensus        25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD  104 (842)
T 1n0u_A           25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID  104 (842)
T ss_dssp             ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence            69999999999999997532211100              0112222222333441               167899999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ||   |..|-.  .     +..+++    ...|++|||+++....+.+....+..+..     .-...||+.|+.|..
T Consensus       105 TP---G~~df~--~-----~~~~~l----~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          105 SP---GHVDFS--S-----EVTAAL----RVTDGALVVVDTIEGVCVQTETVLRQALG-----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CC---CCCSSC--H-----HHHHHH----HTCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCEEEEEEECHHHH
T ss_pred             Cc---CchhhH--H-----HHHHHH----HhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCeEEEEECCCcc
Confidence            99   987632  1     223322    46899999999976777777655544332     234688999999965

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.14  E-value=4.4e-06  Score=85.31  Aligned_cols=112  Identities=18%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC-cccccc-------C-----CCCCCceeEEEEEEEe--CC--eEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSKV-------G-----SSEDTKTCEMQRTMLK--DG--QVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~~-------s-----~~svT~~c~~~~~~~~--~G--r~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|.+|+||||+.|.|++.. .+....       +     ..+.|-........|.  +|  ..+++||||   |..|-  
T Consensus        12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP---Gh~dF--   86 (600)
T 2ywe_A           12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP---GHVDF--   86 (600)
T ss_dssp             ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC---CSGGG--
T ss_pred             ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC---CcHhH--
Confidence            6999999999999998632 111100       0     0122322222333441  23  588999999   98652  


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                           ..++.+.+    ...|++|||+++....+.+....+.....     .-...||++|+.|....
T Consensus        87 -----~~ev~r~l----~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a  140 (600)
T 2ywe_A           87 -----SYEVSRAL----AACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSA  140 (600)
T ss_dssp             -----HHHHHHHH----HTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTC
T ss_pred             -----HHHHHHHH----HhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCcccc
Confidence                 22444443    35799999999876677666555544432     23458999999997653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.13  E-value=6.7e-06  Score=83.92  Aligned_cols=112  Identities=17%  Similarity=0.110  Sum_probs=63.1

Q ss_pred             CCCCCCcHHHHHHHHHCCC-ccccc-----c--C-----CCCCCceeEEEEEEEe--C--CeEEEEEeCCCCCCCCCCCc
Q 044972            3 ACEYIKICTTTGNSILGRR-AFKSK-----V--G-----SSEDTKTCEMQRTMLK--D--GQVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~-~F~s~-----~--s-----~~svT~~c~~~~~~~~--~--Gr~v~VIDTP~~~Gl~Dt~~   65 (307)
                      +|.+|+||||+.|.|++.. .+...     .  +     ..+.|-........|.  +  +..+++||||   |..|.  
T Consensus        10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTP---Gh~dF--   84 (599)
T 3cb4_D           10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTP---GHVDF--   84 (599)
T ss_dssp             ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECC---CCGGG--
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECC---CchHH--
Confidence            6999999999999999632 11110     0  0     1123333333344452  2  3689999999   97552  


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                           ..++.+.+.    ..|++|||+++....+.+....+.....     .-...||++|+.|....
T Consensus        85 -----~~ev~~~l~----~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a  138 (599)
T 3cb4_D           85 -----SYEVSRSLA----ACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAA  138 (599)
T ss_dssp             -----HHHHHHHHH----HCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTC
T ss_pred             -----HHHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccc
Confidence                 233444443    3689999999876666666555544432     23468999999997654

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.10  E-value=6.2e-06  Score=73.16  Aligned_cols=137  Identities=12%  Similarity=0.024  Sum_probs=76.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....+ .+..........+ ++.  .+.++|||   |-..-..        +.   ..
T Consensus        19 vGd~~VGKTsLi~r~~~~~-f~~~~~~-Tig~d~~~k~~~~-~~~~v~l~iwDta---Gqe~~~~--------l~---~~   81 (216)
T 4dkx_A           19 LGEQSVGKTSLITRFMYDS-FDNTYQA-TIGIDFLSKTMYL-EDRTIRLQLWDTA---GLERFRS--------LI---PS   81 (216)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CC-----------CEEEEEEC-SSCEEEEEEECCS---CTTTCGG--------GH---HH
T ss_pred             ECcCCcCHHHHHHHHHhCC-CCCCcCC-ccceEEEEEEEEe-cceEEEEEEEECC---Cchhhhh--------HH---HH
Confidence            6999999999999999654 6543221 1112233334445 664  56799999   8643211        11   12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||.++.++-+-+. ...+..+....+++  -.+|||-|+.|.......+         ....+.+.+..|-
T Consensus        82 ~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~---------~~e~~~~a~~~~~  150 (216)
T 4dkx_A           82 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVS---------IEEGERKAKELNV  150 (216)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSC---------HHHHHHHHHHHTC
T ss_pred             HhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCccc---------HHHHhhHHHHhCC
Confidence            3468999999999874322221 22344455555554  3678888988854321011         2234566777776


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      .|+-..-+
T Consensus       151 ~~~e~SAk  158 (216)
T 4dkx_A          151 MFIETSAK  158 (216)
T ss_dssp             EEEEEBTT
T ss_pred             eeEEEeCC
Confidence            66544433

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.09  E-value=1.9e-05  Score=81.23  Aligned_cols=109  Identities=21%  Similarity=0.122  Sum_probs=72.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|++|+||||+.|.|+|........+                ...+|-..+.....+ .+..++++|||   |..|.   
T Consensus        15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTp---G~~~f---   87 (665)
T 2dy1_A           15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAP---GYGDF---   87 (665)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECC---CSGGG---
T ss_pred             ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCC---Cccch---
Confidence            69999999999999995321100000                013344455556667 88999999999   97542   


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                          ..++...+.    ..|++|||+++...+.......+..+...     -...||+.++.|..
T Consensus        88 ----~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           88 ----VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG  139 (665)
T ss_dssp             ----HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             ----HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence                123333333    46889999998667777777666666542     34677888888876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.09  E-value=7.8e-06  Score=80.68  Aligned_cols=73  Identities=14%  Similarity=0.115  Sum_probs=47.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .|..++|||||   |..+.+   ..+..++.....  .+.||.+|||+++..  ........    ..|.+ ....+.||
T Consensus       181 ~~~DvVIIDTa---Grl~~d---~~lm~el~~i~~--~~~pd~vlLVvDA~~--gq~a~~~a----~~f~~-~~~i~gVI  245 (443)
T 3dm5_A          181 KGVDIIIVDTA---GRHKED---KALIEEMKQISN--VIHPHEVILVIDGTI--GQQAYNQA----LAFKE-ATPIGSII  245 (443)
T ss_dssp             TTCSEEEEECC---CCSSCC---HHHHHHHHHHHH--HHCCSEEEEEEEGGG--GGGHHHHH----HHHHH-SCTTEEEE
T ss_pred             CCCCEEEEECC---Ccccch---HHHHHHHHHHHH--hhcCceEEEEEeCCC--chhHHHHH----HHHHh-hCCCeEEE
Confidence            45799999999   976533   455666655432  236899999999752  22223333    33433 34677899


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      +|+.|.-.
T Consensus       246 lTKlD~~~  253 (443)
T 3dm5_A          246 VTKLDGSA  253 (443)
T ss_dssp             EECCSSCS
T ss_pred             EECCCCcc
Confidence            99998754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.08  E-value=9.9e-06  Score=79.17  Aligned_cols=111  Identities=14%  Similarity=0.013  Sum_probs=65.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC---CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS---SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~---~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|++||||||++|.|+|.....++...   ..+|+..  .....+.-..++|+|+|   |+........++    ...+.
T Consensus        75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~--~v~q~~~~~~ltv~D~~---g~~~~~~~~~~~----L~~~~  145 (413)
T 1tq4_A           75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLP---GIGSTNFPPDTY----LEKMK  145 (413)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECC---CGGGSSCCHHHH----HHHTT
T ss_pred             ECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE--EeccccccCCeeehHhh---cccchHHHHHHH----HHHcC
Confidence            699999999999999996433222111   1122211  11111112368999999   886433222222    22222


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      +  .+.+.+++ ++.+ ++..++......+...     ...+++|+|+.|.+
T Consensus       146 L--~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll  188 (413)
T 1tq4_A          146 F--YEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD  188 (413)
T ss_dssp             G--GGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred             C--CccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence            2  23355554 7877 7888877777776652     46889999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.02  E-value=1.3e-06  Score=82.60  Aligned_cols=62  Identities=13%  Similarity=0.077  Sum_probs=36.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      +|..+++||||   |+.++.   ..    +       ....|++|+|++.. ...  +...+..  ..+    -...+||
T Consensus       147 ~~~~i~liDTp---G~~~~~---~~----~-------~~~aD~vl~Vvd~~-~~~--~~~~l~~--~~~----~~p~ivv  200 (341)
T 2p67_A          147 AGYDVVIVETV---GVGQSE---TE----V-------ARMVDCFISLQIAG-GGD--DLQGIKK--GLM----EVADLIV  200 (341)
T ss_dssp             TTCSEEEEEEE---CCTTHH---HH----H-------HTTCSEEEEEECC---------CCCCH--HHH----HHCSEEE
T ss_pred             cCCCEEEEeCC---CccchH---HH----H-------HHhCCEEEEEEeCC-ccH--HHHHHHH--hhh----cccCEEE
Confidence            68899999999   987631   11    1       15789999999875 221  1011110  111    1246899


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      +|+.|...
T Consensus       201 ~NK~Dl~~  208 (341)
T 2p67_A          201 INKDDGDN  208 (341)
T ss_dssp             ECCCCTTC
T ss_pred             EECCCCCC
Confidence            99999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.01  E-value=2.3e-05  Score=69.66  Aligned_cols=77  Identities=12%  Similarity=0.015  Sum_probs=40.4

Q ss_pred             eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEE
Q 044972           47 QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLf  125 (307)
                      ..++|||||   |..+... ...+...+..    .... +++++|++.....+..+.. .+....... ...-...+||+
T Consensus       109 ~d~iiiDtp---G~~~~~~-~~~l~~~~~~----~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~  178 (262)
T 1yrb_A          109 NDYVLIDTP---GQMETFL-FHEFGVRLME----NLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPAL  178 (262)
T ss_dssp             CSEEEEECC---SSHHHHH-HSHHHHHHHH----TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEE
T ss_pred             CCEEEEeCC---Cccchhh-hhhhHHHHHH----HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEE
Confidence            489999999   9754210 0111222322    2234 8888888765234444322 111111111 11234678999


Q ss_pred             ecCCCCCC
Q 044972          126 TRGDELED  133 (307)
Q Consensus       126 T~~D~L~~  133 (307)
                      |+.|....
T Consensus       179 NK~D~~~~  186 (262)
T 1yrb_A          179 NKVDLLSE  186 (262)
T ss_dssp             CCGGGCCH
T ss_pred             eccccccc
Confidence            99997654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.00  E-value=4.7e-06  Score=79.03  Aligned_cols=63  Identities=17%  Similarity=0.122  Sum_probs=38.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .|..++|||||   |+..+   ...    +       ...+|++|+|++.+ .. ++.. .+.  ..+    .-...+||
T Consensus       170 ~~~~~iiiDTp---Gi~~~---~~~----~-------~~~aD~vl~V~d~~-~~-~~~~-~l~--~~~----~~~p~ivV  223 (355)
T 3p32_A          170 AGFDVILIETV---GVGQS---EVA----V-------ANMVDTFVLLTLAR-TG-DQLQ-GIK--KGV----LELADIVV  223 (355)
T ss_dssp             TTCCEEEEEEC---SCSSH---HHH----H-------HTTCSEEEEEEESS-TT-CTTT-TCC--TTS----GGGCSEEE
T ss_pred             CCCCEEEEeCC---CCCcH---HHH----H-------HHhCCEEEEEECCC-CC-ccHH-HHH--HhH----hhcCCEEE
Confidence            57899999999   97642   111    1       26789999999875 21 1111 111  011    11367999


Q ss_pred             EecCCCCCC
Q 044972          125 FTRGDELED  133 (307)
Q Consensus       125 fT~~D~L~~  133 (307)
                      +|+.|....
T Consensus       224 lNK~Dl~~~  232 (355)
T 3p32_A          224 VNKADGEHH  232 (355)
T ss_dssp             EECCCGGGH
T ss_pred             EECCCCcCh
Confidence            999997643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.92  E-value=6.9e-06  Score=80.58  Aligned_cols=73  Identities=14%  Similarity=0.051  Sum_probs=47.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccC-CeEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVF-DYMIV  123 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~-~~~IV  123 (307)
                      ++..++|||||   |....   +..+..++...  ...-.||.+|||++.....     .++..+ ..|.+. . ..+.|
T Consensus       179 ~~~D~vIIDT~---G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~-----~~~~~~-~~~~~~-~~~i~gv  243 (432)
T 2v3c_C          179 KKADVLIIDTA---GRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ-----QAGIQA-KAFKEA-VGEIGSI  243 (432)
T ss_dssp             SSCSEEEEECC---CSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG-----GHHHHH-HHHHTT-SCSCEEE
T ss_pred             hCCCEEEEcCC---CCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH-----HHHHHH-HHHhhc-ccCCeEE
Confidence            56799999999   98752   45556666432  2234799999999875221     233332 345443 3 55899


Q ss_pred             EEecCCCCC
Q 044972          124 VFTRGDELE  132 (307)
Q Consensus       124 LfT~~D~L~  132 (307)
                      |+|++|...
T Consensus       244 VlnK~D~~~  252 (432)
T 2v3c_C          244 IVTKLDGSA  252 (432)
T ss_dssp             EEECSSSCS
T ss_pred             EEeCCCCcc
Confidence            999998753

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.89  E-value=5.3e-05  Score=75.00  Aligned_cols=101  Identities=17%  Similarity=0.164  Sum_probs=64.0

Q ss_pred             CCCCCCCcHHHHHHHHH-------C----------CCccccccCCCCCCceeEEEE----EEEeCC--eEEEEEeCCCCC
Q 044972            2 CACEYIKICTTTGNSIL-------G----------RRAFKSKVGSSEDTKTCEMQR----TMLKDG--QVVNVIDTPAIA   58 (307)
Q Consensus         2 ~~~~tGsGKSStgNsIL-------G----------~~~F~s~~s~~svT~~c~~~~----~~~~~G--r~v~VIDTP~~~   58 (307)
                      -+|++++|||++.|.||       |          ...|..+.+..++|+..-...    ...++|  ..|+|+||+   
T Consensus        72 v~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTE---  148 (457)
T 4ido_A           72 VAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ---  148 (457)
T ss_dssp             EEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEEC---
T ss_pred             EECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEecc---
Confidence            37999999999999886       2          357877666666665433221    111244  369999999   


Q ss_pred             CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972           59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES  111 (307)
Q Consensus        59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~  111 (307)
                      |++|+..+...-..-..-.+.+|    .++|+-+. + .+++.+.+-|..+.+
T Consensus       149 G~~d~~~~~~~d~~ifaLa~LLS----S~~IyN~~-~-~i~~~~L~~L~~~te  195 (457)
T 4ido_A          149 GTFDSQSTLRDSATVFALSTMIS----SIQVYNLS-Q-NVQEDDLQHLQLFTE  195 (457)
T ss_dssp             CBTCTTCCHHHHHHHHHHHHHHC----SEEEEEEE-S-SCCHHHHHHHHHHHH
T ss_pred             CCCCcccCccccHHHHHHHHHHh----hheeeccc-c-cCCHHHHHHHHHHHH
Confidence            99998776432222222223333    36666554 3 788888877776654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.84  E-value=6.2e-06  Score=78.03  Aligned_cols=34  Identities=21%  Similarity=0.127  Sum_probs=25.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      +|.++++||||   |+.++.   ..+           ...+|++++|+..+
T Consensus       146 ~~~~~iliDT~---Gi~~~~---~~v-----------~~~~d~vl~v~d~~  179 (337)
T 2qm8_A          146 AGFDVILVETV---GVGQSE---TAV-----------ADLTDFFLVLMLPG  179 (337)
T ss_dssp             TTCCEEEEEEC---SSSSCH---HHH-----------HTTSSEEEEEECSC
T ss_pred             CCCCEEEEECC---CCCcch---hhH-----------HhhCCEEEEEEcCC
Confidence            68899999999   998642   111           14689999998764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.82  E-value=0.00015  Score=73.12  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=72.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCc-------ccccc-------------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRA-------FKSKV-------------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~-------F~s~~-------------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|..++|||||.-.||-..-       ...+.             -..+.|-.....+..| +|..|++||||   |-.|
T Consensus        37 iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP---GHvD  112 (548)
T 3vqt_A           37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP---GHQD  112 (548)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC---CGGG
T ss_pred             EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC---CcHH
Confidence            58899999999999972110       00000             0012232333456689 99999999999   9877


Q ss_pred             CCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           63 SSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        63 t~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      -.       .|+.+++..    .|..|+|+++......+-..+++...+     .--..|+++++.|....
T Consensus       113 F~-------~Ev~raL~~----~DgAvlVvda~~GV~~qT~~v~~~a~~-----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          113 FS-------EDTYRVLTA----VDSALVVIDAAKGVEAQTRKLMDVCRM-----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CS-------HHHHHHHHS----CSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCCEEEEEECTTSCCC
T ss_pred             HH-------HHHHHHHHh----cCceEEEeecCCCcccccHHHHHHHHH-----hCCceEEEEecccchhc
Confidence            43       345555543    578888998865777777777776665     24578889999997654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.79  E-value=8.1e-05  Score=69.58  Aligned_cols=75  Identities=15%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIV  123 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IV  123 (307)
                      +..+.+|||+   |+.+..... .++. .+...+..+ ...|+.+|||++..++  .+-...+..+.+.     ...++|
T Consensus       184 ~~d~~llDt~---G~~~~~~~~~~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~-----~~~t~i  252 (304)
T 1rj9_A          184 GYDLLFVDTA---GRLHTKHNLMEELK-KVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEA-----VGLTGV  252 (304)
T ss_dssp             TCSEEEECCC---CCCTTCHHHHHHHH-HHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHH-----HCCSEE
T ss_pred             CCCEEEecCC---CCCCchHHHHHHHH-HHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHH-----cCCcEE
Confidence            4578899999   986543211 1222 233333322 3469988999986422  2233333444332     345899


Q ss_pred             EEecCCCC
Q 044972          124 VFTRGDEL  131 (307)
Q Consensus       124 LfT~~D~L  131 (307)
                      ++||.|..
T Consensus       253 ivTh~d~~  260 (304)
T 1rj9_A          253 IVTKLDGT  260 (304)
T ss_dssp             EEECTTSS
T ss_pred             EEECCccc
Confidence            99998754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.76  E-value=5e-05  Score=74.67  Aligned_cols=74  Identities=11%  Similarity=0.076  Sum_probs=44.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |..... .+.....++.......  .||.++||++...  ..+.......+.+     ....+.|+
T Consensus       178 ~~~DvvIIDTa---Gr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~--gq~a~~~a~~f~~-----~~~~~gVI  244 (433)
T 3kl4_A          178 NKMDIIIVDTA---GRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASI--GQKAYDLASRFHQ-----ASPIGSVI  244 (433)
T ss_dssp             TTCSEEEEEEC---CCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGG--GGGGHHHHHHHHH-----HCSSEEEE
T ss_pred             cCCCEEEEECC---CCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCcc--chHHHHHHHHHhc-----ccCCcEEE
Confidence            36789999999   975411 1233445555533332  4789999998752  2222333333333     24567899


Q ss_pred             EecCCCC
Q 044972          125 FTRGDEL  131 (307)
Q Consensus       125 fT~~D~L  131 (307)
                      +|+.|.-
T Consensus       245 lTKlD~~  251 (433)
T 3kl4_A          245 ITKMDGT  251 (433)
T ss_dssp             EECGGGC
T ss_pred             Eeccccc
Confidence            9999864

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.71  E-value=1e-05  Score=72.85  Aligned_cols=48  Identities=19%  Similarity=0.186  Sum_probs=28.7

Q ss_pred             CCeEEEEEEeCCCC--CCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           84 GIHAVLIVFSVRNR--FSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        84 Gpha~LLVl~~~~R--fT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      +.|++|||+++.++  .+-+.. ..+..+...+.. .-..+|||.|+.|...
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~  212 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGV  212 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBC
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEcccccc
Confidence            57999999999744  444332 223333333221 2357899999999654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.55  E-value=0.00019  Score=66.79  Aligned_cols=75  Identities=12%  Similarity=0.072  Sum_probs=45.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      ++..++|||||   |..... .++.+..++.+....  ..||.+|||++.. .  .  ..++..+. .|.+ ....+.||
T Consensus       179 ~~~D~ViIDTp---g~~~~~-~~~~l~~el~~i~~~--~~~d~vllVvda~-~--g--~~~~~~~~-~~~~-~~~i~gvV  245 (297)
T 1j8m_F          179 EKMEIIIVDTA---GRHGYG-EEAALLEEMKNIYEA--IKPDEVTLVIDAS-I--G--QKAYDLAS-KFNQ-ASKIGTII  245 (297)
T ss_dssp             TTCSEEEEECC---CSCCTT-CHHHHHHHHHHHHHH--HCCSEEEEEEEGG-G--G--GGHHHHHH-HHHH-TCTTEEEE
T ss_pred             CCCCEEEEeCC---CCcccc-cHHHHHHHHHHHHHH--hcCCEEEEEeeCC-c--h--HHHHHHHH-HHHh-hCCCCEEE
Confidence            56689999999   876511 233455555432211  1588999999875 2  1  22333332 3444 25558889


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      +|+.|.-.
T Consensus       246 lnk~D~~~  253 (297)
T 1j8m_F          246 ITKMDGTA  253 (297)
T ss_dssp             EECGGGCT
T ss_pred             EeCCCCCc
Confidence            99988643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.37  E-value=0.0002  Score=70.13  Aligned_cols=113  Identities=16%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             CCCCCCcHHHHHHHHH-------CCCccccccCCCCCCc-----------eeEE-----------------EEEEEeCCe
Q 044972            3 ACEYIKICTTTGNSIL-------GRRAFKSKVGSSEDTK-----------TCEM-----------------QRTMLKDGQ   47 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL-------G~~~F~s~~s~~svT~-----------~c~~-----------------~~~~~~~Gr   47 (307)
                      +|++||||||+...|.       |+++............           ....                 ....+ .+.
T Consensus       106 vG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~-~~~  184 (433)
T 2xxa_A          106 AGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL-KFY  184 (433)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH-TTC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh-CCC
Confidence            5999999999999997       8776433222111000           0000                 00011 467


Q ss_pred             EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEec
Q 044972           48 VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTR  127 (307)
Q Consensus        48 ~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~  127 (307)
                      .++|||||   |..+..   ..+..++......  ..||.++||+++. .-  .  .++..+ ..|.+. ...+-||+|+
T Consensus       185 D~VIIDTp---G~l~~~---~~l~~~L~~~~~~--~~p~~vllVvda~-~g--~--~~~~~~-~~f~~~-l~i~gvVlnK  249 (433)
T 2xxa_A          185 DVLLVDTA---GRLHVD---EAMMDEIKQVHAS--INPVETLFVVDAM-TG--Q--DAANTA-KAFNEA-LPLTGVVLTK  249 (433)
T ss_dssp             SEEEEECC---CCCTTC---HHHHHHHHHHHHH--SCCSEEEEEEETT-BC--T--THHHHH-HHHHHH-SCCCCEEEEC
T ss_pred             CEEEEECC---Cccccc---HHHHHHHHHHHHh--hcCcceeEEeecc-hh--H--HHHHHH-HHHhcc-CCCeEEEEec
Confidence            89999999   876532   3455555543322  2589999999875 21  1  233333 345443 4445678999


Q ss_pred             CCCC
Q 044972          128 GDEL  131 (307)
Q Consensus       128 ~D~L  131 (307)
                      .|.-
T Consensus       250 ~D~~  253 (433)
T 2xxa_A          250 VDGD  253 (433)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            8864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.37  E-value=0.00036  Score=69.82  Aligned_cols=73  Identities=12%  Similarity=0.167  Sum_probs=43.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh---c-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM---A-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l---s-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~  120 (307)
                      .|..+++|||+   |.....   ..+..++.+.+..   . ...||-+|||++..  ........++.+..     ....
T Consensus       374 ~~~DvVLIDTa---Grl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDat--tGq~al~~ak~f~~-----~~~i  440 (503)
T 2yhs_A          374 RNIDVLIADTA---GRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS--TGQNAVSQAKLFHE-----AVGL  440 (503)
T ss_dssp             TTCSEEEECCC---CSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG--GTHHHHHHHHHHHH-----HTCC
T ss_pred             cCCCEEEEeCC---Cccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCc--ccHHHHHHHHHHHh-----hcCC
Confidence            45789999999   987542   3444454443322   2 23589999999864  11222333333433     2456


Q ss_pred             EEEEEecCCC
Q 044972          121 MIVVFTRGDE  130 (307)
Q Consensus       121 ~IVLfT~~D~  130 (307)
                      +.||+||-|.
T Consensus       441 tgvIlTKLD~  450 (503)
T 2yhs_A          441 TGITLTKLDG  450 (503)
T ss_dssp             SEEEEECGGG
T ss_pred             CEEEEEcCCC
Confidence            7889999775

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.36  E-value=9.2e-05  Score=63.86  Aligned_cols=18  Identities=11%  Similarity=-0.235  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|.+||||||+.|.+++.
T Consensus        36 ~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           36 MGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EECTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            699999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.35  E-value=3.2e-05  Score=72.75  Aligned_cols=53  Identities=19%  Similarity=0.029  Sum_probs=28.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDS   63 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt   63 (307)
                      +|++||||||++|.|+|.....++.-+      ..+|+..+.  ... .  .-.|+|||   |+...
T Consensus       179 vG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtp---g~~~~  237 (307)
T 1t9h_A          179 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTP---GFSSL  237 (307)
T ss_dssp             EESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSC---SCSSC
T ss_pred             ECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCC---Ccccc
Confidence            699999999999999997654433221      123332221  122 2  34899999   88653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.32  E-value=0.00036  Score=65.36  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh---c-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM---A-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l---s-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~  120 (307)
                      .+..++|||||   |...   ....+..++.+....   . +..||.++||++..   |.  ..++..+.. |-+ ...-
T Consensus       185 ~~~dvvIiDtp---g~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~-~~~-~~~i  251 (306)
T 1vma_A          185 RNKDVVIIDTA---GRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKI-FKE-AVNV  251 (306)
T ss_dssp             TTCSEEEEEEC---CCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHH-HHH-HSCC
T ss_pred             cCCCEEEEECC---Cchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHH-HHh-cCCC
Confidence            45689999999   8632   345555555543322   2 23599999999874   33  334444433 332 2566


Q ss_pred             EEEEEecCCCC
Q 044972          121 MIVVFTRGDEL  131 (307)
Q Consensus       121 ~IVLfT~~D~L  131 (307)
                      +-||+|+.|.-
T Consensus       252 ~gvVlTk~D~~  262 (306)
T 1vma_A          252 TGIILTKLDGT  262 (306)
T ss_dssp             CEEEEECGGGC
T ss_pred             CEEEEeCCCCc
Confidence            77888988753

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.31  E-value=0.0001  Score=75.44  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=72.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC----------------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS----------------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~----------------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|..++|||||.-.||-..-..+....                .+.|-.....+..| +|..|++||||   |-.|-   
T Consensus         8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP---GH~DF---   80 (638)
T 3j25_A            8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTP---GHMDF---   80 (638)
T ss_dssp             ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECC---CSSST---
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECC---CcHHH---
Confidence            588999999999999722111110000                02232333344578 99999999999   98763   


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                          ..|+.+++..    .|..|+|+++..-...+....++.....     --..|+++++.|....
T Consensus        81 ----~~Ev~raL~~----~DgavlVVDa~~GV~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           81 ----LAEVYRSLSV----LDGAILLISAKDGVQAQTRILFHALRKM-----GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             ----HHHHHHHHTT----CSEEECCEESSCTTCSHHHHHHHHHHHH-----TCSCEECCEECCSSSC
T ss_pred             ----HHHHHHHHHH----hCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCeEEEEeccccccC
Confidence                2355555543    5888999988656666666666666553     2346788899987654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.31  E-value=0.0011  Score=62.92  Aligned_cols=117  Identities=9%  Similarity=-0.017  Sum_probs=62.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|..||||||+.+.+.+.- |.........|-.....  .+...-.+.+.|||   |--+-..+.  +   +..   ...
T Consensus         5 lGdsgvGKTSLl~~~~~~~-~~~~~~~~~~Tig~~~~--~v~~~v~LqIWDTA---GQErf~~~~--l---~~~---~yy   70 (331)
T 3r7w_B            5 MGVRRCGKSSICKVVFHNM-QPLDTLYLESTSNPSLE--HFSTLIDLAVMELP---GQLNYFEPS--Y---DSE---RLF   70 (331)
T ss_dssp             ECSTTSSTTHHHHHHHSCC-CSGGGTTCCCCCSCCCE--EECSSSCEEEEECC---SCSSSCCCS--H---HHH---HHH
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCCccceecCeeeeeeE--EEccEEEEEEEECC---Cchhccchh--h---hhh---hhc
Confidence            5999999999999888653 22111111223222222  13123589999999   864432110  0   011   124


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .|.|++|||+++.++|...-.....++..+-...---.++||.++.|...+
T Consensus        71 r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~  121 (331)
T 3r7w_B           71 KSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE  121 (331)
T ss_dssp             TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred             cCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence            689999999998766433222222222221111112356677777776544

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.30  E-value=0.00019  Score=66.76  Aligned_cols=72  Identities=14%  Similarity=0.074  Sum_probs=44.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |+....   .....++.+.  +....++.+++|++...  .   ...+..+...|.  .....-||
T Consensus       181 ~~~dlvIiDT~---G~~~~~---~~~~~el~~~--l~~~~~~~~~lVl~at~--~---~~~~~~~~~~~~--~l~~~giV  245 (296)
T 2px0_A          181 SEYDHVFVDTA---GRNFKD---PQYIDELKET--IPFESSIQSFLVLSATA--K---YEDMKHIVKRFS--SVPVNQYI  245 (296)
T ss_dssp             GGSSEEEEECC---CCCTTS---HHHHHHHHHH--SCCCTTEEEEEEEETTB--C---HHHHHHHTTTTS--SSCCCEEE
T ss_pred             cCCCEEEEeCC---CCChhh---HHHHHHHHHH--HhhcCCCeEEEEEECCC--C---HHHHHHHHHHHh--cCCCCEEE
Confidence            45689999999   987532   3344444432  22235788889997651  1   223445556665  35566778


Q ss_pred             EecCCCC
Q 044972          125 FTRGDEL  131 (307)
Q Consensus       125 fT~~D~L  131 (307)
                      +|+.|.-
T Consensus       246 ltk~D~~  252 (296)
T 2px0_A          246 FTKIDET  252 (296)
T ss_dssp             EECTTTC
T ss_pred             EeCCCcc
Confidence            8998754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.26  E-value=0.00053  Score=64.48  Aligned_cols=73  Identities=22%  Similarity=0.253  Sum_probs=44.5

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH---HHhcCC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC---IGMAKD-GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc---v~ls~p-Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~  120 (307)
                      .+..++|||||   |....   .+.+..++...   +....| .||.++||++..   +.  ..++..++. |.+. ...
T Consensus       190 ~~yD~VIIDTp---g~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~---~~--~~~l~~~~~-~~~~-~~i  256 (320)
T 1zu4_A          190 QNYDLLLIDTA---GRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDAT---TG--QNGVIQAEE-FSKV-ADV  256 (320)
T ss_dssp             TTCSEEEEECC---CCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG---GT--HHHHHHHHH-HTTT-SCC
T ss_pred             cCCCEEEEcCC---Ccccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---Cc--HHHHHHHHH-Hhhc-CCC
Confidence            56789999999   87542   23344444332   222234 589999999875   22  345555554 5443 445


Q ss_pred             EEEEEecCCC
Q 044972          121 MIVVFTRGDE  130 (307)
Q Consensus       121 ~IVLfT~~D~  130 (307)
                      .=||+|+.|.
T Consensus       257 ~GvVltk~d~  266 (320)
T 1zu4_A          257 SGIILTKMDS  266 (320)
T ss_dssp             CEEEEECGGG
T ss_pred             cEEEEeCCCC
Confidence            5578898775

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.21  E-value=0.00094  Score=63.06  Aligned_cols=70  Identities=19%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf  125 (307)
                      +..+++||||   |........-.-...+.+.+     .||-.++|++....     ..++..++. |.+ ....++|++
T Consensus       211 ~~d~vliDta---G~~~~~~~l~~eL~~i~ral-----~~de~llvLDa~t~-----~~~~~~~~~-~~~-~~~it~iil  275 (328)
T 3e70_C          211 GIDVVLIDTA---GRSETNRNLMDEMKKIARVT-----KPNLVIFVGDALAG-----NAIVEQARQ-FNE-AVKIDGIIL  275 (328)
T ss_dssp             TCSEEEEEEC---CSCCTTTCHHHHHHHHHHHH-----CCSEEEEEEEGGGT-----THHHHHHHH-HHH-HSCCCEEEE
T ss_pred             cchhhHHhhc---cchhHHHHHHHHHHHHHHHh-----cCCCCEEEEecHHH-----HHHHHHHHH-HHH-hcCCCEEEE
Confidence            4678899999   98654332222122233322     27788888886422     233333332 221 346689999


Q ss_pred             ecCCC
Q 044972          126 TRGDE  130 (307)
Q Consensus       126 T~~D~  130 (307)
                      ||.|.
T Consensus       276 TKlD~  280 (328)
T 3e70_C          276 TKLDA  280 (328)
T ss_dssp             ECGGG
T ss_pred             eCcCC
Confidence            99886

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.05  E-value=0.00025  Score=65.65  Aligned_cols=55  Identities=20%  Similarity=0.033  Sum_probs=32.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      +|++||||||++|.|+|.....++.-.      ..+|+....  ..+ . ..-.|+|||   |+....
T Consensus       175 ~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~-~-~~g~v~q~p---~~~~~~  235 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKF-D-FGGYVVDTP---GFANLE  235 (301)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EEC-T-TSCEEESSC---SSTTCC
T ss_pred             ECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EEc-C-CCCEEEECc---CCCccC
Confidence            699999999999999997654433211      123332211  111 1 234799999   886543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.04  E-value=0.0036  Score=64.66  Aligned_cols=112  Identities=22%  Similarity=0.190  Sum_probs=70.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC----------------CCCCCceeEEEEEEEe------CCeEEEEEeCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG----------------SSEDTKTCEMQRTMLK------DGQVVNVIDTPAIARL   60 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s----------------~~svT~~c~~~~~~~~------~Gr~v~VIDTP~~~Gl   60 (307)
                      +|..++|||||.-.||-..-..+..+                ..+.|-.....+..|.      ++..|++||||   |-
T Consensus        19 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP---GH   95 (709)
T 4fn5_A           19 CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP---GH   95 (709)
T ss_dssp             ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC---SC
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC---CC
Confidence            58899999999988872211111000                0122222333344552      24789999999   98


Q ss_pred             CCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           61 FDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        61 ~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .|-.       .|+.+++..    .|..|+|+++......+...+++.....     --..|+++++-|....
T Consensus        96 vDF~-------~Ev~~aLr~----~DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           96 VDFT-------IEVERSLRV----LDGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             TTCH-------HHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSSTTC
T ss_pred             cccH-------HHHHHHHHH----hCeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEccccccCc
Confidence            7632       355666655    4678888887667888877777776653     4468889999997643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.01  E-value=0.00045  Score=64.09  Aligned_cols=52  Identities=13%  Similarity=0.001  Sum_probs=30.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCC------CCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSS------EDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~------svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|++||||||++|.|+ .....++.-..      .+|+....  ... . ..-.|+|||   |+..
T Consensus       171 ~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~-~-~~g~v~d~p---g~~~  228 (302)
T 2yv5_A          171 AGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPF-G-KGSFVGDTP---GFSK  228 (302)
T ss_dssp             ECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEE-T-TTEEEESSC---CCSS
T ss_pred             ECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEc-C-CCcEEEECc---CcCc
Confidence            6999999999999999 65443332111      12332211  112 1 234789999   8863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.90  E-value=0.00024  Score=68.15  Aligned_cols=20  Identities=20%  Similarity=0.024  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|||||||+|.|+|...
T Consensus       221 vG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          221 AGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             ECCTTSSHHHHHHHHHCCSS
T ss_pred             ECCCCccHHHHHHHHhcccc
Confidence            69999999999999999765

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.70  E-value=0.0045  Score=60.60  Aligned_cols=71  Identities=20%  Similarity=0.221  Sum_probs=43.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |....   +..+..++.......  .||.+|||++.. .  .  ..++..+ ..|.+. ...+-||
T Consensus       179 ~~~DvVIIDTa---G~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~-t--g--q~av~~a-~~f~~~-l~i~GVI  243 (425)
T 2ffh_A          179 EARDLILVDTA---GRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM-T--G--QEALSVA-RAFDEK-VGVTGLV  243 (425)
T ss_dssp             TTCSEEEEECC---CCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG-G--T--THHHHHH-HHHHHH-TCCCEEE
T ss_pred             CCCCEEEEcCC---Ccccc---cHHHHHHHHHhhhcc--CCceEEEEEecc-c--h--HHHHHHH-HHHHhc-CCceEEE
Confidence            56689999999   87643   234555554433222  588889999875 2  2  2334433 335443 4557788


Q ss_pred             EecCCC
Q 044972          125 FTRGDE  130 (307)
Q Consensus       125 fT~~D~  130 (307)
                      +|+.|.
T Consensus       244 lTKlD~  249 (425)
T 2ffh_A          244 LTKLDG  249 (425)
T ss_dssp             EESGGG
T ss_pred             EeCcCC
Confidence            998875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.61  E-value=0.0062  Score=56.62  Aligned_cols=98  Identities=12%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             CeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhcC-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMAK-DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIV  123 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls~-pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IV  123 (307)
                      +..+.++||.   |+.+... ...++. ....++..+. ..|+-+|||++..+.+...  ..+..+.+     ....++|
T Consensus       183 ~~d~~lldt~---gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLDptsglD~~--~~~~~~~~-----~~g~t~i  251 (302)
T 3b9q_A          183 GYDVVLCDTS---GRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNE-----VVGITGL  251 (302)
T ss_dssp             TCSEEEECCC---CCSSCCHHHHHHHH-HHHHHHHTTSTTCCSEEEEEEEGGGGGGGH--HHHHHHHH-----HTCCCEE
T ss_pred             CCcchHHhcC---CCCcchhHHHHHHH-HHHHHHHHhhccCCCeeEEEEeCCCCcCHH--HHHHHHHH-----hcCCCEE
Confidence            4567899999   9865321 112222 2223333333 4688777777632222222  22233322     2346899


Q ss_pred             EEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCC
Q 044972          124 VFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNK  167 (307)
Q Consensus       124 LfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk  167 (307)
                      ++||-|....             ....-.++...+.+...+.+-
T Consensus       252 iiThlD~~~~-------------~g~~l~~~~~~~~pi~~i~~G  282 (302)
T 3b9q_A          252 ILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG  282 (302)
T ss_dssp             EEECCSSCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred             EEeCCCCCCc-------------cChheehHHHHCCCEEEEeCC
Confidence            9999664321             123445666667777766654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.52  E-value=0.0056  Score=58.54  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=50.8

Q ss_pred             CeEEEEEeCCCCCCCCCCCc-CHHHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEE
Q 044972           46 GQVVNVIDTPAIARLFDSSA-DFEFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMI  122 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~-~~~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~I  122 (307)
                      +..+.++||.   |+.+... ...++. .+..++..+ ...|+-+|||++.   .+..|. ..+..+.+     ....++
T Consensus       240 ~~d~~lldt~---Gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLDp---ttglD~~~~~~~~~~-----~~g~t~  307 (359)
T 2og2_A          240 GYDVVLCDTS---GRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLDG---NTGLNMLPQAREFNE-----VVGITG  307 (359)
T ss_dssp             TCSEEEEECC---CCSSCCHHHHHHHH-HHHHHHHHHSTTCCSEEEEEEEG---GGGGGGHHHHHHHHH-----HTCCCE
T ss_pred             CCHHHHHHhc---CCChhhhhHHHHHH-HHHHHHHHHHhcCCCceEEEEcC---CCCCCHHHHHHHHHH-----hcCCeE
Confidence            4567899999   9875421 112222 222233322 3468877777763   233221 12222322     235689


Q ss_pred             EEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCC
Q 044972          123 VVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNK  167 (307)
Q Consensus       123 VLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk  167 (307)
                      |++||-|....             ....-.++...+-+...+.+-
T Consensus       308 iiiThlD~~~~-------------gG~~lsi~~~~~~pI~~ig~G  339 (359)
T 2og2_A          308 LILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG  339 (359)
T ss_dssp             EEEESCTTCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred             EEEecCccccc-------------ccHHHHHHHHhCCCEEEEeCC
Confidence            99999664322             122345556666666666553

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.88  E-value=0.072  Score=48.20  Aligned_cols=19  Identities=21%  Similarity=-0.331  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|-.
T Consensus        47 ~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999974

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.80  E-value=0.00055  Score=60.32  Aligned_cols=48  Identities=19%  Similarity=0.110  Sum_probs=32.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCc--cccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972            3 ACEYIKICTTTGNSILGRRA--FKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP   55 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~--F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP   55 (307)
                      +||+||||||+.|.|++...  |....  ...|+....  +++ +|..+.+||++
T Consensus        25 ~GPSGaGKsTL~~~L~~~~~~~~~~~v--s~TTR~p~~--gE~-~G~~y~fvs~~   74 (197)
T 3ney_A           25 IGASGVGRSHIKNALLSQNPEKFVYPV--PYTTRPPRK--SEE-DGKEYHFISTE   74 (197)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTTTEECCC--CEECSCCCT--TCC-TTSSCEECCHH
T ss_pred             ECcCCCCHHHHHHHHHhhCCccEEeee--cccccCCcC--Cee-ccccceeccHH
Confidence            69999999999999998642  43222  122333222  346 88888888887

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.98  E-value=0.0067  Score=51.20  Aligned_cols=19  Identities=5%  Similarity=-0.127  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||++|.|+|..
T Consensus        11 ~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A           11 LGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            6999999999999999853

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.92  E-value=0.075  Score=44.66  Aligned_cols=67  Identities=9%  Similarity=-0.016  Sum_probs=38.2

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      ...++|||||   +..+     ... ..+   +.    ..|.+|+|+..+ .++ .. ..+++.+..+-.........||
T Consensus        75 ~yD~viiD~~---~~~~-----~~~-~~~---l~----~ad~viiv~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~vv  136 (206)
T 4dzz_A           75 DYDFAIVDGA---GSLS-----VIT-SAA---VM----VSDLVIIPVTPS-PLD-FSAAGSVVTVLEAQAYSRKVEARFL  136 (206)
T ss_dssp             TSSEEEEECC---SSSS-----HHH-HHH---HH----HCSEEEEEECSC-TTT-HHHHHHHHHHHTTSCGGGCCEEEEE
T ss_pred             CCCEEEEECC---CCCC-----HHH-HHH---HH----HCCEEEEEecCC-HHH-HHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            4689999999   6542     111 111   11    257888888877 666 44 3445555543211112234888


Q ss_pred             EecCCC
Q 044972          125 FTRGDE  130 (307)
Q Consensus       125 fT~~D~  130 (307)
                      +|+.+.
T Consensus       137 ~N~~~~  142 (206)
T 4dzz_A          137 ITRKIE  142 (206)
T ss_dssp             ECSBCT
T ss_pred             EeccCC
Confidence            998873

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.90  E-value=0.0072  Score=52.05  Aligned_cols=18  Identities=6%  Similarity=-0.221  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||++|.|+|.
T Consensus        10 vGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A           10 SGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999985

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.76  E-value=0.0094  Score=49.93  Aligned_cols=18  Identities=6%  Similarity=-0.175  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        15 ~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           15 SGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EECTTSCHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            699999999999999986

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.75  E-value=0.0084  Score=50.72  Aligned_cols=18  Identities=6%  Similarity=-0.169  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        13 ~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A           13 SAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHhh
Confidence            699999999999999985

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.71  E-value=0.0085  Score=51.63  Aligned_cols=19  Identities=11%  Similarity=-0.171  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||++|.|.|.-
T Consensus        26 ~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           26 SGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            6999999999999999853

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.50  E-value=2.9  Score=43.72  Aligned_cols=18  Identities=17%  Similarity=-0.182  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||+|||++...|.+.
T Consensus       197 ~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          197 IGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             EECTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            699999999999988764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.49  E-value=0.01  Score=53.89  Aligned_cols=18  Identities=17%  Similarity=-0.145  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|+|.
T Consensus        31 ~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             ECSTTCSHHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHHh
Confidence            699999999999999985

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.47  E-value=0.22  Score=49.88  Aligned_cols=19  Identities=11%  Similarity=-0.274  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus       375 vG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          375 VGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.44  E-value=0.011  Score=50.52  Aligned_cols=19  Identities=26%  Similarity=-0.095  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|.-
T Consensus         6 ~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            6 TGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            6999999999999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.39  E-value=0.036  Score=49.05  Aligned_cols=43  Identities=12%  Similarity=-0.060  Sum_probs=30.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|+.||||||+++.|+|--...             .+...+ +|+--.|-..|   .+|.
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~~p~-------------~G~i~~-~g~i~~v~q~~---~~~~   82 (229)
T 2pze_A           40 AGSTGAGKTSLLMMIMGELEPS-------------EGKIKH-SGRISFCSQFS---WIMP   82 (229)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCCS-------------EEEEEE-CSCEEEECSSC---CCCS
T ss_pred             ECCCCCCHHHHHHHHhCCCcCC-------------ccEEEE-CCEEEEEecCC---cccC
Confidence            6999999999999999964211             234456 77655566667   5554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.22  E-value=0.015  Score=51.87  Aligned_cols=19  Identities=16%  Similarity=-0.359  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|--
T Consensus        37 iG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           37 MGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999964

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.20  E-value=0.013  Score=51.29  Aligned_cols=19  Identities=11%  Similarity=-0.286  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|..
T Consensus        29 vGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           29 CGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            6999999999999999853

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.20  E-value=0.058  Score=48.05  Aligned_cols=19  Identities=5%  Similarity=-0.183  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.01  E-value=0.035  Score=61.26  Aligned_cols=19  Identities=5%  Similarity=-0.463  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      ||+|||||||+++.|+|--
T Consensus      1111 VG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1111 VGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             ECSTTSSTTSHHHHHTTSS
T ss_pred             ECCCCChHHHHHHHHhcCc
Confidence            7999999999999999853

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=93.97  E-value=0.013  Score=50.50  Aligned_cols=18  Identities=11%  Similarity=-0.125  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        28 ~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           28 SGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             ECCTTSCTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999885

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.96  E-value=0.015  Score=55.41  Aligned_cols=18  Identities=17%  Similarity=-0.141  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||||||||+++|+|.
T Consensus       129 ~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          129 TGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            699999999999999985

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=93.96  E-value=0.018  Score=48.25  Aligned_cols=17  Identities=6%  Similarity=-0.277  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.+++
T Consensus        15 ~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           15 IGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             ECCTTSCHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHcc
Confidence            69999999999996543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.84  E-value=0.017  Score=51.11  Aligned_cols=19  Identities=5%  Similarity=-0.518  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        36 iG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           36 IGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EECTTSCHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.82  E-value=0.018  Score=48.61  Aligned_cols=19  Identities=11%  Similarity=-0.204  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|.-
T Consensus        12 ~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A           12 SGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ECSTTSCHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhh
Confidence            6999999999999998764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=93.78  E-value=0.15  Score=44.47  Aligned_cols=17  Identities=6%  Similarity=-0.355  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|..
T Consensus        45 ~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           45 LGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998854

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=93.72  E-value=0.015  Score=49.65  Aligned_cols=18  Identities=17%  Similarity=-0.069  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        12 ~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A           12 AGGTASGKTTLAQALART   29 (211)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999885

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.72  E-value=0.021  Score=51.97  Aligned_cols=19  Identities=11%  Similarity=-0.282  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|--
T Consensus        43 iG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           43 IGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ECCTTSCHHHHHHHHTSSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999964

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.64  E-value=0.024  Score=50.78  Aligned_cols=19  Identities=11%  Similarity=-0.331  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        30 iG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           30 LGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=93.63  E-value=0.019  Score=48.18  Aligned_cols=17  Identities=12%  Similarity=-0.201  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|.+
T Consensus         8 ~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            69999999999999986

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.58  E-value=0.023  Score=52.10  Aligned_cols=19  Identities=11%  Similarity=-0.344  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|--
T Consensus        40 iGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           40 LGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            6999999999999999964

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.58  E-value=0.023  Score=51.24  Aligned_cols=19  Identities=21%  Similarity=-0.198  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        39 iG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           39 IGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.57  E-value=0.019  Score=55.89  Aligned_cols=18  Identities=17%  Similarity=-0.271  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||||||||+|+|+|.
T Consensus       173 ~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          173 TGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999985

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.57  E-value=0.02  Score=50.58  Aligned_cols=19  Identities=5%  Similarity=-0.120  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +||+||||||+.+.|+|..
T Consensus        22 ~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           22 SAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             ECCTTSCHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            6999999999999999964

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=93.55  E-value=0.32  Score=48.75  Aligned_cols=19  Identities=16%  Similarity=-0.401  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus       373 vG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          373 VGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             ECSTTSSHHHHHTTTTTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999964

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.54  E-value=0.021  Score=54.19  Aligned_cols=19  Identities=21%  Similarity=-0.083  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||++|.|+|.-
T Consensus       181 vG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             EESSSSCHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            6999999999999999963

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.50  E-value=0.024  Score=50.91  Aligned_cols=19  Identities=11%  Similarity=-0.319  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|--
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.49  E-value=0.025  Score=51.30  Aligned_cols=19  Identities=11%  Similarity=-0.424  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        38 iG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=93.47  E-value=0.022  Score=46.86  Aligned_cols=18  Identities=11%  Similarity=-0.038  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|++||||||+++.|.+.
T Consensus        10 ~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A           10 VGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999998664

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.46  E-value=0.027  Score=50.60  Aligned_cols=18  Identities=17%  Similarity=-0.008  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+.||||||+++.|.|-
T Consensus        35 ~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ECSTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999996

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.39  E-value=0.023  Score=49.01  Aligned_cols=19  Identities=5%  Similarity=-0.200  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +||+||||||+++.|++.-
T Consensus        14 ~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           14 SGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             ECCTTSCHHHHHHHHHHST
T ss_pred             ECcCCCCHHHHHHHHHhhC
Confidence            6999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.36  E-value=0.027  Score=49.71  Aligned_cols=19  Identities=16%  Similarity=-0.351  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        41 iG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.30  E-value=0.027  Score=50.97  Aligned_cols=19  Identities=5%  Similarity=-0.272  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus        52 ~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            6999999999999999963

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.30  E-value=0.032  Score=49.21  Aligned_cols=21  Identities=14%  Similarity=-0.135  Sum_probs=18.4

Q ss_pred             CCCCCCcHHHHHHHHH---CCCcc
Q 044972            3 ACEYIKICTTTGNSIL---GRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~~~F   23 (307)
                      +|++||||||+++.|.   |-..+
T Consensus        33 ~G~~GsGKSTl~k~La~~lg~~~~   56 (246)
T 2bbw_A           33 LGPPGSGKGTVCQRIAQNFGLQHL   56 (246)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeEe
Confidence            5999999999999999   87544

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.30  E-value=0.027  Score=50.22  Aligned_cols=19  Identities=26%  Similarity=-0.104  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=93.29  E-value=0.15  Score=45.28  Aligned_cols=17  Identities=6%  Similarity=-0.318  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|.+
T Consensus        57 ~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           57 YGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             ESSSSSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999999999854

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.27  E-value=0.03  Score=50.85  Aligned_cols=18  Identities=17%  Similarity=0.019  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+.||||||+++.|.|-
T Consensus        52 ~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECCTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999996

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.25  E-value=0.029  Score=50.66  Aligned_cols=19  Identities=11%  Similarity=-0.211  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        32 iG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999964

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.25  E-value=0.023  Score=54.19  Aligned_cols=18  Identities=17%  Similarity=-0.145  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||||||||++.|+|.
T Consensus       142 vG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          142 TGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999984

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=93.23  E-value=0.054  Score=49.50  Aligned_cols=17  Identities=0%  Similarity=-0.361  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++.+|..
T Consensus        42 ~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           42 WGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=93.22  E-value=0.03  Score=45.21  Aligned_cols=15  Identities=0%  Similarity=-0.374  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|+|||||||+++.|
T Consensus         7 ~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLL   21 (179)
T ss_dssp             ECCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            699999999999988

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.18  E-value=0.036  Score=49.47  Aligned_cols=19  Identities=11%  Similarity=-0.415  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|--
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.16  E-value=0.37  Score=44.23  Aligned_cols=18  Identities=11%  Similarity=-0.320  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|++|+|||++++.|.+.
T Consensus        50 ~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           50 LGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=93.15  E-value=0.16  Score=56.10  Aligned_cols=19  Identities=11%  Similarity=-0.317  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|.-
T Consensus       450 vG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          450 VGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             EECSSSCHHHHHHHHTTSS
T ss_pred             EecCCCcHHHHHHHhcccc
Confidence            7999999999999999964

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.14  E-value=0.023  Score=56.68  Aligned_cols=18  Identities=33%  Similarity=0.001  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||||||||+|+|+|.
T Consensus       266 ~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          266 VGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             EESTTSSHHHHHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999985

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=93.14  E-value=0.021  Score=48.80  Aligned_cols=18  Identities=11%  Similarity=-0.114  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|+|.
T Consensus        31 ~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999883

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.08  E-value=0.031  Score=50.98  Aligned_cols=19  Identities=5%  Similarity=-0.274  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        51 ~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999974

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.07  E-value=0.031  Score=50.85  Aligned_cols=19  Identities=5%  Similarity=-0.443  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        56 iG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCCcHHHHHHHHHcCC
Confidence            6999999999999999964

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.05  E-value=0.034  Score=47.58  Aligned_cols=18  Identities=11%  Similarity=-0.237  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|...
T Consensus        18 ~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           18 CGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            699999999999999754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.04  E-value=0.031  Score=50.66  Aligned_cols=19  Identities=16%  Similarity=-0.193  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        39 iG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999974

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=93.01  E-value=0.033  Score=46.45  Aligned_cols=18  Identities=11%  Similarity=-0.298  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|++|+|||++++.|.|.
T Consensus        44 ~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           44 VGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.01  E-value=0.13  Score=45.76  Aligned_cols=17  Identities=12%  Similarity=-0.210  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|..
T Consensus        70 ~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           70 EGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999999998864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=93.00  E-value=0.032  Score=50.34  Aligned_cols=20  Identities=15%  Similarity=-0.132  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.||||||+++.|.|--.
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             ECCSSSSHHHHHHHHTTSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            59999999999999999743

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=92.99  E-value=0.027  Score=52.70  Aligned_cols=18  Identities=11%  Similarity=-0.215  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|+|-
T Consensus       132 vGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          132 IGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhhh
Confidence            699999999999999974

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.97  E-value=0.022  Score=53.39  Aligned_cols=19  Identities=21%  Similarity=-0.240  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||++|.|+|.-
T Consensus       177 ~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             EESTTSCHHHHHHHGGGGS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999963

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=92.91  E-value=0.023  Score=49.56  Aligned_cols=19  Identities=21%  Similarity=0.064  Sum_probs=11.4

Q ss_pred             CCCCCCcHHHHHHHHH-CCC
Q 044972            3 ACEYIKICTTTGNSIL-GRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL-G~~   21 (307)
                      +|++||||||+++.|. |.-
T Consensus        33 ~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           33 SSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECSCC----CHHHHHHC---
T ss_pred             ECCCCCCHHHHHHHHHhcCC
Confidence            6999999999999999 863

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=92.83  E-value=0.031  Score=47.69  Aligned_cols=18  Identities=11%  Similarity=-0.169  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        35 ~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           35 MGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.76  E-value=0.026  Score=52.69  Aligned_cols=19  Identities=5%  Similarity=-0.356  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus        86 vG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           86 VGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ESSSCHHHHHHHHHHTTSS
T ss_pred             ECCCCchHHHHHHHHHcCC
Confidence            6999999999999999964

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=92.72  E-value=0.5  Score=39.01  Aligned_cols=17  Identities=12%  Similarity=-0.216  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|++|+|||++...+..
T Consensus        44 ~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           44 SGPPGTGKTATAIALAR   60 (226)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.69  E-value=0.042  Score=46.72  Aligned_cols=17  Identities=18%  Similarity=-0.158  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|.+
T Consensus         8 ~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            8 TGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             ECSTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999976

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.63  E-value=0.034  Score=45.97  Aligned_cols=17  Identities=0%  Similarity=-0.271  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|.+
T Consensus        14 ~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A           14 MGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999998854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=92.57  E-value=0.042  Score=45.06  Aligned_cols=17  Identities=6%  Similarity=-0.287  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+|||||||+++.|..
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            8 IGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHh
Confidence            59999999999999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.56  E-value=0.69  Score=42.19  Aligned_cols=17  Identities=12%  Similarity=-0.242  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|++|+||||+++.|.|
T Consensus        42 ~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           42 YGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             ECSTTSSHHHHHHTHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998877

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=92.54  E-value=0.041  Score=44.77  Aligned_cols=16  Identities=6%  Similarity=-0.122  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|++||||||+++.|.
T Consensus         7 ~G~~GsGKsT~~~~L~   22 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLS   22 (173)
T ss_dssp             ECSSSSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999884

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=92.48  E-value=0.037  Score=47.57  Aligned_cols=18  Identities=6%  Similarity=-0.311  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.+.
T Consensus        11 ~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A           11 DGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999988653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=92.41  E-value=0.35  Score=45.96  Aligned_cols=83  Identities=16%  Similarity=0.164  Sum_probs=51.4

Q ss_pred             CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCC---------HHHH
Q 044972           33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFS---------EEEG  103 (307)
Q Consensus        33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT---------~ee~  103 (307)
                      |.........+ ++..+.++|||   |-..           ...-...+..+.|+||||+++. .+.         ..-.
T Consensus       188 T~Gi~~~~~~~-~~~~l~i~Dt~---Gq~~-----------~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~  251 (362)
T 1zcb_A          188 TKGIHEYDFEI-KNVPFKMVDVG---GQRS-----------ERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLT  251 (362)
T ss_dssp             CSSEEEEEEEE-TTEEEEEEEEC---C------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHH
T ss_pred             ccceEEEEeee-CCeEEEEEecc---chhh-----------hhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHH
Confidence            33444455667 88999999999   8522           1111234678999999999997 542         2223


Q ss_pred             HHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972          104 AAIHSLESLFGKKV--FDYMIVVFTRGDEL  131 (307)
Q Consensus       104 ~~l~~i~~~FG~~~--~~~~IVLfT~~D~L  131 (307)
                      ..+.++..+.....  --.+||++|+.|.+
T Consensus       252 es~~~~~~i~~~~~~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          252 ESLNIFETIVNNRVFSNVSIILFLNKTDLL  281 (362)
T ss_dssp             HHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHHHHHHHHhcchhhCCCCEEEEEEChhhh
Confidence            44555555554432  24688889988865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=92.39  E-value=0.026  Score=49.49  Aligned_cols=21  Identities=10%  Similarity=-0.284  Sum_probs=18.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccc
Q 044972            3 ACEYIKICTTTGNSILGRRAFK   24 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~   24 (307)
                      +|+.||||||+++.|.|- ...
T Consensus        28 iG~nGsGKSTLl~~l~Gl-~p~   48 (208)
T 3b85_A           28 LGPAGSGKTYLAMAKAVQ-ALQ   48 (208)
T ss_dssp             ECCTTSSTTHHHHHHHHH-HHH
T ss_pred             ECCCCCCHHHHHHHHhcC-CCc
Confidence            699999999999999997 433

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.37  E-value=0.05  Score=49.88  Aligned_cols=19  Identities=16%  Similarity=-0.354  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        53 iG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999974

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=92.28  E-value=0.039  Score=51.41  Aligned_cols=18  Identities=17%  Similarity=-0.080  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        96 ~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           96 AGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHHhh
Confidence            699999999999999885

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.28  E-value=0.046  Score=49.70  Aligned_cols=19  Identities=21%  Similarity=-0.207  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|-.
T Consensus        36 ~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           36 LGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=92.27  E-value=0.048  Score=44.95  Aligned_cols=17  Identities=0%  Similarity=-0.310  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|.+||||||+++.+..
T Consensus         9 ~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            9 NGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998854

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=92.26  E-value=0.04  Score=46.98  Aligned_cols=18  Identities=6%  Similarity=-0.333  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.+.
T Consensus        31 ~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           31 TGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999775

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=92.23  E-value=1.1  Score=47.82  Aligned_cols=48  Identities=15%  Similarity=0.093  Sum_probs=26.7

Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHH-HHHHHhhccccCCeEEEEEecCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAI-HSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l-~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ...|.++||==| +...+..+...+ ..+.+.+-.. ...++|+.||-.++
T Consensus       739 a~~~sLlLLDEp-~~GlD~~~~~~i~~~il~~l~~~-~g~~vl~aTH~~el  787 (934)
T 3thx_A          739 ATKDSLIIIDEL-GRGTSTYDGFGLAWAISEYIATK-IGAFCMFATHFHEL  787 (934)
T ss_dssp             CCTTCEEEEESC-SCSSCHHHHHHHHHHHHHHHHHT-TCCEEEEEESCGGG
T ss_pred             ccCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEcCcHHH
Confidence            456666655444 325666666554 4444444321 34588889996544

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.18  E-value=0.45  Score=46.56  Aligned_cols=63  Identities=11%  Similarity=0.006  Sum_probs=37.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~ls   81 (307)
                      .||||+|||+++.+|.+.                        -|.++..|+.|   .|.+..... +...+.+   +..+
T Consensus       221 ~GPPGtGKTllAkAiA~e------------------------~~~~~~~v~~s---~l~sk~~Gese~~ir~~---F~~A  270 (437)
T 4b4t_L          221 YGPPGTGKTLLAKAVAAT------------------------IGANFIFSPAS---GIVDKYIGESARIIREM---FAYA  270 (437)
T ss_dssp             ESCTTSSHHHHHHHHHHH------------------------HTCEEEEEEGG---GTCCSSSSHHHHHHHHH---HHHH
T ss_pred             ECCCCCcHHHHHHHHHHH------------------------hCCCEEEEehh---hhccccchHHHHHHHHH---HHHH
Confidence            699999999999998653                        23356677778   777655433 2223333   3332


Q ss_pred             CCCCeEEEEEEeCC
Q 044972           82 KDGIHAVLIVFSVR   95 (307)
Q Consensus        82 ~pGpha~LLVl~~~   95 (307)
                      ....-+|||+-.++
T Consensus       271 ~~~~P~IifiDEiD  284 (437)
T 4b4t_L          271 KEHEPCIIFMDEVD  284 (437)
T ss_dssp             HHSCSEEEEEECCC
T ss_pred             HhcCCceeeeeccc
Confidence            22223566665554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=92.10  E-value=0.042  Score=47.41  Aligned_cols=20  Identities=10%  Similarity=-0.434  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++|+||||+++.|.|.-.
T Consensus         7 ~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHhhcc
Confidence            69999999999999998643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=91.99  E-value=0.17  Score=45.32  Aligned_cols=17  Identities=6%  Similarity=-0.253  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+||+|||+++..|.+
T Consensus        53 ~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           53 LGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             ESCSSSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            59999999999998865

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.88  E-value=0.93  Score=44.79  Aligned_cols=95  Identities=13%  Similarity=0.099  Sum_probs=52.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHh
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGM   80 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~l   80 (307)
                      ..||||+|||+++.+|.+.                        -|.++..|+.+   .|.+..... +...+++-.....
T Consensus       248 LyGPPGTGKTlLAkAiA~e------------------------~~~~fi~vs~s---~L~sk~vGesek~ir~lF~~Ar~  300 (467)
T 4b4t_H          248 LYGPPGTGKTLCARAVANR------------------------TDATFIRVIGS---ELVQKYVGEGARMVRELFEMART  300 (467)
T ss_dssp             ECSCTTSSHHHHHHHHHHH------------------------HTCEEEEEEGG---GGCCCSSSHHHHHHHHHHHHHHH
T ss_pred             eeCCCCCcHHHHHHHHHhc------------------------cCCCeEEEEhH---HhhcccCCHHHHHHHHHHHHHHh
Confidence            3799999999999999653                        23355667777   777655433 2333333333333


Q ss_pred             cCCCCeEEEEEEeCC----CCCCH------H-HHHHHHHHHHhhccccCCeEEEEEe
Q 044972           81 AKDGIHAVLIVFSVR----NRFSE------E-EGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        81 s~pGpha~LLVl~~~----~RfT~------e-e~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ..  | +|||+-.++    .|...      . .......|..+=|-.....++|+.|
T Consensus       301 ~a--P-~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaA  354 (467)
T 4b4t_H          301 KK--A-CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA  354 (467)
T ss_dssp             TC--S-EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEE
T ss_pred             cC--C-ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeC
Confidence            22  3 455655543    13221      1 1223344555546566667776655

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=91.87  E-value=0.52  Score=43.00  Aligned_cols=18  Identities=17%  Similarity=-0.145  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+||+|||++.+.|...
T Consensus        50 ~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           50 YGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CBCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999998753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.85  E-value=0.1  Score=48.13  Aligned_cols=43  Identities=12%  Similarity=-0.039  Sum_probs=29.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|+.||||||+++.|.|--.-.             .+...+ +|+--.|-..|   .+|+
T Consensus        70 ~G~NGsGKSTLlk~l~Gl~~p~-------------~G~I~~-~g~i~~v~Q~~---~l~~  112 (290)
T 2bbs_A           70 AGSTGAGKTSLLMMIMGELEPS-------------EGKIKH-SGRISFCSQNS---WIMP  112 (290)
T ss_dssp             EESTTSSHHHHHHHHTTSSCEE-------------EEEEEC-CSCEEEECSSC---CCCS
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-------------CcEEEE-CCEEEEEeCCC---ccCc
Confidence            5999999999999999964221             234455 67544555666   6654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=91.81  E-value=0.37  Score=38.87  Aligned_cols=17  Identities=6%  Similarity=-0.365  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++..|-.
T Consensus        30 ~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           30 YGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998843

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=91.70  E-value=0.05  Score=48.05  Aligned_cols=18  Identities=11%  Similarity=-0.086  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        31 ~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           31 SGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=91.69  E-value=0.66  Score=44.07  Aligned_cols=17  Identities=12%  Similarity=-0.208  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+||||++..|++
T Consensus        67 ~GppGsGKSTLal~la~   83 (356)
T 3hr8_A           67 FGQESSGKTTLALHAIA   83 (356)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.68  E-value=0.057  Score=46.00  Aligned_cols=18  Identities=11%  Similarity=-0.147  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.+.
T Consensus        27 ~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           27 SGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EESTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            699999999999999886

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.65  E-value=0.81  Score=44.88  Aligned_cols=63  Identities=10%  Similarity=0.006  Sum_probs=37.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH-HHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF-EFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~-~~i~~eI~kcv~ls   81 (307)
                      .||||+|||+++.+|.+.                        -|.++..|+.|   .|.+..... +...+.+-......
T Consensus       222 yGPPGTGKTlLAkAiA~e------------------------~~~~fi~v~~s---~l~sk~vGesek~ir~lF~~Ar~~  274 (437)
T 4b4t_I          222 YGAPGTGKTLLAKAVANQ------------------------TSATFLRIVGS---ELIQKYLGDGPRLCRQIFKVAGEN  274 (437)
T ss_dssp             ESSTTTTHHHHHHHHHHH------------------------HTCEEEEEESG---GGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred             ECCCCchHHHHHHHHHHH------------------------hCCCEEEEEHH---HhhhccCchHHHHHHHHHHHHHhc
Confidence            699999999999999653                        23355667777   776655433 23334433333333


Q ss_pred             CCCCeEEEEEEeCC
Q 044972           82 KDGIHAVLIVFSVR   95 (307)
Q Consensus        82 ~pGpha~LLVl~~~   95 (307)
                      +  | +|||+-.++
T Consensus       275 a--P-~IIfiDEiD  285 (437)
T 4b4t_I          275 A--P-SIVFIDEID  285 (437)
T ss_dssp             C--S-EEEEEEEES
T ss_pred             C--C-cEEEEehhh
Confidence            3  2 566665543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.63  E-value=0.46  Score=42.44  Aligned_cols=17  Identities=6%  Similarity=-0.316  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++..|.+
T Consensus        60 ~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           60 FGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             ESSSSSCHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHH
Confidence            59999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=91.61  E-value=0.052  Score=46.12  Aligned_cols=17  Identities=12%  Similarity=-0.220  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++|+||||+++.|+|
T Consensus        29 ~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           29 TGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999999984

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.60  E-value=0.065  Score=51.40  Aligned_cols=19  Identities=5%  Similarity=-0.424  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|-.
T Consensus        60 iGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           60 IGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHhcCC
Confidence            6999999999999999965

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=91.58  E-value=0.021  Score=49.58  Aligned_cols=48  Identities=10%  Similarity=0.032  Sum_probs=29.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC--ccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972            3 ACEYIKICTTTGNSILGRR--AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP   55 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP   55 (307)
                      +||+||||||+.+.++...  .|...   .|.|+.. ...++. +|....+|+-.
T Consensus         7 ~GPSG~GK~Tl~~~L~~~~~~~~~~s---vs~TTR~-pR~gE~-~G~dY~Fvs~~   56 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLFAEYPDSFGFS---VSSTTRT-PRAGEV-NGKDYNFVSVD   56 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTTTEEEC---CCEECSC-CCTTCC-BTTTBEECCHH
T ss_pred             ECCCCCCHHHHHHHHHHhCCCCeEEE---EEEeccC-CCCCCc-CCceeEeecHH
Confidence            6999999999999998653  35332   2333322 122345 67666665543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.43  E-value=0.069  Score=51.47  Aligned_cols=19  Identities=16%  Similarity=-0.244  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|||||||++.|.|-.
T Consensus        35 lGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           35 VGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHHcCC
Confidence            6999999999999999975

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=91.41  E-value=0.065  Score=47.76  Aligned_cols=20  Identities=10%  Similarity=-0.213  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHH---CCCc
Q 044972            3 ACEYIKICTTTGNSIL---GRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~~~   22 (307)
                      +|++||||||+++.|.   |-..
T Consensus        33 ~G~~GsGKSTl~k~La~~Lg~~~   55 (252)
T 4e22_A           33 DGPSGAGKGTLCKALAESLNWRL   55 (252)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCEE
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCc
Confidence            6999999999999998   7643

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=91.38  E-value=0.073  Score=44.64  Aligned_cols=17  Identities=6%  Similarity=-0.265  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|++|+|||++...+..
T Consensus        51 ~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           51 SGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=91.34  E-value=0.07  Score=50.85  Aligned_cols=19  Identities=21%  Similarity=-0.199  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|++||||||+++.|.|-.
T Consensus        47 lGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           47 LGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999975

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=91.18  E-value=0.074  Score=43.96  Aligned_cols=16  Identities=13%  Similarity=-0.195  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|++||||||+++.|.
T Consensus         9 ~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            9 TGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999883

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.14  E-value=0.075  Score=50.68  Aligned_cols=19  Identities=21%  Similarity=-0.303  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|++||||||+++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHHCCC
Confidence            5999999999999999964

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=91.13  E-value=0.72  Score=41.75  Aligned_cols=87  Identities=13%  Similarity=0.147  Sum_probs=46.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh-c
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM-A   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l-s   81 (307)
                      .|+||+|||++...|...-                        |..+.-++..   ..     ....+...+...... .
T Consensus        54 ~G~~G~GKT~la~~la~~l------------------------~~~~~~i~~~---~~-----~~~~i~~~~~~~~~~~~  101 (324)
T 3u61_B           54 SPSPGTGKTTVAKALCHDV------------------------NADMMFVNGS---DC-----KIDFVRGPLTNFASAAS  101 (324)
T ss_dssp             CSSTTSSHHHHHHHHHHHT------------------------TEEEEEEETT---TC-----CHHHHHTHHHHHHHBCC
T ss_pred             eCcCCCCHHHHHHHHHHHh------------------------CCCEEEEccc---cc-----CHHHHHHHHHHHHhhcc
Confidence            5889999999999884321                        1123334433   21     133444334433322 1


Q ss_pred             CCCCeEEEEEEeCCCCCC-HHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           82 KDGIHAVLIVFSVRNRFS-EEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT-~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ..|...+|++-.++ .++ .+....+..+.+.+.    .+++|++|
T Consensus       102 ~~~~~~vliiDEi~-~l~~~~~~~~L~~~le~~~----~~~~iI~~  142 (324)
T 3u61_B          102 FDGRQKVIVIDEFD-RSGLAESQRHLRSFMEAYS----SNCSIIIT  142 (324)
T ss_dssp             CSSCEEEEEEESCC-CGGGHHHHHHHHHHHHHHG----GGCEEEEE
T ss_pred             cCCCCeEEEEECCc-ccCcHHHHHHHHHHHHhCC----CCcEEEEE
Confidence            22456677777787 888 666655555444332    34455554

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.13  E-value=0.077  Score=50.67  Aligned_cols=19  Identities=16%  Similarity=-0.237  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|++||||||+++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCchHHHHHHHHhcCC
Confidence            5999999999999999975

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=91.12  E-value=0.029  Score=47.78  Aligned_cols=18  Identities=11%  Similarity=-0.258  Sum_probs=16.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|+|.
T Consensus         8 vG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            8 VGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EESCHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999985

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=91.09  E-value=0.073  Score=44.63  Aligned_cols=19  Identities=16%  Similarity=-0.109  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|+.|+||||+.+.|.|--
T Consensus        39 ~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           39 NGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=91.06  E-value=0.054  Score=45.85  Aligned_cols=17  Identities=6%  Similarity=-0.271  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|.+
T Consensus         7 ~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            7 TGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            69999999999999976

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=91.06  E-value=0.62  Score=42.95  Aligned_cols=17  Identities=0%  Similarity=-0.351  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++..|..
T Consensus        51 ~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           51 FGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             ESSSSSCHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            59999999999998865

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=91.04  E-value=0.064  Score=45.47  Aligned_cols=17  Identities=12%  Similarity=-0.087  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|.+
T Consensus        24 ~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           24 MGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998843

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=91.00  E-value=0.067  Score=51.13  Aligned_cols=19  Identities=16%  Similarity=-0.246  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .||+||||||+++.|.|-.
T Consensus        36 lGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EESTTSSHHHHHHHHHTSS
T ss_pred             ECCCCchHHHHHHHHhcCC
Confidence            5999999999999999965

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.98  E-value=0.08  Score=50.69  Aligned_cols=19  Identities=26%  Similarity=-0.183  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|++||||||+++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           35 LGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             ECCCCcHHHHHHHHHHcCC
Confidence            5999999999999999975

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=90.86  E-value=0.07  Score=45.57  Aligned_cols=18  Identities=17%  Similarity=-0.208  Sum_probs=16.7

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||++|.|++.
T Consensus        12 ~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A           12 AAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHh
Confidence            699999999999999975

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=90.76  E-value=0.098  Score=43.36  Aligned_cols=16  Identities=6%  Similarity=-0.305  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|++||||||+++.|.
T Consensus        10 ~G~~GsGKST~~~~La   25 (186)
T 3cm0_A           10 LGPPGAGKGTQASRLA   25 (186)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999885

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=90.74  E-value=0.061  Score=44.67  Aligned_cols=17  Identities=18%  Similarity=-0.015  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++|+||||++.+|.+
T Consensus        32 ~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           32 VGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=90.71  E-value=0.072  Score=45.15  Aligned_cols=17  Identities=18%  Similarity=-0.250  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+||+||||+++.|++
T Consensus        26 ~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           26 YGPYASGKTTLALQTGL   42 (220)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999987

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.70  E-value=0.76  Score=44.79  Aligned_cols=37  Identities=3%  Similarity=-0.173  Sum_probs=27.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      .||||+|||+++.+|.+.                        -|.++..|+.|   .+.+....
T Consensus       212 ~GPPGtGKT~lakAiA~~------------------------~~~~~~~v~~~---~l~~~~~G  248 (428)
T 4b4t_K          212 YGPPGTGKTMLVKAVANS------------------------TKAAFIRVNGS---EFVHKYLG  248 (428)
T ss_dssp             ESCTTTTHHHHHHHHHHH------------------------HTCEEEEEEGG---GTCCSSCS
T ss_pred             ECCCCCCHHHHHHHHHHH------------------------hCCCeEEEecc---hhhccccc
Confidence            699999999999998652                        23456677778   77765543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.64  E-value=0.96  Score=43.87  Aligned_cols=17  Identities=6%  Similarity=-0.334  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+|||.++.+|.+
T Consensus       188 ~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          188 YGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             ESCSSSSHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHH
Confidence            69999999999999965

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=90.62  E-value=0.069  Score=50.72  Aligned_cols=19  Identities=16%  Similarity=-0.305  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|++||||||+++.|.|-.
T Consensus        32 lGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           32 LGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             ECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCccHHHHHHHHHcCC
Confidence            5999999999999999974

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=90.59  E-value=0.089  Score=43.68  Aligned_cols=16  Identities=13%  Similarity=-0.095  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|++||||||+++.|.
T Consensus        11 ~G~~GsGKst~a~~La   26 (185)
T 3trf_A           11 IGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999883

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=90.56  E-value=0.069  Score=50.18  Aligned_cols=18  Identities=6%  Similarity=-0.270  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus       176 vG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          176 LGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             ECCTTSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999985

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=90.55  E-value=0.091  Score=44.67  Aligned_cols=17  Identities=18%  Similarity=-0.105  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||++..|.+
T Consensus        31 ~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=90.48  E-value=0.064  Score=48.47  Aligned_cols=18  Identities=6%  Similarity=-0.407  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||+||||+++.|.|.
T Consensus        41 ~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           41 TSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            699999999999988764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=90.44  E-value=0.077  Score=44.09  Aligned_cols=16  Identities=13%  Similarity=-0.093  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|.|||||||+++.|.
T Consensus        11 ~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A           11 TGHPATGKTTLSQALA   26 (193)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999883

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=90.43  E-value=0.066  Score=49.32  Aligned_cols=18  Identities=17%  Similarity=-0.080  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        86 ~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           86 AGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999884

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.36  E-value=0.11  Score=49.71  Aligned_cols=19  Identities=26%  Similarity=-0.183  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .|++||||||+++.|.|-.
T Consensus        43 lGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           43 LGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            5999999999999999975

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=90.34  E-value=0.083  Score=50.94  Aligned_cols=19  Identities=11%  Similarity=-0.286  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|-.
T Consensus        53 lGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           53 LGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EESTTSSHHHHHHHHHTCS
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            5999999999999999964

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=90.31  E-value=0.099  Score=43.67  Aligned_cols=17  Identities=12%  Similarity=-0.255  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|.+||||||+++.|..
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            6 FGTVGAGKSTISAEISK   22 (205)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHH
Confidence            69999999999998854

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=90.30  E-value=0.07  Score=45.63  Aligned_cols=17  Identities=18%  Similarity=-0.167  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|.+
T Consensus        28 ~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           28 DGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999976

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=90.26  E-value=0.051  Score=44.87  Aligned_cols=18  Identities=6%  Similarity=-0.322  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|++|+|||++++.|.|.
T Consensus        42 ~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           42 WGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             ESSSTTTTCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=90.00  E-value=0.11  Score=42.97  Aligned_cols=16  Identities=6%  Similarity=-0.255  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||++..|.
T Consensus        10 ~G~~GsGKsTla~~La   25 (175)
T 1via_A           10 IGFMGSGKSTLARALA   25 (175)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            6999999999999884

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=89.98  E-value=0.065  Score=50.90  Aligned_cols=19  Identities=21%  Similarity=-0.227  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|-.
T Consensus        37 lGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             ECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999975

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=89.92  E-value=0.093  Score=46.12  Aligned_cols=18  Identities=11%  Similarity=-0.132  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+||+|||++++.|.|.
T Consensus        55 ~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           55 VGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=89.91  E-value=0.094  Score=45.14  Aligned_cols=18  Identities=11%  Similarity=-0.080  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++|+||||++..|+|.
T Consensus        30 ~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           30 FGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            699999999999999983

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=89.89  E-value=0.11  Score=42.96  Aligned_cols=17  Identities=6%  Similarity=-0.410  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|.+||||||+++.|..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998843

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=89.84  E-value=0.14  Score=41.87  Aligned_cols=21  Identities=5%  Similarity=-0.148  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHH---HCCCcc
Q 044972            3 ACEYIKICTTTGNSI---LGRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsI---LG~~~F   23 (307)
                      .|.+||||||++..|   ||-..+
T Consensus        13 ~G~~GsGKSTva~~La~~lg~~~i   36 (168)
T 1zuh_A           13 IGFMGSGKSSLAQELGLALKLEVL   36 (168)
T ss_dssp             ESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCEE
Confidence            599999999999987   555433

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=89.81  E-value=0.63  Score=43.90  Aligned_cols=16  Identities=6%  Similarity=-0.323  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|++||||||+++.|.
T Consensus        29 ~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           29 EGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999986

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=89.81  E-value=0.11  Score=43.58  Aligned_cols=17  Identities=12%  Similarity=-0.185  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|.+||||||+++.|..
T Consensus        16 ~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998743

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=89.80  E-value=0.098  Score=44.69  Aligned_cols=18  Identities=6%  Similarity=-0.232  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|.+||||||++|.+++.
T Consensus        44 vG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           44 MGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            699999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=89.76  E-value=0.11  Score=46.35  Aligned_cols=17  Identities=12%  Similarity=-0.257  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+|||||||+++.|.+
T Consensus         7 ~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            7 YGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999998854

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=89.74  E-value=0.12  Score=42.77  Aligned_cols=16  Identities=13%  Similarity=-0.301  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.|||||||+++.|.
T Consensus         9 ~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            9 LGGPGAGKGTQCARIV   24 (196)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999773

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=89.68  E-value=0.46  Score=42.49  Aligned_cols=17  Identities=18%  Similarity=-0.091  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|..
T Consensus        73 ~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           73 TGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999986643

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=89.52  E-value=0.069  Score=47.68  Aligned_cols=19  Identities=11%  Similarity=-0.218  Sum_probs=17.1

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +||+||||||+++.|.|--
T Consensus        33 ~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           33 SGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HSCCSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            5999999999999999853

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=89.34  E-value=0.13  Score=41.98  Aligned_cols=15  Identities=20%  Similarity=-0.031  Sum_probs=13.9

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      .|.+||||||+++.|
T Consensus         8 ~G~~GsGKsT~a~~L   22 (173)
T 1e6c_A            8 VGARGCGMTTVGREL   22 (173)
T ss_dssp             ESCTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999987

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=89.29  E-value=0.14  Score=41.39  Aligned_cols=18  Identities=17%  Similarity=-0.182  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||+|||++++.|...
T Consensus        49 ~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           49 IGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999988653

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=89.28  E-value=0.85  Score=42.88  Aligned_cols=16  Identities=6%  Similarity=-0.288  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+||+|||+++..|.
T Consensus       154 ~GppGtGKT~la~aia  169 (389)
T 3vfd_A          154 FGPPGNGKTMLAKAVA  169 (389)
T ss_dssp             ESSTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999984

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=89.27  E-value=0.11  Score=48.81  Aligned_cols=18  Identities=17%  Similarity=-0.091  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.|.
T Consensus        98 ~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           98 AGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999988663

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=89.27  E-value=0.11  Score=47.20  Aligned_cols=18  Identities=11%  Similarity=-0.234  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+||+|||++++.|.|.
T Consensus        50 ~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           50 AGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             ESSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            699999999999999874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=89.22  E-value=0.13  Score=42.63  Aligned_cols=20  Identities=20%  Similarity=-0.001  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHH---HCCCc
Q 044972            3 ACEYIKICTTTGNSI---LGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsI---LG~~~   22 (307)
                      .|.|||||||++..|   ||-..
T Consensus         8 ~G~~GsGKsT~a~~La~~lg~~~   30 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLAKALGVGL   30 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHHHTCCE
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCE
Confidence            699999999999887   45443

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=89.21  E-value=0.11  Score=52.20  Aligned_cols=19  Identities=11%  Similarity=-0.272  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus       375 vG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          375 VGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EECTTSSHHHHHHHHTTTT
T ss_pred             ECCCCCCHHHHHHHHhhcc
Confidence            6999999999999999964

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=89.19  E-value=0.62  Score=44.05  Aligned_cols=83  Identities=11%  Similarity=0.135  Sum_probs=53.2

Q ss_pred             CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCC---------HHHH
Q 044972           33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFS---------EEEG  103 (307)
Q Consensus        33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT---------~ee~  103 (307)
                      |.........+ ++..+.++||+   |-..-           ......+..+.|+||||+++. .+.         ..=.
T Consensus       180 T~Gi~~~~~~~-~~~~l~iwDt~---GQe~~-----------r~~w~~yf~~a~~iIfV~dls-~~d~~l~ed~~~nr~~  243 (353)
T 1cip_A          180 TTGIVETHFTF-KDLHFKMFDVG---GQRSE-----------RKKWIHCFEGVTAIIFCVALS-DYDLVLAEDEEMNRMH  243 (353)
T ss_dssp             CCSEEEEEEEE-TTEEEEEEEEC---CSGGG-----------GGGGGGGCTTCSEEEEEEEGG-GGGCEETTEEEEEHHH
T ss_pred             eeceEEEEEee-CCeeEEEEeCC---Cchhh-----------hHHHHHHHhcCCEEEEEEECc-cccccccccchhhhHH
Confidence            44444455667 88999999999   84321           111234678999999999987 432         2223


Q ss_pred             HHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972          104 AAIHSLESLFGKKV--FDYMIVVFTRGDEL  131 (307)
Q Consensus       104 ~~l~~i~~~FG~~~--~~~~IVLfT~~D~L  131 (307)
                      ..+.++..+.....  --.+||++|+.|.+
T Consensus       244 e~~~~~~~i~~~~~~~~~piiLv~NK~DL~  273 (353)
T 1cip_A          244 ESMKLFDSICNNKWFTDTSIILFLNKKDLF  273 (353)
T ss_dssp             HHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHHHHHHHHHcCccccCCcEEEEEECcCch
Confidence            45566666655432  24688888888864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=89.07  E-value=0.16  Score=42.62  Aligned_cols=16  Identities=0%  Similarity=-0.342  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        10 ~G~~GsGKsT~~~~L~   25 (213)
T 2plr_A           10 EGIDGSGKSSQATLLK   25 (213)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            5999999999999884

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=89.06  E-value=0.12  Score=47.66  Aligned_cols=18  Identities=11%  Similarity=-0.186  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|.+.
T Consensus        37 ~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           37 SGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999998764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=89.05  E-value=0.11  Score=48.11  Aligned_cols=18  Identities=22%  Similarity=-0.180  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+||+||||+++.|.|.
T Consensus        57 ~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           57 AGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             ESSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            599999999999999874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=89.04  E-value=0.16  Score=43.32  Aligned_cols=16  Identities=13%  Similarity=-0.226  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||+++.|.
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQII   21 (216)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999883

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=89.02  E-value=0.12  Score=43.04  Aligned_cols=16  Identities=13%  Similarity=-0.232  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        15 ~G~~GsGKsT~~~~La   30 (196)
T 2c95_A           15 VGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999873

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=88.92  E-value=0.098  Score=52.75  Aligned_cols=19  Identities=16%  Similarity=-0.235  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus       387 vG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          387 VGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             ECCTTSSTTHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCc
Confidence            6999999999999999964

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=88.69  E-value=0.17  Score=41.76  Aligned_cols=16  Identities=13%  Similarity=-0.205  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus         6 ~G~~GsGKsT~~~~L~   21 (195)
T 2pbr_A            6 EGIDGSGKTTQAKKLY   21 (195)
T ss_dssp             ECSTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.55  E-value=0.15  Score=51.07  Aligned_cols=19  Identities=16%  Similarity=-0.191  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|.-
T Consensus        31 iGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           31 LGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999964

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=88.49  E-value=0.14  Score=46.84  Aligned_cols=18  Identities=11%  Similarity=-0.130  Sum_probs=15.8

Q ss_pred             CCCCCCCcHHHHHHHHHC
Q 044972            2 CACEYIKICTTTGNSILG   19 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG   19 (307)
                      .+|+|||||||+++.|+.
T Consensus        38 l~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           38 LGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EECCTTSCTHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            369999999999999963

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=88.49  E-value=0.13  Score=42.94  Aligned_cols=18  Identities=6%  Similarity=-0.208  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++||||||+++.|...
T Consensus        14 ~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           14 TGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EECTTSCHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHC
Confidence            699999999999988754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=88.46  E-value=0.11  Score=52.42  Aligned_cols=19  Identities=21%  Similarity=-0.281  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||++|.|+|--
T Consensus       375 vG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          375 LGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             ECSSSSSHHHHHHTTTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999964

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=88.46  E-value=0.16  Score=42.03  Aligned_cols=16  Identities=19%  Similarity=-0.105  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        17 ~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           17 TGTPGVGKTTLGKELA   32 (180)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            6999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=88.42  E-value=0.085  Score=48.84  Aligned_cols=19  Identities=21%  Similarity=-0.134  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||++|.|+|..
T Consensus        10 ~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A           10 TGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EESSSSSCHHHHHHHHHSC
T ss_pred             EecCCCCHHHHHHHHHhhc
Confidence            5999999999999999764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=88.38  E-value=0.17  Score=50.61  Aligned_cols=20  Identities=10%  Similarity=-0.139  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.||||||+++.|.|.-.
T Consensus        53 vG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           53 VGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=88.31  E-value=0.14  Score=45.80  Aligned_cols=18  Identities=11%  Similarity=-0.132  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+||+|||++++.|.|.
T Consensus        79 ~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           79 VGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCcChHHHHHHHHHHH
Confidence            699999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=88.31  E-value=0.14  Score=42.25  Aligned_cols=16  Identities=13%  Similarity=-0.267  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        12 ~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A           12 LGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999883

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=88.24  E-value=0.2  Score=42.03  Aligned_cols=17  Identities=18%  Similarity=-0.177  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|.+||||||+++.|..
T Consensus        10 ~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999998854

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=88.23  E-value=0.2  Score=40.75  Aligned_cols=15  Identities=13%  Similarity=-0.064  Sum_probs=13.9

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      .|.+||||||+++.|
T Consensus         6 ~G~~GsGKsT~a~~L   20 (168)
T 2pt5_A            6 IGFMCSGKSTVGSLL   20 (168)
T ss_dssp             ESCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999987

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=88.20  E-value=0.2  Score=41.49  Aligned_cols=17  Identities=12%  Similarity=-0.287  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|.+||||||+++.|.+
T Consensus        11 ~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A           11 TGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=88.17  E-value=0.19  Score=42.81  Aligned_cols=16  Identities=19%  Similarity=-0.128  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||+++.|.
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIV   21 (216)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999884

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=88.10  E-value=0.11  Score=42.72  Aligned_cols=16  Identities=13%  Similarity=-0.047  Sum_probs=10.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        11 ~G~~GsGKST~a~~La   26 (183)
T 2vli_A           11 NGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             ECCC----CHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=88.07  E-value=0.28  Score=46.60  Aligned_cols=68  Identities=4%  Similarity=-0.191  Sum_probs=38.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC--ccccccCCC-----C-CCceeEEEEEEEeCCeEEEEEeCCCCCCC-CCCCcCHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRR--AFKSKVGSS-----E-DTKTCEMQRTMLKDGQVVNVIDTPAIARL-FDSSADFEFVSKE   73 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~-----s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl-~Dt~~~~~~i~~e   73 (307)
                      +|+||||||+++..|..+-  .|.+..+..     + .|....  ..+. .|.+..+||..   .+ ++. .+.....+.
T Consensus        46 ~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~-~gvphhlidi~---~~~~e~-~s~~~F~~~  118 (339)
T 3a8t_A           46 MGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDR-GGVPHHLLGEV---DPARGE-LTPADFRSL  118 (339)
T ss_dssp             ECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGG-TTCCEESSSCB---CGGGCC-CCHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHH-cCCCEeecccc---CcccCc-cCHHHHHHH
Confidence            6999999999999997652  233322221     1 122111  1123 77788888888   66 443 344444443


Q ss_pred             HHHH
Q 044972           74 IVKC   77 (307)
Q Consensus        74 I~kc   77 (307)
                      ...+
T Consensus       119 a~~~  122 (339)
T 3a8t_A          119 AGKA  122 (339)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=88.01  E-value=0.18  Score=43.18  Aligned_cols=16  Identities=13%  Similarity=-0.110  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|.+||||||+++.|-
T Consensus        10 ~G~~GSGKST~~~~L~   25 (218)
T 1vht_A           10 TGGIGSGKSTVANAFA   25 (218)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999885

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=88.00  E-value=0.15  Score=42.48  Aligned_cols=16  Identities=6%  Similarity=-0.276  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.|||||||+++.|.
T Consensus        18 ~G~~GsGKsT~a~~L~   33 (199)
T 2bwj_A           18 IGGPGSGKGTQCEKLV   33 (199)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999883

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=87.95  E-value=0.18  Score=41.98  Aligned_cols=18  Identities=11%  Similarity=-0.261  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|.+||||||+++.|.+.
T Consensus        19 ~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           19 TGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            599999999999988653

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=87.93  E-value=2.4  Score=39.54  Aligned_cols=18  Identities=6%  Similarity=-0.130  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+||+|||++.+.++..
T Consensus        51 ~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           51 TNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             ECCCSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=87.89  E-value=0.18  Score=44.97  Aligned_cols=16  Identities=6%  Similarity=-0.315  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|.|||||||+++.|.
T Consensus        10 ~G~pGSGKSTla~~La   25 (260)
T 3a4m_A           10 TGLPGVGKSTFSKNLA   25 (260)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            6999999999999884

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=87.79  E-value=0.19  Score=42.45  Aligned_cols=16  Identities=6%  Similarity=-0.363  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.|||||||+++.|.
T Consensus        26 ~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           26 LGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999873

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=87.76  E-value=0.14  Score=44.72  Aligned_cols=18  Identities=17%  Similarity=-0.291  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+.||||||+++.|.|.
T Consensus        26 ~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           26 EGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             ECSTTSCHHHHHHTTGGG
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.76  E-value=1.1  Score=43.81  Aligned_cols=18  Identities=6%  Similarity=-0.330  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .||||+|||+++.+|.+.
T Consensus       221 yGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          221 YGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             ESCTTSSHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHH
Confidence            699999999999998653

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=87.74  E-value=0.2  Score=45.92  Aligned_cols=17  Identities=6%  Similarity=-0.265  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|++|+|||++...+..
T Consensus        44 ~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           44 SGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999987753

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=87.56  E-value=0.17  Score=50.52  Aligned_cols=19  Identities=11%  Similarity=-0.125  Sum_probs=17.0

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      ++|.||||||+++|+|+..
T Consensus       172 IaG~TGSGKSt~L~~li~s  190 (512)
T 2ius_A          172 VAGTTGSGASVGVNAMILS  190 (512)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            4799999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=87.36  E-value=0.19  Score=42.33  Aligned_cols=16  Identities=6%  Similarity=-0.195  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        16 ~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A           16 EGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            5899999999999884

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=87.24  E-value=0.3  Score=46.23  Aligned_cols=106  Identities=10%  Similarity=0.027  Sum_probs=45.7

Q ss_pred             CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972           33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL  112 (307)
Q Consensus        33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~  112 (307)
                      +.-|++...-+ ....+..||+|           .+...+-+    .....+.+++|+|+++. .|..   ..+..+...
T Consensus        36 ~~~C~RC~~l~-hy~~~~~v~~~-----------~e~f~~~L----~~~~~~~~lil~VvD~~-d~~~---s~~~~l~~~   95 (369)
T 3ec1_A           36 EVICQRCFRLK-HYNEVQDVPLD-----------DDDFLSML----HRIGESKALVVNIVDIF-DFNG---SFIPGLPRF   95 (369)
T ss_dssp             -----------------------------------CHHHHHH----HHHHHHCCEEEEEEETT-CSGG---GCCSSHHHH
T ss_pred             CEEchhHHHhh-ccccccCCcCC-----------HHHHHHHH----HHhhccCcEEEEEEECC-CCCC---chhhHHHHH
Confidence            45677766555 66666767766           12222211    12234688999999997 5542   223334555


Q ss_pred             hccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC---eEEEEcCC
Q 044972          113 FGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN---RRVLFDNK  167 (307)
Q Consensus       113 FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~---R~~~fnNk  167 (307)
                      +|   -+.+|||+|+.|.+..  ....+.+.    ..++...+.+|.   .++..+-+
T Consensus        96 l~---~~piilV~NK~DLl~~--~~~~~~~~----~~l~~~~~~~g~~~~~v~~iSA~  144 (369)
T 3ec1_A           96 AA---DNPILLVGNKADLLPR--SVKYPKLL----RWMRRMAEELGLCPVDVCLVSAA  144 (369)
T ss_dssp             CT---TSCEEEEEECGGGSCT--TCCHHHHH----HHHHHHHHTTTCCCSEEEECBTT
T ss_pred             hC---CCCEEEEEEChhcCCC--ccCHHHHH----HHHHHHHHHcCCCcccEEEEECC
Confidence            55   4689999999998865  21112222    134555666675   34444443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=87.02  E-value=0.15  Score=45.64  Aligned_cols=17  Identities=0%  Similarity=-0.332  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++|+||||++..|+|
T Consensus        36 ~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           36 VSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999999986

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=87.00  E-value=0.26  Score=50.15  Aligned_cols=21  Identities=10%  Similarity=-0.154  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCcc
Q 044972            3 ACEYIKICTTTGNSILGRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F   23 (307)
                      +|+.|+||||++|.|.|.-..
T Consensus       109 vGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          109 VGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCC
T ss_pred             ECCCCChHHHHHHHHhcCCCC
Confidence            699999999999999997543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=86.96  E-value=0.18  Score=49.98  Aligned_cols=19  Identities=11%  Similarity=-0.230  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|-.
T Consensus        35 iG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           35 SGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999853

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=86.93  E-value=1.5  Score=41.54  Aligned_cols=16  Identities=19%  Similarity=-0.195  Sum_probs=13.9

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|+||+|||+++-.|+
T Consensus        80 ~G~pGsGKTtlal~la   95 (366)
T 1xp8_A           80 YGPESGGKTTLALAIV   95 (366)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCChHHHHHHHH
Confidence            6999999999997665

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=86.92  E-value=0.19  Score=42.45  Aligned_cols=16  Identities=6%  Similarity=-0.151  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        15 ~G~~GsGKsT~~~~L~   30 (215)
T 1nn5_A           15 EGVDRAGKSTQSRKLV   30 (215)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999885

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=86.92  E-value=0.21  Score=50.71  Aligned_cols=20  Identities=15%  Similarity=-0.122  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.|+||||+++.|.|.-.
T Consensus       123 iG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          123 VGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCChHHHHHHHHhCCCC
Confidence            69999999999999999653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=86.88  E-value=0.26  Score=42.28  Aligned_cols=16  Identities=6%  Similarity=-0.319  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.|||||||+++.|.
T Consensus        10 ~G~~GsGKsT~a~~La   25 (220)
T 1aky_A           10 IGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999873

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=86.83  E-value=0.25  Score=40.61  Aligned_cols=16  Identities=13%  Similarity=-0.114  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|++|+||||++.+|.
T Consensus        29 ~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           29 IGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999874

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=86.80  E-value=0.23  Score=41.64  Aligned_cols=16  Identities=0%  Similarity=-0.147  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|++||||||+++.|.
T Consensus         8 ~G~~GsGKst~~~~la   23 (208)
T 3ake_A            8 DGPSASGKSSVARRVA   23 (208)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999883

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=86.78  E-value=0.23  Score=42.82  Aligned_cols=21  Identities=10%  Similarity=-0.061  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHH---CCCcc
Q 044972            3 ACEYIKICTTTGNSIL---GRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~~~F   23 (307)
                      +|.+||||||+++.+-   |-.++
T Consensus        18 tG~~GSGKSTva~~L~~~lg~~vi   41 (192)
T 2grj_A           18 TGKIGTGKSTVCEILKNKYGAHVV   41 (192)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             ECCCCCCHHHHHHHHHHhcCCEEE
Confidence            5999999999999873   54443

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=86.74  E-value=0.17  Score=47.69  Aligned_cols=19  Identities=16%  Similarity=-0.122  Sum_probs=16.9

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      ++|+||+|||++.+.|++.
T Consensus        40 i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           40 ILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHH
Confidence            4799999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=86.70  E-value=0.28  Score=41.27  Aligned_cols=16  Identities=6%  Similarity=-0.294  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        21 ~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           21 LGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999885

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=86.36  E-value=0.26  Score=41.75  Aligned_cols=17  Identities=6%  Similarity=-0.369  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|..
T Consensus        58 ~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           58 WGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=86.36  E-value=0.2  Score=47.93  Aligned_cols=17  Identities=18%  Similarity=-0.068  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++|+||||+++.|.|
T Consensus       175 ~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          175 KGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            69999999999999987

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=86.36  E-value=0.24  Score=42.81  Aligned_cols=16  Identities=13%  Similarity=-0.253  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.|||||||+++.|.
T Consensus        13 ~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A           13 MGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999885

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=86.35  E-value=0.15  Score=45.28  Aligned_cols=17  Identities=12%  Similarity=-0.333  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+|||||||+++.|..
T Consensus        38 ~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           38 GGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             ESCGGGTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998854

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=86.22  E-value=1.5  Score=45.79  Aligned_cols=18  Identities=6%  Similarity=-0.352  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .||.|+||||++++|.|-
T Consensus       582 ~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          582 TGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             ESCSSSSHHHHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHHhh
Confidence            599999999999999884

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=86.17  E-value=0.24  Score=42.53  Aligned_cols=16  Identities=13%  Similarity=-0.244  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|++||||||+++.|.
T Consensus        11 ~G~~GsGKsT~~~~La   26 (222)
T 1zak_A           11 SGAPASGKGTQCELIK   26 (222)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999884

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=86.13  E-value=0.18  Score=49.53  Aligned_cols=19  Identities=5%  Similarity=-0.164  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus       144 vGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          144 VGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             EESTTSSHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhCcc
Confidence            6999999999999999864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=85.96  E-value=0.23  Score=44.80  Aligned_cols=17  Identities=18%  Similarity=-0.093  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|.+
T Consensus        54 ~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998854

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=85.88  E-value=0.31  Score=42.23  Aligned_cols=16  Identities=19%  Similarity=-0.147  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||+++.|.
T Consensus         6 ~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999873

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=85.87  E-value=0.23  Score=43.56  Aligned_cols=17  Identities=18%  Similarity=-0.105  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++..|.+
T Consensus        51 ~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           51 VGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHH
Confidence            69999999999999975

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=85.72  E-value=0.25  Score=42.42  Aligned_cols=16  Identities=13%  Similarity=-0.215  Sum_probs=13.9

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|+||+|||+++..|+
T Consensus        29 ~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           29 SGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999987775

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=85.71  E-value=0.32  Score=48.66  Aligned_cols=20  Identities=15%  Similarity=-0.120  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.||||||+++.|.|-..
T Consensus       300 ~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          300 LGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=85.69  E-value=0.28  Score=44.03  Aligned_cols=17  Identities=6%  Similarity=-0.287  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|.|||||||+++.|.-
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            8 IGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=85.58  E-value=0.27  Score=42.05  Aligned_cols=16  Identities=13%  Similarity=-0.087  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||+++.|.
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999883

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=85.23  E-value=0.24  Score=40.18  Aligned_cols=17  Identities=6%  Similarity=-0.378  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|..
T Consensus        49 ~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           49 LGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             ESCGGGCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999988754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=85.10  E-value=2.8  Score=40.72  Aligned_cols=17  Identities=18%  Similarity=-0.291  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|..
T Consensus        56 ~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           56 WGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999999998864

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=85.08  E-value=2.3  Score=45.33  Aligned_cols=17  Identities=0%  Similarity=-0.273  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||.|+||||++++|.+
T Consensus       679 tGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          679 TGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             ESCCCHHHHHHHHHHHH
T ss_pred             ECCCCCchHHHHHHHHH
Confidence            59999999999998854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=85.00  E-value=0.14  Score=43.39  Aligned_cols=17  Identities=12%  Similarity=-0.249  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|..
T Consensus         6 ~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=84.97  E-value=0.31  Score=42.96  Aligned_cols=16  Identities=6%  Similarity=-0.101  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        28 ~G~~GSGKST~a~~L~   43 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIV   43 (252)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999873

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=84.83  E-value=1.3  Score=45.46  Aligned_cols=17  Identities=12%  Similarity=-0.228  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+||+|||++...|..
T Consensus       213 ~G~~GtGKT~la~~la~  229 (758)
T 1r6b_X          213 VGESGVGKTAIAEGLAW  229 (758)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999988875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=84.59  E-value=0.39  Score=41.04  Aligned_cols=18  Identities=6%  Similarity=-0.234  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|.+||||||+++.|.+.
T Consensus        31 ~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           31 TGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=84.54  E-value=3  Score=38.00  Aligned_cols=72  Identities=19%  Similarity=0.207  Sum_probs=43.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..++|||||   |....   +.....++.......  .|+.++||++.. . .   ..++..+. .|.+. ....-||
T Consensus       179 ~~~D~viiDtp---p~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~-~-~---~~~~~~~~-~~~~~-~~i~giv  243 (295)
T 1ls1_A          179 EARDLILVDTA---GRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM-T-G---QEALSVAR-AFDEK-VGVTGLV  243 (295)
T ss_dssp             HTCCEEEEECC---CCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG-G-T---HHHHHHHH-HHHHH-TCCCEEE
T ss_pred             CCCCEEEEeCC---CCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCC-C-c---HHHHHHHH-HHhhc-CCCCEEE
Confidence            45689999999   76543   234455555444333  477888999875 2 2   33444433 34433 4456678


Q ss_pred             EecCCCC
Q 044972          125 FTRGDEL  131 (307)
Q Consensus       125 fT~~D~L  131 (307)
                      +|+.|.-
T Consensus       244 lnk~d~~  250 (295)
T 1ls1_A          244 LTKLDGD  250 (295)
T ss_dssp             EECGGGC
T ss_pred             EECCCCC
Confidence            8987753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=84.51  E-value=0.42  Score=47.68  Aligned_cols=21  Identities=14%  Similarity=-0.250  Sum_probs=18.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCcc
Q 044972            3 ACEYIKICTTTGNSILGRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F   23 (307)
                      +|+.||||||+++.|.|-...
T Consensus       318 ~G~NGsGKSTLlk~l~Gl~~p  338 (538)
T 1yqt_A          318 VGPNGIGKTTFVKMLAGVEEP  338 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSSCC
T ss_pred             ECCCCCCHHHHHHHHhCCCCC
Confidence            699999999999999997543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=84.42  E-value=0.91  Score=43.85  Aligned_cols=17  Identities=0%  Similarity=-0.351  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++..|..
T Consensus       173 ~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          173 FGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998865

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=84.33  E-value=0.43  Score=40.08  Aligned_cols=17  Identities=12%  Similarity=-0.234  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++..|..
T Consensus        60 ~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           60 HGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=84.17  E-value=1.4  Score=41.03  Aligned_cols=17  Identities=18%  Similarity=-0.160  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++..|..
T Consensus       123 ~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          123 FGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=84.00  E-value=0.36  Score=41.51  Aligned_cols=20  Identities=15%  Similarity=-0.215  Sum_probs=16.4

Q ss_pred             CCCCCCcHHHHHHHH---HCCCc
Q 044972            3 ACEYIKICTTTGNSI---LGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsI---LG~~~   22 (307)
                      .|.|||||||+++.|   +|-..
T Consensus        11 ~G~~GsGKsT~a~~La~~l~~~~   33 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIKKEYGLAH   33 (217)
T ss_dssp             EECTTSSHHHHHHHHHHHHCCEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCceE
Confidence            599999999999988   56443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=83.95  E-value=0.43  Score=42.70  Aligned_cols=16  Identities=0%  Similarity=-0.226  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|++||||||+++.|.
T Consensus        15 ~G~~GsGKsTla~~la   30 (233)
T 3r20_A           15 DGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999885

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=83.88  E-value=0.98  Score=42.71  Aligned_cols=78  Identities=10%  Similarity=0.121  Sum_probs=34.9

Q ss_pred             CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972           33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL  112 (307)
Q Consensus        33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~  112 (307)
                      +.-|++...-+ ....+..+++|           .+...+-+.    ....+.|++|+|+++. .+   +......+.++
T Consensus        34 ~~~C~Rc~~l~-hy~~~~~v~~~-----------~e~f~~~l~----~i~~~~~~il~VvD~~-d~---~~~~~~~l~~~   93 (368)
T 3h2y_A           34 QVICQRCFRLK-HYNEIQDVSLT-----------DDDFLRILN----GIGKSDALVVKIVDIF-DF---NGSWLPGLHRF   93 (368)
T ss_dssp             ----------------------------------CHHHHHHHH----HHHHSCCEEEEEEETT-SH---HHHCCTTHHHH
T ss_pred             CcEEhhhhhhh-ccCccccCCCC-----------HHHHHHHHH----HHhccCcEEEEEEECC-CC---cccHHHHHHHH
Confidence            45677665555 55555656655           233222222    2234788999999986 33   23334455666


Q ss_pred             hccccCCeEEEEEecCCCCCC
Q 044972          113 FGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus       113 FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ++   -+.+|||+|+.|.+..
T Consensus        94 ~~---~~p~ilV~NK~DL~~~  111 (368)
T 3h2y_A           94 VG---NNKVLLVGNKADLIPK  111 (368)
T ss_dssp             SS---SSCEEEEEECGGGSCT
T ss_pred             hC---CCcEEEEEEChhcCCc
Confidence            65   4679999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=83.80  E-value=0.44  Score=41.40  Aligned_cols=16  Identities=6%  Similarity=-0.336  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.+||||||+++.|.
T Consensus        22 ~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           22 LGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999883

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=83.80  E-value=0.46  Score=41.90  Aligned_cols=16  Identities=6%  Similarity=-0.363  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||++..|.
T Consensus        35 ~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           35 LGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999884

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=83.77  E-value=2.4  Score=38.92  Aligned_cols=94  Identities=12%  Similarity=0.098  Sum_probs=53.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      .||+|+||+++...|...  .  .        .|..      ....+..+|..   |-   ..+.+++.. +...+...+
T Consensus        24 ~Gp~G~GKtt~a~~la~~--~--~--------~~~~------~~~d~~~l~~~---~~---~~~id~ir~-li~~~~~~p   78 (305)
T 2gno_A           24 NGEDLSYPREVSLELPEY--V--E--------KFPP------KASDVLEIDPE---GE---NIGIDDIRT-IKDFLNYSP   78 (305)
T ss_dssp             ECSSSSHHHHHHHHHHHH--H--H--------TSCC------CTTTEEEECCS---SS---CBCHHHHHH-HHHHHTSCC
T ss_pred             ECCCCCCHHHHHHHHHHh--C--c--------hhhc------cCCCEEEEcCC---cC---CCCHHHHHH-HHHHHhhcc
Confidence            699999999999887641  0  0        0100      12345666655   41   233444443 444443332


Q ss_pred             -CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           83 -DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        83 -pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                       .|.+-|+++-.++ +||..-.+++-.+.+    +--.+++++|+
T Consensus        79 ~~~~~kvviIdead-~lt~~a~naLLk~LE----ep~~~t~fIl~  118 (305)
T 2gno_A           79 ELYTRKYVIVHDCE-RMTQQAANAFLKALE----EPPEYAVIVLN  118 (305)
T ss_dssp             SSSSSEEEEETTGG-GBCHHHHHHTHHHHH----SCCTTEEEEEE
T ss_pred             ccCCceEEEeccHH-HhCHHHHHHHHHHHh----CCCCCeEEEEE
Confidence             3566777777777 999877665444433    22356666655

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=83.68  E-value=0.28  Score=46.32  Aligned_cols=19  Identities=11%  Similarity=-0.337  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|..
T Consensus        77 iG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           77 FAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EECTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999964

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=83.66  E-value=2.1  Score=45.03  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      .||||+|||++...|.+.-                        |.++..||.|   .+.+.....  ..+.+...+..+.
T Consensus       244 ~GPPGTGKT~LAraiA~el------------------------g~~~~~v~~~---~l~sk~~ge--se~~lr~lF~~A~  294 (806)
T 3cf2_A          244 YGPPGTGKTLIARAVANET------------------------GAFFFLINGP---EIMSKLAGE--SESNLRKAFEEAE  294 (806)
T ss_dssp             ECCTTSCHHHHHHHHHTTT------------------------TCEEEEEEHH---HHHSSCTTH--HHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh------------------------CCeEEEEEhH---HhhcccchH--HHHHHHHHHHHHH
Confidence            5999999999999987641                        2345667777   555433222  2223333344444


Q ss_pred             CCCeEEEEEEeCCC-------CCCHHHHHHHHHHHHhh-ccccCCeEEEEEe
Q 044972           83 DGIHAVLIVFSVRN-------RFSEEEGAAIHSLESLF-GKKVFDYMIVVFT  126 (307)
Q Consensus        83 pGpha~LLVl~~~~-------RfT~ee~~~l~~i~~~F-G~~~~~~~IVLfT  126 (307)
                      ...-+|||+-.++.       .-.+.++.++..+...+ |-....+++|+.|
T Consensus       295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaa  346 (806)
T 3cf2_A          295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA  346 (806)
T ss_dssp             TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred             HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence            33335666655541       11233556666555443 3333445655544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=83.63  E-value=0.31  Score=53.62  Aligned_cols=19  Identities=11%  Similarity=-0.344  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus       422 vG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          422 VGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             ECCSSSSHHHHHHHTTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999964

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=83.58  E-value=0.28  Score=46.14  Aligned_cols=18  Identities=11%  Similarity=-0.114  Sum_probs=16.6

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|++|+||||+++.|+|.
T Consensus       137 ~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          137 FGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=83.36  E-value=0.5  Score=47.99  Aligned_cols=20  Identities=15%  Similarity=-0.200  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.||||||+++.|.|--.
T Consensus       388 ~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          388 VGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCCCHHHHHHHHhcCCC
Confidence            69999999999999999753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=83.33  E-value=0.45  Score=40.55  Aligned_cols=19  Identities=11%  Similarity=-0.260  Sum_probs=16.4

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|.+||||||+.+.|++.
T Consensus         9 i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            9 VVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHh
Confidence            3699999999999999863

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=83.27  E-value=2.1  Score=42.13  Aligned_cols=18  Identities=11%  Similarity=-0.117  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||+|||++++.|.|.
T Consensus        55 ~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           55 VGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999873

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=83.14  E-value=0.35  Score=43.80  Aligned_cols=16  Identities=0%  Similarity=-0.267  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|.+||||||+++.|-
T Consensus        81 ~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           81 TGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999885

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=83.14  E-value=0.32  Score=43.28  Aligned_cols=16  Identities=13%  Similarity=-0.130  Sum_probs=13.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .||||+|||+++.+|.
T Consensus        64 ~GPPGtGKTt~a~ala   79 (212)
T 1tue_A           64 CGPANTGKSYFGMSFI   79 (212)
T ss_dssp             ESCGGGCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999998876664

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=83.13  E-value=4.2  Score=37.31  Aligned_cols=110  Identities=7%  Similarity=0.008  Sum_probs=51.4

Q ss_pred             CCCCCCcHHHHHHHHH----CCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL----GRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL----G~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      .|++|+||+++...+.    +... .... +.+.-..|..... . ....+.+++..   +- ....+.+++ +++.+.+
T Consensus        30 ~G~~G~GKt~~a~~la~~l~~~~~-~~~~-~c~~c~~c~~~~~-~-~~~d~~~~~~~---~~-~~~~~i~~i-r~l~~~~  100 (334)
T 1a5t_A           30 QALPGMGDDALIYALSRYLLCQQP-QGHK-SCGHCRGCQLMQA-G-THPDYYTLAPE---KG-KNTLGVDAV-REVTEKL  100 (334)
T ss_dssp             ECCTTSCHHHHHHHHHHHHTCSSC-BTTB-CCSCSHHHHHHHH-T-CCTTEEEECCC---TT-CSSBCHHHH-HHHHHHT
T ss_pred             ECCCCchHHHHHHHHHHHHhCCCC-CCCC-CCCCCHHHHHHhc-C-CCCCEEEEecc---cc-CCCCCHHHH-HHHHHHH
Confidence            5999999999987653    3221 1000 1111111221000 0 11235556543   11 112333444 3454444


Q ss_pred             HhcC-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           79 GMAK-DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        79 ~ls~-pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ...+ .|..-|+++-.++ .+|.+-..++   .+.+-+ --.+++++++
T Consensus       101 ~~~~~~~~~kvviIdead-~l~~~a~naL---Lk~lEe-p~~~~~~Il~  144 (334)
T 1a5t_A          101 NEHARLGGAKVVWVTDAA-LLTDAAANAL---LKTLEE-PPAETWFFLA  144 (334)
T ss_dssp             TSCCTTSSCEEEEESCGG-GBCHHHHHHH---HHHHTS-CCTTEEEEEE
T ss_pred             hhccccCCcEEEEECchh-hcCHHHHHHH---HHHhcC-CCCCeEEEEE
Confidence            3332 3566777777777 8987655543   343333 2345555554

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=82.91  E-value=0.43  Score=48.33  Aligned_cols=19  Identities=16%  Similarity=-0.162  Sum_probs=17.0

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|.||||||+++|+|+..
T Consensus       219 IaG~TGSGKS~~L~tlI~s  237 (574)
T 2iut_A          219 VAGTTGSGKSVGVNAMLLS  237 (574)
T ss_dssp             EECCTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            4799999999999998864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=82.89  E-value=0.45  Score=40.98  Aligned_cols=15  Identities=7%  Similarity=-0.210  Sum_probs=14.1

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|++|+||||++.+|
T Consensus        29 ~G~NgsGKStil~ai   43 (203)
T 3qks_A           29 IGQNGSGKSSLLDAI   43 (203)
T ss_dssp             ECCTTSSHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHH
Confidence            699999999999988

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=82.85  E-value=0.53  Score=47.87  Aligned_cols=24  Identities=17%  Similarity=-0.184  Sum_probs=19.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSK   26 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~   26 (307)
                      +|+.||||||+++.|.|-....++
T Consensus       384 iG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          384 MGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             ESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCCC
Confidence            699999999999999997644433

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=82.82  E-value=0.45  Score=45.11  Aligned_cols=17  Identities=6%  Similarity=-0.244  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+|||||||++..|..
T Consensus        13 ~GptgSGKTtla~~La~   29 (340)
T 3d3q_A           13 VGPTASGKTELSIEVAK   29 (340)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCcCcHHHHHHHHHH
Confidence            69999999999998864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=82.43  E-value=0.33  Score=47.29  Aligned_cols=19  Identities=0%  Similarity=-0.433  Sum_probs=17.3

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|..
T Consensus       163 vG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          163 FAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EECTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            5999999999999999964

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=82.28  E-value=0.52  Score=41.42  Aligned_cols=18  Identities=11%  Similarity=-0.143  Sum_probs=15.9

Q ss_pred             CCCCCCCcHHHHHHHHHC
Q 044972            2 CACEYIKICTTTGNSILG   19 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG   19 (307)
                      ..|+||+|||+++..|.+
T Consensus        49 l~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           49 LVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CBCSSCSSHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHH
Confidence            369999999999998865

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=82.19  E-value=0.41  Score=41.69  Aligned_cols=17  Identities=12%  Similarity=-0.169  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++||||||+++.|.+
T Consensus        22 ~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           22 DGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             ECSSCSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998854

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=82.14  E-value=0.48  Score=44.57  Aligned_cols=18  Identities=6%  Similarity=-0.217  Sum_probs=15.7

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+|||||||++..|...
T Consensus        11 ~GptGsGKTtla~~La~~   28 (323)
T 3crm_A           11 MGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999988643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=81.75  E-value=1.1  Score=44.21  Aligned_cols=17  Identities=6%  Similarity=-0.285  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|..
T Consensus       244 ~GppGtGKT~lAraia~  260 (489)
T 3hu3_A          244 YGPPGTGKTLIARAVAN  260 (489)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHH
Confidence            59999999999999843

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=81.70  E-value=3.5  Score=37.41  Aligned_cols=63  Identities=16%  Similarity=0.124  Sum_probs=38.1

Q ss_pred             EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEe
Q 044972           48 VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        48 ~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      .++|||||   .....  .+..          ....-.|.+|+|++.+ ..+..+. .+++.+... |   .+..-||+|
T Consensus       203 D~VIIDtp---p~~~~--~da~----------~l~~~aD~vllVv~~~-~~~~~~~~~~~~~l~~~-g---~~~~GvVlN  262 (286)
T 3la6_A          203 DLVLIDTP---PILAV--TDAA----------IVGRHVGTTLMVARYA-VNTLKEVETSLSRFEQN-G---IPVKGVILN  262 (286)
T ss_dssp             SEEEEECC---CTTTC--THHH----------HHTTTCSEEEEEEETT-TSBHHHHHHHHHHHHHT-T---CCCCEEEEE
T ss_pred             CEEEEcCC---CCcch--HHHH----------HHHHHCCeEEEEEeCC-CCcHHHHHHHHHHHHhC-C---CCEEEEEEc
Confidence            58999999   55432  1111          1234578899999987 6665543 344555432 2   445667788


Q ss_pred             cCCC
Q 044972          127 RGDE  130 (307)
Q Consensus       127 ~~D~  130 (307)
                      +.+.
T Consensus       263 ~v~~  266 (286)
T 3la6_A          263 SIFR  266 (286)
T ss_dssp             EECC
T ss_pred             Cccc
Confidence            8764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=81.64  E-value=3.4  Score=39.78  Aligned_cols=83  Identities=13%  Similarity=0.173  Sum_probs=51.5

Q ss_pred             CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC---------CHHHH
Q 044972           33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF---------SEEEG  103 (307)
Q Consensus        33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf---------T~ee~  103 (307)
                      |.........+ ++..+.++||+   |--.-           ......+..+.|+||||+++. .|         ...=.
T Consensus       204 TiGi~~~~~~~-~~v~l~iwDta---GQe~~-----------r~~w~~yf~~a~~iIfV~dis-~ydq~l~ed~~~ns~~  267 (402)
T 1azs_C          204 TSGIFETKFQV-DKVNFHMFDVG---GQRDE-----------RRKWIQCFNDVTAIIFVVASS-SYNMVIREDNQTNRLQ  267 (402)
T ss_dssp             CCSEEEEEEEE-TTEEEEEEEEC---CSGGG-----------GGGGGGGTTTCCEEEEEEETT-GGGCBCTTTSCSBHHH
T ss_pred             eeeeEEEEeec-CCccceecccc---hhhhh-----------hhhhHhhccCCCEEEEEEECc-ccccccccccccchHH
Confidence            33334445567 88999999999   85321           111234678999999999987 42         11223


Q ss_pred             HHHHHHHHhhccccC--CeEEEEEecCCCC
Q 044972          104 AAIHSLESLFGKKVF--DYMIVVFTRGDEL  131 (307)
Q Consensus       104 ~~l~~i~~~FG~~~~--~~~IVLfT~~D~L  131 (307)
                      .+..++..+......  -.+|||+++.|..
T Consensus       268 e~~~~~~~i~~~~~~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          268 EALNLFKSIWNNRWLRTISVILFLNKQDLL  297 (402)
T ss_dssp             HHHHHHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred             HHHHHHHHHHhcccCCCCeEEEEEEChhhh
Confidence            345556665544322  3578888888854

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=81.60  E-value=0.43  Score=43.87  Aligned_cols=18  Identities=11%  Similarity=-0.322  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|++|+||||++..|.+.
T Consensus        52 ~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           52 YGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=81.58  E-value=0.54  Score=44.32  Aligned_cols=69  Identities=17%  Similarity=0.002  Sum_probs=36.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCc--ccccc------CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRA--FKSKV------GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEI   74 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~--F~s~~------s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI   74 (307)
                      +|||||||||++..|.-.-.  +.|..      +..-.|....  ..+. +|.+-.+||.-   .+.+. .+..+..+..
T Consensus         9 ~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~--~~E~-~gvphhlid~~---~~~e~-~s~~~F~~~a   81 (322)
T 3exa_A            9 VGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKIT--AEEM-DGVPHHLIDIK---DPSES-FSVADFQDLA   81 (322)
T ss_dssp             ECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCC--HHHH-TTCCEESSSCB---CTTSC-CCHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCC--HHHH-cCCCEEEeccC---Chhhh-ccHHHHHHHH
Confidence            69999999999999964321  11111      1111222111  1234 77788888877   55443 3444444443


Q ss_pred             HHHH
Q 044972           75 VKCI   78 (307)
Q Consensus        75 ~kcv   78 (307)
                      ...+
T Consensus        82 ~~~i   85 (322)
T 3exa_A           82 TPLI   85 (322)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=81.57  E-value=1.4  Score=46.01  Aligned_cols=17  Identities=6%  Similarity=-0.253  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|..
T Consensus       594 ~Gp~GtGKT~lA~~la~  610 (854)
T 1qvr_A          594 LGPTGVGKTELAKTLAA  610 (854)
T ss_dssp             BSCSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999987753

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=81.48  E-value=7.4  Score=36.60  Aligned_cols=84  Identities=11%  Similarity=0.133  Sum_probs=52.4

Q ss_pred             CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC---------CHHHH
Q 044972           33 TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF---------SEEEG  103 (307)
Q Consensus        33 T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf---------T~ee~  103 (307)
                      |.........+ ++..+.++||+   |-       +    ........+..|.|++|||+++. .|         ...=.
T Consensus       148 TiGi~~~~~~~-~~v~l~iwDta---GQ-------e----~~R~~w~~yy~~a~~iIfV~diS-~ydq~l~e~~~~nr~~  211 (340)
T 4fid_A          148 TTGIHEYDFVV-KDIPFHLIDVG---GQ-------R----SERKXWVSFFSDVDCAIFVTSLA-EYDMKLYEDGNTSRLT  211 (340)
T ss_dssp             CCSCEEEEEES-SSCEEEEEECC---SC-------H----HHHHHHHTTSCSCSEEEEEEEGG-GTTCBCC--CCSBHHH
T ss_pred             eeeeEEEEEEe-eeeeeccccCC---Cc-------c----cccccHHHHhccCCEEEEEEECC-ccccccccccccchHH
Confidence            33444555666 88899999999   73       1    11222335678999999999985 22         11123


Q ss_pred             HHHHHHHHhhccccC--CeEEEEEecCCCCC
Q 044972          104 AAIHSLESLFGKKVF--DYMIVVFTRGDELE  132 (307)
Q Consensus       104 ~~l~~i~~~FG~~~~--~~~IVLfT~~D~L~  132 (307)
                      ..+.++..+......  -.+||++++.|.+.
T Consensus       212 es~~~~~~i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          212 ESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             HHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred             HHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence            345566666554433  36778888888653

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=81.41  E-value=0.58  Score=40.08  Aligned_cols=15  Identities=13%  Similarity=-0.254  Sum_probs=12.9

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|+||+|||+++-.|
T Consensus        36 ~G~pG~GKT~l~l~~   50 (251)
T 2zts_A           36 TGGTGTGKTTFAAQF   50 (251)
T ss_dssp             ECCTTSSHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHH
Confidence            699999999998554

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=81.38  E-value=11  Score=30.42  Aligned_cols=28  Identities=32%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             HhcHHHHHHHHHHHHhhhhhhHHhhcCC
Q 044972          272 IKSNEEIFNLREKLERGQRETEELRNGV  299 (307)
Q Consensus       272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~  299 (307)
                      ..-.+||..|+.+|..|.-+.+.||+..
T Consensus        74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~  101 (121)
T 3mq7_A           74 EELEGEITTLNHKLQDASAEVERLRREN  101 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3456899999999999999999998754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=81.33  E-value=0.62  Score=40.90  Aligned_cols=17  Identities=18%  Similarity=-0.206  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|++||||||+++.|..
T Consensus        32 ~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           32 EGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999998865

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=81.13  E-value=0.57  Score=45.55  Aligned_cols=69  Identities=9%  Similarity=-0.112  Sum_probs=37.2

Q ss_pred             CCCCCCcHHHHHHHHHCCC--ccccccCC-----CC-CCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRR--AFKSKVGS-----SE-DTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEI   74 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~--~F~s~~s~-----~s-vT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI   74 (307)
                      +|+|||||||++..|.-.-  .+.|..+.     -+ .|....  ..+. +|.+-.+||.-   .+.+ ..+..+..+..
T Consensus         8 ~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~--~~E~-~gv~hhlid~~---~~~~-~~s~~~F~~~a   80 (409)
T 3eph_A            8 AGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHP--LQER-EGIPHHVMNHV---DWSE-EYYSHRFETEC   80 (409)
T ss_dssp             EECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCC--GGGT-TTCCEESCSCB---CTTS-CCCHHHHHHHH
T ss_pred             ECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCC--HHHH-cCchhhcCCcc---ChHh-HhhHHHHHHHH
Confidence            6999999999999885321  23332221     12 122111  1234 67778888877   5443 34444444444


Q ss_pred             HHHH
Q 044972           75 VKCI   78 (307)
Q Consensus        75 ~kcv   78 (307)
                      ...+
T Consensus        81 ~~~i   84 (409)
T 3eph_A           81 MNAI   84 (409)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=80.97  E-value=0.47  Score=50.98  Aligned_cols=20  Identities=15%  Similarity=-0.157  Sum_probs=18.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+|+.||||||+++.|.|.-
T Consensus       704 IiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          704 VIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             ECSCCCHHHHHHHHHHTTSS
T ss_pred             EECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999963

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=80.92  E-value=3.3  Score=44.09  Aligned_cols=13  Identities=0%  Similarity=-0.526  Sum_probs=11.7

Q ss_pred             CCCCCCcHHHHHH
Q 044972            3 ACEYIKICTTTGN   15 (307)
Q Consensus         3 ~~~tGsGKSStgN   15 (307)
                      +|++||||||+++
T Consensus       616 ~G~SGSGKSTLl~  628 (916)
T 3pih_A          616 TGVSGSGKSSLVM  628 (916)
T ss_dssp             ECSTTSSHHHHHH
T ss_pred             EccCCCChhhhHH
Confidence            6999999999974

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=80.89  E-value=0.59  Score=43.94  Aligned_cols=17  Identities=6%  Similarity=-0.269  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +||||||||+++..|..
T Consensus        16 ~GptgsGKt~la~~La~   32 (316)
T 3foz_A           16 MGPTASGKTALAIELRK   32 (316)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHH
Confidence            69999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=80.79  E-value=0.58  Score=41.50  Aligned_cols=17  Identities=6%  Similarity=-0.306  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+||+|||++...|..
T Consensus        56 ~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           56 IGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998853

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=80.74  E-value=0.55  Score=42.72  Aligned_cols=17  Identities=6%  Similarity=-0.453  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++...|.+
T Consensus        43 ~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           43 YGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999999998875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=80.47  E-value=0.69  Score=40.26  Aligned_cols=17  Identities=6%  Similarity=-0.310  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+|||||+|.+..|.-
T Consensus         6 ~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            6 LGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988853

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=80.28  E-value=1.8  Score=49.97  Aligned_cols=97  Identities=13%  Similarity=0.087  Sum_probs=54.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCC-----------------c
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSS-----------------A   65 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~-----------------~   65 (307)
                      .||||+|||+++-.+.-.-              |      . .|..+.+||++   +.+++-                 .
T Consensus      1433 ~GppGtGKT~LA~ala~ea--------------~------~-~G~~v~Fi~~e---~~~~~l~a~~~G~dl~~l~v~~~~ 1488 (2050)
T 3cmu_A         1433 YGPESSGKTTLTLQVIAAA--------------Q------R-EGKTCAFIDAE---HALDPIYARKLGVDIDNLLCSQPD 1488 (2050)
T ss_dssp             ECCTTSSHHHHHHHHHHHH--------------H------T-TTCCEEEECTT---SCCCHHHHHHTTCCTTTCEEECCS
T ss_pred             ECCCCCCHHHHHHHHHHHH--------------H------H-cCCcEEEEEcc---cccCHHHHHHcCCCchhceeecCC
Confidence            6999999999997774311              0      0 45567777777   654221                 1


Q ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCH---------------HHHHHHHHHHHhhccccCCeEEEEEec
Q 044972           66 DFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSE---------------EEGAAIHSLESLFGKKVFDYMIVVFTR  127 (307)
Q Consensus        66 ~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~---------------ee~~~l~~i~~~FG~~~~~~~IVLfT~  127 (307)
                      +.+...+.+.+++..  .+|+++ +|-+++ -+..               +++..-..+.++.|---...++|+||.
T Consensus      1489 ~~E~~l~~~~~lvr~--~~~~lV-VIDsi~-al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A         1489 TGEQALEICDALARS--GAVDVI-VVDSVA-ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp             SHHHHHHHHHHHHHH--TCCSEE-EESCGG-GCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hHHHHHHHHHHHHhc--CCCCEE-EEcChh-HhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence            223444444444433  356543 444453 2221               334344556666666666778888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	307
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	6e-17

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 76.8 bits (188), Expect = 6e-17
 Identities = 29/207 (14%), Positives = 71/207 (34%), Gaps = 13/207 (6%)

Query: 11  TTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFV 70
           ++T NSI+G R     +   +      +  +  + G  +N+IDTP    L +     +  
Sbjct: 46  SSTVNSIIGER--VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTP---GLIEGGYINDMA 100

Query: 71  SKEIVKCIGMAKDGIHAVLIVFSV-RNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGD 129
              I     +    I  +L V  +   R    +     ++   FGK +++  IV  T   
Sbjct: 101 LNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 158

Query: 130 ELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKTKDAAKRTEQNGGQPYIDEIFA 189
               +    +++   +  + L ++++   + +               +N G+   ++   
Sbjct: 159 FSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDAQASDIPVVLI--ENSGRCNKNDSDE 215

Query: 190 ELKKRATKLRDQQVE--VDSLKGYSKR 214
           ++           V+   +     S+ 
Sbjct: 216 KVLPNGIAWIPHLVQTITEVALNKSES 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	307
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.63
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.45
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.43
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.43
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.36
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.33
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.32
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.22
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.18
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.18
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.11
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.07
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.04
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.03
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.02
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.99
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.89
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.87
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.79
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.77
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.74
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.72
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.67
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.62
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.6
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.59
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.56
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.55
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.54
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.54
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.53
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.5
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.5
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.49
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.49
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.49
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.48
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.46
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.46
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.45
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.45
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.45
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.43
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.39
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.38
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.38
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.36
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.35
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.32
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.3
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.29
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.28
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.26
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.24
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.22
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.22
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.13
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.09
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.09
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.04
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.95
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.87
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.86
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.78
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.77
d1okkd2	207	GTPase domain of the signal recognition particle r	97.7
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.66
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.51
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.49
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.46
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.32
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.0
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.87
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.88
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.73
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.35
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.17
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.97
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.76
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	94.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.32
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.31
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.19
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.19
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	94.13
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.09
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.01
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.01
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.96
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.76
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.73
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.72
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.72
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.67
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.64
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.63
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.59
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.52
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.45
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	93.43
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.43
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.4
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.24
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.22
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.15
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.04
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.03
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.01
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.93
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.9
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	92.86
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.77
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.7
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	92.67
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.67
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.61
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.51
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.49
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	92.42
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.41
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.27
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	92.2
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.17
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.16
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	92.02
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.9
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	91.9
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	91.86
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	91.69
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	91.59
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.58
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.57
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	91.56
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	91.47
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	91.43
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	91.32
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	91.26
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.2
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	91.14
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	91.03
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.97
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.8
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	90.7
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.65
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	90.28
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	90.24
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	90.14
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	90.13
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	90.03
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	90.02
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.91
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	89.83
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	89.54
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	89.29
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	89.07
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	88.96
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	88.76
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	88.61
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	87.57
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	87.54
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	87.37
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	87.04
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	87.04
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	86.13
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	85.87
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	85.18
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	85.15
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	84.99
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	84.72
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	84.53
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	84.12
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	84.03
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	83.89
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.67
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	83.67
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	83.52
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	83.37
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	82.27
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	82.13
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	81.47
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	80.9

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.96  E-value=5.4e-30  Score=233.26  Aligned_cols=176  Identities=16%  Similarity=0.155  Sum_probs=145.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||++|+|+|+++|.+.. ..++|+.|..+...+ +|+.|+|||||   ||+|+....+.+...+..+.  ..
T Consensus        38 vG~tg~GKSSliN~ilg~~~~~vs~-~~~~T~~~~~~~~~~-~g~~i~viDTP---Gl~~~~~~~~~~~~~i~~~~--~~  110 (257)
T d1h65a_          38 MGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTP---GLIEGGYINDMALNIIKSFL--LD  110 (257)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECC---CSEETTEECHHHHHHHHHHT--TT
T ss_pred             ECCCCCcHHHHHHHHhCCCceeecC-CCCcceeEEEEEEEe-ccEEEEEEeee---cccCCcchHHHHHHHHHHHH--hc
Confidence            6999999999999999999998764 458899999999999 99999999999   99998877777777776553  45


Q ss_pred             CCCeEEEEEEeCC-CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972           83 DGIHAVLIVFSVR-NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR  161 (307)
Q Consensus        83 pGpha~LLVl~~~-~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~  161 (307)
                      +++|++|||++++ .|||.++..+++.+..+||+++|+|+||||||+|.+.+++.++++|+.. ....++.+|..|.++.
T Consensus       111 ~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~~~~~~  189 (257)
T d1h65a_         111 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSGASLK  189 (257)
T ss_dssp             CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHHHhhhh
Confidence            7899999999986 4899999999999999999999999999999999998767899999986 6778999999998875


Q ss_pred             EEEcCCCCchhhHHHHcCCCCCChHHH
Q 044972          162 VLFDNKTKDAAKRTEQNGGQPYIDEIF  188 (307)
Q Consensus       162 ~~fnNk~~~~~~~~~~n~g~~yt~~~~  188 (307)
                      +.+....-  .....+|++.||+|++.
T Consensus       190 ~~~~~~~~--~~~l~en~~~~~~n~~~  214 (257)
T d1h65a_         190 KDAQASDI--PVVLIENSGRCNKNDSD  214 (257)
T ss_dssp             TTSGGGCC--CEEECCCCTTCCBCTTS
T ss_pred             hhhccccC--CEEEEecCCcccccccc
Confidence            33221110  00111677788887643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=2.7e-15  Score=126.14  Aligned_cols=120  Identities=18%  Similarity=0.111  Sum_probs=91.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|+|.+.+.... ..+.|..+......+ .|..++++|||   |+.+.......   .+...+..+.
T Consensus        11 vG~~~~GKSSLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~-~~~~~~~~Dtp---G~~~~~~~~~~---~~~~~~~~~~   82 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTP---GLHKPMDALGE---FMDQEVYEAL   82 (178)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECC---CCCCCCSHHHH---HHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecc-cCCcccccccceeee-eeeeeeecccc---cccccccccch---hccccccccc
Confidence            6999999999999999998765432 334677777777788 99999999999   99876543332   2333333455


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...|++|||+++...++..+...+..++...+.   .++|||+|+.|....
T Consensus        83 ~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKY  130 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSS
T ss_pred             ccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccC
Confidence            788999999999878998888777877765443   579999999998654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=2.1e-13  Score=113.79  Aligned_cols=116  Identities=16%  Similarity=0.066  Sum_probs=80.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH----HHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF----EFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~----~~i~~eI~kcv   78 (307)
                      +|+|||||||++|+|+|+++..+.  ..++|+....    + .+..+.+||||   |+.......    +.+..++...+
T Consensus         6 vG~~nvGKSsLin~l~~~~~~~~~--~~g~T~~~~~----~-~~~~~~ivDtp---G~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLTGKKVRRGK--RPGVTRKIIE----I-EWKNHKIIDMP---GFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEBTTSSHHHHHHHHHSCCCSSSS--STTCTTSCEE----E-EETTEEEEECC---CBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeC--CCCEeecccc----c-ccccceecccC---Cceeccccccccccccchhhhhhh
Confidence            699999999999999999864332  2245665432    2 33457789999   886544332    33455566666


Q ss_pred             HhcCCCCeEEEEEEeCC-----------CCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           79 GMAKDGIHAVLIVFSVR-----------NRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~-----------~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.+.+|++++|++..           ..++..+...++.+..     ...++|||+|+.|.+++
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-----~~~p~iiv~NK~D~~~~  136 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN  136 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-----cCCCEEEEEeeeehhhh
Confidence            66777899999999763           1355566666666655     35679999999998865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=5.6e-13  Score=113.08  Aligned_cols=147  Identities=14%  Similarity=0.155  Sum_probs=89.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHH--HHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFE--FVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~--~i~~eI~kcv~l   80 (307)
                      +|.|||||||++|+|+|.+...........|....  .. . ....+.++|+|   |+.-......  .....+..-...
T Consensus        29 vG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~--~~-~-~~~~~~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~  101 (195)
T d1svia_          29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN--FY-I-INDELHFVDVP---GYGFAKVSKSEREAWGRMIETYIT  101 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEE--EE-E-ETTTEEEEECC---CBCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHhcCCCceEEeecccceeeecc--cc-c-ccccceEEEEE---eeccccccccccchhhhHHhhhhc
Confidence            69999999999999999764321111222333322  22 2 34577789999   6654333322  223333333444


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh-cCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL-CDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~-Cg~  159 (307)
                      .....+++++|+++...++.++...++.+...     -..++||+|+.|.+..  ..+++++..     +++.+.. ...
T Consensus       102 ~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-----~~piivv~NK~D~~~~--~~~~~~~~~-----~~~~l~~~~~~  169 (195)
T d1svia_         102 TREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIPK--GKWDKHAKV-----VRQTLNIDPED  169 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG--GGHHHHHHH-----HHHHHTCCTTS
T ss_pred             cccchhhhhhhhhccccccccccccccccccc-----cCcceechhhccccCH--HHHHHHHHH-----HHHHhcccCCC
Confidence            56778999999998778999999988888763     4579999999998866  456555532     4444433 444


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .++.+..++
T Consensus       170 ~~~~~SA~~  178 (195)
T d1svia_         170 ELILFSSET  178 (195)
T ss_dssp             EEEECCTTT
T ss_pred             CEEEEeCCC
Confidence            555555443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.1e-13  Score=132.17  Aligned_cols=111  Identities=12%  Similarity=-0.018  Sum_probs=81.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCC---CceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSED---TKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~sv---T~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|+|||||||++|+|+|...+..+....++   |+....  ..++++..++++|||   |+..+..+.+....++     
T Consensus        62 ~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~--~~~~~~~~~~l~DtP---G~~~~~~~~~~~~~~~-----  131 (400)
T d1tq4a_          62 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLP---GIGSTNFPPDTYLEKM-----  131 (400)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECC---CGGGSSCCHHHHHHHT-----
T ss_pred             ECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee--eeccCCCeEEEEeCC---CcccccccHHHHHHHh-----
Confidence            699999999999999998876655433333   332222  233377889999999   9988776666554433     


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                       .....|+||+|.+ + +|+..|...++.+.+.     .+++++|+|++|..
T Consensus       132 -~~~~~d~~l~~~~-~-~~~~~d~~l~~~l~~~-----~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         132 -KFYEYDFFIIISA-T-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD  175 (400)
T ss_dssp             -TGGGCSEEEEEES-S-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred             -hhhcceEEEEecC-C-CCCHHHHHHHHHHHHc-----CCCEEEEEeCcccc
Confidence             2234677777765 3 8999999999998873     57899999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.8e-12  Score=105.97  Aligned_cols=122  Identities=16%  Similarity=0.087  Sum_probs=84.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|+|||||||++|+|+|.+.+..... .+.|..-......+ .|..+.++|||   |+.+........  .+.+ ...+
T Consensus         6 lvG~~nvGKSsLin~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~d~~---g~~~~~~~~~~~--~~~~-~~~~   77 (161)
T d2gj8a1           6 IAGRPNAGKSSLLNALAGREAAIVTDI-AGTTRDVLREHIHI-DGMPLHIIDTA---GLREASDEVERI--GIER-AWQE   77 (161)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCSCCCSS-TTCCCSCEEEEEEE-TTEEEEEEECC---CCSCCSSHHHHH--HHHH-HHHH
T ss_pred             EECCCCCCHHHHHHHHhCCCceEeecc-cccccceEeeeeec-cCceeeecccc---ccccccccchhH--HHHH-HHHH
Confidence            479999999999999999987654322 23455555566677 99999999999   998865433221  1222 2233


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ..+.+++|+|++...+.+.++...+..+......  -.++|||.|+.|...+
T Consensus        78 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          78 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGE  127 (161)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCC
T ss_pred             HHhccccceeeccccccchhhhhhhhhhhhhccc--ccceeeccchhhhhhh
Confidence            4578999999988766676666665555554433  3678999999986543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=8.8e-13  Score=110.49  Aligned_cols=121  Identities=8%  Similarity=-0.007  Sum_probs=77.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|+|.+...+.  ..+.|..+.........+..+.++|||   |+.+.............+    ..
T Consensus         7 vG~~nvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~Dtp---G~~~~~~~~~~~~~~~l~----~~   77 (180)
T d1udxa2           7 VGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIP---GIIEGASEGKGLGLEFLR----HI   77 (180)
T ss_dssp             ECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECC---CCCCCGGGSCCSCHHHHH----HH
T ss_pred             ECCCCCCHHHHHHHHhCCCCceec--cCCCceeeeeceeeecCCCeEEEcCCC---eeecCchHHHHHHHHHHH----HH
Confidence            699999999999999998876543  234566666555555367899999999   987642211111112221    23


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+++++|+.+. ........ ....+...-.....+++|||+|+.|.+..
T Consensus        78 ~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~  128 (180)
T d1udxa2          78 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE  128 (180)
T ss_dssp             TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             Hhhhhhhhhcccc-cccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH
Confidence            5678999999875 33333333 33333332223345789999999998865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=1.4e-12  Score=109.31  Aligned_cols=117  Identities=18%  Similarity=0.112  Sum_probs=78.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC-HHH----HHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD-FEF----VSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~-~~~----i~~eI~kc   77 (307)
                      +|.|||||||++|+|+|.+...+... .+.|..+......+ +|..+.++|||   |+...... ...    ....+...
T Consensus        14 iG~~~~GKSTLin~l~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~d~~---g~~~~~~~~~~~~~~~~~~~~~~~   88 (186)
T d1mkya2          14 VGRPNVGKSTLFNAILNKERALVSPI-PGTTRDPVDDEVFI-DGRKYVFVDTA---GLRRKSRVEPRTVEKYSNYRVVDS   88 (186)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCC-C------CCEEEEE-TTEEEEESSCS---CC-----------CCSCCHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHCCCcceeecc-cccccccceeeecc-CCceeeeeccC---CccccccccccccccchhHHHHHH
Confidence            69999999999999999887654332 35566777777788 99999999999   87432110 000    01112222


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      +    ..+|+++||+++...++.+....+..+..     ....+|+|+|+.|.+..
T Consensus        89 ~----~~~dvii~v~d~~~~~~~~~~~~~~~~~~-----~~~~~i~v~nK~D~~~~  135 (186)
T d1mkya2          89 I----EKADVVVIVLDATQGITRQDQRMAGLMER-----RGRASVVVFNKWDLVVH  135 (186)
T ss_dssp             H----HHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTT
T ss_pred             H----hcCCEEEEeecccccchhhHHHHHHHHHH-----cCCceeeeccchhhhcc
Confidence            2    35799999999976788888777777665     35688999999998765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=2.5e-11  Score=100.55  Aligned_cols=117  Identities=15%  Similarity=0.087  Sum_probs=75.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH--HHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF--EFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~--~~i~~eI~kcv~   79 (307)
                      .+|+|||||||++|.|+|.+...+.. ..+.|..+....... .+..+.+.|||   |+++.....  ......    ..
T Consensus         5 liG~~n~GKSsLi~~L~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~~~d~~---g~~~~~~~~~~~~~~~~----~~   75 (171)
T d1mkya1           5 IVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEW-YGKTFKLVDTC---GVFDNPQDIISQKMKEV----TL   75 (171)
T ss_dssp             EECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECT---TTTSSGGGCCCHHHHHH----HH
T ss_pred             EECCCCCCHHHHHHHHhCCCcceecc-cCceeeccccccccc-ccccccccccc---ceeeeeccccccccccc----cc
Confidence            36999999999999999987654322 234566666666677 88899999999   987653211  111111    12


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ......+++++++.....++..+...+..+...     -.++|||+|+.|.+.
T Consensus        76 ~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-----~~pviiv~NK~Dl~~  123 (171)
T d1mkya1          76 NMIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLR  123 (171)
T ss_dssp             HHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred             cccccCcEEEEeecccccccccccccccccccc-----cccccccchhhhhhh
Confidence            223567899999998778999888877777652     346899999999764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=2.3e-12  Score=108.21  Aligned_cols=122  Identities=12%  Similarity=0.022  Sum_probs=74.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||++|+|+|.++..+.  ..+.|+....+...+++|+.++++|||   |+.+.......+.....+.+..  
T Consensus         7 iG~~nvGKSSLin~L~~~~~~~~~--~~~~T~~~~~~~~~~~~~~~~~~~Dtp---G~~~~~~~~~~~~~~~l~~~~~--   79 (185)
T d1lnza2           7 VGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVETDDGRSFVMADLP---GLIEGAHQGVGLGHQFLRHIER--   79 (185)
T ss_dssp             ESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEECSSSCEEEEEEHH---HHHHHTTCTTTTHHHHHHHHHH--
T ss_pred             ECCCCCCHHHHHHHHhCCCCceec--CCCceEeeeeceeEecCCcEEEEecCC---CcccCchHHHHHHHHHHHHHHH--
Confidence            699999999999999998876543  334566655555555588999999999   9843211111222223232222  


Q ss_pred             CCCeEEEEEEeCC--CCCCHHH-HHHHHHHHHhhcccc-CCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVR--NRFSEEE-GAAIHSLESLFGKKV-FDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~--~RfT~ee-~~~l~~i~~~FG~~~-~~~~IVLfT~~D~L~~  133 (307)
                        .+++++++...  ......+ ..........+.... .+++|||+|+.|..+.
T Consensus        80 --~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~  132 (185)
T d1lnza2          80 --TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA  132 (185)
T ss_dssp             --CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             --hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH
Confidence              34555555432  1233333 333444455555543 4678999999997643

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=4.1e-12  Score=103.66  Aligned_cols=115  Identities=14%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCc--CHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSA--DFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~--~~~~i~~eI~kcv~l   80 (307)
                      +|.|||||||++|+|+|.+...... ..+.|.........+ .|..+.++|||   |+.+...  ............   
T Consensus         6 iG~~n~GKSSLin~l~g~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~Dt~---G~~~~~~~~~~~~~~~~~~~~---   77 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVI-RGILFRIVDTA---GVRSETNDLVERLGIERTLQE---   77 (160)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEE-TTEEEEEEESS---CCCSSCCTTCCCCCHHHHHHH---
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeec-cccccccceeEEEEe-CCeeEEecccc---ccccCCccHHHHHHHHHHHHH---
Confidence            6999999999999999987654332 224455556666777 99999999999   8754321  111101111111   


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                       ..+.|++++|+++......++......+       ...+.+++.+..|....
T Consensus        78 -~~~ad~ii~v~d~~~~~~~~~~~~~~~~-------~~~~~i~~~~k~d~~~~  122 (160)
T d1xzpa2          78 -IEKADIVLFVLDASSPLDEEDRKILERI-------KNKRYLVVINKVDVVEK  122 (160)
T ss_dssp             -HHHCSEEEEEEETTSCCCHHHHHHHHHH-------TTSSEEEEEEECSSCCC
T ss_pred             -HHhCCEEEEEEeCCCCcchhhhhhhhhc-------ccccceeeeeeccccch
Confidence             2346899999999867777766554433       24578888999988764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=1.2e-10  Score=100.99  Aligned_cols=132  Identities=14%  Similarity=0.078  Sum_probs=90.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCc-----------cccccC----CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            2 CACEYIKICTTTGNSILGRRA-----------FKSKVG----SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~-----------F~s~~s----~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      ++|.+++|||||.|.||+...           ......    ..+.|.........| +++.+++||||   |..|    
T Consensus         8 iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtP---Gh~d----   79 (204)
T d2c78a3           8 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCP---GHAD----   79 (204)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECC---CSGG----
T ss_pred             EEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCC---Cchh----
Confidence            479999999999999984310           111000    015666666667789 99999999999   9765    


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPEC  146 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~  146 (307)
                         ...++.+.+    .-.|+.|||+++...+..+....+..+..+    -.+++||+++++|.++.. ..++....   
T Consensus        80 ---f~~~~~~~~----~~aD~avlVvda~~Gv~~qt~~~~~~~~~~----gi~~iiv~iNK~D~~~~~-~~~~~~~~---  144 (204)
T d2c78a3          80 ---YIKNMITGA----AQMDGAILVVSAADGPMPQTREHILLARQV----GVPYIVVFMNKVDMVDDP-ELLDLVEM---  144 (204)
T ss_dssp             ---GHHHHHHHH----TTCSSEEEEEETTTCCCHHHHHHHHHHHHT----TCCCEEEEEECGGGCCCH-HHHHHHHH---
T ss_pred             ---hHHHHHHHH----HHCCEEEEEEECCCCCcHHHHHHHHHHHHc----CCCeEEEEEEecccCCCH-HHHHHHHH---
Confidence               223444443    347899999998778888888877777664    356788889999987641 22333332   


Q ss_pred             CchHHHHHHhcC
Q 044972          147 PKPLKEILQLCD  158 (307)
Q Consensus       147 ~~~Lk~Li~~Cg  158 (307)
                        .++.++...+
T Consensus       145 --~i~~~l~~~~  154 (204)
T d2c78a3         145 --EVRDLLNQYE  154 (204)
T ss_dssp             --HHHHHHHHTT
T ss_pred             --HHHHHHHhcC
Confidence              4666666543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.07  E-value=1.6e-10  Score=101.22  Aligned_cols=109  Identities=13%  Similarity=0.027  Sum_probs=75.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEE------------------EEEeCCeEEEEEeCCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQR------------------TMLKDGQVVNVIDTPAIARLFDSS   64 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~------------------~~~~~Gr~v~VIDTP~~~Gl~Dt~   64 (307)
                      +|.||+|||||+|.|+|.......  ..++|.......                  ..+ ++..+++||||   |..+-.
T Consensus        11 iGh~d~GKSTL~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtP---Gh~~f~   84 (227)
T d1g7sa4          11 LGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTP---GHEAFT   84 (227)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCC---TTSCCT
T ss_pred             EeCCCccHHHHHHHHHhhcchhee--cCceeeeccccccccccccccccccccceeecc-ccccccccccc---ceeccc
Confidence            699999999999999987543321  223332211111                  123 66789999999   854421


Q ss_pred             cCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           65 ADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        65 ~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .           ....+..+.|++|||+++...++.++...+..+..     .-..+||++|++|.+..
T Consensus        85 ~-----------~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~iivlNK~D~~~~  137 (227)
T d1g7sa4          85 T-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRM-----YRTPFVVAANKIDRIHG  137 (227)
T ss_dssp             T-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSTT
T ss_pred             c-----------cchhcccccceEEEEEecccCcccchhHHHHHhhc-----CCCeEEEEEECccCCCc
Confidence            1           11234567899999999986899999999888876     35579999999998764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=7.4e-10  Score=91.32  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=75.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|+|.+.+.... ....|+......... +...+.++|+|   |+....  ................
T Consensus        11 iG~~nvGKSSLin~L~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTP---GLHMEE--KRAINRLMNKAASSSI   83 (179)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSS---SCCHHH--HHHHHHHHTCCTTSCC
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecc-CCCceEEEEEeeeec-CCceeEeecCC---Cceecc--hhhhhhhhhhccccch
Confidence            4999999999999999998765432 223333344455555 88899999999   775321  1222222222222334


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+++|+|.+.. +...........+..     .....+++++..|++.+
T Consensus        84 ~~~~~~l~~~d~~-~~~~~~~~~~~~l~~-----~~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          84 GDVELVIFVVEGT-RWTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQE  128 (179)
T ss_dssp             CCEEEEEEEEETT-CCCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCC
T ss_pred             hhcceeEEEEecC-ccchhHHHHHHHhhh-----ccCceeeeeeeeeccch
Confidence            5678888888876 655555444444432     34457888899998876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.03  E-value=6.9e-10  Score=93.17  Aligned_cols=111  Identities=18%  Similarity=0.126  Sum_probs=72.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC-----CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS-----SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~-----~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      +|.||+|||||+|.|+|..........     .+.|.........+ ++..++++|||   |..       +..+++.. 
T Consensus        11 iG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~---g~~-------~~~~~~~~-   78 (179)
T d1wb1a4          11 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAP---GHA-------DLIRAVVS-   78 (179)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCS---SHH-------HHHHHHHH-
T ss_pred             EeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCccccccccc---ccc-------ccccchhh-
Confidence            699999999999999986532211110     11222223334456 88999999999   742       33333333 


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                         +....|++++|+++......+++..+..+...     -..++||+|+.|....
T Consensus        79 ---~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-----~~p~iiv~NKiD~~~~  126 (179)
T d1wb1a4          79 ---AADIIDLALIVVDAKEGPKTQTGEHMLILDHF-----NIPIIVVITKSDNAGT  126 (179)
T ss_dssp             ---HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCBCEEEECTTSSCH
T ss_pred             ---hhhhccccccccccccccchhhhhhhhhhhhc-----CCcceeccccccccCH
Confidence               34578999999998767777777776665542     3468999999998765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.02  E-value=8.6e-10  Score=95.28  Aligned_cols=132  Identities=11%  Similarity=0.088  Sum_probs=88.9

Q ss_pred             CCCCCCCcHHHHHHHHHCC------Ccc----cccc----CCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCH
Q 044972            2 CACEYIKICTTTGNSILGR------RAF----KSKV----GSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADF   67 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~------~~F----~s~~----s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~   67 (307)
                      .+|.+++|||||.|.|++.      ..+    ....    ...+.|..+......+ .++.+++||||   |-       
T Consensus         8 iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtP---Gh-------   76 (196)
T d1d2ea3           8 TIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCP---GH-------   76 (196)
T ss_dssp             EESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECS---SH-------
T ss_pred             EEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCc---ch-------
Confidence            3699999999999999852      111    0000    1124555555566677 89999999999   84       


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCC
Q 044972           68 EFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECP  147 (307)
Q Consensus        68 ~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~  147 (307)
                      .+..+++.+    +..-.|+.|||+++..-+.++.+..+..+..+    -.+++||++++.|.+.+  ...-+.+..   
T Consensus        77 ~~f~~~~~~----~~~~aD~allVVda~~G~~~QT~~~~~~a~~~----~~~~iIv~iNK~D~~~~--~~~~~~i~~---  143 (196)
T d1d2ea3          77 ADYVKNMIT----GTAPLDGCILVVAANDGPMPQTREHLLLARQI----GVEHVVVYVNKADAVQD--SEMVELVEL---  143 (196)
T ss_dssp             HHHHHHHHH----TSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT----TCCCEEEEEECGGGCSC--HHHHHHHHH---
T ss_pred             HHHHHHHHH----HHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh----cCCcEEEEEeccccccc--HHHHHHHHH---
Confidence            333444443    34567999999999877888888877777654    35678999999998765  222233332   


Q ss_pred             chHHHHHHhcC
Q 044972          148 KPLKEILQLCD  158 (307)
Q Consensus       148 ~~Lk~Li~~Cg  158 (307)
                       .++.++..+|
T Consensus       144 -~i~~~l~~~~  153 (196)
T d1d2ea3         144 -EIRELLTEFG  153 (196)
T ss_dssp             -HHHHHHHHTT
T ss_pred             -HHHHHHHHhC
Confidence             4677777654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=2e-08  Score=90.11  Aligned_cols=147  Identities=13%  Similarity=0.101  Sum_probs=84.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCce-eEEEEEE--------------------------------------
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKT-CEMQRTM--------------------------------------   42 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~-c~~~~~~--------------------------------------   42 (307)
                      .+|..++||||++|+|||.+.+.++..  ++|.. |....+.                                      
T Consensus        31 vvG~~SsGKSsliNaLlg~~~lP~~~~--~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (299)
T d2akab1          31 VVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNK  108 (299)
T ss_dssp             EEEBTTSCHHHHHHHHHTSCCSCCCSS--CSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTT
T ss_pred             EEcCCCCCHHHHHHHHhCCCcCCCCCC--ccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCCCc
Confidence            369999999999999999997766542  34431 1211110                                      


Q ss_pred             ------------EeCCeEEEEEeCCCCCCCCCCCcC-----HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHH
Q 044972           43 ------------LKDGQVVNVIDTPAIARLFDSSAD-----FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAA  105 (307)
Q Consensus        43 ------------~~~Gr~v~VIDTP~~~Gl~Dt~~~-----~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~  105 (307)
                                  +|.-..+++||||   |+..+...     .......+...  ...+--|++|+|.+....++..+.. 
T Consensus       109 ~~~~~~i~l~~~~p~~~~l~liD~P---G~~~~~~~~~~~~~~~~i~~~~~~--y~~~~~~~il~v~~a~~~~~~~~~~-  182 (299)
T d2akab1         109 GISPVPINLRVYSPHVLNLTLVDLP---GMTKVPVGDQPPDIEFQIRDMLMQ--FVTKENCLILAVSPANSDLANSDAL-  182 (299)
T ss_dssp             CCCSCCEEEEEEETTCCSEEEEECC---CBCSSCCSSSCTTHHHHHHHHHHH--HHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred             CcCCccEEEEEcCCCCCCeeEEccC---CccccccCCcchhHHHHHHHHHHH--HhcCccceeeeecccccchhhhHHH-
Confidence                        1122458999999   99754321     11222222221  1123346788888887677776533 


Q ss_pred             HHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeEEEEcCCC
Q 044972          106 IHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       106 l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~~~fnNk~  168 (307)
                       ..++. +. ....++++|+|++|.+.+. ....+.+..        ....++..|+++-|..
T Consensus       183 -~~~~~-~~-~~~~r~i~Vltk~D~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~  233 (299)
T d2akab1         183 -KIAKE-VD-PQGQRTIGVITKLDLMDEG-TDARDVLEN--------KLLPLRRGYIGVVNRS  233 (299)
T ss_dssp             -HHHHH-HC-TTCSSEEEEEECGGGSCTT-CCCHHHHTT--------CSSCCTTCEEECCCCC
T ss_pred             -HHHHH-hC-cCCCceeeEEeccccccch-hhHHHHHhc--------ccccccCCeeeeecCc
Confidence             33333 22 2346899999999998752 222222222        2233456677766654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.99  E-value=2.7e-09  Score=87.15  Aligned_cols=110  Identities=12%  Similarity=0.023  Sum_probs=73.5

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|++||||||++|.|.|.. |.    ..++|.......... ++..+.++|||   |..           .+.......
T Consensus         7 ivG~~~~GKTsLi~~l~~~~-~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~---G~~-----------~~~~~~~~~   66 (165)
T d1ksha_           7 MLGLDNAGKTTILKKFNGED-VD----TISPTLGFNIKTLEH-RGFKLNIWDVG---GQK-----------SLRSYWRNY   66 (165)
T ss_dssp             EECSTTSSHHHHHHHHTTCC-CS----SCCCCSSEEEEEEEE-TTEEEEEEEEC---CSH-----------HHHTTGGGG
T ss_pred             EECCCCCCHHHHHHHHcCCC-CC----cccceEeeeeeeccc-cccceeeeecC---cch-----------hhhhHHHhh
Confidence            37999999999999998875 32    234455555566667 89999999999   842           122223456


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      ..++|++++|+++.++.+-.+  +...+.......  .-.+++||.|+.|....
T Consensus        67 ~~~~~~~i~v~d~~d~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  118 (165)
T d1ksha_          67 FESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA  118 (165)
T ss_dssp             CTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             hhhhhcceeeeecccchhHHH--HHHhhhhhhhhcccCCCceEEEEeccccccc
Confidence            679999999999764433332  233343333222  23578999999996543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=7.5e-09  Score=84.71  Aligned_cols=142  Identities=8%  Similarity=0.083  Sum_probs=77.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.|||||||++|+|+|.+...... ..+.|..-....... .+......++|   +.+.....................
T Consensus        22 vG~~NvGKSSL~n~L~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   96 (188)
T d1puia_          22 AGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQLINLFEVA-DGKRLVDLPGY---GYAEVPEEMKRKWQRALGEYLEKR   96 (188)
T ss_dssp             EECTTSSHHHHHTTTCCC--------------CCEEEEEEE-TTEEEEECCCC---C------CCHHHHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHhCCCceEeec-ccccceeeccceecc-cccceeeeecc---cccchhhhhhhhhhhhhhhhhhhh
Confidence            6999999999999999987654322 222222222333344 77777777777   555443332222222222222333


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCeE
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNRR  161 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R~  161 (307)
                      ....+++.+..............+..+..     .....+++++..|.+..  ......+.     .+++.+...++-+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~k~D~~~~--~~~~~~~~-----~~~~~l~~~~~~~  163 (188)
T d1puia_          97 QSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLAS--GARKAQLN-----MVREAVLAFNGDV  163 (188)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCH--HHHHHHHH-----HHHHHHGGGCSCE
T ss_pred             hheeEEEEeecccccchhHHHHHHHHhhh-----ccccccchhhhhhccCH--HHHHHHHH-----HHHHHHHhhCCCC
Confidence            44556666666655777777777777665     35678889999998875  33333332     3566666655543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.87  E-value=3.9e-09  Score=95.43  Aligned_cols=85  Identities=13%  Similarity=0.187  Sum_probs=45.7

Q ss_pred             eEEEEEeCCCCCCCCCCCcC------HHHHHHHHHHHHHhcCCCCeE-EEEEEeCCCCCCHHHHHHHHHHHHhhccccCC
Q 044972           47 QVVNVIDTPAIARLFDSSAD------FEFVSKEIVKCIGMAKDGIHA-VLIVFSVRNRFSEEEGAAIHSLESLFGKKVFD  119 (307)
Q Consensus        47 r~v~VIDTP~~~Gl~Dt~~~------~~~i~~eI~kcv~ls~pGpha-~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~  119 (307)
                      ..+++||||   |+..+...      ...+...+...+    ..+++ +|+|++....++.++  ++..++.+ .+ ...
T Consensus       131 ~~l~iiDtP---G~~~~~~~~~~~~~~~~~~~~~~~yi----~~~~~~il~v~~~~~~~~~~~--~~~~~~~~-~~-~~~  199 (306)
T d1jwyb_         131 VNLTLVDLP---GITKVPVGDQPTDIEQQIRRMVMAYI----KKQNAIIVAVTPANTDLANSD--ALQLAKEV-DP-EGK  199 (306)
T ss_dssp             CSEEEEECC---CCC---------CSHHHHHHHHHHHH----HSTTEEEEEEEESSSCSTTCS--HHHHHHHH-CS-SCS
T ss_pred             CCceEecCC---CccccccCCcchhHHHHHHHHHHHHH----hCCCceeEEeecccccccccH--HHHHHHHh-Cc-CCC
Confidence            578999999   99754322      122222222222    24554 566667654555543  23334443 22 356


Q ss_pred             eEEEEEecCCCCCCCcccHHHhcC
Q 044972          120 YMIVVFTRGDELEDNDETLEDYLG  143 (307)
Q Consensus       120 ~~IVLfT~~D~L~~~~~sie~yl~  143 (307)
                      ++++|+|++|.+... .....++.
T Consensus       200 r~i~Vitk~D~~~~~-~~~~~~l~  222 (306)
T d1jwyb_         200 RTIGVITKLDLMDKG-TDAMEVLT  222 (306)
T ss_dssp             SEEEEEECTTSSCSS-CCCHHHHT
T ss_pred             eEEEEEeccccccch-hHHHHHHh
Confidence            899999999988653 23334443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.79  E-value=2.1e-08  Score=88.00  Aligned_cols=132  Identities=9%  Similarity=-0.000  Sum_probs=84.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccc-------------------------------cCCCCCCceeEEEEEEEeCCeEEEE
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSK-------------------------------VGSSEDTKTCEMQRTMLKDGQVVNV   51 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~-------------------------------~s~~svT~~c~~~~~~~~~Gr~v~V   51 (307)
                      +|..++|||||.+.||........                               ......|.........+ .++.+++
T Consensus        15 iGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~~~i   93 (222)
T d1zunb3          15 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-AKRKFII   93 (222)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-SSEEEEE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec-cceEEEE
Confidence            699999999999999742111000                               00112333333445566 8999999


Q ss_pred             EeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           52 IDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        52 IDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ||||   |-.|       ...++..++    ...|+.+||+++...+..+....+..+.. +|   .+++||+.+++|..
T Consensus        94 iD~P---GH~d-------fv~~~~~g~----~~aD~ailVvda~~G~~~Qt~e~~~~~~~-~g---v~~iiv~vNK~D~~  155 (222)
T d1zunb3          94 ADTP---GHEQ-------YTRNMATGA----STCDLAIILVDARYGVQTQTRRHSYIASL-LG---IKHIVVAINKMDLN  155 (222)
T ss_dssp             EECC---CSGG-------GHHHHHHHH----TTCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCEEEEEEECTTTT
T ss_pred             Eecc---chhh-------hhhhhcccc----ccCceEEEEeccccCcccchHHHHHHHHH-cC---CCEEEEEEEccccc
Confidence            9999   8754       233444433    45789999999876788887776665554 33   68899999999987


Q ss_pred             CCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972          132 EDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus       132 ~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      +.+ ...-+++.    ..|..++++.+
T Consensus       156 ~~~-~~~~~~~~----~~l~~~~~~~~  177 (222)
T d1zunb3         156 GFD-ERVFESIK----ADYLKFAEGIA  177 (222)
T ss_dssp             TSC-HHHHHHHH----HHHHHHHHTTT
T ss_pred             ccc-ceehhhhH----HHHhhhhHhhc
Confidence            643 22223332    24677777654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=9.6e-09  Score=84.67  Aligned_cols=139  Identities=8%  Similarity=-0.053  Sum_probs=76.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.+ |.....+ ..+..-....... ++  ..+.++|||   |-.+           ......
T Consensus        10 vvG~~~vGKTsLi~~l~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~wDt~---G~e~-----------~~~~~~   72 (169)
T d3raba_          10 IIGNSSVGKTSFLFRYADDS-FTPAFVS-TVGIDFKVKTIYR-NDKRIKLQIWDTA---GQER-----------YRTITT   72 (169)
T ss_dssp             EECSTTSSHHHHHHHHHHSC-CCSSCCC-CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGG-----------GHHHHH
T ss_pred             EECCCCcCHHHHHHHHHcCC-CCccccc-ccccceeeEEEEe-ecceEEEEEEECC---Cchh-----------hHHHHH
Confidence            47999999999999999764 4433221 1222222233333 44  368889999   8421           111123


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc-CCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV-FDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~-~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....++|++|||+++.++-+-..  ...++........ -..++||.|+.|.....  .+       .....+.+.+..|
T Consensus        73 ~~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~v-------~~~~~~~~~~~~~  141 (169)
T d3raba_          73 AYYRGAMGFILMYDITNEESFNA--VQDWSTQIKTYSWDNAQVLLVGNKCDMEDER--VV-------SSERGRQLADHLG  141 (169)
T ss_dssp             TTTTTCCEEEEEEETTCHHHHHT--HHHHHHHHHHHCCSCCEEEEEEECTTCGGGC--CS-------CHHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEEECccchhhhh--hhhhhhhhhcccCCcceEEEEEeeccccccc--cc-------chhhhHHHHHHcC
Confidence            45688999999999863212111  1122222222222 34567788999854321  11       1123455666667


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -+|+-.+-++
T Consensus       142 ~~~~e~Sak~  151 (169)
T d3raba_         142 FEFFEASAKD  151 (169)
T ss_dssp             CEEEECBTTT
T ss_pred             CEEEEecCCC
Confidence            6775544443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.76  E-value=3.3e-08  Score=81.18  Aligned_cols=109  Identities=14%  Similarity=0.015  Sum_probs=69.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.|.+.+.....     .|.......... .+..+.+.|||   |-...    ..       ......
T Consensus        22 vG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~~-~~~~~~i~d~~---g~~~~----~~-------~~~~~~   81 (176)
T d1fzqa_          22 LGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIG---GQRKI----RP-------YWRSYF   81 (176)
T ss_dssp             EESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECS---SCGGG----HH-------HHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEecc-CCeeEeEeecc---ccccc----hh-------HHHHHh
Confidence            699999999999999987632221     122233444556 78899999999   75321    11       112234


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .+.|++|+|+++.++.+-.+  +...+..++-..  ....++||.|+.|....
T Consensus        82 ~~~~~ii~v~d~~d~~s~~~--~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~  132 (176)
T d1fzqa_          82 ENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA  132 (176)
T ss_dssp             TTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred             hccceeEEeeccccccchhh--hhhhhhhhhhhhccCCCeEEEEEEecccccc
Confidence            67899999999874444333  223333333222  23468899999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=6.2e-09  Score=87.51  Aligned_cols=115  Identities=8%  Similarity=-0.012  Sum_probs=66.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|+|||||||++|.|+|.+.-      ..+|+........+ +|..+.++|||   |.....   ........    ..
T Consensus         8 lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~~-~~~~~~l~D~~---g~~~~~---~~~~~~~~----~~   70 (209)
T d1nrjb_           8 IAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAADY-DGSGVTLVDFP---GHVKLR---YKLSDYLK----TR   70 (209)
T ss_dssp             EECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETTG-GGSSCEEEECC---CCGGGT---HHHHHHHH----HH
T ss_pred             EECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEEe-CCeEEEEEecc---cccchh---hHHHHHHH----HH
Confidence            3799999999999999997632      12344444445556 88999999999   865422   22222222    22


Q ss_pred             CCCCeEEEEEEeCCC--CCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRN--RFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~--RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.+++++.+..  ..-......+..+...+..  ..-..++||+|+.|.+..
T Consensus        71 ~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          71 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             hhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            334566666666431  1122222222222222221  123468899999998765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.72  E-value=3.4e-09  Score=95.31  Aligned_cols=62  Identities=16%  Similarity=0.044  Sum_probs=40.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSK   72 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~   72 (307)
                      +|.|||||||++|+|+|+++..++. ..++|+.-+.   .. .+..+.++|||   |+.-+...+.++..
T Consensus       118 vG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~---i~-~~~~~~l~DTP---Gi~~p~~~~~~~~~  179 (273)
T d1puja_         118 IGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQW---VK-VGKELELLDTP---GILWPKFEDELVGL  179 (273)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC-------------CC---EE-ETTTEEEEECC---CCCCSCCCCHHHHH
T ss_pred             EecCccchhhhhhhhhccceEEECC-cccccccceE---EE-CCCCeEEecCC---CccccCCccHHHHh
Confidence            6999999999999999999887764 3467775443   22 67889999999   99877665555433

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=7.8e-08  Score=78.97  Aligned_cols=140  Identities=12%  Similarity=-0.031  Sum_probs=79.8

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.+ |.........+.........+ +|.  .+.++|||   |-.+..           ....
T Consensus        11 vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~e~~~-----------~~~~   74 (170)
T d2g6ba1          11 LVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTA---GQERFR-----------SVTH   74 (170)
T ss_dssp             EECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECC---CC-------------------
T ss_pred             EECCCCcCHHHHHHHHHhCC-CCcccccceeeeeeEEEEEEe-cCcEEEEEEEECC---CchhhH-----------HHHH
Confidence            36999999999999999765 543333333334444545556 776  66789999   853211           1122


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++++|+++.++-|-.  .+..++...... ......+|+.++.|.....  .+       .......+.+..+
T Consensus        75 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~--~v-------~~~~~~~~~~~~~  143 (170)
T d2g6ba1          75 AYYRDAHALLLLYDVTNKASFD--NIQAWLTEIHEYAQHDVALMLLGNKVDSAHER--VV-------KREDGEKLAKEYG  143 (170)
T ss_dssp             CCGGGCSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECCSTTSCC--CS-------CHHHHHHHHHHHT
T ss_pred             HhhcCCceeEEEecCCcccchh--hhhhhhhhhhhccCCCceEEEEEeeechhhcc--cc-------cHHHHHHHHHHcC
Confidence            3456889999999986332222  222222222211 1234677778888765541  11       1234566777777


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -+|+-..-++
T Consensus       144 ~~~~e~Sak~  153 (170)
T d2g6ba1         144 LPFMETSAKT  153 (170)
T ss_dssp             CCEEECCTTT
T ss_pred             CEEEEEeCCC
Confidence            7776555443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.67  E-value=5e-08  Score=79.72  Aligned_cols=110  Identities=15%  Similarity=0.046  Sum_probs=67.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|++||||||++|.+.+.+ |....   ..|..-....... ++..+.++|||   |-.       ......    ....
T Consensus         8 ~G~~~~GKTsLl~~l~~~~-~~~~~---~~T~~~~~~~~~~-~~~~~~i~D~~---G~~-------~~~~~~----~~~~   68 (164)
T d1zd9a1           8 VGLQYSGKTTFVNVIASGQ-FNEDM---IPTVGFNMRKITK-GNVTIKLWDIG---GQP-------RFRSMW----ERYC   68 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCCSC---CCCCSEEEEEEEE-TTEEEEEEEEC---CSH-------HHHTTH----HHHH
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCCcc---cccceeeeeeeee-eeEEEEEeecc---ccc-------cccccc----cccc
Confidence            5999999999999999865 43222   2244334444566 88999999999   831       111111    1223


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~  133 (307)
                      .++|++++|+++..+.+-+  .+..++..+.-..  .-..++|+.|+.|....
T Consensus        69 ~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          69 RGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA  119 (164)
T ss_dssp             TTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             cccchhhcccccccccccc--hhhhhhhhhhhhhcccCCcEEEEEeccccchh
Confidence            6899999999986443322  1222333332222  13468899999986543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.1e-08  Score=79.20  Aligned_cols=134  Identities=11%  Similarity=-0.044  Sum_probs=77.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |...... ..+.........+ ++.  .+.++|||   |..+...-..           .
T Consensus        13 vG~~~vGKTsli~~l~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~Dt~---G~~~~~~~~~-----------~   75 (177)
T d1x3sa1          13 IGESGVGKSSLLLRFTDDT-FDPELAA-TIGVDFKVKTISV-DGNKAKLAIWDTA---GQERFRTLTP-----------S   75 (177)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCTTCCC-CCSEEEEEEEEEE-TTEEEEEEEEEEC---SSGGGCCSHH-----------H
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCcccc-ceeecceeEEEEE-eccccEEEEEECC---CchhhHHHHH-----------H
Confidence            6999999999999999865 5443322 2233333334445 654  58889999   8654321111           2


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhh--ccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLF--GKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~F--G~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ...++|++|+|+++.++-+  ...+..++..+.  +......++++.++.|....   .+       .....+.+.+..+
T Consensus        76 ~~~~~~~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~---~v-------~~~~~~~~~~~~~  143 (177)
T d1x3sa1          76 YYRGAQGVILVYDVTRRDT--FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR---EV-------DRNEGLKFARKHS  143 (177)
T ss_dssp             HHTTCCEEEEEEETTCHHH--HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC---CS-------CHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEECCCccc--cccchhhhhhhcccccccceeeEEEeeccccccc---cc-------cHHHHHHHHHHCC
Confidence            2368999999999863222  122333333332  33344566777777776543   11       1123566777777


Q ss_pred             CeEEEEc
Q 044972          159 NRRVLFD  165 (307)
Q Consensus       159 ~R~~~fn  165 (307)
                      -.|+-..
T Consensus       144 ~~~~e~S  150 (177)
T d1x3sa1         144 MLFIEAS  150 (177)
T ss_dssp             CEEEECC
T ss_pred             CEEEEEe
Confidence            6554433

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.62  E-value=1.3e-07  Score=77.04  Aligned_cols=111  Identities=8%  Similarity=-0.091  Sum_probs=67.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.|.|.+......     |.......... .+..+.++|+|   |.........           ...
T Consensus        21 vG~~~~GKSsLi~rl~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~---~~~~~~~~~~-----------~~~   80 (177)
T d1zj6a1          21 VGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVI-NNTRFLMWDIG---GQESLRSSWN-----------TYY   80 (177)
T ss_dssp             EESTTSSHHHHHHHHHTTSCEEEEC-----CSCSSCEEEEE-TTEEEEEEECC---C----CGGGH-----------HHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcccc-----ccceeEEEEee-cceEEEEeccc---cccccccchh-----------hhh
Confidence            6999999999999999987543322     11222233445 78899999999   7544322111           123


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      .++|++++|+.+.+.-+..................-..++||.|+.|....
T Consensus        81 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  131 (177)
T d1zj6a1          81 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  131 (177)
T ss_dssp             TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             ccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc
Confidence            578999999998744443332222222222223345678999999886443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=4.9e-08  Score=79.79  Aligned_cols=135  Identities=13%  Similarity=-0.016  Sum_probs=79.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....+ ++........... +|.  .+.++|||   |..+......           .
T Consensus         8 iG~~~vGKSsLi~rl~~~~-~~~~~~~-ti~~~~~~~~~~~-~~~~~~~~i~d~~---g~~~~~~~~~-----------~   70 (164)
T d1z2aa1           8 VGNGAVGKSSMIQRYCKGI-FTKDYKK-TIGVDFLERQIQV-NDEDVRLMLWDTA---GQEEFDAITK-----------A   70 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHCC-CCCCSSC-CCSSSEEEEEEEE-TTEEEEEEEECCT---TGGGTTCCCH-----------H
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCccccc-ccccccceeeeee-cCceeeeeeeccC---Cccchhhhhh-----------h
Confidence            6999999999999999654 5543322 2222333334444 664  67899999   8754332211           1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.+++++|+++.++-|-+. ...+..+.+..+   -.++|||.|+.|..+.  ..+       .....+.+.+..+-
T Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~iilVgnK~Dl~~~--~~v-------~~~~~~~~~~~~~~  138 (164)
T d1z2aa1          71 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDD--SCI-------KNEEAEGLAKRLKL  138 (164)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGG--CSS-------CHHHHHHHHHHHTC
T ss_pred             hhccCceEEEEEeccchhhhhhcccccccccccCC---CceEEEeeccCCcccc--eee-------eehhhHHHHHHcCC
Confidence            1357899999999874333222 112333333333   3568899999997543  111       12345677777777


Q ss_pred             eEEEEcC
Q 044972          160 RRVLFDN  166 (307)
Q Consensus       160 R~~~fnN  166 (307)
                      .|+-..-
T Consensus       139 ~~~e~Sa  145 (164)
T d1z2aa1         139 RFYRTSV  145 (164)
T ss_dssp             EEEECBT
T ss_pred             EEEEecc
Confidence            7654333

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.7e-08  Score=80.34  Aligned_cols=111  Identities=12%  Similarity=0.038  Sum_probs=67.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |...... +.+.........+ +|.  .+.+.|||   |-.+-.....           .
T Consensus        10 vG~~~vGKTsLi~~~~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~d~~---g~e~~~~~~~-----------~   72 (175)
T d2f9la1          10 IGDSGVGKSNLLSRFTRNE-FNLESKS-TIGVEFATRSIQV-DGKTIKAQIWDTA---GQERYRRITS-----------A   72 (175)
T ss_dssp             ESSTTSSHHHHHHHHHHSC-CCC---C-CCSCEEEEEEEEE-TTEEEEEEEEECS---SGGGTTCCCH-----------H
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCcccc-cccceeeeEEEEE-CCEEEEEEecccC---CcHHHHHHHH-----------H
Confidence            6999999999999999865 4333222 2222333333445 664  77899999   8533211111           1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHH-HHHHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEE-EGAAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~e-e~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                      ...+.+++|+|+++..+-+-. -...+..+...++++  -+++||.|+.|..+
T Consensus        73 ~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~  123 (175)
T d2f9la1          73 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRH  123 (175)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             HhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeecccc
Confidence            125789999999986322211 223445555555543  37888999999654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=5.4e-08  Score=80.30  Aligned_cols=138  Identities=12%  Similarity=0.002  Sum_probs=61.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |..... ...+..+......+ +|.  .+.++|||   |.....           .....
T Consensus        12 vG~~~vGKTsLi~~l~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~l~i~D~~---G~e~~~-----------~~~~~   74 (173)
T d2fu5c1          12 IGDSGVGKTCVLFRFSEDA-FNSTFI-STIGIDFKIRTIEL-DGKRIKLQIWDTA---GQERFR-----------TITTA   74 (173)
T ss_dssp             ECCCCC-----------------CHH-HHHCEEEEEEEEEE-TTEEEEEEEEEC-----------------------CCT
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCccC-ccccceEEEEEEEE-CCEEEEEEEEECC---CchhhH-----------HHHHH
Confidence            6999999999999999865 433221 22344555556666 775  45669999   843211           11224


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      +..++|++|||+++..+-|-+.. .....+......  -...+||.++.|.........         .....+....+-
T Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~D~~~~~~~~~---------~~~~~~~~~~~~  143 (173)
T d2fu5c1          75 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSK---------ERGEKLALDYGI  143 (173)
T ss_dssp             TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCH---------HHHHHHHHHHTC
T ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccC--CceEEEEEecccchhhcccHH---------HHHHHHHHhcCC
Confidence            46789999999998744333221 122333332222  256788888888655421111         123445556676


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      +|+-.+-++
T Consensus       144 ~~~e~Sa~~  152 (173)
T d2fu5c1         144 KFMETSAKA  152 (173)
T ss_dssp             EEEECCC--
T ss_pred             EEEEEeCCC
Confidence            776544443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.56  E-value=2.2e-07  Score=76.92  Aligned_cols=108  Identities=12%  Similarity=-0.031  Sum_probs=69.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||++|.|.+..... .    ..|.......... .+..+.++|||   |-..-..           ......
T Consensus        23 vG~~~vGKTsLi~~l~~~~~~~-~----~~t~~~~~~~~~~-~~~~~~i~D~~---g~~~~~~-----------~~~~~~   82 (182)
T d1moza_          23 LGLDGAGKTTILYRLQIGEVVT-T----KPTIGFNVETLSY-KNLKLNVWDLG---GQTSIRP-----------YWRCYY   82 (182)
T ss_dssp             EEETTSSHHHHHHHTCCSEEEE-E----CSSTTCCEEEEEE-TTEEEEEEEEC-------CCT-----------TGGGTT
T ss_pred             ECCCCCCHHHHHHHHhcCCCCc-c----ccccceEEEEEee-CCEEEEEEecc---cccccch-----------hHHhhh
Confidence            6999999999999998875322 2    1244444555667 89999999999   7543211           112345


Q ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      .+.|++++|+++.++.+-.+  ...++.......  .-..++||.|+.|...
T Consensus        83 ~~~~~ii~v~d~~d~~s~~~--~~~~l~~~~~~~~~~~~piliv~NK~Dl~~  132 (182)
T d1moza_          83 ADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPG  132 (182)
T ss_dssp             TTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred             ccceeEEEEeeecccccchh--HHHHHHHHHHhhccCCcceEEEEEeecccc
Confidence            68999999999875555443  223344433322  2357888889988644

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.5e-07  Score=77.29  Aligned_cols=133  Identities=14%  Similarity=-0.010  Sum_probs=70.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+.|.. |....   +.+.........+ +|.  .+.+.|||   |...-.        .+.   ..
T Consensus         7 vG~~~vGKTsLi~~~~~~~-~~~~~---~~~~~~~~~~i~~-~~~~~~l~i~D~~---g~e~~~--------~~~---~~   67 (168)
T d2gjsa1           7 LGAPGVGKSALARIFGGVE-DGPEA---EAAGHTYDRSIVV-DGEEASLMVYDIW---EQDGGR--------WLP---GH   67 (168)
T ss_dssp             ECCTTSSHHHHHHHHHTC-------------CEEEEEEEEE-TTEEEEEEEEECC------------------CH---HH
T ss_pred             ECCCCcCHHHHHHHHhCCc-cCCcC---Ceeeeeecceeec-cccccceeeeecc---cccccc--------eec---cc
Confidence            6999999999999999875 43221   1111222334456 775  66789999   753211        111   12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|||+++.++-+-+.. ..+..+....+. ..-.++||.|+.|....  ..+       .....+.+.+..|-
T Consensus        68 ~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~--~~v-------~~~~~~~~~~~~~~  137 (168)
T d2gjsa1          68 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRS--REV-------SVDEGRACAVVFDC  137 (168)
T ss_dssp             HHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGG--CCS-------CHHHHHHHHHHHTS
T ss_pred             chhhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhh--cch-------hHHHHHHHHHhcCC
Confidence            34689999999998744333322 222223333332 22368888999986433  111       11234566666666


Q ss_pred             eEEEE
Q 044972          160 RRVLF  164 (307)
Q Consensus       160 R~~~f  164 (307)
                      .|+-.
T Consensus       138 ~~~e~  142 (168)
T d2gjsa1         138 KFIET  142 (168)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            66543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=3.5e-08  Score=80.72  Aligned_cols=138  Identities=7%  Similarity=-0.026  Sum_probs=74.9

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.+ |..... ...+.........+ +|.  .+.++|||   |-.....-           ..
T Consensus         7 vvG~~~vGKTSli~~l~~~~-~~~~~~-~t~~~~~~~~~i~~-~~~~~~~~i~Dt~---G~~~~~~~-----------~~   69 (166)
T d1g16a_           7 LIGDSGVGKSCLLVRFVEDK-FNPSFI-TTIGIDFKIKTVDI-NGKKVKLQIWDTA---GQERFRTI-----------TT   69 (166)
T ss_dssp             EEESTTSSHHHHHHHHHHCC-CCC--------CCEEEEEEES-SSCEEEEEEECCT---TGGGTSCC-----------CH
T ss_pred             EECCCCcCHHHHHHHHHhCC-CCCccC-CccceeEEEEEEEE-CCEEEEEEEEECC---CchhhHHH-----------HH
Confidence            47999999999999999865 433221 22333444444555 665  45579999   85321110           01


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.+++++|+++.++-|-+... ....+...  ..-....+++.++.|..... .         ..+..+.+.+..+
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~i~~~~k~d~~~~~-~---------~~~~~~~~~~~~~  137 (166)
T d1g16a_          70 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH--ANDEAQLLLVGNKSDMETRV-V---------TADQGEALAKELG  137 (166)
T ss_dssp             HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCTTCC-S---------CHHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcc--ccCcceeeeecchhhhhhhh-h---------hHHHHHHHHHhcC
Confidence            2236799999999987432222211 11122222  22334566777776654431 1         1223556666777


Q ss_pred             CeEEEEcCCC
Q 044972          159 NRRVLFDNKT  168 (307)
Q Consensus       159 ~R~~~fnNk~  168 (307)
                      -.|+-..-++
T Consensus       138 ~~~~~~Sa~~  147 (166)
T d1g16a_         138 IPFIESSAKN  147 (166)
T ss_dssp             CCEEECBTTT
T ss_pred             CeEEEECCCC
Confidence            7776555443

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.3e-07  Score=77.60  Aligned_cols=135  Identities=10%  Similarity=-0.011  Sum_probs=77.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |..... ...+.........+ +|..  +.++|||   |-..           .......
T Consensus        11 vG~~~vGKTsLi~~l~~~~-f~~~~~-~~~~~~~~~~~~~~-~~~~~~l~i~Dt~---G~e~-----------~~~~~~~   73 (171)
T d2ew1a1          11 IGNAGVGKTCLVRRFTQGL-FPPGQG-ATIGVDFMIKTVEI-NGEKVKLQIWDTA---GQER-----------FRSITQS   73 (171)
T ss_dssp             EESTTSSHHHHHHHHHHSS-CCTTCC-CCCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGG-----------GHHHHGG
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCccc-ccccceEEEEEEEE-CCEEEEEEEEECC---Cchh-----------hHHHHHH
Confidence            6999999999999999765 543322 23344445555566 7754  6678999   8321           1112234


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++++|+.+.++-+-+. ...+..+.....  .....|||.|+.|..+....+         ....+.+.+..+-
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ilvgnK~D~~~~~~v~---------~~~~~~~~~~~~~  142 (171)
T d2ew1a1          74 YYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVS---------QQRAEEFSEAQDM  142 (171)
T ss_dssp             GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSC---------HHHHHHHHHHHTC
T ss_pred             HHhccceEEEeeecccchhhhhhhhhhhhhccccc--ccccEEEEEeecccccccchh---------hhHHHHHHHhCCC
Confidence            5678999999999863322221 122222333222  234678888999865431011         1234556666565


Q ss_pred             eEEEEc
Q 044972          160 RRVLFD  165 (307)
Q Consensus       160 R~~~fn  165 (307)
                      .|+-..
T Consensus       143 ~~~~~S  148 (171)
T d2ew1a1         143 YYLETS  148 (171)
T ss_dssp             CEEECC
T ss_pred             EEEEEc
Confidence            664433

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.54  E-value=3e-07  Score=73.04  Aligned_cols=110  Identities=10%  Similarity=-0.046  Sum_probs=66.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|+|||||||++|.|++.+.....     .+.......... ....+.+.|||   |.....   ..        ....
T Consensus         5 lvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~d~~---g~~~~~---~~--------~~~~   64 (160)
T d1r8sa_           5 MVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNISFTVWDVG---GQDKIR---PL--------WRHY   64 (160)
T ss_dssp             EECSTTSSHHHHHHHHHHHCSSCCC-----CCSSCCEEEEEC-SSCEEEEEECC---CCGGGH---HH--------HHHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccc-----cceeeEEEEEee-eeEEEEEecCC---Ccccch---hh--------hhhh
Confidence            4799999999999999987633221     122222334455 77899999999   865321   11        1123


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc--ccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK--KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~--~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+++++|+++.++.+..  .+..++..+.-.  ......+++.+..|....
T Consensus        65 ~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~  116 (160)
T d1r8sa_          65 FQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNA  116 (160)
T ss_dssp             TTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             hccceeEEEEEEecChHHHH--HHHHHHHHHHHhhcccCceEEEEeeccccccc
Confidence            45789999999987443322  223333333322  234567788888776543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.54  E-value=5.4e-07  Score=75.98  Aligned_cols=113  Identities=12%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             CCCCCCCcHHHHHHHHHCCCcccccc-CCCCCCceeEEEEE-----------------------EEeCCeEEEEEeCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKV-GSSEDTKTCEMQRT-----------------------MLKDGQVVNVIDTPAI   57 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~-s~~svT~~c~~~~~-----------------------~~~~Gr~v~VIDTP~~   57 (307)
                      .+|.+++|||||.|.|+|...-.... ...+.|..-.....                       .. ++..+++||||  
T Consensus        10 iiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtP--   86 (195)
T d1kk1a3          10 MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETE-FVRRVSFIDAP--   86 (195)
T ss_dssp             EECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCE-EEEEEEEEECS--
T ss_pred             EEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeec-CceeEeeeccc--
Confidence            46999999999999999853211100 01122221111110                       11 34679999999  


Q ss_pred             CCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           58 ARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        58 ~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                       |-       .+...++.+    +....|++++|+++...+ .+..+..+..+..+ |   ....||+.++.|..+.
T Consensus        87 -Gh-------~~f~~~~~~----~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~---~~~iiv~inK~D~~d~  147 (195)
T d1kk1a3          87 -GH-------EALMTTMLA----GASLMDGAILVIAANEPCPRPQTREHLMALQII-G---QKNIIIAQNKIELVDK  147 (195)
T ss_dssp             -SH-------HHHHHHHHH----CGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T---CCCEEEEEECGGGSCH
T ss_pred             -hh-------hhhhHHhhc----ccccccccccccchhhhhhhhhhHHHHHHHHHh-c---Cccceeeeecccchhh
Confidence             83       344444444    334578999999987443 34344444444432 2   3567888999887654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.7e-07  Score=78.82  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=65.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|.+++.. |.....+. .+.........+ +|.  .+.++|||   |.-+....           ...
T Consensus        12 vG~~~vGKTsli~~l~~~~-~~~~~~~t-~~~~~~~~~i~~-~~~~~~l~i~Dt~---G~e~~~~~-----------~~~   74 (194)
T d2bcgy1          12 IGNSGVGKSCLLLRFSDDT-YTNDYIST-IGVDFKIKTVEL-DGKTVKLQIWDTA---GQERFRTI-----------TSS   74 (194)
T ss_dssp             EESTTSSHHHHHHHHHHCC-CCTTCCCS-SCCCEEEEEEEE-TTEEEEEEEECCT---TTTTTTCC-----------CGG
T ss_pred             ECCCCcCHHHHHHHHhhCC-CCCCcCCc-cceeEEEEEEEE-eeEEEEEEEEECC---CchhhHHH-----------HHH
Confidence            6999999999999999765 54433322 222223333445 553  67779999   85432110           112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHH-HHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGA-AIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~-~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|+|+++.++.+-.... ....+.....  .....|||-|+.|..+.
T Consensus        75 ~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~  126 (194)
T d2bcgy1          75 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDK  126 (194)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT
T ss_pred             HhccCCEEEEEEeCcchhhhhhHhhhhhhhhhccc--CCceEEEEEeccccccc
Confidence            346899999999987443333322 2222332222  23467888888776543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.8e-08  Score=79.69  Aligned_cols=138  Identities=9%  Similarity=-0.024  Sum_probs=80.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....+ ..+.........+ ++  ..+.+.|||   |.........           .
T Consensus         9 vG~~~vGKTsli~r~~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~d~~---g~~~~~~~~~-----------~   71 (173)
T d2a5ja1           9 IGDTGVGKSCLLLQFTDKR-FQPVHDL-TIGVEFGARMVNI-DGKQIKLQIWDTA---GQESFRSITR-----------S   71 (173)
T ss_dssp             ESSTTSSHHHHHHHHHHSC-CCC------CCSSEEEEEEEE-TTEEEEEEEECCT---TGGGTSCCCH-----------H
T ss_pred             ECCCCcCHHHHHHHHhcCC-CCCCccc-ceeeccceeeeee-eeeEEEEEeeccc---CccchhhHHH-----------H
Confidence            6999999999999999876 4333222 2223333333344 44  478999999   8765432111           1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...++|++++|+++.++-+-+. ...+..+....+++  ...|||-|+.|.-...  .+       .+...+.+.+..+-
T Consensus        72 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~~~--~~-------~~~~~~~~a~~~~~  140 (173)
T d2a5ja1          72 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRR--DV-------KREEGEAFAREHGL  140 (173)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGC--CS-------CHHHHHHHHHHHTC
T ss_pred             HhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhhhh--hh-------HHHHHHHHHHHcCC
Confidence            2246899999999874333222 23344455555544  3688888998854321  10       12345666666677


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+-..-++
T Consensus       141 ~~~e~Sa~t  149 (173)
T d2a5ja1         141 IFMETSAKT  149 (173)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEecCCC
Confidence            776555443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.4e-07  Score=74.69  Aligned_cols=137  Identities=11%  Similarity=0.042  Sum_probs=77.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |..... ...+.........+ +|.  .+.+.|||   |..+..    .    +..   .
T Consensus        10 vG~~~vGKTsli~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~i~D~~---g~~~~~----~----~~~---~   72 (166)
T d1z0fa1          10 IGDMGVGKSCLLHQFTEKK-FMADCP-HTIGVEFGTRIIEV-SGQKIKLQIWDTA---GQERFR----A----VTR---S   72 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCSSCT-TSCCCCEEEEEEEE-TTEEEEEEEEECT---TGGGTC----H----HHH---H
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCccc-ccccccceeEEEEE-CCEEEEEEEeccC---CchhHH----H----HHH---H
Confidence            6999999999999999865 543322 23344444455566 776  77789999   854322    1    111   1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|++|+|+++.++-|-+. ...+..+.....+  ....+|+.++.|.-.....         ..+....+.+.-+-
T Consensus        73 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~~---------~~~~~~~~~~~~~~  141 (166)
T d1z0fa1          73 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDV---------TYEEAKQFAEENGL  141 (166)
T ss_dssp             HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCS---------CHHHHHHHHHHTTC
T ss_pred             HhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccc--cceEEEEcccccchhhccc---------HHHHHHHHHHHcCC
Confidence            1236899999999873322111 2223333333222  3457777788874322101         12235566666666


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      +|+-..-+
T Consensus       142 ~~~e~Sak  149 (166)
T d1z0fa1         142 LFLEASAK  149 (166)
T ss_dssp             EEEECCTT
T ss_pred             EEEEEeCC
Confidence            66544433

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=1.5e-07  Score=77.13  Aligned_cols=142  Identities=11%  Similarity=0.017  Sum_probs=74.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.+ |.....+...+... .......++  ..+.+.|||   |-.+..           ....
T Consensus         7 ~vG~~~vGKSsLi~~~~~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~---g~~~~~-----------~~~~   70 (175)
T d1ky3a_           7 ILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFL-TKEVTVDGDKVATMQVWDTA---GQERFQ-----------SLGV   70 (175)
T ss_dssp             EECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCE-EEEECCSSSCCEEEEEECCC------------------------
T ss_pred             EECCCCcCHHHHHHHHHcCC-CCCccCccccccee-eeeeeecCcccccceeeccC---Cchhhh-----------hHHH
Confidence            37999999999999999865 54333222111112 222222122  357789999   853211           1122


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcccc--CCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKV--FDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL  156 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~  156 (307)
                      ....+++++|||+++.++-+-+. ...+..+....+...  ..++|||.|+.|..+.  ..   .+   .....+++.+.
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~--~~---~v---~~~~~~~~~~~  142 (175)
T d1ky3a_          71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--KK---IV---SEKSAQELAKS  142 (175)
T ss_dssp             CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GC---CS---CHHHHHHHHHH
T ss_pred             HHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh--hc---ch---hHHHHHHHHHH
Confidence            34568999999999864333222 222334444444432  3368899999996432  11   01   11245666677


Q ss_pred             cCC-eEEEEcCC
Q 044972          157 CDN-RRVLFDNK  167 (307)
Q Consensus       157 Cg~-R~~~fnNk  167 (307)
                      .+. .|+..+-+
T Consensus       143 ~~~~~~~e~SA~  154 (175)
T d1ky3a_         143 LGDIPLFLTSAK  154 (175)
T ss_dssp             TTSCCEEEEBTT
T ss_pred             cCCCeEEEEeCC
Confidence            653 45544433

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=5.5e-07  Score=74.18  Aligned_cols=111  Identities=15%  Similarity=0.064  Sum_probs=66.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....+.  +.........+ +|.  .+.+.|||   |..+........          
T Consensus        12 vG~~~vGKTsLi~r~~~~~-f~~~~~~t--~~~~~~~~~~~-~~~~~~l~~~d~~---g~~~~~~~~~~~----------   74 (173)
T d2fn4a1          12 VGGGGVGKSALTIQFIQSY-FVSDYDPT--IEDSYTKICSV-DGIPARLDILDTA---GQEEFGAMREQY----------   74 (173)
T ss_dssp             EECTTSSHHHHHHHHHHSS-CCSSCCTT--CCEEEEEEEEE-TTEEEEEEEEECC---CTTTTSCCHHHH----------
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCcccccc--cccceeeEecc-CCeeeeeeccccc---cccccccccchh----------
Confidence            6999999999999999754 65443321  22222334556 776  55569999   876543322211          


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~  132 (307)
                       ..+.|++|||+++.++-|-+.. ..+..+....+.. .-..|||.|+.|...
T Consensus        75 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~  125 (173)
T d2fn4a1          75 -MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLES  125 (173)
T ss_dssp             -HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGGG
T ss_pred             -hccceeeeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechhh
Confidence             1247999999998733222221 1222233333322 236788899999643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.6e-07  Score=75.57  Aligned_cols=134  Identities=13%  Similarity=0.045  Sum_probs=75.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....  +...........+ +|.  .+.+.|||   |.....    ....       .
T Consensus         8 iG~~~vGKTsLi~r~~~~~-f~~~~~--~T~~~~~~~~~~~-~~~~~~l~~~d~~---g~~~~~----~~~~-------~   69 (171)
T d2erxa1           8 FGAGGVGKSSLVLRFVKGT-FRESYI--PTVEDTYRQVISC-DKSICTLQITDTT---GSHQFP----AMQR-------L   69 (171)
T ss_dssp             ECCTTSSHHHHHHHHHTCC-CCSSCC--CCSCEEEEEEEEE-TTEEEEEEEEECC---SCSSCH----HHHH-------H
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCccC--cceeeccccceee-ccccceecccccc---cccccc----cccc-------c
Confidence            6999999999999999865 543322  2122233334455 776  45669999   865421    1111       1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.|+||||+++.++-+-+. ...+..+...-+.....++|||.|+.|....  ..    +   .....+.+.+..+-
T Consensus        70 ~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--~~----v---~~~e~~~~~~~~~~  140 (171)
T d2erxa1          70 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--RE----V---QSSEAEALARTWKC  140 (171)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CC----S---CHHHHHHHHHHHTC
T ss_pred             cccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc--cc----c---cHHHHHHHHHHcCC
Confidence            2236799999999863322222 2223334444444445578999999985432  11    1   11234566676666


Q ss_pred             eEEE
Q 044972          160 RRVL  163 (307)
Q Consensus       160 R~~~  163 (307)
                      .|+-
T Consensus       141 ~~~e  144 (171)
T d2erxa1         141 AFME  144 (171)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3e-07  Score=76.32  Aligned_cols=139  Identities=11%  Similarity=-0.017  Sum_probs=77.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-----------CCeEEEEEeCCCCCCCCCCCcCHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-----------DGQVVNVIDTPAIARLFDSSADFEFVS   71 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-----------~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~   71 (307)
                      +|.+||||||++|.+++.+ |.....+ ..+..........+           ....+.+.|||   |-       +.. 
T Consensus        11 vG~~~vGKTsLi~~l~~~~-~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~---G~-------e~~-   77 (186)
T d2f7sa1          11 LGDSGVGKTTFLYRYTDNK-FNPKFIT-TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTA---GQ-------ERF-   77 (186)
T ss_dssp             ESCTTSSHHHHHHHHHCSC-CCCEEEE-EEEEEEEEEEEEEEC-------CCEEEEEEEEEEEE---SH-------HHH-
T ss_pred             ECCCCcCHHHHHHHHhcCC-CCCccCC-cccceeeEEEEEEecccccccccccceEEeccccCC---cc-------hhh-
Confidence            6999999999999999865 4322211 11111212222220           11368889999   73       211 


Q ss_pred             HHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCCCCCcccHHHhcCCCCCch
Q 044972           72 KEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKV--FDYMIVVFTRGDELEDNDETLEDYLGPECPKP  149 (307)
Q Consensus        72 ~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~  149 (307)
                         .........+++++|+|+++.++-+  -..+..++..+.....  ...++||.|+.|....  ..    +   ....
T Consensus        78 ---~~~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~----v---~~~e  143 (186)
T d2f7sa1          78 ---RSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ--RE----V---NERQ  143 (186)
T ss_dssp             ---HHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CC----S---CHHH
T ss_pred             ---HHHHHHHHhcCCEEEEEEecccccc--ceeeeeccchhhhhccCCCceEEEEeeeccchhh--hc----c---hHHH
Confidence               1112223468999999999863221  1223334444433222  2357788899886432  11    1   1234


Q ss_pred             HHHHHHhcCCeEEEEcCCC
Q 044972          150 LKEILQLCDNRRVLFDNKT  168 (307)
Q Consensus       150 Lk~Li~~Cg~R~~~fnNk~  168 (307)
                      .+++.++++-.|+-.+-++
T Consensus       144 ~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1         144 ARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             HHHHHHHTTCCEEEEBTTT
T ss_pred             HHHHHHHcCCEEEEEeCCC
Confidence            5788888887776665544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=3.7e-07  Score=77.02  Aligned_cols=113  Identities=14%  Similarity=0.042  Sum_probs=64.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|+|||||||++|.+++.+.... .+    |.........+.  .+..+.++|||   |..       .....+.   .
T Consensus         5 ivG~~~~GKTsLl~~l~~~~~~~~-~~----t~~~~~~~~~~~~~~~~~~~~~d~~---g~~-------~~~~~~~---~   66 (207)
T d2fh5b1           5 FVGLCDSGKTLLFVRLLTGQYRDT-QT----SITDSSAIYKVNNNRGNSLTLIDLP---GHE-------SLRFQLL---D   66 (207)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCB-CC----CCSCEEEEEECSSTTCCEEEEEECC---CCH-------HHHHHHH---H
T ss_pred             EECCCCCCHHHHHHHHHcCCCCcc-cC----CeeEEEEEEEEeeeeeeeeeeeecc---ccc-------cccchhh---h
Confidence            479999999999999998764322 21    222222233321  56789999999   742       1211222   2


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhh----ccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLF----GKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~F----G~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.+++++|+++.+ ....-....+.+..++    ...-..+++||.|+.|....
T Consensus        67 ~~~~~~~~~i~v~D~~d-~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          67 RFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhhccccceEEEccc-ccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            23457899999998762 1111111222222222    11223467888899997654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.48  E-value=1.4e-07  Score=80.60  Aligned_cols=70  Identities=16%  Similarity=0.294  Sum_probs=47.1

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-SEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-T~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      ++.+++||||   |-       .+..+++..    +....|++|||+++...+ ..+.+..+..+.. +|   .+++||+
T Consensus        85 ~r~~~iiD~P---GH-------~df~~~~~~----~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~---i~~iIV~  146 (205)
T d2qn6a3          85 LRRISFIDAP---GH-------EVLMATMLS----GAALMDGAILVVAANEPFPQPQTREHFVALGI-IG---VKNLIIV  146 (205)
T ss_dssp             EEEEEEEECS---CH-------HHHHHHHHH----TSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TT---CCCEEEE
T ss_pred             eEEEEEeccc---hH-------HHHHhhhhc----ceeccccccccccccccccchhHHHHHHHHHH-cC---Cceeeec
Confidence            4689999999   74       344444443    345689999999987566 4444545544443 33   3578999


Q ss_pred             EecCCCCCC
Q 044972          125 FTRGDELED  133 (307)
Q Consensus       125 fT~~D~L~~  133 (307)
                      .|++|....
T Consensus       147 vNK~Dl~~~  155 (205)
T d2qn6a3         147 QNKVDVVSK  155 (205)
T ss_dssp             EECGGGSCH
T ss_pred             cccCCCccc
Confidence            999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.2e-08  Score=79.35  Aligned_cols=110  Identities=11%  Similarity=0.031  Sum_probs=63.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....+ ..+.......... ++.  .+.+.|||   |.-..    .       .....
T Consensus        11 vG~~~vGKTsll~~~~~~~-~~~~~~~-t~~~~~~~~~~~~-~~~~~~~~i~D~~---G~~~~----~-------~~~~~   73 (174)
T d2bmea1          11 IGNAGTGKSCLLHQFIEKK-FKDDSNH-TIGVEFGSKIINV-GGKYVKLQIWDTA---GQERF----R-------SVTRS   73 (174)
T ss_dssp             EESTTSSHHHHHHHHHHSS-CCTTCCC-CSEEEEEEEEEEE-TTEEEEEEEEEEC---CSGGG----H-------HHHHT
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCccccc-ccccceeeEEEEe-cCcceeEEEEECC---Cchhh----h-------hhHHH
Confidence            6999999999999998765 5433221 2222222222233 443  67889999   84321    1       11234


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ...+.+++++|+++.++-+-.. ...+..+....++  -..++||.|+.|..
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~  123 (174)
T d2bmea1          74 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLD  123 (174)
T ss_dssp             TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGG
T ss_pred             HhhhCCEEEEEEecccchhHHHHhhhhcccccccCC--ceEEEEEEeccccc
Confidence            5678999999999863211111 1222223333332  35788889998853

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.46  E-value=4.3e-07  Score=74.56  Aligned_cols=109  Identities=10%  Similarity=-0.020  Sum_probs=70.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      ++|.+||||||++|.+.+..... .    ..|.......... .+..+.++|||   |.....           .-....
T Consensus        17 lvG~~~vGKTSli~rl~~~~~~~-~----~~t~~~~~~~~~~-~~~~~~i~D~~---g~~~~~-----------~~~~~~   76 (173)
T d1e0sa_          17 MLGLDAAGKTTILYKLKLGQSVT-T----IPTVGFNVETVTY-KNVKFNVWDVG---GQDKIR-----------PLWRHY   76 (173)
T ss_dssp             EEEETTSSHHHHHHHTTCCCCEE-E----EEETTEEEEEEEE-TTEEEEEEEES---CCGGGH-----------HHHGGG
T ss_pred             EECCCCCCHHHHHHHHhcCCCCC-c----cceeeeeEEEeec-cceeeEEecCC---Ccchhh-----------hHHHhh
Confidence            47999999999999998765322 1    2244444555566 88899999999   864321           112345


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      ..+++++++|+++. .... -..+..++.......  .-.+.+||.|+.|...
T Consensus        77 ~~~~~~ii~v~D~s-~~~~-~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~  127 (173)
T d1e0sa_          77 YTGTQGLIFVVDCA-DRDR-IDEARQELHRIINDREMRDAIILIFANKQDLPD  127 (173)
T ss_dssp             TTTCCEEEEEEETT-CGGG-HHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred             hcccceEEEEEecc-cchh-HHHHHHHHHHHhhhcccccceeeeeeecccccc
Confidence            67999999999987 3322 122333444433322  2457788888888544

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.2e-07  Score=75.29  Aligned_cols=133  Identities=13%  Similarity=0.017  Sum_probs=77.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.+++.. |.....   .|.... ...... +|.  .+.++|||   |.....    ..    .    
T Consensus         8 vG~~~vGKTsli~r~~~~~-f~~~~~---pTi~~~~~~~~~~-~~~~~~l~i~D~~---g~~~~~----~~----~----   67 (168)
T d2atva1           8 FGRAGVGKSALVVRFLTKR-FIWEYD---PTLESTYRHQATI-DDEVVSMEILDTA---GQEDTI----QR----E----   67 (168)
T ss_dssp             ECCTTSSHHHHHHHHHHSC-CCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECC---CCCCCH----HH----H----
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCccC---Cceeccccccccc-cccceEEEEeecc---cccccc----cc----h----
Confidence            6999999999999999854 654322   233332 223344 774  67789999   875421    11    0    


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHH-HHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAI-HSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l-~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....++|+++||+++.++-+-...... ..+....+ .-..+.+||.|+.|.-..  ..    +   ..+..+.+.+..+
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~--r~----V---~~~e~~~~a~~~~  137 (168)
T d2atva1          68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHS--RQ----V---STEEGEKLATELA  137 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGG--CC----S---CHHHHHHHHHHHT
T ss_pred             hhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhh--cc----C---cHHHHHHHHHHhC
Confidence            112368999999998744333332222 22222222 234578999999985332  11    1   1234566777777


Q ss_pred             CeEEEEc
Q 044972          159 NRRVLFD  165 (307)
Q Consensus       159 ~R~~~fn  165 (307)
                      -.|+--.
T Consensus       138 ~~~~e~S  144 (168)
T d2atva1         138 CAFYECS  144 (168)
T ss_dssp             SEEEECC
T ss_pred             CeEEEEc
Confidence            7664333

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=7.3e-07  Score=70.29  Aligned_cols=110  Identities=6%  Similarity=-0.121  Sum_probs=64.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|+|||||||++|.|+|.+....     ..|..-....... .+..+.+.||+   |......           .....
T Consensus         5 liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~-----------~~~~~   64 (166)
T d2qtvb1           5 FLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLG---GHIQARR-----------LWKDY   64 (166)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEECC-TTCCEEEEECC---CSGGGGG-----------GGGGG
T ss_pred             EECCCCCCHHHHHHHHhCCCCCee-----eceeeEeEEEecc-CCeeEEEEeec---cchhhhh-----------hHhhh
Confidence            479999999999999999874322     2233222333444 67789999999   6532211           11234


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~  132 (307)
                      ....+++++|+...++...... ............ .-..++++.++.|...
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~~~k~d~~~  115 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPN  115 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCTTTTTCCEEEEEECTTSSS
T ss_pred             hhheeeeeeeccccchhhhhhh-hHHHHhhhhhhccCCceEEEEeccccccc
Confidence            5678999999988633332222 111222222222 3345677778777654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.2e-06  Score=72.11  Aligned_cols=112  Identities=20%  Similarity=0.038  Sum_probs=64.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCc-cccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRA-FKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~-F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.+.+... +.+...  +...........+ +|..  +.++|+|   |...    .+.   .+   ..
T Consensus         9 vG~~~vGKTsLi~~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~~~d~~---~~~g----~e~---~~---~~   72 (172)
T d2g3ya1           9 IGEQGVGKSTLANIFAGVHDSMDSDCE--VLGEDTYERTLMV-DGESATIILLDMW---ENKG----ENE---WL---HD   72 (172)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCT---TTTH----HHH---HH---HH
T ss_pred             ECCCCcCHHHHHHHHHhCcCCcccccc--ceeeecceeeecc-CCceeeeeeeccc---cccc----ccc---cc---cc
Confidence            69999999999999998653 332221  1111222233445 7764  5778888   5321    111   12   12


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      .+..+.|++|||+++.++-+-+  .+..++..+....  ....+|||.|+.|...
T Consensus        73 ~~~~~~~~~ilvfd~t~~~s~~--~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~  125 (172)
T d2g3ya1          73 HCMQVGDAYLIVYSITDRASFE--KASELRIQLRRARQTEDIPIILVGNKSDLVR  125 (172)
T ss_dssp             CCCCCCSEEEEEEETTCHHHHH--HHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred             ccccccceeeeeecccccchhh--hhhhhhhhhhhccccCCceEEEEeccccccc
Confidence            3567899999999987332222  2233333333221  2357899999998543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=3.3e-07  Score=74.94  Aligned_cols=139  Identities=14%  Similarity=0.036  Sum_probs=80.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCcee--EEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC--EMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c--~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      +|.+||||||+++.+++.+ |.....   .|...  ....... +|  ..+.+.|||   |......    +    .   
T Consensus         9 vG~~~vGKTsLi~~~~~~~-f~~~~~---~t~~~~~~~~~i~~-~~~~~~l~i~d~~---g~~~~~~----~----~---   69 (170)
T d1ek0a_           9 LGEAAVGKSSIVLRFVSND-FAENKE---PTIGAAFLTQRVTI-NEHTVKFEIWDTA---GQERFAS----L----A---   69 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCTTCC---CCSSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG----G----H---
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCcccc---ccccceeecccccc-ccccccccccccC---CchhHHH----H----H---
Confidence            6999999999999999876 433222   23222  2223344 55  378999999   8653221    1    1   


Q ss_pred             HhcCCCCeEEEEEEeCCCCCCHHHHHH-HHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           79 GMAKDGIHAVLIVFSVRNRFSEEEGAA-IHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        79 ~ls~pGpha~LLVl~~~~RfT~ee~~~-l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      .....++|++|||+++.++-+-+.... ...+...  .......+++.++.|.......   ..+   .....+++.+..
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~v~nk~d~~~~~~~---~~v---~~~~~~~~~~~~  141 (170)
T d1ek0a_          70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ--ASKDIIIALVGNKIDMLQEGGE---RKV---AREEGEKLAEEK  141 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEECGGGGGSSCC---CCS---CHHHHHHHHHHH
T ss_pred             HHHHhccceEEEEEeCCcccchhhhhhhhhhhccc--cccccceeeeecccccccccch---hhh---hHHHHHHHHHHc
Confidence            123458999999999874433332221 1112222  2235678888898886543100   011   123456778888


Q ss_pred             CCeEEEEcCCC
Q 044972          158 DNRRVLFDNKT  168 (307)
Q Consensus       158 g~R~~~fnNk~  168 (307)
                      +..|+-..-++
T Consensus       142 ~~~~~e~Sak~  152 (170)
T d1ek0a_         142 GLLFFETSAKT  152 (170)
T ss_dssp             TCEEEECCTTT
T ss_pred             CCEEEEecCCC
Confidence            87776555443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.43  E-value=1.6e-06  Score=68.94  Aligned_cols=111  Identities=12%  Similarity=-0.087  Sum_probs=68.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.|||||||++|.|++.+...+     ..|.......... ++..+.+.|+|   |.......           ....
T Consensus        10 ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~-----------~~~~   69 (169)
T d1upta_          10 ILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLG---GLTSIRPY-----------WRCY   69 (169)
T ss_dssp             EECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEEC---CCGGGGGG-----------GGGG
T ss_pred             EECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeecc---cccccccc-----------chhh
Confidence            479999999999999999864322     2244344445556 88999999999   76432211           1123


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~  133 (307)
                      ....|++++++.+....+... ..-......... ......+|+.|..|....
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~  121 (169)
T d1upta_          70 YSNTDAVIYVVDSCDRDRIGI-SKSELVAMLEEEELRKAILVVFANKQDMEQA  121 (169)
T ss_dssp             CTTCSEEEEEEETTCCTTHHH-HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             hhhhhhhhhhhhhhhcchhhh-ccchhhhhhhhhccccceEEEEEeecccccc
Confidence            456789999988762332222 222222222222 234577888898887654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.8e-07  Score=76.05  Aligned_cols=137  Identities=12%  Similarity=0.014  Sum_probs=79.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |..... .+++.......... +|.  .+.+.|||   |......        +   ...
T Consensus         6 vG~~~vGKTsLi~r~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~d~~---g~~~~~~--------~---~~~   68 (164)
T d1yzqa1           6 LGEQSVGKTSLITRFMYDS-FDNTYQ-ATIGIDFLSKTMYL-EDRTIRLQLWDTA---GQERFRS--------L---IPS   68 (164)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCSSCC-CCCSEEEEEEEEEC-SSCEEEEEEEEEC---CSGGGGG--------G---HHH
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCccc-cceeeeccceeecc-CCCceeeeecccC---Ccchhcc--------c---hHH
Confidence            6999999999999999875 543322 22333333333344 554  67899999   8653221        1   112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+++++|||+++.++.+-+. ...+..+...+++  .-.++||-|+.|..+....+.         ...+.+.+..+-
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~~~~---------~~~~~~~~~~~~  137 (164)
T d1yzqa1          69 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSI---------EEGERKAKELNV  137 (164)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSCH---------HHHHHHHHHTTC
T ss_pred             HhhccceEEEeeccccccchhhhHhhHHHHHHhcCC--CceEEEEecccchhhhhhhhH---------HHHHHHHHHcCC
Confidence            3357999999999874433332 2233334444444  345788889888643311111         234556666666


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      .|+-.+-+
T Consensus       138 ~~~e~SAk  145 (164)
T d1yzqa1         138 MFIETSAK  145 (164)
T ss_dssp             EEEECCTT
T ss_pred             EEEEecCC
Confidence            66544433

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-06  Score=70.44  Aligned_cols=136  Identities=13%  Similarity=0.042  Sum_probs=74.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....+  ...........+ +|.  .+.+.|||   |..+...    ...       .
T Consensus        11 vG~~~vGKTsLi~r~~~~~-f~~~~~~--t~~~~~~~~~~~-~~~~~~~~~~d~~---g~~~~~~----~~~-------~   72 (171)
T d2erya1          11 VGGGGVGKSALTIQFIQSY-FVTDYDP--TIEDSYTKQCVI-DDRAARLDILDTA---GQEEFGA----MRE-------Q   72 (171)
T ss_dssp             EECTTSSHHHHHHHHHHSC-CCSSCCT--TCCEEEEEEEEE-TTEEEEEEEEECC-------CCH----HHH-------H
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCcccCc--ccccceeeeeee-ccccccccccccc---ccccccc----ccc-------c
Confidence            6999999999999999764 5443322  122233334455 775  68899999   8765321    111       1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...++|++|||+++.++-|-+.. ..+..+....+.. ....|||.|+.|.-...  .    +   .......+.+..+-
T Consensus        73 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~~--~----v---~~~~~~~~~~~~~~  142 (171)
T d2erya1          73 YMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQR--Q----V---TQEEGQQLARQLKV  142 (171)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTSC--S----S---CHHHHHHHHHHTTC
T ss_pred             cccccceEEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhhc--c----c---hHHHHHHHHHHcCC
Confidence            11257999999998733222221 1122233333322 34577889998864331  1    1   11245667777777


Q ss_pred             eEEEEcC
Q 044972          160 RRVLFDN  166 (307)
Q Consensus       160 R~~~fnN  166 (307)
                      .|+-..-
T Consensus       143 ~~~e~Sa  149 (171)
T d2erya1         143 TYMEASA  149 (171)
T ss_dssp             EEEECBT
T ss_pred             EEEEEcC
Confidence            7754343

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-07  Score=77.00  Aligned_cols=134  Identities=13%  Similarity=-0.054  Sum_probs=73.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEE--EEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEM--QRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKC   77 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~--~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kc   77 (307)
                      .+|.+||||||++|.+++.+ |....   ..|.....  ..... +|  ..+.+.|||   |-.....           .
T Consensus         8 vvG~~~vGKTsli~~~~~~~-f~~~~---~~Ti~~~~~~~~~~~-~~~~~~l~i~D~~---g~~~~~~-----------~   68 (170)
T d1i2ma_           8 LVGDGGTGKTTFVKRHLTGE-FEKKY---VATLGVEVHPLVFHT-NRGPIKFNVWDTA---GQEKFGG-----------L   68 (170)
T ss_dssp             EEECTTSSHHHHHHTTC------CCE---EEETTEEEEEEEECB-TTCCEEEEEEECT---THHHHSS-----------C
T ss_pred             EECCCCcCHHHHHHHHHhCC-CCccc---ccceecccccccccc-ccccccccccccc---cccccce-----------e
Confidence            36999999999999998765 54322   12322322  22233 55  478999999   7422110           1


Q ss_pred             HHhcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHh
Q 044972           78 IGMAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQL  156 (307)
Q Consensus        78 v~ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~  156 (307)
                      ......+.|+++||+++.++-|-+. ...+..+....   -.-+++||.|+.|....  ...         .........
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--~~~---------~~~~~~~~~  134 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDR--KVK---------AKSIVFHRK  134 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH---CSCCEEEEEECCCCSCS--CCT---------TTSHHHHSS
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhcc---CCCceeeecchhhhhhh--hhh---------hHHHHHHHH
Confidence            1234568999999999975433222 22223333322   24578999999996443  111         112344555


Q ss_pred             cCCeEEEEcCCC
Q 044972          157 CDNRRVLFDNKT  168 (307)
Q Consensus       157 Cg~R~~~fnNk~  168 (307)
                      .+-+|+-..-++
T Consensus       135 ~~~~~~e~Sak~  146 (170)
T d1i2ma_         135 KNLQYYDISAKS  146 (170)
T ss_dssp             CSSEEEEEBTTT
T ss_pred             cCCEEEEEeCCC
Confidence            566775555443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=9.8e-07  Score=79.81  Aligned_cols=132  Identities=18%  Similarity=0.185  Sum_probs=85.8

Q ss_pred             CCCCCCcHHHHHHHHH---CC-Ccc--------ccc----cCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSIL---GR-RAF--------KSK----VGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~-~~F--------~s~----~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|..|+|||||..+||   |. +..        .+.    ....+.|-.+......| +|..+++||||   |..|-.. 
T Consensus        12 ~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtP---G~~dF~~-   86 (276)
T d2bv3a2          12 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAP---GHVDFTI-   86 (276)
T ss_dssp             EECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCC---SSSSCST-
T ss_pred             EeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCC---chhhhHH-
Confidence            6899999999999997   21 000        000    00113344455677889 99999999999   8877532 


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPEC  146 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~  146 (307)
                            ++..++.    -.|+.|||+++......+...+++....     .--..|+++++.|....   .+..      
T Consensus        87 ------e~~~~l~----~~D~avlVvda~~Gv~~~T~~~w~~a~~-----~~lP~i~fINKmDr~~a---d~~~------  142 (276)
T d2bv3a2          87 ------EVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEK-----YKVPRIAFANKMDKTGA---DLWL------  142 (276)
T ss_dssp             ------THHHHHH----HCCEEEEEEETTTSSCHHHHHHHHHHHT-----TTCCEEEEEECTTSTTC---CHHH------
T ss_pred             ------HHHHHHH----hhhheEEeccccCCcchhHHHHHHHHHH-----cCCCEEEEEeccccccc---ccch------
Confidence                  2333333    3678888888876788888888777775     35678888999987654   2221      


Q ss_pred             CchHHHHHHhcCCeEEEEc
Q 044972          147 PKPLKEILQLCDNRRVLFD  165 (307)
Q Consensus       147 ~~~Lk~Li~~Cg~R~~~fn  165 (307)
                        .+.++-+..|.+++.++
T Consensus       143 --~l~ei~~~l~~~~vp~~  159 (276)
T d2bv3a2         143 --VIRTMQERLGARPVVMQ  159 (276)
T ss_dssp             --HHHHHHHTTCCCEEECE
T ss_pred             --hHHHHHHHhCCCeEEEE
Confidence              24445555666665554

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=2.4e-07  Score=76.92  Aligned_cols=113  Identities=12%  Similarity=-0.027  Sum_probs=64.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....+ ++........... .+  ..+.+.|||   |..+.....           ..
T Consensus         8 vG~~~vGKSSLi~~l~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~~~~~d~~---g~~~~~~~~-----------~~   70 (184)
T d1vg8a_           8 LGDSGVGKTSLMNQYVNKK-FSNQYKA-TIGADFLTKEVMV-DDRLVTMQIWDTA---GQERFQSLG-----------VA   70 (184)
T ss_dssp             ECCTTSSHHHHHHHHHHSC-CCSSCCC-CCSEEEEEEEEES-SSCEEEEEEEEEC---SSGGGSCSC-----------CG
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCCcCC-ccceeeeeeeeee-CCceEEEEeeecC---Ccccccccc-----------cc
Confidence            6999999999999999865 5433221 1212222223333 43  377789999   854322111           12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccC--CeEEEEEecCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVF--DYMIVVFTRGDELE  132 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~--~~~IVLfT~~D~L~  132 (307)
                      .....|++|+|++..++-+-.. ...+..+.........  -.+|||.|+.|..+
T Consensus        71 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~  125 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  125 (184)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             cccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc
Confidence            3457899999999862211111 1223334444333222  26899999999543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.38  E-value=1.5e-06  Score=78.21  Aligned_cols=109  Identities=20%  Similarity=0.095  Sum_probs=75.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc------C----------CCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV------G----------SSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~------s----------~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|..|+||||+...||.........      +          ....|-........| +|+.+++||||   |..|-   
T Consensus         8 iGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtP---Gh~dF---   80 (267)
T d2dy1a2           8 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAP---GYGDF---   80 (267)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECC---CSGGG---
T ss_pred             EcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccC---chhhh---
Confidence            5899999999999997322111000      0          012233334556789 99999999999   98762   


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           67 FEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        67 ~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                          ..++..++..    .|+.|+|+++......+....++...+.     -...+|++++.|..
T Consensus        81 ----~~e~~~al~~----~D~avlvvda~~Gv~~~t~~~~~~~~~~-----~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 ----VGEIRGALEA----ADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG  132 (267)
T ss_dssp             ----HHHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             ----hhhhhhhhcc----cCceEEEeeccCCccchhHHHHHhhhhc-----cccccccccccccc
Confidence                2344444443    5788999998768888888888877763     45678888999973

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=2.8e-07  Score=74.72  Aligned_cols=136  Identities=13%  Similarity=-0.021  Sum_probs=75.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEe-CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLK-DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~-~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      +|.+||||||++|.+++.+ |.........+..+ .....+. ....+.+.|+|   |......       ...   ...
T Consensus         8 iG~~~vGKTsLl~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~---~~~   72 (165)
T d1z06a1           8 IGDSNVGKTCLTYRFCAGR-FPDRTEATIGVDFR-ERAVDIDGERIKIQLWDTA---GQERFRK-------SMV---QHY   72 (165)
T ss_dssp             ECCTTSSHHHHHHHHHHSS-CCSSCCCCCSCCEE-EEEEEETTEEEEEEEEECC---CSHHHHT-------TTH---HHH
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCccCcccccccc-eeeeeeeccceEEEEEecc---Cchhhcc-------ccc---eee
Confidence            6999999999999999765 43332222212222 2222330 23478899999   7532110       001   122


Q ss_pred             CCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCCe
Q 044972           82 KDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDNR  160 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~R  160 (307)
                      ..+.|++|||+++.++-|-+. ...+..+.+.++. -.-+++||.|+.|..+..  .    +   ..+..+.+.+..+-.
T Consensus        73 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~--~----v---~~~~~~~~~~~~~~~  142 (165)
T d1z06a1          73 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAI--Q----V---PTDLAQKFADTHSMP  142 (165)
T ss_dssp             HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGC--C----S---CHHHHHHHHHHTTCC
T ss_pred             ecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhcc--c----h---hHHHHHHHHHHCCCE
Confidence            357999999999874333222 1233334443332 134789999999865431  1    1   112345677777766


Q ss_pred             EEE
Q 044972          161 RVL  163 (307)
Q Consensus       161 ~~~  163 (307)
                      |+-
T Consensus       143 ~~e  145 (165)
T d1z06a1         143 LFE  145 (165)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.2e-06  Score=71.88  Aligned_cols=138  Identities=17%  Similarity=0.059  Sum_probs=81.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      .+|.+||||||++|.+++.. |.....+ ++...+. ....+ ++.  .+.++|||   |-.........          
T Consensus         9 lvG~~~vGKTsll~~~~~~~-~~~~~~~-t~~~~~~-~~~~~-~~~~~~~~i~d~~---g~~~~~~~~~~----------   71 (169)
T d1x1ra1           9 VVGDGGVGKSALTIQFFQKI-FVPDYDP-TIEDSYL-KHTEI-DNQWAILDVLDTA---GQEEFSAMREQ----------   71 (169)
T ss_dssp             EECCTTSSHHHHHHHHHHSS-CCTTCCT-TCCEEEE-EEEEE-TTEEEEEEEEECC---SCGGGCSSHHH----------
T ss_pred             EECCCCcCHHHHHHHHHhCC-CCcccCc-ceeeccc-ccccc-ccccccccccccc---cccccccchhh----------
Confidence            47999999999999999864 5433222 2222222 23345 664  66699999   86543222111          


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                       ...+.|++|||+++.++-|-+. ...+..+.+.++. .-.+.||+.|+.|.....  .+       ..+..+++.+..+
T Consensus        72 -~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~--~v-------~~e~~~~~~~~~~  140 (169)
T d1x1ra1          72 -YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLR--KV-------TRDQGKEMATKYN  140 (169)
T ss_dssp             -HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTC--CS-------CHHHHHHHHHHHT
T ss_pred             -hhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhc--ee-------ehhhHHHHHHHcC
Confidence             1246899999999874333222 2233444444433 234578889999976542  11       1223566777777


Q ss_pred             CeEEEEcCC
Q 044972          159 NRRVLFDNK  167 (307)
Q Consensus       159 ~R~~~fnNk  167 (307)
                      -.|+-..-+
T Consensus       141 ~~~~e~Sak  149 (169)
T d1x1ra1         141 IPYIETSAK  149 (169)
T ss_dssp             CCEEEEBCS
T ss_pred             CEEEEEcCC
Confidence            777665544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7.8e-07  Score=72.44  Aligned_cols=134  Identities=10%  Similarity=0.010  Sum_probs=74.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....  +...........+ ++.  .+.+.|||   |.....    ....       .
T Consensus         9 vG~~~vGKTsLi~r~~~~~-f~~~~~--~t~~~~~~~~~~~-~~~~~~l~~~d~~---g~~~~~----~~~~-------~   70 (167)
T d1kaoa_           9 LGSGGVGKSALTVQFVTGT-FIEKYD--PTIEDFYRKEIEV-DSSPSVLEILDTA---GTEQFA----SMRD-------L   70 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSC-CCSCCC--TTCCEEEEEEEEE-TTEEEEEEEEECC---CTTCCH----HHHH-------H
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCccC--Cceeeeeeeeeec-CcceEeeccccCC---Cccccc----cchH-------H
Confidence            6999999999999999865 543322  2112222233445 664  66779999   854321    1111       1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ...+.+++|+|+++.++-+-..  ...++..+....  .-.+++||.|+.|.....  .+       .....+.+.+..+
T Consensus        71 ~~~~a~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~--~~-------~~~~~~~~~~~~~  139 (167)
T d1kaoa_          71 YIKNGQGFILVYSLVNQQSFQD--IKPMRDQIIRVKRYEKVPVILVGNKVDLESER--EV-------SSSEGRALAEEWG  139 (167)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHH--HHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC--CS-------CHHHHHHHHHHHT
T ss_pred             Hhhcccceeeeeeecchhhhhh--hhchhhhhhhhccCCCCCEEEEEEccchhhcc--cc-------hHHHHHHHHHHcC
Confidence            2246799999999874332222  333333333222  223588999999865431  11       1123345555556


Q ss_pred             CeEEEEc
Q 044972          159 NRRVLFD  165 (307)
Q Consensus       159 ~R~~~fn  165 (307)
                      -.|+-..
T Consensus       140 ~~~~e~S  146 (167)
T d1kaoa_         140 CPFMETS  146 (167)
T ss_dssp             SCEEEEC
T ss_pred             CeEEEEC
Confidence            5665443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.9e-06  Score=70.00  Aligned_cols=132  Identities=14%  Similarity=0.027  Sum_probs=76.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.+++.. |.....   .|.... .....+ +|.  .+.+.|||   |......-.           .
T Consensus        10 iG~~~vGKTsLl~~~~~~~-f~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~d~~---g~~~~~~~~-----------~   70 (167)
T d1xtqa1          10 LGYRSVGKSSLTIQFVEGQ-FVDSYD---PTIENTFTKLITV-NGQEYHLQLVDTA---GQDEYSIFP-----------Q   70 (167)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCSCCC---SSCCEEEEEEEEE-TTEEEEEEEEECC---CCCTTCCCC-----------G
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCcccC---cceecccceEEec-CcEEEEeeecccc---ccccccccc-----------c
Confidence            5999999999999998754 643322   222222 234456 775  55679999   765432110           1


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                      ....+.|++|||+++.++-|-+. ...+..+...+|.. --.++||.|+.|.....  .    +   ..+..+.+.+..+
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r--~----v---~~~~~~~~a~~~~  140 (167)
T d1xtqa1          71 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMER--V----I---SYEEGKALAESWN  140 (167)
T ss_dssp             GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGC--C----S---CHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeecccccccccc--c----h---hHHHHHHHHHHcC
Confidence            23568999999999873322222 11223344444432 24688999999864331  1    1   1123456666666


Q ss_pred             CeEEE
Q 044972          159 NRRVL  163 (307)
Q Consensus       159 ~R~~~  163 (307)
                      -.|+-
T Consensus       141 ~~~~e  145 (167)
T d1xtqa1         141 AAFLE  145 (167)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            66643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.6e-06  Score=70.89  Aligned_cols=137  Identities=12%  Similarity=-0.001  Sum_probs=78.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||+++.+++.+ |.....+ +.+.........+ ++  ..+.+.|||   |-.....        +.   ..
T Consensus        12 vG~~~vGKTsLi~~l~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~~~~~d~~---g~~~~~~--------~~---~~   74 (170)
T d1r2qa_          12 LGESAVGKSSLVLRFVKGQ-FHEFQES-TIGAAFLTQTVCL-DDTTVKFEIWDTA---GQERYHS--------LA---PM   74 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCTTCCC-CSSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGG--------GH---HH
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCccccc-ccccccccceeec-cceEEEEEeccCC---Cchhhhh--------hH---HH
Confidence            6999999999999999764 5544332 2222222233333 44  367788999   8543211        11   12


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...+.+++|||+++.++-+-+. ......+...++++  -.++||.|+.|.......+         .+..+.+.+..+-
T Consensus        75 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~---------~e~~~~~~~~~~~  143 (170)
T d1r2qa_          75 YYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVD---------FQEAQSYADDNSL  143 (170)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred             HhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeeccccccccccccc---------HHHHHHHHHhcCC
Confidence            3368999999999874333222 22333344444443  4678889999864331111         1235666666666


Q ss_pred             eEEEEcCC
Q 044972          160 RRVLFDNK  167 (307)
Q Consensus       160 R~~~fnNk  167 (307)
                      .|+-..-+
T Consensus       144 ~~~e~SAk  151 (170)
T d1r2qa_         144 LFMETSAK  151 (170)
T ss_dssp             EEEECCTT
T ss_pred             EEEEeeCC
Confidence            77654443

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.6e-07  Score=74.67  Aligned_cols=109  Identities=17%  Similarity=0.047  Sum_probs=65.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCcee-EEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTC-EMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c-~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.+++.. |.....   .|-.. ......+ ++.  .+.+.|||   |......           +..
T Consensus         8 vG~~~vGKTsLi~~~~~~~-f~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~D~~---g~~~~~~-----------~~~   68 (177)
T d1kmqa_           8 VGDGACGKTCLLIVNSKDQ-FPEVYV---PTVFENYVADIEV-DGKQVELALWDTA---GLEDYDR-----------LRP   68 (177)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCSSCC---CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGTT-----------TGG
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCCcC---Cceeeeccccccc-cccceeeeccccC---ccchhcc-----------cch
Confidence            5999999999999999765 543322   12211 1222334 554  68899999   8642211           122


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|||+++.++-|=+.  ...+..+.. ++++  -.++||.|+.|....
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~--~piilvgnK~Dl~~~  121 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPN--VPIILVGNKKDLRND  121 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTT--SCEEEEEECGGGTTC
T ss_pred             hhcccchhhhhhcccchhHHHHHHHHHHHHHHHH-hCCC--CceEEeeecccccch
Confidence            44678999999999874322221  122232332 3332  468888999997765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-06  Score=71.49  Aligned_cols=137  Identities=12%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|++||||||++|++++.. |.....+ .+..... ..... +|.  .+.+.|||   |....    .....       .
T Consensus         9 iG~~~vGKTsli~~l~~~~-~~~~~~~-~~~~~~~-~~~~~-~~~~~~l~~~d~~---~~~~~----~~~~~-------~   70 (166)
T d1ctqa_           9 VGAGGVGKSALTIQLIQNH-FVDEYDP-TIEDSYR-KQVVI-DGETCLLDILDTA---GQEEY----SAMRD-------Q   70 (166)
T ss_dssp             EESTTSSHHHHHHHHHHCC-CCCSCCC-CSEEEEE-EEEEE-TTEEEEEEEEEEC---CCGGG----HHHHH-------H
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCccCC-ccceeec-cceee-eceeeeeeeeecc---Ccccc----ccchh-------h
Confidence            6999999999999999865 5433221 1111122 22233 554  56677888   75432    11111       1


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...++|++++|+++.++-+-+. ...+..+....+.. -.++|||.|+.|..... .+         .+..+.+.+..+-
T Consensus        71 ~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~  139 (166)
T d1ctqa_          71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLAART-VE---------SRQAQDLARSYGI  139 (166)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCSCCC-SC---------HHHHHHHHHHHTC
T ss_pred             hhhcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEeccccccccc-cc---------HHHHHHHHHHhCC
Confidence            1236789999999874433332 22333344433322 34689999999864331 11         1234556666665


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+-..-++
T Consensus       140 ~~~e~Sak~  148 (166)
T d1ctqa_         140 PYIETSAKT  148 (166)
T ss_dssp             CEEECCTTT
T ss_pred             eEEEEcCCC
Confidence            665444433

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.1e-06  Score=73.15  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeE--EEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQV--VNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~--v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |....   +.+...-.....+ +|..  +.|.|||   |-...    .        .   
T Consensus        11 lG~~~vGKTsLi~~~~~~~-f~~~~---~t~~~~~~~~i~v-~~~~~~l~i~Dt~---g~~~~----~--------~---   67 (175)
T d2bmja1          11 LGDARSGKSSLIHRFLTGS-YQVLE---KTESEQYKKEMLV-DGQTHLVLIREEA---GAPDA----K--------F---   67 (175)
T ss_dssp             ECCTTTTHHHHHHHHHHSC-CCCCC---CSSCEEEEEEEEE-TTEEEEEEEEECS---SCCCH----H--------H---
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCcC---CccceeEEEEeec-CceEEEEEEeecc---ccccc----c--------c---
Confidence            6999999999999999876 64322   1122222334456 8864  6778999   85431    1        1   


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCC-eEEEEEecCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFD-YMIVVFTRGD  129 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~-~~IVLfT~~D  129 (307)
                       ..+.|+||||+++.++-|-+. .....++..+-...... +++||.++.|
T Consensus        68 -~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d  117 (175)
T d2bmja1          68 -SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR  117 (175)
T ss_dssp             -HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTT
T ss_pred             -ccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecC
Confidence             125799999999874433222 22233444443333333 4566666554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.8e-06  Score=70.28  Aligned_cols=138  Identities=10%  Similarity=-0.028  Sum_probs=76.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....+ ............. +|  ..+.+.|||   |-.+...           ....
T Consensus         9 vG~~~vGKTsLi~r~~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~~~~~d~~---g~~~~~~-----------~~~~   71 (167)
T d1z08a1           9 LGEGCVGKTSLVLRYCENK-FNDKHIT-TLGASFLTKKLNI-GGKRVNLAIWDTA---GQERFHA-----------LGPI   71 (167)
T ss_dssp             ECCTTSCHHHHHHHHHHCC-CCSSCCC-CCSCEEEEEEEES-SSCEEEEEEEECC---CC------------------CC
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCccccc-ccccchheeeecc-CCccceeeeeccC---Ccceecc-----------cchh
Confidence            6999999999999999764 5443222 1122222223334 55  477899999   8653211           1123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGK-KVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~-~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...++|++|||+++.++-|-+.  +..++..+... ......+||.|+.|.....  .+       .....+.+.+..+-
T Consensus        72 ~~~~~~~~i~v~d~~~~~Sf~~--~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~--~v-------~~~e~~~~a~~~~~  140 (167)
T d1z08a1          72 YYRDSNGAILVYDITDEDSFQK--VKNWVKELRKMLGNEICLCIVGNKIDLEKER--HV-------SIQEAESYAESVGA  140 (167)
T ss_dssp             SSTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHHGGGSEEEEEEECGGGGGGC--CS-------CHHHHHHHHHHTTC
T ss_pred             hccCCceeEEEEeCCchhHHHh--hhhhhhhcccccccccceeeecccccccccc--cc-------chHHHHHHHHHcCC
Confidence            4678999999999863322211  22222222211 1234667778888865431  11       12345677777777


Q ss_pred             eEEEEcCCC
Q 044972          160 RRVLFDNKT  168 (307)
Q Consensus       160 R~~~fnNk~  168 (307)
                      .|+-...++
T Consensus       141 ~~~e~Sak~  149 (167)
T d1z08a1         141 KHYHTSAKQ  149 (167)
T ss_dssp             EEEEEBTTT
T ss_pred             eEEEEecCC
Confidence            776555444

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.28  E-value=2.4e-06  Score=69.89  Aligned_cols=136  Identities=14%  Similarity=0.045  Sum_probs=74.2

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeE-EEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCE-MQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~-~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.+++.+ |.....+   |.... .....+ +|.  .+.+.|||   |..+.    ..+....     
T Consensus        10 vG~~~vGKTsli~~~~~~~-f~~~~~~---T~~~~~~~~~~~-~~~~~~l~i~d~~---g~~~~----~~~~~~~-----   72 (168)
T d1u8za_          10 VGSGGVGKSALTLQFMYDE-FVEDYEP---TKADSYRKKVVL-DGEEVQIDILDTA---GQEDY----AAIRDNY-----   72 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSC-CCSCCCT---TCCEEEEEEEEE-TTEEEEEEEEECC---C---C----HHHHHHH-----
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCcccCC---cccccccccccc-ccccccccccccc---cccch----hhhhhhc-----
Confidence            6999999999999998754 6543322   22211 223345 775  66779999   87542    1222211     


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHH-HHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEG-AAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCD  158 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~-~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg  158 (307)
                        ..+.|++|||+++.++-+-+.. ..+..+....+. .--..+||.|+.|..+..  .    +   ..+..+.+.+..+
T Consensus        73 --~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~~--~----v---~~~~~~~~~~~~~  140 (168)
T d1u8za_          73 --FRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKR--Q----V---SVEEAKNRADQWN  140 (168)
T ss_dssp             --HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGC--C----S---CHHHHHHHHHHHT
T ss_pred             --ccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEeccccccccc--c----c---cHHHHHHHHHHcC
Confidence              1257999999998743332221 122233333222 234688899999853221  1    1   1234566677767


Q ss_pred             CeEEEEcCC
Q 044972          159 NRRVLFDNK  167 (307)
Q Consensus       159 ~R~~~fnNk  167 (307)
                      -.|+-.+-+
T Consensus       141 ~~~~e~Sak  149 (168)
T d1u8za_         141 VNYVETSAK  149 (168)
T ss_dssp             CEEEECCTT
T ss_pred             CeEEEEcCC
Confidence            666544433

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.26  E-value=2.1e-06  Score=69.30  Aligned_cols=109  Identities=12%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|++||||||++|.+.|.....+.     .|.........+ ++..+.+.|++   |..+.....           ...
T Consensus        18 lvG~~~vGKTsLl~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~-----------~~~   77 (186)
T d1f6ba_          18 FLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLG---GHIQARRVW-----------KNY   77 (186)
T ss_dssp             EEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEEC---C----CCGG-----------GGG
T ss_pred             EECCCCCCHHHHHHHHhCCCCccee-----cccccceeEEEe-ccccccccccc---chhhhhhHH-----------hhh
Confidence            3799999999999999998754322     122233334556 88899999999   654332111           133


Q ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhh-ccc-cCCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLF-GKK-VFDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~F-G~~-~~~~~IVLfT~~D~L~  132 (307)
                      .+.++++++|+++..+-...+  ....+.... ... .-.+++|+.++.|...
T Consensus        78 ~~~~~~~~~~~d~~d~~~~~~--~~~~~~~~~~~~~~~~~~~li~~~K~D~~~  128 (186)
T d1f6ba_          78 LPAINGIVFLVDCADHERLLE--SKEELDSLMTDETIANVPILILGNKIDRPE  128 (186)
T ss_dssp             GGGCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             hcccceeeeeeeccCccchHH--HHHHHHHhhcccccCCCceEEEEeccCccc
Confidence            457899999998763222222  222222222 222 3457888888887644

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.7e-06  Score=71.95  Aligned_cols=110  Identities=17%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.++.. .|.....+. +...+ ...... +|.  .+.++|||   |-......           ...
T Consensus        15 vG~~~vGKTsLi~r~~~~-~f~~~~~~T-i~~~~-~~~~~~-~~~~~~l~i~D~~---g~e~~~~~-----------~~~   76 (185)
T d2atxa1          15 VGDGAVGKTCLLMSYAND-AFPEEYVPT-VFDHY-AVSVTV-GGKQYLLGLYDTA---GQEDYDRL-----------RPL   76 (185)
T ss_dssp             EECTTSSHHHHHHHHHHS-SCCCSCCCS-SCCCE-EEEEES-SSCEEEEEEECCC---CSSSSTTT-----------GGG
T ss_pred             ECCCCCCHHHHHHHHhhC-CCCCcCCCc-eeeee-eEEEee-CCceEEeeccccc---ccchhhhh-----------hhh
Confidence            699999999999999875 465443221 11122 222233 553  56799999   86432111           123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH--HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE--GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee--~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|||+++.++-|=+.  ...+..+.. +++  ...+|||.|+.|..+.
T Consensus        77 ~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~-~~~--~~~~ilvgnK~Dl~~~  128 (185)
T d2atxa1          77 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAP--NVPFLLIGTQIDLRDD  128 (185)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HST--TCCEEEEEECTTSTTC
T ss_pred             cccccceeeeccccchHHHHHHHHHHHHHHHHh-cCC--CCCeeEeeeccccccc
Confidence            4568999999999873322111  122222332 222  2467899999997654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=2e-06  Score=75.88  Aligned_cols=133  Identities=14%  Similarity=0.158  Sum_probs=80.1

Q ss_pred             CCCCCCcHHHHHHHHH---CC------------------Cccccc--------cCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSIL---GR------------------RAFKSK--------VGSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~------------------~~F~s~--------~s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|..++|||||.-.||   |.                  ..|...        ....++|-.+......| .++++++||
T Consensus        12 iGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~iiD   90 (239)
T d1f60a3          12 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQVTVID   90 (239)
T ss_dssp             EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEEEEEEE
T ss_pred             EeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CCEEEEEEE
Confidence            5899999999999886   21                  111100        00135566666667788 999999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCC-CC------CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRN-RF------SEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~-Rf------T~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |-.|       ...++.    .+..-.|+.|||+++.. .|      ..+-+..+... ..+|   .++.||+.+
T Consensus        91 tP---GH~d-------f~~~~~----~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~-~~~g---v~~iiv~iN  152 (239)
T d1f60a3          91 AP---GHRD-------FIKNMI----TGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTLG---VRQLIVAVN  152 (239)
T ss_dssp             CC---CCTT-------HHHHHH----HSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHTT---CCEEEEEEE
T ss_pred             CC---CcHH-------HHHHHH----HHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHH-HHcC---CCeEEEEEE
Confidence            99   9865       222332    34556899999998741 21      11222222222 2222   578999999


Q ss_pred             cCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972          127 RGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus       127 ~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      +.|..+.+...+++..     ..+..++...+.
T Consensus       153 KmD~~~~d~~~~~~~~-----~el~~~l~~~~~  180 (239)
T d1f60a3         153 KMDSVKWDESRFQEIV-----KETSNFIKKVGY  180 (239)
T ss_dssp             CGGGGTTCHHHHHHHH-----HHHHHHHHHHTC
T ss_pred             CCCCCCCCHHHHHHHH-----HHHHHHHHhcCC
Confidence            9998764322222222     246777776554

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=9.1e-07  Score=72.14  Aligned_cols=133  Identities=11%  Similarity=-0.025  Sum_probs=73.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....+ +............ ++.  .+.+.|||   |......-           ...
T Consensus        10 vG~~~vGKTsli~rl~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~~~i~d~~---g~~~~~~~-----------~~~   72 (167)
T d1z0ja1          10 LGDTGVGKSSIMWRFVEDS-FDPNINP-TIGASFMTKTVQY-QNELHKFLIWDTA---GLERFRAL-----------APM   72 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSC-CCTTCCC-CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGGGG-----------THH
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCccccc-ccccccccccccc-cccccceeeeecC---CchhhhHH-----------HHH
Confidence            6999999999999999765 4433221 1122222223333 443  45688999   86543211           112


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhcCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLCDN  159 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~Cg~  159 (307)
                      ...++|++|+|+++.++=+-+. ...+..+....+  -..+++||.|+.|..+..  .    +   .....+.+.+..+-
T Consensus        73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~--~----v---~~~~~~~~~~~~~~  141 (167)
T d1z0ja1          73 YYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVR--E----V---MERDAKDYADSIHA  141 (167)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGC--C----S---CHHHHHHHHHHTTC
T ss_pred             HHhhccceEEEeeechhhhhhhHHHhhhhhhhccC--CcceEEEecccchhcccc--c----h---hHHHHHHHHHHcCC
Confidence            3457899999999863211111 111222233333  245788889999864331  1    1   12345667777666


Q ss_pred             eEEE
Q 044972          160 RRVL  163 (307)
Q Consensus       160 R~~~  163 (307)
                      .|+-
T Consensus       142 ~~~e  145 (167)
T d1z0ja1         142 IFVE  145 (167)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=2.1e-07  Score=82.03  Aligned_cols=54  Identities=19%  Similarity=0.089  Sum_probs=33.5

Q ss_pred             CCCCCCcHHHHHHHHHCCCcccccc-CC-----CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKV-GS-----SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDS   63 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~-s~-----~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt   63 (307)
                      +|.+||||||++|+|+|.....++. |.     ...|+..+...  +++|  -.|||||   ||-+.
T Consensus       101 ~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~--l~~g--g~iiDTP---G~r~~  160 (225)
T d1u0la2         101 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--FDFG--GYVVDTP---GFANL  160 (225)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--CTTS--CEEESSC---SSTTC
T ss_pred             ECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE--ECCC--cEEEeCC---ccccc
Confidence            6999999999999999986654432 21     12344333332  3233  4899999   88543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.22  E-value=4.1e-07  Score=82.35  Aligned_cols=85  Identities=9%  Similarity=-0.112  Sum_probs=40.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEE-Ee----------------------CCeEEEEEeCCCCC
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTM-LK----------------------DGQVVNVIDTPAIA   58 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~-~~----------------------~Gr~v~VIDTP~~~   58 (307)
                      .+|.|||||||++|+|.|.++-....+.  +|-+...+... ++                      .+.++.++|+|   
T Consensus         5 lvG~pn~GKStlfn~lt~~~~~v~nypf--tT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p---   79 (319)
T d1wxqa1           5 VVGKPNVGKSTFFSAATLVDVEIANYPF--TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA---   79 (319)
T ss_dssp             EEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC---
T ss_pred             EECCCCCCHHHHHHHHHCCCCchhcCCC--CcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC---
Confidence            4799999999999999998753322211  22222222110 00                      22479999999   


Q ss_pred             CCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           59 RLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        59 Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      ||.......    +.+..-+......+|++++|+++.
T Consensus        80 Gli~ga~~g----~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETT
T ss_pred             Ccccchhcc----cchHHHHHHhhccceEEEEEeccc
Confidence            997532111    222222323346789999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.8e-06  Score=68.14  Aligned_cols=133  Identities=11%  Similarity=-0.026  Sum_probs=76.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |...... ++........... +|.  .+.+.|||   |..+..           .....
T Consensus        12 vG~~~vGKSSli~~~~~~~-~~~~~~~-t~~~~~~~~~~~~-~~~~~~~~i~d~~---g~~~~~-----------~~~~~   74 (174)
T d1wmsa_          12 LGDGGVGKSSLMNRYVTNK-FDTQLFH-TIGVEFLNKDLEV-DGHFVTMQIWDTA---GQERFR-----------SLRTP   74 (174)
T ss_dssp             ECCTTSSHHHHHHHHHHSC-CCC-----CCSEEEEEEEEEE-TTEEEEEEEEECC---CCGGGH-----------HHHGG
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCCcccc-ceeeeeeeeeeee-cCceeeEeeeccc---Ccceeh-----------hhhhh
Confidence            6999999999999999754 5433322 2223333344445 664  55799999   864321           12234


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhcccc--CCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKV--FDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      ....+|++++|+++..+.+-+. ...++.+..+.+...  --++|||.|+.|..+.   .    +   .....+++.++.
T Consensus        75 ~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~---~----v---~~~~~~~~~~~~  144 (174)
T d1wmsa_          75 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER---Q----V---STEEAQAWCRDN  144 (174)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC---S----S---CHHHHHHHHHHT
T ss_pred             hhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhc---c----C---cHHHHHHHHHHc
Confidence            4568899999999863322221 223333444443322  2368999999996432   1    1   123456777765


Q ss_pred             CC-eEE
Q 044972          158 DN-RRV  162 (307)
Q Consensus       158 g~-R~~  162 (307)
                      ++ .|+
T Consensus       145 ~~~~~~  150 (174)
T d1wmsa_         145 GDYPYF  150 (174)
T ss_dssp             TCCCEE
T ss_pred             CCCeEE
Confidence            53 454

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=1.8e-07  Score=82.89  Aligned_cols=52  Identities=21%  Similarity=0.112  Sum_probs=29.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCC------CCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGS------SEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFD   62 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~------~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~D   62 (307)
                      +|++||||||++|+|+|.....++.-+      ...|+..+..  .. +|-  .|||||   ||.+
T Consensus       103 ~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~--~~-~gg--~iiDTP---G~r~  160 (231)
T d1t9ha2         103 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HT-SGG--LVADTP---GFSS  160 (231)
T ss_dssp             EESHHHHHHHHHHHHCC-------------------CCCCCEE--EE-TTE--EEESSC---SCSS
T ss_pred             ECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEE--ec-CCC--EEEECC---cccc
Confidence            599999999999999998665433211      1234444443  24 553  589999   8744

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.5e-06  Score=68.54  Aligned_cols=109  Identities=14%  Similarity=0.017  Sum_probs=62.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEE-EEEEEeCC--eEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEM-QRTMLKDG--QVVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~-~~~~~~~G--r~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||++|.+++.+ |.....+   |..... ..... ++  ..+.+.||+   |........    .       
T Consensus         9 vG~~~vGKTsli~r~~~~~-f~~~~~~---t~~~~~~~~~~~-~~~~~~~~~~d~~---g~~~~~~~~----~-------   69 (167)
T d1c1ya_           9 LGSGGVGKSALTVQFVQGI-FVEKYDP---TIEDSYRKQVEV-DCQQCMLEILDTA---GTEQFTAMR----D-------   69 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHCC-CCCSCCC---CSEEEEEEEEES-SSCEEEEEEEEEC---SSCSSTTHH----H-------
T ss_pred             ECCCCCCHHHHHHHHHcCC-CCCccCC---ccccccceeEEe-eeeEEEecccccc---Ccccccccc----c-------
Confidence            6999999999999998765 5433221   222221 12223 34  468899999   865432111    1       


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK--VFDYMIVVFTRGDELE  132 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~--~~~~~IVLfT~~D~L~  132 (307)
                      ....+.|++|||+++.++-|-+.  +-.++..+....  ..-..|||.|+.|...
T Consensus        70 ~~~~~~~~~ilv~d~~~~~sf~~--~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~  122 (167)
T d1c1ya_          70 LYMKNGQGFALVYSITAQSTFND--LQDLREQILRVKDTEDVPMILVGNKCDLED  122 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHT--HHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred             ccccccceeEEeeeccchhhhHh--HHHHHHHHHHhcCCCCCeEEEEEEecCccc
Confidence            12246899999999874322222  223333332211  2346788899998654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.1e-06  Score=69.96  Aligned_cols=110  Identities=18%  Similarity=0.023  Sum_probs=63.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.. |.....+.  ........... ++.  .+.+.|++   |-.....           ....
T Consensus        11 iG~~~vGKTsli~~~~~~~-f~~~~~~t--i~~~~~~~~~~-~~~~~~~~~~d~~---g~~~~~~-----------~~~~   72 (183)
T d1mh1a_          11 VGDGAVGKTCLLISYTTNA-FPGEYIPT--VFDNYSANVMV-DGKPVNLGLWDTA---GQEDYDR-----------LRPL   72 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSS-CCSSCCCC--SCCEEEEEEEE-TTEEEEEEEECCC---CSGGGTT-----------TGGG
T ss_pred             ECCCCCCHHHHHHHHHhCC-CCcccccc--eeeceeeeeec-cCcceEEEeeccc---ccccchh-----------hhhh
Confidence            6999999999999999875 54432221  11122223344 664  55678888   6432111           1123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHH--HHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEG--AAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~--~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|++|||+++.++-|-+..  .....+.. .+.  ...+|||.|+.|....
T Consensus        73 ~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~-~~~--~~piilvgnK~Dl~~~  124 (183)
T d1mh1a_          73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCP--NTPIILVGTKLDLRDD  124 (183)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HST--TSCEEEEEECHHHHTC
T ss_pred             cccccceeeeeeccchHHHHHHHHHHHHHHHHH-hCC--CCcEEEEeecccchhh
Confidence            45789999999998733222221  12222222 222  3478999999996554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.09  E-value=7.9e-07  Score=80.23  Aligned_cols=82  Identities=12%  Similarity=-0.034  Sum_probs=55.0

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCC----------------eEEEEEeCCCCCCCCCCCc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDG----------------QVVNVIDTPAIARLFDSSA   65 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~G----------------r~v~VIDTP~~~Gl~Dt~~   65 (307)
                      .+|.|||||||++|+|.+.++.... ...-+|..+..+...+||.                .++.++|.|   ||-....
T Consensus        15 ivG~Pn~GKSTlfnalT~~~~~~~a-nypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~Dva---GLv~gA~   90 (296)
T d1ni3a1          15 IVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA---GLTKGAS   90 (296)
T ss_dssp             EEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG---GGCCCCC
T ss_pred             EECCCCCCHHHHHHHHHCCCCCCcC-CCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecc---ccccccc
Confidence            4799999999999999987654332 1223555666666666543                389999999   9864322


Q ss_pred             CH----HHHHHHHHHHHHhcCCCCeEEEEEEeCC
Q 044972           66 DF----EFVSKEIVKCIGMAKDGIHAVLIVFSVR   95 (307)
Q Consensus        66 ~~----~~i~~eI~kcv~ls~pGpha~LLVl~~~   95 (307)
                      ..    ..+...|        ...+|+|.|+++.
T Consensus        91 ~g~GLGn~fL~~i--------r~~d~lihVV~~f  116 (296)
T d1ni3a1          91 TGVGLGNAFLSHV--------RAVDAIYQVVRAF  116 (296)
T ss_dssp             SSSSSCHHHHHHH--------TTCSEEEEEEECC
T ss_pred             cccccHHHHHHHh--------hccceeEEEEecc
Confidence            11    2333333        3578999999863

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.1e-06  Score=71.66  Aligned_cols=111  Identities=17%  Similarity=0.032  Sum_probs=66.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM   80 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l   80 (307)
                      +|.+||||||++|.+++.+ |.....  +...........+ +|.  .+.+.|||   |-.+...           ....
T Consensus         9 lG~~~vGKTSli~r~~~~~-f~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~D~~---g~~~~~~-----------~~~~   70 (191)
T d2ngra_           9 VGDGAVGKTCLLISYTTNK-FPSEYV--PTVFDNYAVTVMI-GGEPYTLGLFDTA---GQEDYDR-----------LRPL   70 (191)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCSSCC--CCSEEEEEEEEEE-TTEEEEEEEEEEC---CSGGGTT-----------TGGG
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCCcC--CceeeecceeEee-CCceeeeeccccc---cchhhhh-----------hhhh
Confidence            6999999999999999764 543322  2111222333445 665  68889999   8643211           1123


Q ss_pred             cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccc-cCCeEEEEEecCCCCCC
Q 044972           81 AKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKK-VFDYMIVVFTRGDELED  133 (307)
Q Consensus        81 s~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~-~~~~~IVLfT~~D~L~~  133 (307)
                      ...+.|+++||+++.++-|-+  .+..++...+... -..++++|.|+.|..+.
T Consensus        71 ~~~~~~~~ilv~d~~~~~Sf~--~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          71 SYPQTDVFLVCFSVVSPSSFE--NVKEKWVPEITHHCPKTPFLLVGTQIDLRDD  122 (191)
T ss_dssp             GCTTCSEEEEEEETTCHHHHH--HHHHTHHHHHHHHCTTCCEEEEEECGGGGGC
T ss_pred             cccccceeecccccchHHHHH--HHHHHHHHHHhhcCCCCceEEEecccccccc
Confidence            456899999999987432212  2222333333222 23568899999997654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=2.4e-06  Score=70.93  Aligned_cols=110  Identities=15%  Similarity=-0.014  Sum_probs=64.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCc-eeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTK-TCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVKCIG   79 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~-~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~   79 (307)
                      +|.+||||||+++.++... |.....+   |- ........+ +|.  .+.+.|||   |...-...           ..
T Consensus         8 iG~~~vGKTsli~r~~~~~-f~~~~~~---t~~~~~~~~~~~-~~~~~~~~i~D~~---g~~~~~~~-----------~~   68 (179)
T d1m7ba_           8 VGDSQCGKTALLHVFAKDC-FPENYVP---TVFENYTASFEI-DTQRIELSLWDTS---GSPYYDNV-----------RP   68 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSC-CCSSCCC---CSEEEEEEEEEC-SSCEEEEEEEEEC---CSGGGTTT-----------GG
T ss_pred             ECCCCcCHHHHHHHHHhCC-CCCccCC---ceeecccccccc-cceEEeecccccc---cccccccc-----------cc
Confidence            6999999999999999764 5433222   22 222233345 665  55699999   75321110           11


Q ss_pred             hcCCCCeEEEEEEeCCCCCCHHH-HHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 044972           80 MAKDGIHAVLIVFSVRNRFSEEE-GAAIHSLESLFGKKVFDYMIVVFTRGDELED  133 (307)
Q Consensus        80 ls~pGpha~LLVl~~~~RfT~ee-~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~  133 (307)
                      ....+.|++|||+++.++-|=+. ...+..+...+++  --+.|||.|+.|....
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~~~  121 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKMLLVGCKSDLRTD  121 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCEEEEEEECGGGGGC
T ss_pred             chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCC--cceEEEEEeccccccc
Confidence            34568999999999873322111 1111122222333  3478999999986544

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.6e-06  Score=75.84  Aligned_cols=103  Identities=14%  Similarity=0.062  Sum_probs=66.1

Q ss_pred             CCCCCCCCcHHHHHHHHHCCC-ccccccCCCCCCceeEEEEEEEe--CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHH-
Q 044972            1 SCACEYIKICTTTGNSILGRR-AFKSKVGSSEDTKTCEMQRTMLK--DGQVVNVIDTPAIARLFDSSADFEFVSKEIVK-   76 (307)
Q Consensus         1 ~~~~~tGsGKSStgNsILG~~-~F~s~~s~~svT~~c~~~~~~~~--~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~k-   76 (307)
                      |.+|++++|||+++|.++|.. .|..+.+..++|+..-.....++  .+..|.++||+   |+++...++......|.- 
T Consensus        36 si~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDte---G~~~~~~~~~~~~~~i~~l  112 (277)
T d1f5na2          36 AIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTE---GLGDVEKGDNQNDSWIFAL  112 (277)
T ss_dssp             EEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEEC---CBCCGGGCCCTTHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecc---cccccccccchhHHHHHHH
Confidence            357999999999999999964 58777777778876655444332  34689999999   999865432222222222 


Q ss_pred             HHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Q 044972           77 CIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESL  112 (307)
Q Consensus        77 cv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~  112 (307)
                      ++.+|    +++|+-+. + .+.+.+...+..+..+
T Consensus       113 ~~llS----s~~i~N~~-~-~~~~~~l~~L~~~~~~  142 (277)
T d1f5na2         113 AVLLS----STFVYNSI-G-TINQQAMDQLYYVTEL  142 (277)
T ss_dssp             HHHHC----SEEEEEEE-S-CSSHHHHHTTHHHHTH
T ss_pred             HHHHh----CEEEEecc-c-cCcHHHHHHHHHHHHH
Confidence            22232    45555554 3 6777776655555443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.95  E-value=1.2e-05  Score=69.44  Aligned_cols=111  Identities=19%  Similarity=0.164  Sum_probs=63.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCcc-----------------------------ccccCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAF-----------------------------KSKVGSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F-----------------------------~s~~s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +|..++|||||.-+||...-.                             .......+.|.........+ +++.+++||
T Consensus         9 iGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~~i~iiD   87 (224)
T d1jnya3           9 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKYFFTIID   87 (224)
T ss_dssp             EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSCEEEECC
T ss_pred             EecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CCceeEEee
Confidence            589999999999888632100                             00011123444444455678 999999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC-------CHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRF-------SEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~Rf-------T~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |-.|       ...++..    +....|+.|||+++..-.       -.+-+..+... ..+|   .++.||+.+
T Consensus        88 tP---GH~d-------f~~~~~~----g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~~~---~~~iIv~iN  149 (224)
T d1jnya3          88 AP---GHRD-------FVKNMIT----GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTMG---LDQLIVAVN  149 (224)
T ss_dssp             CS---SSTT-------HHHHHHH----TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHTT---CTTCEEEEE
T ss_pred             CC---CcHH-------HHHHHHH----HHHhhceEEEEEecccCcccccccccchhHHHHHHH-HHhC---CCceEEEEE
Confidence            99   8754       2334433    345579999999986221       11122222222 2232   467899999


Q ss_pred             cCCCCC
Q 044972          127 RGDELE  132 (307)
Q Consensus       127 ~~D~L~  132 (307)
                      +-|...
T Consensus       150 K~D~~~  155 (224)
T d1jnya3         150 KMDLTE  155 (224)
T ss_dssp             CGGGSS
T ss_pred             cccCCC
Confidence            999764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=2.1e-06  Score=76.57  Aligned_cols=78  Identities=13%  Similarity=-0.083  Sum_probs=48.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCe----------------EEEEEeCCCCCCCCCCCcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQ----------------VVNVIDTPAIARLFDSSAD   66 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr----------------~v~VIDTP~~~Gl~Dt~~~   66 (307)
                      +|-|||||||++|+|.+.++-....  .-+|-....+...+||.|                .|.++|.|   ||-.. .+
T Consensus         8 vG~Pn~GKSTlf~~lt~~~~~~~~y--pf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~---GLi~g-a~   81 (278)
T d1jala1           8 VGLPNVGKSTLFNALTKAGIEAANY--PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIA---GLVAG-AS   81 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECC---SCCTT-HH
T ss_pred             ECCCCCCHHHHHHHHHCCCCccccC--CCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEcc---ccCCC-cc
Confidence            7999999999999999877532221  123445555555554332                58899999   98632 11


Q ss_pred             HH-----HHHHHHHHHHHhcCCCCeEEEEEEeC
Q 044972           67 FE-----FVSKEIVKCIGMAKDGIHAVLIVFSV   94 (307)
Q Consensus        67 ~~-----~i~~eI~kcv~ls~pGpha~LLVl~~   94 (307)
                      ..     +..+.|.        ..+|++.|+++
T Consensus        82 ~g~Glg~~FL~~ir--------~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIR--------ETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHH--------TCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHH--------hccceEEEeec
Confidence            11     2334443        46899999975

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=2.9e-05  Score=71.82  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=69.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccC--------------CCCCCceeEEEEEEEe---------------CCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVG--------------SSEDTKTCEMQRTMLK---------------DGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s--------------~~svT~~c~~~~~~~~---------------~Gr~v~VID   53 (307)
                      +|..++||||+..+||-.....+...              ..+.|-.....+..++               ++..|++||
T Consensus        23 iGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~inliD  102 (341)
T d1n0ua2          23 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID  102 (341)
T ss_dssp             ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred             EeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEEEEEc
Confidence            69999999999999972111110000              0122222222222221               345799999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDEL  131 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L  131 (307)
                      ||   |-.|-.       .|+..++..    .|+.|||+++...++.+....++....     .-..+||++|+.|.+
T Consensus       103 tP---Gh~dF~-------~ev~~al~~----~D~allVVda~eGv~~qT~~~~~~a~~-----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         103 SP---GHVDFS-------SEVTAALRV----TDGALVVVDTIEGVCVQTETVLRQALG-----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CC---CCCSSC-------HHHHHHHHT----CSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCEEEEEEECHHHH
T ss_pred             CC---CcHHHH-------HHHHHHHhh----cCceEEEEecccCcchhHHHHHHHHHH-----cCCCeEEEEECcccc
Confidence            99   877643       244444443    588899998876888888888877665     256889999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=5.8e-05  Score=61.95  Aligned_cols=109  Identities=13%  Similarity=0.045  Sum_probs=69.2

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      .+|.+||||||++|.+    .|....   ..|.........+ .+..+.++||+   |.-...           ......
T Consensus         7 llG~~~vGKTsll~r~----~f~~~~---~pTiG~~~~~~~~-~~~~~~~~D~~---gq~~~~-----------~~~~~~   64 (200)
T d1zcba2           7 LLGAGESGKSTFLKQM----RIIHGQ---DPTKGIHEYDFEI-KNVPFKMVDVG---GQRSER-----------KRWFEC   64 (200)
T ss_dssp             EECSTTSSHHHHHHHH----HHHHSC---CCCSSEEEEEEEE-TTEEEEEEEEC---C------------------CTTS
T ss_pred             EECCCCCCHHHHHHHH----hcCCCC---CCeeeeEEEEEee-eeeeeeeeccc---ceeeec-----------cccccc
Confidence            4799999999999998    354322   2355566666777 89999999999   753211           111245


Q ss_pred             CCCCeEEEEEEeCCCCCC--------HHHHHHHHHHHHhhcccc--CCeEEEEEecCCCCC
Q 044972           82 KDGIHAVLIVFSVRNRFS--------EEEGAAIHSLESLFGKKV--FDYMIVVFTRGDELE  132 (307)
Q Consensus        82 ~pGpha~LLVl~~~~RfT--------~ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L~  132 (307)
                      ..+.+++++|.+......        ..-...+..+..+.....  -.+++|++++.|.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          65 FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             ccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            568899999998763221        122334455555554432  347899999988654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.77  E-value=2.7e-05  Score=68.44  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=58.6

Q ss_pred             CCCCCCcHHHHHHHHH---CC------------------Cccc----c----ccCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSIL---GR------------------RAFK----S----KVGSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~------------------~~F~----s----~~s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      .|..++|||||...||   |.                  ..|.    .    .....+.|-.+......+ +++.+++||
T Consensus        30 iGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~~i~~iD  108 (245)
T d1r5ba3          30 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHRRFSLLD  108 (245)
T ss_dssp             EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSEEEEECC
T ss_pred             EeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-ccceeeeec
Confidence            5899999999999995   21                  0000    0    000112333333344567 889999999


Q ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCC-------CCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           54 TPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNR-------FSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        54 TP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~R-------fT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ||   |-.|.       ..++    ..+...+|+.|||+++...       +..+-+..+..+. .+|   .+++||+.+
T Consensus       109 tP---GH~df-------~~~~----~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~-~~~---i~~iiv~iN  170 (245)
T d1r5ba3         109 AP---GHKGY-------VTNM----INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG---INHLVVVIN  170 (245)
T ss_dssp             CC---C----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT---CSSEEEEEE
T ss_pred             cc---ccccc-------hhhh----hhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHH-HcC---CCeEEEEEE
Confidence            99   87652       1222    2344568999999988521       1223333333332 222   567899999


Q ss_pred             cCCCCC
Q 044972          127 RGDELE  132 (307)
Q Consensus       127 ~~D~L~  132 (307)
                      +.|...
T Consensus       171 KmD~~~  176 (245)
T d1r5ba3         171 KMDEPS  176 (245)
T ss_dssp             CTTSTT
T ss_pred             cCCCCc
Confidence            999764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.70  E-value=9.6e-06  Score=70.18  Aligned_cols=77  Identities=16%  Similarity=0.164  Sum_probs=45.4

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc-CCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA-KDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls-~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      +..+++||||   |....+.....-...+.+.+... ...|+-++||+++.  ...++...+....+.+|     ..=++
T Consensus        88 ~~d~ilIDTa---Gr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~--~~~~~~~~~~~~~~~~~-----~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTA---GRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAV--TGQNGLEQAKKFHEAVG-----LTGVI  157 (207)
T ss_dssp             TCSEEEECCC---CCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT--BCTHHHHHHHHHHHHHC-----CSEEE
T ss_pred             CCCEEEcCcc---ccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecc--cCchHHHHHHHhhhccC-----CceEE
Confidence            5689999999   97543321122222333333333 34789999999986  33455444444444433     34568


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      ||+-|.-.
T Consensus       158 ~TKlDet~  165 (207)
T d1okkd2         158 VTKLDGTA  165 (207)
T ss_dssp             EECTTSSC
T ss_pred             EeccCCCC
Confidence            99988643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.66  E-value=0.00011  Score=63.44  Aligned_cols=75  Identities=9%  Similarity=0.055  Sum_probs=43.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..+++||||   |....+ .......++.+.....  .|+-++||+++...  .++...+......     ....=++
T Consensus        93 ~~~d~IlIDTa---Gr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~--~~~~~~~~~~~~~-----~~~~~lI  159 (211)
T d1j8yf2          93 EKMEIIIVDTA---GRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIG--QKAYDLASKFNQA-----SKIGTII  159 (211)
T ss_dssp             TTCSEEEEECC---CSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGHHHHHHHHHHH-----CTTEEEE
T ss_pred             cCCceEEEecC---CcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccC--cchHHHHhhhhcc-----cCcceEE
Confidence            55689999999   974322 2233345555544333  47889999987622  3343333333333     2334467


Q ss_pred             EecCCCCC
Q 044972          125 FTRGDELE  132 (307)
Q Consensus       125 fT~~D~L~  132 (307)
                      ||+-|+-.
T Consensus       160 ~TKlDet~  167 (211)
T d1j8yf2         160 ITKMDGTA  167 (211)
T ss_dssp             EECTTSCS
T ss_pred             EecccCCC
Confidence            99988743

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.60  E-value=9.6e-05  Score=63.59  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=45.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEE
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVV  124 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVL  124 (307)
                      .+..+++||||   |....+   .....++.+....  .+||-++||++..  .-.+....+..+.+.+|     ..=++
T Consensus        91 ~~~d~vlIDTa---Gr~~~d---~~~~~el~~~~~~--~~~~~~llv~~a~--~~~~~~~~~~~f~~~~~-----~~~~I  155 (207)
T d1ls1a2          91 EARDLILVDTA---GRLQID---EPLMGELARLKEV--LGPDEVLLVLDAM--TGQEALSVARAFDEKVG-----VTGLV  155 (207)
T ss_dssp             HTCCEEEEECC---CCSSCC---HHHHHHHHHHHHH--HCCSEEEEEEEGG--GTHHHHHHHHHHHHHTC-----CCEEE
T ss_pred             ccCcceeeccc---ccchhh---hhhHHHHHHHHhh--cCCceEEEEeccc--cchhHHHHHHHHHhhCC-----CCeeE
Confidence            45689999999   976433   4555666655433  3578899999875  22444445555544443     34478


Q ss_pred             EecCCCC
Q 044972          125 FTRGDEL  131 (307)
Q Consensus       125 fT~~D~L  131 (307)
                      ||+-|.-
T Consensus       156 ~TKlDe~  162 (207)
T d1ls1a2         156 LTKLDGD  162 (207)
T ss_dssp             EECGGGC
T ss_pred             EeecCcc
Confidence            8988863

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.51  E-value=0.00013  Score=61.48  Aligned_cols=79  Identities=14%  Similarity=0.075  Sum_probs=40.1

Q ss_pred             CeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEE
Q 044972           46 GQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAKDGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVF  125 (307)
Q Consensus        46 Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLf  125 (307)
                      .+.+.+||||   |..+..     ........+ .....++++++|+++..-...+............-....-..+|++
T Consensus        94 ~~~~~~id~~---g~~~~~-----~~~~~~~~~-~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvi  164 (244)
T d1yrba1          94 ENDYVLIDTP---GQMETF-----LFHEFGVRL-MENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPAL  164 (244)
T ss_dssp             HCSEEEEECC---SSHHHH-----HHSHHHHHH-HHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred             ccceeeeccc---cchhHH-----HHHHHHHHH-HhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeee
Confidence            4579999999   874321     111111111 1123456777788765223333222222222111122345678999


Q ss_pred             ecCCCCCC
Q 044972          126 TRGDELED  133 (307)
Q Consensus       126 T~~D~L~~  133 (307)
                      ++.|.+..
T Consensus       165 nK~D~~~~  172 (244)
T d1yrba1         165 NKVDLLSE  172 (244)
T ss_dssp             CCGGGCCH
T ss_pred             eccccccH
Confidence            99998865

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=2.2e-05  Score=68.17  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC----CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK----DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~----pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~  120 (307)
                      ++..+++||||   |...   .+.....++.+......    ..|+-++||+++.  ...++...   +...|.  ....
T Consensus        92 ~~~d~ilIDTa---Gr~~---~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~--~~~~~~~~---~~~~~~--~~~~  158 (213)
T d1vmaa2          92 RNKDVVIIDTA---GRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT--TGQNGLVQ---AKIFKE--AVNV  158 (213)
T ss_dssp             TTCSEEEEEEC---CCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG--GHHHHHHH---HHHHHH--HSCC
T ss_pred             cCCCEEEEecc---cccc---chHHHHHHHHHHHhhhhhccccccceeEEeeccc--cCcchhhh---hhhhcc--ccCC
Confidence            46689999999   9754   34556666665544332    3589999999985  22333333   333332  2445


Q ss_pred             EEEEEecCCCC
Q 044972          121 MIVVFTRGDEL  131 (307)
Q Consensus       121 ~IVLfT~~D~L  131 (307)
                      .=++||+-|.-
T Consensus       159 ~~lI~TKlDe~  169 (213)
T d1vmaa2         159 TGIILTKLDGT  169 (213)
T ss_dssp             CEEEEECGGGC
T ss_pred             ceEEEecccCC
Confidence            66788998864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=1.7e-05  Score=68.91  Aligned_cols=74  Identities=12%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc---C-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCe
Q 044972           45 DGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA---K-DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDY  120 (307)
Q Consensus        45 ~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls---~-pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~  120 (307)
                      .+..+++||||   |...   .+....+|+.+.....   . ..|+-++||+++.  ...++...+....+.     ...
T Consensus        90 ~~~d~ilIDTa---Gr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~--~~~~~~~~~~~~~~~-----~~~  156 (211)
T d2qy9a2          90 RNIDVLIADTA---GRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS--TGQNAVSQAKLFHEA-----VGL  156 (211)
T ss_dssp             TTCSEEEECCC---CCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGG--GTHHHHHHHHHHHHH-----SCC
T ss_pred             cCCCEEEeccC---CCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcc--cCcchHHHHhhhhhc-----cCC
Confidence            35689999999   9753   2455566665544332   2 2488999999985  334444333333332     445


Q ss_pred             EEEEEecCCCC
Q 044972          121 MIVVFTRGDEL  131 (307)
Q Consensus       121 ~IVLfT~~D~L  131 (307)
                      .=++||+-|.-
T Consensus       157 ~~lIlTKlDe~  167 (211)
T d2qy9a2         157 TGITLTKLDGT  167 (211)
T ss_dssp             CEEEEECCTTC
T ss_pred             ceEEEeecCCC
Confidence            66788998864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.32  E-value=0.00043  Score=58.84  Aligned_cols=109  Identities=11%  Similarity=0.022  Sum_probs=72.7

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      ++|..||||||+++.+.... |       ..|.........+ ++..+.+.|++   |-.....           .-..+
T Consensus        11 llG~~~vGKTsll~~~~~~~-~-------~pTiG~~~~~~~~-~~~~~~~~D~~---Gq~~~r~-----------~w~~~   67 (221)
T d1azta2          11 LLGAGESGKSTIVKQMRILH-V-------VLTSGIFETKFQV-DKVNFHMFDVG---GQRDERR-----------KWIQC   67 (221)
T ss_dssp             EECSTTSSHHHHHHHHHHHH-C-------CCCCSCEEEEEEE-TTEEEEEEECC---CSTTTTT-----------GGGGG
T ss_pred             EECCCCCCHHHHHHHHhcCC-c-------CCCCCeEEEEEEE-CcEEEEEEecC---ccceecc-----------chhhh
Confidence            47999999999999984221 2       1243344455677 89999999999   8643211           01245


Q ss_pred             CCCCeEEEEEEeCCC--C------CCHHHHHHHHHHHHhhccccC--CeEEEEEecCCCCCC
Q 044972           82 KDGIHAVLIVFSVRN--R------FSEEEGAAIHSLESLFGKKVF--DYMIVVFTRGDELED  133 (307)
Q Consensus        82 ~pGpha~LLVl~~~~--R------fT~ee~~~l~~i~~~FG~~~~--~~~IVLfT~~D~L~~  133 (307)
                      ..+++++++|+++..  .      .+..-...+..+..+......  -.+||++++.|.++.
T Consensus        68 ~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          68 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             CTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             cccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            679999999998752  1      122234466777777777654  368888888886643

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.00084  Score=54.08  Aligned_cols=106  Identities=8%  Similarity=-0.012  Sum_probs=65.1

Q ss_pred             CCCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhc
Q 044972            2 CACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMA   81 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls   81 (307)
                      ++|..||||||++|.+.... |.        |..-......+ .+..+.+.||.   |--...           ......
T Consensus         7 llG~~~vGKTsl~~r~~~~~-~~--------t~~~~~~~~~~-~~~~~~i~D~~---Gq~~~~-----------~~~~~~   62 (195)
T d1svsa1           7 LLGAGESGKSTIVKQMKIIH-EA--------GTGIVETHFTF-KDLHFKMFDVG---GQRSER-----------KKWIHC   62 (195)
T ss_dssp             EECSTTSSHHHHHHHHHHHH-SC--------CCSEEEEEEEE-TTEEEEEEEEC---CSGGGG-----------GGGGGG
T ss_pred             EECCCCCCHHHHHHHHhhCC-CC--------CccEEEEEEEe-eeeeeeeeccc---cccccc-----------cchhhc
Confidence            57999999999999876432 21        11222334456 88899999999   853211           112245


Q ss_pred             CCCCeEEEEEEeCCC--CCCH------HHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 044972           82 KDGIHAVLIVFSVRN--RFSE------EEGAAIHSLESLFGKKV--FDYMIVVFTRGDEL  131 (307)
Q Consensus        82 ~pGpha~LLVl~~~~--RfT~------ee~~~l~~i~~~FG~~~--~~~~IVLfT~~D~L  131 (307)
                      ..+++++++|+++..  +|..      .....+..+..+.....  -...++|+++.|.+
T Consensus        63 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          63 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             CTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             ccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence            679999999998752  3322      12233344444443332  33688888888754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.002  Score=51.99  Aligned_cols=109  Identities=8%  Similarity=-0.023  Sum_probs=69.3

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|.+||||||+.+.+.... |..     -.|-......... .+..+.+.||+   |.......           .....
T Consensus         8 lG~~~vGKTsll~r~~~~~-~~~-----~pTiG~~~~~~~~-~~~~~~~~d~~---g~~~~~~~-----------~~~~~   66 (200)
T d2bcjq2           8 LGTGESGKSTFIKQMRIIH-GSG-----VPTTGIIEYPFDL-QSVIFRMVDVG---GQRSERRK-----------WIHCF   66 (200)
T ss_dssp             EESTTSSHHHHHHHHHHHT-SSC-----CCCCSCEEEEEEC-SSCEEEEEECC---CSTTGGGG-----------GGGGC
T ss_pred             ECCCCCCHHHHHHHHhCCC-CCC-----CceeeEEEEEEec-cceeeeecccc---cccccccc-----------ccccc
Confidence            6999999999999986543 532     1243344444556 77899999999   86432110           12346


Q ss_pred             CCCeEEEEEEeCCCCC-------C-HHHHHHHHHHHHhhccccC--CeEEEEEecCCCCC
Q 044972           83 DGIHAVLIVFSVRNRF-------S-EEEGAAIHSLESLFGKKVF--DYMIVVFTRGDELE  132 (307)
Q Consensus        83 pGpha~LLVl~~~~Rf-------T-~ee~~~l~~i~~~FG~~~~--~~~IVLfT~~D~L~  132 (307)
                      .+++++++|+++....       + ..-...+..+..+......  ...++|+++.|..+
T Consensus        67 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~  126 (200)
T d2bcjq2          67 ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE  126 (200)
T ss_dssp             SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHH
T ss_pred             cccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhh
Confidence            7899999999875221       1 1223345556666655543  46888888887653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.88  E-value=0.081  Score=48.68  Aligned_cols=96  Identities=11%  Similarity=0.024  Sum_probs=38.4

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh-c
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM-A   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l-s   81 (307)
                      +|+|||||||+...+.-+  ...+..+..           . .|+.|..+|.-   .|-.......+....+...+.. .
T Consensus        49 vG~~GvGKtaiv~~la~~--i~~~~vp~~-----------l-~~~~i~~ld~~---~l~ag~~~~g~~e~r~~~i~~~~~  111 (387)
T d1qvra2          49 IGEPGVGKTAIVEGLAQR--IVKGDVPEG-----------L-KGKRIVSLQMG---SLLAGAKYRGEFEERLKAVIQEVV  111 (387)
T ss_dssp             EECTTSCHHHHHHHHHHH--HHHTCSCTT-----------S-TTCEEEEECC--------------CHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH--HHhCCCCHH-----------H-cCceEEEeeHh---hhhcccCcchhHHHHHHHHHHHhc
Confidence            799999999998755422  111111111           2 56778888887   6653221122223333333322 2


Q ss_pred             CCCCeEEEEEEeCCCCC-----CHHHHHHHHHHHHhhccc
Q 044972           82 KDGIHAVLIVFSVRNRF-----SEEEGAAIHSLESLFGKK  116 (307)
Q Consensus        82 ~pGpha~LLVl~~~~Rf-----T~ee~~~l~~i~~~FG~~  116 (307)
                      ...+.+|||+-.+. .+     +.....+...|+-++...
T Consensus       112 ~~~~~~ilfide~h-~l~~~g~~~g~~d~a~~Lkp~L~rg  150 (387)
T d1qvra2         112 QSQGEVILFIDELH-TVVGAGKAEGAVDAGNMLKPALARG  150 (387)
T ss_dssp             TTCSSEEEEECCC--------------------HHHHHTT
T ss_pred             cCCCceEEEeccHH-HHhcCCCCCCcccHHHHHHHHHhCC
Confidence            23346666765553 22     222344556666665443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.73  E-value=0.0013  Score=52.45  Aligned_cols=19  Identities=26%  Similarity=-0.095  Sum_probs=17.2

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|+|.-
T Consensus         6 ~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           6 TGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHHhcC
Confidence            6999999999999999853

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.35  E-value=0.0093  Score=51.51  Aligned_cols=64  Identities=11%  Similarity=-0.070  Sum_probs=36.8

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      .||||+|||++++.|.+.                        -|.++.-|++|   .++.. .......+.|...+..+.
T Consensus        46 ~GppGtGKT~la~alA~~------------------------~~~~~~~i~~~---~~~~g-~~~~~~~~~i~~if~~A~   97 (246)
T d1d2na_          46 EGPPHSGKTALAAKIAEE------------------------SNFPFIKICSP---DKMIG-FSETAKCQAMKKIFDDAY   97 (246)
T ss_dssp             ECSTTSSHHHHHHHHHHH------------------------HTCSEEEEECG---GGCTT-CCHHHHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhhc------------------------ccccccccccc---ccccc-ccccchhhhhhhhhhhhh
Confidence            599999999999998531                        12344556777   55432 223333344444444444


Q ss_pred             CCCeEEEEEEeC
Q 044972           83 DGIHAVLIVFSV   94 (307)
Q Consensus        83 pGpha~LLVl~~   94 (307)
                      ..+-.|||+-.+
T Consensus        98 ~~~p~il~iDEi  109 (246)
T d1d2na_          98 KSQLSCVVVDDI  109 (246)
T ss_dssp             TSSEEEEEECCH
T ss_pred             hcccceeehhhh
Confidence            444466666554

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0033  Score=49.26  Aligned_cols=17  Identities=18%  Similarity=-0.208  Sum_probs=15.9

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|.+||||||++|.|+.
T Consensus         8 tG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           8 AAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999999984

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.97  E-value=0.0041  Score=48.17  Aligned_cols=17  Identities=6%  Similarity=-0.287  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+|||||||+++.|+.
T Consensus         8 ~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           8 IGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.76  E-value=0.0048  Score=47.91  Aligned_cols=17  Identities=12%  Similarity=-0.201  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+|||||||+++.|..
T Consensus         8 ~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           8 TGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999874

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=94.66  E-value=0.005  Score=48.12  Aligned_cols=21  Identities=19%  Similarity=-0.001  Sum_probs=16.9

Q ss_pred             CCCCCCcHHHHHHHH---HCCCcc
Q 044972            3 ACEYIKICTTTGNSI---LGRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsI---LG~~~F   23 (307)
                      .|+|||||||+++.|   +|-..+
T Consensus        10 ~G~pGsGKTTia~~La~~l~~~~i   33 (173)
T d1rkba_          10 TGTPGVGKTTLGKELASKSGLKYI   33 (173)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHCCcEE
Confidence            599999999999988   454433

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.0069  Score=54.92  Aligned_cols=16  Identities=6%  Similarity=-0.429  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|+|||||||++|.+.
T Consensus        60 tG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          60 TGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            5999999999999997

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.0065  Score=52.84  Aligned_cols=19  Identities=11%  Similarity=-0.319  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus        35 vG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          35 VGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            6999999999999999964

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.01  Score=49.70  Aligned_cols=110  Identities=9%  Similarity=-0.013  Sum_probs=52.8

Q ss_pred             CCCCCCcHHHHHHH----HHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNS----ILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCI   78 (307)
Q Consensus         3 ~~~tGsGKSStgNs----ILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv   78 (307)
                      +|++|+||++++..    |++...-...  .......|......  .-..+.++...    -.......+++ +++.+.+
T Consensus        30 ~Gp~G~GKtt~a~~~a~~l~~~~~~~~~--~~~~~~~~~~i~~~--~~~~~~~~~~~----~~~~~i~~~~i-r~l~~~~  100 (207)
T d1a5ta2          30 QALPGMGDDALIYALSRYLLCQQPQGHK--SCGHCRGCQLMQAG--THPDYYTLAPE----KGKNTLGVDAV-REVTEKL  100 (207)
T ss_dssp             ECCTTSCHHHHHHHHHHHHTCSSCBTTB--CCSCSHHHHHHHHT--CCTTEEEECCC----TTCSSBCHHHH-HHHHHHT
T ss_pred             ECCCCCcHHHHHHHHHHhcccccccccc--cccccchhhhhhhc--cccccchhhhh----hcccccccchh-hHHhhhh
Confidence            69999999999974    4444321111  11111222211000  11122333222    11122333444 4455544


Q ss_pred             HhcC-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           79 GMAK-DGIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        79 ~ls~-pGpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      ...+ .|-.-|+++-.++ +++.+-..++-.+.+-    --.+++++||
T Consensus       101 ~~~~~~~~~kviIide~d-~l~~~a~n~Llk~lEe----p~~~~~fIl~  144 (207)
T d1a5ta2         101 NEHARLGGAKVVWVTDAA-LLTDAAANALLKTLEE----PPAETWFFLA  144 (207)
T ss_dssp             TSCCTTSSCEEEEESCGG-GBCHHHHHHHHHHHTS----CCTTEEEEEE
T ss_pred             hhccccCccceEEechhh-hhhhhhhHHHHHHHHh----hcccceeeee
Confidence            4433 3445566666777 9998877665555542    2356666654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.19  E-value=0.0074  Score=48.88  Aligned_cols=16  Identities=6%  Similarity=-0.213  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|.|||||||++|.|.
T Consensus         8 ~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           8 VGLPARGKTYISKKLT   23 (213)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999986

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.13  E-value=0.0083  Score=46.83  Aligned_cols=17  Identities=6%  Similarity=-0.247  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+|||||||+++.|..
T Consensus        13 ~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2          13 LGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             ECCTTSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.09  E-value=0.0078  Score=52.28  Aligned_cols=19  Identities=11%  Similarity=-0.415  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus        34 vG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          34 AGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHHhh
Confidence            7999999999999999964

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.0081  Score=52.45  Aligned_cols=19  Identities=5%  Similarity=-0.274  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus        46 vG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          46 VGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhccc
Confidence            6999999999999999964

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.01  E-value=0.0096  Score=46.66  Aligned_cols=16  Identities=13%  Similarity=-0.207  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||+++.|-
T Consensus        11 ~G~~GsGKTT~~~~La   26 (174)
T d1y63a_          11 TGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            5999999999999874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.01  Score=45.23  Aligned_cols=16  Identities=13%  Similarity=-0.053  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||++..|.
T Consensus         8 ~G~~GsGKSTvak~La   23 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999873

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.067  Score=46.31  Aligned_cols=16  Identities=13%  Similarity=-0.249  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .||||+|||++++.|-
T Consensus        51 ~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          51 VGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             eCCCCCCccHHHHHHH
Confidence            5999999999999886

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.76  E-value=0.024  Score=49.24  Aligned_cols=20  Identities=25%  Similarity=-0.173  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||+++.|.|-..
T Consensus        35 iG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          35 LGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             ECSTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCChHHHHHHHHhcCCC
Confidence            69999999999999999753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.73  E-value=0.011  Score=51.08  Aligned_cols=20  Identities=15%  Similarity=-0.348  Sum_probs=17.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||+++.|.|-..
T Consensus        37 iG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          37 MGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCCCcchhhHhccCCCC
Confidence            69999999999999999653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.72  E-value=0.13  Score=42.50  Aligned_cols=16  Identities=13%  Similarity=-0.240  Sum_probs=13.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+||+||||+...++
T Consensus        39 ~Gp~G~GKTt~~~~la   54 (252)
T d1sxje2          39 YGPNGTGKKTRCMALL   54 (252)
T ss_dssp             ECSTTSSHHHHHHTHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999886553

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.72  E-value=0.0084  Score=52.40  Aligned_cols=19  Identities=11%  Similarity=-0.272  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus        47 vG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          47 VGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EECTTSSHHHHHHHHTTTT
T ss_pred             ECCCCChHHHHHHHHhccc
Confidence            6999999999999999964

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.67  E-value=0.011  Score=49.76  Aligned_cols=19  Identities=16%  Similarity=-0.351  Sum_probs=17.4

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|--
T Consensus        33 ~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          33 HGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCChHHHHHHHHhccc
Confidence            6999999999999999964

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.64  E-value=0.0093  Score=52.88  Aligned_cols=19  Identities=21%  Similarity=-0.137  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|+|--
T Consensus        68 vG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          68 TGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EESTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            6999999999999999964

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.013  Score=50.41  Aligned_cols=19  Identities=11%  Similarity=-0.211  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.|+||||++|.|.|-.
T Consensus        31 iG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          31 VGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             BCCTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999953

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.59  E-value=0.025  Score=49.09  Aligned_cols=17  Identities=12%  Similarity=-0.328  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||+++++|.+
T Consensus        47 ~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          47 YGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             BCCTTSSHHHHHHHHHH
T ss_pred             ECCCCCcchhHHHHHHH
Confidence            59999999999999855

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.52  E-value=0.013  Score=50.82  Aligned_cols=20  Identities=25%  Similarity=-0.109  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.|+|||||+|.|.|--.
T Consensus        38 iGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          38 IGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCCcHHHHHHHHhCCCC
Confidence            69999999999999999753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.013  Score=45.67  Aligned_cols=17  Identities=12%  Similarity=-0.421  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+||+|||||...|+.
T Consensus         7 tG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           7 TGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             ESCCSSCHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999999999874

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.43  E-value=0.012  Score=45.75  Aligned_cols=16  Identities=0%  Similarity=-0.230  Sum_probs=14.0

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|.|||||||++..+.
T Consensus        12 ~G~~GsGKTTia~~La   27 (183)
T d1m8pa3          12 TGYMNSGKDAIARALQ   27 (183)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.43  E-value=0.034  Score=47.87  Aligned_cols=17  Identities=12%  Similarity=-0.148  Sum_probs=15.5

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+|||++++.|.+
T Consensus        48 ~GppGtGKT~la~aia~   64 (247)
T d1ixza_          48 VGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCChhHHHHHHHH
Confidence            59999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.0065  Score=49.85  Aligned_cols=46  Identities=9%  Similarity=0.015  Sum_probs=28.8

Q ss_pred             CCCCCCcHHHHHHHHHCCC--ccccccCCCCCCceeEEEEEEEeCCeEEEEEe
Q 044972            3 ACEYIKICTTTGNSILGRR--AFKSKVGSSEDTKTCEMQRTMLKDGQVVNVID   53 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~--~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VID   53 (307)
                      +||+||||||+.+.++.+.  .|...   .+.|+... ..++. +|....+|+
T Consensus         9 ~Gpsg~GK~tl~~~L~~~~~~~~~~~---v~~TTR~~-R~~E~-~G~dY~Fvs   56 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLITKHPDRFAYP---IPHTTRPP-KKDEE-NGKNYYFVS   56 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTTTEECC---CCEECSCC----CC-BTTTBEECC
T ss_pred             ECCCCCCHHHHHHHHHHhCCcCeeec---cccccCCC-CCccc-cCccceeee
Confidence            6999999999999998643  35422   24444332 24566 777666654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.025  Score=49.78  Aligned_cols=155  Identities=12%  Similarity=0.087  Sum_probs=76.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHhcC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGMAK   82 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~ls~   82 (307)
                      +|+|||||||+...+.-+= ..... +.           .. .++.|..+|+.   .|........+..+.+..-+....
T Consensus        45 VG~~GvGKTalv~~la~ri-~~~~v-p~-----------~l-~~~~i~~l~~~---~liag~~~~g~~e~r~~~i~~~~~  107 (268)
T d1r6bx2          45 VGESGVGKTAIAEGLAWRI-VQGDV-PE-----------VM-ADCTIYSLDIG---SLLAGTKYRGDFEKRFKALLKQLE  107 (268)
T ss_dssp             ECCTTSSHHHHHHHHHHHH-HHTCS-CG-----------GG-TTCEEEECCCC------CCCCCSSCHHHHHHHHHHHHS
T ss_pred             ECCCCCcHHHHHHHHHHHH-HhCCc-cc-----------cc-ccceeEEeeec---hHhccCccchhHHHHHHHHHHHhh
Confidence            7999999999998764331 11111 10           12 56778888888   665322212222222332233333


Q ss_pred             CCCeEEEEEEeCCC-----CCCHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCcccHHHhcCCCCCchHHHHHHhc
Q 044972           83 DGIHAVLIVFSVRN-----RFSEEEGAAIHSLESLFGKKVFDYMIVVFTRGDELEDNDETLEDYLGPECPKPLKEILQLC  157 (307)
Q Consensus        83 pGpha~LLVl~~~~-----RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT~~D~L~~~~~sie~yl~~~~~~~Lk~Li~~C  157 (307)
                      ...+++||+-.+..     .-+.....+...++-++...  .-.+|..|-.++       +..|+..  ++.|       
T Consensus       108 ~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg--~i~vIgatT~ee-------y~~~~e~--d~al-------  169 (268)
T d1r6bx2         108 QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTYQE-------FSNIFEK--DRAL-------  169 (268)
T ss_dssp             SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC--CCEEEEEECHHH-------HHCCCCC--TTSS-------
T ss_pred             ccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCC--CCeEEEeCCHHH-------HHHHHhh--cHHH-------
Confidence            45667777654431     11223455666666555432  334555554332       2334443  2322       


Q ss_pred             CCeEEEEcCCCCchhhH---H-------HHcCCCCCChHHHHHHH
Q 044972          158 DNRRVLFDNKTKDAAKR---T-------EQNGGQPYIDEIFAELK  192 (307)
Q Consensus       158 g~R~~~fnNk~~~~~~~---~-------~~n~g~~yt~~~~~~~e  192 (307)
                      ..|+....=...+..+-   .       +...+-.|+++.+..+=
T Consensus       170 ~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v  214 (268)
T d1r6bx2         170 ARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV  214 (268)
T ss_dssp             GGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHH
Confidence            23455555444443321   1       15667788887776554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.22  E-value=0.014  Score=45.69  Aligned_cols=16  Identities=13%  Similarity=-0.195  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|+|||||||+++.|.
T Consensus         7 ~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           7 TGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999884

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.15  E-value=0.016  Score=45.27  Aligned_cols=18  Identities=6%  Similarity=-0.175  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|+|||||||+++.|..+
T Consensus        10 ~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1          10 SGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EECTTSCHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.018  Score=49.73  Aligned_cols=20  Identities=15%  Similarity=-0.222  Sum_probs=18.0

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||++|.|.|-..
T Consensus        32 iGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          32 VGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             ECCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCChHHHHHHHHhcCCC
Confidence            69999999999999999753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.015  Score=45.39  Aligned_cols=17  Identities=0%  Similarity=-0.271  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+|||||||++..|..
T Consensus        12 ~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_          12 MGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.01  E-value=0.017  Score=50.33  Aligned_cols=20  Identities=20%  Similarity=-0.195  Sum_probs=18.1

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|+.||||||++|.|.|--.
T Consensus        36 iG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          36 IGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             ECSTTSSHHHHHHHHTTSSC
T ss_pred             ECCCCCcHHHHHHHHHCCCc
Confidence            69999999999999999753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.93  E-value=0.018  Score=49.78  Aligned_cols=21  Identities=19%  Similarity=-0.366  Sum_probs=18.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCcc
Q 044972            3 ACEYIKICTTTGNSILGRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F   23 (307)
                      +|+.|+||||++|.|.|--..
T Consensus        34 vG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          34 IGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             ECCTTSSHHHHHHHHTTSSCC
T ss_pred             ECCCCCCHHHHHHHHhcCCCC
Confidence            699999999999999997543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.90  E-value=0.019  Score=44.57  Aligned_cols=17  Identities=0%  Similarity=-0.310  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+|||||||+++.|..
T Consensus         9 ~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           9 NGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.86  E-value=0.015  Score=46.32  Aligned_cols=16  Identities=19%  Similarity=-0.157  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|++||||||+.|.|.
T Consensus        28 ~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          28 DGLSRSGKTTLANQLS   43 (198)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999985

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.77  E-value=0.019  Score=50.20  Aligned_cols=19  Identities=11%  Similarity=-0.424  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|+.||||||+++.|.|-.
T Consensus        34 iG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          34 IGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHHcCc
Confidence            6999999999999999965

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.70  E-value=0.022  Score=49.47  Aligned_cols=19  Identities=26%  Similarity=-0.183  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++|+||||+++.|.|-.
T Consensus        38 iGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          38 LGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            6999999999999999975

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.0045  Score=52.22  Aligned_cols=20  Identities=5%  Similarity=-0.114  Sum_probs=17.3

Q ss_pred             CCCCCCCcHHHHHHHHHCCC
Q 044972            2 CACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~~   21 (307)
                      .+||+||||||+.|.++-..
T Consensus         7 i~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           7 VSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EECCTTSCHHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHHhhC
Confidence            36999999999999998653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.67  E-value=0.01  Score=51.94  Aligned_cols=20  Identities=15%  Similarity=-0.386  Sum_probs=17.9

Q ss_pred             CCCCCCcHHHHHHHHHCCCc
Q 044972            3 ACEYIKICTTTGNSILGRRA   22 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~   22 (307)
                      +|++||||||+++.|+|--.
T Consensus        50 vG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          50 VGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             ECSTTSSHHHHHTTTTTSSC
T ss_pred             ECCCCCcHHHHHHHHHhcCC
Confidence            69999999999999999643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.61  E-value=0.017  Score=49.91  Aligned_cols=19  Identities=16%  Similarity=-0.305  Sum_probs=17.7

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|-.
T Consensus        32 iGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          32 LGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             ECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhcCc
Confidence            6999999999999999964

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.51  E-value=0.027  Score=48.94  Aligned_cols=19  Identities=21%  Similarity=-0.227  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|-.
T Consensus        37 iG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          37 LGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             ECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHHcCc
Confidence            6999999999999999965

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.49  E-value=0.019  Score=52.96  Aligned_cols=19  Identities=16%  Similarity=-0.256  Sum_probs=16.9

Q ss_pred             CCCCCCCcHHHHHHHHHCC
Q 044972            2 CACEYIKICTTTGNSILGR   20 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG~   20 (307)
                      .+|+||||||||++++|..
T Consensus       163 vtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         163 VTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EECSTTSCHHHHHHHHHHH
T ss_pred             EEcCCCCCccHHHHHHhhh
Confidence            4799999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.011  Score=47.15  Aligned_cols=15  Identities=13%  Similarity=-0.245  Sum_probs=13.9

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|.|||||||+++.|
T Consensus        25 ~G~pGSGKTTiAk~L   39 (195)
T d1x6va3          25 TGLSGAGKTTVSMAL   39 (195)
T ss_dssp             ESSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            499999999999977

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.41  E-value=0.085  Score=45.24  Aligned_cols=17  Identities=6%  Similarity=-0.285  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+|||++++.|.+
T Consensus        44 ~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          44 YGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCCchHHHHHHHH
Confidence            59999999999998765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.27  E-value=0.027  Score=48.93  Aligned_cols=19  Identities=11%  Similarity=-0.331  Sum_probs=17.6

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      .||.||||||+++.|.|--
T Consensus        30 iGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          30 LGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            5999999999999999964

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.20  E-value=0.025  Score=44.78  Aligned_cols=17  Identities=12%  Similarity=-0.279  Sum_probs=15.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|.+||||||+++.|+.
T Consensus         7 ~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            69999999999999975

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.17  E-value=0.026  Score=44.70  Aligned_cols=15  Identities=13%  Similarity=-0.305  Sum_probs=14.0

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      .|+|||||||.+..|
T Consensus         6 ~G~pGSGKsT~a~~L   20 (182)
T d1zina1           6 MGLPGAGKGTQAEKI   20 (182)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999988

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.021  Score=49.54  Aligned_cols=19  Identities=5%  Similarity=-0.424  Sum_probs=17.5

Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 044972            3 ACEYIKICTTTGNSILGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~   21 (307)
                      +|++||||||+++.|.|-.
T Consensus        37 iG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          37 IGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EESTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHcCCc
Confidence            6999999999999999964

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=92.02  E-value=0.028  Score=44.71  Aligned_cols=19  Identities=26%  Similarity=0.137  Sum_probs=16.2

Q ss_pred             CCCCCCcHHHHHHHH---HCCC
Q 044972            3 ACEYIKICTTTGNSI---LGRR   21 (307)
Q Consensus         3 ~~~tGsGKSStgNsI---LG~~   21 (307)
                      .|+|||||||+|+.+   ||-.
T Consensus         8 ~G~~GsGKSTia~~LA~~Lg~~   29 (170)
T d1e6ca_           8 VGARGCGMTTVGRELARALGYE   29 (170)
T ss_dssp             ESCTTSSHHHHHHHHHHHHTCE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCC
Confidence            599999999999987   5655

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.90  E-value=0.022  Score=44.78  Aligned_cols=16  Identities=6%  Similarity=-0.419  Sum_probs=14.5

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|.|||||||++|.|-
T Consensus         7 ~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           7 TGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999884

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.90  E-value=0.03  Score=44.34  Aligned_cols=15  Identities=13%  Similarity=-0.144  Sum_probs=13.7

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      .|.|||||||+|..+
T Consensus         7 iG~~G~GKSTig~~L   21 (165)
T d2iyva1           7 VGLPGSGKSTIGRRL   21 (165)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            499999999999877

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.86  E-value=0.025  Score=45.71  Aligned_cols=16  Identities=13%  Similarity=-0.244  Sum_probs=14.1

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||++..|-
T Consensus         9 ~GppGsGKsT~a~~La   24 (189)
T d1zaka1           9 SGAPASGKGTQCELIK   24 (189)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998773

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.69  E-value=0.024  Score=45.92  Aligned_cols=18  Identities=11%  Similarity=-0.439  Sum_probs=15.6

Q ss_pred             CCCCCCCcHHHHHHHHHC
Q 044972            2 CACEYIKICTTTGNSILG   19 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG   19 (307)
                      .+|.|||||||++..++-
T Consensus        19 l~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          19 AVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             EECCTTSSHHHHHHHHTG
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            479999999999998853

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.59  E-value=0.034  Score=44.08  Aligned_cols=16  Identities=6%  Similarity=-0.247  Sum_probs=14.2

Q ss_pred             CCCCCCCcHHHHHHHH
Q 044972            2 CACEYIKICTTTGNSI   17 (307)
Q Consensus         2 ~~~~tGsGKSStgNsI   17 (307)
                      ..|+|||||||+|..|
T Consensus         5 liG~~GsGKsTi~k~L   20 (161)
T d1viaa_           5 FIGFMGSGKSTLARAL   20 (161)
T ss_dssp             EECCTTSCHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            3599999999999877

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.58  E-value=0.023  Score=51.21  Aligned_cols=18  Identities=22%  Similarity=-0.210  Sum_probs=16.5

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+|||||||+.|+|++.
T Consensus       172 ~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         172 CGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             EESTTSSHHHHHHHHGGG
T ss_pred             EeeccccchHHHHHHhhh
Confidence            699999999999999964

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.052  Score=45.61  Aligned_cols=76  Identities=14%  Similarity=-0.004  Sum_probs=44.7

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCCCCCCCCCCCcCHHHHHHHHHHHHHh-c
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTPAIARLFDSSADFEFVSKEIVKCIGM-A   81 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~kcv~l-s   81 (307)
                      +|+|||||||+.-.+.-+=+-  +..+.           .. .+++|..+|+-   .|-.......+..+.+...+.. .
T Consensus        49 vG~pGVGKTalv~~LA~ri~~--~~vp~-----------~L-~~~~i~~ld~~---~LiAg~~~rG~~E~rl~~il~e~~  111 (195)
T d1jbka_          49 IGEPGVGKTAIVEGLAQRIIN--GEVPE-----------GL-KGRRVLALDMG---ALVAGAKYRGEFEERLKGVLNDLA  111 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHH--TCSCG-----------GG-TTCEEEEECHH---HHHTTTCSHHHHHHHHHHHHHHHH
T ss_pred             EecCCcccHHHHHHHHHHHHh--CCCCH-----------HH-cCceEEEeeHH---HHhccCCccHHHHHHHHHHHHHHh
Confidence            799999999998665432111  11111           12 66788889988   7654333344555555544433 2


Q ss_pred             CCCCeEEEEEEeCC
Q 044972           82 KDGIHAVLIVFSVR   95 (307)
Q Consensus        82 ~pGpha~LLVl~~~   95 (307)
                      ....++|||+-.+.
T Consensus       112 ~~~~~iILfIDeih  125 (195)
T d1jbka_         112 KQEGNVILFIDELH  125 (195)
T ss_dssp             HSTTTEEEEEETGG
T ss_pred             cCCCcEEEEcchHH
Confidence            33457888887664

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.56  E-value=0.038  Score=46.01  Aligned_cols=18  Identities=11%  Similarity=-0.274  Sum_probs=15.8

Q ss_pred             CCCCCCCcHHHHHHHHHC
Q 044972            2 CACEYIKICTTTGNSILG   19 (307)
Q Consensus         2 ~~~~tGsGKSStgNsILG   19 (307)
                      ++|+||+|||++.+.++.
T Consensus        51 l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          51 SIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             CTTCCSSSHHHHHHHHHH
T ss_pred             eECCCCCCHHHHHHHHHH
Confidence            469999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.47  E-value=0.025  Score=45.66  Aligned_cols=16  Identities=13%  Similarity=-0.267  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|+|||||||++..|.
T Consensus        12 ~G~pGSGKsT~a~~La   27 (194)
T d1qf9a_          12 LGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999998875

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=91.43  E-value=0.026  Score=47.09  Aligned_cols=17  Identities=18%  Similarity=-0.310  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+||||+++.|.+
T Consensus        41 ~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          41 FGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=91.32  E-value=0.037  Score=44.32  Aligned_cols=16  Identities=13%  Similarity=-0.228  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||.+..|.
T Consensus         6 ~G~pGSGKsT~a~~La   21 (182)
T d1s3ga1           6 MGLPGAGKGTQADRIV   21 (182)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998775

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.034  Score=45.60  Aligned_cols=16  Identities=6%  Similarity=-0.101  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|++||||||+.+.|.
T Consensus         8 ~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           8 SGGTASGKSSVCAKIV   23 (213)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.20  E-value=0.024  Score=47.50  Aligned_cols=17  Identities=12%  Similarity=-0.109  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+||+|||+++..|.+
T Consensus        38 ~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          38 GGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             ECCTTSCTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999998865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.14  E-value=0.039  Score=49.58  Aligned_cols=16  Identities=13%  Similarity=-0.334  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||+++.++
T Consensus        57 tG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          57 TGVPGVGKSTTIDALG   72 (323)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            5999999999999987

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.03  E-value=0.042  Score=43.86  Aligned_cols=16  Identities=6%  Similarity=-0.363  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||.+..|.
T Consensus         6 ~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999884

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=90.97  E-value=0.043  Score=44.17  Aligned_cols=16  Identities=6%  Similarity=-0.336  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||.+..|-
T Consensus         9 ~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           9 LGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.044  Score=43.03  Aligned_cols=17  Identities=12%  Similarity=-0.081  Sum_probs=15.4

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+||+|||+++..++.
T Consensus        29 ~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          29 FGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            69999999999998875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.027  Score=43.91  Aligned_cols=15  Identities=13%  Similarity=-0.230  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|+.||||||++.+|
T Consensus        30 ~G~NGsGKStil~Ai   44 (222)
T d1qhla_          30 SGGNGAGKSTTMAAF   44 (222)
T ss_dssp             HSCCSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999998

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.053  Score=43.53  Aligned_cols=16  Identities=13%  Similarity=-0.301  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||.+..|.
T Consensus         7 ~GppGSGKsT~a~~La   22 (194)
T d1teva_           7 LGGPGAGKGTQCARIV   22 (194)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998774

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.24  E-value=0.049  Score=43.71  Aligned_cols=18  Identities=11%  Similarity=-0.136  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +||+||||||+.+.++.+
T Consensus         8 ~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           8 SGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.14  E-value=0.046  Score=44.26  Aligned_cols=17  Identities=12%  Similarity=-0.238  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+|||||||.+..|.-
T Consensus        14 ~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          14 VGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998854

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=90.13  E-value=0.049  Score=45.25  Aligned_cols=17  Identities=24%  Similarity=-0.199  Sum_probs=14.8

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+|||++++.|..
T Consensus        41 ~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          41 AGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHh
Confidence            59999999999997753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.061  Score=45.27  Aligned_cols=94  Identities=12%  Similarity=0.041  Sum_probs=47.5

Q ss_pred             CCCCCCcHHHHHHHHH----CCCccccccCCCCCCceeEEEEEEEeCCe--EEEEEeCCCCCCCCCCCcCHHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL----GRRAFKSKVGSSEDTKTCEMQRTMLKDGQ--VVNVIDTPAIARLFDSSADFEFVSKEIVK   76 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL----G~~~F~s~~s~~svT~~c~~~~~~~~~Gr--~v~VIDTP~~~Gl~Dt~~~~~~i~~eI~k   76 (307)
                      .|+||+||++++..+.    +..... . ....+...|...   . .+.  .+..+|..   +..    .-+.+.. +.+
T Consensus        40 ~Gp~G~GKtt~a~~~~~~l~~~~~~~-~-~~~~~~~~~~~i---~-~~~~~~~~~~~~~---~~~----~i~~ir~-~~~  105 (239)
T d1njfa_          40 SGTRGVGKTSIARLLAKGLNCETGIT-A-TPCGVCDNCREI---E-QGRFVDLIEIDAA---SRT----KVEDTRD-LLD  105 (239)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHCTTCSC-S-SCCSCSHHHHHH---H-HTCCTTEEEEETT---CSS----SHHHHHH-HHH
T ss_pred             ECCCCCcHHHHHHHHHHHhcCccccc-c-CccccchHHHHH---H-cCCCCeEEEecch---hcC----CHHHHHH-HHH
Confidence            5999999999987653    332211 1 111222233211   0 222  34556655   321    2233332 332


Q ss_pred             HHH-hcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Q 044972           77 CIG-MAKDGIHAVLIVFSVRNRFSEEEGAAIHSLES  111 (307)
Q Consensus        77 cv~-ls~pGpha~LLVl~~~~RfT~ee~~~l~~i~~  111 (307)
                      -+. ....|.+-|+++-.++ .++.+-..+|..+.+
T Consensus       106 ~~~~~~~~~~~kviiIde~d-~l~~~~q~~Llk~lE  140 (239)
T d1njfa_         106 NVQYAPARGRFKVYLIDEVH-MLSRHSFNALLKTLE  140 (239)
T ss_dssp             SCCCSCSSSSSEEEEEETGG-GSCHHHHHHHHHHHH
T ss_pred             HHHhccccCCCEEEEEECcc-cCCHHHHHHHHHHHh
Confidence            222 2234666677777787 899877766555544

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.02  E-value=0.047  Score=43.45  Aligned_cols=16  Identities=13%  Similarity=-0.087  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||.+..|.
T Consensus         6 ~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998774

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.91  E-value=0.054  Score=44.77  Aligned_cols=17  Identities=12%  Similarity=-0.296  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+||+|||++.+.|+.
T Consensus        49 ~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          49 LGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998863

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.83  E-value=0.14  Score=41.53  Aligned_cols=18  Identities=6%  Similarity=-0.112  Sum_probs=15.8

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +|+||+|||+++..++-.
T Consensus        40 ~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          40 FGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESTTSSHHHHHHHHTTT
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            699999999999988744

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.54  E-value=0.067  Score=42.79  Aligned_cols=16  Identities=6%  Similarity=-0.319  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|+|||||||.+..|-
T Consensus         8 ~G~pGSGKtT~a~~La   23 (180)
T d1akya1           8 IGPPGAGKGTQAPNLQ   23 (180)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998884

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.29  E-value=0.072  Score=44.03  Aligned_cols=17  Identities=18%  Similarity=-0.230  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+|||+++..|..
T Consensus        51 ~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          51 AGPPGVGKTTAALALAR   67 (231)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999999987764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=89.07  E-value=0.075  Score=43.32  Aligned_cols=17  Identities=12%  Similarity=-0.259  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+|||||||++..|.-
T Consensus        12 iG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1          12 MGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.96  E-value=0.076  Score=42.80  Aligned_cols=17  Identities=6%  Similarity=-0.298  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|+|||||||.+..|..
T Consensus        14 ~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          14 LGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988854

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=88.76  E-value=0.081  Score=42.71  Aligned_cols=18  Identities=6%  Similarity=-0.311  Sum_probs=15.1

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      .|||||||||.+-.|..+
T Consensus         9 ~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           9 DGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999888543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.61  E-value=0.078  Score=42.90  Aligned_cols=18  Identities=6%  Similarity=-0.184  Sum_probs=16.3

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +||+||||+|+.+.++.+
T Consensus         7 ~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           7 SGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            699999999999999765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.57  E-value=0.11  Score=42.61  Aligned_cols=17  Identities=12%  Similarity=-0.369  Sum_probs=14.7

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+||||++..|..
T Consensus        39 ~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          39 YGPPGTGKTSTILALTK   55 (237)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHHH
Confidence            59999999999887764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.54  E-value=0.1  Score=42.39  Aligned_cols=16  Identities=13%  Similarity=-0.157  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      -|||||||||.+-.|.
T Consensus         9 dGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           9 DGPASSGKSTVAKIIA   24 (223)
T ss_dssp             ECSSCSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998884

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.37  E-value=0.1  Score=42.41  Aligned_cols=18  Identities=6%  Similarity=-0.221  Sum_probs=16.0

Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 044972            3 ACEYIKICTTTGNSILGR   20 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~   20 (307)
                      +||+||||+|+.+.++-.
T Consensus         6 ~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           6 SGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            699999999999998754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=0.12  Score=42.50  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=22.9

Q ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhhccccCCeEEEEEe
Q 044972           84 GIHAVLIVFSVRNRFSEEEGAAIHSLESLFGKKVFDYMIVVFT  126 (307)
Q Consensus        84 Gpha~LLVl~~~~RfT~ee~~~l~~i~~~FG~~~~~~~IVLfT  126 (307)
                      +.+-++++-.++ +++.....++....+.    ...+++++++
T Consensus       100 ~~~kviiiDe~d-~~~~~~~~~ll~~~e~----~~~~~~~i~~  137 (224)
T d1sxjb2         100 GKHKIVILDEAD-SMTAGAQQALRRTMEL----YSNSTRFAFA  137 (224)
T ss_dssp             TCCEEEEEESGG-GSCHHHHHTTHHHHHH----TTTTEEEEEE
T ss_pred             cceEEEEEeccc-ccchhHHHHHhhhccc----cccceeeeec
Confidence            445566666677 8998887776544442    3445555554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=0.12  Score=42.85  Aligned_cols=17  Identities=12%  Similarity=-0.302  Sum_probs=15.2

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+||||++..|..
T Consensus        58 ~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          58 YGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=86.13  E-value=0.1  Score=41.75  Aligned_cols=15  Identities=7%  Similarity=-0.175  Sum_probs=13.7

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|.+||||||+.+.|
T Consensus         9 tG~~gSGKstva~~l   23 (191)
T d1uf9a_           9 TGNIGSGKSTVAALL   23 (191)
T ss_dssp             EECTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            699999999999976

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.87  E-value=0.13  Score=45.40  Aligned_cols=16  Identities=13%  Similarity=-0.230  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|.+||||||+.+.|.
T Consensus        33 ~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          33 SGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999998774

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=85.18  E-value=0.17  Score=42.00  Aligned_cols=17  Identities=6%  Similarity=-0.277  Sum_probs=15.0

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .|.|||||||+++.|.-
T Consensus        30 tGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          30 TGLSASGKSTLAVELEH   46 (208)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998853

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.15  E-value=0.17  Score=41.41  Aligned_cols=17  Identities=12%  Similarity=-0.349  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      .||||+||||++..|..
T Consensus        41 ~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          41 YGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCChhHHHHHHHH
Confidence            59999999999987753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.99  E-value=0.12  Score=41.38  Aligned_cols=16  Identities=19%  Similarity=-0.267  Sum_probs=14.4

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|..||||||+++.|-
T Consensus        15 eG~~GsGKTTl~~~L~   30 (197)
T d2vp4a1          15 EGNIGSGKTTYLNHFE   30 (197)
T ss_dssp             ECSTTSCHHHHHHTTG
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=84.72  E-value=0.16  Score=41.75  Aligned_cols=16  Identities=13%  Similarity=-0.110  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|.+||||||+.|.+-
T Consensus         9 tG~igSGKStv~~~l~   24 (208)
T d1vhta_           9 TGGIGSGKSTVANAFA   24 (208)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHH
Confidence            6999999999999764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.53  E-value=0.53  Score=40.76  Aligned_cols=17  Identities=18%  Similarity=-0.173  Sum_probs=14.6

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|++|+|||++.-.+..
T Consensus        63 ~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          63 YGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ecCCccchHHHHHHHHH
Confidence            59999999999977765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=84.12  E-value=0.17  Score=44.47  Aligned_cols=17  Identities=6%  Similarity=-0.306  Sum_probs=15.3

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +||||+|||.++.+|..
T Consensus        55 ~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          55 IGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            59999999999999864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=84.03  E-value=0.17  Score=41.32  Aligned_cols=21  Identities=19%  Similarity=-0.088  Sum_probs=16.1

Q ss_pred             CCCCCCcHHHHHHHHH--CCCcc
Q 044972            3 ACEYIKICTTTGNSIL--GRRAF   23 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL--G~~~F   23 (307)
                      +|.+||||||+++.+-  |-.+|
T Consensus         8 TG~igSGKStv~~~l~~~G~~vi   30 (205)
T d1jjva_           8 TGGIGSGKTTIANLFTDLGVPLV   30 (205)
T ss_dssp             ECSTTSCHHHHHHHHHTTTCCEE
T ss_pred             ECCCCCCHHHHHHHHHHCCCeEE
Confidence            6999999999999663  44444

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=83.89  E-value=0.18  Score=41.39  Aligned_cols=16  Identities=0%  Similarity=-0.458  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      .|++|+||||+++.++
T Consensus        35 ~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          35 LGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHH
Confidence            4999999999999775

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=83.67  E-value=0.15  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=17.8

Q ss_pred             CCCCCCcHHHHHHHHH---CCCccc
Q 044972            3 ACEYIKICTTTGNSIL---GRRAFK   24 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL---G~~~F~   24 (307)
                      +||||+|||+++++|.   |.+++.
T Consensus       160 ~g~~~~gk~~~~~~~~~~~~~~~i~  184 (362)
T d1svma_         160 KGPIDSGKTTLAAALLELCGGKALN  184 (362)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            6999999999999985   555443

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.52  E-value=0.16  Score=41.56  Aligned_cols=17  Identities=12%  Similarity=-0.087  Sum_probs=14.9

Q ss_pred             CCCCCCcHHHHHHHHHC
Q 044972            3 ACEYIKICTTTGNSILG   19 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG   19 (307)
                      +|+||+|||+++-.++-
T Consensus        42 ~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          42 FGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999988763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=83.37  E-value=0.16  Score=45.28  Aligned_cols=15  Identities=20%  Similarity=-0.024  Sum_probs=14.0

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|++||||||+.+.|
T Consensus        86 aG~sgSGKSTla~~L  100 (308)
T d1sq5a_          86 AGSVAVGKSTTARVL  100 (308)
T ss_dssp             EECTTSSHHHHHHHH
T ss_pred             eCCCCCCCcHHHHHH
Confidence            699999999999987

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.13  E-value=0.22  Score=43.81  Aligned_cols=15  Identities=7%  Similarity=-0.245  Sum_probs=14.3

Q ss_pred             CCCCCCcHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSI   17 (307)
Q Consensus         3 ~~~tGsGKSStgNsI   17 (307)
                      +|++|||||+++.+|
T Consensus        31 ~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          31 IGPNGSGKSNMMDAI   45 (427)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            699999999999998

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=81.47  E-value=0.22  Score=40.06  Aligned_cols=16  Identities=13%  Similarity=-0.238  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHHHH
Q 044972            3 ACEYIKICTTTGNSIL   18 (307)
Q Consensus         3 ~~~tGsGKSStgNsIL   18 (307)
                      +|+||+|||+++..++
T Consensus        40 ~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          40 AGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            6999999999997775

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.90  E-value=2.9  Score=35.89  Aligned_cols=32  Identities=19%  Similarity=0.066  Sum_probs=22.6

Q ss_pred             CCCCCCcHHHHHHHHHCCCccccccCCCCCCceeEEEEEEEeCCeEEEEEeCC
Q 044972            3 ACEYIKICTTTGNSILGRRAFKSKVGSSEDTKTCEMQRTMLKDGQVVNVIDTP   55 (307)
Q Consensus         3 ~~~tGsGKSStgNsILG~~~F~s~~s~~svT~~c~~~~~~~~~Gr~v~VIDTP   55 (307)
                      +|++|+|||++.=.+...               ++     - .|..++.|||.
T Consensus        66 ~G~~~~GKT~l~l~~~~~---------------~q-----~-~g~~~vyIDtE   97 (269)
T d1mo6a1          66 YGPESSGKTTVALHAVAN---------------AQ-----A-AGGVAAFIDAE   97 (269)
T ss_dssp             ECSSSSSHHHHHHHHHHH---------------HH-----H-TTCEEEEEESS
T ss_pred             ecCCCcHHHHHHHHHHHH---------------Hh-----c-CCCEEEEEECC
Confidence            599999999997555421               00     1 45677899999